Query 006531
Match_columns 641
No_of_seqs 268 out of 3146
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 00:38:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 9.9E-36 2.1E-40 347.0 25.8 526 21-602 69-605 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.3E-35 2.9E-40 345.9 25.2 512 16-582 88-608 (968)
3 PLN03210 Resistant to P. syrin 99.9 1.8E-23 4E-28 244.1 26.0 349 131-529 549-909 (1153)
4 PLN03210 Resistant to P. syrin 99.9 2E-23 4.3E-28 243.9 23.8 312 201-585 589-910 (1153)
5 KOG0618 Serine/threonine phosp 99.9 8.9E-27 1.9E-31 243.9 -8.2 456 74-630 23-510 (1081)
6 KOG4194 Membrane glycoprotein 99.9 3.1E-23 6.8E-28 206.8 5.7 219 366-598 221-446 (873)
7 KOG0472 Leucine-rich repeat pr 99.9 1.4E-25 2.9E-30 214.1 -11.8 369 137-581 157-541 (565)
8 KOG0618 Serine/threonine phosp 99.9 1.1E-24 2.3E-29 228.5 -6.7 325 203-580 158-488 (1081)
9 KOG0444 Cytoskeletal regulator 99.9 8.8E-24 1.9E-28 212.0 -2.2 365 137-558 4-376 (1255)
10 KOG4194 Membrane glycoprotein 99.9 1.7E-22 3.6E-27 201.6 5.8 197 366-576 245-447 (873)
11 KOG0444 Cytoskeletal regulator 99.8 1.9E-23 4E-28 209.7 -5.5 364 167-604 6-375 (1255)
12 KOG0472 Leucine-rich repeat pr 99.8 3.1E-23 6.8E-28 198.1 -8.3 402 137-603 65-540 (565)
13 PRK15387 E3 ubiquitin-protein 99.6 2.4E-14 5.2E-19 156.0 15.6 257 226-581 202-458 (788)
14 PRK15387 E3 ubiquitin-protein 99.5 9.1E-14 2E-18 151.5 15.7 255 275-603 202-457 (788)
15 KOG4341 F-box protein containi 99.4 1E-14 2.3E-19 141.2 -2.6 306 140-471 138-461 (483)
16 PRK15370 E3 ubiquitin-protein 99.4 1.9E-12 4.1E-17 142.3 12.7 122 168-314 178-299 (754)
17 PRK15370 E3 ubiquitin-protein 99.3 3.1E-12 6.8E-17 140.5 10.8 37 275-314 179-215 (754)
18 KOG4341 F-box protein containi 99.3 8.4E-14 1.8E-18 135.0 -2.8 55 366-420 401-458 (483)
19 KOG4237 Extracellular matrix p 99.3 2.5E-13 5.4E-18 130.7 -2.8 88 384-473 268-357 (498)
20 KOG4237 Extracellular matrix p 99.3 7.4E-14 1.6E-18 134.3 -7.2 110 137-259 88-199 (498)
21 KOG0617 Ras suppressor protein 99.2 1.3E-13 2.9E-18 117.4 -5.3 158 366-533 33-192 (264)
22 KOG0617 Ras suppressor protein 99.2 1.7E-13 3.7E-18 116.7 -8.2 158 386-585 29-189 (264)
23 KOG4658 Apoptotic ATPase [Sign 99.1 1.4E-10 3.1E-15 129.6 9.9 110 137-259 542-653 (889)
24 cd00116 LRR_RI Leucine-rich re 99.0 8.1E-11 1.8E-15 119.7 2.1 34 438-471 278-316 (319)
25 cd00116 LRR_RI Leucine-rich re 99.0 6.8E-11 1.5E-15 120.3 0.2 233 367-604 24-291 (319)
26 KOG4658 Apoptotic ATPase [Sign 98.9 2.4E-09 5.2E-14 120.0 8.0 107 166-283 543-651 (889)
27 KOG3207 Beta-tubulin folding c 98.6 8.5E-09 1.8E-13 101.4 0.6 204 366-578 121-336 (505)
28 KOG3207 Beta-tubulin folding c 98.5 1.8E-08 3.9E-13 99.1 0.7 132 459-603 169-313 (505)
29 KOG1259 Nischarin, modulator o 98.5 1.7E-08 3.7E-13 94.3 0.5 132 437-586 283-416 (490)
30 KOG0532 Leucine-rich repeat (L 98.5 3.7E-09 8.1E-14 107.1 -4.9 189 369-601 78-270 (722)
31 COG4886 Leucine-rich repeat (L 98.4 2.1E-07 4.6E-12 97.5 5.5 176 387-581 113-290 (394)
32 PF14580 LRR_9: Leucine-rich r 98.4 1E-07 2.3E-12 85.5 2.6 125 391-521 20-149 (175)
33 PRK15386 type III secretion pr 98.4 8.9E-07 1.9E-11 89.2 9.4 94 386-493 48-141 (426)
34 KOG2120 SCF ubiquitin ligase, 98.4 6.3E-09 1.4E-13 97.1 -6.0 180 226-424 186-373 (419)
35 PF14580 LRR_9: Leucine-rich r 98.4 2.9E-07 6.3E-12 82.6 4.0 104 137-259 16-124 (175)
36 KOG2120 SCF ubiquitin ligase, 98.4 2.6E-08 5.7E-13 93.1 -2.8 184 202-402 186-375 (419)
37 KOG1909 Ran GTPase-activating 98.3 3.8E-08 8.2E-13 94.3 -3.2 137 462-603 157-310 (382)
38 KOG1259 Nischarin, modulator o 98.3 2E-07 4.4E-12 87.3 1.5 214 49-285 181-410 (490)
39 KOG1909 Ran GTPase-activating 98.2 2.3E-07 4.9E-12 89.1 -1.4 191 437-633 91-311 (382)
40 PRK15386 type III secretion pr 98.1 8.2E-06 1.8E-10 82.4 8.6 34 366-401 72-105 (426)
41 COG4886 Leucine-rich repeat (L 98.1 2.6E-06 5.7E-11 89.2 4.9 192 394-604 97-290 (394)
42 KOG1947 Leucine rich repeat pr 98.1 1E-06 2.2E-11 95.2 0.8 61 20-82 160-224 (482)
43 KOG0532 Leucine-rich repeat (L 97.9 5.6E-07 1.2E-11 91.7 -4.0 126 366-497 121-247 (722)
44 KOG1947 Leucine rich repeat pr 97.9 3.9E-06 8.6E-11 90.6 1.5 116 165-287 185-308 (482)
45 PF13855 LRR_8: Leucine rich r 97.9 1.8E-05 3.8E-10 58.0 4.4 35 201-235 25-59 (61)
46 PF13855 LRR_8: Leucine rich r 97.8 3E-05 6.5E-10 56.7 4.9 57 201-259 1-60 (61)
47 PLN03150 hypothetical protein; 97.7 7.7E-05 1.7E-09 82.3 8.1 108 202-311 419-529 (623)
48 KOG3665 ZYG-1-like serine/thre 97.7 2.7E-05 5.8E-10 85.6 4.0 110 138-259 120-231 (699)
49 PLN03150 hypothetical protein; 97.7 6.3E-05 1.4E-09 83.0 6.9 104 392-495 420-526 (623)
50 KOG3665 ZYG-1-like serine/thre 97.6 4.4E-05 9.5E-10 84.0 4.3 134 166-308 120-261 (699)
51 KOG0531 Protein phosphatase 1, 97.6 9E-06 2E-10 85.4 -1.4 215 366-603 95-317 (414)
52 KOG2982 Uncharacterized conser 97.5 8.8E-05 1.9E-09 70.0 3.6 195 193-428 63-263 (418)
53 PF12799 LRR_4: Leucine Rich r 97.3 0.00026 5.7E-09 47.4 3.7 40 201-242 1-40 (44)
54 KOG0531 Protein phosphatase 1, 97.3 3.4E-05 7.4E-10 81.1 -1.3 214 366-603 72-289 (414)
55 PF12799 LRR_4: Leucine Rich r 97.2 0.00039 8.5E-09 46.6 3.6 39 439-478 2-40 (44)
56 KOG1859 Leucine-rich repeat pr 97.2 9.8E-06 2.1E-10 85.1 -6.8 123 367-496 165-291 (1096)
57 KOG2982 Uncharacterized conser 97.0 0.00054 1.2E-08 64.9 3.7 131 388-521 69-208 (418)
58 KOG1859 Leucine-rich repeat pr 97.0 5.1E-06 1.1E-10 87.2 -11.5 124 391-522 165-289 (1096)
59 COG5238 RNA1 Ran GTPase-activa 96.7 0.00085 1.9E-08 62.7 1.9 211 366-580 30-284 (388)
60 KOG1644 U2-associated snRNP A' 96.2 0.01 2.2E-07 53.4 5.9 84 437-521 63-149 (233)
61 KOG2739 Leucine-rich acidic nu 96.1 0.0017 3.6E-08 60.8 0.1 108 165-284 40-153 (260)
62 KOG1644 U2-associated snRNP A' 96.0 0.017 3.7E-07 52.0 6.3 78 439-521 43-122 (233)
63 COG5238 RNA1 Ran GTPase-activa 96.0 0.011 2.5E-07 55.4 5.2 142 139-284 29-195 (388)
64 KOG3864 Uncharacterized conser 95.8 0.00058 1.3E-08 61.1 -3.9 68 15-85 119-189 (221)
65 KOG4579 Leucine-rich repeat (L 95.6 0.00095 2.1E-08 55.9 -3.0 109 367-478 28-139 (177)
66 KOG4579 Leucine-rich repeat (L 94.9 0.0023 5E-08 53.6 -2.8 33 545-578 78-110 (177)
67 KOG2123 Uncharacterized conser 94.7 0.0067 1.4E-07 57.2 -0.7 100 49-174 18-123 (388)
68 KOG2123 Uncharacterized conser 94.7 0.0015 3.3E-08 61.3 -4.8 102 413-518 18-123 (388)
69 KOG3864 Uncharacterized conser 93.9 0.013 2.9E-07 52.6 -0.4 84 142-236 103-187 (221)
70 KOG2739 Leucine-rich acidic nu 93.4 0.06 1.3E-06 50.6 2.8 60 224-284 42-101 (260)
71 PF13306 LRR_5: Leucine rich r 93.0 0.56 1.2E-05 39.9 8.3 101 137-257 9-112 (129)
72 PF13306 LRR_5: Leucine rich r 90.9 1.1 2.3E-05 38.1 7.5 106 159-282 3-111 (129)
73 PF13504 LRR_7: Leucine rich r 89.9 0.25 5.4E-06 25.3 1.6 11 569-579 2-12 (17)
74 PF00560 LRR_1: Leucine Rich R 89.6 0.22 4.7E-06 27.5 1.3 18 203-221 2-19 (22)
75 smart00367 LRR_CC Leucine-rich 86.0 0.64 1.4E-05 26.8 1.9 16 168-183 2-17 (26)
76 smart00370 LRR Leucine-rich re 67.5 3.5 7.7E-05 23.6 1.3 18 462-479 2-19 (26)
77 smart00369 LRR_TYP Leucine-ric 67.5 3.5 7.7E-05 23.6 1.3 18 462-479 2-19 (26)
78 smart00365 LRR_SD22 Leucine-ri 51.0 11 0.00023 21.9 1.4 16 462-477 2-17 (26)
79 KOG3763 mRNA export factor TAP 47.7 12 0.00027 39.5 2.2 11 249-259 271-281 (585)
80 PF13516 LRR_6: Leucine Rich r 42.9 18 0.00039 20.1 1.4 13 49-61 1-13 (24)
81 smart00364 LRR_BAC Leucine-ric 41.5 18 0.00038 21.0 1.2 16 569-585 3-18 (26)
82 KOG3763 mRNA export factor TAP 33.0 25 0.00054 37.4 1.7 80 223-303 216-307 (585)
83 PF05725 FNIP: FNIP Repeat; I 24.6 1.2E+02 0.0027 19.9 3.4 12 481-492 31-42 (44)
84 smart00368 LRR_RI Leucine rich 21.5 66 0.0014 18.8 1.4 13 201-213 2-14 (28)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.9e-36 Score=346.97 Aligned_cols=526 Identities=15% Similarity=0.098 Sum_probs=220.7
Q ss_pred CCCcEEEecccccccccccCcCCCCCCCCCCccEEEeccCcchhccCCC----CCCCeeEEEEecCCCcc-ccCCChhhH
Q 006531 21 PCLETLCFENMQEWEDWIPHGSSQGVEEFPKLRELHILRCSKLQGAFPK----HLPALQMLVIRECEELS-ISITSLPAL 95 (641)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~lp~----~~~~L~~L~l~~~~~~~-~~~~~~~~L 95 (641)
.++.+|++.+.. +..... ..+..+++|+.|++++|. +.+.+|. .+++|++|++++|.... .....+++|
T Consensus 69 ~~v~~L~L~~~~-i~~~~~----~~~~~l~~L~~L~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L 142 (968)
T PLN00113 69 SRVVSIDLSGKN-ISGKIS----SAIFRLPYIQTINLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNL 142 (968)
T ss_pred CcEEEEEecCCC-ccccCC----hHHhCCCCCCEEECCCCc-cCCcCChHHhccCCCCCEEECcCCccccccCccccCCC
Confidence 355666665432 222111 345567777777776653 3334553 35567777776665431 223345666
Q ss_pred HHH-HhcCccee-eecccccCCCCCceeecCCCccccccCCcCCCCCCcceEeecCcCCchhhhhcchHHhhcCCCCcEE
Q 006531 96 CKL-VSGCKKVV-GRSATDHLGSQNSVVCRDTSNQVFLARPLKPRIPKLEELEINNIKNETDIWKSHNELLQDICSLKRL 173 (641)
Q Consensus 96 ~~L-l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L 173 (641)
++| +++|.... .+..+ ...+++++++.............+..+++|++|++++|..... . +..+..+++|++|
T Consensus 143 ~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~---~-p~~l~~l~~L~~L 217 (968)
T PLN00113 143 ETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ---I-PRELGQMKSLKWI 217 (968)
T ss_pred CEEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc---C-ChHHcCcCCccEE
Confidence 666 66665432 12111 1111122222211111111111223444444444444432211 1 1223444444444
Q ss_pred EeccCCcccccccchhhhhhhhhhccCCCccEEEeccCcCccccccccCCCCCccEEEecCCCCCccCCC-ccCCCCccE
Q 006531 174 TIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVSFPE-VALPSKLKK 252 (641)
Q Consensus 174 ~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~l~~-~~~l~~L~~ 252 (641)
++++|.....+|.. +..+ ++|++|++++|...+.+|..++.+++|++|++++|.....+|. +..+++|++
T Consensus 218 ~L~~n~l~~~~p~~-----l~~l----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 288 (968)
T PLN00113 218 YLGYNNLSGEIPYE-----IGGL----TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS 288 (968)
T ss_pred ECcCCccCCcCChh-----HhcC----CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCE
Confidence 44443322222222 3333 4444444444444334444444444444444444432222332 334444444
Q ss_pred EEccCCcCCccCChhhhhccCCCccEEEcccccCCcccccc-CCCCCCcEEecccCcccccccccccccccCCCcccccc
Q 006531 253 IRISSCDALKSLPEEWMCDTNSSLEILYIEGCRSLTYIAAV-QLPSSLKKLQIHRCDNIRTLTVEEGIQCSSGRRYTSSL 331 (641)
Q Consensus 253 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~ 331 (641)
|++++|.....+|..+... ++|+.|++++|......+.. ..+++|+.|++++|.....+| ..+. ..++
T Consensus 289 L~Ls~n~l~~~~p~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p--~~l~-------~~~~ 357 (968)
T PLN00113 289 LDLSDNSLSGEIPELVIQL--QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP--KNLG-------KHNN 357 (968)
T ss_pred EECcCCeeccCCChhHcCC--CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC--hHHh-------CCCC
Confidence 4444444333333332222 44444444444322222221 333444444444443322222 1111 1223
Q ss_pred ccccccccCCCcccccccCCCchhhhcccccCCCCCccEEEeccCCCchhhHhhhccCCCccEEEeecccCccccccccc
Q 006531 332 LEHLHIENCPSLTCIFSKNELPATLESLEVGNLPPSLKSLFVWDCPKLESIAERLDNNTSLETISIYNCENLKILPSGLH 411 (641)
Q Consensus 332 L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~ 411 (641)
|+.|+++++ .+...+| .+ ... .++|+.|++.+|.....+|..+..+++|+.|++++|.....+|..+.
T Consensus 358 L~~L~Ls~n-~l~~~~p-----~~-----~~~-~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~ 425 (968)
T PLN00113 358 LTVLDLSTN-NLTGEIP-----EG-----LCS-SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT 425 (968)
T ss_pred CcEEECCCC-eeEeeCC-----hh-----HhC-cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh
Confidence 444444442 2221111 11 001 13455555555444444444445555555555555533334444455
Q ss_pred CCCccceeeeccCCCccccCCCCCCCCCCcEEEeccccCCcccccccCCCCCccEEEEEcCCccCC-cC-CCCCCCcceE
Q 006531 412 NLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEALPKGLHNLTSLQHLAIIGGEFPSL-EE-DGLPTNLQSL 489 (641)
Q Consensus 412 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~l~~l-~~-~~~~~~L~~L 489 (641)
++++|+.|++++|.....++.....+++|+.|++++|...+.+|..+ ..++|+.|++++|.+... +. ...+++|++|
T Consensus 426 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L 504 (968)
T PLN00113 426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQL 504 (968)
T ss_pred cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEE
Confidence 55555555555544333333333344455555555554444444332 234555555555444321 11 1334455555
Q ss_pred EecccccchhhhcccccccccCCCccEEEEecCCCCcccccccccccCCCCCCCCCcceEeeccCCCcccccccccCCCC
Q 006531 490 RIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQN 569 (641)
Q Consensus 490 ~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~ 569 (641)
++++|.... .+|. .+..+++|++|++++| .-...+|... ..+++|+.|++++|.....+|..+..+++
T Consensus 505 ~Ls~N~l~~-~~p~---~~~~l~~L~~L~Ls~N-~l~~~~p~~~-------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 572 (968)
T PLN00113 505 KLSENKLSG-EIPD---ELSSCKKLVSLDLSHN-QLSGQIPASF-------SEMPVLSQLDLSQNQLSGEIPKNLGNVES 572 (968)
T ss_pred ECcCCccee-eCCh---HHcCccCCCEEECCCC-cccccCChhH-------hCcccCCEEECCCCcccccCChhHhcCcc
Confidence 555543321 2222 3445555555555553 2222222222 23345555555554333345555555555
Q ss_pred ccEEEecCCCCCcccCCCCcccccceEEecCCc
Q 006531 570 LTSLYLYDCPKLKYFPEKGLPSSLLQLDIYRCP 602 (641)
Q Consensus 570 L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~ 602 (641)
|+.+++++|+....+|..+....+....+.+|+
T Consensus 573 L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 573 LVQVNISHNHLHGSLPSTGAFLAINASAVAGNI 605 (968)
T ss_pred cCEEeccCCcceeeCCCcchhcccChhhhcCCc
Confidence 555555555544445543333333333344443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-35 Score=345.88 Aligned_cols=512 Identities=16% Similarity=0.113 Sum_probs=387.1
Q ss_pred CCccCCCCcEEEecccccccccccCcCCCCCCCCCCccEEEeccCcchhccCCC-CCCCeeEEEEecCCCc---cccCCC
Q 006531 16 SPIPFPCLETLCFENMQEWEDWIPHGSSQGVEEFPKLRELHILRCSKLQGAFPK-HLPALQMLVIRECEEL---SISITS 91 (641)
Q Consensus 16 ~~~~f~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~lp~-~~~~L~~L~l~~~~~~---~~~~~~ 91 (641)
++..+|+|+.|+++++.--..+.. ..+..+++|++|++++|.. .+.+|. .+++|++|++++|... ...+..
T Consensus 88 ~~~~l~~L~~L~Ls~n~~~~~ip~----~~~~~l~~L~~L~Ls~n~l-~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~ 162 (968)
T PLN00113 88 AIFRLPYIQTINLSNNQLSGPIPD----DIFTTSSSLRYLNLSNNNF-TGSIPRGSIPNLETLDLSNNMLSGEIPNDIGS 162 (968)
T ss_pred HHhCCCCCCEEECCCCccCCcCCh----HHhccCCCCCEEECcCCcc-ccccCccccCCCCEEECcCCcccccCChHHhc
Confidence 467899999999998742222221 3344789999999998854 346665 6789999999998643 255677
Q ss_pred hhhHHHH-HhcCcceeeecccccCCCCCceeecCCCccccccCCcCCCCCCcceEeecCcCCchhhhhcchHHhhcCCCC
Q 006531 92 LPALCKL-VSGCKKVVGRSATDHLGSQNSVVCRDTSNQVFLARPLKPRIPKLEELEINNIKNETDIWKSHNELLQDICSL 170 (641)
Q Consensus 92 ~~~L~~L-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L 170 (641)
+++|++| +++|.........+...+.+++++.............+..+++|++|++++|..... + +..+..+++|
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~---~-p~~l~~l~~L 238 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE---I-PYEIGGLTSL 238 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc---C-ChhHhcCCCC
Confidence 8899999 998876533222234556677777665544444556668899999999999865433 3 3456899999
Q ss_pred cEEEeccCCcccccccchhhhhhhhhhccCCCccEEEeccCcCccccccccCCCCCccEEEecCCCCCccCCC-ccCCCC
Q 006531 171 KRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVSFPE-VALPSK 249 (641)
Q Consensus 171 ~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~l~~-~~~l~~ 249 (641)
++|++++|.....+|.. +..+ ++|++|++++|...+.+|..+..+++|++|++++|.....+|. +..+++
T Consensus 239 ~~L~L~~n~l~~~~p~~-----l~~l----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 309 (968)
T PLN00113 239 NHLDLVYNNLTGPIPSS-----LGNL----KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN 309 (968)
T ss_pred CEEECcCceeccccChh-----HhCC----CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCC
Confidence 99999997654455543 6677 9999999999988778899999999999999999966556665 678999
Q ss_pred ccEEEccCCcCCccCChhhhhccCCCccEEEcccccCCcccccc-CCCCCCcEEecccCcccccccccccccccCCCccc
Q 006531 250 LKKIRISSCDALKSLPEEWMCDTNSSLEILYIEGCRSLTYIAAV-QLPSSLKKLQIHRCDNIRTLTVEEGIQCSSGRRYT 328 (641)
Q Consensus 250 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~ 328 (641)
|++|++++|.....+|..+... ++|+.|++++|.....+|.. +.+++|+.++++++.....+| ..+. .
T Consensus 310 L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p--~~~~-------~ 378 (968)
T PLN00113 310 LEILHLFSNNFTGKIPVALTSL--PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP--EGLC-------S 378 (968)
T ss_pred CcEEECCCCccCCcCChhHhcC--CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC--hhHh-------C
Confidence 9999999998766777766555 99999999998755555544 667899999999986544444 3222 2
Q ss_pred cccccccccccCCCcccccccCCCchhhhcccccCCCCCccEEEeccCCCchhhHhhhccCCCccEEEeecccCcccccc
Q 006531 329 SSLLEHLHIENCPSLTCIFSKNELPATLESLEVGNLPPSLKSLFVWDCPKLESIAERLDNNTSLETISIYNCENLKILPS 408 (641)
Q Consensus 329 ~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~ 408 (641)
.++|+.++++++ .+...+| .. .+.. ++|+.|++++|.....+|..+..+++|+.|++++|.....++.
