Query 006529
Match_columns 641
No_of_seqs 131 out of 656
Neff 6.6
Searched_HMMs 13730
Date Tue Mar 26 19:07:28 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006529.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2154-2158//hhsearch_scop/006529hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sdia_ a.198.1.1 (A:) Hypothe 22.6 17 0.0012 13.0 1.9 54 358-411 134-192 (213)
2 d1pv7a_ f.38.1.2 (A:) Lactose 13.7 27 0.002 11.7 1.3 20 610-629 364-383 (417)
3 d1vqoq1 b.34.5.1 (Q:1-95) Ribo 6.6 50 0.0036 10.1 2.5 27 37-65 31-57 (95)
4 d1j3ea_ d.228.1.1 (A:) Replica 5.6 61 0.0044 9.5 0.1 14 483-496 68-81 (115)
5 d1ppjc2 f.21.1.2 (C:15-260) Mi 4.7 76 0.0055 9.0 2.0 110 345-470 67-181 (246)
6 d2iuba2 f.17.3.1 (A:286-349) M 4.7 76 0.0055 9.0 2.0 26 448-473 5-30 (64)
7 d1puca_ d.97.1.1 (A:) suc1 {Fi 4.2 88 0.0064 8.6 1.1 22 320-343 75-96 (101)
8 d3cnxa1 d.17.4.17 (A:5-157) Un 4.1 89 0.0065 8.5 0.9 17 246-262 125-141 (153)
9 d1oi2a_ c.119.1.2 (A:) Dihydro 3.7 1E+02 0.0074 8.2 1.3 24 38-61 262-285 (347)
10 d1cksa_ d.97.1.1 (A:) CksHs2 { 3.7 1E+02 0.0075 8.2 1.2 17 325-343 52-68 (74)
No 1
>d1sdia_ a.198.1.1 (A:) Hypothetical protein YcfC {Escherichia coli [TaxId: 562]}
Probab=22.59 E-value=17 Score=12.97 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=34.9
Q ss_pred HHHHHHHHHHCCCCC--CCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 999999985046878--961---599999999999733437888999985149650355
Q 006529 358 LVTMIFALLGFLSPS--NRG---GLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRI 411 (641)
Q Consensus 358 ~~~l~~a~~g~~~p~--~rg---~l~t~~i~~y~~~g~isGY~S~~~yk~~~g~~W~~~ 411 (641)
+..+--..++-+.|. -+| .|-.....-=+=+-.+||-=|+.+|++.||++|+..
T Consensus 134 la~iY~dtIS~l~pRI~V~G~~~~L~~~~~a~kIRALLLAGIRaavLWrQ~GG~Rwqll 192 (213)
T d1sdia_ 134 MAAIYVDVISPLGPRIQVTGSPAVLQSPQVQAKVRATLLAGIRAAVLWHQVGGGRLQLM 192 (213)
T ss_dssp HHHHHHHHTGGGSSCCCCCSCHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHCCCCCEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 99999997433698078848788826952699999999999999999999289605678
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=13.69 E-value=27 Score=11.69 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999720167798999
Q 006529 610 IASYAFFVLTGTIGFYACFW 629 (641)
Q Consensus 610 l~s~~~~l~~G~iGflas~~ 629 (641)
+.....+.+....|+-..++
T Consensus 364 i~~~~~G~l~~~~g~~~~~~ 383 (417)
T d1pv7a_ 364 FMSVLAGNMYESIGFQGAYL 383 (417)
T ss_dssp HHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHH
T ss_conf 99999999999979899999
No 3
>d1vqoq1 b.34.5.1 (Q:1-95) Ribosomal proteins L21e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=6.64 E-value=50 Score=10.07 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=17.6
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 78899993899983035799886434545
Q 006529 37 QDFVKGDELYVKVNKLTSTKTQLPYSYYS 65 (641)
Q Consensus 37 ~~Y~~gd~V~l~vN~i~s~~~~~~Y~Yy~ 65 (641)
+.|++||.|.+.+|- |...-+|+.+|+
T Consensus 31 ~~y~~GD~V~I~idp--sv~kGmPh~~yh 57 (95)
T d1vqoq1 31 EEFDDGEKVHLKIDP--SVPNGRFHPRFD 57 (95)
T ss_dssp CCCCTTCEEEECCCT--TCCSSCCCGGGT
T ss_pred EECCCCCEEEEEECC--CEECCCCCEEEC
T ss_conf 660389899998468--725186310342
No 4
>d1j3ea_ d.228.1.1 (A:) Replication modulator SeqA, C-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=5.60 E-value=61 Score=9.54 Aligned_cols=14 Identities=14% Similarity=0.719 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 78899999997654
Q 006529 483 NKIPRQIPEQAWYM 496 (641)
Q Consensus 483 n~ipR~IP~~~~y~ 496 (641)
..-||+||..|++.
