BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006532
(641 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CHU|A Chain A, Structure Of L-Aspartate Oxidase: Implications For The
Succinate Dehydrogenase FUMARATE REDUCATSE FAMILY
Length = 540
Score = 400 bits (1028), Expect = e-111, Method: Compositional matrix adjust.
Identities = 240/568 (42%), Positives = 328/568 (57%), Gaps = 45/568 (7%)
Query: 66 LRTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQG 125
+ T+P SC D +IGSG AGL AL +A V V++K E +T YAQG
Sbjct: 1 MNTLPEHSC---------DVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFYAQG 51
Query: 126 GVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFD-----R 180
G++AV +DS++SH++DT++AGA +CD V V + ++ LI G FD
Sbjct: 52 GIAAVFDETDSIDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPN 111
Query: 181 GEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT-- 238
GE+ + HL REGGHSH RI+HAAD TGRE+E L+ ++ PNI V E A+DL+ +
Sbjct: 112 GEE-SYHLTREGGHSHRRILHAADATGREVETTLVSKALNHPNIRVLERTNAVDLIVSDK 170
Query: 239 --LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAH 296
L G V G N + V +K +LA+GGA +Y TTNP +++GDG+AMA
Sbjct: 171 IGLPGTRRVV-GAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAW 229
Query: 297 RAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPL 356
RA ++N+EF QFHPTAL + +FL+TEA+RG+G L RFMP
Sbjct: 230 RAGCRVANLEFNQFHPTAL---------YHPQARNFLLTEALRGEGAYLKRPDGTRFMPD 280
Query: 357 YDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDIT 416
+DER ELAPRD+VAR+ID ++K+ + LDISHKP + I HFP I + L G+D+T
Sbjct: 281 FDERGELAPRDIVARAIDHEMKRLGADCMFLDISHKPADFIRQHFPMIYEKLLGLGIDLT 340
Query: 417 SQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFAR 476
+P+P+VPAAHY CGGV G T+V GLY GEV+ TGLHGANR+ASNSLLE LV+
Sbjct: 341 QEPVPIVPAAHYTCGGVMVDDHGRTDVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGW 400
Query: 477 RAVQPSIDHKKSTSIDLSASNWWTRTVVPK-SLGCNVMHNILRRTKEVRKELQSIMWRYV 535
A + I + + D+S W + V + HN EL+ MW YV
Sbjct: 401 SAAE-DITRRMPYAHDISTLPPWDESRVENPDERVVIQHNW--------HELRLFMWDYV 451
Query: 536 GIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALA 595
GIVR+T L+ A RI L+ E + Y + V E+RNL A+L+V A+
Sbjct: 452 GIVRTTKRLERALRRITMLQQEIDEY-----YAHFRVSNNLLELRNLVQVAELIVRCAMM 506
Query: 596 RHESRGLHYMVDFPHVEENKRLPTIILP 623
R ESRGLH+ +D+P + + P+I+ P
Sbjct: 507 RKESRGLHFTLDYPELLTHSG-PSILSP 533
>pdb|1KNP|A Chain A, E. Coli L-aspartate Oxidase: Mutant R386l In Complex With
Succinate
pdb|1KNR|A Chain A, L-aspartate Oxidase: R386l Mutant
Length = 540
Score = 397 bits (1021), Expect = e-111, Method: Compositional matrix adjust.