T Consensus 379 ~~~L~~L~l~~n-~l~~~~p-----~~-----~~~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~ 446 (968)
T PLN00113 379 SGNLFKLILFSN-SLEGEIP-----KS-----LGAC-RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446 (968)
T ss_pred cCCCCEEECcCC-EecccCC-----HH-----HhCC-CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccCh
Confidence 446999999884 3433133 22 2222 7899999999887778888899999999999999976666777
Q ss_pred cccCCCccceeeeccCCCccccCCCCCCCCCCcEEEeccccCCcccccccCCCCCccEEEEEcCCccC-CcC-CCCCCCc
Q 006531 409 GLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEALPKGLHNLTSLQHLAIIGGEFPS-LEE-DGLPTNL 486 (641)
Q Consensus 409 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~l~~-l~~-~~~~~~L 486 (641)
.+..+++|+.|++++|.....+|... ..++|+.|++++|.....+|..+.++++|++|++++|.+.. +|. ...+++|
T Consensus 447 ~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 525 (968)
T PLN00113 447 RKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL 525 (968)
T ss_pred hhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCC
Confidence 78899999999999987776666543 45799999999999878888899999999999999988764 333 3678999
Q ss_pred ceEEecccccchhhhcccccccccCCCccEEEEecCCCCcccccccccccCCCCCCCCCcceEeeccCCCcccccccccC
Q 006531 487 QSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVD 566 (641)
Q Consensus 487 ~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 566 (641)
++|++++|.... .++. .+..+++|+.|++++| .-...+|... ..+++|+.+++++|+-...+|.. ..
T Consensus 526 ~~L~Ls~N~l~~-~~p~---~~~~l~~L~~L~Ls~N-~l~~~~p~~l-------~~l~~L~~l~ls~N~l~~~~p~~-~~ 592 (968)
T PLN00113 526 VSLDLSHNQLSG-QIPA---SFSEMPVLSQLDLSQN-QLSGEIPKNL-------GNVESLVQVNISHNHLHGSLPST-GA 592 (968)
T ss_pred CEEECCCCcccc-cCCh---hHhCcccCCEEECCCC-cccccCChhH-------hcCcccCEEeccCCcceeeCCCc-ch
Confidence 999999987543 4544 7889999999999995 4444667654 35679999999998766677753 44
Q ss_pred CCCccEEEecCCCCCc
Q 006531 567 LQNLTSLYLYDCPKLK 582 (641)
Q Consensus 567 l~~L~~L~l~~c~~l~ 582 (641)
+..+....+.+++.+.
T Consensus 593 ~~~~~~~~~~~n~~lc 608 (968)
T PLN00113 593 FLAINASAVAGNIDLC 608 (968)
T ss_pred hcccChhhhcCCcccc
Confidence 5555555666666554
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1.8e-23 Score=244.12 Aligned_cols=349 Identities=19% Similarity=0.300 Sum_probs=258.9
Q ss_pred ccCCcCCCCCCcceEeecCcC--C-chhhhhcchHHhhcC-CCCcEEEeccCCcccccccchhhhhhhhhhccCCCccEE
Q 006531 131 LARPLKPRIPKLEELEINNIK--N-ETDIWKSHNELLQDI-CSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYL 206 (641)
Q Consensus 131 ~~~~~~~~l~~L~~L~l~~~~--~-l~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L 206 (641)
....++..+.+|+.|.+.... . ....|.++.++ ..+ .+|+.|.+.++ .++.+|.. + .+.+|++|
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~-~~lp~~Lr~L~~~~~-~l~~lP~~-----f-----~~~~L~~L 616 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGF-DYLPPKLRLLRWDKY-PLRCMPSN-----F-----RPENLVKL 616 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcch-hhcCcccEEEEecCC-CCCCCCCc-----C-----CccCCcEE
Confidence 334456778889998885432 1 11112344433 444 46999999874 46666654 1 23789999
Q ss_pred EeccCcCccccccccCCCCCccEEEecCCCCCccCCCccCCCCccEEEccCCcCCccCChhhhhccCCCccEEEcccccC
Q 006531 207 RLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEEWMCDTNSSLEILYIEGCRS 286 (641)
Q Consensus 207 ~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 286 (641)
++.++.. ..++..+..+++|+.|++++|..+..+|.+..+++|++|++++|..+..+|..+... ++|+.|++++|..
T Consensus 617 ~L~~s~l-~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L--~~L~~L~L~~c~~ 693 (1153)
T PLN03210 617 QMQGSKL-EKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYL--NKLEDLDMSRCEN 693 (1153)
T ss_pred ECcCccc-cccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhcc--CCCCEEeCCCCCC
Confidence 9998864 778888888999999999998888888888889999999999998888888877665 8999999999988
Q ss_pred CccccccCCCCCCcEEecccCcccccccccccccccCCCccccccccccccccCCCcccccccCCCchhhhcccccCCCC
Q 006531 287 LTYIAAVQLPSSLKKLQIHRCDNIRTLTVEEGIQCSSGRRYTSSLLEHLHIENCPSLTCIFSKNELPATLESLEVGNLPP 366 (641)
Q Consensus 287 l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~ 366 (641)
++.+|....+++|+.|++++|..++.+| .. ..+|+.|++++ +.++. +|. ....+
T Consensus 694 L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p--~~----------~~nL~~L~L~~-n~i~~-lP~------------~~~l~ 747 (1153)
T PLN03210 694 LEILPTGINLKSLYRLNLSGCSRLKSFP--DI----------STNISWLDLDE-TAIEE-FPS------------NLRLE 747 (1153)
T ss_pred cCccCCcCCCCCCCEEeCCCCCCccccc--cc----------cCCcCeeecCC-Ccccc-ccc------------ccccc
Confidence 8888877678899999999998877766 22 23488888887 44555 541 11126
Q ss_pred CccEEEeccCCCc------hhh-HhhhccCCCccEEEeecccCcccccccccCCCccceeeeccCCCccccCCCCCCCCC
Q 006531 367 SLKSLFVWDCPKL------ESI-AERLDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAK 439 (641)
Q Consensus 367 ~L~~L~l~~~~~~------~~~-~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 439 (641)
+|++|.+.++... ..+ +.....+++|+.|++++|..+..+|..+.++++|+.|++++|..++.+|... .+++
T Consensus 748 ~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~s 826 (1153)
T PLN03210 748 NLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLES 826 (1153)
T ss_pred ccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Cccc
Confidence 7777777664321 011 1122335789999999998888888888999999999999998888888655 5778
Q ss_pred CcEEEeccccCCcccccccCCCCCccEEEEEcCCccCCcCC-CCCCCcceEEecccccchhhhcccccccccCCCccEEE
Q 006531 440 LTTLVICHCERLEALPKGLHNLTSLQHLAIIGGEFPSLEED-GLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELI 518 (641)
Q Consensus 440 L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~ 518 (641)
|+.|++++|..+..+|.. .++|++|+++++.+..+|.. ..+++|+.|++++|+.+.. ++. ....+++|+.++
T Consensus 827 L~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~-l~~---~~~~L~~L~~L~ 899 (1153)
T PLN03210 827 LESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR-VSL---NISKLKHLETVD 899 (1153)
T ss_pred cCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCc-cCc---ccccccCCCeee
Confidence 999999999888777653 36788999998888877653 6678999999999888773 444 567788999999
Q ss_pred EecCCCCcccc
Q 006531 519 IQGCDDDMVSF 529 (641)
Q Consensus 519 l~~c~~~~~~~ 529 (641)
+++| ..+..+
T Consensus 900 l~~C-~~L~~~ 909 (1153)
T PLN03210 900 FSDC-GALTEA 909 (1153)
T ss_pred cCCC-cccccc
Confidence 9988 655544
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=2e-23 Score=243.86 Aligned_cols=312 Identities=22% Similarity=0.340 Sum_probs=172.7
Q ss_pred CCccEEEeccCcCccccccccCCCCCccEEEecCCCCCccCCC-ccCCCCccEEEccCCcCCccCChhhhhccCCCccEE
Q 006531 201 CRLEYLRLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVSFPE-VALPSKLKKIRISSCDALKSLPEEWMCDTNSSLEIL 279 (641)
Q Consensus 201 ~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 279 (641)
++|+.|.+.++.. +.+|..+ ...+|+.|++.++ .+..++. +..+++|+.|++++|..+..+|. + ..+++|+.|
T Consensus 589 ~~Lr~L~~~~~~l-~~lP~~f-~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l--s~l~~Le~L 662 (1153)
T PLN03210 589 PKLRLLRWDKYPL-RCMPSNF-RPENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-L--SMATNLETL 662 (1153)
T ss_pred cccEEEEecCCCC-CCCCCcC-CccCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCc-c--ccCCcccEE
Confidence 3455555555543 4555444 3455555555554 2334433 34455555555555544444443 1 112555555
Q ss_pred EcccccCCcccccc-CCCCCCcEEecccCcccccccccccccccCCCccccccccccccccCCCcccccccCCCchhhhc
Q 006531 280 YIEGCRSLTYIAAV-QLPSSLKKLQIHRCDNIRTLTVEEGIQCSSGRRYTSSLLEHLHIENCPSLTCIFSKNELPATLES 358 (641)
Q Consensus 280 ~l~~~~~l~~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~ 358 (641)
++++|..+..+|.. +.+++|+.|++++|..++.+| ..+ .+++|+.|++++|..+
T Consensus 663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp--~~i--------~l~sL~~L~Lsgc~~L--------------- 717 (1153)
T PLN03210 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP--TGI--------NLKSLYRLNLSGCSRL--------------- 717 (1153)
T ss_pred EecCCCCccccchhhhccCCCCEEeCCCCCCcCccC--CcC--------CCCCCCEEeCCCCCCc---------------
Confidence 55555555444433 344455555555555554444 111 1223444555544444
Q ss_pred ccccCCCCCccEEEeccCCCchhhHhhhccCCCccEEEeecccCcccccccccCCCccceeeeccCCCcc------cc-C
Q 006531 359 LEVGNLPPSLKSLFVWDCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLV------SF-P 431 (641)
Q Consensus 359 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~------~l-~ 431 (641)
..+|.. .++|+.|+++++ .+..+|..+ .+++|++|.+.++.... .+ +
T Consensus 718 ---------------------~~~p~~---~~nL~~L~L~~n-~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~ 771 (1153)
T PLN03210 718 ---------------------KSFPDI---STNISWLDLDET-AIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTP 771 (1153)
T ss_pred ---------------------cccccc---cCCcCeeecCCC-ccccccccc-cccccccccccccchhhccccccccch
Confidence 333321 234444444444 233444322 34444444444322110 00 0
Q ss_pred CCCCCCCCCcEEEeccccCCcccccccCCCCCccEEEEEc-CCccCCcCCCCCCCcceEEecccccchhhhccccccccc
Q 006531 432 EGGLPCAKLTTLVICHCERLEALPKGLHNLTSLQHLAIIG-GEFPSLEEDGLPTNLQSLRIWGNMEIWKSMIERGRGFHR 510 (641)
Q Consensus 432 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 510 (641)
.....+++|+.|++++|..+..+|..++++++|+.|++++ +.+..+|....+++|+.|++++|..+. .++. .
T Consensus 772 ~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~-~~p~------~ 844 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLR-TFPD------I 844 (1153)
T ss_pred hhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccc-cccc------c
Confidence 0112235677777777777777777777777777777776 456666665567778888888776654 2222 2
Q ss_pred CCCccEEEEecCCCCcccccccccccCCCCCCCCCcceEeeccCCCcccccccccCCCCccEEEecCCCCCcccC
Q 006531 511 FSSLRELIIQGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTSLYLYDCPKLKYFP 585 (641)
Q Consensus 511 l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 585 (641)
.++|+.|++++ +.++.+|... ..+++|+.|++++|++++.+|..+..++.|+.+++++|..+..++
T Consensus 845 ~~nL~~L~Ls~--n~i~~iP~si-------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 845 STNISDLNLSR--TGIEEVPWWI-------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ccccCEeECCC--CCCccChHHH-------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 35778888877 5677777655 356678888888888888887777778888888888888777654
No 5
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=8.9e-27 Score=243.93 Aligned_cols=456 Identities=19% Similarity=0.179 Sum_probs=294.9
Q ss_pred eeEEEEecCCCcc---ccCCChhhHHHH-HhcCcceeeecccccCCCCCceeecCCCccccccCCcCCCCCCcceEeecC
Q 006531 74 LQMLVIRECEELS---ISITSLPALCKL-VSGCKKVVGRSATDHLGSQNSVVCRDTSNQVFLARPLKPRIPKLEELEINN 149 (641)
Q Consensus 74 L~~L~l~~~~~~~---~~~~~~~~L~~L-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 149 (641)
+..|++..+..+. ..+.+..+|+.| ++++....+|..+ ..+++|+.|+++.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~i-------------------------t~l~~L~~ln~s~ 77 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQI-------------------------TLLSHLRQLNLSR 77 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccccCCchh-------------------------hhHHHHhhcccch
Confidence 5556666555443 222223346666 6666665555443 5678888888887
Q ss_pred cCCchhhhhcchHHhhcCCCCcEEEeccCCcccccccchhhhhhhhhhccCCCccEEEeccCcCccccccccCCCCCccE
Q 006531 150 IKNETDIWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLCSLRE 229 (641)
Q Consensus 150 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~l~~L~~ 229 (641)
+. +.. .| ....++.+|++|.|. |+.+..+|.+ +..+ .+|++|++++|.. ..+|..+..+..++.
T Consensus 78 n~-i~~---vp-~s~~~~~~l~~lnL~-~n~l~~lP~~-----~~~l----knl~~LdlS~N~f-~~~Pl~i~~lt~~~~ 141 (1081)
T KOG0618|consen 78 NY-IRS---VP-SSCSNMRNLQYLNLK-NNRLQSLPAS-----ISEL----KNLQYLDLSFNHF-GPIPLVIEVLTAEEE 141 (1081)
T ss_pred hh-Hhh---Cc-hhhhhhhcchhheec-cchhhcCchh-----HHhh----hcccccccchhcc-CCCchhHHhhhHHHH
Confidence 53 222 44 445788999999998 4788888876 7788 9999999999977 788888888899999
Q ss_pred EEecCCCCCccCCCccCCCCccEEEccCCcCCccCChhhhhccCCCccEEEcccccCCccccccCCCCCCcEEecccCcc
Q 006531 230 IEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEEWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKKLQIHRCDN 309 (641)
Q Consensus 230 L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~ 309 (641)
+..++|..+..++..+ .+.+++..+.....++.++... .. .|+++++... .-....+++|+.+......
T Consensus 142 ~~~s~N~~~~~lg~~~----ik~~~l~~n~l~~~~~~~i~~l--~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~- 210 (1081)
T KOG0618|consen 142 LAASNNEKIQRLGQTS----IKKLDLRLNVLGGSFLIDIYNL--TH--QLDLRYNEME--VLDLSNLANLEVLHCERNQ- 210 (1081)
T ss_pred Hhhhcchhhhhhcccc----chhhhhhhhhcccchhcchhhh--he--eeecccchhh--hhhhhhccchhhhhhhhcc-
Confidence 9999885444444432 7777777776556666554333 22 4888886432 2222334445544443321
Q ss_pred cccccccccccccCCCccccccccccccccCCCcccccccCCCchhhhcccccCCCCCccEEEeccCCCchhhHhhhccC
Q 006531 310 IRTLTVEEGIQCSSGRRYTSSLLEHLHIENCPSLTCIFSKNELPATLESLEVGNLPPSLKSLFVWDCPKLESIAERLDNN 389 (641)
Q Consensus 310 l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 389 (641)
+..+ .+..++++.|+.++|.-.+- + ....|.+|++++++++ .+..+|.++..+
T Consensus 211 ls~l------------~~~g~~l~~L~a~~n~l~~~-~-------------~~p~p~nl~~~dis~n-~l~~lp~wi~~~ 263 (1081)
T KOG0618|consen 211 LSEL------------EISGPSLTALYADHNPLTTL-D-------------VHPVPLNLQYLDISHN-NLSNLPEWIGAC 263 (1081)
T ss_pred cceE------------EecCcchheeeeccCcceee-c-------------cccccccceeeecchh-hhhcchHHHHhc
Confidence 1111 12233477777766543321 1 3344578999999985 677788999999
Q ss_pred CCccEEEeecccCcccccccccCCCccceeeeccCCCccccCCCCCCCCCCcEEEeccccCCcccccc-cCCCCC-ccEE
Q 006531 390 TSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEALPKG-LHNLTS-LQHL 467 (641)
Q Consensus 390 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~l~~-L~~L 467 (641)
.+|+.+.+..| .+..+|..+....+|+.|.+.. +.++.+|....+..+|++|++..|. +..+|+. +..+.. |+.+
T Consensus 264 ~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~-nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~l 340 (1081)
T KOG0618|consen 264 ANLEALNANHN-RLVALPLRISRITSLVSLSAAY-NELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTL 340 (1081)
T ss_pred ccceEecccch-hHHhhHHHHhhhhhHHHHHhhh-hhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHH
Confidence 99999999988 6678888888888899988888 4688888877778889999998875 5556652 222222 5666
Q ss_pred EEEcCCccCCcCC--CCCCCcceEEecccccchhhhcccccccccCCCccEEEEecCCCCcccccccccccCCCCCCCCC
Q 006531 468 AIIGGEFPSLEED--GLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTALPLPAS 545 (641)
Q Consensus 468 ~l~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~ 545 (641)
+.+.+.+...+.. ...+.|+.|++.+|......+| .+.++.+|++|++++ +.+.+||...- ..++.
T Consensus 341 n~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p----~l~~~~hLKVLhLsy--NrL~~fpas~~------~kle~ 408 (1081)
T KOG0618|consen 341 NVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP----VLVNFKHLKVLHLSY--NRLNSFPASKL------RKLEE 408 (1081)
T ss_pred hhhhccccccccccchhhHHHHHHHHhcCcccccchh----hhccccceeeeeecc--cccccCCHHHH------hchHH
Confidence 6666665555433 2345666777766654444443 366666777777766 56666665431 34455
Q ss_pred cceEeeccC----------------------CCcccccccccCCCCccEEEecCCCCCcccCC-CCcc-cccceEEecCC
Q 006531 546 LTSLRIVDF----------------------PNLERLSSSIVDLQNLTSLYLYDCPKLKYFPE-KGLP-SSLLQLDIYRC 601 (641)
Q Consensus 546 L~~L~l~~~----------------------~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~-~~L~~L~l~~c 601 (641)
|++|+++++ +.+..+| .+..++.|++++++. +.++.+.. ...+ +.|++||+++|
T Consensus 409 LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 409 LEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred hHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCC
Confidence 666666652 3444444 556778888888885 55665433 3344 78888888888
Q ss_pred chhhhhhcccCccccccccccceEEEccE
Q 006531 602 PLMEEKCRKDGGQYWDLLTHIPFVRINFK 630 (641)
Q Consensus 602 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 630 (641)
+.+. -+.+..+.++++...+|+.+
T Consensus 487 ~~l~-----~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 487 TRLV-----FDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred cccc-----cchhhhHHhhhhhheecccC
Confidence 8632 24566677777777777765
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=3.1e-23 Score=206.75 Aligned_cols=219 Identities=18% Similarity=0.227 Sum_probs=163.1
Q ss_pred CCccEEEeccCCCchhh-HhhhccCCCccEEEeecccCcccccc-cccCCCccceeeeccCCCccccCC-CCCCCCCCcE
Q 006531 366 PSLKSLFVWDCPKLESI-AERLDNNTSLETISIYNCENLKILPS-GLHNLRQLRGITIQSCANLVSFPE-GGLPCAKLTT 442 (641)
Q Consensus 366 ~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~ 442 (641)
++|+.|++..| .++.+ .-.+.++++|+.|.+.+| .+..+.. .|-+|.++++|++..| .+..+.. ....+.+|+.
T Consensus 221 ~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~ 297 (873)
T KOG4194|consen 221 PKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQ 297 (873)
T ss_pred chhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeecccc-hhhhhhcccccccchhhh
Confidence 78888888885 44433 455788899999999988 4555443 4788999999999984 5555554 4457889999
Q ss_pred EEeccccCCcccccccCCCCCccEEEEEcCCccCCcCCC--CCCCcceEEecccccchhhhcccccccccCCCccEEEEe
Q 006531 443 LVICHCERLEALPKGLHNLTSLQHLAIIGGEFPSLEEDG--LPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQ 520 (641)
Q Consensus 443 L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 520 (641)
|++++|..-..-++++..+++|++|+|++|.++.+++.. .+..|++|.+++|... .+.+ ..|..+.+|++|+++
T Consensus 298 L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~--~l~e--~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 298 LDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID--HLAE--GAFVGLSSLHKLDLR 373 (873)
T ss_pred hccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH--HHHh--hHHHHhhhhhhhcCc
Confidence 999998866666788899999999999999998886653 3688999999987643 3333 578889999999999
Q ss_pred cCCCCcccccccccccCCCCCCCCCcceEeeccCCCcccccc-cccCCCCccEEEecCCCCCcccCCCCc-ccccceEEe
Q 006531 521 GCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTSLYLYDCPKLKYFPEKGL-PSSLLQLDI 598 (641)
Q Consensus 521 ~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~l 598 (641)
. +.+...-+. -+.++.-+++|++|++.+ +++++||. .+..+++|+.|++.+ +.+.+|....+ ...|++|.+
T Consensus 374 ~--N~ls~~IED---aa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~nAFe~m~Lk~Lv~ 446 (873)
T KOG4194|consen 374 S--NELSWCIED---AAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIASIQPNAFEPMELKELVM 446 (873)
T ss_pred C--CeEEEEEec---chhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCC-Ccceeecccccccchhhhhhh
Confidence 8 444332222 123444578999999999 79999987 568899999999999 45676655444 235666643
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=1.4e-25 Score=214.08 Aligned_cols=369 Identities=21% Similarity=0.223 Sum_probs=222.8
Q ss_pred CCCCCcceEeecCcCCchhhhhcchHHhhcCCCCcEEEeccCCcccccccchhhhhhhhhhccCCCccEEEeccCcCccc
Q 006531 137 PRIPKLEELEINNIKNETDIWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVK 216 (641)
Q Consensus 137 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~ 216 (641)
.++.+|..|++.++.. +. .++.... |+.|++|+... +.++.+|++ ++.+ .+|.-|++..|.. ..
T Consensus 157 ~~~~~l~~l~~~~n~l-~~---l~~~~i~-m~~L~~ld~~~-N~L~tlP~~-----lg~l----~~L~~LyL~~Nki-~~ 220 (565)
T KOG0472|consen 157 VNLSKLSKLDLEGNKL-KA---LPENHIA-MKRLKHLDCNS-NLLETLPPE-----LGGL----ESLELLYLRRNKI-RF 220 (565)
T ss_pred HHHHHHHHhhccccch-hh---CCHHHHH-HHHHHhcccch-hhhhcCChh-----hcch----hhhHHHHhhhccc-cc
Confidence 5677777777777643 33 4555444 77788887765 466777766 6666 7777777777765 56
Q ss_pred cccccCCCCCccEEEecCCCCCccCCC--ccCCCCccEEEccCCcCCccCChhhhhccCCCccEEEcccccCCcccccc-
Q 006531 217 LPQSSLSLCSLREIEICKCSSLVSFPE--VALPSKLKKIRISSCDALKSLPEEWMCDTNSSLEILYIEGCRSLTYIAAV- 293 (641)
Q Consensus 217 l~~~~~~l~~L~~L~L~~~~~l~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~- 293 (641)
+| .|..|..|++|++..| .+..+|. ...++++.+|+++.|. ++++|.++... .+|+.||++++ .++..|..
