BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006531
(641 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 115/280 (41%), Gaps = 60/280 (21%)
Query: 158 KSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLS--NCEGLV 215
K+ +LL+D R+ ++ L+S+ + DQ + RL +L+ + GL
Sbjct: 69 KATADLLEDATQPGRVALE----LRSVPLPQFPDQ-------AFRLSHLQHXTIDAAGLX 117
Query: 216 KLPQSSLSLCSLREIEICKCSSLVSFP-EVALPSKLKKIRISSCDALKSLPEEWMCDTNS 274
+LP + L + + + + L + P +A ++L+++ I +C L LPE + T++
Sbjct: 118 ELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEP-LASTDA 175
Query: 275 SLE---ILYIEGCRSLTYIAAVQLPSSLKKLQIHRCDNIRTLTVEEGIQCSSGRRYTSSL 331
S E ++ ++ R L + LP+S+ LQ N+++L + + G
Sbjct: 176 SGEHQGLVNLQSLR-LEWTGIRSLPASIANLQ-----NLKSLKIRNSPLSALG-----PA 224
Query: 332 LEHLHIENCPSLTCIFSKNELPATLESLEVGNLPPSLKSLFVWDCPKLESIAERLDNNTS 391
+ HL P L+ L + C L +
Sbjct: 225 IHHL------------------------------PKLEELDLRGCTALRNYPPIFGGRAP 254
Query: 392 LETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFP 431
L+ + + +C NL LP +H L QL + ++ C NL P
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 86/215 (40%), Gaps = 36/215 (16%)
Query: 375 DCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGG 434
D L + + LET+++ L+ LP+ + +L +LR ++I++C L PE
Sbjct: 112 DAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPE-- 168
Query: 435 LPCAKLTTLVICHCERLEALPKGLHNLTSLQHLAIIGGEFPSLEEDG---LPTNLQSLRI 491
P A T H +GL NL SL+ LE G LP ++ +L+
Sbjct: 169 -PLAS-TDASGEH--------QGLVNLQSLR-----------LEWTGIRSLPASIANLQN 207
Query: 492 WGNMEIWKSMIER-GRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTALPLPASLTSLR 550
+++I S + G H L EL ++GC P+ R A L L
Sbjct: 208 LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR--------APLKRLI 259
Query: 551 IVDFPNLERLSSSIVDLQNLTSLYLYDCPKLKYFP 585
+ D NL L I L L L L C L P
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 86/204 (42%), Gaps = 47/204 (23%)
Query: 206 LRLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVSFPEVALPSKLKKIRISSCD--ALKS 263
L L+N GL LP+ L SL + C+SL PE LP LK + + + + AL
Sbjct: 76 LELNNL-GLSSLPELPPHLESL----VASCNSLTELPE--LPQSLKSLLVDNNNLKALSD 128
Query: 264 LPE--EWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKKL---------------QIHR 306
LP E++ +N+ LE L S I V +SLKKL Q+
Sbjct: 129 LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDN-NSLKKLPDLPPSLEFIAAGNNQLEE 187
Query: 307 CDNIRTLTVEEGIQCSSGRRYT--------------SSLLEHL-HIENCPSLTCIFSKNE 351
++ L I + +++LE L ++N P LT I++ N
Sbjct: 188 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 247
Query: 352 LPATLESLEVGNLPPSLKSLFVWD 375
L TL +LPPSL++L V D
Sbjct: 248 LLKTL-----PDLPPSLEALNVRD 266
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 202 RLEYLRLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVSFPEVALP-SKLKKIRISSCDA 260
RLEY+ + EGLV L +L +C+L++I ++LV E+ L ++L IR S
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLGMCNLKDIP--NLTALVRLEELELSGNRLDLIRPGSFQG 200
Query: 261 LKSLPEEWM 269
L SL + W+
Sbjct: 201 LTSLRKLWL 209
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 202 RLEYLRLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVSFPEVALP-SKLKKIRISSCDA 260
RLEY+ + EGLV L +L +C+L++I ++LV E+ L ++L IR S
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLGMCNLKDIP--NLTALVRLEELELSGNRLDLIRPGSFQG 200
Query: 261 LKSLPEEWM 269
L SL + W+
Sbjct: 201 LTSLRKLWL 209
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 403 LKILPSGLHN-LRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEALPKGLHN- 460
L+ LP G+ + L QL +++ S + S P+G T++ H +L++LP G+ +
Sbjct: 40 LQSLPHGVFDKLTQLTKLSL-SQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDK 98
Query: 461 LTSLQHLAIIGGEFPSLEEDGLPTNLQSL-RIWGNMEIW 498
LT L+ LA+ + S+ DG+ L SL +IW + W
Sbjct: 99 LTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPW 136
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 202 RLEYLRLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVSFPEVALPSK-LKKIRISSCDA 260
RL Y+ EGL L +L++C+LREI + L+ E+ L L IR S
Sbjct: 172 RLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQG 229
Query: 261 LKSLPEEWM 269
L L + WM
Sbjct: 230 LMHLQKLWM 238
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 266 EEWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKKLQIHRCDNIRTLTVEEG------I 319
+E + + +SSL Y+ G R +T +LP + K++ R +N++ + VE +
