Query 006529
Match_columns 641
No_of_seqs 131 out of 656
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 19:03:50 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006529.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2154-2158//hhsearch_pdb/006529hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 1.0 1 1 15.8 2.2 57 276-338 7-68 (79)
2 3o7q_A L-fucose-proton symport 1.0 1 1 15.6 3.6 13 383-395 122-134 (438)
3 2iub_A CORA, divalent cation t 1.0 1 1 15.2 1.0 29 445-473 299-327 (363)
4 2qjy_A Cytochrome B; cytochrom 1.0 1 1 14.8 3.6 24 417-440 199-222 (445)
5 4ev6_A Magnesium transport pro 1.0 1 1 14.1 2.4 30 445-474 275-304 (339)
6 1sdi_A ORF-23, hypothetical pr 1.0 1 1 13.9 1.9 53 358-410 134-191 (213)
7 3bbo_Z Ribosomal protein L29; 1.0 1 1 13.8 0.6 39 300-340 106-154 (173)
8 3cx5_C Cytochrome B-C1 complex 1.0 1 1 13.6 4.8 97 344-441 79-208 (385)
9 3rqw_A ELIC pentameric ligand 1.0 1 1 13.0 5.7 114 351-466 206-319 (322)
10 1vf5_A Cytochrome B6; photosyn 1.0 1 1 12.8 2.1 100 528-627 31-148 (215)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=15.81 Aligned_cols=57 Identities=18% Similarity=0.467 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHCCHHHHHHHHHHCCCEEEECCCCCCCC
Q ss_conf 30134689999999999999999999986-----2234321000234566561285078413357899
Q 006529 276 QIHWFSIVNSLMIVLFLSGMVAMIMLRTL-----YRDISKYNELETQEEAQEETGWKLVHGDVFRPPT 338 (641)
Q Consensus 276 ~ihw~SiiNS~iivl~L~~~v~~Il~r~l-----~~D~~~yn~~~~~~~~~ee~GWKlvhgDVFR~P~ 338 (641)
..+...|+-.++..++|.+++..++.|.+ ||..+|+++ ++....|+.-....||+|.
T Consensus 7 ~~n~~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEk------E~~~~~w~~~~NPlyk~~t 68 (79)
T 2knc_B 7 GPDILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEE------ERARAKWDTANNPLYKEAT 68 (79)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHTTTTCCHHHHCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHCCCCCCCCCCCCCCC
T ss_conf 9885115999999999999999999999999999999999999------9986324567898826876
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=1.00 E-value=1 Score=15.60 Aligned_cols=13 Identities=8% Similarity=-0.046 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999973343788
Q 006529 383 LLWVFMGLFAGYA 395 (641)
Q Consensus 383 ~~y~~~g~isGY~ 395 (641)
+...+.|+-.|-.
T Consensus 122 ~~~~l~G~~~~~~ 134 (438)
T 3o7q_A 122 VGLFIIAAGLGCL 134 (438)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999998307874
No 3
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=1.00 E-value=1 Score=15.22 Aligned_cols=29 Identities=14% Similarity=0.371 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHCCCC
Q ss_conf 36899999999985200000110112368
Q 006529 445 FGTMFALIVLWFGISVPLVYVGSFVGFKK 473 (641)
Q Consensus 445 f~ti~~l~~lw~~v~~PL~~iG~~~g~k~ 473 (641)
-..++..+..|-.|-+|+|++.|++|-+.
