Query 006531
Match_columns 641
No_of_seqs 258 out of 3146
Neff 10.0
Searched_HMMs 29240
Date Tue Mar 26 18:25:17 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006531.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2159-2162//hhsearch_pdb/006531hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 345.4 27.8 555 15-626 94-766 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 325.0 31.9 539 44-632 94-716 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 276.9 39.8 539 21-605 25-623 (680)
4 3t6q_A CD180 antigen; protein- 1.0 1 1 268.5 32.5 506 21-604 33-560 (606)
5 1ziw_A TOLL-like receptor 3; i 1.0 1 1 266.2 35.4 521 16-585 44-626 (680)
6 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 266.1 30.1 503 20-604 31-558 (606)
7 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 265.8 32.7 483 15-586 50-563 (606)
8 3t6q_A CD180 antigen; protein- 1.0 1 1 259.9 31.2 294 298-631 255-558 (606)
9 3j0a_A TOLL-like receptor 5; m 1.0 1 1 255.0 40.2 501 19-603 22-559 (844)
10 3j0a_A TOLL-like receptor 5; m 1.0 1 1 250.7 35.9 133 463-603 402-538 (844)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=345.37 Aligned_cols=555 Identities=16% Similarity=0.091 Sum_probs=344.9
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHCCCC----CCCCCEEEEEEECCCCCC---C
Q ss_conf 988668887379841353333300276777888899844897356731001379----989970499990477831---1
Q 006531 15 DSPIPFPCLETLCFENMQEWEDWIPHGSSQGVEEFPKLRELHILRCSKLQGAFP----KHLPALQMLVIRECEELS---I 87 (641)
Q Consensus 15 ~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~lp----~~~~~L~~L~l~~~~~~~---~ 87 (641)
..+..+++|++|+++++.-....... ..+..+++|++|++++|... +..| ..+++|++|++++|.... .
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 169 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSGPVTTL---TSLGSCSGLKFLNVSSNTLD-FPGKVSGGLKLNSLEVLDLSANSISGANVV 169 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEEEGGGG---GGGGGCTTCCEEECCSSEEE-CCSSCCSCCCCTTCSEEECCSSCCEEETHH
T ss_pred HHHCCCCCCCEEECCCCCCCCCCCCH---HHHHCCCCCCEEECCCCCCC-CCCCHHHHCCCCCCCEEECCCCCCCCCCCH
T ss_conf 33245788998989898578707896---78727889998989688267-747977856388999898979835885871
Q ss_pred C---CCCHHHHHHH-HHCCCCEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHCCHHH
Q ss_conf 3---8872559998-82375301102456679877500027876100149968999974468605767722332010477
Q 006531 88 S---ITSLPALCKL-VSGCKKVVGRSATDHLGSQNSVVCRDTSNQVFLARPLKPRIPKLEELEINNIKNETDIWKSHNEL 163 (641)
Q Consensus 88 ~---~~~~~~L~~L-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 163 (641)
. +..+++|++| ++++........ ...+.++++............. +..+++|++|++++|.... ..+..
T Consensus 170 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~----~~~~~ 242 (768)
T 3rgz_A 170 GWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG----DFSRA 242 (768)
T ss_dssp HHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCS----CHHHH
T ss_pred HHHHHCCCCCCCEEECCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCC----CCCHH
T ss_conf 556643589889898978803465784--5478689898928827887711-1269999989794885878----16577
Q ss_pred HHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCC-CCCCEEEECCCCCCCCCC
Q ss_conf 6308987689762587643331102345566642039984489700676863365455789-884489813799986478
Q 006531 164 LQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSL-CSLREIEICKCSSLVSFP 242 (641)
Q Consensus 164 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~l-~~L~~L~L~~~~~~~~l~ 242 (641)
+..+++|++|++++|.....++.. . +++|++|++++|.....+|..+... ++|++|++++|.....++
T Consensus 243 l~~l~~L~~L~Ls~n~l~~~~~~~-------~----l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p 311 (768)
T 3rgz_A 243 ISTCTELKLLNISSNQFVGPIPPL-------P----LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311 (768)
T ss_dssp TTTCSSCCEEECCSSCCEESCCCC-------C----CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC
T ss_pred HHCCCCCCEEECCCCCCCCCCCCC-------C----CCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCC
T ss_conf 744888898989888665716724-------3----68789897917855772588888446868899896896778423
Q ss_pred C-CCCCCCCCEEECCCCCCCCCCCHH-HHHCCCCCCCEEECCCCCCCCCCCCC-CC------------------------
Q ss_conf 7-668777648871577688557733-33046998148981266677312234-78------------------------
Q 006531 243 E-VALPSKLKKIRISSCDALKSLPEE-WMCDTNSSLEILYIEGCRSLTYIAAV-QL------------------------ 295 (641)
Q Consensus 243 ~-~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~-~~------------------------ 295 (641)
. ++.+++|++|++++|.....++.. +... ++|++|++++|.....+|.. ..
T Consensus 312 ~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~ 389 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKM--RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCHHHHTTC--TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTT
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCHHHHHCC--CCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHH
T ss_conf 6775587766778978852573797887248--88878848478437623098986322771998627874787676665
Q ss_pred ---CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEE
Q ss_conf ---99974895256835434411123212579855544444101236888210024698711110001368999853898
Q 006531 296 ---PSSLKKLQIHRCDNIRTLTVEEGIQCSSGRRYTSSLLEHLHIENCPSLTCIFSKNELPATLESLEVGNLPPSLKSLF 372 (641)
Q Consensus 296 ---~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~L~~L~ 372 (641)
+++|+.+++++|.....++ ..+. ..++|+.++++++ .++...| .. .+.. ++|+.|+
T Consensus 390 ~~~~~~L~~L~L~~n~l~~~~p--~~l~-------~l~~L~~L~Ls~N-~l~~~~p-----~~-----l~~l-~~L~~L~ 448 (768)
T 3rgz_A 390 QNPKNTLQELYLQNNGFTGKIP--PTLS-------NCSELVSLHLSFN-YLSGTIP-----SS-----LGSL-SKLRDLK 448 (768)
T ss_dssp CSTTCCCCEEECCSSEEEEECC--GGGG-------GCTTCCEEECCSS-EEESCCC-----GG-----GGGC-TTCCEEE
T ss_pred HCCCCCCCEEECCCCCCCCCCC--HHHH-------CCCCCCEEECCCC-CCCCCCC-----HH-----HHCC-CCCCEEE
T ss_conf 3324776189897784654248--7775-------6898798989588-4668546-----77-----7449-9889898
Q ss_pred ECCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 12688840047630169986479851356753134226688765514404677754569999999998579863566875
Q 006531 373 VWDCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLE 452 (641)
Q Consensus 373 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~ 452 (641)
+++|.....++..+..+++|+.|++++|...+.+|..+..+++|++|++++|.....+|.....+++|+.|++++|...+
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC
T ss_conf 97881547189788287773299901995137588788169989989753995189687688568999989897894337
Q ss_pred CCCCCCCCCCCCCEEEEECCCCC-CCCC----------------------------------------------------
Q ss_conf 35101278898437999769866-7767----------------------------------------------------
Q 006531 453 ALPKGLHNLTSLQHLAIIGGEFP-SLEE---------------------------------------------------- 479 (641)
Q Consensus 453 ~~~~~~~~l~~L~~L~l~~~~l~-~l~~---------------------------------------------------- 479 (641)
.+|..+..+++|+.|++++|.+. .+|.
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred CCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC
T ss_conf 48877708898998989888468827957860421223201345421111344432222332221001355632320023
Q ss_pred -------------------CCCCCCCCEEEECCCCCCHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf -------------------8988874467940555510210013533456789648998048898633442111137889
Q 006531 480 -------------------DGLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTAL 540 (641)
Q Consensus 480 -------------------~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~ 540 (641)
...+++|+.|++++|.. ++.+|. .++.+++|+.|+++++ .-...+|...+
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l-~g~ip~---~l~~l~~L~~L~Ls~N-~l~g~ip~~l~------ 677 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML-SGYIPK---EIGSMPYLFILNLGHN-DISGSIPDEVG------ 677 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC-BSCCCG---GGGGCTTCCEEECCSS-CCCSCCCGGGG------
T ss_pred CCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCC-CCCCCH---HHHCCCCCCEEECCCC-CCCCCCCHHHH------
T ss_conf 211001133100462743340335665797858801-555877---8841415787848688-03887896784------
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCHH----HHHHCCCCCCCC
Q ss_conf 9998834574146777621354433788755898638999864699991144555772489301----232123686335
Q 006531 541 PLPASLTSLRIVDFPNLERLSSSIVDLQNLTSLYLYDCPKLKYFPEKGLPSSLLQLDIYRCPLM----EEKCRKDGGQYW 616 (641)
Q Consensus 541 ~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~i~~c~~l----~~~~~~~~~~~~ 616 (641)
..++|+.|+++++.-...+|..+..++.|+.|++++|+..+.+|..+...++....+.+|+.+ -..|+...+++|
T Consensus 678 -~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~ 756 (768)
T 3rgz_A 678 -DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGY 756 (768)
T ss_dssp -GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC----
T ss_pred -CCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCCCCCCCCCCCC
T ss_conf -7778998989788023868867757887897879688155608996010248977756983210887767888766888
Q ss_pred CCCCCCCEEE
Q ss_conf 5665200589
Q 006531 617 DLLTHIPFVR 626 (641)
Q Consensus 617 ~~~~~~~~~~ 626 (641)
++++|++++.