T Consensus 221 lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clL--rsL~rLDlSNN-~is~Lp~sL 294 (565)
T KOG0472|consen 221 LP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLL--RSLERLDLSNN-DISSLPYSL 294 (565)
T ss_pred CC-CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeeccccc-cccCchHHHHh--hhhhhhcccCC-ccccCCccc
Confidence 66 5777777888877665 5666665 3467788888888865 77888877666 77888888775 35555554
Q ss_pred CCCCCCcEEecccCcccccccccccccccCCCcccccccccccc-ccCCCcccc---------cccCCCchhhhcccccC
Q 006531 294 QLPSSLKKLQIHRCDNIRTLTVEEGIQCSSGRRYTSSLLEHLHI-ENCPSLTCI---------FSKNELPATLESLEVGN 363 (641)
Q Consensus 294 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l-~~c~~l~~~---------~~~~~~~~~l~~~~~~~ 363 (641)
+.+ .|+.+.+.+.+.-+ +- ..+.. .|. ..-|++|.= ..|..+... .+...+++ ...
T Consensus 295 gnl-hL~~L~leGNPlrT-iR--r~ii~-~gT---~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~------~~~ 360 (565)
T KOG0472|consen 295 GNL-HLKFLALEGNPLRT-IR--REIIS-KGT---QEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPD------IYA 360 (565)
T ss_pred ccc-eeeehhhcCCchHH-HH--HHHHc-ccH---HHHHHHHHHhhccCCCCCCcccccccCCCCCCcccc------hhh
Confidence 445 67777777654211 10 00000 000 000333321 001111110 00000111 001
Q ss_pred CCCCccEEEeccCCCchhhHhhhccCC---CccEEEeecccCcccccccccCCCccceeeeccCCCccccCCCCCCCCCC
Q 006531 364 LPPSLKSLFVWDCPKLESIAERLDNNT---SLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKL 440 (641)
Q Consensus 364 ~~~~L~~L~l~~~~~~~~~~~~l~~l~---~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L 440 (641)
.-..+.|++++ ..+..+|.....-. -.+..+++.| .+..+|..+..++.+.+.-+..++.+..+|.....+++|
T Consensus 361 -~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskN-qL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kL 437 (565)
T KOG0472|consen 361 -IITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKN-QLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKL 437 (565)
T ss_pred -hhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccc-hHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcc
Confidence 13566777776 35566665433222 3778888888 677788877777777666555556777777777778888
Q ss_pred cEEEeccccCCcccccccCCCCCccEEEEEcCCccCCcCCCCCCCcceEEecccccchhhhcccccccccCCCccEEEEe
Q 006531 441 TTLVICHCERLEALPKGLHNLTSLQHLAIIGGEFPSLEEDGLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQ 520 (641)
Q Consensus 441 ~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 520 (641)
..|++++|. +..+|..++.+..|+.++++.|.+..+|.... -+..++.+-.+
T Consensus 438 t~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y---------------------------~lq~lEtllas 489 (565)
T KOG0472|consen 438 TFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFNRFRMLPECLY---------------------------ELQTLETLLAS 489 (565)
T ss_pred eeeecccch-hhhcchhhhhhhhhheecccccccccchHHHh---------------------------hHHHHHHHHhc
Confidence 888887764 77788888888888888888887776654311 12222222222
Q ss_pred cCCCCcccccccccccCCCCCCCCCcceEeeccCCCcccccccccCCCCccEEEecCCCCC
Q 006531 521 GCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTSLYLYDCPKL 581 (641)
Q Consensus 521 ~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 581 (641)
+ +++..++... +..+.+|..|++.+ +.+..+|+.++++.+|++|++.+|+.-
T Consensus 490 ~--nqi~~vd~~~------l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 490 N--NQIGSVDPSG------LKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred c--ccccccChHH------hhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCccC
Confidence 2 4444444431 12445666666666 577777877788888888888887653
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=1.1e-24 Score=228.47 Aligned_cols=325 Identities=21% Similarity=0.220 Sum_probs=198.6
Q ss_pred ccEEEeccCcCccccccccCCCCCccEEEecCCCCCccCCCccCCCCccEEEccCCcCCccCChhhhhccCCCccEEEcc
Q 006531 203 LEYLRLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEEWMCDTNSSLEILYIE 282 (641)
Q Consensus 203 L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 282 (641)
++.+++..+.....++..+..+.+ .|++++|... ......+++|+.|....+. +..+.. .. ++|+.|+.+
T Consensus 158 ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~-ls~l~~---~g--~~l~~L~a~ 227 (1081)
T KOG0618|consen 158 IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQ-LSELEI---SG--PSLTALYAD 227 (1081)
T ss_pred chhhhhhhhhcccchhcchhhhhe--eeecccchhh--hhhhhhccchhhhhhhhcc-cceEEe---cC--cchheeeec
Confidence 666666666665666666665555 5777776433 3334456667776666554 333221 11 667777777
Q ss_pred cccCCccccccCCCCCCcEEecccCcccccccccccccccCCCccccccccccccccCCCcccccccCCCchhhhccccc
Q 006531 283 GCRSLTYIAAVQLPSSLKKLQIHRCDNIRTLTVEEGIQCSSGRRYTSSLLEHLHIENCPSLTCIFSKNELPATLESLEVG 362 (641)
Q Consensus 283 ~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~ 362 (641)
.|+.. .......+.+++++++++. .+..+| +++.. +.+|+.+...+ ++++. +|.. ..
T Consensus 228 ~n~l~-~~~~~p~p~nl~~~dis~n-~l~~lp--~wi~~-------~~nle~l~~n~-N~l~~-lp~r----------i~ 284 (1081)
T KOG0618|consen 228 HNPLT-TLDVHPVPLNLQYLDISHN-NLSNLP--EWIGA-------CANLEALNANH-NRLVA-LPLR----------IS 284 (1081)
T ss_pred cCcce-eeccccccccceeeecchh-hhhcch--HHHHh-------cccceEecccc-hhHHh-hHHH----------Hh
Confidence 66533 2222344556666666663 334444 33332 33455555544 34433 2210 00
Q ss_pred CCCCCccEEEeccCCCchhhHhhhccCCCccEEEeecccCcccccccccC-CC-ccceeeeccCCCccccCC-CCCCCCC
Q 006531 363 NLPPSLKSLFVWDCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHN-LR-QLRGITIQSCANLVSFPE-GGLPCAK 439 (641)
Q Consensus 363 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~-l~-~L~~L~l~~c~~l~~l~~-~~~~~~~ 439 (641)
.. .+|++|.+..| .++.+|.....+.+|++|++..| .+.++|..+.. .. .|+.|..+. ..+...|. +....+.
T Consensus 285 ~~-~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~ 360 (1081)
T KOG0618|consen 285 RI-TSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAA 360 (1081)
T ss_pred hh-hhHHHHHhhhh-hhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHH
Confidence 11 45555555553 45555555555666666666666 55555542211 11 134444433 23333332 2233557
Q ss_pred CcEEEeccccCCcccccccCCCCCccEEEEEcCCccCCcCC--CCCCCcceEEecccccchhhhcccccccccCCCccEE
Q 006531 440 LTTLVICHCERLEALPKGLHNLTSLQHLAIIGGEFPSLEED--GLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLREL 517 (641)
Q Consensus 440 L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L 517 (641)
|+.|++.+|..-...-+.+.+++.|+.|++++|++..+|+. ..++.|++|++++|... .+++ .+..++.|++|
T Consensus 361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~--~Lp~---tva~~~~L~tL 435 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT--TLPD---TVANLGRLHTL 435 (1081)
T ss_pred HHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh--hhhH---HHHhhhhhHHH
Confidence 88888888876655555688899999999999999988875 56789999999998644 3444 67889999999
Q ss_pred EEecCCCCcccccccccccCCCCCCCCCcceEeeccCCCcccccccc-cCCCCccEEEecCCCC
Q 006531 518 IIQGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSI-VDLQNLTSLYLYDCPK 580 (641)
Q Consensus 518 ~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~ 580 (641)
..-. +.+..||+.. ..++|+.+|++. +++..+.... ...|+|++|++++|..
T Consensus 436 ~ahs--N~l~~fPe~~--------~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 436 RAHS--NQLLSFPELA--------QLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhcC--Cceeechhhh--------hcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 8755 8999999554 778999999998 6887542211 2238999999999875
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=8.8e-24 Score=211.98 Aligned_cols=365 Identities=20% Similarity=0.280 Sum_probs=231.6
Q ss_pred CCCCCcceEeecCcCCchhhhhcchHHhhcCCCCcEEEeccCCcccccccchhhhhhhhhhccCCCccEEEeccCcCccc
Q 006531 137 PRIPKLEELEINNIKNETDIWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVK 216 (641)
Q Consensus 137 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~ 216 (641)
+.+|-.+-.+++++..-.. -.+.....|+.++.|.+.. ..+..+|.+ ++.+ .+|++|++.+|+. ..
T Consensus 4 gVLpFVrGvDfsgNDFsg~---~FP~~v~qMt~~~WLkLnr-t~L~~vPeE-----L~~l----qkLEHLs~~HN~L-~~ 69 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGD---RFPHDVEQMTQMTWLKLNR-TKLEQVPEE-----LSRL----QKLEHLSMAHNQL-IS 69 (1255)
T ss_pred cccceeecccccCCcCCCC---cCchhHHHhhheeEEEech-hhhhhChHH-----HHHH----hhhhhhhhhhhhh-Hh
Confidence 3466677778888765544 4445567889999999987 778888876 7777 8999999998875 56
Q ss_pred cccccCCCCCccEEEecCCCC-CccCCC-ccCCCCccEEEccCCcCCccCChhhhhccCCCccEEEcccccCCcccccc-
Q 006531 217 LPQSSLSLCSLREIEICKCSS-LVSFPE-VALPSKLKKIRISSCDALKSLPEEWMCDTNSSLEILYIEGCRSLTYIAAV- 293 (641)
Q Consensus 217 l~~~~~~l~~L~~L~L~~~~~-l~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~- 293 (641)
+.-.+..++.|+.+.+..|.. -..+|+ +..+..|..|++++|. +.++|...-.. .++-.|+++++ .++.+|..
T Consensus 70 vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~A--Kn~iVLNLS~N-~IetIPn~l 145 (1255)
T KOG0444|consen 70 VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYA--KNSIVLNLSYN-NIETIPNSL 145 (1255)
T ss_pred hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhh--cCcEEEEcccC-ccccCCchH
Confidence 666778888999999888752 234555 7778899999999976 88888876655 78888898885 46666644
Q ss_pred -CCCCCCcEEecccCcccccccccccccccCCCccccccccccccccCCCcccccccCCCchhhhcccccCCCCCccEEE
Q 006531 294 -QLPSSLKKLQIHRCDNIRTLTVEEGIQCSSGRRYTSSLLEHLHIENCPSLTCIFSKNELPATLESLEVGNLPPSLKSLF 372 (641)
Q Consensus 294 -~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~L~~L~ 372 (641)
..+..|-.|++++. .++.+| ..+.. +..|++|.+++. -+.. |.-.. ... .++|+.|+
T Consensus 146 finLtDLLfLDLS~N-rLe~LP--PQ~RR-------L~~LqtL~Ls~N-PL~h-fQLrQ---------LPs-mtsL~vLh 203 (1255)
T KOG0444|consen 146 FINLTDLLFLDLSNN-RLEMLP--PQIRR-------LSMLQTLKLSNN-PLNH-FQLRQ---------LPS-MTSLSVLH 203 (1255)
T ss_pred HHhhHhHhhhccccc-hhhhcC--HHHHH-------HhhhhhhhcCCC-hhhH-HHHhc---------Ccc-chhhhhhh
Confidence 34455666777764 455565 43332 334777777763 2222 22111 111 15666667
Q ss_pred eccCCC-chhhHhhhccCCCccEEEeecccCcccccccccCCCccceeeeccCCCccccCCCCCCCCCCcEEEeccccCC
Q 006531 373 VWDCPK-LESIAERLDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERL 451 (641)
Q Consensus 373 l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l 451 (641)
+++.+. +..+|..+..+.+|..++++.| .+..+|.++-.+++|+.|++++ +.++.+........+|++|+++.|+ +
T Consensus 204 ms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSrNQ-L 280 (1255)
T KOG0444|consen 204 MSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSRNQ-L 280 (1255)
T ss_pred cccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhccccch-h
Confidence 766544 3566777777777777777777 6777777777777777777777 4555555544445567777777765 6
Q ss_pred cccccccCCCCCccEEEEEcCCcc--CCcC-CCCCCCcceEEecccccchhhhcccccccccCCCccEEEEecCCCCccc
Q 006531 452 EALPKGLHNLTSLQHLAIIGGEFP--SLEE-DGLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVS 528 (641)
Q Consensus 452 ~~~~~~~~~l~~L~~L~l~~~~l~--~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~~~~~ 528 (641)
+.+|..+.++++|+.|++.+|.+. .+|. ++.+.+|+++..++|..- -.|. .+..|+.|+.|.+.. +.+..
T Consensus 281 t~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE--lVPE---glcRC~kL~kL~L~~--NrLiT 353 (1255)
T KOG0444|consen 281 TVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE--LVPE---GLCRCVKLQKLKLDH--NRLIT 353 (1255)
T ss_pred ccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc--cCch---hhhhhHHHHHhcccc--cceee
Confidence 667777777777777777665443 2222 244455555555544221 2222 445555555555544 45555
Q ss_pred ccccccccCCCCCCCCCcceEeeccCCCcc
Q 006531 529 FPLEDKRLGTALPLPASLTSLRIVDFPNLE 558 (641)
Q Consensus 529 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 558 (641)
+|+.+ .+++.|+.|++..++++.
T Consensus 354 LPeaI-------HlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 354 LPEAI-------HLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred chhhh-------hhcCCcceeeccCCcCcc
Confidence 55544 344555555555555444
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=1.7e-22 Score=201.61 Aligned_cols=197 Identities=18% Similarity=0.231 Sum_probs=89.1
Q ss_pred CCccEEEeccCCCchhhHhhhccCCCccEEEeecccCccccc-ccccCCCccceeeeccCCCcccc-CCCCCCCCCCcEE
Q 006531 366 PSLKSLFVWDCPKLESIAERLDNNTSLETISIYNCENLKILP-SGLHNLRQLRGITIQSCANLVSF-PEGGLPCAKLTTL 443 (641)
Q Consensus 366 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L 443 (641)
++|+.|.+..|....--...+..+.++++|+++.| .+..+. .++-++..|+.|++++| .++.+ +.++.-+++|+.|
T Consensus 245 ~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~L 322 (873)
T KOG4194|consen 245 PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKEL 322 (873)
T ss_pred hhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchh-hhheeecchhhhcccceeE
Confidence 44555555543222211223444555555555555 333322 23445555555555553 23322 2233334555555
Q ss_pred EeccccCCcccc-cccCCCCCccEEEEEcCCccCCcCC--CCCCCcceEEecccccchhhhcccccccccCCCccEEEEe
Q 006531 444 VICHCERLEALP-KGLHNLTSLQHLAIIGGEFPSLEED--GLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQ 520 (641)
Q Consensus 444 ~l~~c~~l~~~~-~~~~~l~~L~~L~l~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 520 (641)
++++|. ++.++ ..+..+..|++|+|+.|.+..+.+. ..+++|++|+++.|.... .+.+.+..+..++.|+.|++.
T Consensus 323 dLs~N~-i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~-~IEDaa~~f~gl~~LrkL~l~ 400 (873)
T KOG4194|consen 323 DLSSNR-ITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW-CIEDAAVAFNGLPSLRKLRLT 400 (873)
T ss_pred eccccc-cccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE-EEecchhhhccchhhhheeec
Confidence 555544 33332 2445555555555555555544332 234555555555543221 222222345555555555555
Q ss_pred cCCCCcccccccccccCCCCCCCCCcceEeeccCCCcccc-cccccCCCCccEEEec
Q 006531 521 GCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERL-SSSIVDLQNLTSLYLY 576 (641)
Q Consensus 521 ~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~ 576 (641)
+ +++..++.-.. .-++.|++|++.+ +.+.+| +..|..+ .|+.|.+.
T Consensus 401 g--Nqlk~I~krAf------sgl~~LE~LdL~~-NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 401 G--NQLKSIPKRAF------SGLEALEHLDLGD-NAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred C--ceeeecchhhh------ccCcccceecCCC-Ccceeecccccccc-hhhhhhhc
Confidence 5 45555554321 2334555555555 233433 2233333 44544443
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.9e-23 Score=209.69 Aligned_cols=364 Identities=16% Similarity=0.211 Sum_probs=218.2
Q ss_pred CCCCcEEEeccCCcc-cccccchhhhhhhhhhccCCCccEEEeccCcCccccccccCCCCCccEEEecCCCCCccCCCcc
Q 006531 167 ICSLKRLTIDSCPKL-QSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVSFPEVA 245 (641)
Q Consensus 167 ~~~L~~L~l~~c~~l-~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~ 245 (641)
++-.|-+++++++.- ..+|.. ..+. ++++-|.|..... ..+|+.++.+.+|++|.+++|........+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~-----v~qM----t~~~WLkLnrt~L-~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs 75 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHD-----VEQM----TQMTWLKLNRTKL-EQVPEELSRLQKLEHLSMAHNQLISVHGELS 75 (1255)
T ss_pred cceeecccccCCcCCCCcCchh-----HHHh----hheeEEEechhhh-hhChHHHHHHhhhhhhhhhhhhhHhhhhhhc
Confidence 344556677775544 233333 5555 8888888888755 8888888889999999998886554444566
Q ss_pred CCCCccEEEccCCc-CCccCChhhhhccCCCccEEEcccccCCcccccc-CCCCCCcEEecccCcccccccccccccccC
Q 006531 246 LPSKLKKIRISSCD-ALKSLPEEWMCDTNSSLEILYIEGCRSLTYIAAV-QLPSSLKKLQIHRCDNIRTLTVEEGIQCSS 323 (641)
Q Consensus 246 ~l~~L~~L~l~~~~-~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~ 323 (641)
.+|.|+.+.+..|. .-..+|.+++.. ..|..||++++ .++..|.. ....++-+|++++. +++.+| ..+.-
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l--~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N-~IetIP--n~lfi-- 147 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRL--KDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYN-NIETIP--NSLFI-- 147 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhccc--ccceeeecchh-hhhhcchhhhhhcCcEEEEcccC-ccccCC--chHHH--
Confidence 78888888888765 224477777766 78888888885 35555544 44456666677663 445455 22111
Q ss_pred CCccccccccccccccCCCcccccccCCCchhhhcccccCCCCCccEEEeccCCCchhhHhhhccCCCccEEEeecccCc
Q 006531 324 GRRYTSSLLEHLHIENCPSLTCIFSKNELPATLESLEVGNLPPSLKSLFVWDCPKLESIAERLDNNTSLETISIYNCENL 403 (641)
Q Consensus 324 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 403 (641)
.+ ..|-.|++++ +.++.+|+.+..+..|++|.+++|...
T Consensus 148 ----nL------------------------------------tDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 148 ----NL------------------------------------TDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred ----hh------------------------------------HhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhh
Confidence 11 2344555555 345555555555566666666655321
Q ss_pred ccccccccCCCccceeeeccCC-CccccCCCCCCCCCCcEEEeccccCCcccccccCCCCCccEEEEEcCCccCCcCC-C
Q 006531 404 KILPSGLHNLRQLRGITIQSCA-NLVSFPEGGLPCAKLTTLVICHCERLEALPKGLHNLTSLQHLAIIGGEFPSLEED-G 481 (641)
Q Consensus 404 ~~l~~~~~~l~~L~~L~l~~c~-~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-~ 481 (641)
----.-+..+++|+.|.+++.+ .+..+|...-.+.+|..++++.|. +..+|..+.++++|+.|++++|.++.+... +
T Consensus 187 hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~ 265 (1255)
T KOG0444|consen 187 HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKITELNMTEG 265 (1255)
T ss_pred HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCceeeeeccHH
Confidence 1100112234455555555532 233455555555566666665443 555666666666666666666666654322 4
Q ss_pred CCCCcceEEecccccchhhhcccccccccCCCccEEEEecCCCCcccccccccccCCCCCCCCCcceEeeccCCCccccc
Q 006531 482 LPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLS 561 (641)
Q Consensus 482 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 561 (641)
.+.+|++|+++.|... .+|. ++.+++.|+.|.+.++--..+.+|.+++ .+.+|+.+...+ ++++-+|
T Consensus 266 ~W~~lEtLNlSrNQLt--~LP~---avcKL~kL~kLy~n~NkL~FeGiPSGIG-------KL~~Levf~aan-N~LElVP 332 (1255)
T KOG0444|consen 266 EWENLETLNLSRNQLT--VLPD---AVCKLTKLTKLYANNNKLTFEGIPSGIG-------KLIQLEVFHAAN-NKLELVP 332 (1255)
T ss_pred HHhhhhhhccccchhc--cchH---HHhhhHHHHHHHhccCcccccCCccchh-------hhhhhHHHHhhc-cccccCc
Confidence 4566667777665433 3443 5666777777766654334556666653 555666666666 5666667
Q ss_pred ccccCCCCccEEEecCCCCCcccCC-CCcccccceEEecCCchh
Q 006531 562 SSIVDLQNLTSLYLYDCPKLKYFPE-KGLPSSLLQLDIYRCPLM 604 (641)
Q Consensus 562 ~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~L~~L~l~~c~~l 604 (641)
.++..|+.|+.|.++. +.+.++|+ ..+++.|+.|++++||.+
T Consensus 333 EglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 333 EGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCc
Confidence 7777777777777765 44555665 355667777777777754
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=3.1e-23 Score=198.05 Aligned_cols=402 Identities=22% Similarity=0.252 Sum_probs=244.0
Q ss_pred CCCCCcceEeecCcCCchhhhhcchHHhhcCCCCcEEEeccCCcccccccchhhhhhhhhhccCCCccEEEeccCcCccc
Q 006531 137 PRIPKLEELEINNIKNETDIWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVK 216 (641)
Q Consensus 137 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~ 216 (641)
.++..|.+|++.++.-.+ .|+ +.+.+..++.++.+. +++..+|.. +..+ ++|+.++++.+.. ..
T Consensus 65 ~nL~~l~vl~~~~n~l~~----lp~-aig~l~~l~~l~vs~-n~ls~lp~~-----i~s~----~~l~~l~~s~n~~-~e 128 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLSQ----LPA-AIGELEALKSLNVSH-NKLSELPEQ-----IGSL----ISLVKLDCSSNEL-KE 128 (565)
T ss_pred hcccceeEEEeccchhhh----CCH-HHHHHHHHHHhhccc-chHhhccHH-----Hhhh----hhhhhhhccccce-ee
Confidence 567777777777765433 333 346677777777776 566666655 5666 7777777777755 67
Q ss_pred cccccCCCCCccEEEecCCCCCccCCC-ccCCCCccEEEccCCcCCccCChhhhhccCCCccEEEcccccCCcccccc-C
Q 006531 217 LPQSSLSLCSLREIEICKCSSLVSFPE-VALPSKLKKIRISSCDALKSLPEEWMCDTNSSLEILYIEGCRSLTYIAAV-Q 294 (641)
Q Consensus 217 l~~~~~~l~~L~~L~L~~~~~l~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~ 294 (641)
+|+.++.+..|+.++..+| .+.++|. ++.+.+|..+++.++. +...|...... ..|++||...+ -++.+|.. +
T Consensus 129 l~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m--~~L~~ld~~~N-~L~tlP~~lg 203 (565)
T KOG0472|consen 129 LPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAM--KRLKHLDCNSN-LLETLPPELG 203 (565)
T ss_pred cCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHH--HHHHhcccchh-hhhcCChhhc
Confidence 7777777777777777766 4555554 6677777777777765 66666655554 67777776553 35555554 6
Q ss_pred CCCCCcEEecccCcccccccccccccccCCCccccccccccccccCCCcccccccCCCchhhhcccccCCCCCccEEEec
Q 006531 295 LPSSLKKLQIHRCDNIRTLTVEEGIQCSSGRRYTSSLLEHLHIENCPSLTCIFSKNELPATLESLEVGNLPPSLKSLFVW 374 (641)
Q Consensus 295 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~ 374 (641)
.+.+|+.+++... ++..+|. .-.+..|.+++++. ++++. +|+. ...-.+.+..|++.
