Query 006529
Match_columns 641
No_of_seqs 143 out of 656
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 00:36:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006529.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006529hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1278 Endosomal membrane pro 100.0 3E-208 5E-213 1646.7 58.0 626 2-641 2-628 (628)
2 KOG1277 Endosomal membrane pro 100.0 2E-164 5E-169 1278.1 44.1 553 34-641 29-593 (593)
3 PF02990 EMP70: Endomembrane p 100.0 7E-154 1E-158 1290.3 39.9 516 59-599 1-521 (521)
4 PF11368 DUF3169: Protein of u 84.7 9.5 0.00021 39.3 11.2 38 414-458 199-236 (248)
5 PF12670 DUF3792: Protein of u 78.4 6.5 0.00014 35.8 6.5 76 344-423 6-81 (116)
6 KOG2568 Predicted membrane pro 71.9 2.3 5E-05 48.1 2.1 146 336-528 265-418 (518)
7 PRK11339 abgT putative aminobe 63.5 21 0.00045 40.8 7.5 88 349-439 265-363 (508)
8 PF05297 Herpes_LMP1: Herpesvi 59.2 3.1 6.7E-05 43.4 0.0 57 374-430 101-159 (381)
9 PF07331 TctB: Tripartite tric 58.5 34 0.00074 31.6 6.9 24 403-427 109-132 (141)
10 PF06570 DUF1129: Protein of u 54.7 68 0.0015 32.1 8.8 46 356-404 90-135 (206)
11 PF13347 MFS_2: MFS/sugar tran 52.0 85 0.0018 34.4 9.9 82 320-407 208-291 (428)
12 PF03806 ABG_transport: AbgT p 51.9 1.3E+02 0.0028 34.5 11.1 90 376-469 294-401 (502)
13 PF06609 TRI12: Fungal trichot 49.6 2.4E+02 0.0051 33.2 13.2 62 347-417 143-204 (599)
14 PF08055 Trp_leader1: Tryptoph 44.8 9.8 0.00021 22.7 0.5 8 563-570 6-13 (18)
15 PF02990 EMP70: Endomembrane p 44.7 4.1E+02 0.0089 30.6 14.2 122 502-631 334-481 (521)
16 COG5393 Predicted membrane pro 43.6 31 0.00067 31.5 3.8 51 351-404 48-109 (131)
17 KOG0569 Permease of the major 38.6 88 0.0019 35.8 7.4 210 305-544 222-450 (485)
18 TIGR02973 nitrate_rd_NapE peri 38.1 26 0.00055 26.3 2.0 35 405-439 2-36 (42)
19 PF06570 DUF1129: Protein of u 37.2 57 0.0012 32.6 5.1 87 499-589 78-169 (206)
20 KOG1278 Endosomal membrane pro 36.9 6.4E+02 0.014 29.4 13.4 118 506-629 403-544 (628)
21 COG3112 Uncharacterized protei 34.8 28 0.00061 31.4 2.1 46 27-72 54-105 (121)
22 TIGR00881 2A0104 phosphoglycer 33.1 1.3E+02 0.0029 31.2 7.4 22 382-403 258-279 (379)
23 TIGR00893 2A0114 d-galactonate 32.1 1.7E+02 0.0036 30.4 7.9 24 384-407 259-282 (399)
24 TIGR00895 2A0115 benzoate tran 32.0 61 0.0013 34.1 4.6 25 381-405 290-314 (398)
25 PF12823 DUF3817: Domain of un 31.7 18 0.00039 31.7 0.4 26 492-517 62-87 (92)
26 PF06796 NapE: Periplasmic nit 31.4 31 0.00067 27.5 1.6 36 404-439 14-49 (56)
27 TIGR02972 TMAO_torE trimethyla 31.1 31 0.00068 26.5 1.5 36 404-439 6-41 (47)
28 COG2271 UhpC Sugar phosphate p 31.1 4.7E+02 0.01 29.6 11.2 68 388-470 304-372 (448)
29 TIGR00819 ydaH p-Aminobenzoyl- 28.9 2.2E+02 0.0048 32.8 8.5 51 348-399 266-328 (513)
30 TIGR00901 2A0125 AmpG-related 28.2 3.4E+02 0.0075 28.4 9.6 21 388-408 257-277 (356)
31 PLN00028 nitrate transmembrane 27.5 96 0.0021 34.8 5.4 33 372-404 288-320 (476)
32 COG2814 AraJ Arabinose efflux 27.0 5.2E+02 0.011 28.8 10.8 68 331-402 205-273 (394)
33 TIGR00894 2A0114euk Na(+)-depe 25.6 1.8E+02 0.0039 32.1 7.1 26 375-400 300-325 (465)
34 PRK12307 putative sialic acid 25.5 2.6E+02 0.0057 30.1 8.3 25 381-405 271-295 (426)
35 KOG2290 Rhomboid family protei 24.3 5.7E+02 0.012 29.0 10.2 67 348-414 517-602 (652)
36 COG4956 Integral membrane prot 22.9 1.5E+02 0.0033 31.8 5.3 90 378-474 45-134 (356)
37 PF09605 Trep_Strep: Hypotheti 22.8 2.7E+02 0.0059 27.4 6.9 22 451-472 157-178 (186)
38 PF05688 DUF824: Salmonella re 22.3 78 0.0017 24.3 2.3 29 38-66 8-36 (47)
39 PF14093 DUF4271: Domain of un 22.2 7.6E+02 0.017 24.3 11.2 16 385-400 89-104 (208)
40 COG1575 MenA 1,4-dihydroxy-2-n 22.2 3.6E+02 0.0078 28.9 8.0 121 286-409 44-177 (303)
41 PRK11273 glpT sn-glycerol-3-ph 22.1 1.2E+02 0.0025 33.7 4.7 21 383-403 296-316 (452)
42 PF12271 Chs3p: Chitin synthas 21.9 9.9E+02 0.022 25.5 14.3 121 349-470 118-246 (293)
43 COG2917 Intracellular septatio 21.8 2.6E+02 0.0057 27.5 6.3 101 356-461 54-167 (180)
No 1
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-208 Score=1646.67 Aligned_cols=626 Identities=66% Similarity=1.165 Sum_probs=587.4
Q ss_pred CCccccchHHHHHHHHHHHHHhhccceeecCCCCCCCCCCCCeEEEEEecccCCCCCcccccccCCCcCCCCcccccccc
Q 006529 2 KSRTRSTSATTAIVTFVVLLLIHGSHSFYLPGVAPQDFVKGDELYVKVNKLTSTKTQLPYSYYSIPYCRPKKIVDSAENL 81 (641)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~pg~~p~~Y~~gd~V~l~vNkl~s~~t~~~y~Yy~lpfC~p~~~~~~~~sl 81 (641)
..+.|+..+.. .+ +++.++.+.+++||+||++|.+|++||+|+++|||++|.++|+|||||++|||+|+++++++|||
T Consensus 2 ~~~~~~~~~~~-~~-ll~~~~~~~~~~FylpG~aPv~f~~gd~i~l~vnklts~~t~lpY~YY~~~Fc~p~~i~~~~EnL 79 (628)
T KOG1278|consen 2 LRPKRSSRTLL-AL-LLVSLLLSTSSAFYLPGVAPVNFCSGDPIELKVNKLTSSRTQLPYEYYSLPFCRPEKIKKQSENL 79 (628)
T ss_pred CcccchhhHHH-HH-HHHHHHHhcccceecCCcCCccCCCCCceEEEEEEeeccccccCcccccccccCccccCCcccch
Confidence 34445444333 22 22333334488999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCceeecCe-eEeccccccccceeeecCHHHHHHHHHHHHhcceEEEEEeceeeeeecccccCCCCeeeecCccc
Q 006529 82 GEVLRGDRIENSPY-FKMREPQMCNVICRLILDAKTAKAFKEKIDDEYRVNMILDNLPLVFPIRRLDQESPTVYQLGFHV 160 (641)
Q Consensus 82 GevL~Gdr~~~S~y-i~f~~~~~c~~lC~~~~t~~~~~~l~~~I~~~Y~~~~~iDnLPv~~~~~~~~~~~~~~y~~Gfpl 160 (641)
||+|+|||++|||| ++|++|++|+.+|+.++++++.+.++|+|+++|++||++||||++.+.... ++++++|++|||+
T Consensus 80 GeVl~GDRi~nSPy~~~m~e~~~C~~lC~~k~~~~~~~~l~~~I~~~Y~v~wivDnlPva~~~~~~-~~~~~~y~~Gfpl 158 (628)
T KOG1278|consen 80 GEVLRGDRIENSPYKFKMLENQPCETLCATKLDKEDAKLLKKLIREGYVVNWIVDNLPVATRYERS-DDGKVYYGTGFPL 158 (628)
T ss_pred hceeccCcccCCCceEecccCCcchhhhcccCCHHHHHHHHHHHhhccEeeeeecCCceeEEEeec-CCCceEeccCccc
Confidence 99999999999999 999999999999999999999999999999999999999999999876552 3478999999999
Q ss_pred cccccccCCCCCcEEEeeeEEEEEEEecCCCCCceEEEEEEEEeeeeeccccCCcccccccccCCCCCCccccCCCCccc
Q 006529 161 GLKGQYTGTKDEKYFIHNHLAFTVKYHRDIQTDYARIVGFEVKPFSVKHEYEGNWNEKTRLTTCDPHSKHTVVNSNTPQE 240 (641)
Q Consensus 161 G~~~~~~~~~~~~~yL~NH~~f~I~Y~~~~~~~~~rIVgf~v~P~Si~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~ 240 (641)
|+.+. ++.+++|++||++|+|+||+.+ .++||||||||+|+|++|++.+.+++. ...+|+.+.++..+++
T Consensus 159 G~~~~---~~~~~~y~~NHl~~~i~yH~~~-~~~~riVgfeV~P~Si~~~~~~~~~~~-~~~~c~~~~~~~~~~e----- 228 (628)
T KOG1278|consen 159 GFKGP---KDEDKYYLHNHLDFVIRYHRDD-NDKYRIVGFEVKPVSIKHEHEKGDSKN-SLPTCSIPEKPLELDE----- 228 (628)
T ss_pred eeccC---CCccceeEeeeEEEEEEEEecC-CCceEEEEEEEEeeeeecccCCCcccc-cCCcccCCCCccccCC-----
Confidence 99842 2556789999999999999987 566999999999999999876544333 5667877665544443
Q ss_pred cCCCcEEEEEEEEEEeecccccchhhhhhccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhhhh
Q 006529 241 VAENKEIIFTYDVEFQESDVKWASRWDAYLLMSDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDISKYNELETQEEA 320 (641)
Q Consensus 241 ~~~~~~i~fTYSV~w~~s~~~w~~Rwd~yl~~~~~~ihw~sIiNS~~ivl~L~~~v~~Il~r~l~~D~~~yn~~~~~~~~ 320 (641)
.+++++.|||||+|+|||++|++|||.||++++.|||||||+||++||+||+++|++|++||||||++|||++|.|||+
T Consensus 229 -~~~~~i~fTYsV~f~esdi~WasRWD~yL~m~~~qIhWfSIiNSlvIVlfLSgiv~mI~lRtl~rDiarYne~d~~~d~ 307 (628)
T KOG1278|consen 229 -GEETEIVFTYSVKFEESDIKWASRWDYYLHMEDVQIHWFSIINSLVIVLFLSGIVAMIMLRTLYRDIARYNELDLDDDA 307 (628)
T ss_pred -CCceEEEEEEEEEEEeccCcchhhHHHHhcCCCCceEEEehhhhHHHHHHHHHHHHHHHHHHHHHhHhhhccccchhhh
Confidence 2356799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCceEEeccccCCCCCccceeeeecchhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhhhhHHHHHHHH
Q 006529 321 QEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLY 400 (641)
Q Consensus 321 ~ee~GWKlvhgDVFR~P~~~~lls~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~g~~~Gy~S~r~y 400 (641)
|||+|||||||||||||+++|+||++||+|+|+++|+++++++|++|++||++||+++|+++++|+++|++|||+|+|+|
T Consensus 308 ~Ee~GWKLVhGDVFR~P~~~~lLsv~vGsGvQ~l~M~~vti~fA~lGflSPs~RGsLmT~~~~l~v~~G~~agY~s~rly 387 (628)
T KOG1278|consen 308 QEESGWKLVHGDVFRPPRNSMLLSVLVGSGVQLLGMILVTIFFACLGFLSPSSRGSLMTAMVLLFVFMGFVAGYVSARLY 387 (628)
T ss_pred hhhcceEEeecccccCCCCCeEEEEEeccChhhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHHHHHhhhhhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCccchhhhhhhccchhhHHHHHHHHHHHHHhhccCCCccChhHHHHHHHHHHHhhccchhhhhhhcccCCCCCCCc
Q 006529 401 KLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPV 480 (641)
Q Consensus 401 k~~~g~~W~~~~~lt~~l~P~~~~~i~~~lN~~~~~~~Ss~aipf~ti~~l~~lw~~vs~PL~~lG~~~g~k~~~~~~P~ 480 (641)
|+++|+.||+++++|++++||+++++++++|+++|+++||+|+||+|++++++||++||+||+++|+++|+|++++|+|+
T Consensus 388 k~~~g~~wk~~~~lta~l~PGivf~~~f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g~kk~~~e~Pv 467 (628)
T KOG1278|consen 388 KTFKGREWKRNAILTAFLFPGIVFAIFFVLNFFLWGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFGFKKPAIEHPV 467 (628)
T ss_pred hhhcCCcchhhHHhhhhhcchHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhhccCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCcccccchhhhcccccccchhhHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhHHhhhhhcccc
Q 006529 481 KTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFVILIVTCAEITIVLCYFQLC 560 (641)
Q Consensus 481 r~n~ipR~IP~q~~y~~~~~~~l~~G~lPF~~i~iEl~fi~~S~W~~~~yy~fgfL~~~~iilii~~a~vsI~~tY~~L~ 560 (641)
||||||||||+||||+++++++++||++|||+|||||+||++|+|.||+||+|||||++++||+++|||+||++||+|||
T Consensus 468 rTNqIpRqIP~q~~y~~~~~~ili~GilPFg~ifIELfFI~~SiW~~qfYY~FGFLFlvfiiLvvtcaeisIvl~Yf~LC 547 (628)
T KOG1278|consen 468 RTNQIPRQIPEQPWYLNPIPSILIAGILPFGAIFIELFFILSSIWLNQFYYMFGFLFLVFIILVVTCAEISIVLTYFQLC 547 (628)
T ss_pred ccCCCcccCCCCccccchhhHHHhhcccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeecccCchhHHHHHHHHhhheeeeeeccceeehhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccC
Q 006529 561 SEDYQWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKI 640 (641)
Q Consensus 561 ~Edy~WwWrSF~~~gs~~~y~flYsi~y~~~~~~~~g~~~~~~yf~ys~l~s~~~~l~~GtiGflas~~Fv~~IY~~iK~ 640 (641)
+||||||||||++||++|+|+|+||++|+++|++++|++++++|||||++++++++++||||||+||+|||||||+++|+
T Consensus 548 ~Edy~WwWRsF~~sG~~avY~fiYsi~Y~~~kL~i~g~~s~~LYfgYsli~~~~~~l~tGtIGF~a~~~Fv~kIYssvKi 627 (628)
T KOG1278|consen 548 AEDYNWWWRSFLTSGSSAVYVFIYSIFYFFTKLEISGFVSAVLYFGYSLIISLLFFLLTGTIGFLAAFWFVRKIYSSVKI 627 (628)
T ss_pred hcccceeeeeeeccCcchhhHHHHHHhhhheeeeecccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhheec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 006529 641 D 641 (641)
Q Consensus 641 D 641 (641)
|
T Consensus 628 D 628 (628)
T KOG1278|consen 628 D 628 (628)
T ss_pred C
Confidence 8
No 2
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-164 Score=1278.06 Aligned_cols=553 Identities=38% Similarity=0.794 Sum_probs=525.9
Q ss_pred CCCCCCCCCCeEEEEEecccCC-CCCcccccccCCCcC--CCCccccccccccccccCceeecCe-eEecccccccccee
Q 006529 34 VAPQDFVKGDELYVKVNKLTST-KTQLPYSYYSIPYCR--PKKIVDSAENLGEVLRGDRIENSPY-FKMREPQMCNVICR 109 (641)
Q Consensus 34 ~~p~~Y~~gd~V~l~vNkl~s~-~t~~~y~Yy~lpfC~--p~~~~~~~~slGevL~Gdr~~~S~y-i~f~~~~~c~~lC~ 109 (641)
...|.|++||+|++|+||++|. |+||+|.||+||||+ |+++++++|+|||+|.|||+..|+| ++|+.|++.+++|.
T Consensus 29 e~dh~Yk~~e~VvLw~NkVGPyhNpqETY~YfsLPfC~g~~~~i~hk~etLGEvL~G~eL~~s~y~ikF~~~v~~~v~C~ 108 (593)
T KOG1277|consen 29 ESDHRYKDGEEVVLWMNKVGPYHNPQETYRYFSLPFCSGSKESISHKHETLGEVLQGDELEFSGYEIKFRDNVEKEVYCE 108 (593)
T ss_pred ccccccccCCeeEEEEeccCCCCChhhhceeeccceecCCCcccchhhhhHHhhhCCceeeecceeeeecccCCceeeeh
Confidence 5679999999999999999998 889999999999999 4578899999999999999999999 99999999999999
Q ss_pred eecCHHHHHHHHHHHHhcceEEEEEeceeeeeecccccCCCCeeeecCccccccccccCCCCCcEEEeeeEEEEEEEecC
Q 006529 110 LILDAKTAKAFKEKIDDEYRVNMILDNLPLVFPIRRLDQESPTVYQLGFHVGLKGQYTGTKDEKYFIHNHLAFTVKYHRD 189 (641)
Q Consensus 110 ~~~t~~~~~~l~~~I~~~Y~~~~~iDnLPv~~~~~~~~~~~~~~y~~GfplG~~~~~~~~~~~~~yL~NH~~f~I~Y~~~ 189 (641)
+++++++++.++++|+|+|++||++||||+|..++++|++ ..++++++||+||.+|.|.||++
T Consensus 109 ~~L~~e~v~~f~~AI~~~Yyfqmy~DdlPIwGfvGe~d~~-----------------k~~~~~ky~L~thk~f~i~yn~d 171 (593)
T KOG1277|consen 109 KKLSEEKVKAFRYAIENDYYFQMYIDDLPIWGFVGEVDED-----------------KLDNEGKYYLYTHKKFEIGYNGD 171 (593)
T ss_pred hhcCHHHHHHHHHHHHhhheeeeeecCceeeeEeeeeccc-----------------cCCCCCceEEEEeeeEEEeecCc
Confidence 9999999999999999999999999999999999875322 12366789999999999999988
Q ss_pred CCCCceEEEEEEEEeeeeeccccCCcccccccccCCCCCCccccCCCCccccCCCcEEEEEEEEEEeecccccchhhhhh
Q 006529 190 IQTDYARIVGFEVKPFSVKHEYEGNWNEKTRLTTCDPHSKHTVVNSNTPQEVAENKEIIFTYDVEFQESDVKWASRWDAY 269 (641)
Q Consensus 190 ~~~~~~rIVgf~v~P~Si~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~i~fTYSV~w~~s~~~w~~Rwd~y 269 (641)
|||.++++.. . ..++.++..+++||||+|+|+++++++|.|+|
T Consensus 172 ------rii~vnlt~~----~---------------------------~v~L~~~~~~~~tYsV~W~~t~v~f~~rfdky 214 (593)
T KOG1277|consen 172 ------RIIDVNLTTH----G---------------------------LVDLRPDKKLTFTYSVKWKETEVEFEKRFDKY 214 (593)
T ss_pred ------eEEEEEeeec----c---------------------------cccCCCCCCCceEEEEEeeeccCcHHHHhHhh
Confidence 8999998751 1 12234466899999999999999999999999
Q ss_pred ccC--CCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhh-----hhhhhhhcCceEEeccccCCCCCccc
Q 006529 270 LLM--SDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDISKYNELET-----QEEAQEETGWKLVHGDVFRPPTNSDL 342 (641)
Q Consensus 270 l~~--~~~~ihw~sIiNS~~ivl~L~~~v~~Il~r~l~~D~~~yn~~~~-----~~~~~ee~GWKlvhgDVFR~P~~~~l 342 (641)
++. .+++||||||+||+++|+||+|+|++||+|+||||.+||+++|+ |+|+|||.|||+|||||||||+|+.|
T Consensus 215 ld~~ff~h~IHWfSIfNSfmmVifLvGlvamILMRtLrnDyarY~~dee~~d~~d~d~~~E~GWK~vHgDVFR~p~~~~L 294 (593)
T KOG1277|consen 215 LDPSFFPHRIHWFSIFNSFMMVIFLVGLVAMILMRTLRNDYARYAKDEEALDDMDRDDQEEYGWKQVHGDVFRFPSHPLL 294 (593)
T ss_pred cccccccceeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhccccccccccccceeeecccccCCCccHH
Confidence 974 47889999999999999999999999999999999999998754 34779999999999999999999999
Q ss_pred eeeeecchhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhhhccchhhH
Q 006529 343 LCVYVGTGVQFFGMMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGI 422 (641)
Q Consensus 343 ls~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~g~~~Gy~S~r~yk~~~g~~W~~~~~lt~~l~P~~ 422 (641)
||+++|+|.|++..+++++++|++|.+.+. ||+++|++|++|++++.++||+||.+|.+.||++|.|++++|+.++|++
T Consensus 295 fsa~lGsG~Qlf~l~~~ii~~Alvg~fy~~-rGal~saaI~vYAlTs~i~GY~~gs~Y~r~gG~~Wik~m~lta~Lfp~~ 373 (593)
T KOG1277|consen 295 FSAVLGSGAQLFTLVLIIIMLALVGVFYTE-RGALLSAAIVVYALTSPINGYVSGSFYARLGGRRWIKNMLLTASLFPVP 373 (593)
T ss_pred HHHHhccccchHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHhcccccccccceeeehhccHHHHHHHHHHhhhhhHH
Confidence 999999999999999999999999999987 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCccChhHHHHHHHHHHHhhccchhhhhhhcccC-CCCCCCcccCCCCCCCCCCCcccccchh
Q 006529 423 VSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKK-PAIEDPVKTNKIPRQIPEQAWYMNPIFS 501 (641)
Q Consensus 423 ~~~i~~~lN~~~~~~~Ss~aipf~ti~~l~~lw~~vs~PL~~lG~~~g~k~-~~~~~P~r~n~ipR~IP~q~~y~~~~~~ 501 (641)
+++.++++|+++|++++++|+||+|++.++++|++|..||+++|++.|.++ .+++.|||++++||+||++|||+++.+.