Identities = 239/568 (42%), Positives = 327/568 (57%), Gaps = 45/568 (7%)
Query: 66 LRTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQG 125
+ T+P SC D +IGSG AGL AL +A V V++K E +T YAQG
Sbjct: 1 MNTLPEHSC---------DVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFYAQG 51
Query: 126 GVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFD-----R 180
G++AV +DS++SH++DT++AGA +CD V V + ++ LI G FD
Sbjct: 52 GIAAVFDETDSIDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPN 111
Query: 181 GEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT-- 238
GE+ + HL REGGHSH RI+HAAD TGRE+E L+ ++ PNI V E A+DL+ +
Sbjct: 112 GEE-SYHLTREGGHSHRRILHAADATGREVETTLVSKALNHPNIRVLERTNAVDLIVSDK 170
Query: 239 --LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAH 296
L G V G N + V +K +LA+GGA +Y TTNP +++GDG+AMA
Sbjct: 171 IGLPGTRRVV-GAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAW 229
Query: 297 RAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPL 356
RA ++N+EF QFHPTAL + +FL+TEA+RG+G L RFMP
Sbjct: 230 RAGCRVANLEFNQFHPTAL---------YHPQARNFLLTEALRGEGAYLKRPDGTRFMPD 280
Query: 357 YDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDIT 416
+DER ELAPRD+VAR+ID ++K+ + LDISHKP + I HFP I + L G+D+T
Sbjct: 281 FDERGELAPRDIVARAIDHEMKRLGADCMFLDISHKPADFIRQHFPMIYEKLLGLGIDLT 340
Query: 417 SQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFAR 476
+P+P+VPAAHY CGGV G T+V GLY GEV+ TGLHGAN +ASNSLLE LV+
Sbjct: 341 QEPVPIVPAAHYTCGGVMVDDHGRTDVEGLYAIGEVSYTGLHGANLMASNSLLECLVYGW 400
Query: 477 RAVQPSIDHKKSTSIDLSASNWWTRTVVPK-SLGCNVMHNILRRTKEVRKELQSIMWRYV 535
A + I + + D+S W + V + HN EL+ MW YV
Sbjct: 401 SAAE-DITRRMPYAHDISTLPPWDESRVENPDERVVIQHNW--------HELRLFMWDYV 451
Query: 536 GIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALA 595
GIVR+T L+ A RI L+ E + Y + V E+RNL A+L+V A+
Sbjct: 452 GIVRTTKRLERALRRITMLQQEIDEY-----YAHFRVSNNLLELRNLVQVAELIVRCAMM 506
Query: 596 RHESRGLHYMVDFPHVEENKRLPTIILP 623
R ESRGLH+ +D+P + + P+I+ P
Sbjct: 507 RKESRGLHFTLDYPELLTHSG-PSILSP 533
>pdb|2E5V|A Chain A, Crystal Structure Of L-Aspartate Oxidase From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
pdb|2E5V|B Chain B, Crystal Structure Of L-Aspartate Oxidase From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
Length = 472
Score = 244 bits (624), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 178/528 (33%), Positives = 267/528 (50%), Gaps = 70/528 (13%)
Query: 87 VIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIV 146
+IGSG+AGL + + + G + +T A+GGV+A + DS E H QDTI
Sbjct: 4 IIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIR 63
Query: 147 AGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMT 206
G LCD +TV V +E + I + G F+ ED L EGGH+ R++H D T
Sbjct: 64 VGDGLCDVKTVNYVTSEAKNVIETFESWGFEFE--ED----LRLEGGHTKRRVLHRTDET 117
Query: 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKV 266
GREI LL+ + + I + E D L + D G T E + +V + K+
Sbjct: 118 GREIFNFLLK-LAREEGIPIIE-----DRLVEIRVKDGKVTGFVT---EKRGLVEDVDKL 168
Query: 267 TLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKK 326
+LA+GG ++Y ++ GDGMA+A +A ++++MEFVQFHPT + +G
Sbjct: 169 -VLATGGYSYLYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDG------- 220
Query: 327 TRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVL 386
FL+TE +RG+G + N ERF+ YD+R ELAPRD+++R+I ++ K ++ V
Sbjct: 221 ---EVFLLTETLRGEGAQIINENGERFLFNYDKRGELAPRDILSRAIYIEMLKGHK--VF 275
Query: 387 LDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGL 446
+D+S E FP +A ++G + + IP+ PAAH++ GG+R ++GE+N+ L
Sbjct: 276 IDLS--KIEDFERKFPVVAKYLARHGHNYKVK-IPIFPAAHFVDGGIRVNIRGESNIVNL 332
Query: 447 YVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPK 506
Y GEV+ +GLHGANRLASNSLLE LVF + +D S T +
Sbjct: 333 YAIGEVSDSGLHGANRLASNSLLEGLVFGINLPR---------YVDSSWEGISTDDGIVH 383
Query: 507 SLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHG 566
S+ + N KE+R+ I W VGI+R+ L A TY
Sbjct: 384 SV--RISGNKTLSLKEIRR----INWENVGIIRNEEKLVKA----------INTY----- 422
Query: 567 WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEEN 614
+ +N + L +A R ESRG H+ D+P+ + N
Sbjct: 423 ---------SSSTQNEAIISYLTALAAEIRKESRGNHFREDYPYKDPN 461