T Consensus 204 ~l~~L~~LyL~~N-ki~~lPe----------f~gcs~L~Elh~g~-N~i~~-lpae----------~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 204 GLESLELLYLRRN-KIRFLPE----------FPGCSLLKELHVGE-NQIEM-LPAE----------HLKHLNSLLVLDLR 260 (565)
T ss_pred chhhhHHHHhhhc-ccccCCC----------CCccHHHHHHHhcc-cHHHh-hHHH----------Hhcccccceeeecc
Confidence 6667777776663 3444441 11233366666655 44444 3311 11112678888888
Q ss_pred cCCCchhhHhhhccCCCccEEEeecccCcccccccccCCCccceeeeccCCCccccC-----------------------
Q 006531 375 DCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFP----------------------- 431 (641)
Q Consensus 375 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~----------------------- 431 (641)
++ .++++|..+..+.+|+.||+++| .+..+|..++++ .|+.|.+.|++. +.+.
T Consensus 261 dN-klke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNPl-rTiRr~ii~~gT~~vLKyLrs~~~~dg 336 (565)
T KOG0472|consen 261 DN-KLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNPL-RTIRREIISKGTQEVLKYLRSKIKDDG 336 (565)
T ss_pred cc-ccccCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCch-HHHHHHHHcccHHHHHHHHHHhhccCC
Confidence 84 67778888888888888888877 677788888887 788887776531 1100
Q ss_pred ---------------C----CCCCCCCCcEEEeccccCCcccccccCCCC---CccEEEEEcCCccCCcC----------
Q 006531 432 ---------------E----GGLPCAKLTTLVICHCERLEALPKGLHNLT---SLQHLAIIGGEFPSLEE---------- 479 (641)
Q Consensus 432 ---------------~----~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~---~L~~L~l~~~~l~~l~~---------- 479 (641)
. ......+.+.|++++- .++.+|..+..-. -....+++.|++..+|.
T Consensus 337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT 415 (565)
T KOG0472|consen 337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVT 415 (565)
T ss_pred CCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHH
Confidence 0 0001123444555442 2444554221111 13344444444443332
Q ss_pred --------------C-CCCCCcceEEecccccchhhhcccccccccCCCccEEEEecCCCCcccccccccccCCCCCCCC
Q 006531 480 --------------D-GLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTALPLPA 544 (641)
Q Consensus 480 --------------~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~ 544 (641)
. ..+++|..|++++|..- .+|. .++.+..||.|+++. +.+..+|.... .+.
T Consensus 416 ~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln--~LP~---e~~~lv~Lq~LnlS~--NrFr~lP~~~y-------~lq 481 (565)
T KOG0472|consen 416 DLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN--DLPE---EMGSLVRLQTLNLSF--NRFRMLPECLY-------ELQ 481 (565)
T ss_pred HHHhhcCccccchHHHHhhhcceeeecccchhh--hcch---hhhhhhhhheecccc--cccccchHHHh-------hHH
Confidence 1 23466777777665321 3333 455666677777776 56666665441 233
Q ss_pred CcceEeeccCCCccccccc-ccCCCCccEEEecCCCCCcccCC-CCcccccceEEecCCch
Q 006531 545 SLTSLRIVDFPNLERLSSS-IVDLQNLTSLYLYDCPKLKYFPE-KGLPSSLLQLDIYRCPL 603 (641)
Q Consensus 545 ~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~L~~L~l~~c~~ 603 (641)
.++.+-.++ +.++.++.. +..+.+|++|++.+ +.+..+|. .+-+++|+.|++++||.
T Consensus 482 ~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 482 TLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred HHHHHHhcc-ccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCcc
Confidence 344444444 577777665 78899999999998 56777766 46689999999999985
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=2.4e-14 Score=156.02 Aligned_cols=257 Identities=28% Similarity=0.418 Sum_probs=137.8
Q ss_pred CccEEEecCCCCCccCCCccCCCCccEEEccCCcCCccCChhhhhccCCCccEEEcccccCCccccccCCCCCCcEEecc
Q 006531 226 SLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEEWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKKLQIH 305 (641)
Q Consensus 226 ~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~ 305 (641)
+-..|+++++ .++.+|. ...++|+.|++.+|. ++.+|.. .++|++|++++| .++.+|. .+++|+.|+++
T Consensus 202 ~~~~LdLs~~-~LtsLP~-~l~~~L~~L~L~~N~-Lt~LP~l-----p~~Lk~LdLs~N-~LtsLP~--lp~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGES-GLTTLPD-CLPAHITTLVIPDNN-LTSLPAL-----PPELRTLEVSGN-QLTSLPV--LPPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCC-CCCcCCc-chhcCCCEEEccCCc-CCCCCCC-----CCCCcEEEecCC-ccCcccC--cccccceeecc
Confidence 4556777766 5556665 223467777777754 5556541 266777777664 3444442 23455555555
Q ss_pred cCcccccccccccccccCCCccccccccccccccCCCcccccccCCCchhhhcccccCCCCCccEEEeccCCCchhhHhh
Q 006531 306 RCDNIRTLTVEEGIQCSSGRRYTSSLLEHLHIENCPSLTCIFSKNELPATLESLEVGNLPPSLKSLFVWDCPKLESIAER 385 (641)
Q Consensus 306 ~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 385 (641)
++. +..+| ..+.+|+.|++++| .+..+|..
T Consensus 271 ~N~-L~~Lp------------------------------------------------~lp~~L~~L~Ls~N-~Lt~LP~~ 300 (788)
T PRK15387 271 SNP-LTHLP------------------------------------------------ALPSGLCKLWIFGN-QLTSLPVL 300 (788)
T ss_pred CCc-hhhhh------------------------------------------------hchhhcCEEECcCC-cccccccc
Confidence 532 22222 11234445555443 23333321
Q ss_pred hccCCCccEEEeecccCcccccccccCCCccceeeeccCCCccccCCCCCCCCCCcEEEeccccCCcccccccCCCCCcc
Q 006531 386 LDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEALPKGLHNLTSLQ 465 (641)
Q Consensus 386 l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~ 465 (641)
+++|+.|++++| .+..+|.. ..+|+.|++++| .+..+|.. .++|+.|++++|. ++.+|.. ..+|+
T Consensus 301 ---p~~L~~LdLS~N-~L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~N~-Ls~LP~l---p~~L~ 365 (788)
T PRK15387 301 ---PPGLQELSVSDN-QLASLPAL---PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSDNQ-LASLPTL---PSELY 365 (788)
T ss_pred ---ccccceeECCCC-ccccCCCC---cccccccccccC-cccccccc---ccccceEecCCCc-cCCCCCC---Ccccc
Confidence 244555555555 33344321 123455555553 33444421 1256666666554 4444432 23455
Q ss_pred EEEEEcCCccCCcCCCCCCCcceEEecccccchhhhcccccccccCCCccEEEEecCCCCcccccccccccCCCCCCCCC
Q 006531 466 HLAIIGGEFPSLEEDGLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTALPLPAS 545 (641)
Q Consensus 466 ~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~ 545 (641)
.|++++|.+..+|. .+++|+.|++++|... .++. ..++|+.|++++ +.+..+|. .+.+
T Consensus 366 ~L~Ls~N~L~~LP~--l~~~L~~LdLs~N~Lt--~LP~------l~s~L~~LdLS~--N~LssIP~----------l~~~ 423 (788)
T PRK15387 366 KLWAYNNRLTSLPA--LPSGLKELIVSGNRLT--SLPV------LPSELKELMVSG--NRLTSLPM----------LPSG 423 (788)
T ss_pred eehhhccccccCcc--cccccceEEecCCccc--CCCC------cccCCCEEEccC--CcCCCCCc----------chhh
Confidence 66666666665543 2356777777666432 2222 134677777777 45666653 3456
Q ss_pred cceEeeccCCCcccccccccCCCCccEEEecCCCCC
Q 006531 546 LTSLRIVDFPNLERLSSSIVDLQNLTSLYLYDCPKL 581 (641)
Q Consensus 546 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 581 (641)
|+.|++++ ++++.+|..+..+++|+.|++++|+.-
T Consensus 424 L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 424 LLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred hhhhhhcc-CcccccChHHhhccCCCeEECCCCCCC
Confidence 77777777 577777777777788888888876543
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=9.1e-14 Score=151.53 Aligned_cols=255 Identities=27% Similarity=0.383 Sum_probs=181.7
Q ss_pred CccEEEcccccCCccccccCCCCCCcEEecccCcccccccccccccccCCCccccccccccccccCCCcccccccCCCch
Q 006531 275 SLEILYIEGCRSLTYIAAVQLPSSLKKLQIHRCDNIRTLTVEEGIQCSSGRRYTSSLLEHLHIENCPSLTCIFSKNELPA 354 (641)
Q Consensus 275 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 354 (641)
.-..|+++++ .++.+|.. ..++|+.|.+.++ .++.+| .. .++|++|++++ ++++. +|
T Consensus 202 ~~~~LdLs~~-~LtsLP~~-l~~~L~~L~L~~N-~Lt~LP--~l----------p~~Lk~LdLs~-N~Lts-LP------ 258 (788)
T PRK15387 202 GNAVLNVGES-GLTTLPDC-LPAHITTLVIPDN-NLTSLP--AL----------PPELRTLEVSG-NQLTS-LP------ 258 (788)
T ss_pred CCcEEEcCCC-CCCcCCcc-hhcCCCEEEccCC-cCCCCC--CC----------CCCCcEEEecC-CccCc-cc------
Confidence 3445666654 34445442 2345666666653 344455 21 23488888877 56766 33
Q ss_pred hhhcccccCCCCCccEEEeccCCCchhhHhhhccCCCccEEEeecccCcccccccccCCCccceeeeccCCCccccCCCC
Q 006531 355 TLESLEVGNLPPSLKSLFVWDCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGG 434 (641)
Q Consensus 355 ~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 434 (641)
..+++|+.|++.+| .+..+|.. +.+|+.|++++| .++.+|. ..++|+.|++++| .+..+|..
T Consensus 259 --------~lp~sL~~L~Ls~N-~L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~l- 320 (788)
T PRK15387 259 --------VLPPGLLELSIFSN-PLTHLPAL---PSGLCKLWIFGN-QLTSLPV---LPPGLQELSVSDN-QLASLPAL- 320 (788)
T ss_pred --------CcccccceeeccCC-chhhhhhc---hhhcCEEECcCC-ccccccc---cccccceeECCCC-ccccCCCC-
Confidence 22478999999986 46666653 367899999999 6777775 3578999999995 56666642
Q ss_pred CCCCCCcEEEeccccCCcccccccCCCCCccEEEEEcCCccCCcCCCCCCCcceEEecccccchhhhcccccccccCCCc
Q 006531 435 LPCAKLTTLVICHCERLEALPKGLHNLTSLQHLAIIGGEFPSLEEDGLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSL 514 (641)
Q Consensus 435 ~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L 514 (641)
.++|+.|++.+|. ++.+|.. ..+|++|++++|.+..+|. .+++|+.|++++|... .++. ...+|
T Consensus 321 --p~~L~~L~Ls~N~-L~~LP~l---p~~Lq~LdLS~N~Ls~LP~--lp~~L~~L~Ls~N~L~--~LP~------l~~~L 384 (788)
T PRK15387 321 --PSELCKLWAYNNQ-LTSLPTL---PSGLQELSVSDNQLASLPT--LPSELYKLWAYNNRLT--SLPA------LPSGL 384 (788)
T ss_pred --cccccccccccCc-ccccccc---ccccceEecCCCccCCCCC--CCcccceehhhccccc--cCcc------ccccc
Confidence 2478899999876 5556642 2579999999999998875 4678999999987543 3433 23589
Q ss_pred cEEEEecCCCCcccccccccccCCCCCCCCCcceEeeccCCCcccccccccCCCCccEEEecCCCCCcccCCC-Cccccc
Q 006531 515 RELIIQGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTSLYLYDCPKLKYFPEK-GLPSSL 593 (641)
Q Consensus 515 ~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L 593 (641)
+.|++++ +.+..+|. .+++|+.|++++ +.+..+|. ...+|+.|++++ +.++.+|.. ..+++|
T Consensus 385 ~~LdLs~--N~Lt~LP~----------l~s~L~~LdLS~-N~LssIP~---l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L 447 (788)
T PRK15387 385 KELIVSG--NRLTSLPV----------LPSELKELMVSG-NRLTSLPM---LPSGLLSLSVYR-NQLTRLPESLIHLSSE 447 (788)
T ss_pred ceEEecC--CcccCCCC----------cccCCCEEEccC-CcCCCCCc---chhhhhhhhhcc-CcccccChHHhhccCC
Confidence 9999998 67777774 457899999999 47888884 346789999998 557888873 336799
Q ss_pred ceEEecCCch
Q 006531 594 LQLDIYRCPL 603 (641)
Q Consensus 594 ~~L~l~~c~~ 603 (641)
+.|++++|+.
T Consensus 448 ~~LdLs~N~L 457 (788)
T PRK15387 448 TTVNLEGNPL 457 (788)
T ss_pred CeEECCCCCC
Confidence 9999999985
No 15
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.41 E-value=1e-14 Score=141.25 Aligned_cols=306 Identities=17% Similarity=0.242 Sum_probs=214.8
Q ss_pred CCcceEeecCcCCchhhhhcchHHhhcCCCCcEEEeccCCcccccccchhhhhhhhhhccCCCccEEEeccCcCccccc-
Q 006531 140 PKLEELEINNIKNETDIWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLP- 218 (641)
Q Consensus 140 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~- 218 (641)
..|+.|.++||..+.+ .....+...|+++++|.+.+|.++++ ..+..++++|++|++|++..|..++...
T Consensus 138 g~lk~LSlrG~r~v~~--sslrt~~~~CpnIehL~l~gc~~iTd-------~s~~sla~~C~~l~~l~L~~c~~iT~~~L 208 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGD--SSLRTFASNCPNIEHLALYGCKKITD-------SSLLSLARYCRKLRHLNLHSCSSITDVSL 208 (483)
T ss_pred cccccccccccccCCc--chhhHHhhhCCchhhhhhhcceeccH-------HHHHHHHHhcchhhhhhhcccchhHHHHH
Confidence 5689999999988766 12233447899999999999998887 5688899999999999999987665332
Q ss_pred -cccCCCCCccEEEecCCCCCcc--CCC-ccCCCCccEEEccCCcCCccCChhhhhccCCCccEEEcccccCCcccccc-
Q 006531 219 -QSSLSLCSLREIEICKCSSLVS--FPE-VALPSKLKKIRISSCDALKSLPEEWMCDTNSSLEILYIEGCRSLTYIAAV- 293 (641)
Q Consensus 219 -~~~~~l~~L~~L~L~~~~~l~~--l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~- 293 (641)
.....|++|++|+++.|+.+.. +.. ..++..++.+...+|...+.-........++-+..+++..|..+++....
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~ 288 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL 288 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence 1334689999999999987765 222 45677788888888876655444444444466777788788777765433
Q ss_pred --CCCCCCcEEecccCcccccccccccccccCCCccccccccccccccCCCcccccccCCCchhhhcccccCCCCCccEE
Q 006531 294 --QLPSSLKKLQIHRCDNIRTLTVEEGIQCSSGRRYTSSLLEHLHIENCPSLTCIFSKNELPATLESLEVGNLPPSLKSL 371 (641)
Q Consensus 294 --~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~L~~L 371 (641)
..+..|+.+..++|..+.+.++.. +.+ ..++|+.+-+.+|.++++ . ++.. .+.-.+.|+.+
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d~~l~a-Lg~------~~~~L~~l~l~~c~~fsd-~-------~ft~--l~rn~~~Le~l 351 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITDEVLWA-LGQ------HCHNLQVLELSGCQQFSD-R-------GFTM--LGRNCPHLERL 351 (483)
T ss_pred HhhhhhHhhhhcccCCCCCchHHHHH-Hhc------CCCceEEEeccccchhhh-h-------hhhh--hhcCChhhhhh
Confidence 456788999999998876544211 111 235699999999988776 1 1111 23233689999
Q ss_pred EeccCCCchh--hHhhhccCCCccEEEeecccCcccc-----cccccCCCccceeeeccCCCccccC-CCCCCCCCCcEE
Q 006531 372 FVWDCPKLES--IAERLDNNTSLETISIYNCENLKIL-----PSGLHNLRQLRGITIQSCANLVSFP-EGGLPCAKLTTL 443 (641)
Q Consensus 372 ~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~l-----~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L 443 (641)
++..|..+.+ +.....+++.|+++.++.|..+++. .....++..|+.+.+++|+.+.+-. .....+++|+.+
T Consensus 352 ~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri 431 (483)
T KOG4341|consen 352 DLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERI 431 (483)
T ss_pred cccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccccee
Confidence 9988765533 3344457889999999998776654 3345667888899999988776433 344567888988
Q ss_pred EeccccCCcccc--cccCCCCCccEEEEEc
Q 006531 444 VICHCERLEALP--KGLHNLTSLQHLAIIG 471 (641)
Q Consensus 444 ~l~~c~~l~~~~--~~~~~l~~L~~L~l~~ 471 (641)
++.+|.....-+ ....++|+++...+..
T Consensus 432 ~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 432 ELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred eeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 888888775443 2345667766655544
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.39 E-value=1.9e-12 Score=142.28 Aligned_cols=122 Identities=23% Similarity=0.335 Sum_probs=74.3
Q ss_pred CCCcEEEeccCCcccccccchhhhhhhhhhccCCCccEEEeccCcCccccccccCCCCCccEEEecCCCCCccCCCccCC
Q 006531 168 CSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVSFPEVALP 247 (641)
Q Consensus 168 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l 247 (641)
.+...|++++ ..++.+|.. .+++|+.|++++|.. ..+|..+. .+|+.|++++| .+..+|. ..+
T Consensus 178 ~~~~~L~L~~-~~LtsLP~~-----------Ip~~L~~L~Ls~N~L-tsLP~~l~--~nL~~L~Ls~N-~LtsLP~-~l~ 240 (754)
T PRK15370 178 NNKTELRLKI-LGLTTIPAC-----------IPEQITTLILDNNEL-KSLPENLQ--GNIKTLYANSN-QLTSIPA-TLP 240 (754)
T ss_pred cCceEEEeCC-CCcCcCCcc-----------cccCCcEEEecCCCC-CcCChhhc--cCCCEEECCCC-ccccCCh-hhh
Confidence 3567777776 356666553 136778888877754 56665443 57888888776 4556654 234
Q ss_pred CCccEEEccCCcCCccCChhhhhccCCCccEEEcccccCCccccccCCCCCCcEEecccCccccccc
Q 006531 248 SKLKKIRISSCDALKSLPEEWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKKLQIHRCDNIRTLT 314 (641)
Q Consensus 248 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~ 314 (641)
++|+.|++++|. +..+|..+. .+|+.|++++| .++.+|. ..+++|+.|++++| .++.+|
T Consensus 241 ~~L~~L~Ls~N~-L~~LP~~l~----s~L~~L~Ls~N-~L~~LP~-~l~~sL~~L~Ls~N-~Lt~LP 299 (754)
T PRK15370 241 DTIQEMELSINR-ITELPERLP----SALQSLDLFHN-KISCLPE-NLPEELRYLSVYDN-SIRTLP 299 (754)
T ss_pred ccccEEECcCCc-cCcCChhHh----CCCCEEECcCC-ccCcccc-ccCCCCcEEECCCC-ccccCc
Confidence 577888888775 556666442 46777777754 4555543 22346677776665 333343
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.34 E-value=3.1e-12 Score=140.52 Aligned_cols=37 Identities=22% Similarity=0.339 Sum_probs=16.9
Q ss_pred CccEEEcccccCCccccccCCCCCCcEEecccCccccccc
Q 006531 275 SLEILYIEGCRSLTYIAAVQLPSSLKKLQIHRCDNIRTLT 314 (641)
Q Consensus 275 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~ 314 (641)
+...|++++. .++.+|.. .++.++.|+++++ .++.+|
T Consensus 179 ~~~~L~L~~~-~LtsLP~~-Ip~~L~~L~Ls~N-~LtsLP 215 (754)
T PRK15370 179 NKTELRLKIL-GLTTIPAC-IPEQITTLILDNN-ELKSLP 215 (754)
T ss_pred CceEEEeCCC-CcCcCCcc-cccCCcEEEecCC-CCCcCC
Confidence 3455555553 34444421 2345555555554 333444
No 18
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.32 E-value=8.4e-14 Score=135.02 Aligned_cols=55 Identities=20% Similarity=0.326 Sum_probs=34.7
Q ss_pred CCccEEEeccCCCchh-hHhhhccCCCccEEEeecccCcccc--cccccCCCccceee
Q 006531 366 PSLKSLFVWDCPKLES-IAERLDNNTSLETISIYNCENLKIL--PSGLHNLRQLRGIT 420 (641)
Q Consensus 366 ~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~l--~~~~~~l~~L~~L~ 420 (641)
..++.+.+++|+.+.+ ..+.+..+++|+.+++.+|..+..- ......+|+++...
T Consensus 401 ~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 401 EGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred cccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 4677888888877643 3456677888888888888665442 22233455555443
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.27 E-value=2.5e-13 Score=130.72 Aligned_cols=88 Identities=14% Similarity=0.188 Sum_probs=65.4
Q ss_pred hhhccCCCccEEEeecccCcccc-cccccCCCccceeeeccCCCccccCC-CCCCCCCCcEEEeccccCCcccccccCCC
Q 006531 384 ERLDNNTSLETISIYNCENLKIL-PSGLHNLRQLRGITIQSCANLVSFPE-GGLPCAKLTTLVICHCERLEALPKGLHNL 461 (641)
Q Consensus 384 ~~l~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~l 461 (641)
..+..+++|++|++++| .++.+ +.+|.+...+++|.+.+ +.++.+.. .+..+..|++|++++|+.-...|..|..+
T Consensus 268 ~cf~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred HHHhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCeeEEEeccccccc
Confidence 34778889999999988 45544 45688888899998888 45665554 34557788889998888666667778888
Q ss_pred CCccEEEEEcCC
Q 006531 462 TSLQHLAIIGGE 473 (641)
Q Consensus 462 ~~L~~L~l~~~~ 473 (641)
.+|.+|++-.|.
T Consensus 346 ~~l~~l~l~~Np 357 (498)
T KOG4237|consen 346 FSLSTLNLLSNP 357 (498)
T ss_pred ceeeeeehccCc
Confidence 888888886643
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.25 E-value=7.4e-14 Score=134.29 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=68.0
Q ss_pred CCCCCcceEeecCcCCchhhhhcchHHhhcCCCCcEEEeccCCcccccccchhhhhhhhhhccCCCccEEEeccCcCccc
Q 006531 137 PRIPKLEELEINNIKNETDIWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVK 216 (641)
Q Consensus 137 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~ 216 (641)
..+++|+.|+|+.+. +.. +.+.+|..+++|-.|.+.+.+++++++... +++| ..|+.|.+.-|+....