T Consensus 374 ~~~t~~~~N~vai~y~at~AlPfgt~v~v~~iw~fv~~PL~~~G~i~GkN~~~~~~~PCR~~~~pR~Ip~~kWy~~~~~~ 453 (593)
T KOG1277|consen 374 VFGTAFLLNTVAIAYGATAALPFGTIVVVLLIWLFVISPLTVLGGIAGKNRSGEFDAPCRTKAIPREIPPKKWYRSPLVI 453 (593)
T ss_pred HHHHHHHHHHHHHHhccccccCccchHHHHHHHHHHhchHHHcccccccccccCCCCCcccccCCCCCCCccccccchHH
Confidence 999999999999999999999999999999999999999999999999875 5789999999999999999999999999
Q ss_pred hhcccccccchhhHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhHHhhhhhccccCCCCceeeeeecccCchhHHH
Q 006529 502 ILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFVILIVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSALYL 581 (641)
Q Consensus 502 ~l~~G~lPF~~i~iEl~fi~~S~W~~~~yy~fgfL~~~~iilii~~a~vsI~~tY~~L~~Edy~WwWrSF~~~gs~~~y~ 581 (641)
+++||+|||++||||+||||+|+|.+++||+|||+++|++||+++++||||++|||||++||||||||||+++||+|+|+
T Consensus 454 ~~~gG~LPFgsIfIEmYfIFtSfW~ykiYyvYgfm~lVf~IL~iVtvcvTIv~TYFlLnaEDyrW~WtSfls~~ST~~yv 533 (593)
T KOG1277|consen 454 MLMGGFLPFGSIFIEMYFIFTSFWGYKIYYVYGFMFLVFVILLIVTVCVTIVLTYFLLNAEDYRWWWTSFLSAGSTALYV 533 (593)
T ss_pred HHhhccCccchhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccccceeeeeeeeccccceeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhheeeeeeccceeehhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccCC
Q 006529 582 FLYATFYFFTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 641 (641)
Q Consensus 582 flYsi~y~~~~~~~~g~~~~~~yf~ys~l~s~~~~l~~GtiGflas~~Fv~~IY~~iK~D 641 (641)
++||+|||++|++|.|+.|+.+|||||.++|.++|+|||||||.++..||||||+++|+|
T Consensus 534 y~Ys~yYy~~ktkMsG~fQTsfyFGYm~~f~~~lgim~Gtigy~gt~~FVR~IY~nvK~d 593 (593)
T KOG1277|consen 534 YLYSFYYYFFKTKMSGLFQTSFYFGYMAVFCYALGLMCGTIGYVGTLLFVRKIYRNVKID 593 (593)
T ss_pred hhhHHHHHhhhccccchhhhhhhhHHHHHHHHHHHHHHhhHhhhHHHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999999999999999999999999999998
No 3
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=6.9e-154 Score=1290.34 Aligned_cols=516 Identities=56% Similarity=1.097 Sum_probs=489.2
Q ss_pred cccccccCCCcCCCC-ccccccccccccccCceeecCe-eEeccccccccceeeecCHHHHHHHHHHHHhcceEEEEEec
Q 006529 59 LPYSYYSIPYCRPKK-IVDSAENLGEVLRGDRIENSPY-FKMREPQMCNVICRLILDAKTAKAFKEKIDDEYRVNMILDN 136 (641)
Q Consensus 59 ~~y~Yy~lpfC~p~~-~~~~~~slGevL~Gdr~~~S~y-i~f~~~~~c~~lC~~~~t~~~~~~l~~~I~~~Y~~~~~iDn 136 (641)
+|||||+||||+|++ .++++|||||+|+|||+++||| ++|++|++|+.+|+++++++|+++++++|+|+|++||++||
T Consensus 1 l~Y~Yy~lPfC~P~~~~~~~~~slGevL~Gdr~~~S~y~i~f~~~~~c~~lC~~~l~~~~~~~l~~~I~~~Y~~~~~vD~ 80 (521)
T PF02990_consen 1 LPYDYYDLPFCRPEEGIEHKSESLGEVLRGDRIQNSPYEIKFLQNVTCKVLCKKTLTKEDVKKLKEAIENNYRVEMYVDD 80 (521)
T ss_pred CCccccCCCCcCCCCccccccCCHHHHhccCceecCceEEEEecCcchhhccCccCCHHHHHHHHHHHHHhheeeEEecC
Confidence 599999999999996 8899999999999999999999 99999999999999999999999999999999999999999
Q ss_pred eeeeeecccccCCCCeeeecCccccccccccCCCCCcEEEeeeEEEEEEEecCCCCCceEEEEEEEEeeeeeccccCCcc
Q 006529 137 LPLVFPIRRLDQESPTVYQLGFHVGLKGQYTGTKDEKYFIHNHLAFTVKYHRDIQTDYARIVGFEVKPFSVKHEYEGNWN 216 (641)
Q Consensus 137 LPv~~~~~~~~~~~~~~y~~GfplG~~~~~~~~~~~~~yL~NH~~f~I~Y~~~~~~~~~rIVgf~v~P~Si~~~~~~~~~ 216 (641)
||++...++. ++.+..|..|+|+|.. +++++|||||++|+|+||+++ ++++|||||||+|+|++|.
T Consensus 81 LP~~~~~~~~-~~~~~~y~~G~~~g~~------~~~~~~l~NH~~f~I~Yn~~~-~~~~~IVgf~v~p~Si~~~------ 146 (521)
T PF02990_consen 81 LPIAGFIGSV-DGCDKGYPIGFPLGFK------DDNKYYLYNHLDFTIRYNQES-NGDYRIVGFEVTPRSIDHS------ 146 (521)
T ss_pred ceEEEEeccc-CCcceecCCCcccCcc------cCCcceeEeEEEEEEEEECCC-CCceEEEEEEEEeccccCc------
Confidence 9999998863 2235778889999887 678899999999999999886 6669999999999999886
Q ss_pred cccccccCCCC-CCccccCCCCccccCCCcEEEEEEEEEEeecccccchhhhhhcc-CCCCcchhhhHHHHHHHHHHHHH
Q 006529 217 EKTRLTTCDPH-SKHTVVNSNTPQEVAENKEIIFTYDVEFQESDVKWASRWDAYLL-MSDDQIHWFSIVNSLMIVLFLSG 294 (641)
Q Consensus 217 ~~~~~~~C~~~-~~~~~~~~~~~~~~~~~~~i~fTYSV~w~~s~~~w~~Rwd~yl~-~~~~~ihw~sIiNS~~ivl~L~~ 294 (641)
+|+.+ .++..+++ + ++..+|+|||||+|++++++|++|||+|++ ..++++||+||+||+++|+||++
T Consensus 147 ------~C~~~~~~~~~l~~-~----~~~~~i~fTYSV~w~~s~~~w~~Rwd~Yl~~~~~~~ihw~SiiNS~iivl~L~~ 215 (521)
T PF02990_consen 147 ------TCPGNESSPQELPE-D----KEADNITFTYSVKWEESDVPWASRWDKYLDSMFDSQIHWFSIINSFIIVLFLSG 215 (521)
T ss_pred ------cccccCCCCeeccC-C----CcccEEEEEEEEEEEecCCchhhccccccccccCCceEEEeHHHHHHHHHHHHH
Confidence 57654 23333332 1 112279999999999999999999999998 77899999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhcchhhhhhhhhhcCceEEeccccCCCCCccceeeeecchhHHHHHHHHHHHHHHhhccCCCCc
Q 006529 295 MVAMIMLRTLYRDISKYNELETQEEAQEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSNR 374 (641)
Q Consensus 295 ~v~~Il~r~l~~D~~~yn~~~~~~~~~ee~GWKlvhgDVFR~P~~~~lls~lvG~G~Qll~~~~~~l~~a~~g~lsp~~r 374 (641)
+|++|++|+||||++|||+++++||++||+|||+|||||||||+|+++||+++|+|+|+++|+++++++|++|+++|++|
T Consensus 216 ~v~~Il~R~l~~D~~~y~~~~~~~~~~ee~GWKlvhgDVFR~P~~~~lls~lvG~G~Qll~~~~~~~~~a~~g~~~~~~r 295 (521)
T PF02990_consen 216 LVAIILLRTLRRDISRYNDEDSEEDDQEESGWKLVHGDVFRPPKHPMLLSALVGTGIQLLFMALVTLFFAALGFLSPNNR 295 (521)
T ss_pred HHHHHHHHHhhcccccccccccccccccccchhhhhHHHhcCcCCchHHHhHhcchhhhhHHHHHHHHHHHhhhccccCc
Confidence 99999999999999999999887888999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhhhccchhhHHHHHHHHHHHHHhhccCCCccChhHHHHHHHH
Q 006529 375 GGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVL 454 (641)
Q Consensus 375 g~l~t~~i~ly~~~g~~~Gy~S~r~yk~~~g~~W~~~~~lt~~l~P~~~~~i~~~lN~~~~~~~Ss~aipf~ti~~l~~l 454 (641)
|+++|+++++|+++|++|||+|||+||+++|++||+++++|++++|++++++++++|+++|.++||+|+||+|++.++++
T Consensus 296 g~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~~~P~~~~~~~~~~n~i~~~~~ss~aipf~t~~~l~~l 375 (521)
T PF02990_consen 296 GSLLTAAIILYALTSFIAGYVSARLYKSFGGKKWKKNSILTSLLFPGILFSIFFILNFIAWSYGSSSAIPFGTILFLIAL 375 (521)
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCceeehhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchhhhhhhcccCCCC-CCCcccCCCCCCCCCCCcccccchhhhcccccccchhhHHHHHHHHhhhcchhHHHH
Q 006529 455 WFGISVPLVYVGSFVGFKKPAI-EDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQFYYIF 533 (641)
Q Consensus 455 w~~vs~PL~~lG~~~g~k~~~~-~~P~r~n~ipR~IP~q~~y~~~~~~~l~~G~lPF~~i~iEl~fi~~S~W~~~~yy~f 533 (641)
|++|++||+++|+++|+|+++. ++|||+|+||||||+||||+++++.++++|++||++|++||+||++|+|.+++||+|
T Consensus 376 w~~v~~PL~~lG~~~g~k~~~~~~~p~~~n~ipR~IP~~~~y~~~~~~~l~~G~lPF~~i~iEl~~i~~s~W~~~~y~~f 455 (521)
T PF02990_consen 376 WFFVSIPLTFLGGYFGFKNPPIDEFPCRTNQIPRQIPPQPWYLSPFFSILIGGILPFGAIFIELYFIFSSLWSNKFYYLF 455 (521)
T ss_pred HHHHhhhhhhcchhhhcCccccccCCcCCCCCCCcCCCCccccCCccceeecchHHHHHHHHHHHHHHHHhhcCcceEEe
Confidence 9999999999999999999888 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhccccCCCCceeeeeecccCchhHHHHHHHHhhheeeeeeccce
Q 006529 534 GFLFLVFVILIVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLV 599 (641)
Q Consensus 534 gfL~~~~iilii~~a~vsI~~tY~~L~~Edy~WwWrSF~~~gs~~~y~flYsi~y~~~~~~~~g~~ 599 (641)
|||+++++||+++|||+||++||+|||+||||||||||++|||+|+|+|+||+||+++|++|+||+
T Consensus 456 gfl~~~~~ll~i~~a~vsI~~tY~~L~~Edy~WwWrSF~~~~s~~~y~f~Ysi~y~~~~~~~~g~~ 521 (521)
