Query 006530
Match_columns 641
No_of_seqs 180 out of 2437
Neff 9.1
Searched_HMMs 29240
Date Tue Mar 26 18:08:39 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006530.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2159-2162//hhsearch_pdb/006530hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g7s_A Long-chain-fatty-acid-- 1.0 1 1 563.4 38.5 506 1-640 1-532 (549)
2 3rix_A Luciferase, luciferin 4 1.0 1 1 563.0 37.7 497 21-640 19-531 (550)
3 3tsy_A Fusion protein 4-coumar 1.0 1 1 562.6 32.9 492 23-640 62-572 (979)
4 3ni2_A 4-coumarate:COA ligase; 1.0 1 1 560.6 40.7 484 23-640 23-525 (536)
5 1v25_A Long-chain-fatty-acid-C 1.0 1 1 554.6 37.4 483 23-640 19-526 (541)
6 3etc_A AMP-binding protein; ad 1.0 1 1 553.2 42.2 491 25-640 59-569 (580)
7 2d1s_A Luciferase, luciferin 4 1.0 1 1 553.2 43.4 488 27-640 31-533 (548)
8 1pg4_A Acetyl-COA synthetase; 1.0 1 1 553.1 43.7 499 23-640 77-611 (652)
9 4fuq_A Malonyl COA synthetase; 1.0 1 1 552.7 36.1 477 27-640 5-490 (503)
10 3o83_A Peptide arylation enzym 1.0 1 1 551.5 35.5 484 22-640 30-530 (544)
No 1
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=1.00 E-value=1 Score=563.41 Aligned_cols=506 Identities=22% Similarity=0.338 Sum_probs=416.8
Q ss_pred CCEECCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CEEEEEHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9200246783454300112223589878421000123543204698-----25997489999999999999997399999
Q 006530 1 MACVSLASSSSLILSSLDYHRHGFRVFTRNCVDAVATRIRISRRNH-----RFRVFCESKLEQEILDFAEGLRVIGVKPE 75 (641)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gi~~G 75 (641)
|+|.++-.+.. +....-...+..++++++.+.|+++|++..++ ..+++||+||.++++++|..|.+.|+++|
T Consensus 1 m~~~~~~~~~~---p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~g 77 (549)
T 3g7s_A 1 MSLELKYKIGF---PSLYYPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKG 77 (549)
T ss_dssp ---CCSSCCCC---CCCCCCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred CCCEEEECCCC---CCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 96124413689---877768879999999999868995599967876566666364399999999999999997297998
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 98999808970189999999964988985489999999999987128439996491459999986402646538999707
Q 006530 76 EKLSLFSDNSCRWLVADQGMLATGAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWG 155 (641)
Q Consensus 76 d~Vai~~~n~~e~iv~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (641)
|+|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++++++ .....+........ ++.++...+
T Consensus 78 d~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~-~~~~~~~~~~~~~~-~~~~~~~~~ 155 (549)
T 3g7s_A 78 EHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHS-MLYENFKPVLEKTG-VERVFVVGG 155 (549)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEG-GGHHHHHHHHTTSC-CCEEEEETC
T ss_pred CEEEEECCCCHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHCCCCEEEECH-HHHHHHHHHHHHCC-CCEEEEECC
T ss_conf 9999988997899999999998497997369889999999999862898999773-78789999986179-727999589
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCC-CCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 788888875578773228899995263110268970110013457889-8987999937999997035776289999999
Q 006530 156 KKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIG-SDDIATYVYTSGTTGNPKGVMLTHKNLLHQI 234 (641)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~i~~TSGTTG~pK~v~~sh~~~~~~~ 234 (641)
....+.++...+... ....... ++++++|+|||||||.||+|.++|+++.+.+
T Consensus 156 -------------~~~~~~~~~~~~~~~-------------~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~ 209 (549)
T 3g7s_A 156 -------------EVNSLSEVMDSGSED-------------FENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANA 209 (549)
T ss_dssp -------------SSSCHHHHHHHSCSC-------------CCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHH
T ss_pred -------------CCCCHHHHHHCCCCC-------------CCCCCCCCCCCEEEEEECCCCCCCCCEEEECHHHHHHHH
T ss_conf -------------876889997347533-------------455668997887999979886678855998589999999
Q ss_pred HHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCEEEEEC---CHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 9976546999997899978914589998858654237058752---5377999996637829971707899999999998
Q 006530 235 RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQ 311 (641)
Q Consensus 235 ~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 311 (641)
......+++.++|++++++|++|.+++...+.++..|+++++. ++..+.+.++++++|+++++|+++..+.......
T Consensus 210 ~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 289 (549)
T 3g7s_A 210 LQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESS 289 (549)
T ss_dssp HHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHH
T ss_conf 99998709998877999476799988999999986295499737899999999999857749981888999999605541
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 74122799999999998768788887673062023477896047999988999988743224678888999999886409
Q 006530 312 IFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG 391 (641)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 391 (641)
. ...+++
T Consensus 290 ~-------------------------------------------------------------------------~~~~~~ 296 (549)
T 3g7s_A 290 N-------------------------------------------------------------------------KTYDWS 296 (549)
T ss_dssp C-------------------------------------------------------------------------CCCCCT
T ss_pred C-------------------------------------------------------------------------CCCCCC
T ss_conf 2-------------------------------------------------------------------------447761
Q ss_pred CCEEEEEECCCCCHHH-HHHHHH----CC---CEEEECCCCCCCCCEEEECCCCC-CCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 8216996037899559-999998----09---90465146555567022048999-764532467689079996389986
Q 006530 392 ISKAGVSGGGSLPMHI-DLFYEA----IG---VKVQVGYGLTESSPVIAARRPTC-NVLGSVGHPINHTEIKIVDAETNE 462 (641)
Q Consensus 392 ~~r~i~~gg~~l~~~l-~~~~~~----~g---~~i~~~yG~tE~~~~~~~~~~~~-~~~~~~G~p~~~~~i~i~d~~~~~ 462 (641)
++|.+++||+++++.+ +.+.+. ++ .++++.||+||++..++...... ...+++|.|+++++++|+|++++.
T Consensus 297 ~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~ 376 (549)
T 3g7s_A 297 YLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGR 376 (549)
T ss_dssp TCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf 12588867756999999999998775537765310456851623333326884346768874656999779998389986
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCHHHHHCCC--CCC--CCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCEEEECC
Q ss_conf 578999734999247533333699111220059--899--6336853677178888974345966999621455278089
Q 006530 463 VLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD--EDG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLST 538 (641)
Q Consensus 463 ~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~--~~g--~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~ 538 (641)
+++.|+.|||+|+|+.++.||+++++.+.+.|. .+| ||+|||+|++++ ||.+++.||+||+|++ +
T Consensus 377 ~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~----------dG~l~~~GR~dd~ik~-~ 445 (549)
T 3g7s_A 377 ELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDE----------EGFLHFQDRVKEVIKY-K 445 (549)
T ss_dssp EECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECT----------TSCEEEEEEC--------
T ss_pred CCCCCCCEEEEEECCCHHHHHCCCHHHHHHHHHCCCCCCCEECCCCEEEECC----------CCEEEEECCCCCEEEE-C
T ss_conf 8999995189997866665657895563666411478982571586899838----------9639995366426998-9
Q ss_pred CEEECCHHHHHHHHCCCCCCEEEEEECCCC----CEEEEEECCHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 601216776999724945134899935998----0389995297899999987399878920027199999999999967
Q 006530 539 GENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 614 (641)
Q Consensus 539 G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 614 (641)
|++|+|.|||+.|.+||+|.+|+|++.+++ .+.++|+++++. ....+.++++++++++|+.|
T Consensus 446 G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~--------------~~~~~~~~l~~~l~~~L~~~ 511 (549)
T 3g7s_A 446 GYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEY--------------RGKVDEEDIIEWVRERISGY 511 (549)
T ss_dssp -----CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTT--------------TTSCCHHHHHHHHHTTCC--
T ss_pred CEEECHHHHHHHHHHCCCEEEEEEEEEECCCCCCEEEEEEEECCCC--------------CCCCCHHHHHHHHHHHCCCC
T ss_conf 9998899999999849993168899637566695689999978876--------------67679999999999864576
Q ss_pred HCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 22699741238980689987878003
Q 006530 615 TSKCSFQIGPIHVVDEPFTVNFLCLA 640 (641)
Q Consensus 615 ~~~~~~~~~~i~~~~~~~~~~~~~l~ 640 (641)
+ .|+.|.++++.|.+.+||+-
T Consensus 512 ~-----~P~~i~~v~~lP~t~~GKi~ 532 (549)
T 3g7s_A 512 K-----RVREVEFVEELPRTASGKLL 532 (549)
T ss_dssp --------CCCCEEEECC--------
T ss_pred C-----CCEEEEEECCCCCCCCCCEE
T ss_conf 1-----54089996437989876785
No 2
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=1.00 E-value=1 Score=563.02 Aligned_cols=497 Identities=21% Similarity=0.256 Sum_probs=412.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC---CCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 2358987842100012354320---4698259974899999999999999973999999899980897018999999996