T Consensus 88 ~~l~~LRrLdLS~N~-Is~---I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~----F~gL----~slqrLllNan~i~Ci 155 (498)
T KOG4237|consen 88 KTLHRLRRLDLSKNN-ISF---IAPDAFKGLASLLSLVLYGNNKITDLPKGA----FGGL----SSLQRLLLNANHINCI 155 (498)
T ss_pred cchhhhceecccccc-hhh---cChHhhhhhHhhhHHHhhcCCchhhhhhhH----hhhH----HHHHHHhcChhhhcch
Confidence 678888888888764 343 666777888888888777777888877753 5555 6666666665555344
Q ss_pred cccccCCCCCccEEEecCCCCCccCCC--ccCCCCccEEEccCCc
Q 006531 217 LPQSSLSLCSLREIEICKCSSLVSFPE--VALPSKLKKIRISSCD 259 (641)
Q Consensus 217 l~~~~~~l~~L~~L~L~~~~~l~~l~~--~~~l~~L~~L~l~~~~ 259 (641)
..+.+..+++|..|.+..+ .+..++. +..+..++.+.+..+.
T Consensus 156 r~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 156 RQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 4445566666666666554 3333332 3345555555554443
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.24 E-value=1.3e-13 Score=117.37 Aligned_cols=158 Identities=26% Similarity=0.357 Sum_probs=115.0
Q ss_pred CCccEEEeccCCCchhhHhhhccCCCccEEEeecccCcccccccccCCCccceeeeccCCCccccCCCCCCCCCCcEEEe
Q 006531 366 PSLKSLFVWDCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVI 445 (641)
Q Consensus 366 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l 445 (641)
..+..|.++++ .+..+|..+..+.+|+.|++++| .+.++|..+.++++|+.|.+.- +.+..+|.+++.+|.|+.|++
T Consensus 33 s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhc
Confidence 45677777774 56667777777888888888877 6777888888888888888775 567777888888888888888
Q ss_pred ccccCC-cccccccCCCCCccEEEEEcCCccCCcCC-CCCCCcceEEecccccchhhhcccccccccCCCccEEEEecCC
Q 006531 446 CHCERL-EALPKGLHNLTSLQHLAIIGGEFPSLEED-GLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCD 523 (641)
Q Consensus 446 ~~c~~l-~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~ 523 (641)
.+|..- ..+|..|..+..|+.|+++.|++..+|.. +.+++|+.|.+++|..+ .+|. .++.++.|++|+|.+
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll--~lpk---eig~lt~lrelhiqg-- 182 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL--SLPK---EIGDLTRLRELHIQG-- 182 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh--hCcH---HHHHHHHHHHHhccc--
Confidence 776644 34677777788888888888877776554 67777777777777655 3333 566777777777777
Q ss_pred CCcccccccc
Q 006531 524 DDMVSFPLED 533 (641)
Q Consensus 524 ~~~~~~~~~~ 533 (641)
+.+..+|.+.
T Consensus 183 nrl~vlppel 192 (264)
T KOG0617|consen 183 NRLTVLPPEL 192 (264)
T ss_pred ceeeecChhh
Confidence 5666665544
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.17 E-value=1.7e-13 Score=116.71 Aligned_cols=158 Identities=22% Similarity=0.343 Sum_probs=107.7
Q ss_pred hccCCCccEEEeecccCcccccccccCCCccceeeeccCCCccccCCCCCCCCCCcEEEeccccCCcccccccCCCCCcc
Q 006531 386 LDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEALPKGLHNLTSLQ 465 (641)
Q Consensus 386 l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~ 465 (641)
+..+.+++.|.+++| ++..+|..+..+.+|+.|.+.+ +.++.+|.....+|+|+.|++.-|. +..+|.+|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhh
Confidence 445678889999999 7888899999999999999998 6788999888889999999997754 777888899999999
Q ss_pred EEEEEcCCccC--CcCC-CCCCCcceEEecccccchhhhcccccccccCCCccEEEEecCCCCcccccccccccCCCCCC
Q 006531 466 HLAIIGGEFPS--LEED-GLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTALPL 542 (641)
Q Consensus 466 ~L~l~~~~l~~--l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~ 542 (641)
.|++++|.+.. +|+- ..++.|+.|++++| ..+.+|.+.+ .
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dn------------------------------dfe~lp~dvg-------~ 148 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDN------------------------------DFEILPPDVG-------K 148 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCC------------------------------CcccCChhhh-------h
Confidence 88888866543 2221 22344555555544 4444444432 4
Q ss_pred CCCcceEeeccCCCcccccccccCCCCccEEEecCCCCCcccC
Q 006531 543 PASLTSLRIVDFPNLERLSSSIVDLQNLTSLYLYDCPKLKYFP 585 (641)
Q Consensus 543 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 585 (641)
+++|+.|.+.+ +.+-++|.+++.+.+|+.|++.++ .++-+|
T Consensus 149 lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqgn-rl~vlp 189 (264)
T KOG0617|consen 149 LTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQGN-RLTVLP 189 (264)
T ss_pred hcceeEEeecc-CchhhCcHHHHHHHHHHHHhcccc-eeeecC
Confidence 44455555554 355555555566666666666663 344443
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.13 E-value=1.4e-10 Score=129.58 Aligned_cols=110 Identities=22% Similarity=0.287 Sum_probs=94.4
Q ss_pred CCCCCcceEeecCcCC-chhhhhcchHHhhcCCCCcEEEeccCCcccccccchhhhhhhhhhccCCCccEEEeccCcCcc
Q 006531 137 PRIPKLEELEINNIKN-ETDIWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLV 215 (641)
Q Consensus 137 ~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 215 (641)
..+++|++|-+.++.. +.. ++..+|..++.|++|++++|..+..+|.+ ++.+ -+||+|+++++.. .
T Consensus 542 ~~~~~L~tLll~~n~~~l~~---is~~ff~~m~~LrVLDLs~~~~l~~LP~~-----I~~L----i~LryL~L~~t~I-~ 608 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLE---ISGEFFRSLPLLRVLDLSGNSSLSKLPSS-----IGEL----VHLRYLDLSDTGI-S 608 (889)
T ss_pred CCCCccceEEEeecchhhhh---cCHHHHhhCcceEEEECCCCCccCcCChH-----Hhhh----hhhhcccccCCCc-c
Confidence 4566899999988763 554 77888999999999999999999999887 8888 9999999999976 7
Q ss_pred ccccccCCCCCccEEEecCCCCCccCCCc-cCCCCccEEEccCCc
Q 006531 216 KLPQSSLSLCSLREIEICKCSSLVSFPEV-ALPSKLKKIRISSCD 259 (641)
Q Consensus 216 ~l~~~~~~l~~L~~L~L~~~~~l~~l~~~-~~l~~L~~L~l~~~~ 259 (641)
.+|..+++++.|.+|++..+.....++.+ ..+.+||+|.+..-.
T Consensus 609 ~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 609 HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 99999999999999999998877777664 449999999987643
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.02 E-value=8.1e-11 Score=119.73 Aligned_cols=34 Identities=21% Similarity=0.127 Sum_probs=15.7
Q ss_pred CCCcEEEeccccCCcc----cccccCCC-CCccEEEEEc
Q 006531 438 AKLTTLVICHCERLEA----LPKGLHNL-TSLQHLAIIG 471 (641)
Q Consensus 438 ~~L~~L~l~~c~~l~~----~~~~~~~l-~~L~~L~l~~ 471 (641)
++|+.+++++|..... +...+... +.|+++++..
T Consensus 278 ~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 278 ESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred CCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 4556666655543321 22233333 4555555544
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.99 E-value=6.8e-11 Score=120.26 Aligned_cols=233 Identities=20% Similarity=0.113 Sum_probs=97.0
Q ss_pred CccEEEeccCCCc----hhhHhhhccCCCccEEEeecccCc------ccccccccCCCccceeeeccCCCccccCCCCCC
Q 006531 367 SLKSLFVWDCPKL----ESIAERLDNNTSLETISIYNCENL------KILPSGLHNLRQLRGITIQSCANLVSFPEGGLP 436 (641)
Q Consensus 367 ~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~------~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 436 (641)
.|+.|++.++... ..++..+...+++++++++++... ..++..+..+++|++|++++|......+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 3555555554321 123333444455555555544221 112223344555555555554332211111111
Q ss_pred C---CCCcEEEeccccCCc----ccccccCCC-CCccEEEEEcCCccCC-----c-CCCCCCCcceEEecccccchhhhc
Q 006531 437 C---AKLTTLVICHCERLE----ALPKGLHNL-TSLQHLAIIGGEFPSL-----E-EDGLPTNLQSLRIWGNMEIWKSMI 502 (641)
Q Consensus 437 ~---~~L~~L~l~~c~~l~----~~~~~~~~l-~~L~~L~l~~~~l~~l-----~-~~~~~~~L~~L~l~~~~~~~~~~~ 502 (641)
+ ++|+.|++++|.... .+...+..+ ++|++|+++++.+..- . ....+++|++|++++|......+.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 1 235666665554221 112233444 5566666666554410 0 012334566666666543322211
Q ss_pred ccccccccCCCccEEEEecCCCCcccccccccccCCCCCCCCCcceEeeccCCCccc-----ccccc-cCCCCccEEEec
Q 006531 503 ERGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLER-----LSSSI-VDLQNLTSLYLY 576 (641)
Q Consensus 503 ~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~-~~l~~L~~L~l~ 576 (641)
.....+..+++|+.|++++| .+...... .+...+...++|++|++++| .+.. +...+ ...+.|+.|+++
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n--~i~~~~~~--~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~ 258 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNN--GLTDEGAS--ALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLS 258 (319)
T ss_pred HHHHHHHhCCCCCEEeccCC--ccChHHHH--HHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEcc
Confidence 10012334456666666664 22111000 00001123456666666664 3331 11000 123567777777
Q ss_pred CCCCCc----ccCC-CCcccccceEEecCCchh
Q 006531 577 DCPKLK----YFPE-KGLPSSLLQLDIYRCPLM 604 (641)
Q Consensus 577 ~c~~l~----~l~~-~~~~~~L~~L~l~~c~~l 604 (641)
+|.... .+.. ....++|+.+++++|..-
T Consensus 259 ~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 259 CNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 764321 0111 011256777777777654
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.90 E-value=2.4e-09 Score=119.96 Aligned_cols=107 Identities=24% Similarity=0.297 Sum_probs=63.7
Q ss_pred cCCCCcEEEeccCCc-ccccccchhhhhhhhhhccCCCccEEEeccCcCccccccccCCCCCccEEEecCCCCCccCCC-
Q 006531 166 DICSLKRLTIDSCPK-LQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVSFPE- 243 (641)
Q Consensus 166 ~~~~L~~L~l~~c~~-l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~l~~- 243 (641)
.++.|+.|-+.++.. +..++.. .+..+ |.|+.||+++|.....+|..++.+-+|++|+++++ .+..+|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~----ff~~m----~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~ 613 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGE----FFRSL----PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSG 613 (889)
T ss_pred CCCccceEEEeecchhhhhcCHH----HHhhC----cceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchH
Confidence 445666666665432 3333332 14444 77777777777666677777777777777777665 4555665
Q ss_pred ccCCCCccEEEccCCcCCccCChhhhhccCCCccEEEccc
Q 006531 244 VALPSKLKKIRISSCDALKSLPEEWMCDTNSSLEILYIEG 283 (641)
Q Consensus 244 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 283 (641)
++.+.+|.+|++..+..+..++...... ++|++|.+..
T Consensus 614 l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L--~~Lr~L~l~~ 651 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRLESIPGILLEL--QSLRVLRLPR 651 (889)
T ss_pred HHHHHhhheeccccccccccccchhhhc--ccccEEEeec
Confidence 5666677777776666555554433333 6666666654
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=8.5e-09 Score=101.35 Aligned_cols=204 Identities=18% Similarity=0.122 Sum_probs=110.9
Q ss_pred CCccEEEeccCCCchhhH--hhhccCCCccEEEeecccCccc---ccccccCCCccceeeeccCCCccccCC--CCCCCC
Q 006531 366 PSLKSLFVWDCPKLESIA--ERLDNNTSLETISIYNCENLKI---LPSGLHNLRQLRGITIQSCANLVSFPE--GGLPCA 438 (641)
Q Consensus 366 ~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~---l~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~~~ 438 (641)
.+|+...+.++. +...+ .....|++++.|+++.| .+.. +......+|+|+.|.++.|. +..... ....++
T Consensus 121 kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 121 KKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLS 197 (505)
T ss_pred HhhhheeecCcc-ccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhh
Confidence 345555555432 22222 23445666666666665 2221 22234556666666666642 221111 223466
Q ss_pred CCcEEEeccccCCc-ccccccCCCCCccEEEEEcCC-ccCC-cCCCCCCCcceEEecccccchhhhcccccccccCCCcc
Q 006531 439 KLTTLVICHCERLE-ALPKGLHNLTSLQHLAIIGGE-FPSL-EEDGLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLR 515 (641)
Q Consensus 439 ~L~~L~l~~c~~l~-~~~~~~~~l~~L~~L~l~~~~-l~~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~ 515 (641)
+|+.|.+++|.... .+......+|+|+.|++..|. +... .....+..|++|+|++|+.+....-. ..+.+|.|.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~---~~~~l~~L~ 274 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGY---KVGTLPGLN 274 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccc---ccccccchh
Confidence 78888888876432 233345667888888888863 2211 11245678888999888877544323 577889999
Q ss_pred EEEEecCCCCcccccccccccCCCCCCCCCcceEeeccCCCcccccc--cccCCCCccEEEecCC
Q 006531 516 ELIIQGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS--SIVDLQNLTSLYLYDC 578 (641)
Q Consensus 516 ~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c 578 (641)
.|.++.| ++.++..-..........+++|+.|++.+ +++..++. .+..+++|+.|.+..+
T Consensus 275 ~Lnls~t--gi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 275 QLNLSST--GIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred hhhcccc--CcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhcccc
Confidence 9999884 44444221110001112456788888877 35543332 2234566666665543
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.8e-08 Score=99.11 Aligned_cols=132 Identities=19% Similarity=0.222 Sum_probs=66.2
Q ss_pred CCCCCccEEEEEcCCccCCcC---CCCCCCcceEEecccccchhhhcccccccccCCCccEEEEecCCCCcccccccccc
Q 006531 459 HNLTSLQHLAIIGGEFPSLEE---DGLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVSFPLEDKR 535 (641)
Q Consensus 459 ~~l~~L~~L~l~~~~l~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~ 535 (641)
..+++|+.|+++.|.+....+ ....+.|+.|.|+.|......+. +.+..+|+|+.|++.++ +.+......-
T Consensus 169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~---~~~~~fPsl~~L~L~~N-~~~~~~~~~~-- 242 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQ---WILLTFPSLEVLYLEAN-EIILIKATST-- 242 (505)
T ss_pred HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHH---HHHHhCCcHHHhhhhcc-cccceecchh--
Confidence 344555555555544433211 12445666666666655433332 24556667777776664 2221111111
Q ss_pred cCCCCCCCCCcceEeeccCCCccccc--ccccCCCCccEEEecCCCCCccc--CCC------CcccccceEEecCCch
Q 006531 536 LGTALPLPASLTSLRIVDFPNLERLS--SSIVDLQNLTSLYLYDCPKLKYF--PEK------GLPSSLLQLDIYRCPL 603 (641)
Q Consensus 536 ~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~l--~~~------~~~~~L~~L~l~~c~~ 603 (641)
..+..|++|+|++. ++...+ .....+|.|..|+++.|. +.++ |.. ...++|++|++..|+.
T Consensus 243 -----~i~~~L~~LdLs~N-~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 243 -----KILQTLQELDLSNN-NLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred -----hhhhHHhhccccCC-cccccccccccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCcc
Confidence 24556667777663 333333 233566667777666643 3332 221 2245677777766663
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.54 E-value=1.7e-08 Score=94.27 Aligned_cols=132 Identities=17% Similarity=0.192 Sum_probs=90.6
Q ss_pred CCCCcEEEeccccCCcccccccCCCCCccEEEEEcCCccCCcCCCCCCCcceEEecccccchhhhcccccccccCCCccE
Q 006531 437 CAKLTTLVICHCERLEALPKGLHNLTSLQHLAIIGGEFPSLEEDGLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRE 516 (641)
Q Consensus 437 ~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~ 516 (641)
...|+.+++++|. ++.+..++.-.|.++.|+++.|.+..+.....+++|+.|++++|.... +. ..-.++-+.+.
T Consensus 283 Wq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~--~~---Gwh~KLGNIKt 356 (490)
T KOG1259|consen 283 WQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAE--CV---GWHLKLGNIKT 356 (490)
T ss_pred Hhhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHh--hh---hhHhhhcCEee
Confidence 3467778887765 555666667778888888888888777667777888888888764332 11 13346778888
Q ss_pred EEEecCCCCcccccccccccCCCCCCCCCcceEeeccCCCcccc--cccccCCCCccEEEecCCCCCcccCC
Q 006531 517 LIIQGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERL--SSSIVDLQNLTSLYLYDCPKLKYFPE 586 (641)
Q Consensus 517 L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~l~~L~~L~l~~c~~l~~l~~ 586 (641)
|.+++ +.++++..-. .+.+|..|++++ ++++.+ ...++.+|.|+++.+.+|+ +..+++
T Consensus 357 L~La~--N~iE~LSGL~--------KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 357 LKLAQ--NKIETLSGLR--------KLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP-LAGSVD 416 (490)
T ss_pred eehhh--hhHhhhhhhH--------hhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC-ccccch
Confidence 88887 6677666543 556788888888 566654 2356888888888888865 444444
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.51 E-value=3.7e-09 Score=107.06 Aligned_cols=189 Identities=23% Similarity=0.347 Sum_probs=124.9
Q ss_pred cEEEeccCCCchhhHhhhccCCCccEEEeecccCcccccccccCCCccceeeeccCCCccccCCCCCCCCCCcEEEeccc
Q 006531 369 KSLFVWDCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHC 448 (641)
Q Consensus 369 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c 448 (641)
...+++.+ ....+|..+..|..|+.+.++.| .+..+|.++.++..|..|+++. +.+..+|.....+ -|+.|-+++|
T Consensus 78 ~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~l-pLkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRN-RFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDL-PLKVLIVSNN 153 (722)
T ss_pred hhhhcccc-ccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhcc-chhhcCChhhhcC-cceeEEEecC
Confidence 34566663 56778888888889999999988 7788899999999999999998 5678888777777 4888888775
Q ss_pred cCCcccccccCCCCCccEEEEEcCCccCCcCCCCCCCcceEEecccccchhhhcccccccccCCCccEEEEecCCCCccc
Q 006531 449 ERLEALPKGLHNLTSLQHLAIIGGEFPSLEEDGLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVS 528 (641)
Q Consensus 449 ~~l~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~~~~~ 528 (641)
+ ++.+|..++.+..|..|+.+.|++..++. .+..+.+|+.|.++. +.+..
T Consensus 154 k-l~~lp~~ig~~~tl~~ld~s~nei~slps---------------------------ql~~l~slr~l~vrR--n~l~~ 203 (722)
T KOG0532|consen 154 K-LTSLPEEIGLLPTLAHLDVSKNEIQSLPS---------------------------QLGYLTSLRDLNVRR--NHLED 203 (722)
T ss_pred c-cccCCcccccchhHHHhhhhhhhhhhchH---------------------------HhhhHHHHHHHHHhh--hhhhh
Confidence 4 77888877777777777777777665543 334445555555554 45555
Q ss_pred ccccccccCCCCCCCCCcceEeeccCCCcccccccccCCCCccEEEecCCCCCcccCC----CCcccccceEEecCC
Q 006531 529 FPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTSLYLYDCPKLKYFPE----KGLPSSLLQLDIYRC 601 (641)
Q Consensus 529 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~----~~~~~~L~~L~l~~c 601 (641)
+|.+. ..-.|..||+++ +++..||..|..+..|++|.+.+|+ ++.-|. .+...-.++|++.-|
T Consensus 204 lp~El--------~~LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 204 LPEEL--------CSLPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CCHHH--------hCCceeeeeccc-CceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 55544 112455556554 5666666666666666666666544 333222 233344555555555
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.43 E-value=2.1e-07 Score=97.54 Aligned_cols=176 Identities=22% Similarity=0.301 Sum_probs=115.5
Q ss_pred ccCCCccEEEeecccCcccccccccCCC-ccceeeeccCCCccccCCCCCCCCCCcEEEeccccCCcccccccCCCCCcc
Q 006531 387 DNNTSLETISIYNCENLKILPSGLHNLR-QLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEALPKGLHNLTSLQ 465 (641)
Q Consensus 387 ~~l~~L~~L~l~~~~~~~~l~~~~~~l~-~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~ 465 (641)
..++.++.+++.++ .+.+++.....+. +|+.|++++ +.+..++.....++.|+.|++.+|. +..+|...+.+++|+
T Consensus 113 ~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~ 189 (394)
T COG4886 113 LELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLN 189 (394)
T ss_pred hcccceeEEecCCc-ccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhh
Confidence 33466777777766 5666666555553 777777777 4556655445566677777777765 555665555777788
Q ss_pred EEEEEcCCccCCcCC-CCCCCcceEEecccccchhhhcccccccccCCCccEEEEecCCCCcccccccccccCCCCCCCC
Q 006531 466 HLAIIGGEFPSLEED-GLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTALPLPA 544 (641)
Q Consensus 466 ~L~l~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~ 544 (641)
.|++++|.+..++.. +.+..|+++.+++|+..... ..+.++.++..+.+.+ +.+..++... ..++
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~-----~~~~~~~~l~~l~l~~--n~~~~~~~~~-------~~l~ 255 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNSIIELL-----SSLSNLKNLSGLELSN--NKLEDLPESI-------GNLS 255 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCcceecc-----hhhhhcccccccccCC--ceeeeccchh-------cccc
Confidence 888888887777766 35566888888877533211 1456667777777655 5555544433 3556
Q ss_pred CcceEeeccCCCcccccccccCCCCccEEEecCCCCC
Q 006531 545 SLTSLRIVDFPNLERLSSSIVDLQNLTSLYLYDCPKL 581 (641)
Q Consensus 545 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 581 (641)
+++.|++++ +.+.+++. +..+.+|+.|+++++...
T Consensus 256 ~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 256 NLETLDLSN-NQISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccceecccc-cccccccc-ccccCccCEEeccCcccc
Confidence 788888887 47777766 677788888888885444
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.43 E-value=1e-07 Score=85.47 Aligned_cols=125 Identities=22% Similarity=0.256 Sum_probs=40.2
Q ss_pred CccEEEeecccCccccccccc-CCCccceeeeccCCCccccCCCCCCCCCCcEEEeccccCCccccccc-CCCCCccEEE
Q 006531 391 SLETISIYNCENLKILPSGLH-NLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEALPKGL-HNLTSLQHLA 468 (641)
Q Consensus 391 ~L~~L~l~~~~~~~~l~~~~~-~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~l~~L~~L~ 468 (641)
.+++|++.++ .+..+. .+. .+.+|+.|++++| .++.+. +...++.|++|++++|. ++.+..++ ..+++|++|+
T Consensus 20 ~~~~L~L~~n-~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGN-QISTIE-NLGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred cccccccccc-cccccc-chhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEEE
Confidence 4455555555 333332 222 3445555555552 333333 23334566666666655 33443333 3567777777
Q ss_pred EEcCCccCCcCC---CCCCCcceEEecccccchhhhcccccccccCCCccEEEEec
Q 006531 469 IIGGEFPSLEED---GLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQG 521 (641)
Q Consensus 469 l~~~~l~~l~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 521 (641)
+++|.+..+... ..+++|++|++.+|+..... ......+..+|+|+.||-..