T PF02990_consen 456 GFLLLVFILLIITCAEVSIILTYFQLCAEDYRWWWRSFLTGGSSGIYVFLYSIYYYFTKLSMSGFV 521 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeehhCcHHHHHHHHHHHHhhheeEEeeecC
Confidence 999999999999999999999999999999999999999999999999999999999999999974
No 4
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=84.68 E-value=9.5 Score=39.35 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=21.6
Q ss_pred hhccchhhHHHHHHHHHHHHHhhccCCCccChhHHHHHHHHHHHh
Q 006529 414 RTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGI 458 (641)
Q Consensus 414 lt~~l~P~~~~~i~~~lN~~~~~~~Ss~aipf~ti~~l~~lw~~v 458 (641)
++..++|+...++.++- . .++..+...++.+.++|+-+
T Consensus 199 ln~~ll~~~~~~l~i~s----~---~t~~~q~la~lvl~~I~iyi 236 (248)
T PF11368_consen 199 LNQYLLPILYILLFIYS----L---LTGENQLLAILVLIIIWIYI 236 (248)
T ss_pred HHHHHHHHHHHHHHHHH----H---HcCCccHHHHHHHHHHHHHH
Confidence 45566677655544332 1 23445566667777878754
No 5
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=78.36 E-value=6.5 Score=35.82 Aligned_cols=76 Identities=14% Similarity=0.299 Sum_probs=54.7
Q ss_pred eeeecchhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhhhccchhhHH
Q 006529 344 CVYVGTGVQFFGMMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIV 423 (641)
Q Consensus 344 s~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~g~~~Gy~S~r~yk~~~g~~W~~~~~lt~~l~P~~~ 423 (641)
+++-|.-.-+.++.+..++++.+=...+-+.+.+--...+.++++.+++|++++|.- +.|.|..- ..++.++=.++
T Consensus 6 ~vl~g~~~~~~~tl~~~l~~a~ll~~~~~~e~~~~~~~~~i~~ls~~~GG~~a~~~~---~~kG~l~G-~~~Gl~y~~il 81 (116)
T PF12670_consen 6 AVLKGLLVAYIITLILLLLLALLLYFTSLSESILPWLVVIIYILSVFIGGFYAGRKA---GSKGWLHG-LLVGLLYFLIL 81 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccchHHHH-HHHHHHHHHHH
Confidence 345566667777777778888765555666778888888999999999999999874 56778764 55554444433
No 6
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=71.91 E-value=2.3 Score=48.10 Aligned_cols=146 Identities=16% Similarity=0.289 Sum_probs=89.1
Q ss_pred CCCCccceeeeecchhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHH--HHHHHhhhhHHHHHHHHHhh--cCccchhh
Q 006529 336 PPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSNRGGLMTAMLL--LWVFMGLFAGYASARLYKLF--KGTEWKRI 411 (641)
Q Consensus 336 ~P~~~~lls~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~--ly~~~g~~~Gy~S~r~yk~~--~g~~W~~~ 411 (641)
.|.-.+.++++++++=+-+.-+++.++.--.|+.+|.-+|.++..+.+ +|.+.+.+.|-+ |.+..- ...+|+..
T Consensus 265 ~~~~~~~~a~i~sa~K~Tlsr~LlLIVSlGYGIVkP~Lg~~l~rv~~ig~~~~i~s~i~~l~--~~~g~~se~~~~~~lf 342 (518)
T KOG2568|consen 265 SPKVYTVFASILSAIKKTLSRLLLLIVSLGYGIVKPTLGGTLLRVCQIGVIYFIASEILGLA--RVIGNISELSSLLILF 342 (518)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhcCcceEecCcchHHHHHHHHhHHHHHHHHHHHHH--HHhcCcccccchhhHH
Confidence 677889999999999998888877777778899999888877764432 333334444422 112110 01111111
Q ss_pred hhhhccchhhHHHHHHHHHHHHHhhccCCCccChhHHHHHHHHHHHhhccchhhhhhhcccCCCCCCCcccCCCCCCCCC
Q 006529 412 AFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPE 491 (641)
Q Consensus 412 ~~lt~~l~P~~~~~i~~~lN~~~~~~~Ss~aipf~ti~~l~~lw~~vs~PL~~lG~~~g~k~~~~~~P~r~n~ipR~IP~ 491 (641)
.++|+--....+..|+++|++=|+ |.=++.|++-+
T Consensus 343 -----------------------------~~ip~ai~d~~f~~wIF~SL~~Tl----------------k~Lr~rRn~vK 377 (518)
T KOG2568|consen 343 -----------------------------AALPLAILDAAFIYWIFISLAKTL----------------KKLRLRRNIVK 377 (518)
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHH
Confidence 034444555666778888877654 22344566665
Q ss_pred CCcccccchhhhcccccccchhhHHHHHHH----Hhhhcch
Q 006529 492 QAWYMNPIFSILIGGILPFGAVFIELFFIL----TSIWLNQ 528 (641)
Q Consensus 492 q~~y~~~~~~~l~~G~lPF~~i~iEl~fi~----~S~W~~~ 528 (641)
-.-|++-.-.+.++=+.-|+-|.+|.++.- +..|+..
T Consensus 378 l~lYr~F~n~l~~~Vvas~~~i~~~~~~~~~~~~~~~Wk~~ 418 (518)
T KOG2568|consen 378 LSLYRKFTNTLAFSVVASFAFILVETIFYSIMSCNKDWKER 418 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 566766444444444556666778887755 6667765
No 7
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=63.52 E-value=21 Score=40.82 Aligned_cols=88 Identities=13% Similarity=0.232 Sum_probs=43.2
Q ss_pred chhHHHHHHHHHHHHHH--hhccCCCCcc-----hHHH----HHHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhhhcc
Q 006529 349 TGVQFFGMMLVTMIFAL--LGFLSPSNRG-----GLMT----AMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAI 417 (641)
Q Consensus 349 ~G~Qll~~~~~~l~~a~--~g~lsp~~rg-----~l~t----~~i~ly~~~g~~~Gy~S~r~yk~~~g~~W~~~~~lt~~ 417 (641)
.|+-++..+.+.+++.+ -|.+...+.| -+++ ...++|.+.|.+-|++++++.+ .++..+.+.-..-
T Consensus 265 Ag~~~l~~~~~i~~l~lP~~g~Lr~~~tG~l~~Sp~~~siv~~i~~~Fli~GivyG~~~g~iks---~~Dv~~~m~~g~~ 341 (508)
T PRK11339 265 AGVVSLLFIAAIALMVIPENGILRDPINHTVMPSPFIKGIVPLIILFFFVVSLAYGIATRTIRR---QADLPHLMIEPMK 341 (508)
T ss_pred HHHHHHHHHHHHHHHHccCCcccccCCCCCccCChHHHhHHHHHHHHHHHHHHHHhhhcccccC---HHHHHHHHHHHHH
Confidence 56656555444444321 4555432224 5677 5666677777777777775432 2333222222222
Q ss_pred chhhHHHHHHHHHHHHHhhccC
Q 006529 418 TFPGIVSAIFFVLNALIWGQKS 439 (641)
Q Consensus 418 l~P~~~~~i~~~lN~~~~~~~S 439 (641)
-.-+.++.+++...++.+.+.|
T Consensus 342 ~m~~~ivl~F~~Aqfia~F~~s 363 (508)
T PRK11339 342 EMAGFIVMVFPLAQFVAMFNWS 363 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 2223344444555566654333
No 8
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=59.23 E-value=3.1 Score=43.43 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHh--hhhHHHHHHHHHhhcCccchhhhhhhccchhhHHHHHHHHH
Q 006529 374 RGGLMTAMLLLWVFMG--LFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVL 430 (641)
Q Consensus 374 rg~l~t~~i~ly~~~g--~~~Gy~S~r~yk~~~g~~W~~~~~lt~~l~P~~~~~i~~~l 430 (641)
.|..+-..+++++++- ..+=++=..+.+..+..-|...+++-++++-.++++|...+
T Consensus 101 tGQ~LF~Gi~~l~l~~lLaL~vW~Ym~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L 159 (381)
T PF05297_consen 101 TGQTLFVGIVILFLCCLLALGVWFYMWLLRELGASFWTILAFCLAFLLAIVLLIIAVLL 159 (381)
T ss_dssp -----------------------------------------------------------
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3433334444444332 22333224566778889998877777766655555554444
No 9
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=58.48 E-value=34 Score=31.56 Aligned_cols=24 Identities=17% Similarity=0.600 Sum_probs=15.1
Q ss_pred hcCccchhhhhhhccchhhHHHHHH
Q 006529 403 FKGTEWKRIAFRTAITFPGIVSAIF 427 (641)
Q Consensus 403 ~~g~~W~~~~~lt~~l~P~~~~~i~ 427 (641)
+|.++|++. +..+..+|..+..++
T Consensus 109 ~g~r~~~~~-~~~s~~~~~~i~~~F 132 (141)
T PF07331_consen 109 LGERRWLRL-LLISVVFAAVIYFVF 132 (141)
T ss_pred hCCCcHHHH-HHHHHHHHHHHHHHH
Confidence 347889886 555556666655544
No 10
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=54.66 E-value=68 Score=32.08 Aligned_cols=46 Identities=17% Similarity=0.499 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhhhhHHHHHHHHHhhc
Q 006529 356 MMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFK 404 (641)
Q Consensus 356 ~~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~g~~~Gy~S~r~yk~~~ 404 (641)
..+.+++.+.++++++.++... .+..-++.++++|.+-..+++.+.