>pdb|1ZOY|A Chain A, Crystal Structure Of Mitochondrial Respiratory Complex Ii
From Porcine Heart At 2.4 Angstroms
pdb|1ZP0|A Chain A, Crystal Structure Of Mitochondrial Respiratory Complex Ii
Bound With 3-Nitropropionate And
2-Thenoyltrifluoroacetone
pdb|3ABV|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-Biphenyl-3-Yl-2-Trifluoromethyl-Benzamide
pdb|3AE1|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Phenyl-2-(Trifluoromethyl)-Benzamide
pdb|3AE2|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Hydroxy-N-Phenyl-Benzamide
pdb|3AE3|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Nitro-N-Phenyl-Benzamide
pdb|3AE4|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Methyl-Benzamide
pdb|3AE5|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Methyl-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE6|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-(3-Isopropoxy-Phenyl)-Phthalamicacid
pdb|3AE7|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE8|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Isopropoxy-Phenyl)-2-Trifluoromethylbenzamide
pdb|3AE9|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Pentafluorophenyloxy-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEA|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Dimethylaminomethyl-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEB|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide
pdb|3AEC|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(1-Methylethyl)-Benzamid
pdb|3AED|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Phenyl-Benzamide
pdb|3AEE|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With Atpenin A5
pdb|3AEF|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii With An Empty Quinone-Binding Pocket
pdb|3AEG|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Biphenyl-3-Yl-2-Iodo-Benzamide
pdb|3SFD|A Chain A, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Pentachlorophenol
pdb|3SFE|A Chain A, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Thiabendazole
Length = 622
Score = 237 bits (604), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 177/533 (33%), Positives = 255/533 (47%), Gaps = 51/533 (9%)
Query: 106 TVAVITKAEPHESNTNYAQGGVSAVL--CPSDSVESHMQDTIVAGAYLCDDETVRVVCTE 163
A +TK P S+T AQGG++A L D+ H DT+ +L D + + + +
Sbjct: 44 NTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQ 103
Query: 164 GPDRIRELIAIGASFDRGEDGNLHLAREGGHS--------HHRIVHAADMTGREIERALL 215
P + EL G F R EDG ++ GG S HR AD TG + L
Sbjct: 104 APASVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQAHRCCCVADRTGHSLLHTLY 163
Query: 216 EAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275
+ + S F +FA+DLL + C GV L +E + R ++ T++A+GG G
Sbjct: 164 GRSLR-YDTSYFVEYFALDLLME----NGECRGVIALCIEDGSIHRIRARNTVVATGGYG 218
Query: 276 HIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLIT 335
Y S T+ +TGDG AM RA ++EFVQFHPT + G LIT
Sbjct: 219 RTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTGIYGAGC------------LIT 266
Query: 336 EAVRGDGGILYNLGMERFMPLYDERA-ELAPRDVVARSIDDQLKK-----RNEKYVLLDI 389
E RG+GGIL N ERFM Y A +LA RDVV+RS+ ++++ + +V L +
Sbjct: 267 EGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPEKDHVYLQL 326
Query: 390 SHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGET------- 441
H P E++ P I+ + + G+D+T +PIPV+P HY GG+ +G+
Sbjct: 327 HHLPPEQLAVRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQVLRHVNGQ 386
Query: 442 --NVRGLYVAGEVACTGLHGANRLASNSLLEALVFARR-AVQPSIDHKKSTSIDLSASNW 498
V GLY GE AC +HGANRL +NSLL+ +VF R A+ + + + N
Sbjct: 387 DQVVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAESCRPGDKVPSIKPNA 446
Query: 499 WTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEW 558
+V+ +L N RT E+R +Q M + + R + LQ +I L +
Sbjct: 447 GEESVM--NLDKLRFANGTIRTSELRLSMQKSMQSHAAVFRVGSVLQEGCEKILRLYGDL 504
Query: 559 E-TYLFEHG--WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDF 608
+ F+ G W V E E++NL CA + A AR ESRG H DF
Sbjct: 505 QHLKTFDRGMVWNTDLV--ETLELQNLMLCALQTIYGAEARKESRGAHAREDF 555
>pdb|1NEK|A Chain A, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Ubiquinone Bound