T Consensus 757 ~~~~~~~~~~ 766 (768)
T 3rgz_A 757 AHHQRSHHHH 766 (768)
T ss_dssp ----------
T ss_pred CCCCCCCCCC
T ss_conf 9888765667
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=325.00 Aligned_cols=539 Identities=17% Similarity=0.105 Sum_probs=342.2
Q ss_pred CCCCCCCCCCEEEECCCCCHHCCCCC-----CCCCEEEEEEECCCCCC---C-CCCCHHHHHHH-HHCCCCEEEECCC--
Q ss_conf 78888998448973567310013799-----89970499990477831---1-38872559998-8237530110245--
Q 006531 44 QGVEEFPKLRELHILRCSKLQGAFPK-----HLPALQMLVIRECEELS---I-SITSLPALCKL-VSGCKKVVGRSAT-- 111 (641)
Q Consensus 44 ~~~~~~~~L~~L~i~~c~~l~~~lp~-----~~~~L~~L~l~~~~~~~---~-~~~~~~~L~~L-l~~~~~~~~~~~~-- 111 (641)
..+..+++|++|++++|.. .+.+|. .+++|++|++++|.... . ....+++|++| ++++.........
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 172 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSL-SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172 (768)
T ss_dssp CCCCCCTTCCEEECCSSEE-EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHH
T ss_pred HHHCCCCCCCEEECCCCCC-CCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHH
T ss_conf 3324578899898989857-870789678727889998989688267747977856388999898979835885871556
Q ss_pred -CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHCCHHHHHCCCCCCEEEECCCCCCCCCCCCHHH
Q ss_conf -6679877500027876100149968999974468605767722332010477630898768976258764333110234
Q 006531 112 -DHLGSQNSVVCRDTSNQVFLARPLKPRIPKLEELEINNIKNETDIWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEK 190 (641)
Q Consensus 112 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 190 (641)
+...+.++.+.......... .....+++|++|++++|..... .+. +..+++|++|++++|.....++.
T Consensus 173 ~~~~l~~L~~L~Ls~n~l~~~--~~~~~l~~L~~L~Ls~n~l~~~---~~~--l~~l~~L~~L~Ls~n~l~~~~~~---- 241 (768)
T 3rgz_A 173 LSDGCGELKHLAISGNKISGD--VDVSRCVNLEFLDVSSNNFSTG---IPF--LGDCSALQHLDISGNKLSGDFSR---- 241 (768)
T ss_dssp HTTCCTTCCEEECCSSEEESC--CBCTTCTTCCEEECCSSCCCSC---CCB--CTTCCSCCEEECCSSCCCSCHHH----
T ss_pred HHCCCCCCCEEECCCCCCCCC--CCCCCCCCCCEEECCCCCCCCC---CCC--CCCCCCCCEEECCCCCCCCCCCH----
T ss_conf 643589889898978803465--7845478689898928827887---711--12699999897948858781657----
Q ss_pred HHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC-CCC-CCCCCEEECCCCCCCCCCCHHH
Q ss_conf 55666420399844897006768633654557898844898137999864787-668-7776488715776885577333
Q 006531 191 DQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVSFPE-VAL-PSKLKKIRISSCDALKSLPEEW 268 (641)
Q Consensus 191 ~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~-l~~L~~L~l~~~~~l~~~~~~~ 268 (641)
.+..+ ++|++|++++|.....+|.. .+++|++|++++|...+.+|. +.. +++|++|++++|.....++..+
T Consensus 242 -~l~~l----~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 314 (768)
T 3rgz_A 242 -AISTC----TELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314 (768)
T ss_dssp -HTTTC----SSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG
T ss_pred -HHHCC----CCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHH
T ss_conf -77448----88898989888665716724--368789897917855772588888446868899896896778423677
Q ss_pred HHCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCC
Q ss_conf 304699814898126667731223--47899974895256835434411123212579855544-444101236888210
Q 006531 269 MCDTNSSLEILYIEGCRSLTYIAA--VQLPSSLKKLQIHRCDNIRTLTVEEGIQCSSGRRYTSS-LLEHLHIENCPSLTC 345 (641)
Q Consensus 269 ~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~-~L~~L~l~~c~~l~~ 345 (641)
... ++|++|++++|.....++. ...+++|+.+++++|.....++ ..+.. .+ +|+.++++++ .++.
T Consensus 315 ~~l--~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p--~~l~~-------l~~~L~~L~Ls~N-~l~~ 382 (768)
T 3rgz_A 315 GSC--SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP--ESLTN-------LSASLLTLDLSSN-NFSG 382 (768)
T ss_dssp GGC--TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCC--TTHHH-------HTTTCSEEECCSS-EEEE
T ss_pred HCC--CCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCC--HHHHH-------HHCCCCEEECCCC-CCCC
T ss_conf 558--7766778978852573797887248888788484784376230--98986-------3227719986278-7478
Q ss_pred CCCCCCCCHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 02469871111000136899985389812688840047630169986479851356753134226688765514404677
Q 006531 346 IFSKNELPATLESLEVGNLPPSLKSLFVWDCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCA 425 (641)
Q Consensus 346 ~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~ 425 (641)
.++... .....++|+.|++++|.....++..+..+++|+.|++++|...+.+|..+..+++|+.|++++|.
T Consensus 383 ~~~~~~---------~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~ 453 (768)
T 3rgz_A 383 PILPNL---------CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453 (768)
T ss_dssp ECCTTT---------TCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCHHH---------HHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCC
T ss_conf 767666---------53324776189897784654248777568987989895884668546777449988989897881
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCC-CCCC-CCCCCCCCEEEECCCCCCHHHHCC
Q ss_conf 75456999999999857986356687535101278898437999769866-7767-898887446794055551021001
Q 006531 426 NLVSFPEGGLPCAKLTTLVICHCERLEALPKGLHNLTSLQHLAIIGGEFP-SLEE-DGLPTNLQSLRIWGNMEIWKSMIE 503 (641)
Q Consensus 426 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~l~-~l~~-~~~~~~L~~L~l~~~~~l~~~~~~ 503 (641)
....++.....+++|+.|++++|.....+|..+..+++|++|+++++.+. .+|. .+.+++|++|++++|.... .++.
T Consensus 454 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~ 532 (768)
T 3rgz_A 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG-NIPA 532 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE-ECCG
T ss_pred CCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC-CCCH
T ss_conf 547189788287773299901995137588788169989989753995189687688568999989897894337-4887
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC-----------------------------------------------
Q ss_conf 353345678964899804889863344211113-----------------------------------------------
Q 006531 504 RGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRL----------------------------------------------- 536 (641)
Q Consensus 504 ~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~----------------------------------------------- 536 (641)
.+..+++|+.|++++| .-...+|...++.
T Consensus 533 ---~l~~l~~L~~L~Ls~N-~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 533 ---ELGDCRSLIWLDLNTN-LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ---GGGGCTTCCEEECCSS-EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred ---HHCCCCCCCEEECCCC-CCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC
T ss_conf ---7708898998989888-468827957860421223201345421111344432222332221001355632320023
Q ss_pred ----------------CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC-CCCCCCCEEEEC
Q ss_conf ----------------788999988345741467776213544337887558986389998646999-911445557724
Q 006531 537 ----------------GTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTSLYLYDCPKLKYFPEK-GLPSSLLQLDIY 599 (641)
Q Consensus 537 ----------------~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~-~~~~~L~~L~i~ 599 (641)
...+...++|+.|+++++.-...+|..+..++.|+.|++++|.....+|.. +.+++|+.|+++
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECC
T ss_conf 21100113310046274334033566579785880155587788414157878486880388789678477789989897
Q ss_pred CCCHHHHHHCCCCCCCCCCCCCCCEEEECCEEE
Q ss_conf 893012321236863355665200589960799
Q 006531 600 RCPLMEEKCRKDGGQYWDLLTHIPFVRINFKWV 632 (641)
Q Consensus 600 ~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (641)
+|..-..+ .+....+..+..+++..+.+
T Consensus 689 ~N~l~g~i-----p~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 689 SNKLDGRI-----PQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp SSCCEECC-----CGGGGGCCCCSEEECCSSEE
T ss_pred CCCCCCCC-----CHHHHCCCCCCEEECCCCCC
T ss_conf 88023868-----86775788789787968815
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=276.88 Aligned_cols=539 Identities=15% Similarity=0.089 Sum_probs=372.0
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHCCCCC---CCCCEEEEEEECCCCCC---CCCCCHHH
Q ss_conf 8873798413533333002767778888998448973567310013799---89970499990477831---13887255
Q 006531 21 PCLETLCFENMQEWEDWIPHGSSQGVEEFPKLRELHILRCSKLQGAFPK---HLPALQMLVIRECEELS---ISITSLPA 94 (641)
Q Consensus 21 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~lp~---~~~~L~~L~l~~~~~~~---~~~~~~~~ 94 (641)
++++.|++.+.. +..... ..+..+++|+.|+++++. +.+..|. .+++|+.|++++|.... ..+..+++
T Consensus 25 ~~l~~L~Ls~n~-l~~~~~----~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 25 TNITVLNLTHNQ-LRRLPA----ANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp TTCSEEECCSSC-CCCCCG----GGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCEEECCCCC-CCCCCH----HHHHCCCCCCEEECCCCC-CCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCC
T ss_conf 887688898997-787597----887178767588788996-48569778740667688889998567568545303888
Q ss_pred HHHH-HHCCCCEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHCCHHHHH--CCCCCC
Q ss_conf 9998-8237530110245667987750002787610014996899997446860576772233201047763--089876
Q 006531 95 LCKL-VSGCKKVVGRSATDHLGSQNSVVCRDTSNQVFLARPLKPRIPKLEELEINNIKNETDIWKSHNELLQ--DICSLK 171 (641)
Q Consensus 95 L~~L-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~--~~~~L~ 171 (641)
|++| ++++....++...+...+.++.+..............+..+++|++|+++++.. +. .+...+. .+++|+
T Consensus 99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~---~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI-QA---LKSEELDIFANSSLK 174 (680)
T ss_dssp CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC-CC---BCHHHHGGGTTCEES
T ss_pred CCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCC-CC---CCHHHHHCCCCCCCC
T ss_conf 89898989966853966741567888898989952466721112455677797458843-65---297886244666321
Q ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHC-----------------------CCCCCCEEEECCCCCCCCCCCCCCCCCC--
Q ss_conf 897625876433311023455666420-----------------------3998448970067686336545578988--
Q 006531 172 RLTIDSCPKLQSLVEEEEKDQQQQLCE-----------------------LSCRLEYLRLSNCEGLVKLPQSSLSLCS-- 226 (641)
Q Consensus 172 ~L~l~~c~~l~~l~~~~~~~~l~~l~~-----------------------~~~~L~~L~L~~~~~~~~l~~~~~~l~~-- 226 (641)
+|+++++ .++.+++.. +..+.. ..++|++|++++|......+.++..++.