Q 006530 21 RHGFRVFTRNCVDAVATRIRIS---RRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLA 97 (641)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~a~~---~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~n~~e~iv~~lA~~~ 97 (641)
...+..++++.+.+.|++++++ ... ..+++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||++
T Consensus 19 ~~tl~~~l~~~a~~~p~~~a~~a~~~~~-~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 97 (550)
T 3rix_A 19 DGTAGEQLHKAMKRYALVPGTIAFTDAH-IEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALF 97 (550)
T ss_dssp CSCHHHHHHHHHHHHHTSTTCEEEEETT-TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCEEEEEEECC-CCCEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 6879999999887477874489965268-896757999999999999999983999999899985885138999999997
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 49889854899999999999871284399964914599999864026465389997077888888755787732288999
Q 006530 98 TGAINVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEII 177 (641)
Q Consensus 98 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (641)
+|++++|+++.++.+++.++++.++++++++++ .....+.......+.++.++........ .....+.+++
T Consensus 98 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 168 (550)
T 3rix_A 98 IGVAVAPANDIYNERELLNSMNISQPTVVFVSK-KGLQKILNVQKKLPIIQKIIIMDSKTDY--------QGFQSMYTFV 168 (550)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHCCSEEEECG-GGHHHHHHHHHHCTTCCEEEETTCSSCB--------TTBCBHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCEEEEECH-HHHHHHHHHHHHCCCCCEEEEECCCCCC--------CCCCCHHHHH
T ss_conf 098896059768999999999852984999857-9999999998647875169997677665--------6766378876
Q ss_pred HHHHHHHCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCEEEEECC
Q ss_conf 952631102689701100134578898987999937999997035776289999999997654---69999978999789
Q 006530 178 DLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI---VPAENGDKFLSMLP 254 (641)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p 254 (641)
............ . .+.....++++++++|||||||.||+|.++|+++...+...... .++.+++++++.+|
T Consensus 169 ~~~~~~~~~~~~---~---~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 242 (550)
T 3rix_A 169 TSHLPPGFNEYD---F---VPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVP 242 (550)
T ss_dssp HHHCCTTCCTTT---C---CCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSC
T ss_pred HCCCCCCCCCCC---C---CCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECH
T ss_conf 334545665123---6---8777798788899998988666760235637999999998630201456798868999162
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEC---CHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 14589998858654237058752---537799999663782997170789999999999874122799999999998768
Q 006530 255 PWHVYERACGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISF 331 (641)
Q Consensus 255 l~~~~~~~~~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (641)
++|.+++...+.++..|+++++. ++..+++.++++++|+++++|+++..+.......
T Consensus 243 ~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------- 302 (550)
T 3rix_A 243 FHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLID-------------------- 302 (550)
T ss_dssp TTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGG--------------------
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCC--------------------
T ss_conf 999999999999998698899968989899999999749759995859999997273223--------------------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH-HHH
Q ss_conf 7888876730620234778960479999889999887432246788889999998864098216996037899559-999
Q 006530 332 AYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLF 410 (641)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gg~~l~~~l-~~~ 410 (641)
..+++++|.+++||++++..+ +.+
T Consensus 303 -------------------------------------------------------~~~l~~lr~i~~gG~~l~~~~~~~~ 327 (550)
T 3rix_A 303 -------------------------------------------------------KYDLSNLHEIASGGAPLSKEVGEAV 327 (550)
T ss_dssp -------------------------------------------------------GSCCTTCCEEEECSSCCCHHHHHHH
T ss_pred -------------------------------------------------------CCCCCCCCEEEEECCCCCHHHHHHH
T ss_conf -------------------------------------------------------3676011489994687999999999
Q ss_pred HHHCCCE-EEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCHH
Q ss_conf 9980990-465146555567022048999764532467689079996389986578999734999247533333699111
Q 006530 411 YEAIGVK-VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSA 489 (641)
Q Consensus 411 ~~~~g~~-i~~~yG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~i~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~ 489 (641)
.+.++.. +++.||+||++..+.........++++|.|+++++++|+|++++.+++.|+.|||+++|++++.||+++++.
T Consensus 328 ~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~ 407 (550)
T 3rix_A 328 AKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEA 407 (550)
T ss_dssp HHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCHHHCCCHHH
T ss_conf 99759984510657575642043578778889985101698089998488984999899769999378715121289556
Q ss_pred HHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCEEEECCCEEECCHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 22005989963368536771788889743459669996214552780896012167769997249451348999359980
Q 006530 490 TKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 569 (641)
Q Consensus 490 ~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~~ 569 (641)
|.+.|+.+|||+|||+|++++ +|.+++.||+||+|++ +|++|+|.+||+.|.+||+|.+|+|++.+++.
T Consensus 408 t~~~~~~~g~~~TGDl~~~~~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~ 476 (550)
T 3rix_A 408 TNALIDKDGWLHSGDIAYWDE----------DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDD 476 (550)
T ss_dssp HHHHBCTTSCEEEEEEEEECT----------TCCEEEC------------------------------------------
T ss_pred HHHHCCCCCCEECCCEEEEEC----------CCEEEEEECCHHEEEE-CCEEECHHHHHHHHHHCCCCCEEEEEEEECCC
T ss_conf 653007998735375799908----------9239997150040377-99998899999999869996558999753677
Q ss_pred ----EEEEEECCHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCC-CEEEECCCCCCCCCCCC
Q ss_conf ----389995297899999987399878920027199999999999967226997412-38980689987878003
Q 006530 570 ----PGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIG-PIHVVDEPFTVNFLCLA 640 (641)
Q Consensus 570 ----~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~-~i~~~~~~~~~~~~~l~ 640 (641)
+.++|++..+ ...+.++++++++++++.++ ++. .|.++++.|.+.+||+-
T Consensus 477 ~g~~~~a~vv~~~~----------------~~~~~~~l~~~~~~~l~~~~-----~~~~~i~~v~~lP~t~~GKi~ 531 (550)
T 3rix_A 477 AGELPAAVVVLEHG----------------KTMTEKEIVDYVASQVTTAK-----KLRGGVVFVDEVPKGLTGKLD 531 (550)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CCCEEEEEEEECCC----------------CCCCHHHHHHHHHHHCCCCC-----CCCCCEEEEEECCCCCCCCEE
T ss_conf 89568999994699----------------98899999999987565331-----067756998603789986024
No 3
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=1.00 E-value=1 Score=562.63 Aligned_cols=492 Identities=24% Similarity=0.357 Sum_probs=401.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEE
Q ss_conf 58987842100012354320469825997489999999999999997399999989998089701899999999649889
Q 006530 23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN 102 (641)
Q Consensus 23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~n~~e~iv~~lA~~~~G~~~ 102 (641)
.+..++++++.+.|+++|+++.... +++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 62 tl~~~l~~~a~~~pd~~Al~~~~~~-~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~ 140 (979)
T 3tsy_A 62 SLHDYIFQNISEFATKPCLINGPTG-HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATA 140 (979)
T ss_dssp CHHHHHTTTGGGTTTSEEEEETTTC-CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEE
T ss_pred CHHHHHHHHHHHCCCCEEEEECCCC-CEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEE
T ss_conf 7999999999868997099988999-687899999999999999997097986999999189899999999999729889
Q ss_pred EECCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 85489999999999987128439996491459999986402646538999707788888875578773228899995263
Q 006530 103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRE 182 (641)
Q Consensus 103 v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (641)
+|+++.++.+++.+++++++++++|+++ .....+....... .. .++...+.... .. ..+...|.++......
T Consensus 141 vpl~~~~~~~~l~~~l~~~~~~~vi~~~-~~~~~~~~~~~~~-~~-~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~ 212 (979)
T 3tsy_A 141 TAANPFFTPAEIAKQAKASNTKLIITEA-RYVDKIKPLQNDD-GV-VIVCIDDNESV-PI----PEGCLRFTELTQSTTE 212 (979)
T ss_dssp EEECTTSCHHHHHHHHHHHTEEEEEECS-TTTTTSHHHHHTS-CC-EEEECCCCTTS-CC----CTTEEEGGGTSSCCSG
T ss_pred EEECCCCCHHHHHHHHHHCCCEEEEECH-HHHHHHHHHHHCC-CC-EEEEECCCCCC-CC----CCCCCCHHHHHHCCCC
T ss_conf 8628878999999999972980999885-8899999975247-84-69996785455-67----7665349998612333
Q ss_pred HHCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH----HCCCCCCCEEEEECCHHHH
Q ss_conf 110268970110013457889898799993799999703577628999999999765----4699999789997891458
Q 006530 183 SRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD----IVPAENGDKFLSMLPPWHV 258 (641)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~----~~~~~~~d~~l~~~pl~~~ 258 (641)
... ........++++++|+|||||||.||+|.++|+++.+.+..... .+.+.++|++++.+|++|.