pdb|1NEN|A Chain A, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Dinitrophenol-17 Inhibitor Co-Crystallized At The
Ubiquinone Binding Site
pdb|2ACZ|A Chain A, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Atpenin A5 Inhibitor Co-Crystallized At The Ubiquinone
Binding Site
pdb|2WDQ|A Chain A, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDQ|E Chain E, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDQ|I Chain I, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDV|A Chain A, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDV|E Chain E, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDV|I Chain I, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDR|A Chain A, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WDR|E Chain E, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WDR|I Chain I, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WP9|A Chain A, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WP9|E Chain E, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WP9|I Chain I, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WS3|A Chain A, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WS3|E Chain E, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WS3|I Chain I, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WU2|A Chain A, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU2|E Chain E, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU2|I Chain I, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU5|A Chain A, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
pdb|2WU5|E Chain E, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
pdb|2WU5|I Chain I, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
Length = 588
Score = 235 bits (599), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 201/591 (34%), Positives = 290/591 (49%), Gaps = 81/591 (13%)
Query: 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPS--DS 136
V+ FD VIG+G AG+ AL++++ G T A+++K P S+T AQGG++ L + D+
Sbjct: 5 VREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDN 64
Query: 137 VESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSH 196
E HM DT+ Y+ D + + +C GP+ I EL +G F R +DG ++ GG S
Sbjct: 65 WEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSK 124
Query: 197 H-------RIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGV 249
+ R AAD TG + L + + + + ++F +A+DL+ DG C
Sbjct: 125 NFGGEQAARTAAAADRTGHALLHTLYQQNLKN-HTTIFSEWYALDLVKNQDGAVVGC--- 180
Query: 250 DTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQ 309
L +ET EVV F ++ T+LA+GGAG IY STTN + TGDG+ MA RA + +ME Q
Sbjct: 181 TALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQ 240
Query: 310 FHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRDV 368
FHPT +A G+ L+TE RG+GG L N ERFM Y A +LA RDV
Sbjct: 241 FHPTGIAGAGV------------LVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDV 288
Query: 369 VARSIDDQLKKRN------EKYVLLDISHKPTEKILSHFPNIAAECLKYG-LDITSQPIP 421
VARSI ++++ + L + H E + S P I + +D +PIP
Sbjct: 289 VARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIP 348
Query: 422 VVPAAHYMCGGVRAGLQGET----------NVRGLYVAGEVACTGLHGANRLASNSLLEA 471
V+P HYM GG+ + G+ V GL+ GE+AC +HGANRL NSLL+
Sbjct: 349 VIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDL 408
Query: 472 LVFARRA---VQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKE---VRK 525
+VF R A +Q SI + + D S S+ V SL N R ++ +RK
Sbjct: 409 VVFGRAAGLHLQESIAEQGALR-DASESD------VEASLDRLNRWNNNRNGEDPVAIRK 461
Query: 526 ELQSIMWRYVGIVRSTTSL------------QTAEWRIDELEAEWETYLFEHGWEQTFVG 573
LQ M + R ++ + R+D+ +E+ T
Sbjct: 462 ALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNTQR----------- 510
Query: 574 LEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP-HVEENKRLPTIILP 623
+E E+ NL A SA R ESRG H DFP +EN ++ LP
Sbjct: 511 VECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLP 561
>pdb|2B76|A Chain A, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
pdb|2B76|M Chain M, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
Length = 602
Score = 235 bits (599), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 164/527 (31%), Positives = 248/527 (47%), Gaps = 48/527 (9%)