Sbjct: 556 DELLKNPDSSLTGEYLSGKRKITVNKTRRLPYASLKIKGVRHNNLKNIDVEIPLGVFVCV 615
Query: 320 QCSSGRRYTSSLLEHLHIENCPSLTCIFSKNELPA 354
SG +S ++E L+ P+L + K +LPA
Sbjct: 616 TGVSGSGKSSLVMETLY----PALMNLLHKTKLPA 646
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 385 RLDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLV 444
+ D T L+T+ Y C N+ ++P+ L + + +NLV GG P +K
Sbjct: 269 KFDEETFLKTLQDYKCTNVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEA 328
Query: 445 ICHCERLEALPKGLHNLTSLQHLAII 470
+ L + +G + LT II
Sbjct: 329 VARRFNLPGVRQG-YGLTETTSAIII 353
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 389 NTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTL 443
NT+ +T+ I N E L LP G + L RG+ +Q L + G L A L
Sbjct: 203 NTA-QTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVF 256
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 202 RLEYLRLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVSFPEVALP-SKLKKIRISSCDA 260
+LEY+ EGL L +L +C+++++ + LV E+ + + +IR S
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHG 240
Query: 261 LKSLPEEWMCDTNSSL 276
L SL + W+ ++ SL
Sbjct: 241 LSSLKKLWVMNSQVSL 256
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 394 TISIYNCENLKILPSG----LHNLRQLRGITIQSCANLVSFPEGGL-PCAKLTTLVICHC 448
T I L+ LP+G L NL++L + Q L S P+G LT L + H
Sbjct: 88 TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ----LQSLPDGVFDKLTNLTYLYLYH- 142
Query: 449 ERLEALPKGLHN-LTSLQHLAIIGGEFPSLEE 479
+L++LPKG+ + LT+L L + + SL E
Sbjct: 143 NQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPE 174
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 385 RLDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLV 444
+ D T L+T+ Y C ++ ++P+ L + + +NLV GG P +K
Sbjct: 269 KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEA 328
Query: 445 ICHCERLEALPKGLHNLTSLQHLAII 470
+ L + +G + LT II
Sbjct: 329 VARRFNLPGVRQG-YGLTETTSAIII 353
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 385 RLDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLV 444
+ D T L+T+ Y C ++ ++P+ L + + +NLV GG P +K
Sbjct: 269 KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEA 328
Query: 445 ICHCERLEALPKGLHNLTSLQHLAII 470
+ L + +G + LT II
Sbjct: 329 VARRFNLPGVRQG-YGLTETTSAIII 353
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 440 LTTLVICHCERLEALPKGLHNLTSLQHLAIIGGEFPSLEEDGLP--TNLQSLRIWGN 494
L L +C C +L LP+G+ LT L HLA+ + S+ ++L ++GN
Sbjct: 114 LKELFMC-CNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
>pdb|1VHB|A Chain A, Bacterial Dimeric Hemoglobin From Vitreoscilla Stercoraria
pdb|1VHB|B Chain B, Bacterial Dimeric Hemoglobin From Vitreoscilla Stercoraria
pdb|2VHB|A Chain A, Azide Adduct Of The Bacterial Hemoglobin From Vitreoscilla
Stercoraria
pdb|2VHB|B Chain B, Azide Adduct Of The Bacterial Hemoglobin From Vitreoscilla
Stercoraria
pdb|3VHB|A Chain A, Imidazole Adduct Of The Bacterial Hemoglobin From
Vitreoscilla Sp.
pdb|3VHB|B Chain B, Imidazole Adduct Of The Bacterial Hemoglobin From
Vitreoscilla Sp.
pdb|4VHB|A Chain A, Thiocyanate Adduct Of The Bacterial Hemoglobin From
Vitreoscilla Sp.
pdb|4VHB|B Chain B, Thiocyanate Adduct Of The Bacterial Hemoglobin From
Vitreoscilla Sp
Length = 146
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 41 GSSQGVEEFPKLRELHILRCSKLQGAFPKHLPALQMLVIRECEELSISITSLPALCK-LV 99
G + +E+ PK + +L ++ P LPA++ + ++ C+ ++ P + + L+
Sbjct: 46 GRQESLEQ-PKALAMTVLAAAQNIENLPAILPAVKKIAVKHCQA-GVAAAHYPIVGQELL 103
Query: 100 SGCKKVVGRSATDHL 114
K+V+G +ATD +
Sbjct: 104 GAIKEVLGDAATDDI 118
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 429 SFPEGGLP-----CAKLTTLVICHCERLEALPKGLHNLTSLQHLAIIGGEFPSLEEDGLP 483
SF E LP LT L + C+ + P ++L+SLQ L + + S+ DG+
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV-PDGIF 514
Query: 484 TNLQSL-RIWGNMEIW 498
L SL +IW + W
Sbjct: 515 DRLTSLQKIWLHTNPW 530
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,435,543
Number of Sequences: 62578
Number of extensions: 740111
Number of successful extensions: 1620
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1592
Number of HSP's gapped (non-prelim): 35
length of query: 641
length of database: 14,973,337
effective HSP length: 105
effective length of query: 536
effective length of database: 8,402,647
effective search space: 4503818792
effective search space used: 4503818792
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)