T Consensus 175 ~L~L~~n-~l~~~~~~~----~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~ 249 (680)
T 1ziw_A 175 KLELSSN-QIKEFSPGC----FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249 (680)
T ss_dssp EEECTTC-CCCCBCTTG----GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSC
T ss_pred EEECCCC-CCCCCCHHH----HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCC
T ss_conf 7988898-256558155----53223445543056646805677787775315100887457743646866751467677
Q ss_pred CCEEEECCCCCCCCCC-C-CCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC-----CCC-----CCC
Q ss_conf 4489813799986478-7-668777648871577688557733330469981489812666773-----122-----347
Q 006531 227 LREIEICKCSSLVSFP-E-VALPSKLKKIRISSCDALKSLPEEWMCDTNSSLEILYIEGCRSLT-----YIA-----AVQ 294 (641)
Q Consensus 227 L~~L~L~~~~~~~~l~-~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~~~-----~~~ 294 (641)
|+.|++++|. +..++ . ++.+++|++|++++|......+..+... ++|+.|+++++.... .++ ...
T Consensus 250 L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~ 326 (680)
T 1ziw_A 250 LTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL--FNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326 (680)
T ss_dssp CCEEECTTSC-CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTC--TTCCEEECTTCBCCC------CCEECTTTTT
T ss_pred CCEEECCCCC-CCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCC--CCCCEEECCCHHHHCCCCCCCCCCCCHHHCC
T ss_conf 8887787887-675680211674105685577885676586562678--8855773633132133333554543865624
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEE
Q ss_conf 89997489525683543441112321257985554444410123688-82100246987111100013689998538981
Q 006531 295 LPSSLKKLQIHRCDNIRTLTVEEGIQCSSGRRYTSSLLEHLHIENCP-SLTCIFSKNELPATLESLEVGNLPPSLKSLFV 373 (641)
Q Consensus 295 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~-~l~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l 373 (641)
.+++|+.++++++......+ ..+ ..+++|+.++++++. .+.. ++...+.. . ..+.|+.|++
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~--~~~-------~~l~~L~~L~Ls~n~~~~~~-l~~~~f~~------~--~~~~L~~L~L 388 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKS--NMF-------TGLINLKYLSLSNSFTSLRT-LTNETFVS------L--AHSPLHILNL 388 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCT--TTT-------TTCTTCCEEECTTCBSCCCE-ECTTTTGG------G--TTSCCCEEEC
T ss_pred CCCCCCEEECCCCCCCCCCH--HHH-------CCCCCCCEEECCCCCHHHHH-CCHHHHCC------C--CCCCCCEEEC
T ss_conf 67778888798982687885--574-------06568728988798014432-35322024------5--5686766889
Q ss_pred CCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCC-
Q ss_conf 2688840047630169986479851356753134-22668876551440467775456999999999857986356687-
Q 006531 374 WDCPKLESIAERLDNNTSLETISIYNCENLKILP-SGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERL- 451 (641)
Q Consensus 374 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l- 451 (641)
+++......+..+..+++|+.|++++|.....++ ..+.++++|++|++++|......+..+..+++|+.|++.+|...
T Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 468 (680)
T 1ziw_A 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBC
T ss_pred CCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCC
T ss_conf 99977767754420778888886778757543575532575461278448997542276455007543101101464422
Q ss_pred -CCCCCCCCCCCCCCEEEEECCCCCCCCCC--CCCCCCCEEEECCCCCCHHH---HCC-CCCCCCCCCCCCEEEEECCCC
Q ss_conf -53510127889843799976986677678--98887446794055551021---001-353345678964899804889
Q 006531 452 -EALPKGLHNLTSLQHLAIIGGEFPSLEED--GLPTNLQSLRIWGNMEIWKS---MIE-RGRGFHRFSSLRELIIQGCDD 524 (641)
Q Consensus 452 -~~~~~~~~~l~~L~~L~l~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~---~~~-~~~~l~~l~~L~~L~l~~c~~ 524 (641)
..+|..+..+++|+.|+++++.+..++.. ..+++|++|++++|...... ++. ....+..+++|+.|++++ +
T Consensus 469 ~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~--N 546 (680)
T 1ziw_A 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES--N 546 (680)
T ss_dssp TTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS--S
T ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCC--C
T ss_conf 56677645557878999899998776794463455346888588997300000004677414233799888888999--9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCCCC---CCCCCCEEEECC
Q ss_conf 863344211113788999988345741467776213544-3378875589863899986469999---114455577248
Q 006531 525 DMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSS-IVDLQNLTSLYLYDCPKLKYFPEKG---LPSSLLQLDIYR 600 (641)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~i~~~~---~~~~L~~L~i~~ 600 (641)
.+..++.+.. ...++|+.|++++ +++..++.. +..+++|+.|++++| .+..++... ..++|+.+++++
T Consensus 547 ~l~~i~~~~~------~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 547 GFDEIPVEVF------KDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp CCCCCCTTTT------TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTT
T ss_pred CCCCCCHHHC------CCCCCCCEEECCC-CCCCCCCHHHHCCCCCCCEEECCCC-CCCCCCHHHHCCCCCCCCEEECCC
T ss_conf 7887797773------4666752238999-9777679768378988888989999-687059668301146657798318
Q ss_pred CCHHH
Q ss_conf 93012
Q 006531 601 CPLME 605 (641)
Q Consensus 601 c~~l~ 605 (641)
||..-
T Consensus 619 N~~~c 623 (680)
T 1ziw_A 619 NPFDC 623 (680)
T ss_dssp CCCCB
T ss_pred CCCCC
T ss_conf 97025
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=268.47 Aligned_cols=506 Identities=15% Similarity=0.124 Sum_probs=302.2
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHCCCCC---CCCCEEEEEEECCCCCC---CCCCCHHH
Q ss_conf 8873798413533333002767778888998448973567310013799---89970499990477831---13887255
Q 006531 21 PCLETLCFENMQEWEDWIPHGSSQGVEEFPKLRELHILRCSKLQGAFPK---HLPALQMLVIRECEELS---ISITSLPA 94 (641)
Q Consensus 21 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~lp~---~~~~L~~L~l~~~~~~~---~~~~~~~~ 94 (641)
+.++.|++++.. +..... ..+..+++|++|++++|. +.+..|. .+++|++|++++|.... ..+..+++
T Consensus 33 ~~l~~L~Ls~n~-i~~~~~----~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 33 NSTECLEFSFNV-LPTIQN----TTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp TTCCEEECTTCC-CSEECT----TTSTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred CCCCEEECCCCC-CCCCCH----HHHCCCCCCEEEECCCCC-CCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCC
T ss_conf 867589815873-471796----672567665289788983-55248511368433676448898565458655234421
Q ss_pred HHHH-HHCCCCEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHCCHHHHHCCCCCCEE
Q ss_conf 9998-823753011024566798775000278761001499689999744686057677223320104776308987689
Q 006531 95 LCKL-VSGCKKVVGRSATDHLGSQNSVVCRDTSNQVFLARPLKPRIPKLEELEINNIKNETDIWKSHNELLQDICSLKRL 173 (641)
Q Consensus 95 L~~L-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L 173 (641)
|++| ++++....++... +..+++|++|+++++.... .+...+..+++|++|
T Consensus 107 L~~L~L~~n~i~~l~~~~------------------------~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L 158 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIP------------------------LHNQKTLESLYLGSNHISS----IKLPKGFPTEKLKVL 158 (606)
T ss_dssp CCEEECTTSCCSCGGGSC------------------------CTTCTTCCEEECCSSCCCC----CCCCTTCCCTTCCEE
T ss_pred CCEEECCCCCCCCCCCCH------------------------HCCCCCCCEEECCCCCCCC----CCCCCCCCCCCCCEE
T ss_conf 537652126766578101------------------------2237822389887983411----476545687656877
Q ss_pred EECCCCCCCCCCCCHHHHHHHHHHCCCCCCC--EEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 7625876433311023455666420399844--89700676863365455789884489813799986478766877764
Q 006531 174 TIDSCPKLQSLVEEEEKDQQQQLCELSCRLE--YLRLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVSFPEVALPSKLK 251 (641)
Q Consensus 174 ~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~--~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~ 251 (641)
+++++ .++.+++. .+..+ ++|+ +|++++|......+..+ ...+|+.|++++|..+...........++
T Consensus 159 ~L~~n-~l~~~~~~----~~~~l----~~L~~l~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~l~ 228 (606)
T 3t6q_A 159 DFQNN-AIHYLSKE----DMSSL----QQATNLSLNLNGNDIAGIEPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228 (606)
T ss_dssp ECCSS-CCCEECHH----HHHTT----TTCCSEEEECTTCCCCEECTTTT-TTCEEEEEECTTCSCHHHHHHHTTTCEEE
T ss_pred ECCCC-CCCCCCHH----HHHHH----CCCCEEEEECCCCCCCCCCHHHH-HHCCCCCCCCCCCHHHHHHHHHCCCCCHH
T ss_conf 76568-44554965----63322----15640389667981475486673-00100135567726677776513356442
Q ss_pred EEECCCCCCCC--CCCHHHH-HCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88715776885--5773333-04699814898126667731223--4789997489525683543441112321257985
Q 006531 252 KIRISSCDALK--SLPEEWM-CDTNSSLEILYIEGCRSLTYIAA--VQLPSSLKKLQIHRCDNIRTLTVEEGIQCSSGRR 326 (641)
Q Consensus 252 ~L~l~~~~~l~--~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~ 326 (641)
.+.+....... .+..... .....+|+.|+++++. +..++. ...+++|+.++++++. ++.++ ..+.