Query: 107 VAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPD 166
+A+I+K P S+T AQGG +AV DS E H DT+ G +LC+ + V P
Sbjct: 33 IALISKVYPMRSHTVAAQGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPT 92
Query: 167 RIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISV 226
+ +L G + R DG++++ R GG R AAD TG + L + + P I
Sbjct: 93 EMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQR 152
Query: 227 FEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLV 286
F+ HF +D+L D G+ +N+ +V+ + ++A+GGAG +Y TN +
Sbjct: 153 FDEHFVLDILVD----DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGI 208
Query: 287 ATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILY 346
TGDGM MA + +MEFVQ+HPT L G+ L+TE RG+GGIL
Sbjct: 209 VTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGI------------LMTEGCRGEGGILV 256
Query: 347 NLGMERFMPLY------------DERAELAPRDVVARSIDDQLKKRNE------KYVLLD 388
N R++ Y ++ EL PRD V+++ + +K N V LD
Sbjct: 257 NKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLD 316
Query: 389 ISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLY 447
+ H +K+ P I Y G+D +PIPV P AHY GG+ ET ++GL+
Sbjct: 317 LRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLF 376
Query: 448 VAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKS 507
GE + GLHGANRL SNSL E +VF R A + + + + A+ V +
Sbjct: 377 AVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAGVEQR 436
Query: 508 LGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWE-------T 560
L V + ++R E+ M GI R+ +Q ++ EL+ ++ +
Sbjct: 437 LKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTS 496
Query: 561 YLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVD 607
+F L E+ + A+ + SA+AR ESRG H +D
Sbjct: 497 SVFNTDL------LYTIELGHGLNVAECMAHSAMARKESRGAHQRLD 537
>pdb|3P4R|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4R|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4P|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4P|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4Q|A Chain A, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4Q|M Chain M, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4S|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
pdb|3P4S|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
Length = 577
Score = 233 bits (595), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 163/527 (30%), Positives = 248/527 (47%), Gaps = 48/527 (9%)
Query: 107 VAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPD 166
+A+I+K P S+T A+GG +AV DS E H DT+ G +LC+ + V P
Sbjct: 33 IALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPT 92
Query: 167 RIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISV 226
+ +L G + R DG++++ R GG R AAD TG + L + + P I
Sbjct: 93 EMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQR 152
Query: 227 FEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLV 286
F+ HF +D+L D G+ +N+ +V+ + ++A+GGAG +Y TN +
Sbjct: 153 FDEHFVLDILVD----DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGI 208
Query: 287 ATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILY 346
TGDGM MA + +MEFVQ+HPT L G+ L+TE RG+GGIL
Sbjct: 209 VTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGI------------LMTEGCRGEGGILV 256
Query: 347 NLGMERFMPLY------------DERAELAPRDVVARSIDDQLKKRNE------KYVLLD 388
N R++ Y ++ EL PRD V+++ + +K N V LD
Sbjct: 257 NKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLD 316
Query: 389 ISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLY 447
+ H +K+ P I Y G+D +PIPV P AHY GG+ ET ++GL+
Sbjct: 317 LRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLF 376
Query: 448 VAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKS 507
GE + GLHGANRL SNSL E +VF R A + + + + A+ V +
Sbjct: 377 AVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAGVEQR 436
Query: 508 LGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWE-------T 560
L V + ++R E+ M GI R+ +Q ++ EL+ ++ +
Sbjct: 437 LKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTS 496
Query: 561 YLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVD 607
+F L E+ + A+ + SA+AR ESRG H +D
Sbjct: 497 SVFNTDL------LYTIELGHGLNVAECMAHSAMARKESRGAHQRLD 537