T Consensus 90 ~~if~~~~gi~~~f~~~~~~~~---gi~tli~~~i~~G~~~~~~~~~i~ 135 (206)
T PF06570_consen 90 FGIFSLLFGIMGFFSPKNSNQY---GIITLILVSIVGGLVFYFIFKYIY 135 (206)
T ss_pred HHHHHHHHHHHHHHhhcccccc---cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3355677778888877432221 233334456667766666666544
No 11
>PF13347 MFS_2: MFS/sugar transport protein
Probab=52.03 E-value=85 Score=34.38 Aligned_cols=82 Identities=16% Similarity=0.240 Sum_probs=45.0
Q ss_pred hhhhcCceEEeccccCCCCCccceeeeec--chhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhhhhHHHHH
Q 006529 320 AQEETGWKLVHGDVFRPPTNSDLLCVYVG--TGVQFFGMMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASA 397 (641)
Q Consensus 320 ~~ee~GWKlvhgDVFR~P~~~~lls~lvG--~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~g~~~Gy~S~ 397 (641)
.++..++|..-..+||-|+...++.+..- .|..+..... .+.+-..+. .+...+.....+.+.++++....+
T Consensus 208 ~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~---~y~~~~vl~---~~~~~~~~~~~~~~~~~v~~~~~~ 281 (428)
T PF13347_consen 208 QEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFL---PYYFTYVLG---NEGLISIFMLIFFVASIVGSPLWG 281 (428)
T ss_pred cccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHH---HHHHHHHhc---CchhhHHHHHHHHHHHHHHHHHHH
Confidence 34556666666778888776555433222 2222222211 111212221 224455555667778888888889
Q ss_pred HHHHhhcCcc
Q 006529 398 RLYKLFKGTE 407 (641)
Q Consensus 398 r~yk~~~g~~ 407 (641)
++-|.+|.++
T Consensus 282 ~l~~r~gk~~ 291 (428)
T PF13347_consen 282 RLSKRFGKKK 291 (428)
T ss_pred HHHHHcccee
Confidence 9999886554
No 12
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=51.92 E-value=1.3e+02 Score=34.55 Aligned_cols=90 Identities=13% Similarity=0.225 Sum_probs=42.4
Q ss_pred hHHHHHHH----HHHHHhhhhHHHHHHHHHhhcC-ccchhhhhhhccchhhHHHHHHHHHHHHHhhccCC----------
Q 006529 376 GLMTAMLL----LWVFMGLFAGYASARLYKLFKG-TEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSS---------- 440 (641)
Q Consensus 376 ~l~t~~i~----ly~~~g~~~Gy~S~r~yk~~~g-~~W~~~~~lt~~l~P~~~~~i~~~lN~~~~~~~Ss---------- 440 (641)
.++...+. .|.+.|.+=|+.||++ ++ ++..+.+--..--....+...++...++.+.+.|.
T Consensus 294 Pf~~gIIpiI~l~F~i~GivYG~~sG~i----ks~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA 369 (502)
T PF03806_consen 294 PFMKGIIPIIFLFFLIPGIVYGIASGTI----KSDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGA 369 (502)
T ss_pred hHHHhHHHHHHHHHHHHHHHHhhhhcee----cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 45554444 4445555555555543 22 33333322222333445555666666666665554
Q ss_pred ---CccChhHHHHHHHHHHHhhccchhhhhhh
Q 006529 441 ---GAVPFGTMFALIVLWFGISVPLVYVGSFV 469 (641)
Q Consensus 441 ---~aipf~ti~~l~~lw~~vs~PL~~lG~~~ 469 (641)
.+..+..+..++.+-++.++=--++||--
T Consensus 370 ~~L~~~~~~~~~l~i~fill~a~iNLfi~S~S 401 (502)
T PF03806_consen 370 EFLKSLGLPGIPLIIGFILLTAFINLFIGSAS 401 (502)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHhhhcch
Confidence 12333444444444444444444555543
No 13
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=49.60 E-value=2.4e+02 Score=33.23 Aligned_cols=62 Identities=16% Similarity=0.272 Sum_probs=36.3
Q ss_pred ecchhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhhhcc
Q 006529 347 VGTGVQFFGMMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAI 417 (641)
Q Consensus 347 vG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~g~~~Gy~S~r~yk~~~g~~W~~~~~lt~~ 417 (641)
+|.|.|.+..+ +.+ -..+...|+.-....-+.++....++|.++.++.. ..+||++..+...
T Consensus 143 vgaG~~~~~~~----~is--El~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~---~~~WRw~~~~~~i 204 (599)
T PF06609_consen 143 VGAGVQELAAL----AIS--ELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA---HSGWRWIFYIFII 204 (599)
T ss_pred HhhHHHHHHHH----HHH--HhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc---CCCcchHHHHHHH
Confidence 36777775432 122 23344557654444445556666678888777643 4689997665544
No 14
>PF08055 Trp_leader1: Tryptophan leader peptide; InterPro: IPR012638 This family consists of the tryptophan (trp) leader peptides. Tryptophan accumulation is the principal event resulting in down regulation of transcription of the structural genes of the trp operon. The leader peptide of the trp operon forms mutually exclusive secondary structures that would either result in the termination of transcription of the trp operon when tryptophan is in plentiful supply or vice versa [].
Probab=44.79 E-value=9.8 Score=22.68 Aligned_cols=8 Identities=38% Similarity=1.610 Sum_probs=6.0
Q ss_pred CCceeeee
Q 006529 563 DYQWWWRS 570 (641)
Q Consensus 563 dy~WwWrS 570 (641)
--+|||.+
T Consensus 6 ~~nwwwta 13 (18)
T PF08055_consen 6 IQNWWWTA 13 (18)
T ss_pred ccceeeec
Confidence 35899975
No 15
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=44.66 E-value=4.1e+02 Score=30.58 Aligned_cols=122 Identities=20% Similarity=0.401 Sum_probs=74.7
Q ss_pred hhcccccccchhhHHHHHHHHhh-hcch--hHHHHHHHHHHHHHHHHHHHhHHhhhhhccccCCC---------------
Q 006529 502 ILIGGILPFGAVFIELFFILTSI-WLNQ--FYYIFGFLFLVFVILIVTCAEITIVLCYFQLCSED--------------- 563 (641)
Q Consensus 502 ~l~~G~lPF~~i~iEl~fi~~S~-W~~~--~yy~fgfL~~~~iilii~~a~vsI~~tY~~L~~Ed--------------- 563 (641)
++-+.++|.... =.+++++.+ |.++ --..|+-++.++.++++++.-.+++..|+-...+.
T Consensus 334 ~lt~~~~P~~~~--~~~~~~n~i~~~~~ss~aipf~t~~~l~~lw~~v~~PL~~lG~~~g~k~~~~~~~p~~~n~ipR~I 411 (521)
T PF02990_consen 334 ILTSLLFPGILF--SIFFILNFIAWSYGSSSAIPFGTILFLIALWFFVSIPLTFLGGYFGFKNPPIDEFPCRTNQIPRQI 411 (521)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhhccccccchHHHHHHHHHHHHHhhhhhhcchhhhcCccccccCCcCCCCCCCcC
Confidence 344567777443 334455554 6554 23568888888888999999999999888743321
Q ss_pred --Cceeeeee---cccC---chhHHHHHHHHhhheeeeeeccceeehhHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 006529 564 --YQWWWRSY---LTSG---SSALYLFLYATFYFFTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFT 631 (641)
Q Consensus 564 --y~WwWrSF---~~~g---s~~~y~flYsi~y~~~~~~~~g~~~~~~yf~ys~l~s~~~~l~~GtiGflas~~Fv 631 (641)
-.|.=+.+ +.+| ..++|+.+|.++--+-.-+ ....||+.++..+++.+.|+.|+-+.++.-.
T Consensus 412 P~~~~y~~~~~~~l~~G~lPF~~i~iEl~~i~~s~W~~~------~y~~fgfl~~~~~ll~i~~a~vsI~~tY~~L 481 (521)
T PF02990_consen 412 PPQPWYLSPFFSILIGGILPFGAIFIELYFIFSSLWSNK------FYYLFGFLLLVFILLIITCAEVSIILTYFQL 481 (521)
T ss_pred CCCccccCCccceeecchHHHHHHHHHHHHHHHHhhcCc------ceEEehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24543333 4445 3455777665543322111 2334677777777778888888888777544
No 16
>COG5393 Predicted membrane protein [Function unknown]
Probab=43.57 E-value=31 Score=31.55 Aligned_cols=51 Identities=25% Similarity=0.359 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHhhcc----------CCCCcc-hHHHHHHHHHHHHhhhhHHHHHHHHHhhc
Q 006529 351 VQFFGMMLVTMIFALLGFL----------SPSNRG-GLMTAMLLLWVFMGLFAGYASARLYKLFK 404 (641)
Q Consensus 351 ~Qll~~~~~~l~~a~~g~l----------sp~~rg-~l~t~~i~ly~~~g~~~Gy~S~r~yk~~~ 404 (641)
.|+++|...+++|+.+|.. -|.+|= +......++|++..+.+++ +++|+.+
T Consensus 48 l~lllm~gLtl~fa~~~lmsL~vLvi~~f~~tyRl~a~~a~~~vl~vl~~i~ciW---~lrks~~ 109 (131)
T COG5393 48 LQLLLMAGLTLLFAAFGLMSLMVLVIWAFDPTYRLNAMIATTAVLLVLALIGCIW---TLRKSRK 109 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh
Confidence 4666666666666665544 366665 7777788889988888877 4555443
No 17
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=38.57 E-value=88 Score=35.76 Aligned_cols=210 Identities=16% Similarity=0.185 Sum_probs=0.0
Q ss_pred hhhhhhhcchhhhhhhhhhcCceEEec-----------cccCCC--CCccceeeeecchhHHHH----HHHHHHHHHHhh
Q 006529 305 YRDISKYNELETQEEAQEETGWKLVHG-----------DVFRPP--TNSDLLCVYVGTGVQFFG----MMLVTMIFALLG 367 (641)
Q Consensus 305 ~~D~~~yn~~~~~~~~~ee~GWKlvhg-----------DVFR~P--~~~~lls~lvG~G~Qll~----~~~~~l~~a~~g 367 (641)
+|.+++|-..++++++.||.=+..=.. |++|-| +.+++....+..+.|+-. ..-.+-++--.|
T Consensus 222 ~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG 301 (485)
T KOG0569|consen 222 RKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAG 301 (485)
T ss_pred HHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcC
Q ss_pred ccCCCCcchHHHHHHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhhhccchhhHHHHHHHHHHHHHhhccCCCccChhH
Q 006529 368 FLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGT 447 (641)
Q Consensus 368 ~lsp~~rg~l~t~~i~ly~~~g~~~Gy~S~r~yk~~~g~~W~~~~~lt~~l~P~~~~~i~~~lN~~~~~~~Ss~aipf~t 447 (641)
+++..--..-.+.-++..++.++|.+.-=|. |+|+....-+....+-.+++.+...++-... +...