T Consensus 213 ~~~----------~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~ 282 (979)
T 3tsy_A 213 ASE----------VIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHI 282 (979)
T ss_dssp GGG----------GSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSH
T ss_pred CCC----------CCCCCCCCCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHH
T ss_conf 355----------6776778966659999478988897399966699999999998740534467999779997856999
Q ss_pred HHHHH-HHHHHHCCEEEEEC---CHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99988-58654237058752---537799999663782997170789999999999874122799999999998768788
Q 006530 259 YERAC-GYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYT 334 (641)
Q Consensus 259 ~~~~~-~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (641)
+++.. .+.++..|+++++. ++..+++.++++++|++..+|+++..+.+.....
T Consensus 283 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------- 339 (979)
T 3tsy_A 283 YALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETE----------------------- 339 (979)
T ss_dssp HHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGG-----------------------
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCEEEECHHHHHHHHHHCCCCC-----------------------
T ss_conf 999999998875384899908899999999999859729974799999998576555-----------------------
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH-HHHH
Q ss_conf 887673062023477896047999988999988743224678888999999886409821699603789955999-9998
Q 006530 335 AFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEA 413 (641)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gg~~l~~~l~~-~~~~ 413 (641)
..+++++|.+++||+++++.+.+ +.+.
T Consensus 340 ----------------------------------------------------~~~l~~lr~~~~gg~~l~~~~~~~~~~~ 367 (979)
T 3tsy_A 340 ----------------------------------------------------KYDLSSIRVVKSGAAPLGKELEDAVNAK 367 (979)
T ss_dssp ----------------------------------------------------TSCCTTCCEEEESSCCCCSSHHHHHHHH
T ss_pred ----------------------------------------------------CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf ----------------------------------------------------7884202899996787999999999997
Q ss_pred C-CCEEEECCCCCCCCCEEEECC-----CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 0-990465146555567022048-----9997645324676890799963899865789997349992475333336991
Q 006530 414 I-GVKVQVGYGLTESSPVIAARR-----PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNP 487 (641)
Q Consensus 414 ~-g~~i~~~yG~tE~~~~~~~~~-----~~~~~~~~~G~p~~~~~i~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~ 487 (641)
+ +.++++.||+||++..+..+. +.....+++|.|+++++++|+|++++++++.|+.|||+|+|+.++.||+++|
T Consensus 368 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p 447 (979)
T 3tsy_A 368 FPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNP 447 (979)
T ss_dssp CTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCH
T ss_pred CCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCH
T ss_conf 79984885444545327877077878876666778767315776799984888888899986279997887034116993
Q ss_pred HHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCEEEECCCEEECCHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf 11220059899633685367717888897434596699962145527808960121677699972494513489993599
Q 006530 488 SATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ 567 (641)
Q Consensus 488 ~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~ 567 (641)
+.|.+.|+.++||+|||+|++++ +|.++++||+||+||+ +|++|+|.|||+.|.+||+|.+++|++.++
T Consensus 448 ~~t~~~f~~~g~~~TGDl~~~~~----------dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~ 516 (979)
T 3tsy_A 448 AATAETIDKDGWLHTGDIGLIDD----------DDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKE 516 (979)
T ss_dssp HHHHHHBCTTSCEEEEEEEEECT----------TSCEEEEEESCC-----------------------------------
T ss_pred HHHHHHCCCCCCEECCCEEEECC----------CCEEEEECCCCCEEEE-CCEEECHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 56064336898287688899857----------9659993588787999-999997999999998499852699997426
Q ss_pred C----CEEEEEECCHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 8----038999529789999998739987892002719999999999996722699741238980689987878003
Q 006530 568 R----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 640 (641)
Q Consensus 568 ~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 640 (641)
+ .+.++|+++++ ...+.++++++++++|+.|+ +|++|+++++.|.+.+||+-
T Consensus 517 ~~~g~~~~a~vv~~~~----------------~~~~~~~l~~~l~~~l~~~~-----~p~~i~~v~~lP~t~~GKi~ 572 (979)
T 3tsy_A 517 EAAGEVPVAFVVKSKD----------------SELSEDDVKQFVSKQVVFYK-----RINKVFFTESIPKAPSGKIL 572 (979)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CCCCCEEEEEEEECCC----------------CCCCHHHHHHHHHHHCCCCC-----CCEEEEEECCCCCCCCCCEE
T ss_conf 6789379999997799----------------98899999999997554666-----87079996976749997863
No 4
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=1.00 E-value=1 Score=560.56 Aligned_cols=484 Identities=24% Similarity=0.385 Sum_probs=402.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEE
Q ss_conf 58987842100012354320469825997489999999999999997399999989998089701899999999649889
Q 006530 23 GFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN 102 (641)
Q Consensus 23 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~n~~e~iv~~lA~~~~G~~~ 102 (641)
.+..++++++.+.|+++|+++.++. +++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 23 ~l~~~l~~~a~~~p~~~a~~~~~~~-~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~ 101 (536)
T 3ni2_A 23 PLHSYVLENLSNHSSKPCLINGANG-DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAII 101 (536)
T ss_dssp CHHHHHTTTGGGSTTSEEEEETTTC-CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEE
T ss_pred CHHHHHHHHHHCCCCCEEEEECCCC-CEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCEE
T ss_conf 5999999876538996499977999-788899999999999999998199998999998589689999999999829799
Q ss_pred EECCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 85489999999999987128439996491459999986402646538999707788888875578773228899995263
Q 006530 103 VVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRE 182 (641)
Q Consensus 103 v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (641)
+|+++.++.+++.++++.+++++++++. .....+.+..... .++ ++...... .....++++......
T Consensus 102 vpl~~~~~~~~l~~~l~~~~~~~~i~~~-~~~~~~~~~~~~~-~~~-~~~~~~~~----------~~~~~~~~~~~~~~~ 168 (536)
T 3ni2_A 102 TAANPFSTPAELAKHAKASRAKLLITQA-CYYEKVKDFARES-DVK-VMCVDSAP----------DGCLHFSELTQADEN 168 (536)
T ss_dssp EECCTTCCHHHHHHHHHHHTEEEEEECG-GGTHHHHHHHHHH-TCE-EEESSCCC----------TTCEETHHHHTSCGG
T ss_pred ECCCCCCCHHHHHHHHHHCCCEEEEECH-HHHHHHHHHHHHC-CCE-EEEECCCC----------CCCCCHHHHHHCCCC
T ss_conf 6358778999999999963987999885-7899999998605-861-99956787----------776589998615655
Q ss_pred HHCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH----HCCCCCCCEEEEECCHHHH
Q ss_conf 110268970110013457889898799993799999703577628999999999765----4699999789997891458
Q 006530 183 SRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD----IVPAENGDKFLSMLPPWHV 258 (641)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~----~~~~~~~d~~l~~~pl~~~ 258 (641)
. .+.....++++++++|||||||.||+|.++|+++.+.+..... .+.+.++|++++.+|++|.
T Consensus 169 ~-------------~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~ 235 (536)
T 3ni2_A 169 E-------------APQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHI 235 (536)
T ss_dssp G-------------CCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSH
T ss_pred C-------------CCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHH
T ss_conf 5-------------665789805789998589855663587730999999999997412644467888779995572888
Q ss_pred HHHHH-HHHHHHCCEEEEEC---CHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99988-58654237058752---537799999663782997170789999999999874122799999999998768788
Q 006530 259 YERAC-GYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYT 334 (641)
Q Consensus 259 ~~~~~-~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (641)
+++.. .+.++..|+++++. ++..+++.++++++|++.++|+++..+.+.....
T Consensus 236 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------- 292 (536)
T 3ni2_A 236 YALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLD----------------------- 292 (536)
T ss_dssp HHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGG-----------------------
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCC-----------------------
T ss_conf 877999999996598799907999999999999849748970489999997080003-----------------------
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH-HHHHHH
Q ss_conf 8876730620234778960479999889999887432246788889999998864098216996037899559-999998
Q 006530 335 AFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEA 413 (641)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gg~~l~~~l-~~~~~~ 413 (641)
...++++|.+++||++++..+ +.+.+.