T Consensus 229 ~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp--~~l~------ 298 (606)
T 3t6q_A 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSNTFHCFSGLQELDLTATH-LSELP--SGLV------ 298 (606)
T ss_dssp EEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC-CSSCCTTTTTTCTTCSEEECTTSC-CSCCC--SSCC------
T ss_pred HEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEECCC-CCCCCHHHHCCCCCCCEEECCCCC-CCCCC--HHHC------
T ss_conf 2002011026412268667430320750599944576-585577774456678889562882-67778--2141------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEECCCCCCHHHHH-HHCCCCCCCEEEEECCCCCCC
Q ss_conf 5544444101236888210024698711110001368999853898126888400476-301699864798513567531
Q 006531 327 YTSSLLEHLHIENCPSLTCIFSKNELPATLESLEVGNLPPSLKSLFVWDCPKLESIAE-RLDNNTSLETISIYNCENLKI 405 (641)
Q Consensus 327 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~ 405 (641)
..++|+.++++++ .++.+.+ .. .+.. ++|+.|+++++.....++. .+..+++|+.|++++|.....
T Consensus 299 -~l~~L~~L~l~~n-~l~~~~~-----~~-----~~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 365 (606)
T 3t6q_A 299 -GLSTLKKLVLSAN-KFENLCQ-----IS-----ASNF-PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365 (606)
T ss_dssp -SCTTCCEEECTTC-CCSBGGG-----GC-----GGGC-TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEE
T ss_pred -CCCCCCEEECCCC-CCCCCCH-----HH-----HHCC-CCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCC
T ss_conf -6546888977168-7686760-----23-----3015-76898889899744434624550667589887889966645
Q ss_pred C--CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC-CCCCCCCCCEEEEECCCCCCCCC--C
Q ss_conf 3--42266887655144046777545699999999985798635668753510-12788984379997698667767--8
Q 006531 406 L--PSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEALPK-GLHNLTSLQHLAIIGGEFPSLEE--D 480 (641)
Q Consensus 406 l--~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~l~~L~~L~l~~~~l~~l~~--~ 480 (641)
. +..+..+++|++|++++|......+..+..+++|+.|++++|......+. .+..+++|++|+++++.+..... .
T Consensus 366 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 445 (606)
T 3t6q_A 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445 (606)
T ss_dssp EESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT
T ss_pred CCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHH
T ss_conf 67522105678889898989967757888734774577687888867775652124176558889898985577687787
Q ss_pred CCCCCCCEEEECCCCCCHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 98887446794055551021001353345678964899804889863344211113788999988345741467776213
Q 006531 481 GLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERL 560 (641)
Q Consensus 481 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 560 (641)
..+++|++|++++|......++. ...+..+++|+.|++++| .+..++... +...++|+.|+++++.-....
T Consensus 446 ~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~l~~L~~L~Ls~n--~l~~~~~~~------~~~l~~L~~L~Ls~N~l~~~~ 516 (606)
T 3t6q_A 446 DGLPALQHLNLQGNHFPKGNIQK-TNSLQTLGRLEILVLSFC--DLSSIDQHA------FTSLKMMNHVDLSHNRLTSSS 516 (606)
T ss_dssp TTCTTCCEEECTTCBCGGGEECS-SCGGGGCTTCCEEECTTS--CCCEECTTT------TTTCTTCCEEECCSSCCCGGG
T ss_pred HCCCCCCEEECCCCCCCCCCCCC-CHHHCCCCCCCEEECCCC--CCCCCCHHH------HCCCCCCCEEECCCCCCCCCC
T ss_conf 37887888989899888543454-312404887668879999--667068646------326567888989898068689
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCC--CCCCCCEEEECCCCHH
Q ss_conf 5443378875589863899986469999--1144555772489301
Q 006531 561 SSSIVDLQNLTSLYLYDCPKLKYFPEKG--LPSSLLQLDIYRCPLM 604 (641)
Q Consensus 561 ~~~~~~l~~L~~L~l~~c~~l~~i~~~~--~~~~L~~L~i~~c~~l 604 (641)
+..+..++.| .|++++|. +..++... .+++|+.+++++|+..
T Consensus 517 ~~~l~~l~~L-~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 517 IEALSHLKGI-YLNLASNH-ISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp GGGGTTCCSC-EEECCSSC-CCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred HHHHCCCCCC-EEECCCCC-CCCCCHHHCCCCCCCCEEECCCCCCC
T ss_conf 6684756651-89876894-14268766256778788967799861
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=266.24 Aligned_cols=521 Identities=16% Similarity=0.072 Sum_probs=345.6
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHCCCCC----CCCCEEEEEEECCCCCC---CC
Q ss_conf 886688873798413533333002767778888998448973567310013799----89970499990477831---13
Q 006531 16 SPIPFPCLETLCFENMQEWEDWIPHGSSQGVEEFPKLRELHILRCSKLQGAFPK----HLPALQMLVIRECEELS---IS 88 (641)
Q Consensus 16 ~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~lp~----~~~~L~~L~l~~~~~~~---~~ 88 (641)
.+..+++|++|++.++. +..... ..+..+++|+.|++++|. +. .+|. .+++|++|++++|.... ..
T Consensus 44 ~~~~l~~L~~L~Ls~n~-l~~~~~----~~~~~l~~L~~L~L~~n~-l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 116 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNT-ISKLEP----ELCQKLPMLKVLNLQHNE-LS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNP 116 (680)
T ss_dssp GGGGGTTCSEEECCSSC-CCCCCT----THHHHCTTCCEEECCSSC-CC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCT
T ss_pred HHHCCCCCCEEECCCCC-CCCCCH----HHHHCCCCCCEEECCCCC-CC-CCCHHHHCCCCCCCEEECCCCCCCCCCHHH
T ss_conf 87178767588788996-485697----787406676888899985-67-568545303888898989899668539667
Q ss_pred CCCHHHHHHH-HHCCCCEEEECCCCCCCCCCCEEECCCCCCCCCCCCC--CCCCCCCCEEEECCCCCCHHHHHCCHHHHH
Q ss_conf 8872559998-8237530110245667987750002787610014996--899997446860576772233201047763
Q 006531 89 ITSLPALCKL-VSGCKKVVGRSATDHLGSQNSVVCRDTSNQVFLARPL--KPRIPKLEELEINNIKNETDIWKSHNELLQ 165 (641)
Q Consensus 89 ~~~~~~L~~L-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 165 (641)
+..+++|++| ++++.....+...+...+.++.+.............. ...+++|++|+++++.. +. .++..+.
T Consensus 117 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~---~~~~~~~ 192 (680)
T 1ziw_A 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI-KE---FSPGCFH 192 (680)
T ss_dssp TTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC-CC---BCTTGGG
T ss_pred CCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCC-CC---CCHHHHH
T ss_conf 4156788889898995246672111245567779745884365297886244666321798889825-65---5815553
Q ss_pred CC---------------------------CCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCC
Q ss_conf 08---------------------------987689762587643331102345566642039984489700676863365
Q 006531 166 DI---------------------------CSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLP 218 (641)
Q Consensus 166 ~~---------------------------~~L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~ 218 (641)
.+ ++|++|+++++. ++...+. .+..+ ..++|++|++++|......+
T Consensus 193 ~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~-l~~~~~~----~~~~l--~~~~L~~L~Ls~n~l~~~~~ 265 (680)
T 1ziw_A 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-LSTTSNT----TFLGL--KWTNLTMLDLSYNNLNVVGN 265 (680)
T ss_dssp GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC-CCEECTT----TTGGG--GGSCCCEEECTTSCCCEECT
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCC-CCCCCHH----HHHCC--CCCCCCEEECCCCCCCCCCC
T ss_conf 22344554305664680567778777531510088745774-3646866----75146--76778887787887675680
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCC-CCCCCCCCEEECCCCCCCC-----CCCH--HHHHCCCCCCCEEECCCCCCCCCC
Q ss_conf 4557898844898137999864787-6687776488715776885-----5773--333046998148981266677312
Q 006531 219 QSSLSLCSLREIEICKCSSLVSFPE-VALPSKLKKIRISSCDALK-----SLPE--EWMCDTNSSLEILYIEGCRSLTYI 290 (641)
Q Consensus 219 ~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~l~~~~~l~-----~~~~--~~~~~~~~~L~~L~l~~~~~l~~~ 290 (641)
..+..+++|+.|++++|......+. +..+++|++|+++++.... .++. ......+++|++|+++++......