T Consensus 68 ~tkPk~Ip~TpfWV 81 (115)
T d1j3ea_ 68 QTKPKHVPGTPYWV 81 (115)
T ss_dssp SCCCEECTTSSCEE
T ss_pred CCCCCCCCCCCEEE
T ss_conf 89976399999577
No 5
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.72 E-value=76 Score=8.98 Aligned_cols=110 Identities=18% Similarity=0.201 Sum_probs=45.0
Q ss_pred EEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHC-CCCCHHHHHHHCCC--H
Q ss_conf 0011104889999999999985046878961599999999999--73343788899998514-96503555432021--1
Q 006529 345 VYVGTGVQFFGMMLVTMIFALLGFLSPSNRGGLMTAMLLLWVF--MGLFAGYASARLYKLFK-GTEWKRIAFRTAIT--F 419 (641)
Q Consensus 345 ~lvG~G~Qll~~~~~~l~~a~~g~~~p~~rg~l~t~~i~~y~~--~g~isGY~S~~~yk~~~-g~~W~~~~~lt~~l--~ 419 (641)
.+--.|+++++..+.+=++-.+-.-+ .++......++.++.+ ...+-||+=- ++ -..|-. .+.|+.+ +
T Consensus 67 ~~H~~gas~~~~~~~lHm~r~~~~~s-y~~~~~w~~G~~l~~l~m~~af~GY~Lp-----w~qms~wa~-~V~t~l~~~i 139 (246)
T d1ppjc2 67 YMHANGASMFFICLYMHVGRGLYYGS-YTFLETWNIGVILLLTVMATAFMGYVLP-----WGQMSFWGA-TVITNLLSAI 139 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTG-GGSHHHHHHHHHHHHHHHHHHHHHHHTT-----CBHHHHHHH-HHHHGGGGGS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHEECCCC-----CCCHHHHHH-HHHHHHHHHH
T ss_conf 13374899999999999988887158-6545899999999999999988013478-----851368999-9999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHC
Q ss_conf 368999999998987651677766736899999999985200000110112
Q 006529 420 PGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVG 470 (641)
Q Consensus 420 P~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~v~~PL~~iG~~~g 470 (641)
|. .+-.+ -...|.-.+ +.-.|+--.+++-++ +|..+++-...
T Consensus 140 P~--iG~~l--~~wi~GG~~---v~~~TL~RFf~lH~l--LPfiil~li~~ 181 (246)
T d1ppjc2 140 PY--IGTNL--VEWIWGGFS---VDKATLTRFFAFHFI--LPFIIMAIAMV 181 (246)
T ss_dssp TT--THHHH--HHHHHTSSS---SCHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HH--HHHHH--HHHHCCCCC---CCCCHHHHHHHHHHH--HHHHHHHHHHH
T ss_conf 98--78877--864017860---774168899999999--89999999999
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.70 E-value=76 Score=8.96 Aligned_cols=26 Identities=15% Similarity=0.438 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCC
Q ss_conf 99999999985200000110112368
Q 006529 448 MFALIVLWFGISVPLVYVGSFVGFKK 473 (641)
Q Consensus 448 i~~l~~lw~~v~~PL~~iG~~~g~k~ 473 (641)
.+..+..+-.+-+|++++.|++|-+.