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~-~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK-NYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST-THHHHHHHH-TT-SEETTEE
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchh-hHHHHHHHHcChhheeCCEE
Confidence 777666554333 45678888888887754311 11112566788888888655
No 33
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.43 E-value=8.9e-07 Score=89.24 Aligned_cols=94 Identities=31% Similarity=0.596 Sum_probs=63.0
Q ss_pred hccCCCccEEEeecccCcccccccccCCCccceeeeccCCCccccCCCCCCCCCCcEEEeccccCCcccccccCCCCCcc
Q 006531 386 LDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEALPKGLHNLTSLQ 465 (641)
Q Consensus 386 l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~ 465 (641)
+..+.+++.|++++| .++.+|. -..+|+.|.+++|..+..+|... .++|+.|.+.+|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 445688999999988 7777772 12368889998888887777533 24888888888876666653 466
Q ss_pred EEEEEcCCccCCcCCCCCCCcceEEecc
Q 006531 466 HLAIIGGEFPSLEEDGLPTNLQSLRIWG 493 (641)
Q Consensus 466 ~L~l~~~~l~~l~~~~~~~~L~~L~l~~ 493 (641)
.|++..+....+ ...+++|++|.+.+
T Consensus 116 ~L~L~~n~~~~L--~~LPssLk~L~I~~ 141 (426)
T PRK15386 116 SLEIKGSATDSI--KNVPNGLTSLSINS 141 (426)
T ss_pred eEEeCCCCCccc--ccCcchHhheeccc
Confidence 666665443332 13445677776644
No 34
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=6.3e-09 Score=97.11 Aligned_cols=180 Identities=17% Similarity=0.174 Sum_probs=92.7
Q ss_pred CccEEEecCCCCCcc--CCC-ccCCCCccEEEccCCcCCccCChhhhhccCCCccEEEcccccCCcccccc---CCCCCC
Q 006531 226 SLREIEICKCSSLVS--FPE-VALPSKLKKIRISSCDALKSLPEEWMCDTNSSLEILYIEGCRSLTYIAAV---QLPSSL 299 (641)
Q Consensus 226 ~L~~L~L~~~~~l~~--l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~L 299 (641)
.|++||+++. .++. +-. +..+.+|+.|.+.+...-..+...+... .+|+.|+++.|.+++..... ..++.|
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN--~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN--SNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcc--ccceeeccccccccchhHHHHHHHhhhhH
Confidence 4666666653 2221 111 3346677777777765444444444443 67777777777777765544 556677
Q ss_pred cEEecccCcccccccccccccccCCCccccccccccccccCCCcccccccCCCchhhhcccccCCCCCccEEEeccCCCc
Q 006531 300 KKLQIHRCDNIRTLTVEEGIQCSSGRRYTSSLLEHLHIENCPSLTCIFSKNELPATLESLEVGNLPPSLKSLFVWDCPKL 379 (641)
Q Consensus 300 ~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~ 379 (641)
..|++++|......- .-+.+ .-.++|..|+++||.+--. . ..+.- .....|+|..|++++|..+
T Consensus 263 ~~LNlsWc~l~~~~V--tv~V~-----hise~l~~LNlsG~rrnl~---~----sh~~t--L~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKV--TVAVA-----HISETLTQLNLSGYRRNLQ---K----SHLST--LVRRCPNLVHLDLSDSVML 326 (419)
T ss_pred hhcCchHhhccchhh--hHHHh-----hhchhhhhhhhhhhHhhhh---h----hHHHH--HHHhCCceeeecccccccc
Confidence 777888876543221 11111 1123466677766542211 0 00000 1112366777777766554
Q ss_pred h-hhHhhhccCCCccEEEeecccCccc-ccccccCCCccceeeeccC
Q 006531 380 E-SIAERLDNNTSLETISIYNCENLKI-LPSGLHNLRQLRGITIQSC 424 (641)
Q Consensus 380 ~-~~~~~l~~l~~L~~L~l~~~~~~~~-l~~~~~~l~~L~~L~l~~c 424 (641)
+ +....+.+++.|++|.+++|..+.- ---.+...|+|.+|++.+|
T Consensus 327 ~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 327 KNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 3 2334556667777777777643311 0012445555666665554
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.37 E-value=2.9e-07 Score=82.61 Aligned_cols=104 Identities=21% Similarity=0.249 Sum_probs=28.7
Q ss_pred CCCCCcceEeecCcCCchhhhhcchHHhh-cCCCCcEEEeccCCcccccccchhhhhhhhhhccCCCccEEEeccCcCcc
Q 006531 137 PRIPKLEELEINNIKNETDIWKSHNELLQ-DICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLV 215 (641)
Q Consensus 137 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 215 (641)
.+..++++|+|+++..-. + ..+. .+.+|+.|++++ +.++.+ +++..+ ++|++|++++|.. .
T Consensus 16 ~n~~~~~~L~L~~n~I~~----I--e~L~~~l~~L~~L~Ls~-N~I~~l------~~l~~L----~~L~~L~L~~N~I-~ 77 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST----I--ENLGATLDKLEVLDLSN-NQITKL------EGLPGL----PRLKTLDLSNNRI-S 77 (175)
T ss_dssp --------------------------S--TT-TT--EEE-TT-S--S--------TT--------TT--EEE--SS----
T ss_pred cccccccccccccccccc----c--cchhhhhcCCCEEECCC-CCCccc------cCccCh----hhhhhcccCCCCC-C
Confidence 345566777777764321 1 1222 456777777776 345554 234555 7777777777765 4
Q ss_pred cccccc-CCCCCccEEEecCCCCCcc---CCCccCCCCccEEEccCCc
Q 006531 216 KLPQSS-LSLCSLREIEICKCSSLVS---FPEVALPSKLKKIRISSCD 259 (641)
Q Consensus 216 ~l~~~~-~~l~~L~~L~L~~~~~l~~---l~~~~~l~~L~~L~l~~~~ 259 (641)
.+.+.+ ..+++|++|++++| .+.+ +..+..+++|+.|++.+|+
T Consensus 78 ~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 78 SISEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred ccccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc
Confidence 444333 24677777777666 3333 3334556666666666665
No 36
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.6e-08 Score=93.05 Aligned_cols=184 Identities=17% Similarity=0.188 Sum_probs=94.3
Q ss_pred CccEEEeccCcCcc-ccccccCCCCCccEEEecCCCCCccCCC-ccCCCCccEEEccCCcCCccCChhhhhccCCCccEE
Q 006531 202 RLEYLRLSNCEGLV-KLPQSSLSLCSLREIEICKCSSLVSFPE-VALPSKLKKIRISSCDALKSLPEEWMCDTNSSLEIL 279 (641)
Q Consensus 202 ~L~~L~L~~~~~~~-~l~~~~~~l~~L~~L~L~~~~~l~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 279 (641)
.|++|||+...+.. .+...+..|.+|+.|.+.|...-..+.. +..-.+|+.|++++|..+++.........|..|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 45666665544321 2222344556666666665532222211 344556666666666666655554444445666666
Q ss_pred EcccccCCccccc---cCCCCCCcEEecccCcccccccccccccccCCCccccccccccccccCCCcccccccCCCchhh
Q 006531 280 YIEGCRSLTYIAA---VQLPSSLKKLQIHRCDNIRTLTVEEGIQCSSGRRYTSSLLEHLHIENCPSLTCIFSKNELPATL 356 (641)
Q Consensus 280 ~l~~~~~l~~~~~---~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l 356 (641)
+++.|...+..-. ...-++|+.|++++|...-... .+.. -.-.+|+|..||+++|..++. +-+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s---h~~t---L~~rcp~l~~LDLSD~v~l~~--------~~~ 331 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS---HLST---LVRRCPNLVHLDLSDSVMLKN--------DCF 331 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh---HHHH---HHHhCCceeeeccccccccCc--------hHH
Confidence 6666643332211 1334566666666664321000 0000 011355677777777766654 100
Q ss_pred hcccccCCCCCccEEEeccCCCch-hhHhhhccCCCccEEEeecccC
Q 006531 357 ESLEVGNLPPSLKSLFVWDCPKLE-SIAERLDNNTSLETISIYNCEN 402 (641)
Q Consensus 357 ~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~ 402 (641)
. .-.-++.|++|.++.|..+. +..-.+...|+|.+|++-+|-.
T Consensus 332 ~---~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 332 Q---EFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred H---HHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 0 11112678888888876542 1122356678888888887743
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.31 E-value=3.8e-08 Score=94.27 Aligned_cols=137 Identities=15% Similarity=0.058 Sum_probs=58.6
Q ss_pred CCccEEEEEcCCccCCcCC------CCCCCcceEEecccccchhhhcccccccccCCCccEEEEecCCCCcccccccccc
Q 006531 462 TSLQHLAIIGGEFPSLEED------GLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVSFPLEDKR 535 (641)
Q Consensus 462 ~~L~~L~l~~~~l~~l~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~ 535 (641)
+.|+.+...+|.+...+.. ...++|+++.+..|......+......+..+++|++|++..+ .++.-. ...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN--tft~eg--s~~ 232 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN--TFTLEG--SVA 232 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc--hhhhHH--HHH
Confidence 4455555555444432221 223455555555554333222111124555666666666552 221110 111
Q ss_pred cCCCCCCCCCcceEeeccCCCccc-----ccccc-cCCCCccEEEecCCCCCcccCC-----CCcccccceEEecCCch
Q 006531 536 LGTALPLPASLTSLRIVDFPNLER-----LSSSI-VDLQNLTSLYLYDCPKLKYFPE-----KGLPSSLLQLDIYRCPL 603 (641)
Q Consensus 536 ~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~-~~l~~L~~L~l~~c~~l~~l~~-----~~~~~~L~~L~l~~c~~ 603 (641)
++.+.+.+++|+.|++++| .++. +...+ ...|+|++|.+.+|..-..-.. ..-.+.|+.|++++|..
T Consensus 233 LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 233 LAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1222334455666666665 2221 11111 2356666666666543322100 01135566666666654
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.31 E-value=2e-07 Score=87.27 Aligned_cols=214 Identities=15% Similarity=0.128 Sum_probs=119.5
Q ss_pred CCCccEEEeccCcchhc-------cCCC---CCCCeeEEEEecCCC--ccccCCChhhHHHH-HhcCcceeeecccccCC
Q 006531 49 FPKLRELHILRCSKLQG-------AFPK---HLPALQMLVIRECEE--LSISITSLPALCKL-VSGCKKVVGRSATDHLG 115 (641)
Q Consensus 49 ~~~L~~L~i~~c~~l~~-------~lp~---~~~~L~~L~l~~~~~--~~~~~~~~~~L~~L-l~~~~~~~~~~~~~~~~ 115 (641)
+.+|+.|.+++...-.| .+|. .|.+|+.+.++.|.- +..-...-|.|..+ +........+..+
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~---- 256 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLL---- 256 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccccccccc----
Confidence 66677777765432111 1121 245677777777653 22222334556666 5444333322221
Q ss_pred CCCceeecCCCccccccCC---cCCCCCCcceEeecCcCCchhhhhcchHHhhcCCCCcEEEeccCCcccccccchhhhh
Q 006531 116 SQNSVVCRDTSNQVFLARP---LKPRIPKLEELEINNIKNETDIWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQ 192 (641)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~ 192 (641)
|.....+..+.......+. ...-..-|++|+|+++.. +. + .....-.|.+|.|+++.+ .+..+ +.
T Consensus 257 pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I-~~---i-DESvKL~Pkir~L~lS~N-~i~~v------~n 324 (490)
T KOG1259|consen 257 PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLI-TQ---I-DESVKLAPKLRRLILSQN-RIRTV------QN 324 (490)
T ss_pred chhhhcCccCCCCCccCCceEEecchHhhhhhccccccch-hh---h-hhhhhhccceeEEecccc-ceeee------hh
Confidence 1112222211111111121 223456688888888743 22 2 223456788888888874 44443 33
Q ss_pred hhhhhccCCCccEEEeccCcCccccccccCCCCCccEEEecCCCCCccCCCccCCCCccEEEccCCcCCccCChhhhhcc
Q 006531 193 QQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEEWMCDT 272 (641)
Q Consensus 193 l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 272 (641)
++.+ ++|+.|++++|.. ..+.-|-..+-+.+.|.+++| .+.++..++.+-+|..|++++|. ++.+..--...+
T Consensus 325 La~L----~~L~~LDLS~N~L-s~~~Gwh~KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~ 397 (490)
T KOG1259|consen 325 LAEL----PQLQLLDLSGNLL-AECVGWHLKLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSSNQ-IEELDEVNHIGN 397 (490)
T ss_pred hhhc----ccceEeecccchh-HhhhhhHhhhcCEeeeehhhh-hHhhhhhhHhhhhheeccccccc-hhhHHHhccccc
Confidence 6666 8888888888754 555556667778888888887 67777777777888888888765 444433222223
Q ss_pred CCCccEEEccccc
Q 006531 273 NSSLEILYIEGCR 285 (641)
Q Consensus 273 ~~~L~~L~l~~~~ 285 (641)
+|.|+++.+.+++
T Consensus 398 LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 398 LPCLETLRLTGNP 410 (490)
T ss_pred ccHHHHHhhcCCC
Confidence 3677777777664
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.17 E-value=2.3e-07 Score=89.06 Aligned_cols=191 Identities=16% Similarity=0.074 Sum_probs=113.4
Q ss_pred CCCCcEEEeccccCCcccc----cccCCCCCccEEEEEcCCccCCc---------------CCCCCCCcceEEecccccc
Q 006531 437 CAKLTTLVICHCERLEALP----KGLHNLTSLQHLAIIGGEFPSLE---------------EDGLPTNLQSLRIWGNMEI 497 (641)
Q Consensus 437 ~~~L~~L~l~~c~~l~~~~----~~~~~l~~L~~L~l~~~~l~~l~---------------~~~~~~~L~~L~l~~~~~~ 497 (641)
+|+|+++++++|-.....+ .-+.++..|++|++.++++.... ..+..+.|+++...+|..-
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 4455555555543222211 12345666777777666554321 1346789999999998765
Q ss_pred hhhhcccccccccCCCccEEEEecCCCCcccccccccccCCCCCCCCCcceEeeccCCCcc-----cccccccCCCCccE
Q 006531 498 WKSMIERGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLE-----RLSSSIVDLQNLTS 572 (641)
Q Consensus 498 ~~~~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~l~~~~~~l~~L~~ 572 (641)
.......+..++..+.|+.+.++.+ .+.. .+......++..+++|+.|++.++ -++ .+...+..+++|+.
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN--~I~~--eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQN--GIRP--EGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecc--cccC--chhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchhee
Confidence 5444332346888899999999984 3322 111111123357899999999994 433 23445678899999
Q ss_pred EEecCCCCCcccCC------CCcccccceEEecCCchhhhhhcccCccccccccccceEEEccEEEE
Q 006531 573 LYLYDCPKLKYFPE------KGLPSSLLQLDIYRCPLMEEKCRKDGGQYWDLLTHIPFVRINFKWVF 633 (641)
Q Consensus 573 L~l~~c~~l~~l~~------~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 633 (641)
|++++|..-..=.. ....++|+.+.+.+|..-.+-...- ...-...+++..+.++++...
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~l-a~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALAL-AACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHH-HHHHhcchhhHHhcCCccccc
Confidence 99999964332110 1125789999999997532111000 011112667777788877764
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.13 E-value=8.2e-06 Score=82.39 Aligned_cols=34 Identities=18% Similarity=0.521 Sum_probs=13.7
Q ss_pred CCccEEEeccCCCchhhHhhhccCCCccEEEeeccc
Q 006531 366 PSLKSLFVWDCPKLESIAERLDNNTSLETISIYNCE 401 (641)
Q Consensus 366 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 401 (641)
++|+.|.+++|..+..+|..+ .++|+.|.+++|.
T Consensus 72 ~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs 105 (426)
T PRK15386 72 NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCP 105 (426)
T ss_pred CCCcEEEccCCCCcccCCchh--hhhhhheEccCcc
Confidence 344444444444443333322 1344444444443
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.10 E-value=2.6e-06 Score=89.25 Aligned_cols=192 Identities=22% Similarity=0.258 Sum_probs=139.5
Q ss_pred EEEeecccCcccccccccCCCccceeeeccCCCccccCCCCCCCC-CCcEEEeccccCCcccccccCCCCCccEEEEEcC
Q 006531 394 TISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCA-KLTTLVICHCERLEALPKGLHNLTSLQHLAIIGG 472 (641)
Q Consensus 394 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~-~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~ 472 (641)
.+....+..... ...+..++.++.|++.+ ..+..++......+ +|+.|+++++. +..+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCC-cccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc
Confidence 466666632222 23355567899999988 56777776666663 89999999976 6667677899999999999999
Q ss_pred CccCCcCCC-CCCCcceEEecccccchhhhcccccccccCCCccEEEEecCCCCcccccccccccCCCCCCCCCcceEee
Q 006531 473 EFPSLEEDG-LPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTALPLPASLTSLRI 551 (641)
Q Consensus 473 ~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 551 (641)
++..++... ..++|+.|++++|.... ++. .......|++|.+++ +.....+... ....++..+.+
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~--l~~---~~~~~~~L~~l~~~~--N~~~~~~~~~-------~~~~~l~~l~l 239 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKISD--LPP---EIELLSALEELDLSN--NSIIELLSSL-------SNLKNLSGLEL 239 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCcccc--Cch---hhhhhhhhhhhhhcC--Ccceecchhh-------hhccccccccc
Confidence 999988775 88999999999986542 222 223455699999988 4333333322 24557777776
Q ss_pred ccCCCcccccccccCCCCccEEEecCCCCCcccCCCCcccccceEEecCCchh
Q 006531 552 VDFPNLERLSSSIVDLQNLTSLYLYDCPKLKYFPEKGLPSSLLQLDIYRCPLM 604 (641)
Q Consensus 552 ~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l 604 (641)
.+ +.+..++..+..++++++|++++ +.+.+++..+-..+++.|+++++...
T Consensus 240 ~~-n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 240 SN-NKLEDLPESIGNLSNLETLDLSN-NQISSISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred CC-ceeeeccchhccccccceecccc-ccccccccccccCccCEEeccCcccc
Confidence 66 56666677778899999999998 57788776555688999999998653
No 42
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.06 E-value=1e-06 Score=95.23 Aligned_cols=61 Identities=23% Similarity=0.288 Sum_probs=35.4
Q ss_pred CCCCcEEEecccccccccccCcCCCCCCCCCCccEEEeccCcchhc----cCCCCCCCeeEEEEecC
Q 006531 20 FPCLETLCFENMQEWEDWIPHGSSQGVEEFPKLRELHILRCSKLQG----AFPKHLPALQMLVIREC 82 (641)
Q Consensus 20 f~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~----~lp~~~~~L~~L~l~~~ 82 (641)
...++.++...+......... ......++.|+.|.+.+|..+.+ .+....+.|+.|++.+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 224 (482)
T KOG1947|consen 160 LANLESLSLSCCGSLLLDKIL--LRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGC 224 (482)
T ss_pred HHHHheeeeecccccccHHHH--HHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCc
Confidence 446666666655432222110 02233478888888888876542 22335778888888874
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.92 E-value=5.6e-07 Score=91.68 Aligned_cols=126 Identities=23% Similarity=0.236 Sum_probs=65.6
Q ss_pred CCccEEEeccCCCchhhHhhhccCCCccEEEeecccCcccccccccCCCccceeeeccCCCccccCCCCCCCCCCcEEEe
Q 006531 366 PSLKSLFVWDCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVI 445 (641)
Q Consensus 366 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l 445 (641)
..|..++++.+ .+..+|..+..++ |+.|.+++| +++.+|..++..+.|..|+++. +.+..++.....+.+|+.|.+
T Consensus 121 ~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~-nei~slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 121 EALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQLGYLTSLRDLNV 196 (722)
T ss_pred hHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhh-hhhhhchHHhhhHHHHHHHHH
Confidence 34555555553 3444554444443 555555555 5555555555555566665555 344555555555555555555
Q ss_pred ccccCCcccccccCCCCCccEEEEEcCCccCCcCC-CCCCCcceEEecccccc
Q 006531 446 CHCERLEALPKGLHNLTSLQHLAIIGGEFPSLEED-GLPTNLQSLRIWGNMEI 497 (641)
Q Consensus 446 ~~c~~l~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-~~~~~L~~L~l~~~~~~ 497 (641)
..|. +..+|..+..| .|..||+++|++..+|.. -.+..|++|.|.+|+..
T Consensus 197 rRn~-l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 197 RRNH-LEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhh-hhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence 5544 33444444432 355555555555555443 34555555555555443
No 44
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.89 E-value=3.9e-06 Score=90.62 Aligned_cols=116 Identities=23% Similarity=0.347 Sum_probs=52.7
Q ss_pred hcCCCCcEEEeccCCcccccccchhhhhhhhhhccCCCccEEEeccC-cCccccc----cccCCCCCccEEEecCCCCCc
Q 006531 165 QDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNC-EGLVKLP----QSSLSLCSLREIEICKCSSLV 239 (641)
Q Consensus 165 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~l~----~~~~~l~~L~~L~L~~~~~l~ 239 (641)
..++.|+.|.+.+|..+.. .++..+...+++|+.|++++| ......+ .....+++|+.|++++|..++
T Consensus 185 ~~~~~L~~l~l~~~~~~~~-------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is 257 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITD-------DSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT 257 (482)
T ss_pred hhCchhhHhhhcccccCCh-------hhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC
Confidence 3456666666666655554 123333444566666666652 2111111 122234555555555554333
Q ss_pred cCCC---ccCCCCccEEEccCCcCCccCChhhhhccCCCccEEEcccccCC
Q 006531 240 SFPE---VALPSKLKKIRISSCDALKSLPEEWMCDTNSSLEILYIEGCRSL 287 (641)
Q Consensus 240 ~l~~---~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l 287 (641)
+... ...+++|++|.+.+|..+++..-......+++|++|++++|..+
T Consensus 258 d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 258 DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 3211 11245555555555544333333333333455555555555443
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.89 E-value=1.8e-05 Score=57.99 Aligned_cols=35 Identities=29% Similarity=0.244 Sum_probs=13.9
Q ss_pred CCccEEEeccCcCccccccccCCCCCccEEEecCC
Q 006531 201 CRLEYLRLSNCEGLVKLPQSSLSLCSLREIEICKC 235 (641)
Q Consensus 201 ~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~ 235 (641)
++|++|++++|....-.+..+..+++|++|++++|
T Consensus 25 ~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 25 PNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 44444444444332222223444444444444443
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.83 E-value=3e-05 Score=56.74 Aligned_cols=57 Identities=26% Similarity=0.361 Sum_probs=30.7
Q ss_pred CCccEEEeccCcCccccc-cccCCCCCccEEEecCCCCCccCCC--ccCCCCccEEEccCCc
Q 006531 201 CRLEYLRLSNCEGLVKLP-QSSLSLCSLREIEICKCSSLVSFPE--VALPSKLKKIRISSCD 259 (641)
Q Consensus 201 ~~L~~L~L~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~l~~l~~--~~~l~~L~~L~l~~~~ 259 (641)
|+|++|++++|.. ..+| ..+..+++|++|++++| .+..+++ +..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l-~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKL-TEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTE-SEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCC-CccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3555566665543 3333 35556666666666655 3444443 4556666666666553
No 47
>PLN03150 hypothetical protein; Provisional
Probab=97.72 E-value=7.7e-05 Score=82.26 Aligned_cols=108 Identities=19% Similarity=0.116 Sum_probs=70.9
Q ss_pred CccEEEeccCcCccccccccCCCCCccEEEecCCCCCccCCC-ccCCCCccEEEccCCcCCccCChhhhhccCCCccEEE
Q 006531 202 RLEYLRLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVSFPE-VALPSKLKKIRISSCDALKSLPEEWMCDTNSSLEILY 280 (641)
Q Consensus 202 ~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~l~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 280 (641)
.++.|+|+++...+.+|..+..+++|+.|+|++|...+.+|. ++.+++|+.|++++|.....+|..+... ++|+.|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L--~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL--TSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcC--CCCCEEE
Confidence 367777777776667777777777888888877755556664 6677778888887776555667666554 7788888
Q ss_pred cccccCCcccccc--CCCCCCcEEecccCcccc
Q 006531 281 IEGCRSLTYIAAV--QLPSSLKKLQIHRCDNIR 311 (641)
Q Consensus 281 l~~~~~l~~~~~~--~~~~~L~~L~l~~c~~l~ 311 (641)
+++|.....+|.. ....++..+++.++..+.