T Consensus 299 ~N~imk~LTiit~IflP~T~IaGiyGMNf 327 (363)
T 2iub_A 299 TNEVMKVLTIIATIFMPLTFIAGIYGMNF 327 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999999985613457
No 4
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=1.00 E-value=1 Score=14.76 Aligned_cols=24 Identities=8% Similarity=0.108 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 211368999999998987651677
Q 006529 417 ITFPGIVSAIFFVLNALIWGQKSS 440 (641)
Q Consensus 417 ~l~P~~~~~i~~~lN~i~~~~~Ss 440 (641)
.++|.++.+...+==.++...||+
T Consensus 199 flLPfii~~lv~lHl~~LH~~GS~ 222 (445)
T 2qjy_A 199 YLLPFVIAALVAIHIWAFHSTGNN 222 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999999888887238899
No 5
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=1.00 E-value=1 Score=14.10 Aligned_cols=30 Identities=7% Similarity=0.218 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
Q ss_conf 368999999999852000001101123689
Q 006529 445 FGTMFALIVLWFGISVPLVYVGSFVGFKKP 474 (641)
Q Consensus 445 f~ti~~l~~lw~~v~~PL~~iG~~~g~k~~ 474 (641)
-..++..+.+|-.|-+|++++.|++|-+.+
T Consensus 275 ~N~~mk~LTiit~IflP~T~IaGiyGMNf~ 304 (339)
T 4ev6_A 275 MNQIMKILTMVTTIFAVPMWITGIYGMNFS 304 (339)
T ss_dssp HHHHHHHHHHHHHHSSHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999999999999999999953427579
No 6
>1sdi_A ORF-23, hypothetical protein YCFC; structural genomics, paracytosis, peripheral membrane protein, PSI, protein structure initiative; 1.65A {Escherichia coli} SCOP: a.198.1.1 PDB: 1qz4_A
Probab=1.00 E-value=1 Score=13.94 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=33.7
Q ss_pred HHHHHHHHHHCCCCCC--CC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 9999999850468789--61---59999999999973343788899998514965035
Q 006529 358 LVTMIFALLGFLSPSN--RG---GLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKR 410 (641)
Q Consensus 358 ~~~l~~a~~g~~~p~~--rg---~l~t~~i~~y~~~g~isGY~S~~~yk~~~g~~W~~ 410 (641)
+..+-.-.++-+.|.. +| .|-...+.-=+=.-.+||-=|+.++++.||++|+.
T Consensus 134 lA~iY~dtIS~l~pRIqV~G~p~~Lqq~~~~~kIRAlLLAGIRsAvLWRQ~GG~Rwql 191 (213)
T 1sdi_A 134 MAAIYVDVISPLGPRIQVTGSPAVLQSPQVQAKVRATLLAGIRAAVLWHQVGGGRLQL 191 (213)
T ss_dssp HHHHHHHHTGGGSSCCCCCSCHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHCCCCCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 9999998412689965873887884791079999999999999999999808951567
No 7
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=1.00 E-value=1 Score=13.80 Aligned_cols=39 Identities=21% Similarity=0.434 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHCCHHHH----H--H----HHHHCCCEEEECCCCCCCCCC
Q ss_conf 999862234321000234----5--6----656128507841335789985
Q 006529 300 MLRTLYRDISKYNELETQ----E--E----AQEETGWKLVHGDVFRPPTNS 340 (641)
Q Consensus 300 l~r~l~~D~~~yn~~~~~----~--~----~~ee~GWKlvhgDVFR~P~~~ 340 (641)
-+|.+||||+|-..+..+ + + ---+.-||. .-|-|||+-.
T Consensus 106 rIR~VRRdIARIkTVLrErel~~~~~kr~SRk~~~~~k~--s~~~~ppp~~ 154 (173)
T 3bbo_Z 106 DFRRMKKQVARMLTVKREREIKEGIKKRLSRKLDRQWKK--SIVPRPPPSL 154 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--CCCCCCCCCH
T ss_conf 899989999999999999998732014577888888620--3204699851
No 8
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=1.00 E-value=1 Score=13.60 Aligned_cols=97 Identities=21% Similarity=0.246 Sum_probs=42.8
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHH--HHHHHHHH---------HHHH-HH---------
Q ss_conf 00011104889999999999985046878-961599999999999--73343788---------8999-98---------
Q 006529 344 CVYVGTGVQFFGMMLVTMIFALLGFLSPS-NRGGLMTAMLLLWVF--MGLFAGYA---------SARL-YK--------- 401 (641)
Q Consensus 344 s~lvG~G~Qll~~~~~~l~~a~~g~~~p~-~rg~l~t~~i~~y~~--~g~isGY~---------S~~~-yk--------- 401 (641)
-.+=..|+++++..+..=+.-.+-.-+-. .|-..-..+++++.+ ...+-||+ ++.. -.
T Consensus 79 R~~H~~gAs~ffi~iylHi~Rglyygsy~~Pr~~~W~~Gv~l~ll~m~~aF~GYvLPwgQmS~WgatViTnLlsaIP~iG 158 (385)
T 3cx5_C 79 RYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVG 158 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHHHHHHHGGGGSTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 98899899999999999999887010027877541432099999999999986201588540179999999988860063
Q ss_pred ------HHCCCC-----CHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf ------514965-----0355543202113689999999989876516777
Q 006529 402 ------LFKGTE-----WKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSG 441 (641)
Q Consensus 402 ------~~~g~~-----W~~~~~lt~~l~P~~~~~i~~~lN~i~~~~~Ss~ 441 (641)
.+||.. -.|.-.+- .++|.++.+...+==..+...||+.