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~ 345 (680)
T 1ziw_A 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK 345 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC
T ss_pred CCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCC
T ss_conf 21167410568557788567658656267888557736331321333335545438656246777888879898268788
Q ss_pred CC-CCCCCCCCEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 23-47899974895256835-43441112321257985554444410123688821002469871111000136899985
Q 006531 291 AA-VQLPSSLKKLQIHRCDN-IRTLTVEEGIQCSSGRRYTSSLLEHLHIENCPSLTCIFSKNELPATLESLEVGNLPPSL 368 (641)
Q Consensus 291 ~~-~~~~~~L~~L~l~~c~~-l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~L 368 (641)
+. ...+++|+.++++++.. +..++ .... .....++|+.++++++ +++.+.+ .. ... .++|
T Consensus 346 ~~~~~~l~~L~~L~Ls~n~~~~~~l~--~~~f----~~~~~~~L~~L~L~~n-~l~~~~~-~~---------~~~-l~~L 407 (680)
T 1ziw_A 346 SNMFTGLINLKYLSLSNSFTSLRTLT--NETF----VSLAHSPLHILNLTKN-KISKIES-DA---------FSW-LGHL 407 (680)
T ss_dssp TTTTTTCTTCCEEECTTCBSCCCEEC--TTTT----GGGTTSCCCEEECTTS-CCCEECT-TT---------TTT-CTTC
T ss_pred HHHHCCCCCCCEEECCCCCHHHHHCC--HHHH----CCCCCCCCCEEECCCC-CCCEECH-HH---------HHC-CCCC
T ss_conf 55740656872898879801443235--3220----2455686766889999-7776775-44---------207-7888
Q ss_pred CEEEECCCCCCHHHH-HHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCC--CCCCCCCCCCCCCCCEEEE
Q ss_conf 389812688840047-6301699864798513567531342266887655144046777--5456999999999857986
Q 006531 369 KSLFVWDCPKLESIA-ERLDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCAN--LVSFPEGGLPCAKLTTLVI 445 (641)
Q Consensus 369 ~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~--l~~l~~~~~~~~~L~~L~l 445 (641)
+.|+++++.....++ ..+..+++|+.+++++|......+..+..+++|+.|++++|.. +..++..+..+++|+.|++
T Consensus 408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEEC
T ss_conf 88867787575435755325754612784489975422764550075431011014644225667764555787899989
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC----------CCCCCCCCEEEECCCCCCHHHHCCCCCCCCCCCCCC
Q ss_conf 3566875351012788984379997698667767----------898887446794055551021001353345678964
Q 006531 446 CHCERLEALPKGLHNLTSLQHLAIIGGEFPSLEE----------DGLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLR 515 (641)
Q Consensus 446 ~~c~~l~~~~~~~~~l~~L~~L~l~~~~l~~l~~----------~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~ 515 (641)
++|......+..+..+++|++|+++++.+..++. ...+++|++|++++|... .++. ..+..+++|+
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~--~i~~--~~~~~l~~L~ 563 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD--EIPV--EVFKDLFELK 563 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC--CCCT--TTTTTCTTCC
T ss_pred CCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCC--CCCH--HHCCCCCCCC
T ss_conf 99987767944634553468885889973000000046774142337998888889999788--7797--7734666752
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC-C-CCCCCCEEEECCCCCCCCCC
Q ss_conf 8998048898633442111137889999883457414677762135443-3-78875589863899986469
Q 006531 516 ELIIQGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSI-V-DLQNLTSLYLYDCPKLKYFP 585 (641)
Q Consensus 516 ~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~-~l~~L~~L~l~~c~~l~~i~ 585 (641)
.|++++ +.+..++.... ...++|+.|+++++ .+..++... . .+++|+.+++++|+...+-+
T Consensus 564 ~L~Ls~--N~l~~l~~~~~------~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 564 IIDLGL--NNLNTLPASVF------NNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp EEECCS--SCCCCCCTTTT------TTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred EEECCC--CCCCCCCHHHH------CCCCCCCEEECCCC-CCCCCCHHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 238999--97776797683------78988888989999-68705966830114665779831897025776
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=266.07 Aligned_cols=503 Identities=15% Similarity=0.075 Sum_probs=286.0
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHCCCCC---CCCCEEEEEEECCCCCC---CCCCCHH
Q ss_conf 88873798413533333002767778888998448973567310013799---89970499990477831---1388725
Q 006531 20 FPCLETLCFENMQEWEDWIPHGSSQGVEEFPKLRELHILRCSKLQGAFPK---HLPALQMLVIRECEELS---ISITSLP 93 (641)
Q Consensus 20 f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~lp~---~~~~L~~L~l~~~~~~~---~~~~~~~ 93 (641)
.+++++|++.+.. +..... ..+..+++|+.|++++|. +.+..|. .+++|++|++++|.... ..+..++
T Consensus 31 ~~~l~~L~Ls~n~-l~~~~~----~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 31 PSSTKNIDLSFNP-LKILKS----YSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp CTTCCEEECTTSC-CCEECT----TTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCCCCEEECCCCC-CCEECH----HHCCCCCCCCEEECCCCC-CCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCC
T ss_conf 8876788788897-577375----455577667488688773-6643977730601068867879856304852207865
Q ss_pred HHHHH-HHCCCCEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHCCHHHHHCCCCCCE
Q ss_conf 59998-82375301102456679877500027876100149968999974468605767722332010477630898768
Q 006531 94 ALCKL-VSGCKKVVGRSATDHLGSQNSVVCRDTSNQVFLARPLKPRIPKLEELEINNIKNETDIWKSHNELLQDICSLKR 172 (641)
Q Consensus 94 ~L~~L-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~ 172 (641)
+|++| +++|.....+... +..+++|++|+++++..... ..+..+..+++|++
T Consensus 105 ~L~~L~L~~n~l~~~~~~~------------------------~~~l~~L~~L~L~~n~l~~~---~lp~~~~~l~~L~~ 157 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFP------------------------IGQLITLKKLNVAHNFIHSC---KLPAYFSNLTNLVH 157 (606)
T ss_dssp TCCEEECTTSCCCCSSSSC------------------------CTTCTTCCEEECCSSCCCCC---CCCGGGGTCTTCCE
T ss_pred CCCEEECCCCCCCCCCCCC------------------------CCCCCCCCEEECCCCCCCCE---ECHHHHHHCCCCCE
T ss_conf 3788870377555445113------------------------48988779896878852325---30686732677778
Q ss_pred EEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC-CCC-CCCCCCC
Q ss_conf 97625876433311023455666420399844897006768633654557898844898137999864-787-6687776
Q 006531 173 LTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVS-FPE-VALPSKL 250 (641)
Q Consensus 173 L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~-l~~-~~~l~~L 250 (641)
|+++++ .++.++.. .+..+......+++|+++++.. ..++.......+|+.|++++|..... .+. +..++.|
T Consensus 158 L~Ls~n-~l~~~~~~----~~~~l~~L~~~l~~L~l~~n~l-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L 231 (606)
T 3vq2_A 158 VDLSYN-YIQTITVN----DLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGL 231 (606)
T ss_dssp EECCSS-CCCEECTT----TTHHHHHCTTCCCEEECTTCCC-CEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTC
T ss_pred EECCCC-CCEECCHH----HHHHHHCCCCCCCEEECCCCCC-CEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCC
T ss_conf 876688-53105733----4121203420024300468975-32571105676043352467856166778886026656
Q ss_pred CEEECCCCC-----CCCCCCHHHH-HCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 488715776-----8855773333-04699814898126667731-2234789997489525683543441112321257
Q 006531 251 KKIRISSCD-----ALKSLPEEWM-CDTNSSLEILYIEGCRSLTY-IAAVQLPSSLKKLQIHRCDNIRTLTVEEGIQCSS 323 (641)
Q Consensus 251 ~~L~l~~~~-----~l~~~~~~~~-~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~ 323 (641)
+.+.+.... .+..+..... ....-.++.+++.....+.. .+....+++|+.++++++.. ..++ .