T Consensus 293 ----------------------------------------------------~~~l~~lr~i~~gGe~l~~~~~~~~~~~ 320 (536)
T 3ni2_A 293 ----------------------------------------------------KHDLSSLRMIKSGGAPLGKELEDTVRAK 320 (536)
T ss_dssp ----------------------------------------------------GSCCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred ----------------------------------------------------CCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf ----------------------------------------------------5887400099987777999999999997
Q ss_pred C-CCEEEECCCCCCCCCEEEECC-----CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 0-990465146555567022048-----9997645324676890799963899865789997349992475333336991
Q 006530 414 I-GVKVQVGYGLTESSPVIAARR-----PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNP 487 (641)
Q Consensus 414 ~-g~~i~~~yG~tE~~~~~~~~~-----~~~~~~~~~G~p~~~~~i~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~ 487 (641)
+ +.++++.||+||++...+.+. .....++++|.|+++++++|+|++++.+++.|+.|||+++|+.++.||++++
T Consensus 321 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p 400 (536)
T 3ni2_A 321 FPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDP 400 (536)
T ss_dssp CTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCH
T ss_pred CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHCCCH
T ss_conf 79997321006541163432454668864458899756767983899993899967989996289996836213544895
Q ss_pred HHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCEEEECCCEEECCHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf 11220059899633685367717888897434596699962145527808960121677699972494513489993599
Q 006530 488 SATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ 567 (641)
Q Consensus 488 ~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~ 567 (641)
+.|.+.|+.++||+|||+|++++ ||.+++.||+||+|++ +|++|+|.+||+.|.+||+|.+|+|++.++
T Consensus 401 ~~t~~~~~~~g~~~TGDl~~~~~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~ 469 (536)
T 3ni2_A 401 EATSRTIDKEGWLHTGDIGYIDD----------DDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKD 469 (536)
T ss_dssp HHHHHHBCTTSCEEEEEEEEECT----------TSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEE
T ss_pred HHHHHHCCCCCCEECCCEEEECC----------CCEEEEEECCCCEEEE-CCEEECHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf 67774336798547165799818----------9659998503034888-999998899999997398710478996225
Q ss_pred C----CEEEEEECCHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 8----038999529789999998739987892002719999999999996722699741238980689987878003
Q 006530 568 R----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 640 (641)
Q Consensus 568 ~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 640 (641)
+ .+.++|++.++ ...+.++++++++++|+.|+ +|++|+++++.|.+.+||+-
T Consensus 470 ~~~g~~~~a~vv~~~~----------------~~~~~~~l~~~l~~~l~~~~-----~p~~i~~v~~lP~t~~GKi~ 525 (536)
T 3ni2_A 470 EDAGEVPVAFVVKSEK----------------SQATEDEIKQYISKQVIFYK-----RIKRVFFIEAIPKAPSGKIL 525 (536)
T ss_dssp TTTEEEEEEEEEECTT----------------CCCCHHHHHHHHHTTSCGGG-----CCSEEEECSCCCBCTTSCBC
T ss_pred CCCCCEEEEEEEECCC----------------CCCCHHHHHHHHHHHCCCCC-----CCCEEEEEECCCCCCCCCEE
T ss_conf 7789515899996689----------------98999999999997555772-----46679997147889987760
No 5
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=1.00 E-value=1 Score=554.60 Aligned_cols=483 Identities=23% Similarity=0.332 Sum_probs=397.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCE
Q ss_conf 5898784210001235432046-982599748999999999999999739999998999808970189999999964988
Q 006530 23 GFRVFTRNCVDAVATRIRISRR-NHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAI 101 (641)
Q Consensus 23 ~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~Ty~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~n~~e~iv~~lA~~~~G~~ 101 (641)
.+..+.++++.+.|+++|+... ++..+++||+||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus 19 ~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav 98 (541)
T 1v25_A 19 NLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAV 98 (541)
T ss_dssp CTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHCCCCEEEEEECCCCCCEECHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCE
T ss_conf 89999999998689954999833898843119999999999999999809999998999947867899999999866908
Q ss_pred EEECCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 98548999999999998712843999649145999998640264653899970778888887557877322889999526
Q 006530 102 NVVRGSRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGR 181 (641)
Q Consensus 102 ~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (641)
++|+++.++.+++.++++.++++++++++ .....+.......+.++.++...+... .....|++++....
T Consensus 99 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 168 (541)
T 1v25_A 99 LHTANPRLSPKEIAYILNHAEDKVLLFDP-NLLPLVEAIRGELKTVQHFVVMDEKAP---------EGYLAYEEALGEEA 168 (541)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEECG-GGHHHHHHHGGGCSSCCEEEESSSCCC---------TTCEEHHHHCCSCC
T ss_pred EEECCCCCCHHHHHHHHHHCCCCEEEECH-HHHHHHHHHHHHCCCCCEEEEECCCCC---------CCCCCHHHHHHCCC
T ss_conf 98438666989999999707996999883-588999998742897528999568887---------34006898851468
Q ss_pred HHHCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH--HHHCCCCCCCEEEEECCHHHHH
Q ss_conf 31102689701100134578898987999937999997035776289999999997--6546999997899978914589
Q 006530 182 ESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL--YDIVPAENGDKFLSMLPPWHVY 259 (641)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~~~~~~~~~--~~~~~~~~~d~~l~~~pl~~~~ 259 (641)
......++++++++|||||||.||+|.+||+++....... ...+++.++|++++.+|++|.+
T Consensus 169 ----------------~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~ 232 (541)
T 1v25_A 169 ----------------DPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVN 232 (541)
T ss_dssp ----------------CCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHH
T ss_pred ----------------CCCCCCCCCCEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHH
T ss_conf ----------------7556898873799988777877867654549899987665422234688887799936633546
Q ss_pred HHHHHHHHHHCCEEEEEC----CHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 998858654237058752----5377999996637829971707899999999998741227999999999987687888
Q 006530 260 ERACGYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTA 335 (641)
Q Consensus 260 ~~~~~~~~l~~G~~~v~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (641)
++...+.++..|+++++. ++..+++.++++++|+++++|+++..+.+.....
T Consensus 233 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------ 288 (541)
T 1v25_A 233 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST------------------------ 288 (541)
T ss_dssp HHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHCC------------------------
T ss_conf 88888888860755996278899899999988647469864659999999504205------------------------
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 87673062023477896047999988999988743224678888999999886409821699603789955999999809
Q 006530 336 FKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIG 415 (641)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gg~~l~~~l~~~~~~~g 415 (641)
..+++++|.+++||++++..+.+.++.++
T Consensus 289 ---------------------------------------------------~~~l~~lr~i~~gG~~l~~~~~~~~~~~g 317 (541)
T 1v25_A 289 ---------------------------------------------------GHRLKTLRRLVVGGSAAPRSLIARFERMG 317 (541)
T ss_dssp ---------------------------------------------------TCCCSSCCEEEECSSCCCHHHHHHHHHTT
T ss_pred ---------------------------------------------------CCCCHHCCEEEECCCCCCHHHHHHHHHHC
T ss_conf ---------------------------------------------------87621051899878889999999999719
Q ss_pred CEEEECCCCCCCCCEEEECCCCC-----------CCCCCCCCCCCCCEEEEEECCCCCCCCC--CCCCEEEEECCCCCCC
Q ss_conf 90465146555567022048999-----------7645324676890799963899865789--9973499924753333
Q 006530 416 VKVQVGYGLTESSPVIAARRPTC-----------NVLGSVGHPINHTEIKIVDAETNEVLPA--GSKGIVKVRGSQVMQG 482 (641)
Q Consensus 416 ~~i~~~yG~tE~~~~~~~~~~~~-----------~~~~~~G~p~~~~~i~i~d~~~~~~~~~--g~~Gel~v~g~~~~~g 482 (641)
.++++.||+||++..++.+.... ...+++|.|+++++++|+|+ ++++++. ++.|||+++||.++.|
T Consensus 318 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~g~~~~~~~~~~GEl~v~g~~v~~G 396 (541)
T 1v25_A 318 VEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADE-EGRPVPKDGKALGEVQLKGPWITGG 396 (541)
T ss_dssp CEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECT-TSCBCCSSSCCCEEEEEESTTSBSS
T ss_pred CCEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC-CCCCCCCCCCCCEEEEEECCCHHCC
T ss_conf 955402552112641002565554334674334554577887689807999889-9998878998624999707651014
Q ss_pred CCCCCHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCEEEECCCEEECCHHHHHHHHCCCCCCEEEE
Q ss_conf 36991112200598996336853677178888974345966999621455278089601216776999724945134899
Q 006530 483 YFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV 562 (641)
Q Consensus 483 Y~~~~~~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v 562 (641)
|+++++.|.+.|..+|||+|||+|++++ +|.+++.||+||+|+. +|++|+|.+||+.|.+||+|.+|+|
T Consensus 397 Y~~~p~~t~~~f~~~g~~~TGDlg~~d~----------dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V 465 (541)
T 1v25_A 397 YYGNEEATRSALTPDGFFRTGDIAVWDE----------EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAV 465 (541)
T ss_dssp CBTCHHHHHTTBCTTSCEEEEEEEEECT----------TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CE
T ss_pred CCCCHHHHHHHCCCCCCEECCCEEEECC----------CCEEEEEECCCCEEEE-CCEEECHHHHHHHHHHCCCCEEEEE
T ss_conf 1588231133256888757688799868----------9449994043012666-9899989999999973978107899
Q ss_pred EECCCC----CEEEEEECCHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHH-HHHHHHCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 935998----03899952978999999873998789200271999999999-9996722699741238980689987878
Q 006530 563 IGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFL 637 (641)
Q Consensus 563 ~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~i~~~~~~~~~~~~ 637 (641)
++.+++ .+.++|+++ + ...+.+++++++++ +|+.|+ .|+.|+++++.|.+.+|
T Consensus 466 v~~~~~~~~~~~~a~vv~~-~----------------~~~~~~~l~~~~~~~~L~~~~-----~P~~i~~v~~lP~t~~G 523 (541)
T 1v25_A 466 VAIPHPKWQERPLAVVVPR-G----------------EKPTPEELNEHLLKAGFAKWQ-----LPDAYVFAEEIPRTSAG 523 (541)
T ss_dssp EEEECSSSSEEEEECC------------------------------------CCCTTT-----SCSBC------------
T ss_pred EEECCCCCCCEEEEEEEEC-C----------------CCCCHHHHHHHHHHCCCCCCC-----CCCEEEEECCCCCCCCC
T ss_conf 9833787672479999978-9----------------898999999999854686455-----78579993777888765
Q ss_pred CCC
Q ss_conf 003
Q 006530 638 CLA 640 (641)
Q Consensus 638 ~l~ 640 (641)
|+-
T Consensus 524 Ki~ 526 (541)
T 1v25_A 524 KFL 526 (541)
T ss_dssp --C
T ss_pred CEE
T ss_conf 760
No 6
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=1.00 E-value=1 Score=553.23 Aligned_cols=491 Identities=18% Similarity=0.174 Sum_probs=404.3
Q ss_pred HHHHHHHHHHHHHHHHHCC--CCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEE
Q ss_conf 9878421000123543204--69825997489999999999999997399999989998089701899999999649889
Q 006530 25 RVFTRNCVDAVATRIRISR--RNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAIN 102 (641)
Q Consensus 25 ~~~~~~~~~~~~~~~a~~~--~~~~~~~~Ty~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~n~~e~iv~~lA~~~~G~~~ 102 (641)
..++++++...|+++|++. ++++.+++||+||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 59 ~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~Gav~ 138 (580)
T 3etc_A 59 YDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIA 138 (580)
T ss_dssp HHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCEEE
T ss_conf 99999998648998799998689977487699999999999999997598999999998389789999999998599899
Q ss_pred EECCCCCCHHHHHHHHHHCCCEEEEECCHHH-HHHHHHHHCCCCCC-CEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 8548999999999998712843999649145-99999864026465-389997077888888755787732288999952
Q 006530 103 VVRGSRSSSEELLHIYNHSESVALAVENPEF-FNRIAETLCSKAAM-RFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLG 180 (641)
Q Consensus 103 v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (641)
+|+++.++.+++.++++.+++++++++.... ...+.+.....+.+ ...+.+.+... .+...+.+.+...