>pdb|1KF6|A Chain A, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KF6|M Chain M, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KFY|A Chain A, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1KFY|M Chain M, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1L0V|A Chain A, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1L0V|M Chain M, Quinol-Fumarate Reductase With Menaquinol Molecules
Length = 602
Score = 233 bits (595), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 163/527 (30%), Positives = 248/527 (47%), Gaps = 48/527 (9%)
Query: 107 VAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPD 166
+A+I+K P S+T A+GG +AV DS E H DT+ G +LC+ + V P
Sbjct: 33 IALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPT 92
Query: 167 RIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISV 226
+ +L G + R DG++++ R GG R AAD TG + L + + P I
Sbjct: 93 EMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQR 152
Query: 227 FEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLV 286
F+ HF +D+L D G+ +N+ +V+ + ++A+GGAG +Y TN +
Sbjct: 153 FDEHFVLDILVD----DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGI 208
Query: 287 ATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILY 346
TGDGM MA + +MEFVQ+HPT L G+ L+TE RG+GGIL
Sbjct: 209 VTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGI------------LMTEGCRGEGGILV 256
Query: 347 NLGMERFMPLY------------DERAELAPRDVVARSIDDQLKKRNE------KYVLLD 388
N R++ Y ++ EL PRD V+++ + +K N V LD
Sbjct: 257 NKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLD 316
Query: 389 ISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLY 447
+ H +K+ P I Y G+D +PIPV P AHY GG+ ET ++GL+
Sbjct: 317 LRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLF 376
Query: 448 VAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKS 507
GE + GLHGANRL SNSL E +VF R A + + + + A+ V +
Sbjct: 377 AVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAGVEQR 436
Query: 508 LGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWE-------T 560
L V + ++R E+ M GI R+ +Q ++ EL+ ++ +
Sbjct: 437 LKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTS 496
Query: 561 YLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVD 607
+F L E+ + A+ + SA+AR ESRG H +D
Sbjct: 497 SVFNTDL------LYTIELGHGLNVAECMAHSAMARKESRGAHQRLD 537
>pdb|3CIR|A Chain A, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
pdb|3CIR|M Chain M, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
Length = 602
Score = 232 bits (591), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 162/527 (30%), Positives = 247/527 (46%), Gaps = 48/527 (9%)
Query: 107 VAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPD 166
+A+I+K P S+T A+GG +AV DS E H DT+ G +LC+ + V P
Sbjct: 33 IALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPT 92
Query: 167 RIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISV 226
+ +L G + R DG++++ R GG R AAD TG + L + + P I
Sbjct: 93 EMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQR 152
Query: 227 FEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLV 286
F+ HF +D+L D G+ +N+ +V+ + ++A+GGAG +Y TN +
Sbjct: 153 FDEHFVLDILVD----DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGI 208
Query: 287 ATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILY 346
TGDGM MA + +MEFVQ+HP L G+ L+TE RG+GGIL
Sbjct: 209 VTGDGMGMALSHGVPLRDMEFVQYHPAGLPGSGI------------LMTEGCRGEGGILV 256
Query: 347 NLGMERFMPLY------------DERAELAPRDVVARSIDDQLKKRNE------KYVLLD 388
N R++ Y ++ EL PRD V+++ + +K N V LD
Sbjct: 257 NKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLD 316
Query: 389 ISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLY 447
+ H +K+ P I Y G+D +PIPV P AHY GG+ ET ++GL+
Sbjct: 317 LRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLF 376
Query: 448 VAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKS 507
GE + GLHGANRL SNSL E +VF R A + + + + A+ V +
Sbjct: 377 AVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAGVEQR 436
Query: 508 LGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWE-------T 560
L V + ++R E+ M GI R+ +Q ++ EL+ ++ +
Sbjct: 437 LKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTS 496