T Consensus 5 ~mk~lT~it~iflP~t~i~gifGMN~ 30 (64)
T d2iuba2 5 VMKVLTIIATIFMPLTFIAGIYGMNF 30 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999996631677
No 7
>d1puca_ d.97.1.1 (A:) suc1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=4.16 E-value=88 Score=8.57 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=16.6
Q ss_pred HHHHCCCEEEECCCCCCCCCCCCE
Q ss_conf 656128507841335789985310
Q 006529 320 AQEETGWKLVHGDVFRPPTNSDLL 343 (641)
Q Consensus 320 ~~ee~GWKlvhgDVFR~P~~~~lL 343 (641)
.|-..|| +|-.+++|-+|.+||
T Consensus 75 IqqS~GW--~Hymih~pEPhiLLF 96 (101)
T d1puca_ 75 ITQSLGW--EMYEVHVPEPHILLF 96 (101)
T ss_dssp CCCCSSC--CCCCCCCCCTTCCCC
T ss_pred CCCCCCC--EEEEEECCCCEEEEE
T ss_conf 3668895--752330899618987
No 8
>d3cnxa1 d.17.4.17 (A:5-157) Uncharacterized protein SAV4671 {Streptomyces avermitilis [TaxId: 33903]}
Probab=4.13 E-value=89 Score=8.54 Aligned_cols=17 Identities=12% Similarity=0.272 Sum_probs=7.4
Q ss_pred EEEEEEEEEEEECCCCC
Q ss_conf 89999999995415420
Q 006529 246 EIIFTYDVEFQESDVKW 262 (641)
Q Consensus 246 ~i~fTYSV~w~~s~~~w 262 (641)
...-.++.-|++.+-.|
T Consensus 125 ~~~~r~T~v~~k~dg~W 141 (153)
T d3cnxa1 125 GQLVVATNVFRRTPDGW 141 (153)
T ss_dssp EEEEEEEEEEECCTTCC
T ss_pred CEEEEEEEEEEEECCEE
T ss_conf 20289999999989999
No 9
>d1oi2a_ c.119.1.2 (A:) Dihydroxyacetone kinase subunit K, DhaK {Escherichia coli [TaxId: 562]}
Probab=3.70 E-value=1e+02 Score=8.19 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=0.0
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 889999389998303579988643
Q 006529 38 DFVKGDELYVKVNKLTSTKTQLPY 61 (641)
Q Consensus 38 ~Y~~gd~V~l~vN~i~s~~~~~~Y 61 (641)
..++||+|-++||.++.....+-|
T Consensus 262 ~~~~gd~v~vlVN~LG~ts~lEl~ 285 (347)
T d1oi2a_ 262 PLQSGDRVIALVNNLGATPLSELY 285 (347)
T ss_dssp CCCTTCEEEEEEEECBSCCHHHHH
T ss_pred CCCCCCEEEEEECCCCCCCHHHHH
T ss_conf 778999699997588997499999
No 10
>d1cksa_ d.97.1.1 (A:) CksHs2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.67 E-value=1e+02 Score=8.16 Aligned_cols=17 Identities=35% Similarity=0.690 Sum_probs=0.0
Q ss_pred CCEEEECCCCCCCCCCCCE
Q ss_conf 8507841335789985310
Q 006529 325 GWKLVHGDVFRPPTNSDLL 343 (641)
Q Consensus 325 GWKlvhgDVFR~P~~~~lL 343 (641)
|| +|-.+++|-++.++|
T Consensus 52 GW--~Hym~h~pEphiLlf 68 (74)
T d1cksa_ 52 GW--VHYMIHEPEPHILLF 68 (74)
T ss_dssp TC--CCCBCCCCCCCCCCC
T ss_pred CC--EEEEEECCCCEEEEE
T ss_conf 94--875550899618998
Done!