T Consensus 139 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 209 (580)
T 3etc_A 139 VPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVL---------EGWIDFRKELEES 209 (580)
T ss_dssp EECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCC---------TTCEEHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCC---------CCCCCHHHHHHHC
T ss_conf 7078658989999999836987899715245788888776308875427999688566---------5401489887437
Q ss_pred HHHHCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHH
Q ss_conf 63110268970110013457889898799993799999703577628999999999765469999978999789145899
Q 006530 181 RESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYE 260 (641)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~ 260 (641)
....... .......++++++++|||||||.||+|.++|.++...+........+.+++++++..|++|..+
T Consensus 210 ~~~~~~~---------~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (580)
T 3etc_A 210 SPIFERP---------TGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKC 280 (580)
T ss_dssp CSCCCCC---------CGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHH
T ss_pred CCCCCCC---------CCCCCCCCCCCEEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHH
T ss_conf 8322467---------5556778787489999379878755799616999999999898647898856999287489999
Q ss_pred HHH-HHHHHHCCEEEEEC-----CHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 988-58654237058752-----537799999663782997170789999999999874122799999999998768788
Q 006530 261 RAC-GYFIFSRGIELMYT-----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYT 334 (641)
Q Consensus 261 ~~~-~~~~l~~G~~~v~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (641)
.+. .+.++..|+++++. ++..+++.++++++|+++++|+++..+.+...
T Consensus 281 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~------------------------- 335 (580)
T 3etc_A 281 VWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDL------------------------- 335 (580)
T ss_dssp HHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC-------------------------
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHHCCC-------------------------
T ss_conf 9999999984884899966777899999999999799199864999999984401-------------------------
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH-HHHHHH
Q ss_conf 8876730620234778960479999889999887432246788889999998864098216996037899559-999998
Q 006530 335 AFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEA 413 (641)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gg~~l~~~l-~~~~~~ 413 (641)
...+++++|.+++||+++++++ +++.+.
T Consensus 336 ---------------------------------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~ 364 (580)
T 3etc_A 336 ---------------------------------------------------SHYNFSTLKYAVVAGEPLNPEVFNRFLEF 364 (580)
T ss_dssp ------------------------------------------------------CCTTCCEEEECSSCCCHHHHHHHHHH
T ss_pred ---------------------------------------------------CCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf ---------------------------------------------------24897554699991688999999999997
Q ss_pred CCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEC-----CCCCCCCCCCCH
Q ss_conf 099046514655556702204899976453246768907999638998657899973499924-----753333369911
Q 006530 414 IGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG-----SQVMQGYFKNPS 488 (641)
Q Consensus 414 ~g~~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~i~i~d~~~~~~~~~g~~Gel~v~g-----~~~~~gY~~~~~ 488 (641)
+|.++++.||+||++..+...+.....++++|.|+++++++|+|+ ++++++.|+.|||++++ +.++.||+++++
T Consensus 365 ~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~-~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~ 443 (580)
T 3etc_A 365 TGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDR-DGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPE 443 (580)
T ss_dssp HSCCCEEEECCTTSSCCEECCTTSCCCTTCCBEECTTCEEEEECT-TSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHH
T ss_pred HCCEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECC-CCCCCCCCCCEEEEEECCCCCCCEEECCCCCCHH
T ss_conf 399286363615025100558887899886535789988999889-9899989986289996479998732241157976
Q ss_pred HHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCEEEECCCEEECCHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf 12200598996336853677178888974345966999621455278089601216776999724945134899935998
Q 006530 489 ATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR 568 (641)
Q Consensus 489 ~~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~ 568 (641)
.|.+.| .+|||+|||+|++++ ||.++++||+||+|++ +|++|+|.+||+.|.+||+|.+|+|+|.+++
T Consensus 444 ~t~~~f-~~gwy~TGDlg~~d~----------dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~ 511 (580)
T 3etc_A 444 RTEETW-HDGYYHTGDMAWMDE----------DGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDP 511 (580)
T ss_dssp HHHHHE-ETTEEEEEEEEEECT----------TSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEET
T ss_pred HHHHHC-CCCEEECCCEEEECC----------CCCEEEEECCCCEEEE-CCEEECHHHHHHHHHHCCCEEEEEEEEEECC
T ss_conf 777504-798896374899979----------9709998268998987-9999989999999975988416999962356
Q ss_pred ----CEEEEEECCHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf ----038999529789999998739987892002719999999999996722699741238980689987878003
Q 006530 569 ----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 640 (641)
Q Consensus 569 ----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 640 (641)
.+.++|+++++. ...+...++++++++++|+.|+ .|+.|.++++.|.+.+||+-
T Consensus 512 ~~g~~~~a~vv~~~~~-------------~~~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~lP~t~sGKi~ 569 (580)
T 3etc_A 512 VRGQVIKATIVLTKDY-------------TPSDSLKNELQDHVKNVTAPYK-----YPRIIEFVPELPKTISGKIR 569 (580)
T ss_dssp TTEEEEEEEEEECTTC-------------CCCHHHHHHHHHHHHHHSCGGG-----CCSEEEEECC----------
T ss_pred CCCCEEEEEEEECCCC-------------CCCHHHHHHHHHHHHHHCCCCC-----CCEEEEEECCCCCCCCCCCC
T ss_conf 7783779999988999-------------9888999999999986588765-----87489991888989986884
No 7
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=1.00 E-value=1 Score=553.16 Aligned_cols=488 Identities=21% Similarity=0.299 Sum_probs=398.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf 78421000123543204698259974899999999999999973999999899980897018999999996498898548
Q 006530 27 FTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRG 106 (641)
Q Consensus 27 ~~~~~~~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~n~~e~iv~~lA~~~~G~~~v~i~ 106 (641)
++.+.+.+. +++|+++.++ .+++||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|++
T Consensus 31 ~l~~~~~~~-~~~A~~~~~~-~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~ 108 (548)
T 2d1s_A 31 KYMERYAKL-GAIAFTNAVT-GVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTN 108 (548)
T ss_dssp HHHHHHHHH-TCEEEEETTT-CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHCCC-CCCEEEECCC-CCEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCEEECCC
T ss_conf 987530346-7744787477-98854999999999999999970999899899992784469999999996098883258
Q ss_pred CCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 99999999999871284399964914599999864026465389997077888888755787732288999952631102
Q 006530 107 SRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKA 186 (641)
Q Consensus 107 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (641)
+.++.+++.+++++++++++++++ .....+.......+....++.+.+... ......|+++...+.....+
T Consensus 109 ~~~~~~~l~~~l~~~~~~~vi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 179 (548)
T 2d1s_A 109 EIYTLRELVHSLGISKPTIVFSSK-KGLDKVITVQKTVTTIKTIVILDSKVD--------YRGYQCLDTFIKRNTPPGFQ 179 (548)
T ss_dssp TTSCHHHHHHHHHHHCCSEEEECT-TTHHHHHHHHHHSTTCCEEEETTCSSC--------BTTBCBHHHHHHHTSCTTCC
T ss_pred CCCCHHHHHHHHHHCCCEEEEECH-HHHHHHHHHHCCCCCCCEEEEECCCCC--------CCCCCCHHHHHHCCCCCCCC
T ss_conf 887999999999862984999857-999999998417888887999688653--------34546289997457655677
Q ss_pred CCCCCHHHCCCCCCCC-CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCEEEEECCHHHHHHHH
Q ss_conf 6897011001345788-98987999937999997035776289999999997654---6999997899978914589998
Q 006530 187 FSDSNDARKHYKYETI-GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI---VPAENGDKFLSMLPPWHVYERA 262 (641)
Q Consensus 187 ~~~~~~~~~~~~~~~~-~~~~~a~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~pl~~~~~~~ 262 (641)
. . ....... .++++++++|||||||.||+|.+||+++.+.+...... +++.++|++++.+|++|.+++.