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 7776544445433 222345566666654433
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.70 E-value=2.7e-05 Score=85.64 Aligned_cols=110 Identities=20% Similarity=0.184 Sum_probs=65.6
Q ss_pred CCCCcceEeecCcCCchhhhhcchHHhhcCCCCcEEEeccCCcccccccchhhhhhhhhhccCCCccEEEeccCcCcccc
Q 006531 138 RIPKLEELEINNIKNETDIWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKL 217 (641)
Q Consensus 138 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l 217 (641)
.-.+|+.|+++|...+..-|... .-..+|+|+.|.+.|-.... +.+.++...||+|+.||+++++. ..+
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~k--ig~~LPsL~sL~i~~~~~~~--------~dF~~lc~sFpNL~sLDIS~TnI-~nl 188 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKK--IGTMLPSLRSLVISGRQFDN--------DDFSQLCASFPNLRSLDISGTNI-SNL 188 (699)
T ss_pred HHHhhhhcCccccchhhccHHHH--HhhhCcccceEEecCceecc--------hhHHHHhhccCccceeecCCCCc-cCc
Confidence 45677777777765554433222 22457777777777632211 23666667777777777777764 333
Q ss_pred ccccCCCCCccEEEecCCCCCc--cCCCccCCCCccEEEccCCc
Q 006531 218 PQSSLSLCSLREIEICKCSSLV--SFPEVALPSKLKKIRISSCD 259 (641)
Q Consensus 218 ~~~~~~l~~L~~L~L~~~~~l~--~l~~~~~l~~L~~L~l~~~~ 259 (641)
.+++.+++|+.|.+.+-..-. ++-.+..+++|+.||++.-.
T Consensus 189 -~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 189 -SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred -HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 566777777777776543221 12234557777777777644
No 49
>PLN03150 hypothetical protein; Provisional
Probab=97.69 E-value=6.3e-05 Score=82.95 Aligned_cols=104 Identities=19% Similarity=0.250 Sum_probs=49.7
Q ss_pred ccEEEeecccCcccccccccCCCccceeeeccCCCccccCCCCCCCCCCcEEEeccccCCcccccccCCCCCccEEEEEc
Q 006531 392 LETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEALPKGLHNLTSLQHLAIIG 471 (641)
Q Consensus 392 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~ 471 (641)
++.|+++++.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+.++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 44455554433334444455555555555555433334444444455555555555554445555555555555555555
Q ss_pred CCcc-CCcCC--CCCCCcceEEecccc
Q 006531 472 GEFP-SLEED--GLPTNLQSLRIWGNM 495 (641)
Q Consensus 472 ~~l~-~l~~~--~~~~~L~~L~l~~~~ 495 (641)
|.+. .+|.. ....++..+++.+|+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 4443 12211 112344455555553
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.62 E-value=4.4e-05 Score=83.98 Aligned_cols=134 Identities=14% Similarity=0.127 Sum_probs=90.0
Q ss_pred cCCCCcEEEeccCCcccccccchhhhhhhhhhccCCCccEEEeccCcCc-cccccccCCCCCccEEEecCCCCCccCCCc
Q 006531 166 DICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGL-VKLPQSSLSLCSLREIEICKCSSLVSFPEV 244 (641)
Q Consensus 166 ~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~-~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~ 244 (641)
+-.+|++|+++|...+.. .|...+...+|+|++|.+++-... .++.....++++|..||++++ .+.++..+
T Consensus 120 sr~nL~~LdI~G~~~~s~-------~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GI 191 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSN-------GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLSGI 191 (699)
T ss_pred HHHhhhhcCccccchhhc-------cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcHHH
Confidence 456899999988554433 456667777899999999875432 233445568889999999987 57777667
Q ss_pred cCCCCccEEEccCCcCCccCChhhhhccCCCccEEEcccccCCccc-------cccCCCCCCcEEecccCc
Q 006531 245 ALPSKLKKIRISSCDALKSLPEEWMCDTNSSLEILYIEGCRSLTYI-------AAVQLPSSLKKLQIHRCD 308 (641)
Q Consensus 245 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-------~~~~~~~~L~~L~l~~c~ 308 (641)
+.+++|+.|.+.+-. +.....-.....+.+|+.||++.-...... .....+|+|+.|+.++..
T Consensus 192 S~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred hccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 788899999888755 332222122223488999999875433321 122557888888888743
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.60 E-value=9e-06 Score=85.44 Aligned_cols=215 Identities=21% Similarity=0.275 Sum_probs=105.2
Q ss_pred CCccEEEeccCCCchhhHhhhccCCCccEEEeecccCcccccccccCCCccceeeeccCCCccccCCCCCCCCCCcEEEe
Q 006531 366 PSLKSLFVWDCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVI 445 (641)
Q Consensus 366 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l 445 (641)
.+++.|++.++ .+..+...+..+++|++|++++| .++.+. .+..++.|+.|++.+| .+..+.. +..++.|+.+++
T Consensus 95 ~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~~N-~i~~~~~-~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLSGN-LISDISG-LESLKSLKLLDL 169 (414)
T ss_pred cceeeeecccc-chhhcccchhhhhcchheecccc-cccccc-chhhccchhhheeccC-cchhccC-CccchhhhcccC
Confidence 56666666664 34433332555667777777766 444442 3445555666666663 3333332 122456666666
Q ss_pred ccccCCcccccc-cCCCCCccEEEEEcCCccCCcCCCCCCCcceEEecccccchhhhcccccccccCCC--ccEEEEecC
Q 006531 446 CHCERLEALPKG-LHNLTSLQHLAIIGGEFPSLEEDGLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSS--LRELIIQGC 522 (641)
Q Consensus 446 ~~c~~l~~~~~~-~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~c 522 (641)
.+|.... +... ...+.+++.+++.+|.+..+........+..+++.++...... .+..+.. |+.+++++
T Consensus 170 ~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~------~l~~~~~~~L~~l~l~~- 241 (414)
T KOG0531|consen 170 SYNRIVD-IENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLE------GLNELVMLHLRELYLSG- 241 (414)
T ss_pred Ccchhhh-hhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceecc------CcccchhHHHHHHhccc-
Confidence 6655222 2211 3555666666666666655544444445555555554332110 1112222 66777766
Q ss_pred CCCcccccccccccCCCCCCCCCcceEeeccCCCcccccccccCCCCccEEEecCCCCCcc---cCC--CCcccccceEE
Q 006531 523 DDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTSLYLYDCPKLKY---FPE--KGLPSSLLQLD 597 (641)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~---l~~--~~~~~~L~~L~ 597 (641)
+.+...+... .....+..+++.+ +.+..+.. +...+.+..+...++..... ... ....+.++.++
T Consensus 242 -n~i~~~~~~~-------~~~~~l~~l~~~~-n~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (414)
T KOG0531|consen 242 -NRISRSPEGL-------ENLKNLPVLDLSS-NRISNLEG-LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLT 311 (414)
T ss_pred -Cccccccccc-------cccccccccchhh-cccccccc-ccccchHHHhccCcchhcchhhhhccccccccccccccc
Confidence 4444443222 2445666666665 33332221 13344455555555332211 111 12235666666
Q ss_pred ecCCch
Q 006531 598 IYRCPL 603 (641)
Q Consensus 598 l~~c~~ 603 (641)
+..++.
T Consensus 312 ~~~~~~ 317 (414)
T KOG0531|consen 312 LELNPI 317 (414)
T ss_pred cccCcc
Confidence 666664
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=8.8e-05 Score=70.01 Aligned_cols=195 Identities=15% Similarity=0.121 Sum_probs=94.6
Q ss_pred hhhhhccCCCccEEEeccCcCc--cccccccCCCCCccEEEecCCCCCccCCCc-cCCCCccEEEccCCcCCccCChhhh
Q 006531 193 QQQLCELSCRLEYLRLSNCEGL--VKLPQSSLSLCSLREIEICKCSSLVSFPEV-ALPSKLKKIRISSCDALKSLPEEWM 269 (641)
Q Consensus 193 l~~l~~~~~~L~~L~L~~~~~~--~~l~~~~~~l~~L~~L~L~~~~~l~~l~~~-~~l~~L~~L~l~~~~~l~~~~~~~~ 269 (641)
...++..++.++.+++.+|.+. .++...+.++|.|+.|+++.|..-..+... .-..+|+.|-+.+.. +.--.....
T Consensus 63 ~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~-L~w~~~~s~ 141 (418)
T KOG2982|consen 63 VMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG-LSWTQSTSS 141 (418)
T ss_pred HHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC-CChhhhhhh
Confidence 4444555677777777777653 133344567777888888766433332222 234567777776654 211111111
Q ss_pred hccCCCccEEEcccccCCccccccCCCCCCcEEecccCcccccccccccccccCCCccccccccccccccCCCccccccc
Q 006531 270 CDTNSSLEILYIEGCRSLTYIAAVQLPSSLKKLQIHRCDNIRTLTVEEGIQCSSGRRYTSSLLEHLHIENCPSLTCIFSK 349 (641)
Q Consensus 270 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 349 (641)
....|.+++|.++.+ +++.+.+.... .+.+ .+.+.++.+.+|...
T Consensus 142 l~~lP~vtelHmS~N-------------~~rq~n~Dd~c-~e~~---------------s~~v~tlh~~~c~~~------ 186 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDN-------------SLRQLNLDDNC-IEDW---------------STEVLTLHQLPCLEQ------ 186 (418)
T ss_pred hhcchhhhhhhhccc-------------hhhhhcccccc-cccc---------------chhhhhhhcCCcHHH------
Confidence 222366666666654 12222222100 0000 011334444343211
Q ss_pred CCCchhhhcccccCCCCCccEEEeccCCCch-hhHhhhccCCCccEEEeecccCccccc--ccccCCCccceeeeccCCC
Q 006531 350 NELPATLESLEVGNLPPSLKSLFVWDCPKLE-SIAERLDNNTSLETISIYNCENLKILP--SGLHNLRQLRGITIQSCAN 426 (641)
Q Consensus 350 ~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~c~~ 426 (641)
.|.+....+.++|++..+-+-.|+.-+ .-......++.+..|.++.+ .+.+.. ..+.++++|+.|++..++.
T Consensus 187 ----~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 187 ----LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred ----HHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcc
Confidence 111111244455777777776664321 11233445666666777666 444432 2356667777777766554
Q ss_pred cc
Q 006531 427 LV 428 (641)
Q Consensus 427 l~ 428 (641)
.+
T Consensus 262 ~d 263 (418)
T KOG2982|consen 262 SD 263 (418)
T ss_pred cc
Confidence 44
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.35 E-value=0.00026 Score=47.42 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=23.9
Q ss_pred CCccEEEeccCcCccccccccCCCCCccEEEecCCCCCccCC
Q 006531 201 CRLEYLRLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVSFP 242 (641)
Q Consensus 201 ~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~l~ 242 (641)
++|++|++++|.+ ..+|..+++|++|+.|++++| .+.+++
T Consensus 1 ~~L~~L~l~~N~i-~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQI-TDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCC-cccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 3566777776655 456655667777777777766 344444
No 54
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.32 E-value=3.4e-05 Score=81.09 Aligned_cols=214 Identities=19% Similarity=0.200 Sum_probs=122.3
Q ss_pred CCccEEEeccCCCchhhHhhhccCCCccEEEeecccCcccccccccCCCccceeeeccCCCccccCCCCCCCCCCcEEEe
Q 006531 366 PSLKSLFVWDCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVI 445 (641)
Q Consensus 366 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l 445 (641)
..++.+.+..+ .+...-..+..+.+|+.+++.++ .+..+...+..+++|++|+++++ .++.+.. ...++.|+.|++
T Consensus 72 ~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchh-hhhhhhcccccccceeeeecccc-chhhcccchhhhhcchheecccc-ccccccc-hhhccchhhhee
Confidence 44555555543 23332333666777888888877 55555444666778888888874 4444432 223345777777
Q ss_pred ccccCCcccccccCCCCCccEEEEEcCCccCCcC--CCCCCCcceEEecccccchhhhcccccccccCCCccEEEEecCC
Q 006531 446 CHCERLEALPKGLHNLTSLQHLAIIGGEFPSLEE--DGLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCD 523 (641)
Q Consensus 446 ~~c~~l~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~ 523 (641)
.+|. +..+ ..+..+++|+.+++++|.+..++. ...+.+++.+++++|...... .+..+..+..+++..
T Consensus 148 ~~N~-i~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~------~~~~~~~l~~~~l~~-- 217 (414)
T KOG0531|consen 148 SGNL-ISDI-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE------GLDLLKKLVLLSLLD-- 217 (414)
T ss_pred ccCc-chhc-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc------chHHHHHHHHhhccc--
Confidence 7765 3333 234457777777777777777766 366777777777776543311 222333444445544
Q ss_pred CCcccccccccccCCCCCCCCC--cceEeeccCCCcccccccccCCCCccEEEecCCCCCcccCCCCcccccceEEecCC
Q 006531 524 DDMVSFPLEDKRLGTALPLPAS--LTSLRIVDFPNLERLSSSIVDLQNLTSLYLYDCPKLKYFPEKGLPSSLLQLDIYRC 601 (641)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c 601 (641)
+.+..+..-. .... |+.+++.+ +.+..++..+..+..+..+++.+ +.+..+......+.+..+....+
T Consensus 218 n~i~~~~~l~--------~~~~~~L~~l~l~~-n~i~~~~~~~~~~~~l~~l~~~~-n~~~~~~~~~~~~~~~~~~~~~~ 287 (414)
T KOG0531|consen 218 NKISKLEGLN--------ELVMLHLRELYLSG-NRISRSPEGLENLKNLPVLDLSS-NRISNLEGLERLPKLSELWLNDN 287 (414)
T ss_pred ccceeccCcc--------cchhHHHHHHhccc-Cccccccccccccccccccchhh-ccccccccccccchHHHhccCcc
Confidence 3443332211 2222 78888888 56666655557788888888887 34444433223344555555555
Q ss_pred ch
Q 006531 602 PL 603 (641)
Q Consensus 602 ~~ 603 (641)
+.
T Consensus 288 ~~ 289 (414)
T KOG0531|consen 288 KL 289 (414)
T ss_pred hh
Confidence 43
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.24 E-value=0.00039 Score=46.58 Aligned_cols=39 Identities=23% Similarity=0.430 Sum_probs=23.0
Q ss_pred CCcEEEeccccCCcccccccCCCCCccEEEEEcCCccCCc
Q 006531 439 KLTTLVICHCERLEALPKGLHNLTSLQHLAIIGGEFPSLE 478 (641)
Q Consensus 439 ~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~l~~l~ 478 (641)
+|++|++++|. ++.+|..+++|++|++|++++|.+.+++
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 56666666654 4456555666666666666666665543
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.19 E-value=9.8e-06 Score=85.13 Aligned_cols=123 Identities=24% Similarity=0.269 Sum_probs=83.3
Q ss_pred CccEEEeccCCCchhhHhhhccCCCccEEEeecccCcccccccccCCCccceeeeccCCCccccCCCC-CCCCCCcEEEe
Q 006531 367 SLKSLFVWDCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGG-LPCAKLTTLVI 445 (641)
Q Consensus 367 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~l 445 (641)
.|...+.++ +.+..+...+.-++.|+.|++++| +++++. .+..|+.|+.|++++ +.+..+|... ..+ +|+.|.+
T Consensus 165 ~L~~a~fsy-N~L~~mD~SLqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSY-NRLVLMDESLQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hHhhhhcch-hhHHhHHHHHHHHHHhhhhccchh-hhhhhH-HHHhccccccccccc-chhccccccchhhh-hheeeee
Confidence 455555555 345555566666778888888888 444442 677788888888888 4566666533 334 5888888
Q ss_pred ccccCCcccccccCCCCCccEEEEEcCCccC---CcCCCCCCCcceEEeccccc
Q 006531 446 CHCERLEALPKGLHNLTSLQHLAIIGGEFPS---LEEDGLPTNLQSLRIWGNME 496 (641)
Q Consensus 446 ~~c~~l~~~~~~~~~l~~L~~L~l~~~~l~~---l~~~~~~~~L~~L~l~~~~~ 496 (641)
++|. ++.+ .++.++.+|+-||+++|-+.. +.....+..|++|+|.+|+.
T Consensus 240 rnN~-l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNA-LTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccH-HHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 8875 4433 357788888889998865543 33345567888888888864
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.00054 Score=64.85 Aligned_cols=131 Identities=14% Similarity=0.171 Sum_probs=68.7
Q ss_pred cCCCccEEEeecccCccc---ccccccCCCccceeeeccCCCccccCCCCCCCCCCcEEEeccccCC-cccccccCCCCC
Q 006531 388 NNTSLETISIYNCENLKI---LPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERL-EALPKGLHNLTS 463 (641)
Q Consensus 388 ~l~~L~~L~l~~~~~~~~---l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~l~~ 463 (641)
.++.++.+++.+| .+.+ +...+.++|.|+.|+++.|+--..+.....+..+|++|.+.+...- +.....+..+|.
T Consensus 69 ~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred Hhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 4566777777777 3333 2334567777888877765433333332245557777777665422 222234556777
Q ss_pred ccEEEEEcCCccCCcCC-----CCCCCcceEEecccccchhhhcccccccccCCCccEEEEec
Q 006531 464 LQHLAIIGGEFPSLEED-----GLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQG 521 (641)
Q Consensus 464 L~~L~l~~~~l~~l~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 521 (641)
+++|+++.|.+..+... ..-+.+++|+.-.|.... +.........+|++..+.+..
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~--w~~~~~l~r~Fpnv~sv~v~e 208 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL--WLNKNKLSRIFPNVNSVFVCE 208 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH--HHHHHhHHhhcccchheeeec
Confidence 77777777644433221 122455555555554321 000001123456666666655
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.95 E-value=5.1e-06 Score=87.19 Aligned_cols=124 Identities=21% Similarity=0.189 Sum_probs=83.6
Q ss_pred CccEEEeecccCcccccccccCCCccceeeeccCCCccccCCCCCCCCCCcEEEeccccCCccccc-ccCCCCCccEEEE
Q 006531 391 SLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEALPK-GLHNLTSLQHLAI 469 (641)
Q Consensus 391 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~l~~L~~L~l 469 (641)
.|.+.++++| .+..+-..+.-++.|+.|+++.|. +..+. ....++.|++|++++|. ++.+|. +...+. |+.|.+
T Consensus 165 ~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYN-RLVLMDESLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchh-hHHhHHHHHHHHHHhhhhccchhh-hhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeee
Confidence 4666677776 555554556667788888888853 44333 44557788888888876 556654 334444 888888
Q ss_pred EcCCccCCcCCCCCCCcceEEecccccchhhhcccccccccCCCccEEEEecC
Q 006531 470 IGGEFPSLEEDGLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGC 522 (641)
Q Consensus 470 ~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c 522 (641)
.+|.++.+.+...+.+|+.||+++|-.....-.. .+..+..|+.|.+.|+
T Consensus 240 rnN~l~tL~gie~LksL~~LDlsyNll~~hseL~---pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 240 RNNALTTLRGIENLKSLYGLDLSYNLLSEHSELE---PLWSLSSLIVLWLEGN 289 (1096)
T ss_pred cccHHHhhhhHHhhhhhhccchhHhhhhcchhhh---HHHHHHHHHHHhhcCC
Confidence 8888888878888888888888887443322111 3455667788888773
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.67 E-value=0.00085 Score=62.70 Aligned_cols=211 Identities=16% Similarity=0.014 Sum_probs=102.1
Q ss_pred CCccEEEeccCCCchhhH----hhhccCCCccEEEeecccCc----------ccccccccCCCccceeeeccCCCccccC
Q 006531 366 PSLKSLFVWDCPKLESIA----ERLDNNTSLETISIYNCENL----------KILPSGLHNLRQLRGITIQSCANLVSFP 431 (641)
Q Consensus 366 ~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~----------~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 431 (641)
..+..+++++|..-+... ..+.+-.+|+..+++.-..- .-+...+.+||.|++++++.|-.-...+
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 567788888876544333 33444566666666654211 1122345667777777777754333333
Q ss_pred C----CCCCCCCCcEEEeccccCCc----cccc---------ccCCCCCccEEEEEcCCccCCcCC------CCCCCcce
Q 006531 432 E----GGLPCAKLTTLVICHCERLE----ALPK---------GLHNLTSLQHLAIIGGEFPSLEED------GLPTNLQS 488 (641)
Q Consensus 432 ~----~~~~~~~L~~L~l~~c~~l~----~~~~---------~~~~l~~L~~L~l~~~~l~~l~~~------~~~~~L~~ 488 (641)
. .......|+.|.+++|.... .+.. ....-|.|+.+....|++...+.. .+-.+|++
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~ 189 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE 189 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence 2 12233467777777665221 1110 112345677666666665543221 11246677
Q ss_pred EEecccccchhhhcc-cccccccCCCccEEEEecCCCCcccccccccccCCCCCCCCCcceEeeccCCCcccc----ccc
Q 006531 489 LRIWGNMEIWKSMIE-RGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERL----SSS 563 (641)
Q Consensus 489 L~l~~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l----~~~ 563 (641)
+.+..|..-...+.- .-..+..+.+|+.|++..+ ..+-... ...+.+...++.|+.|.+.+|---..- ...
T Consensus 190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN--tft~~gS--~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN--TFTLEGS--RYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred EEeeecCcCcchhHHHHHHHHHHhCcceeeecccc--chhhhhH--HHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 777666543321100 0013445667777777663 2221111 111222234455677777776222111 111
Q ss_pred c--cCCCCccEEEecCCCC
Q 006531 564 I--VDLQNLTSLYLYDCPK 580 (641)
Q Consensus 564 ~--~~l~~L~~L~l~~c~~ 580 (641)
+ ...|+|+.|-..++..