T Consensus 232 ~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~---~----- 302 (606)
T 3vq2_A 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLE---D----- 302 (606)
T ss_dssp EEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCC-CCCC---C-----
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHEECCCCCCCCCCCCCCCCCCCCCEEEECCCCC-HHHH---H-----
T ss_conf 523141111036774102681776666543474501236655554322235488789877147660-4435---4-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCEEEEECCCCC
Q ss_conf 98555444441012368882100246987111100013689998538981268884004763016998647985135675
Q 006531 324 GRRYTSSLLEHLHIENCPSLTCIFSKNELPATLESLEVGNLPPSLKSLFVWDCPKLESIAERLDNNTSLETISIYNCENL 403 (641)
Q Consensus 324 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 403 (641)
....++|+.+++++|.- .. +| . . ..++|+.|+++++...... .+..+++|+.|++++|. +
T Consensus 303 --l~~~~~L~~L~l~~n~l-~~-lp-----~------~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l 362 (606)
T 3vq2_A 303 --VPKHFKWQSLSIIRCQL-KQ-FP-----T------L--DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNA-L 362 (606)
T ss_dssp --CCTTCCCSEEEEESCCC-SS-CC-----C------C--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSC-E
T ss_pred --CCCCCCCCEEECCCCCC-CC-CC-----C------C--CCCCCCEEECCCCCCCCCH--HHCCCCCCCEEECCCCC-C
T ss_conf --33401177897646667-65-46-----6------7--8875564454478685310--00248988879775873-6
Q ss_pred CCC---CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC-CCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 313---4226688765514404677754569999999998579863566875351-012788984379997698667767
Q 006531 404 KIL---PSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEALP-KGLHNLTSLQHLAIIGGEFPSLEE 479 (641)
Q Consensus 404 ~~l---~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~l~~L~~L~l~~~~l~~l~~ 479 (641)
..+ +..+..+++|++|++++|. +..++..+..+++|+.|++++|......+ ..+..+++|++|+++++.+.....
T Consensus 363 ~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 441 (606)
T 3vq2_A 363 SFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441 (606)
T ss_dssp EEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT
T ss_pred CCCCCHHHHHCCCCCCCEEECCCCC-CCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCH
T ss_conf 8775201221467755486788995-300055406888889658988705875376456462137889896897874335
Q ss_pred --CCCCCCCCEEEECCCCCCHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf --898887446794055551021001353345678964899804889863344211113788999988345741467776
Q 006531 480 --DGLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNL 557 (641)
Q Consensus 480 --~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 557 (641)
...+++|++|++++|.......+. .+..+++|+.|++++| .+..++... +...++|+.|++++| .+
T Consensus 442 ~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~Ls~n--~l~~~~~~~------~~~l~~L~~L~Ls~N-~l 509 (606)
T 3vq2_A 442 GIFLGLTSLNTLKMAGNSFKDNTLSN---VFANTTNLTFLDLSKC--QLEQISWGV------FDTLHRLQLLNMSHN-NL 509 (606)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTTS--CCCEECTTT------TTTCTTCCEEECCSS-CC
T ss_pred HHHCCCCCCCEEECCCCCCCCCCHHH---HHCCCCCCCEEECCCC--CCCCCCHHH------HCCCCCCCEEECCCC-CC
T ss_conf 55347787898989898379854677---6045788998989888--577648656------154646898989899-57
Q ss_pred CC-CCCCCCCCCCCCEEEECCCCCCCCCCCC--CCCCCCCEEEECCCCHH
Q ss_conf 21-3544337887558986389998646999--91144555772489301
Q 006531 558 ER-LSSSIVDLQNLTSLYLYDCPKLKYFPEK--GLPSSLLQLDIYRCPLM 604 (641)
Q Consensus 558 ~~-l~~~~~~l~~L~~L~l~~c~~l~~i~~~--~~~~~L~~L~i~~c~~l 604 (641)
.. .|..+..+++|+.|++++|+ +..+|.. .++++|+.+++++|+..
T Consensus 510 ~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 510 LFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp SCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred CCCCHHHCCCCCCCCEEECCCCC-CCCCCHHHHHHCCCCCEEECCCCCCC
T ss_conf 87487770688768988898983-76668767521021748876289866
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=265.83 Aligned_cols=483 Identities=17% Similarity=0.100 Sum_probs=331.4
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHCCCCC---CCCCEEEEEEECCCCCC---CC
Q ss_conf 9886688873798413533333002767778888998448973567310013799---89970499990477831---13
Q 006531 15 DSPIPFPCLETLCFENMQEWEDWIPHGSSQGVEEFPKLRELHILRCSKLQGAFPK---HLPALQMLVIRECEELS---IS 88 (641)
Q Consensus 15 ~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~lp~---~~~~L~~L~l~~~~~~~---~~ 88 (641)
.++..+++|+.|++.++. +..... ..+..+++|+.|++++|. +.+..|. .+++|++|++++|.... ..
T Consensus 50 ~~~~~l~~L~~L~Ls~n~-l~~i~~----~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 123 (606)
T 3vq2_A 50 YSFSNFSELQWLDLSRCE-IETIED----KAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETKLASLESFP 123 (606)
T ss_dssp TTTTTCTTCCEEECTTCC-CCEECT----TTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSC
T ss_pred HHCCCCCCCCEEECCCCC-CCCCCH----HHHHCHHHCCEEECCCCC-CCCCCHHHCCCCCCCCEEECCCCCCCCCCCCC
T ss_conf 455577667488688773-664397----773060106886787985-63048522078653788870377555445113
Q ss_pred CCCHHHHHHH-HHCCCCEE--EECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHCCHHHHH
Q ss_conf 8872559998-82375301--10245667987750002787610014996899997446860576772233201047763
Q 006531 89 ITSLPALCKL-VSGCKKVV--GRSATDHLGSQNSVVCRDTSNQVFLARPLKPRIPKLEELEINNIKNETDIWKSHNELLQ 165 (641)
Q Consensus 89 ~~~~~~L~~L-l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 165 (641)
+..+++|++| ++++.... ++.. +..+++|++|+++++.. +. .+...+.
T Consensus 124 ~~~l~~L~~L~L~~n~l~~~~lp~~-------------------------~~~l~~L~~L~Ls~n~l-~~---~~~~~~~ 174 (606)
T 3vq2_A 124 IGQLITLKKLNVAHNFIHSCKLPAY-------------------------FSNLTNLVHVDLSYNYI-QT---ITVNDLQ 174 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGG-------------------------GGTCTTCCEEECCSSCC-CE---ECTTTTH
T ss_pred CCCCCCCCEEECCCCCCCCEECHHH-------------------------HHHCCCCCEEECCCCCC-EE---CCHHHHH
T ss_conf 4898877989687885232530686-------------------------73267777887668853-10---5733412
Q ss_pred CCCC----CCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCC-CCCCCCCCCCCCCCEEEECCCCC--C
Q ss_conf 0898----768976258764333110234556664203998448970067686-33654557898844898137999--8
Q 006531 166 DICS----LKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGL-VKLPQSSLSLCSLREIEICKCSS--L 238 (641)
Q Consensus 166 ~~~~----L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~-~~l~~~~~~l~~L~~L~L~~~~~--~ 238 (641)
.+.+ ++.|+++++ .++.++.. .... .+|++|++++|... ...+..+..+++|+.+.+..... .
T Consensus 175 ~l~~L~~~l~~L~l~~n-~l~~~~~~-----~~~~----~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 244 (606)
T 3vq2_A 175 FLRENPQVNLSLDMSLN-PIDFIQDQ-----AFQG----IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244 (606)
T ss_dssp HHHHCTTCCCEEECTTC-CCCEECTT-----TTTT----CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred HHHCCCCCCCEEECCCC-CCCEECCC-----CCCC----CEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 12034200243004689-75325711-----0567----60433524678561667788860266565231411110367
Q ss_pred CCCC---C--CCC--CCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 6478---7--668--77764887157768855773333046998148981266677312234789997489525683543
Q 006531 239 VSFP---E--VAL--PSKLKKIRISSCDALKSLPEEWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKKLQIHRCDNIR 311 (641)
Q Consensus 239 ~~l~---~--~~~--l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~ 311 (641)
..+. . +.. ...++.+.+..+..+......+... ++|+.|++.++. +..++....+++|+.+++++|.. .