T Consensus 180 ~-----~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~ 252 (548)
T 2d1s_A 180 A-----S--SFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMF 252 (548)
T ss_dssp G-----G--GCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHH
T ss_pred C-----C--CCCCCCCCCCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHHHHCHHHCCCCCCCCEEEEECCHHHHHHHH
T ss_conf 5-----5--55544568878789999689888998778862799999999741401014789665699816289899999
Q ss_pred HH-HHHHHCCEEEEEC---CHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 85-8654237058752---5377999996637829971707899999999998741227999999999987687888876
Q 006530 263 CG-YFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKR 338 (641)
Q Consensus 263 ~~-~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (641)
.. +.++ .|+++++. ++..+++.++++++|+++++|+++..+.+.....
T Consensus 253 ~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------- 304 (548)
T 2d1s_A 253 TTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLN--------------------------- 304 (548)
T ss_dssp HHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGG---------------------------
T ss_pred HHHHHHH-CCCEEEECCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCC---------------------------
T ss_conf 9999974-586799757899999999999709939995689999987174434---------------------------
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH-HHHHHHC-CC
Q ss_conf 730620234778960479999889999887432246788889999998864098216996037899559-9999980-99
Q 006530 339 IYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GV 416 (641)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gg~~l~~~l-~~~~~~~-g~ 416 (641)
...++++|.+++||++++..+ +.+.+.+ +.
T Consensus 305 ------------------------------------------------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~ 336 (548)
T 2d1s_A 305 ------------------------------------------------KYDLSNLVEIASGGAPLSKEVGEAVARRFNLP 336 (548)
T ss_dssp ------------------------------------------------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCS
T ss_pred ------------------------------------------------CCCCCCEEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf ------------------------------------------------46621006999868649999999999874998
Q ss_pred EEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHCCCC
Q ss_conf 04651465555670220489997645324676890799963899865789997349992475333336991112200598
Q 006530 417 KVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE 496 (641)
Q Consensus 417 ~i~~~yG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~i~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~ 496 (641)
.+++.||+||++..+..........+++|.|+++++++|+|++++++++.|+.|||+++|++++.||+++++.|.+.|+.
T Consensus 337 ~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~ 416 (548)
T 2d1s_A 337 GVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDE 416 (548)
T ss_dssp CCEEEEECGGGSSEEEECCTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCT
T ss_pred CEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCHHHHHHHCCCHHHHHHCCCC
T ss_conf 54414656654636550576667778888557776489996776761799997199988877860416996785301168
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCEEEECCCEEECCHHHHHHHHCCCCCCEEEEEECCCC----CEEE
Q ss_conf 996336853677178888974345966999621455278089601216776999724945134899935998----0389
Q 006530 497 DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGA 572 (641)
Q Consensus 497 ~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a 572 (641)
++||+|||+|++++ +|.+++.||+||+|++ +|++|+|.+||+.|.+||+|.+|+|++.+++ .+.+
T Consensus 417 ~g~~~TGDl~~~~~----------dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a 485 (548)
T 2d1s_A 417 EGWLHTGDIGYYDE----------EKHFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGA 485 (548)
T ss_dssp TSCEEEEEEEEECT----------TCCEEEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEE
T ss_pred CCEEECCCEEEECC----------CCEEEEECCCCCEEEE-CCEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEE
T ss_conf 95798667799928----------9849995546231897-779997999999997299944799997775777803689
Q ss_pred EEECCHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCC-CEEEECCCCCCCCCCCC
Q ss_conf 995297899999987399878920027199999999999967226997412-38980689987878003
Q 006530 573 IIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIG-PIHVVDEPFTVNFLCLA 640 (641)
Q Consensus 573 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~-~i~~~~~~~~~~~~~l~ 640 (641)
+|+++++ ...+.++++++++++|+.|+ +|+ +|.++++.|.+.+||+-
T Consensus 486 ~vv~~~~----------------~~~~~~~l~~~~~~~l~~~~-----~p~~~i~~v~~lP~t~~GKi~ 533 (548)
T 2d1s_A 486 VVVLESG----------------KNMTEKEVMDYVASQVSNAK-----RLRGGVRFVDEVPKGLTGKID 533 (548)
T ss_dssp EEEECTT----------------CCCCHHHHHHHHHTTSCGGG-----SCTTCEEECSSCCBCTTSCBC
T ss_pred EEEECCC----------------CCCCHHHHHHHHHHHCCCCC-----CCCCCEEECCCCCCCCCCHHH
T ss_conf 9998488----------------77799999999998543433-----456647981478989721667
No 8
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=1.00 E-value=1 Score=553.07 Aligned_cols=499 Identities=16% Similarity=0.158 Sum_probs=401.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCC---CCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 5898784210001235432046---9825997489999999999999997399999989998089701899999999649
Q 006530 23 GFRVFTRNCVDAVATRIRISRR---NHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATG 99 (641)
Q Consensus 23 ~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~Ty~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~n~~e~iv~~lA~~~~G 99 (641)
.+.+.+++++...|+++|+++. ++..+++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|
T Consensus 77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 156 (652)
T 1pg4_A 77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 156 (652)
T ss_dssp HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCC
T ss_conf 99999998754579966999973799962697399999999999999998499999989999179999999999999859
Q ss_pred CEEEECCCCCCHHHHHHHHHHCCCEEEEECCHHH--------HHHHHHHHCCCC--CCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 8898548999999999998712843999649145--------999998640264--653899970778888887557877
Q 006530 100 AINVVRGSRSSSEELLHIYNHSESVALAVENPEF--------FNRIAETLCSKA--AMRFIILLWGKKSSVAPDIVEEIP 169 (641)
Q Consensus 100 ~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 169 (641)
++++++++.++.+++.+++++++++++|+++... ...+.+.....+ .++.++.+......... ....
T Consensus 157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~---~~~~ 233 (652)
T 1pg4_A 157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW---QEGR 233 (652)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC---CBTT
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC---CCCC
T ss_conf 5898168988989999999845998999767422388634539999999841886787779999688876565---6787
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH-HHHHHCCCCCCCE
Q ss_conf 322889999526311026897011001345788989879999379999970357762899999999-9765469999978
Q 006530 170 VFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR-SLYDIVPAENGDK 248 (641)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~~~~~~~-~~~~~~~~~~~d~ 248 (641)
...|.+++...... .......++++++|+|||||||.||||+++|++++.... .....+++.++|+
T Consensus 234 ~~~~~~~~~~~~~~-------------~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~ 300 (652)
T 1pg4_A 234 DLWWRDLIEKASPE-------------HQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDI 300 (652)
T ss_dssp EEEHHHHHTTSCSC-------------CCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCE
T ss_pred CEEHHHHHHHCCCC-------------CCCCCCCCCCCEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 40199998525777-------------78655587787799842688879845898753999999999998308999878
Q ss_pred EEEECCHHHHHHHH-HHHHHHHCCEEEEEC-------CHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 99978914589998-858654237058752-------5377999996637829971707899999999998741227999
Q 006530 249 FLSMLPPWHVYERA-CGYFIFSRGIELMYT-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARR 320 (641)
Q Consensus 249 ~l~~~pl~~~~~~~-~~~~~l~~G~~~v~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~ 320 (641)
+++.+|++|+.++. ..+.++..|+++++. ++..+++.++++++|+++++|+++..+.+......