T Consensus 266 f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred hhhhcCCCccccccchhhh
Confidence 1 2456777777766544
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.23 E-value=0.01 Score=53.35 Aligned_cols=84 Identities=23% Similarity=0.170 Sum_probs=45.1
Q ss_pred CCCCcEEEeccccCCcccccccCCCCCccEEEEEcCCccCC---cCCCCCCCcceEEecccccchhhhcccccccccCCC
Q 006531 437 CAKLTTLVICHCERLEALPKGLHNLTSLQHLAIIGGEFPSL---EEDGLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSS 513 (641)
Q Consensus 437 ~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~l~~l---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~ 513 (641)
++.|.+|.+.+|.....-|.--..+++|+.|.+.+|.+..+ .....||.|++|.+-+|+..... ......+..+|+
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~-~YR~yvl~klp~ 141 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKK-NYRLYVLYKLPS 141 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhccc-CceeEEEEecCc
Confidence 33555555554442222222222345566666666544443 33456777788877777643311 111135678888
Q ss_pred ccEEEEec
Q 006531 514 LRELIIQG 521 (641)
Q Consensus 514 L~~L~l~~ 521 (641)
|+.||+.+
T Consensus 142 l~~LDF~k 149 (233)
T KOG1644|consen 142 LRTLDFQK 149 (233)
T ss_pred ceEeehhh
Confidence 88888876
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.06 E-value=0.0017 Score=60.77 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=60.6
Q ss_pred hcCCCCcEEEeccCCcccccccchhhhhhhhhhccCCCccEEEeccC--cCccccccccCCCCCccEEEecCCC--CCcc
Q 006531 165 QDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNC--EGLVKLPQSSLSLCSLREIEICKCS--SLVS 240 (641)
Q Consensus 165 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~--~~~~~l~~~~~~l~~L~~L~L~~~~--~l~~ 240 (641)
..+..|+.|++.++. ++.+ ..+..+ |+|+.|.++.| +....++.....+++|++|++++|. .+.+
T Consensus 40 d~~~~le~ls~~n~g-ltt~------~~~P~L----p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst 108 (260)
T KOG2739|consen 40 DEFVELELLSVINVG-LTTL------TNFPKL----PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST 108 (260)
T ss_pred ccccchhhhhhhccc-eeec------ccCCCc----chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc
Confidence 455666666666543 2222 123334 77888888877 5445555555566888888888774 1334
Q ss_pred CCCccCCCCccEEEccCCcCCccCCh--hhhhccCCCccEEEcccc
Q 006531 241 FPEVALPSKLKKIRISSCDALKSLPE--EWMCDTNSSLEILYIEGC 284 (641)
Q Consensus 241 l~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~~~L~~L~l~~~ 284 (641)
+.+...+.+|..|++.+|.... +-. ......+++|++|+-...
T Consensus 109 l~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 109 LRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred cchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 4556667777777777775332 211 111122366666655443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.04 E-value=0.017 Score=51.99 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=49.6
Q ss_pred CCcEEEeccccCCcccccccCCCCCccEEEEEcCCccCCcCC--CCCCCcceEEecccccchhhhcccccccccCCCccE
Q 006531 439 KLTTLVICHCERLEALPKGLHNLTSLQHLAIIGGEFPSLEED--GLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRE 516 (641)
Q Consensus 439 ~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~ 516 (641)
+...+++++|... .+ ..+..++.|.+|.+.+|++..+... ...|+|..|.+.+|+...-.=. ..+..+|.|++
T Consensus 43 ~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl---~pLa~~p~L~~ 117 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL---DPLASCPKLEY 117 (233)
T ss_pred ccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc---chhccCCccce
Confidence 5566677666522 22 2366778888888888888776543 4567788888887764431111 24667777777
Q ss_pred EEEec
Q 006531 517 LIIQG 521 (641)
Q Consensus 517 L~l~~ 521 (641)
|.+-+
T Consensus 118 Ltll~ 122 (233)
T KOG1644|consen 118 LTLLG 122 (233)
T ss_pred eeecC
Confidence 77776
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.00 E-value=0.011 Score=55.44 Aligned_cols=142 Identities=15% Similarity=0.126 Sum_probs=73.8
Q ss_pred CCCcceEeecCcCCchhhhhcchHHhhcCCCCcEEEeccCCcccccccchhhhhhhhh---hccCCCccEEEeccCcCcc
Q 006531 139 IPKLEELEINNIKNETDIWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQL---CELSCRLEYLRLSNCEGLV 215 (641)
Q Consensus 139 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l---~~~~~~L~~L~L~~~~~~~ 215 (641)
+..+..++|+|+..-+.-.......+.+-.+|+..++++. .+........+.+.-+ -..||+|+..++++|-+..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~--ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA--FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh--hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 6677888888887655411111123344567777777752 1111111111112211 1357888888888876644
Q ss_pred cccc----ccCCCCCccEEEecCCCCCccCCC---------------ccCCCCccEEEccCCcCCccCChhhhhccC---
Q 006531 216 KLPQ----SSLSLCSLREIEICKCSSLVSFPE---------------VALPSKLKKIRISSCDALKSLPEEWMCDTN--- 273 (641)
Q Consensus 216 ~l~~----~~~~l~~L~~L~L~~~~~l~~l~~---------------~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~--- 273 (641)
..|+ .+++-..|++|.+.+|. ++.+.. ...-|.|+++.+..|+ +...+.......+
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~sh 184 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLESH 184 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHhh
Confidence 4444 45567788888888774 222111 1235666666666654 3333332221111
Q ss_pred CCccEEEcccc
Q 006531 274 SSLEILYIEGC 284 (641)
Q Consensus 274 ~~L~~L~l~~~ 284 (641)
.+|+++.+.++
T Consensus 185 ~~lk~vki~qN 195 (388)
T COG5238 185 ENLKEVKIQQN 195 (388)
T ss_pred cCceeEEeeec
Confidence 35666665553
No 64
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.00058 Score=61.14 Aligned_cols=68 Identities=16% Similarity=0.345 Sum_probs=49.2
Q ss_pred CCCccCCCCcEEEecccccccccccCcCCCCCCCCCCccEEEeccCcchhc-cCC--CCCCCeeEEEEecCCCc
Q 006531 15 DSPIPFPCLETLCFENMQEWEDWIPHGSSQGVEEFPKLRELHILRCSKLQG-AFP--KHLPALQMLVIRECEEL 85 (641)
Q Consensus 15 ~~~~~f~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~-~lp--~~~~~L~~L~l~~~~~~ 85 (641)
+-++.++.+++|.+.+|..+.+|... ...+..|+|+.|+|++|+.+++ .+. ..+++|+.|.+.+-+.+
T Consensus 119 e~L~~l~~i~~l~l~~ck~~dD~~L~---~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 119 EHLRDLRSIKSLSLANCKYFDDWCLE---RLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HHHhccchhhhheeccccchhhHHHH---HhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 44677888888888888888888776 5556788888888888887653 111 14677777777775544
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.61 E-value=0.00095 Score=55.86 Aligned_cols=109 Identities=17% Similarity=0.238 Sum_probs=65.9
Q ss_pred CccEEEeccCCCc--hhhHhhhccCCCccEEEeecccCccccccccc-CCCccceeeeccCCCccccCCCCCCCCCCcEE
Q 006531 367 SLKSLFVWDCPKL--ESIAERLDNNTSLETISIYNCENLKILPSGLH-NLRQLRGITIQSCANLVSFPEGGLPCAKLTTL 443 (641)
Q Consensus 367 ~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~-~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L 443 (641)
.+..+++++|..+ .+.+..+.....|+..++++| .++++|..+. .++.++.|++.+ +.+.++|..+..+|.|+.+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhc
Confidence 4666777776443 233444555566777777777 6666665543 344667777776 4566666666666777777
Q ss_pred EeccccCCcccccccCCCCCccEEEEEcCCccCCc
Q 006531 444 VICHCERLEALPKGLHNLTSLQHLAIIGGEFPSLE 478 (641)
Q Consensus 444 ~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~l~~l~ 478 (641)
+++.|+ +...|..+..+.+|-.|+..+|....++
T Consensus 106 Nl~~N~-l~~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 106 NLRFNP-LNAEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred ccccCc-cccchHHHHHHHhHHHhcCCCCccccCc
Confidence 777765 4444544444666666666555554443
No 66
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.93 E-value=0.0023 Score=53.61 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=15.1
Q ss_pred CcceEeeccCCCcccccccccCCCCccEEEecCC
Q 006531 545 SLTSLRIVDFPNLERLSSSIVDLQNLTSLYLYDC 578 (641)
Q Consensus 545 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c 578 (641)
.++.+++.+ +.+..+|.++..++.|+.|++++|
T Consensus 78 t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 78 TATTLNLAN-NEISDVPEELAAMPALRSLNLRFN 110 (177)
T ss_pred hhhhhhcch-hhhhhchHHHhhhHHhhhcccccC
Confidence 444444444 344444444444444444444443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.72 E-value=0.0067 Score=57.16 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=66.0
Q ss_pred CCCccEEEeccCcchhccCCCCCCCeeEEEEecCCCcc-ccCCChhhHHHH-HhcCcceeeecccccCCCCCceeecCCC
Q 006531 49 FPKLRELHILRCSKLQGAFPKHLPALQMLVIRECEELS-ISITSLPALCKL-VSGCKKVVGRSATDHLGSQNSVVCRDTS 126 (641)
Q Consensus 49 ~~~L~~L~i~~c~~l~~~lp~~~~~L~~L~l~~~~~~~-~~~~~~~~L~~L-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (641)
+.+.++|+.-||+--...+-..+|.|++|.|+-|..-. ..+..|.+|++| |..+.+..+.+..+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~Y-------------- 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEY-------------- 83 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHH--------------
Confidence 44556666666642221333457788888888776544 667788999999 98888877665543
Q ss_pred ccccccCCcCCCCCCcceEeecCcCCchhhhhcch----HHhhcCCCCcEEE
Q 006531 127 NQVFLARPLKPRIPKLEELEINNIKNETDIWKSHN----ELLQDICSLKRLT 174 (641)
Q Consensus 127 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~----~~~~~~~~L~~L~ 174 (641)
+.++|+|++|.|..++.... .+. ..+.-+|+|++|+
T Consensus 84 ---------LknlpsLr~LWL~ENPCc~~---ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 84 ---------LKNLPSLRTLWLDENPCCGE---AGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ---------HhcCchhhhHhhccCCcccc---cchhHHHHHHHHcccchhcc
Confidence 26789999999988776654 222 2335567777664
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.71 E-value=0.0015 Score=61.28 Aligned_cols=102 Identities=19% Similarity=0.151 Sum_probs=55.4
Q ss_pred CCccceeeeccCCCccccCCCCCCCCCCcEEEeccccCCcccccccCCCCCccEEEEEcCCccCCcCC---CCCCCcceE
Q 006531 413 LRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEALPKGLHNLTSLQHLAIIGGEFPSLEED---GLPTNLQSL 489 (641)
Q Consensus 413 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~l~~l~~~---~~~~~L~~L 489 (641)
+.+.++|+..+|. +.++. ....+|.|++|.++-|+. +.+ ..+..|++|++|+|..|.+.++... ..+|+|+.|
T Consensus 18 l~~vkKLNcwg~~-L~DIs-ic~kMp~lEVLsLSvNkI-ssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDIS-ICEKMPLLEVLSLSVNKI-SSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCC-ccHHH-HHHhcccceeEEeecccc-ccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 3455666666652 33322 123456777777766542 222 2356677777777777766665443 456777777
Q ss_pred Eecccccchhhhcc-cccccccCCCccEEE
Q 006531 490 RIWGNMEIWKSMIE-RGRGFHRFSSLRELI 518 (641)
Q Consensus 490 ~l~~~~~~~~~~~~-~~~~l~~l~~L~~L~ 518 (641)
+|..|+--....+. ....+..+|+|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77766532211111 011345667777766
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.95 E-value=0.013 Score=52.65 Aligned_cols=84 Identities=23% Similarity=0.307 Sum_probs=54.3
Q ss_pred cceEeecCcCCchhhhhcchHHhhcCCCCcEEEeccCCcccccccchhhhhhhhhhccCCCccEEEeccCcCcccc-ccc
Q 006531 142 LEELEINNIKNETDIWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKL-PQS 220 (641)
Q Consensus 142 L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l-~~~ 220 (641)
++.++-+++.... .....+..++.++.|.+.+|..+.+ ..+..+....++|+.|+|++|..+++- -..
T Consensus 103 IeaVDAsds~I~~----eGle~L~~l~~i~~l~l~~ck~~dD-------~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 103 IEAVDASDSSIMY----EGLEHLRDLRSIKSLSLANCKYFDD-------WCLERLGGLAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred EEEEecCCchHHH----HHHHHHhccchhhhheeccccchhh-------HHHHHhcccccchheeeccCCCeechhHHHH
Confidence 4555555544322 3344556777788888888877665 456666667788888888888765433 234
Q ss_pred cCCCCCccEEEecCCC
Q 006531 221 SLSLCSLREIEICKCS 236 (641)
Q Consensus 221 ~~~l~~L~~L~L~~~~ 236 (641)
+..+++|+.|.+.+-+
T Consensus 172 L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYDLP 187 (221)
T ss_pred HHHhhhhHHHHhcCch
Confidence 6677788888776543
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.39 E-value=0.06 Score=50.65 Aligned_cols=60 Identities=20% Similarity=0.270 Sum_probs=26.0
Q ss_pred CCCccEEEecCCCCCccCCCccCCCCccEEEccCCcCCccCChhhhhccCCCccEEEcccc
Q 006531 224 LCSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEEWMCDTNSSLEILYIEGC 284 (641)
Q Consensus 224 l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 284 (641)
+..|+.|.+.++ .++.+..+-.+++|++|.++.|.......-.+....+|+|++|+++++
T Consensus 42 ~~~le~ls~~n~-gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 42 FVELELLSVINV-GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred ccchhhhhhhcc-ceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 344444444444 233333333455666666655522111111112222366666666654
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.03 E-value=0.56 Score=39.89 Aligned_cols=101 Identities=19% Similarity=0.212 Sum_probs=42.1
Q ss_pred CCCCCcceEeecCcCCchhhhhcchHHhhcCCCCcEEEeccCCcccccccchhhhhhhhhhccCCCccEEEeccCcCccc
Q 006531 137 PRIPKLEELEINNIKNETDIWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVK 216 (641)
Q Consensus 137 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~ 216 (641)
..+++|+.+.+.. .++. +....|..+++|+.+.+.+ .+..+... .+... ++|+.+.+... . ..
T Consensus 9 ~~~~~l~~i~~~~--~~~~---I~~~~F~~~~~l~~i~~~~--~~~~i~~~----~F~~~----~~l~~i~~~~~-~-~~ 71 (129)
T PF13306_consen 9 YNCSNLESITFPN--TIKK---IGENAFSNCTSLKSINFPN--NLTSIGDN----AFSNC----KSLESITFPNN-L-KS 71 (129)
T ss_dssp TT-TT--EEEETS--T--E---E-TTTTTT-TT-SEEEESS--TTSCE-TT----TTTT-----TT-EEEEETST-T--E
T ss_pred hCCCCCCEEEECC--CeeE---eChhhcccccccccccccc--ccccccee----eeecc----ccccccccccc-c-cc
Confidence 5666777777763 3344 5556667777777777764 24444332 12222 45666666541 1 22
Q ss_pred cc-cccCCCCCccEEEecCCCCCccCCC--ccCCCCccEEEccC
Q 006531 217 LP-QSSLSLCSLREIEICKCSSLVSFPE--VALPSKLKKIRISS 257 (641)
Q Consensus 217 l~-~~~~~l~~L~~L~L~~~~~l~~l~~--~~~l~~L~~L~l~~ 257 (641)
++ ..+..+++|+.+.+..+ +..++. +..+ +|+.+.+..
T Consensus 72 i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 72 IGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp E-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 22 24455666666666432 222222 3334 555555543
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.88 E-value=1.1 Score=38.12 Aligned_cols=106 Identities=18% Similarity=0.231 Sum_probs=50.6
Q ss_pred cchHHhhcCCCCcEEEeccCCcccccccchhhhhhhhhhccCCCccEEEeccCcCcccccc-ccCCCCCccEEEecCCCC
Q 006531 159 SHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQ-SSLSLCSLREIEICKCSS 237 (641)
Q Consensus 159 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~ 237 (641)
++..+|..+.+|+.+.+.. .++.+... .+... ++|+.+.+.+. +..++. .+..++.|+.+.+.+ .
T Consensus 3 i~~~~F~~~~~l~~i~~~~--~~~~I~~~----~F~~~----~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~ 68 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN--TIKKIGEN----AFSNC----TSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--N 68 (129)
T ss_dssp E-TTTTTT-TT--EEEETS--T--EE-TT----TTTT-----TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--T
T ss_pred ECHHHHhCCCCCCEEEECC--CeeEeChh----hcccc----ccccccccccc--ccccceeeeecccccccccccc--c
Confidence 4455677888888888874 45555443 23333 67888887764 344433 566777788888864 2
Q ss_pred CccCCC--ccCCCCccEEEccCCcCCccCChhhhhccCCCccEEEcc
Q 006531 238 LVSFPE--VALPSKLKKIRISSCDALKSLPEEWMCDTNSSLEILYIE 282 (641)
Q Consensus 238 l~~l~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 282 (641)
+..++. +..+++|+.+.+... +..++...... .+|+.+.+.
T Consensus 69 ~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~--~~l~~i~~~ 111 (129)
T PF13306_consen 69 LKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSN--CNLKEINIP 111 (129)
T ss_dssp T-EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT---T--EEE-T
T ss_pred ccccccccccccccccccccCcc--ccEEchhhhcC--CCceEEEEC
Confidence 333333 455777777777542 44454444333 256666554
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.90 E-value=0.25 Score=25.32 Aligned_cols=11 Identities=36% Similarity=0.362 Sum_probs=4.1
Q ss_pred CccEEEecCCC
Q 006531 569 NLTSLYLYDCP 579 (641)
Q Consensus 569 ~L~~L~l~~c~ 579 (641)
+|++|++++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 34444444443
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=89.62 E-value=0.22 Score=27.54 Aligned_cols=18 Identities=44% Similarity=0.565 Sum_probs=9.0
Q ss_pred ccEEEeccCcCcccccccc
Q 006531 203 LEYLRLSNCEGLVKLPQSS 221 (641)
Q Consensus 203 L~~L~L~~~~~~~~l~~~~ 221 (641)
|++|++++|.. +.+|..+
T Consensus 2 L~~Ldls~n~l-~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNL-TSIPSSF 19 (22)
T ss_dssp ESEEEETSSEE-SEEGTTT
T ss_pred ccEEECCCCcC-EeCChhh
Confidence 55555555533 3555443
No 75
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=86.05 E-value=0.64 Score=26.85 Aligned_cols=16 Identities=19% Similarity=0.590 Sum_probs=8.6
Q ss_pred CCCcEEEeccCCcccc
Q 006531 168 CSLKRLTIDSCPKLQS 183 (641)
Q Consensus 168 ~~L~~L~l~~c~~l~~ 183 (641)
++|++|++++|..+++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 4555555555555554
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=67.55 E-value=3.5 Score=23.58 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=11.1
Q ss_pred CCccEEEEEcCCccCCcC
Q 006531 462 TSLQHLAIIGGEFPSLEE 479 (641)
Q Consensus 462 ~~L~~L~l~~~~l~~l~~ 479 (641)
++|++|++++|.+..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 456666666666665543
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=67.55 E-value=3.5 Score=23.58 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=11.1
Q ss_pred CCccEEEEEcCCccCCcC
Q 006531 462 TSLQHLAIIGGEFPSLEE 479 (641)
Q Consensus 462 ~~L~~L~l~~~~l~~l~~ 479 (641)
++|++|++++|.+..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 456666666666665543
No 78
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=50.99 E-value=11 Score=21.86 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=9.2
Q ss_pred CCccEEEEEcCCccCC
Q 006531 462 TSLQHLAIIGGEFPSL 477 (641)
Q Consensus 462 ~~L~~L~l~~~~l~~l 477 (641)
.+|++|+++.|.++.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666665544
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=47.72 E-value=12 Score=39.52 Aligned_cols=11 Identities=9% Similarity=0.229 Sum_probs=5.8
Q ss_pred CccEEEccCCc
Q 006531 249 KLKKIRISSCD 259 (641)
Q Consensus 249 ~L~~L~l~~~~ 259 (641)
.|++|-+.+|+
T Consensus 271 ~Leel~l~GNP 281 (585)
T KOG3763|consen 271 PLEELVLEGNP 281 (585)
T ss_pred CHHHeeecCCc
Confidence 35555555554
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=42.90 E-value=18 Score=20.11 Aligned_cols=13 Identities=23% Similarity=0.345 Sum_probs=6.2
Q ss_pred CCCccEEEeccCc
Q 006531 49 FPKLRELHILRCS 61 (641)
Q Consensus 49 ~~~L~~L~i~~c~ 61 (641)
+++|+.|+|++|.
T Consensus 1 ~~~L~~L~l~~n~ 13 (24)
T PF13516_consen 1 NPNLETLDLSNNQ 13 (24)
T ss_dssp -TT-SEEE-TSSB
T ss_pred CCCCCEEEccCCc
Confidence 3566666666664
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=41.53 E-value=18 Score=21.00 Aligned_cols=16 Identities=25% Similarity=0.465 Sum_probs=6.6
Q ss_pred CccEEEecCCCCCcccC
Q 006531 569 NLTSLYLYDCPKLKYFP 585 (641)
Q Consensus 569 ~L~~L~l~~c~~l~~l~ 585 (641)
+|+.|++++ +.++.+|
T Consensus 3 ~L~~L~vs~-N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSN-NQLTSLP 18 (26)
T ss_pred ccceeecCC-CccccCc
Confidence 344444444 2244444
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=33.02 E-value=25 Score=37.37 Aligned_cols=80 Identities=20% Similarity=0.184 Sum_probs=44.8
Q ss_pred CCCCccEEEecCCCCCccCCC----ccCCCCccEEEccCCcCCccCChhhhhccCCCccEEEcccccCCcccccc-----
Q 006531 223 SLCSLREIEICKCSSLVSFPE----VALPSKLKKIRISSCDALKSLPEEWMCDTNSSLEILYIEGCRSLTYIAAV----- 293 (641)
Q Consensus 223 ~l~~L~~L~L~~~~~l~~l~~----~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----- 293 (641)
+.+.+..+.+++|. +..+.. ....|+|+.|+|++|.....-..++.......|++|-+.|++..+.+...
T Consensus 216 n~p~i~sl~lsnNr-L~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNR-LYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccch-hhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 44556666666653 332222 23467888888888743322223333333467899999998766654322
Q ss_pred ---CCCCCCcEEe
Q 006531 294 ---QLPSSLKKLQ 303 (641)
Q Consensus 294 ---~~~~~L~~L~ 303 (641)
..+|+|..|+
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 3455555554
No 83
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=24.56 E-value=1.2e+02 Score=19.88 Aligned_cols=12 Identities=42% Similarity=0.609 Sum_probs=5.8
Q ss_pred CCCCCcceEEec
Q 006531 481 GLPTNLQSLRIW 492 (641)
Q Consensus 481 ~~~~~L~~L~l~ 492 (641)
..+++|++|.+.
T Consensus 31 ~lP~sl~~L~fg 42 (44)
T PF05725_consen 31 SLPNSLKSLSFG 42 (44)
T ss_pred ccCCCceEEEee
Confidence 344455555543
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=21.47 E-value=66 Score=18.76 Aligned_cols=13 Identities=38% Similarity=0.184 Sum_probs=8.1
Q ss_pred CCccEEEeccCcC
Q 006531 201 CRLEYLRLSNCEG 213 (641)
Q Consensus 201 ~~L~~L~L~~~~~ 213 (641)
++|++|+|++|..
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 4566666666654
Done!