Query: 561 YLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVD 607
+F L E+ + A+ + SA+AR ESRG H +D
Sbjct: 497 SVFNTDL------LYTIELGHGLNVAECMAHSAMARKESRGAHQRLD 537
>pdb|1YQ3|A Chain A, Avian Respiratory Complex Ii With Oxaloacetate And
Ubiquinone
pdb|1YQ4|A Chain A, Avian Respiratory Complex Ii With 3-Nitropropionate And
Ubiquinone
pdb|2FBW|A Chain A, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2FBW|N Chain N, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2H88|A Chain A, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
pdb|2H88|N Chain N, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
pdb|2H89|A Chain A, Avian Respiratory Complex Ii With Malonate Bound
pdb|2WQY|A Chain A, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
pdb|2WQY|N Chain N, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
Length = 621
Score = 231 bits (590), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 173/532 (32%), Positives = 255/532 (47%), Gaps = 51/532 (9%)
Query: 107 VAVITKAEPHESNTNYAQGGVSAVL--CPSDSVESHMQDTIVAGAYLCDDETVRVVCTEG 164
A +TK P S+T AQGG++A L D+ H DT+ +L D + + + +
Sbjct: 44 TACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRWHFYDTVKGSDWLGDQDAIHYMTEQA 103
Query: 165 PDRIRELIAIGASFDRGEDGNLHLAREGGHS--------HHRIVHAADMTGREIERALLE 216
P + EL G F R E+G ++ GG S HR AD TG + L
Sbjct: 104 PAAVIELENYGMPFSRTEEGKIYQRAFGGQSLQFGKGGQAHRCCCVADRTGHSLLHTLYG 163
Query: 217 AVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276
+ + S F +FA+DLL + C GV L +E + RF +K T++A+GG G
Sbjct: 164 RSLR-YDTSYFVEYFALDLLME----NGECRGVIALCIEDGTIHRFRAKNTVIATGGYGR 218
Query: 277 IYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITE 336
Y S T+ +TGDG AM RA ++EFVQFHPT + G LITE
Sbjct: 219 TYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTGIYGAGC------------LITE 266
Query: 337 AVRGDGGILYNLGMERFMPLYDERA-ELAPRDVVARSIDDQLKK-----RNEKYVLLDIS 390
RG+GGIL N ERFM Y A +LA RDVV+RS+ ++++ + +V L +
Sbjct: 267 GCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGCGPEKDHVYLQLH 326
Query: 391 HKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGET-------- 441
H P +++ + P I+ + + G+D+T +PIPV+P HY GG+ +G+
Sbjct: 327 HLPPQQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQVITHVNGED 386
Query: 442 -NVRGLYVAGEVACTGLHGANRLASNSLLEALVFARR-AVQPSIDHKKSTSIDLSASNWW 499
V GLY GE A +HGANRL +NSLL+ +VF R A+ + K + N
Sbjct: 387 KVVPGLYACGEAASASVHGANRLGANSLLDLVVFGRACALTIAETCKPGEPVPSIKPNAG 446
Query: 500 TRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEW- 558
+V +L + RT E R +Q M + + R+ + LQ ++ ++ +
Sbjct: 447 EESVA--NLDKLRFADGTIRTSEARLNMQKTMQSHAAVFRTGSILQEGCEKLSQIYRDLA 504
Query: 559 ETYLFEHG--WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDF 608
F+ G W V E E++NL CA + A AR ESRG H D+
Sbjct: 505 HLKTFDRGIVWNTDLV--ETLELQNLMLCALQTIYGAEARKESRGAHAREDY 554
>pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS3|A Chain A, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS3|D Chain D, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|A Chain A, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|D Chain D, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|1E7P|G Chain G, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|J Chain J, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 656
Score = 224 bits (570), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 184/602 (30%), Positives = 283/602 (47%), Gaps = 80/602 (13%)
Query: 79 SVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEP-HESNTNYAQGGVSAVLCPS--- 134
V+Y D VIG G+AGL A+ + G ++ P S++ AQGG+ A L S
Sbjct: 2 KVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMS 61
Query: 135 --DSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGN------- 185
D+ + H DT+ + CD + R+ P IREL A G + R G+
Sbjct: 62 DGDNEDLHFMDTVKGSDWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINA 121
Query: 186 --------------LHLAREGGHSHHRIVHAADMTGREIERALLEAVVSD---PNISVFE 228
+H GG R + AD TG +L AV ++ +S+ +
Sbjct: 122 QKTTITEEDFRHGLIHSRDFGGTKKWRTCYTADATGH----TMLFAVANECLKLGVSIQD 177
Query: 229 HHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVAT 288
AI L+ D C+G ++ T +++ +++K TL+A+GG G IY +TTN +V