T Consensus 301 ~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-------- 372 (652)
T 1pg4_A 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI-------- 372 (652)
T ss_dssp EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGT--------
T ss_pred EEECCCCEEEECHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHCCEEEEECHHHHHHHHHCCCCCC--------
T ss_conf 999168734420078889889748559998998889998999999998599099857999999984484322--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 99999998768788887673062023477896047999988999988743224678888999999886409821699603
Q 006530 321 VVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGG 400 (641)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gg 400 (641)
...+++++|.++++|
T Consensus 373 -----------------------------------------------------------------~~~~l~sLr~i~~gG 387 (652)
T 1pg4_A 373 -----------------------------------------------------------------EGTDRSSLRILGSVG 387 (652)
T ss_dssp -----------------------------------------------------------------TTCCCTTCCEEEEES
T ss_pred -----------------------------------------------------------------CCCCCCCEEEEEEEC
T ss_conf -----------------------------------------------------------------348967358999845
Q ss_pred CCCCHHH-HHHHHHCC---CEEEECCCCCCCCCEEEECCCC--CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEE
Q ss_conf 7899559-99999809---9046514655556702204899--9764532467689079996389986578999734999
Q 006530 401 GSLPMHI-DLFYEAIG---VKVQVGYGLTESSPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 474 (641)
Q Consensus 401 ~~l~~~l-~~~~~~~g---~~i~~~yG~tE~~~~~~~~~~~--~~~~~~~G~p~~~~~i~i~d~~~~~~~~~g~~Gel~v 474 (641)
+++++++ +.+.+.+| .++++.||+||++..+....+. ...++++|.|++|++++|+|+ ++++++.|+.|||++
T Consensus 388 e~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~-~g~~v~~g~~GEl~i 466 (652)
T 1pg4_A 388 EPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDN-EGHPQEGATEGNLVI 466 (652)
T ss_dssp SCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECT-TCCBCCSSEEEEEEE
T ss_pred CCCCHHHHHHHHHHHCCCCCCEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEECC-CCCCCCCCCEEEEEE
T ss_conf 8899999999999839878747733257650464003798876766786566768975899999-998967996189999
Q ss_pred EC--CCCCCCCCCCCHHHHHCCC--CCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCEEEECCCEEECCHHHHHH
Q ss_conf 24--7533333699111220059--8996336853677178888974345966999621455278089601216776999
Q 006530 475 RG--SQVMQGYFKNPSATKQALD--EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEA 550 (641)
Q Consensus 475 ~g--~~~~~gY~~~~~~~~~~~~--~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~ 550 (641)
+| |.++.||+++++.+.+.|. .+|||+|||+|++++ ||.+++.||+||+|++ +|++|+|.|||+.
T Consensus 467 ~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~----------dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~ 535 (652)
T 1pg4_A 467 TDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDE----------DGYYWITGRVDDVLNV-SGHRLGTAEIESA 535 (652)
T ss_dssp CSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECT----------TSCEEEEEESSSEEEE-TTEEEEHHHHHHH
T ss_pred CCCCCCHHHHHCCCHHHHHHHHHHCCCCEEECCCEEEECC----------CCCEEEEECCCCEEEE-CCEEECHHHHHHH
T ss_conf 1488842644408777777644424998888895799838----------9968999657888987-9999889999999
Q ss_pred HHCCCCCCEEEEEECCCC----CEEEEEECCHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 724945134899935998----0389995297899999987399878920027199999999999967226997412389
Q 006530 551 ALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIH 626 (641)
Q Consensus 551 l~~~p~V~~~~v~g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~ 626 (641)
|.+||+|.+|+|+|.+++ .+.++|+++++. ...+...++++++++++|+.|+ +|+.|+
T Consensus 536 l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~-------------~~~~~~~~~l~~~l~~~l~~~~-----~P~~i~ 597 (652)
T 1pg4_A 536 LVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGE-------------EPSPELYAEVRNWVRKEIGPLA-----TPDVLH 597 (652)
T ss_dssp HHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTC-------------CCCHHHHHHHHHHHHHHTCGGG-----CCSEEE
T ss_pred HHHCCCCCEEEEEEEECCCCCEEEEEEEEECCCC-------------CCCHHHHHHHHHHHHHHCCCCC-----CCEEEE
T ss_conf 9859883438999778578983899999989999-------------9879999999999997679873-----873999
Q ss_pred EECCCCCCCCCCCC
Q ss_conf 80689987878003
Q 006530 627 VVDEPFTVNFLCLA 640 (641)
Q Consensus 627 ~~~~~~~~~~~~l~ 640 (641)
++++.|.+.+||+-
T Consensus 598 ~v~~lP~T~sGKi~ 611 (652)
T 1pg4_A 598 WTDSLPKTRSGKIM 611 (652)
T ss_dssp ECSCCCBCTTSCBC
T ss_pred ECCCCCCCCCCCCH
T ss_conf 90898989974263
No 9
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=1.00 E-value=1 Score=552.73 Aligned_cols=477 Identities=22% Similarity=0.295 Sum_probs=388.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEECC
Q ss_conf 78421000123543204698259974899999999999999973999999899980897018999999996498898548
Q 006530 27 FTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAINVVRG 106 (641)
Q Consensus 27 ~~~~~~~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~n~~e~iv~~lA~~~~G~~~v~i~ 106 (641)
+.++.+.+.|++.++......-+++||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|++
T Consensus 5 l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~ 84 (503)
T 4fuq_A 5 LFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLN 84 (503)
T ss_dssp HHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEECC
T ss_conf 99999986799854998548996888999999999999999973989989999988998999999999997392998438
Q ss_pred CCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 99999999999871284399964914599999864026465389997077888888755787732288999952631102
Q 006530 107 SRSSSEELLHIYNHSESVALAVENPEFFNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKA 186 (641)
Q Consensus 107 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (641)
+.++.+++.++++++++++++++. .....+......... .+.....+. ...+.+...... .
T Consensus 85 ~~~~~~~l~~il~~~~~~~vi~~~-~~~~~~~~~~~~~~~--~~~~~~~~~------------~~~~~~~~~~~~---~- 145 (503)
T 4fuq_A 85 TAYTLHELDYFITDAEPKIVVCDP-SKRDGIAAIAAKVGA--TVETLGPDG------------RGSLTDAAAGAS---E- 145 (503)
T ss_dssp TTCCHHHHHHHHHHHCCSEEEECG-GGTTTTHHHHHHHTC--EEEECCTTS------------CSHHHHHHHTSC---S-
T ss_pred CCCCHHHHHHHHHHCCCCEEEECC-HHHHHHHHHHHHCCC--EEEEECCCC------------CCCCCHHHHCCC---C-
T ss_conf 778999999999734972999873-156789998752385--499946876------------443001332178---8-
Q ss_pred CCCCCHHHCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHH-HH
Q ss_conf 68970110013457889898799993799999703577628999999999765469999978999789145899988-58
Q 006530 187 FSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GY 265 (641)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~ 265 (641)
........++++++++|||||||.||+|.++|+++.+.+......+++.++|++++.+|++|.+++.. .+
T Consensus 146 ---------~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~ 216 (503)
T 4fuq_A 146 ---------AFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASN 216 (503)
T ss_dssp ---------CCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHH
T ss_pred ---------CCCCCCCCCCCEEEEEECCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf ---------76767889998699997987546782799868999999999999738999877999677277777899999
Q ss_pred HHHHCCEEEEEC---CHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 654237058752---53779999966378299717078999999999987412279999999999876878888767306
Q 006530 266 FIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEG 342 (641)
Q Consensus 266 ~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (641)
.++..|+++++. ++..+++.++ ++|++.++|+++..+.......
T Consensus 217 ~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~------------------------------- 263 (503)
T 4fuq_A 217 VTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLT------------------------------- 263 (503)
T ss_dssp HHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCS-------------------------------
T ss_pred HHHHHCCEEEECCCCCHHHHHHHHH--HCCEEEEHHHHHHHHHHCCCCC-------------------------------
T ss_conf 9998198999858899999999985--2478987899999998487865-------------------------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH-HHHHHHCCCEEEEC
Q ss_conf 20234778960479999889999887432246788889999998864098216996037899559-99999809904651
Q 006530 343 FCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVG 421 (641)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gg~~l~~~l-~~~~~~~g~~i~~~ 421 (641)
...++++|.+++||++++..+ +.+.+.++.++++.