T Consensus 302 -~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-----gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~ 367 (485)
T KOG0569|consen 302 -FTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-----GRRPLLLISLSLMAVALLLMSIALFLSNSFG--------SWLS 367 (485)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hHHH
Q ss_pred HHHHHHHHHHhhccchhhhhhhcccCCCCCCCcccCCCCCCCCCCCcccccchhhhcccccccchhh--HHHHHHHHhhh
Q 006529 448 MFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVF--IELFFILTSIW 525 (641)
Q Consensus 448 i~~l~~lw~~vs~PL~~lG~~~g~k~~~~~~P~r~n~ipR~IP~q~~y~~~~~~~l~~G~lPF~~i~--iEl~fi~~S~W 525 (641)
...+.++..++...-.=.|.+--+ |+.|.=+|. .+.-..-+++.....+-+ .-.+..+++.|
T Consensus 368 y~~i~~~~~~~~~f~~G~gpi~~f-------------i~aELf~~~---~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~ 431 (485)
T KOG0569|consen 368 YLCIAAIFLFIISFAIGPGPIPWF-------------IGAELFPQS---ARSAAQSVATAVNWLSNFIVGFAFPPLQNVI 431 (485)
T ss_pred HHHHHHHHHHHHhhhcCCCchhHH-------------HHHHhCCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 006529 526 LNQFYYIFGFLFLVFVILI 544 (641)
Q Consensus 526 ~~~~yy~fgfL~~~~iili 544 (641)
+...|-+|..-.+.+.+.+
T Consensus 432 g~~~filF~i~~~~~~i~~ 450 (485)
T KOG0569|consen 432 GPYVFILFVIPLAIFLIYL 450 (485)
T ss_pred cchhhHHHHHHHHHHHHHH
No 18
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=38.13 E-value=26 Score=26.28 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=30.0
Q ss_pred CccchhhhhhhccchhhHHHHHHHHHHHHHhhccC
Q 006529 405 GTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKS 439 (641)
Q Consensus 405 g~~W~~~~~lt~~l~P~~~~~i~~~lN~~~~~~~S 439 (641)
.+.||...+++..++|.+..+....--++.|..+-
T Consensus 2 ~~El~~flfl~~~l~PiLsV~~V~~YGF~vWm~Q~ 36 (42)
T TIGR02973 2 RMELNTFLFLAAVIWPVLSVITVGGYGFAVWMYQI 36 (42)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999988888888887653
No 19
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=37.22 E-value=57 Score=32.64 Aligned_cols=87 Identities=18% Similarity=0.349 Sum_probs=39.7
Q ss_pred chhhhcccccccchhhHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhHHhhhh--hccc--cCCCCceeeeeeccc
Q 006529 499 IFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFVILIVTCAEITIVLC--YFQL--CSEDYQWWWRSYLTS 574 (641)
Q Consensus 499 ~~~~l~~G~lPF~~i~iEl~fi~~S~W~~~~yy~fgfL~~~~iilii~~a~vsI~~t--Y~~L--~~Edy~WwWrSF~~~ 574 (641)
+..+.+-+.+=|.+++.=++-++. .+..+---.+|++.+..+- ..+-+.+... |++- +.+..++||+.+..+
T Consensus 78 ~~~~~ld~~L~~~~if~~~~gi~~-~f~~~~~~~~gi~tli~~~---i~~G~~~~~~~~~i~~~~~~~~r~~~~k~~~~~ 153 (206)
T PF06570_consen 78 PWLMALDNSLLFFGIFSLLFGIMG-FFSPKNSNQYGIITLILVS---IVGGLVFYFIFKYIYPYKKKKKRPSWWKYILIS 153 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccccccHHHHHHHH---HHHHHHHHHHHHHHhcccccccccHHHHHHHHH
Confidence 334445555556666554444443 2322110111665432221 2222233333 3333 346667899998754
Q ss_pred Cc-hhHHHHHHHHhhh
Q 006529 575 GS-SALYLFLYATFYF 589 (641)
Q Consensus 575 gs-~~~y~flYsi~y~ 589 (641)
.. ..+++.++.+..+
T Consensus 154 ~~~~~~w~~~~~~~~~ 169 (206)
T PF06570_consen 154 VLAMVLWIVIFVLTSF 169 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 43 4445555544443
No 20
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.87 E-value=6.4e+02 Score=29.45 Aligned_cols=118 Identities=17% Similarity=0.354 Sum_probs=74.1
Q ss_pred cccccchhhHHHHHHHHhhhcch--hHHHHHHHHHHHHHHHHHHHhHHhhhhhccccCC----------------CCcee
Q 006529 506 GILPFGAVFIELFFILTSIWLNQ--FYYIFGFLFLVFVILIVTCAEITIVLCYFQLCSE----------------DYQWW 567 (641)
Q Consensus 506 G~lPF~~i~iEl~fi~~S~W~~~--~yy~fgfL~~~~iilii~~a~vsI~~tY~~L~~E----------------dy~Ww 567 (641)
+++-=|+++.-.+....=+|.++ -=--|+-++....+...++.-.|-+.-|+--+.. ..+|+
T Consensus 403 a~l~PGivf~~~f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g~kk~~~e~PvrTNqIpRqIP~q~~y 482 (628)
T KOG1278|consen 403 AFLFPGIVFAIFFVLNFFLWGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFGFKKPAIEHPVRTNQIPRQIPEQPWY 482 (628)
T ss_pred hhhcchHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhhccCCCCCCCcccCCCcccCCCCccc
Confidence 33333445544444444469875 2245677777777788888888888888766543 33787
Q ss_pred ee---eecccCc---hhHHHHHHHHhhheeeeeeccceeehhHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 006529 568 WR---SYLTSGS---SALYLFLYATFYFFTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFW 629 (641)
Q Consensus 568 Wr---SF~~~gs---~~~y~flYsi~y~~~~~~~~g~~~~~~yf~ys~l~s~~~~l~~GtiGflas~~ 629 (641)
=+ +-+.+|. -++|+.++.|+ +.+=++ |.-+.||+.++.-+++-+.|.-|+-+.++.
T Consensus 483 ~~~~~~ili~GilPFg~ifIELfFI~---~SiW~~---qfYY~FGFLFlvfiiLvvtcaeisIvl~Yf 544 (628)
T KOG1278|consen 483 LNPIPSILIAGILPFGAIFIELFFIL---SSIWLN---QFYYMFGFLFLVFIILVVTCAEISIVLTYF 544 (628)
T ss_pred cchhhHHHhhcccchHHHHHHHHHHH---HHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 4455554 34566655333 333222 666778998888888888888888877764
No 21
>COG3112 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.81 E-value=28 Score=31.39 Aligned_cols=46 Identities=22% Similarity=0.538 Sum_probs=36.8
Q ss_pred ceeecCCCCCCCCCCCCeEEEEEecccCC--CC-Cccccccc---CCCcCCC
Q 006529 27 HSFYLPGVAPQDFVKGDELYVKVNKLTST--KT-QLPYSYYS---IPYCRPK 72 (641)
Q Consensus 27 ~~f~~pg~~p~~Y~~gd~V~l~vNkl~s~--~t-~~~y~Yy~---lpfC~p~ 72 (641)
+.+.++|..-.-+-+||+|.|..|.|.=. .. ..-+.||| |-+|-.+
T Consensus 54 ~~~~~~G~Eytl~~~geEVmVraN~L~~e~de~lE~df~yYDeESla~CG~e 105 (121)
T COG3112 54 REWQLAGHEYTLWMDGEEVMVRANQLAFEGDEELEEDFNYYDEESLALCGTE 105 (121)
T ss_pred hhheecCcEEEEEEcCceeeeecchhccccchhhhcccccccHHHHHhhchH
Confidence 36899999988889999999999999744 32 36688996 8899653
No 22
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=33.08 E-value=1.3e+02 Score=31.17 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=13.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHhh
Q 006529 382 LLLWVFMGLFAGYASARLYKLF 403 (641)
Q Consensus 382 i~ly~~~g~~~Gy~S~r~yk~~ 403 (641)
...+.+.+.++...++++-+..
T Consensus 258 ~~~~~~~~~~~~~~~g~l~~r~ 279 (379)
T TIGR00881 258 FTLYELGGLVGTLLAGWLSDKL 279 (379)
T ss_pred HHHHHHHcchhHHHHHHHHHHH
Confidence 3445566667777777776644
No 23
>TIGR00893 2A0114 d-galactonate transporter.
Probab=32.05 E-value=1.7e+02 Score=30.41 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=14.0
Q ss_pred HHHHHhhhhHHHHHHHHHhhcCcc
Q 006529 384 LWVFMGLFAGYASARLYKLFKGTE 407 (641)
Q Consensus 384 ly~~~g~~~Gy~S~r~yk~~~g~~ 407 (641)
.+.+.+.++....+++.+.++.++
T Consensus 259 ~~~~~~~~~~~~~g~~~~~~~~~~ 282 (399)
T TIGR00893 259 LPGIVGFIGMILGGRLSDLLLRRG 282 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344555666666666666666554
No 24
>TIGR00895 2A0115 benzoate transport.
Probab=31.98 E-value=61 Score=34.08 Aligned_cols=25 Identities=16% Similarity=0.057 Sum_probs=16.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhhcC
Q 006529 381 MLLLWVFMGLFAGYASARLYKLFKG 405 (641)
Q Consensus 381 ~i~ly~~~g~~~Gy~S~r~yk~~~g 405 (641)
....+.+.+.++..+++++-+.++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (398)
T TIGR00895 290 GGALFNFGGVIGSIIFGWLADRLGP 314 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcch
Confidence 3444556677777777777766653
No 25
>PF12823 DUF3817: Domain of unknown function (DUF3817); InterPro: IPR023845 This domain is associated with, strictly bacterial integral membrane proteins. It occurs in proteins that on rare occasions are fused to transporter domains such as the major facilitator superfamily domain. Of three invariant residues, two occur as a His-Gly dipeptide in the middle of three predicted transmembrane helices.