T Consensus 159 ~~lv~wiwGGfsV~~~TL~RFf~lH-fllPfii~~lv~iHl~~LH~~Gs~n 208 (385)
T 3cx5_C 159 NDIVSWLWGGFSVSNPTIQRFFALH-YLVPFIIAAMVIMHLMALHIHGSSN 208 (385)
T ss_dssp HHHHHHHHTSSSSCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 7878763377312431478999999-9999999999999999996558998
No 9
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=1.00 E-value=1 Score=12.95 Aligned_cols=114 Identities=12% Similarity=-0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 48899999999999850468789615999999999997334378889999851496503555432021136899999999
Q 006529 351 VQFFGMMLVTMIFALLGFLSPSNRGGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVL 430 (641)
Q Consensus 351 ~Qll~~~~~~l~~a~~g~~~p~~rg~l~t~~i~~y~~~g~isGY~S~~~yk~~~g~~W~~~~~lt~~l~P~~~~~i~~~l 430 (641)
+|+.+-.+.+.+++.+++.-| ..|.-++.++........+...++..+=+.=. -...-.-+..+.++-...++...+.
T Consensus 206 ~~~~iP~~li~~ls~~sF~lp-~~~~Rv~l~it~lL~~~~~~~~~~~~lP~~s~-vp~i~~~~~~~~~~v~~sll~~~~v 283 (322)
T 3rqw_A 206 WSFILPLGLIIAASWSVFWLE-SFSERLQTSFTLMLTVVAYAFYTSNILPRLPY-TTVIDQMIIAGYGSIFAAILLIIFA 283 (322)
T ss_dssp HHTHHHHHHHHHHHHGGGGCS-SHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSS-CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EHHHHHHHHHHHHHHHHHCCC-CCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 027889999999989973157-88874899975699999999888602898542-5899999999999999999999999
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 898765167776673689999999998520000011
Q 006529 431 NALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVG 466 (641)
Q Consensus 431 N~i~~~~~Ss~aipf~ti~~l~~lw~~v~~PL~~iG 466 (641)
+.+..-..++.++|-..-..+....+.+++-|..-|
T Consensus 284 ~~l~~~~~~~~~~p~w~r~~fl~~~~~~~~~l~~~~ 319 (322)
T 3rqw_A 284 HHRQANGVEDDLLIQRCRLAFPLGFLAIGCVLVIRG 319 (322)
T ss_dssp HHSSSSSSCCCHHHHTCTTHHHHHHHHTTSSSCC--
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998726864467663899998999999999999844
No 10
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A* 2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Probab=1.00 E-value=1 Score=12.76 Aligned_cols=100 Identities=15% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHH-----HHHHHEE
Q ss_conf 157888799999999998877-----------677543411246788731110010258116789999-----8854102
Q 006529 528 QFYYIFGFLFLVFVILIVTCA-----------EITIVLCYFQLCSEDYQWWWRSYLTSGSSALYLFLY-----ATFYFFT 591 (641)
Q Consensus 528 ~~yy~fgfL~~~~iil~i~~a-----------~vsIi~tY~~L~~Edy~WwWrSF~~~gs~~~y~f~Y-----si~y~~~ 591 (641)
+..+.||.++...+++-+++. +.+--.+-.....-||-|--|+.-.-|++.+++.+| .+||-..
T Consensus 31 s~~w~fGsll~~~l~iqi~TG~~Lam~Y~p~~~~Af~Sv~~I~~dv~~GwliR~~H~~gAs~ffi~~ylHi~Rglyygsy 110 (215)
T 1vf5_A 31 NIFYCLGGITLTCFLIQFATGFAMTFYYKPTVTEAYASVQYIMNEVSFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGF 110 (215)
T ss_dssp CSGGGHHHHHHHHHHHHHHHHHHHTTTCCCSTTTHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 79998799999999999999999995745986688999999986145604231061879999999999999999975100
Q ss_pred E--EEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2--00146310026789999999999997201677989
Q 006529 592 K--LEITKLVSGILYFGYMLIASYAFFVLTGTIGFYAC 627 (641)
Q Consensus 592 ~--~~~~g~~~~~~yf~ys~l~s~~~~l~~G~iGflas 627 (641)
+ -+..-.+..++++.-++..=...-|-.|-.+|.+.
T Consensus 111 ~~p~~~~W~~Gv~l~~l~m~~aF~GYvLPwgqmS~wga 148 (215)
T 1vf5_A 111 KKPRELTWISGVILAVITVSFGVTGYSLPWDQVGYWAV 148 (215)
T ss_dssp SSSCSHHHHHHHHHHHHHHHHHHHHTTTTCBHHHHHHH
T ss_pred CCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 35787600768999999999999023247786311467
Done!