T Consensus 245 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~-~~~l~~l~~~~~L~~L~l~~n~l-~ 320 (606)
T 3vq2_A 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL--ANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQL-K 320 (606)
T ss_dssp CCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGG--TTCSEEEEESCC-CCCCCCCCTTCCCSEEEEESCCC-S
T ss_pred CCCCCCCHHHHHHHHHCCHHHEECCCCCCCCCCCCCCCCC--CCCCEEEECCCC-CHHHHHCCCCCCCCEEECCCCCC-C
T ss_conf 7410268177666654347450123665555432223548--878987714766-04435433401177897646667-6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEECCCCCCHH--HHHHHCCC
Q ss_conf 4411123212579855544444101236888210024698711110001368999853898126888400--47630169
Q 006531 312 TLTVEEGIQCSSGRRYTSSLLEHLHIENCPSLTCIFSKNELPATLESLEVGNLPPSLKSLFVWDCPKLES--IAERLDNN 389 (641)
Q Consensus 312 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l 389 (641)
.++ . . ..++|+.++++++..+.. ++ .+.. ++|++|+++++..... .+..+..+
T Consensus 321 ~lp--~--------~-~l~~L~~L~l~~n~~~~~-~~------------~~~l-~~L~~L~ls~n~l~~~~~~~~~~~~~ 375 (606)
T 3vq2_A 321 QFP--T--------L-DLPFLKSLTLTMNKGSIS-FK------------KVAL-PSLSYLDLSRNALSFSGCCSYSDLGT 375 (606)
T ss_dssp SCC--C--------C-CCSSCCEEEEESCSSCEE-CC------------CCCC-TTCCEEECCSSCEEEEEECCHHHHCC
T ss_pred CCC--C--------C-CCCCCCEEECCCCCCCCC-HH------------HCCC-CCCCEEECCCCCCCCCCCHHHHHCCC
T ss_conf 546--6--------7-887556445447868531-00------------0248-98887977587368775201221467
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 986479851356753134226688765514404677754569-9999999985798635668753510127889843799
Q 006531 390 TSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFP-EGGLPCAKLTTLVICHCERLEALPKGLHNLTSLQHLA 468 (641)
Q Consensus 390 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~ 468 (641)
++|+.|++++| .+..++..+.++++|+.|++++|......+ ..+..+++|+.|++++|......|..+..+++|++|+
T Consensus 376 ~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 454 (606)
T 3vq2_A 376 NSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454 (606)
T ss_dssp SCCCEEECCSC-SEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCC-CCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEE
T ss_conf 75548678899-53000554068888896589887058753764564621378898968978743355534778789898
Q ss_pred EECCCCCC--CCC-CCCCCCCCEEEECCCCCCHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCC-CCCCCCCCCCCCCCC
Q ss_conf 97698667--767-89888744679405555102100135334567896489980488986334-421111378899998
Q 006531 469 IIGGEFPS--LEE-DGLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVSF-PLEDKRLGTALPLPA 544 (641)
Q Consensus 469 l~~~~l~~--l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~~~~~~-~~~~~~~~~~~~~~~ 544 (641)
++++.+.. ++. ...+++|++|++++|.... ..+. .+..+++|+.|++++| .+..+ +... ...+
T Consensus 455 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~---~~~~l~~L~~L~Ls~N--~l~~~~~~~~-------~~l~ 521 (606)
T 3vq2_A 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWG---VFDTLHRLQLLNMSHN--NLLFLDSSHY-------NQLY 521 (606)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTT---TTTTCTTCCEEECCSS--CCSCEEGGGT-------TTCT
T ss_pred CCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC-CCHH---HHCCCCCCCEEECCCC--CCCCCCHHHC-------CCCC
T ss_conf 989837985467760457889989898885776-4865---6154646898989899--5787487770-------6887
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCC-CCCEEEECCCCCCCCCCC
Q ss_conf 834574146777621354433788-755898638999864699
Q 006531 545 SLTSLRIVDFPNLERLSSSIVDLQ-NLTSLYLYDCPKLKYFPE 586 (641)
Q Consensus 545 ~L~~L~l~~~~~l~~l~~~~~~l~-~L~~L~l~~c~~l~~i~~ 586 (641)
+|+.|++++| .+..+|..+..++ +|+.+++++|+.....+.
T Consensus 522 ~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 522 SLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCEEECCCC-CCCCCCHHHHHHCCCCCEEECCCCCCCCCCCC
T ss_conf 6898889898-37666876752102174887628986647764
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=259.94 Aligned_cols=294 Identities=15% Similarity=0.073 Sum_probs=157.5
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEECCCC
Q ss_conf 97489525683543441112321257985554444410123688821002469871111000136899985389812688
Q 006531 298 SLKKLQIHRCDNIRTLTVEEGIQCSSGRRYTSSLLEHLHIENCPSLTCIFSKNELPATLESLEVGNLPPSLKSLFVWDCP 377 (641)
Q Consensus 298 ~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~ 377 (641)
+++.++++++.. ..++ .... ...++|+.++++++ .++. +| .+ .+.. ++|++|+++++.
T Consensus 255 ~L~~L~l~~n~l-~~~~--~~~~------~~l~~L~~L~l~~n-~l~~-lp-----~~-----l~~l-~~L~~L~l~~n~ 312 (606)
T 3t6q_A 255 SVESINLQKHYF-FNIS--SNTF------HCFSGLQELDLTAT-HLSE-LP-----SG-----LVGL-STLKKLVLSANK 312 (606)
T ss_dssp EEEEEECTTCCC-SSCC--TTTT------TTCTTCSEEECTTS-CCSC-CC-----SS-----CCSC-TTCCEEECTTCC
T ss_pred CEEEEEEECCCC-CCCC--HHHH------CCCCCCCEEECCCC-CCCC-CC-----HH-----HCCC-CCCCEEECCCCC
T ss_conf 505999445765-8557--7774------45667888956288-2677-78-----21-----4165-468889771687
Q ss_pred CCHHHHHHHCCCCCCCEEEEECCCCCCCCCC-CCCCCCCCCEEEECCCCCCCCC--CCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 8400476301699864798513567531342-2668876551440467775456--999999999857986356687535
Q 006531 378 KLESIAERLDNNTSLETISIYNCENLKILPS-GLHNLRQLRGITIQSCANLVSF--PEGGLPCAKLTTLVICHCERLEAL 454 (641)
Q Consensus 378 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~l~~c~~l~~~ 454 (641)
.....+..+..+++|+.|++++|.....++. .+..+++|++|++++|...... +.....+++|+.|++++|......
T Consensus 313 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 392 (606)
T 3t6q_A 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392 (606)
T ss_dssp CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEEC
T ss_pred CCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCC
T ss_conf 68676023301576898889899744434624550667589887889966645675221056788898989899677578
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCC---CCCCCCCCEEEECCCCCCHHHHCCCCCCCCCCCCCCEEEEECCCCCCCC--C
Q ss_conf 1012788984379997698667767---8988874467940555510210013533456789648998048898633--4
Q 006531 455 PKGLHNLTSLQHLAIIGGEFPSLEE---DGLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVS--F 529 (641)
Q Consensus 455 ~~~~~~l~~L~~L~l~~~~l~~l~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~~~~~--~ 529 (641)
+..+..+++|++|+++++.+..... ...+++|++|++++|.... ..+. .+..+++|+.|++++| .+.. +
T Consensus 393 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~---~~~~l~~L~~L~L~~n--~l~~~~~ 466 (606)
T 3t6q_A 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI-SSEQ---LFDGLPALQHLNLQGN--HFPKGNI 466 (606)
T ss_dssp TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBT-TCTT---TTTTCTTCCEEECTTC--BCGGGEE
T ss_pred HHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC-CCHH---HHHCCCCCCEEECCCC--CCCCCCC
T ss_conf 88734774577687888867775652124176558889898985577-6877---8737887888989899--8885434
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCC-CCCCCCCCCCCEEEECCCCCCCCCCC-CCCCCCCCEEEECCCCHHHHH
Q ss_conf 4211113788999988345741467776213-54433788755898638999864699-991144555772489301232
Q 006531 530 PLEDKRLGTALPLPASLTSLRIVDFPNLERL-SSSIVDLQNLTSLYLYDCPKLKYFPE-KGLPSSLLQLDIYRCPLMEEK 607 (641)
Q Consensus 530 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~i~~-~~~~~~L~~L~i~~c~~l~~~ 607 (641)
+... .+..+++|+.|++++| .+..+ +..+..+++|+.|++++|......+. ....+.| .+++++|..-..
T Consensus 467 ~~~~-----~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~- 538 (606)
T 3t6q_A 467 QKTN-----SLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII- 538 (606)
T ss_dssp CSSC-----GGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCC-
T ss_pred CCCH-----HHCCCCCCCEEECCCC-CCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCC-
T ss_conf 5431-----2404887668879999-6670686463265678889898980686896684756651-898768941426-
Q ss_pred HCCCCCCCCCCCCCCCEEEECCEE
Q ss_conf 123686335566520058996079
Q 006531 608 CRKDGGQYWDLLTHIPFVRINFKW 631 (641)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~ 631 (641)
..+.+..+..+..+++.++.
T Consensus 539 ----~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 539 ----LPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp ----CGGGHHHHHTSSEEECTTCC
T ss_pred ----CHHHCCCCCCCCEEECCCCC
T ss_conf ----87662567787889677998
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=254.98 Aligned_cols=501 Identities=16% Similarity=0.095 Sum_probs=276.5
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHCCC-C---CCCCCEEEEEEECCCCCC---CCCCC
Q ss_conf 6888737984135333330027677788889984489735673100137-9---989970499990477831---13887
Q 006531 19 PFPCLETLCFENMQEWEDWIPHGSSQGVEEFPKLRELHILRCSKLQGAF-P---KHLPALQMLVIRECEELS---ISITS 91 (641)
Q Consensus 19 ~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~l-p---~~~~~L~~L~l~~~~~~~---~~~~~ 91 (641)
-.++++.|++++.. +..... ..+..+++|+.|++++|.... .+ | ..+++|+.|++++|.... ..+..
T Consensus 22 lp~~l~~LdLs~N~-i~~i~~----~~~~~l~~L~~LdLs~n~~~~-~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~ 95 (844)
T 3j0a_A 22 VLNTTERLLLSFNY-IRTVTA----SSFPFLEQLQLLELGSQYTPL-TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95 (844)
T ss_dssp SCTTCCEEEEESCC-CCEECS----SSCSSCCSCSEEEECTTCCCC-EECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred CCCCCCEEECCCCC-CCCCCH----HHCCCCCCCEEEECCCCCCCC-CCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCC
T ss_conf 99986888887786-783296----677662137088678997744-419778537877888879899585319767157
Q ss_pred HHHHHHH-HHCCCCEE-EECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHCCHHHHHCCCC
Q ss_conf 2559998-82375301-102456679877500027876100149968999974468605767722332010477630898
Q 006531 92 LPALCKL-VSGCKKVV-GRSATDHLGSQNSVVCRDTSNQVFLARPLKPRIPKLEELEINNIKNETDIWKSHNELLQDICS 169 (641)
Q Consensus 92 ~~~L~~L-l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 169 (641)
+++|++| +++|.... .+. ...+..+++|++|++++|..... .+...+..+++
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~-----------------------~~~~~~L~~L~~L~Ls~N~l~~~---~~~~~~~~L~~ 149 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLK-----------------------DGYFRNLKALTRLDLSKNQIRSL---YLHPSFGKLNS 149 (844)
T ss_dssp CSSCCCEECTTCCCSSCCST-----------------------TCCCSSCSSCCEEEEESCCCCCC---CCCGGGGTCSS
T ss_pred CCCCCEEECCCCCCCCCCCC-----------------------CCCCCCCCCCCEEECCCCCCCCC---CCCHHHHHCCC
T ss_conf 86658701767889734046-----------------------76455667999888987864232---56655763889
Q ss_pred CCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCC------CCEEEECCCCCCCCCCC
Q ss_conf 768976258764333110234556664203998448970067686336545578988------44898137999864787
Q 006531 170 LKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLCS------LREIEICKCSSLVSFPE 243 (641)
Q Consensus 170 L~~L~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~l~~------L~~L~L~~~~~~~~l~~ 243 (641)
|++|+++++ .++.+... .+..+.. ++|+.|++++|......+..+..+.+ |+.|++++|......+.