Probab=31.74 E-value=18 Score=31.67 Aligned_cols=26 Identities=23% Similarity=0.676 Sum_probs=22.0
Q ss_pred CCcccccchhhhcccccccchhhHHH
Q 006529 492 QAWYMNPIFSILIGGILPFGAVFIEL 517 (641)
Q Consensus 492 q~~y~~~~~~~l~~G~lPF~~i~iEl 517 (641)
+.|=.+.....+++|++||++...|-
T Consensus 62 ~rW~~~~~~~~llas~iPfg~f~~er 87 (92)
T PF12823_consen 62 YRWSLKRTLLALLASVIPFGTFWFER 87 (92)
T ss_pred cCCChHHHHHHHHHHcccccHHHHHH
Confidence 35667778889999999999998885
No 26
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=31.38 E-value=31 Score=27.49 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=30.4
Q ss_pred cCccchhhhhhhccchhhHHHHHHHHHHHHHhhccC
Q 006529 404 KGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKS 439 (641)
Q Consensus 404 ~g~~W~~~~~lt~~l~P~~~~~i~~~lN~~~~~~~S 439 (641)
+++.||...+++..++|.+..++...--++.|..+-
T Consensus 14 k~~E~~~flfl~~~l~PiL~v~~Vg~YGF~VWm~Q~ 49 (56)
T PF06796_consen 14 KRSELKAFLFLAVVLFPILAVAFVGGYGFIVWMYQI 49 (56)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999988888888887553
No 27
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=31.14 E-value=31 Score=26.46 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=30.2
Q ss_pred cCccchhhhhhhccchhhHHHHHHHHHHHHHhhccC
Q 006529 404 KGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKS 439 (641)
Q Consensus 404 ~g~~W~~~~~lt~~l~P~~~~~i~~~lN~~~~~~~S 439 (641)
+.+.||...+++..++|.+..+....--++.|..+-
T Consensus 6 k~~El~~flfl~v~l~PiLsV~~Vg~YGF~vWm~Q~ 41 (47)
T TIGR02972 6 RSNELKALGFIIVVLFPILSVAGIGGYGFIIWMIQA 41 (47)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999888888888887653
No 28
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=31.12 E-value=4.7e+02 Score=29.58 Aligned_cols=68 Identities=21% Similarity=0.295 Sum_probs=38.8
Q ss_pred HhhhhHHHHHHHHHhhcCccchhhhhhhccchhhHHHHHHHHHHHH-HhhccCCCccChhHHHHHHHHHHHhhccchhhh
Q 006529 388 MGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNAL-IWGQKSSGAVPFGTMFALIVLWFGISVPLVYVG 466 (641)
Q Consensus 388 ~g~~~Gy~S~r~yk~~~g~~W~~~~~lt~~l~P~~~~~i~~~lN~~-~~~~~Ss~aipf~ti~~l~~lw~~vs~PL~~lG 466 (641)
+++++||.|=++ |+|+|+..+.+.. +...+-++ .|. +.+.-+.-....++.+=++|.-|=.++|
T Consensus 304 G~Ll~GwlSDkl---fkgrR~p~~~i~~----------~~i~~~~~~~w~--~~~~~~~l~~~~l~~iGf~IyGPqmLiG 368 (448)
T COG2271 304 GTLLAGWLSDKL---FKGRRGPMALIFM----------LLITASLVLYWL--APNGSYLLDAILLFIIGFLIYGPQMLIG 368 (448)
T ss_pred HHHHHHHHHHHh---cccccchHHHHHH----------HHHHHHHHHHHc--CCCccHHHHHHHHHHHHHHHhhHHHHHH
Confidence 455666666655 6788877653322 11221112 222 2222445667777888899999997777
Q ss_pred hhhc
Q 006529 467 SFVG 470 (641)
Q Consensus 467 ~~~g 470 (641)
-...
T Consensus 369 l~a~ 372 (448)
T COG2271 369 LAAA 372 (448)
T ss_pred HHHh
Confidence 5543
No 29
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=28.90 E-value=2.2e+02 Score=32.82 Aligned_cols=51 Identities=20% Similarity=0.473 Sum_probs=31.0
Q ss_pred cchhHHHHHHHHHHHHHHh---hccCCCCc---------chHHHHHHHHHHHHhhhhHHHHHHH
Q 006529 348 GTGVQFFGMMLVTMIFALL---GFLSPSNR---------GGLMTAMLLLWVFMGLFAGYASARL 399 (641)
Q Consensus 348 G~G~Qll~~~~~~l~~a~~---g~lsp~~r---------g~l~t~~i~ly~~~g~~~Gy~S~r~ 399 (641)
-.|+-++..+.+.+ +.++ |.++.... +++.....++|.+.|++.|.+++++
T Consensus 266 ~Ag~~~l~fia~l~-ll~~P~~g~LR~~~tG~l~~SPf~~~iipii~~~Fli~givyG~~~g~i 328 (513)
T TIGR00819 266 IAGVVFIAFIAAIA-LMIIPADGILRDPENGLVAGSPFIKGIVPFIFLFFALPGIAYGIATRSI 328 (513)
T ss_pred HHHHHHHHHHHHHH-HHHHcCCCcccCCCCCCccCChHHHhHHHHHHHHHHHHHHHHHhhcCcc
Confidence 35666666554333 4455 66653111 4556667778888888888887753
No 30
>TIGR00901 2A0125 AmpG-related permease.
Probab=28.18 E-value=3.4e+02 Score=28.37 Aligned_cols=21 Identities=5% Similarity=-0.012 Sum_probs=11.8
Q ss_pred HhhhhHHHHHHHHHhhcCccc
Q 006529 388 MGLFAGYASARLYKLFKGTEW 408 (641)
Q Consensus 388 ~g~~~Gy~S~r~yk~~~g~~W 408 (641)
.+++++..++++.+.++.+++
T Consensus 257 ~~~~g~~~~g~l~~r~g~~~~ 277 (356)
T TIGR00901 257 GAILGGLIGGIIMQPLNILYA 277 (356)
T ss_pred HHHHHHHHHHHHHhhhhHHHH
Confidence 445555666666666654443
No 31
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=27.48 E-value=96 Score=34.76 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=19.2
Q ss_pred CCcchHHHHHHHHHHHHhhhhHHHHHHHHHhhc
Q 006529 372 SNRGGLMTAMLLLWVFMGLFAGYASARLYKLFK 404 (641)
Q Consensus 372 ~~rg~l~t~~i~ly~~~g~~~Gy~S~r~yk~~~ 404 (641)
...|.+.+..-+.=+++..++|+.+-|+-+..+
T Consensus 288 ~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~ 320 (476)
T PLN00028 288 ETAGAIAASFGLMNLFARPAGGYLSDVAARRFG 320 (476)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcC
Confidence 334444444334445667788888888766543
No 32
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=26.97 E-value=5.2e+02 Score=28.79 Aligned_cols=68 Identities=15% Similarity=0.167 Sum_probs=48.1
Q ss_pred ccccCCCCC-ccceeeeecchhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 006529 331 GDVFRPPTN-SDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKL 402 (641)
Q Consensus 331 gDVFR~P~~-~~lls~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~g~~~Gy~S~r~yk~ 402 (641)
-+++|.|+- ..++..+++.|-|+..-+.+.=++.-.. .-+.+.++..+..|=+.++++....||+.+.
T Consensus 205 ~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~----g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr 273 (394)
T COG2814 205 LRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVA----GFSVSAVSLVLLAFGIAGFIGNLLGGRLADR 273 (394)
T ss_pred HHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHcc----CCCHhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 357888874 4556777778888766544444443221 1246778889999999999999999999764
No 33
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=25.61 E-value=1.8e+02 Score=32.10 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=12.6
Q ss_pred chHHHHHHHHHHHHhhhhHHHHHHHH
Q 006529 375 GGLMTAMLLLWVFMGLFAGYASARLY 400 (641)
Q Consensus 375 g~l~t~~i~ly~~~g~~~Gy~S~r~y 400 (641)
|.+.....+.-++++.++|+.+.|+.
T Consensus 300 g~~~~~~~~~~~i~~~~~g~l~d~~~ 325 (465)
T TIGR00894 300 GLLSSLPYLFAWLCSIFAGYLADFLK 325 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334445566666665544
No 34
>PRK12307 putative sialic acid transporter; Provisional
Probab=25.48 E-value=2.6e+02 Score=30.12 Aligned_cols=25 Identities=4% Similarity=-0.115 Sum_probs=16.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhhcC
Q 006529 381 MLLLWVFMGLFAGYASARLYKLFKG 405 (641)
Q Consensus 381 ~i~ly~~~g~~~Gy~S~r~yk~~~g 405 (641)
....+.+.+.++....+++-+.++.
T Consensus 271 ~~~~~~~~~~~g~~~~g~l~dr~~~ 295 (426)
T PRK12307 271 LMTAAAFGTVLGNIVWGLCADRIGL 295 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3345566677777777877776653
No 35
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=24.31 E-value=5.7e+02 Score=29.02 Aligned_cols=67 Identities=24% Similarity=0.201 Sum_probs=32.2
Q ss_pred cchhHHHHHHHHHH-HHHHhhccCCCCcchHHHHHHHHHHHHhh---------hhHHHHHHH-------HHhhcC--ccc
Q 006529 348 GTGVQFFGMMLVTM-IFALLGFLSPSNRGGLMTAMLLLWVFMGL---------FAGYASARL-------YKLFKG--TEW 408 (641)
Q Consensus 348 G~G~Qll~~~~~~l-~~a~~g~lsp~~rg~l~t~~i~ly~~~g~---------~~Gy~S~r~-------yk~~~g--~~W 408 (641)
-+|.|+.+.+.+.+ ++-...++.+.=+.-+...+++++.+.|+ +.|..+|-+ |..||. ..|
T Consensus 517 Pa~sQ~Gila~l~vEl~qs~~il~~~w~a~~~Lia~~L~L~iGliPWiDN~aHlfG~i~GLl~s~~~~PYi~Fg~~d~yr 596 (652)
T KOG2290|consen 517 PAGSQFGILACLFVELFQSWQILERPWRAFFHLIATLLVLCIGLIPWIDNWAHLFGTIFGLLTSIIFLPYIDFGDFDLYR 596 (652)
T ss_pred CcccccchHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHhhccccccchhhhh
Confidence 36888876543322 23334444432233333344444544443 234444433 455765 566
Q ss_pred hhhhhh
Q 006529 409 KRIAFR 414 (641)
Q Consensus 409 ~~~~~l 414 (641)
|++-++
T Consensus 597 Kr~~il 602 (652)
T KOG2290|consen 597 KRFYIL 602 (652)
T ss_pred hHHHHH
Confidence 775443
No 36
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=22.93 E-value=1.5e+02 Score=31.80 Aligned_cols=90 Identities=20% Similarity=0.199 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhhhccchhhHHHHHHHHHHHHHhhccCCCccChhHHHHHHHHHHH
Q 006529 378 MTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFG 457 (641)
Q Consensus 378 ~t~~i~ly~~~g~~~Gy~S~r~yk~~~g~~W~~~~~lt~~l~P~~~~~i~~~lN~~~~~~~Ss~aipf~ti~~l~~lw~~ 457 (641)
+..+++.|.++..+++|+- +.+|.+ ++|.+-.-.+..++-.+-+++.+++-.+...--++..+||-.-+ +-++
T Consensus 45 ligai~~~li~~~~~~~~~-~~~~~l--e~~i~k~~~~~ilf~tiGLiiGLlia~l~~~pL~~~~ip~~~~i----i~vi 117 (356)
T COG4956 45 LIGAIIFFLISFWFGKYVL-NWLKRL--EEQIRKLPVTTILFGTIGLIIGLLIAVLLSSPLFLLPIPFISTI----IPVI 117 (356)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhHHhhCCccHHHhH----HHHH
Confidence 4567888888888888754 355555 34443334444444444444444433333333344456643321 2234
Q ss_pred hhccchhhhhhhcccCC
Q 006529 458 ISVPLVYVGSFVGFKKP 474 (641)
Q Consensus 458 vs~PL~~lG~~~g~k~~ 474 (641)
+++-|.++|.-+|.|+.