T Consensus 264 --------------------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~ 299 (503)
T 4fuq_A 264 --------------------------------------------KETTGHMRLFISGSAPLLADTHREWSAKTGHAVLER 299 (503)
T ss_dssp --------------------------------------------TTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEEC
T ss_pred --------------------------------------------CCCHHHCEEEEECCCCCCHHHHHHHHHHHCCCCCCE
T ss_conf --------------------------------------------235300479998888899999999999759875130
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHCCCCCCCCC
Q ss_conf 46555567022048999764532467689079996389986578999734999247533333699111220059899633
Q 006530 422 YGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLN 501 (641)
Q Consensus 422 yG~tE~~~~~~~~~~~~~~~~~~G~p~~~~~i~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~ 501 (641)
||+||++..+.........++++|.|+++++++|+|++++++++.|+.|||+++|++++.||+++++.+.+.|..++||+
T Consensus 300 YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~ 379 (503)
T 4fuq_A 300 YGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFI 379 (503)
T ss_dssp CEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEE
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCHHHHHCCCHHHHHHHHCCCCCEE
T ss_conf 76110675102688878769830368888089999788898994898469999878553665689466676417899737
Q ss_pred CCCEEEECCCCCCCCCCCCCCEEEEECCCCCEEEECCCEEECCHHHHHHHHCCCCCCEEEEEECCCC----CEEEEEECC
Q ss_conf 6853677178888974345966999621455278089601216776999724945134899935998----038999529
Q 006530 502 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPD 577 (641)
Q Consensus 502 TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~----~~~a~vv~~ 577 (641)
|||+|++++ +|.+++.||+||+|++ +|++|+|.|||+.|.+||+|.+++|++.+++ .+.++|+++
T Consensus 380 TGDl~~~~~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~ 448 (503)
T 4fuq_A 380 TGDLGKIDE----------RGYVHILGRGKDLVIT-GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRD 448 (503)
T ss_dssp EEEEEEECT----------TCEEEECCSSTTCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEEC
T ss_pred CCEEEEECC----------CCCEEEEECCCCEEEE-CCEEECHHHHHHHHHHCCCEEEEEEEEEECHHCCCEEEEEEEEC
T ss_conf 662589958----------9729997237787998-99999889999999859882379999727420196569999968
Q ss_pred HHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 789999998739987892002719999999999996722699741238980689987878003
Q 006530 578 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 640 (641)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 640 (641)
++ ...+.++++++++++|+.|+ .|+.|+++++.|.+.+||+-
T Consensus 449 ~~----------------~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi~ 490 (503)
T 4fuq_A 449 KG----------------ATIDEAQVLHGLDGQLAKFK-----MPKKVIFVDDLPRNTMGKVQ 490 (503)
T ss_dssp TT----------------CCCCHHHHHHHHBTTBCGGG-----CCSEEEEESCCCBCTTSCBC
T ss_pred CC----------------CCCCHHHHHHHHHHHCCCCC-----CCCEEEEECCCCCCCCCCEE
T ss_conf 99----------------99999999999986463678-----98789997888999640402
No 10
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=1.00 E-value=1 Score=551.49 Aligned_cols=484 Identities=20% Similarity=0.245 Sum_probs=399.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCE
Q ss_conf 35898784210001235432046982599748999999999999999739999998999808970189999999964988
Q 006530 22 HGFRVFTRNCVDAVATRIRISRRNHRFRVFCESKLEQEILDFAEGLRVIGVKPEEKLSLFSDNSCRWLVADQGMLATGAI 101 (641)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~n~~e~iv~~lA~~~~G~~ 101 (641)
..+..++++++.+.|+++|+++++ +++||+||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus 30 ~tl~~~l~~~a~~~p~~~Al~~~~---~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav 106 (544)
T 3o83_A 30 QPLTRILTVGVQSHPHSLAIICGE---RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVV 106 (544)
T ss_dssp CCTTHHHHHHHHHCTTSEEEEETT---EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred CCHHHHHHHHHHHCCCCEEEECCC---CCEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCE
T ss_conf 888999999998689955998699---75669999999999999999779899899999889978999999999970937
Q ss_pred EEECCCCCCHHHHHHHHHHCCCEEEEECCHHH----HHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 98548999999999998712843999649145----99999864026465389997077888888755787732288999
Q 006530 102 NVVRGSRSSSEELLHIYNHSESVALAVENPEF----FNRIAETLCSKAAMRFIILLWGKKSSVAPDIVEEIPVFSYDEII 177 (641)
Q Consensus 102 ~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (641)
++|+++.++.+++.+++++++++++++++... ..............+.++...... ....+.++.
T Consensus 107 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 175 (544)
T 3o83_A 107 VLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQA-----------TDFGLLDWI 175 (544)
T ss_dssp EEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCT-----------TSEEHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCC-----------CCCCHHHHH
T ss_conf 844787799999999998658169997153355438999999763066734379826876-----------643322343
Q ss_pred HHHHHHHCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHH
Q ss_conf 95263110268970110013457889898799993799999703577628999999999765469999978999789145
Q 006530 178 DLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 257 (641)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~ 257 (641)
....... .......++++++++|||||||.||+|.++|+++.+.+......+++.++|++++++|++|
T Consensus 176 ~~~~~~~------------~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 243 (544)
T 3o83_A 176 ETPAETF------------VDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPH 243 (544)
T ss_dssp HSCCSSC------------CCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTS
T ss_pred HCCCCCC------------CCCCCCCCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCCE
T ss_conf 2255454------------5555699666599997887626786577516889999999999738898772788337635
Q ss_pred HHHHHH--HHHHHHCCEEEEEC---CHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 899988--58654237058752---5377999996637829971707899999999998741227999999999987687
Q 006530 258 VYERAC--GYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFA 332 (641)
Q Consensus 258 ~~~~~~--~~~~l~~G~~~v~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (641)
.+++.. .+.++..|+++++. ++..+++.++++++|++.++|+++..+.......
T Consensus 244 ~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------- 302 (544)
T 3o83_A 244 NFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQY--------------------- 302 (544)
T ss_dssp HHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTT---------------------
T ss_pred EEECCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHCHHHC---------------------
T ss_conf 76010577999997498899888999899999999978988993559999999552321---------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH-HHHH
Q ss_conf 888876730620234778960479999889999887432246788889999998864098216996037899559-9999
Q 006530 333 YTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFY 411 (641)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~i~~gg~~l~~~l-~~~~ 411 (641)
...++++|.+++||+++++.+ +.+.
T Consensus 303 ------------------------------------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~ 328 (544)
T 3o83_A 303 ------------------------------------------------------KDQIQSLKLLQVGGASFPESLARQVP 328 (544)
T ss_dssp ------------------------------------------------------HHHHTTCCEEEEESSCCCHHHHTHHH
T ss_pred ------------------------------------------------------CCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf ------------------------------------------------------35678401899848879999999999
Q ss_pred HHCCCEEEECCCCCCCCCEEEECCCCC-CCCCCCCCCC-CCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCHH
Q ss_conf 980990465146555567022048999-7645324676-89079996389986578999734999247533333699111
Q 006530 412 EAIGVKVQVGYGLTESSPVIAARRPTC-NVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSA 489 (641)
Q Consensus 412 ~~~g~~i~~~yG~tE~~~~~~~~~~~~-~~~~~~G~p~-~~~~i~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~ 489 (641)
+.++.++++.||+||++..+....... ...+++|.|+ ++++++|+| +++++++.|+.|||+++||+++.||+++++.
T Consensus 329 ~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~ 407 (544)
T 3o83_A 329 EVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEH 407 (544)
T ss_dssp HHHCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHH
T ss_pred HHHCCCEEEEECCCCCCCEEECCCCCHHHCCCCCCEECCCCCEEEEEC-CCCCCCCCCCEEEEEEECCCCCHHHCCCHHH
T ss_conf 872980770345664553632578936653577744469985799978-9988898898359999367705332489355
Q ss_pred HHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCEEEECCCEEECCHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 22005989963368536771788889743459669996214552780896012167769997249451348999359980
Q 006530 490 TKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 569 (641)
Q Consensus 490 ~~~~~~~~g~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~g~~~~~ 569 (641)
+.+.|+.++||+|||+|++++ +|.+++.||+||+|++ +|++|+|.+||+.|.+||+|.+++|++.+++.
T Consensus 408 t~~~f~~~g~~~TGDlg~~~~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~ 476 (544)
T 3o83_A 408 NSQVFDEDNYYYSGDLVQRTP----------DGNLRVVGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQ 476 (544)
T ss_dssp HHHHBCTTCCEEEEEEEEECT----------TSCEEEEEEEC--------------------------------------
T ss_pred HHHHCCCCCCEECCCEEEECC----------CCCEEEEEECCCEEEE-CCEEECHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 443078889767687799859----------9988997305887971-99998899999999869874178899355877
Q ss_pred ----EEEEEECCHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHH-HHHHHHCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf ----3899952978999999873998789200271999999999-9996722699741238980689987878003
Q 006530 570 ----PGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA 640 (641)
Q Consensus 570 ----~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 640 (641)
+.++|+++. .+.+.+++++++++ +|+.|+ .|+.|.++++.|.+.+||+-
T Consensus 477 ~g~~~~a~vv~~~-----------------~~~~~~~l~~~~~~~~l~~~~-----~P~~i~~v~~lP~t~~GKi~ 530 (544)
T 3o83_A 477 FGEKSCAFIVSRN-----------------PELKAVVLRRHLMELGIAQYK-----LPDQIKLIESLPLTAVGKVD 530 (544)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CCCEEEEEEEECC-----------------CCCCHHHHHHHHHHCCCCCCC-----CCCEEEEECCCCCCCCCCCC
T ss_conf 7726799999578-----------------777889999999867998444-----88589995467989888886
Done!