T Consensus 150 L~~L~Ls~N-~i~~~~~~----~l~~l~~--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 222 (844)
T 3j0a_A 150 LKSIDFSSN-QIFLVCEH----ELEPLQG--KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG 222 (844)
T ss_dssp CCEEEEESS-CCCCCCSG----GGHHHHH--CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTS
T ss_pred CCEEECCCC-CCCEECHH----HCCCCCC--CCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHH
T ss_conf 898989898-47766788----7535567--7503578978866655455332237722357400796578868656778
Q ss_pred ----CCCCCCCCEEECCCCCC--------CCCCCH-HHHHCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCEEECCCCCC
Q ss_conf ----66877764887157768--------855773-333046998148981266677312234-7899974895256835
Q 006531 244 ----VALPSKLKKIRISSCDA--------LKSLPE-EWMCDTNSSLEILYIEGCRSLTYIAAV-QLPSSLKKLQIHRCDN 309 (641)
Q Consensus 244 ----~~~l~~L~~L~l~~~~~--------l~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~c~~ 309 (641)
......++.+.+..+.. +..... .+.....++|+.|+++++......+.. ..+++|+.++++++..
T Consensus 223 ~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i 302 (844)
T 3j0a_A 223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302 (844)
T ss_dssp GGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCC
T ss_pred HHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCC
T ss_conf 88764274410011212122346644456688985565255547861898979945515863452589999998979818
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHCCC
Q ss_conf 43441112321257985554444410123688821002469871111000136899985389812688840047630169
Q 006531 310 IRTLTVEEGIQCSSGRRYTSSLLEHLHIENCPSLTCIFSKNELPATLESLEVGNLPPSLKSLFVWDCPKLESIAERLDNN 389 (641)
Q Consensus 310 l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 389 (641)
....+ ..+. ..++|+.|++++ +.++. +.... .... ++|+.|+++++......+..+..+
T Consensus 303 ~~~~~--~~~~-------~l~~L~~L~Ls~-N~l~~-~~~~~---------~~~l-~~L~~L~L~~N~i~~~~~~~~~~l 361 (844)
T 3j0a_A 303 NKIAD--EAFY-------GLDNLQVLNLSY-NLLGE-LYSSN---------FYGL-PKVAYIDLQKNHIAIIQDQTFKFL 361 (844)
T ss_dssp CEECT--TTTT-------TCSSCCEEEEES-CCCSC-CCSCS---------CSSC-TTCCEEECCSCCCCCCCSSCSCSC
T ss_pred CCCCH--HHHC-------CCCCCCEEECCC-CCCCC-CCHHH---------HCCC-CCCCEEECCCCCCCCCCHHHHCCC
T ss_conf 98796--8836-------888999898989-97885-18788---------4689-999989898998776286661378
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC--CCCCCCCCCCEE
Q ss_conf 986479851356753134226688765514404677754569999999998579863566875351--012788984379
Q 006531 390 TSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEALP--KGLHNLTSLQHL 467 (641)
Q Consensus 390 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~--~~~~~l~~L~~L 467 (641)
++|+.|++++| .+..++ .+++|+.|.+++| .+..++.. ..+++.+++++|... .++ ..+..+++|+.|
T Consensus 362 ~~L~~L~Ls~N-~l~~i~----~~~~L~~L~l~~N-~l~~l~~~---~~~l~~L~ls~N~l~-~l~~~~~~~~l~~L~~L 431 (844)
T 3j0a_A 362 EKLQTLDLRDN-ALTTIH----FIPSIPDIFLSGN-KLVTLPKI---NLTANLIHLSENRLE-NLDILYFLLRVPHLQIL 431 (844)
T ss_dssp CCCCEEEEETC-CSCCCS----SCCSCSEEEEESC-CCCCCCCC---CTTCCEEECCSCCCC-SSTTHHHHTTCTTCCEE
T ss_pred CCCCEEECCCC-CCCCCC----CCCCCCHHCCCCC-CCCCCCCC---CCCCCEEECCCCCCC-CCCHHHHHHCCCCCCEE
T ss_conf 88999889899-778616----8898232005899-72314554---554312214567534-57556665127766666
Q ss_pred EEECCCCCCCCCC---CCCCCCCEEEECCCCCCHH---HHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9976986677678---9888744679405555102---100135334567896489980488986334421111378899
Q 006531 468 AIIGGEFPSLEED---GLPTNLQSLRIWGNMEIWK---SMIERGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTALP 541 (641)
Q Consensus 468 ~l~~~~l~~l~~~---~~~~~L~~L~l~~~~~l~~---~~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~ 541 (641)
++++|.+..++.. ..+++|+.|++++|..... .... ..+..+++|+.|++++ +.+..++.... .
T Consensus 432 ~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~--~~~~~l~~L~~L~Ls~--N~l~~~~~~~~------~ 501 (844)
T 3j0a_A 432 ILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW--DVFEGLSHLQVLYLNH--NYLNSLPPGVF------S 501 (844)
T ss_dssp EEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCS--SCSSCBCCEECCCCCH--HHHTTCCTTSS------S
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH--HHHCCCCCCCEEECCC--CCCCCCCHHHC------C
T ss_conf 677871255554333566873100247777364410135535--5544755365777889--85655395570------4
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCH
Q ss_conf 99883457414677762135443378875589863899986469999114455577248930
Q 006531 542 LPASLTSLRIVDFPNLERLSSSIVDLQNLTSLYLYDCPKLKYFPEKGLPSSLLQLDIYRCPL 603 (641)
Q Consensus 542 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~i~~c~~ 603 (641)
..++|+.|++++ +++..++..... ++|+.|++++|. +..++... ..+|+.+++++||.
T Consensus 502 ~l~~L~~L~Ls~-N~l~~l~~~~~~-~~L~~L~Ls~N~-l~~~~~~~-~~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 502 HLTALRGLSLNS-NRLTVLSHNDLP-ANLEILDISRNQ-LLAPNPDV-FVSLSVLDITHNKF 559 (844)
T ss_dssp SCCSCSEEEEES-CCCSSCCCCCCC-SCCCEEEEEEEC-CCCCCSCC-CSSCCEEEEEEECC
T ss_pred CHHHHHEEECCC-CCCCCCCHHHHH-CCCCEEECCCCC-CCCCCHHH-HCCCCEEEECCCCC
T ss_conf 501221569999-978745710110-045588898884-78889668-37768899319970
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=250.66 Aligned_cols=133 Identities=20% Similarity=0.097 Sum_probs=59.2
Q ss_pred CCCEEEEECCCCCCCCC---CCCCCCCCEEEECCCCCCHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 84379997698667767---898887446794055551021001353345678964899804889863344211113788
Q 006531 463 SLQHLAIIGGEFPSLEE---DGLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTA 539 (641)
Q Consensus 463 ~L~~L~l~~~~l~~l~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 539 (641)
+++.++++++.+..++. ...+++|+.|++++|........ ..+..+++|+.|++++ +.+...+... .....
T Consensus 402 ~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~~~~~L~~L~Ls~--N~l~~~~~~~-~~~~~ 475 (844)
T 3j0a_A 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD---QTPSENPSLEQLFLGE--NMLQLAWETE-LCWDV 475 (844)
T ss_dssp TCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSS---SSSCSCTTCCBCEEES--CCCSSSCCSC-CCSSC
T ss_pred CCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCC---CCCCCCCCCCCCCCCC--CCCCCCCCCC-CCHHH
T ss_conf 4312214567534575566651277666666778712555543---3356687310024777--7364410135-53555
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCH
Q ss_conf 999988345741467776213544-3378875589863899986469999114455577248930
Q 006531 540 LPLPASLTSLRIVDFPNLERLSSS-IVDLQNLTSLYLYDCPKLKYFPEKGLPSSLLQLDIYRCPL 603 (641)
Q Consensus 540 ~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~i~~c~~ 603 (641)
+...++|+.|+++++ .+..++.. +..+++|+.|++++| .+..++...+.++|+.|++++|..
T Consensus 476 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 476 FEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISRNQL 538 (844)
T ss_dssp SSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEEECC
T ss_pred HCCCCCCCEEECCCC-CCCCCCHHHCCCHHHHHEEECCCC-CCCCCCHHHHHCCCCEEECCCCCC
T ss_conf 447553657778898-565539557045012215699999-787457101100455888988847
Done!