T Consensus 118 ~t~il~y~G~~~~~k~~ 134 (356)
T COG4956 118 LTIILAYFGFQLADKKR 134 (356)
T ss_pred HHHHHHHHhhHHhhhhh
Confidence 56667788888887754
No 37
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=22.76 E-value=2.7e+02 Score=27.45 Aligned_cols=22 Identities=18% Similarity=0.387 Sum_probs=15.9
Q ss_pred HHHHHHHhhccchhhhhhhccc
Q 006529 451 LIVLWFGISVPLVYVGSFVGFK 472 (641)
Q Consensus 451 l~~lw~~vs~PL~~lG~~~g~k 472 (641)
.+.+.+.+.+-..++|+++|.|
T Consensus 157 ~~~~~~~~~~v~a~lG~~lG~k 178 (186)
T PF09605_consen 157 MLIIIIIITFVGALLGALLGKK 178 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555677788899999976
No 38
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=22.31 E-value=78 Score=24.32 Aligned_cols=29 Identities=10% Similarity=0.253 Sum_probs=23.8
Q ss_pred CCCCCCeEEEEEecccCCCCCcccccccC
Q 006529 38 DFVKGDELYVKVNKLTSTKTQLPYSYYSI 66 (641)
Q Consensus 38 ~Y~~gd~V~l~vNkl~s~~t~~~y~Yy~l 66 (641)
.=+.||.|++.|-.-.+...+.||.++.|
T Consensus 8 kaK~Ge~I~ltVt~kda~G~pv~n~~f~l 36 (47)
T PF05688_consen 8 KAKVGETIPLTVTVKDANGNPVPNAPFTL 36 (47)
T ss_pred heecCCeEEEEEEEECCCCCCcCCceEEE
Confidence 45789999999988888777788887765
No 39
>PF14093 DUF4271: Domain of unknown function (DUF4271)
Probab=22.20 E-value=7.6e+02 Score=24.31 Aligned_cols=16 Identities=0% Similarity=-0.060 Sum_probs=9.3
Q ss_pred HHHHhhhhHHHHHHHH
Q 006529 385 WVFMGLFAGYASARLY 400 (641)
Q Consensus 385 y~~~g~~~Gy~S~r~y 400 (641)
..+++.+.+|...+.-
T Consensus 89 ~~i~~~~~~~~~~K~~ 104 (208)
T PF14093_consen 89 GIIFLIVFLFFLLKFI 104 (208)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3446666676666543
No 40
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=22.18 E-value=3.6e+02 Score=28.94 Aligned_cols=121 Identities=17% Similarity=0.222 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhhhhcCceEEeccccCCCCCcccee-------eeecchhHHH--H-
Q 006529 286 LMIVLFLSGMVAMIMLRTLYRDISKYNELETQEEAQEETGWKLVHGDVFRPPTNSDLLC-------VYVGTGVQFF--G- 355 (641)
Q Consensus 286 ~~ivl~L~~~v~~Il~r~l~~D~~~yn~~~~~~~~~ee~GWKlvhgDVFR~P~~~~lls-------~lvG~G~Qll--~- 355 (641)
..-+++|.+.+.+...-++-+|..-|.+-.|+|++....++-++...=- +|+-...++ +++|...+.. .
T Consensus 44 ~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~-k~~~~l~l~l~~~~g~~llg~~~~~~s~~~ 122 (303)
T COG1575 44 LVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSM-KPALILSLALFLLAGLALLGVILAALSDWL 122 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3344555556666666667777776766544333334455544422111 122111111 1222221111 0
Q ss_pred HHHHHHHHHHhhccC---CCCcchHHHHHHHHHHHHhhhhHHHHHHHHHhhcCccch
Q 006529 356 MMLVTMIFALLGFLS---PSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWK 409 (641)
Q Consensus 356 ~~~~~l~~a~~g~ls---p~~rg~l~t~~i~ly~~~g~~~Gy~S~r~yk~~~g~~W~ 409 (641)
...+.++..+.|.++ |..-|..--.-+++++++|.++ +.+..|-+-+.-.|-
T Consensus 123 ~l~lG~l~~~~g~~YTgGp~PlgY~gLGEi~~~vffG~l~--v~g~~yiqt~~~~~~ 177 (303)
T COG1575 123 VLLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGPLI--VLGAYYIQTGRLSWA 177 (303)
T ss_pred HHHHHHHHHHheeeeccCCcCcccCCHHHHHHHHHHHHHH--HHHHHHHhcccchHH
Confidence 112222223445543 3333444445566677777765 566667664444443
No 41
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=22.07 E-value=1.2e+02 Score=33.66 Aligned_cols=21 Identities=10% Similarity=0.237 Sum_probs=12.2
Q ss_pred HHHHHHhhhhHHHHHHHHHhh
Q 006529 383 LLWVFMGLFAGYASARLYKLF 403 (641)
Q Consensus 383 ~ly~~~g~~~Gy~S~r~yk~~ 403 (641)
.++.+.++++..++|.+-..+
T Consensus 296 ~~~~~~~~~g~~~~G~l~dr~ 316 (452)
T PRK11273 296 FLYEYAGIPGTLLCGWMSDKV 316 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666554
No 42
>PF12271 Chs3p: Chitin synthase III catalytic subunit; InterPro: IPR022057 This family of proteins is found in eukaryotes. Proteins in this family are typically between 288 and 332 amino acids in length. This family is the catalytic domain of chitin synthase III. Chitin is a major component of fungal cell walls and this enzyme is responsible for its formation.
Probab=21.89 E-value=9.9e+02 Score=25.53 Aligned_cols=121 Identities=18% Similarity=0.193 Sum_probs=72.9
Q ss_pred chhHHHHHHHHHH---HHHHhhccCCCCcchHHHHHHHHH--HHHhhhhHHHHHHHHHhhcC---ccchhhhhhhccchh
Q 006529 349 TGVQFFGMMLVTM---IFALLGFLSPSNRGGLMTAMLLLW--VFMGLFAGYASARLYKLFKG---TEWKRIAFRTAITFP 420 (641)
Q Consensus 349 ~G~Qll~~~~~~l---~~a~~g~lsp~~rg~l~t~~i~ly--~~~g~~~Gy~S~r~yk~~~g---~~W~~~~~lt~~l~P 420 (641)
+++|+.......- +-+.+|+. -...|+..+..++-- ++..+.+||+|--..|.+.| ++-.-....-..++|
T Consensus 118 tAi~~g~~~a~~w~Ll~Ng~vgfQ-l~eDGT~~Sl~ll~~ss~~~f~~t~~isl~Tf~~w~~~~~~~~~~~Lfvl~~l~p 196 (293)
T PF12271_consen 118 TAIQIGLISATCWCLLINGFVGFQ-LWEDGTPLSLWLLRGSSLILFIGTFYISLDTFKSWTGYLSPTNTIALFVLYYLLP 196 (293)
T ss_pred HHHHHHHHHHHHHHHHHhhhheee-eccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCcchhHHHHHHHH
Confidence 5677766444333 33355555 246777666433322 22345667777767776655 222223455566889
Q ss_pred hHHHHHHHHHHHHHhhccCCCccChhHHHHHHHHHHHhhccchhhhhhhc
Q 006529 421 GIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVG 470 (641)
Q Consensus 421 ~~~~~i~~~lN~~~~~~~Ss~aipf~ti~~l~~lw~~vs~PL~~lG~~~g 470 (641)
++.+.+++++-.++...-=-.--|.+.++.-.+++..-++-.-.++..++
T Consensus 197 ~i~l~~Y~v~q~~lv~~vL~e~wp~g~i~~~~~fFv~gQv~~y~~S~~IC 246 (293)
T PF12271_consen 197 AIFLVIYVVLQLILVLRVLGERWPLGYILLGVFFFVAGQVFLYVFSTHIC 246 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 99999999988877665555567778877776666655555544544444
No 43
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=21.83 E-value=2.6e+02 Score=27.51 Aligned_cols=101 Identities=16% Similarity=0.245 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhhhh--HHHHHHH-HHh-------hcCccchhhhhhhccchhhHHHH
Q 006529 356 MMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFA--GYASARL-YKL-------FKGTEWKRIAFRTAITFPGIVSA 425 (641)
Q Consensus 356 ~~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~g~~~--Gy~S~r~-yk~-------~~g~~W~~~~~lt~~l~P~~~~~ 425 (641)
+..++++|..+....++.+=--.-..++-.+++++.- |+.-++= -|. +..+-|++..+..+ +.|.
T Consensus 54 s~~~v~vFG~lTl~f~~d~FIKwK~TIi~~lFa~~Llgs~~~~~k~lik~~lg~~l~Lp~~~W~~Ln~~W~-----~FFl 128 (180)
T COG2917 54 SGVVVVVFGGLTLIFHNDTFIKWKPTIIYWLFALVLLGSQFLFKKPLIKRMLGKELQLPEEVWRKLNLRWA-----LFFL 128 (180)
T ss_pred HHHHHHHhchhHhhccCcceEEeeHHHHHHHHHHHHHHHHHHhcCcHHHHHHHhhhCCCHHHHHHHHHHHH-----HHHH
Confidence 3445666666666654443322222333233333332 3322221 121 34477887766655 5677
Q ss_pred HHHHHHHHHhhccCC-CccChhHH--HHHHHHHHHhhcc
Q 006529 426 IFFVLNALIWGQKSS-GAVPFGTM--FALIVLWFGISVP 461 (641)
Q Consensus 426 i~~~lN~~~~~~~Ss-~aipf~ti--~~l~~lw~~vs~P 461 (641)
...++|...|.+-|+ .=+-|+.. +.+-.+..+++.|
T Consensus 129 f~ai~N~yV~~~fs~d~WV~FKvfG~~~ltlvf~l~q~~ 167 (180)
T COG2917 129 FCAIANEYVARNFSTDTWVNFKVFGLTPLTLIFTLIQGP 167 (180)
T ss_pred HHHHHHHHHHHhCCCCeEEEeehhhhhHHHHHHHHHHHH
Confidence 788999999999999 44666552 3344444445444
Done!