Sbjct: 178 RKEAIALIHQ----DGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCE 233
Query: 289 GDGMAMA-HRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYN 347
G G A+A A + NME VQFHPT L G+ L+TE RGDGGIL +
Sbjct: 234 GTGTAIALETGIAQLGNMEAVQFHPTPLFPSGI------------LLTEGCRGDGGILRD 281
Query: 348 LGMERFMPLYD-ERAELAPRDVVARSIDDQLKKRNE------KYVLLDISHKPTEKILSH 400
+ RFMP Y+ E+ ELA RDVV+R + + ++K +++ LDIS + I ++
Sbjct: 282 VDGHRFMPDYEPEKKELASRDVVSRRMIEHIRKGKGVQSPYGQHLWLDISILGRKHIETN 341
Query: 401 FPNIAAECLKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHG 459
++ C + G+D + PV+P HY GG+R +GE ++GL+ AGE AC +HG
Sbjct: 342 LRDVQEICEYFAGIDPAEKWAPVLPMQHYSMGGIRTDYRGEAKLKGLFSAGEAACWDMHG 401
Query: 460 ANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRR 519
NRL NS+ EA+V + +H +T +DL T+T+ G L
Sbjct: 402 FNRLGGNSVSEAVVAGMIVGEYFAEHCANTQVDLE-----TKTLEKFVKGQEAYMKSLVE 456
Query: 520 TK------EVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVG 573
+K +++ ++ +M VGI R L+ A ++EL + + ++
Sbjct: 457 SKGTEDVFKIKNRMKDVMDDNVGIFRDGPHLEKAVKELEELYKKSKNVGIKNKRLHANPE 516
Query: 574 L-EACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEE----NKRL-----PTIILP 623
L EA + + A V AL R ESRG H D+P ++ N+ L P LP
Sbjct: 517 LEEAYRVPMMLKVALCVAKGALDRTESRGAHNREDYPKRDDINWLNRTLASWPNPEQTLP 576
Query: 624 SL 625
+L
Sbjct: 577 TL 578
>pdb|2BS2|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS2|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 660
Score = 224 bits (570), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 184/602 (30%), Positives = 283/602 (47%), Gaps = 80/602 (13%)
Query: 79 SVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEP-HESNTNYAQGGVSAVLCPS--- 134
V+Y D VIG G+AGL A+ + G ++ P S++ AQGG+ A L S
Sbjct: 2 KVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMS 61
Query: 135 --DSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGN------- 185
D+ + H DT+ + CD + R+ P IREL A G + R G+
Sbjct: 62 DGDNEDLHFMDTVKGSDWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINA 121
Query: 186 --------------LHLAREGGHSHHRIVHAADMTGREIERALLEAVVSD---PNISVFE 228
+H GG R + AD TG +L AV ++ +S+ +
Sbjct: 122 QKTTITEEDFRHGLIHSRDFGGTKKWRTCYTADATGH----TMLFAVANECLKLGVSIQD 177
Query: 229 HHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVAT 288
AI L+ D C+G ++ T +++ +++K TL+A+GG G IY +TTN +V
Sbjct: 178 RKEAIALIHQ----DGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCE 233
Query: 289 GDGMAMA-HRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYN 347
G G A+A A + NME VQFHPT L G+ L+TE RGDGGIL +
Sbjct: 234 GTGTAIALETGIAQLGNMEAVQFHPTPLFPSGI------------LLTEGCRGDGGILRD 281
Query: 348 LGMERFMPLYD-ERAELAPRDVVARSIDDQLKKRNE------KYVLLDISHKPTEKILSH 400
+ RFMP Y+ E+ ELA RDVV+R + + ++K +++ LDIS + I ++
Sbjct: 282 VDGHRFMPDYEPEKKELASRDVVSRRMIEHIRKGKGVQSPYGQHLWLDISILGRKHIETN 341
Query: 401 FPNIAAECLKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHG 459
++ C + G+D + PV+P HY GG+R +GE ++GL+ AGE AC +HG
Sbjct: 342 LRDVQEICEYFAGIDPAEKWAPVLPMQHYSMGGIRTDYRGEAKLKGLFSAGEAACWDMHG 401
Query: 460 ANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRR 519
NRL NS+ EA+V + +H +T +DL T+T+ G L
Sbjct: 402 FNRLGGNSVSEAVVAGMIVGEYFAEHCANTQVDLE-----TKTLEKFVKGQEAYMKSLVE 456
Query: 520 TK------EVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVG 573
+K +++ ++ +M VGI R L+ A ++EL + + ++
Sbjct: 457 SKGTEDVFKIKNRMKDVMDDNVGIFRDGPHLEKAVKELEELYKKSKNVGIKNKRLHANPE 516
Query: 574 L-EACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEE----NKRL-----PTIILP 623
L EA + + A V AL R ESRG H D+P ++ N+ L P LP
Sbjct: 517 LEEAYRVPMMLKVALCVAKGALDRTESRGAHNREDYPKRDDINWLNRTLASWPNPEQTLP 576
Query: 624 SL 625
+L
Sbjct: 577 TL 578
>pdb|1QLB|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
Length = 656
Score = 223 bits (567), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 183/602 (30%), Positives = 283/602 (47%), Gaps = 80/602 (13%)
Query: 79 SVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEP-HESNTNYAQGGVSAVLCPS--- 134
V+Y D VIG G+AGL A+ + G ++ P S++ AQGG+ A L S
Sbjct: 2 KVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMS 61
Query: 135 --DSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGN------- 185
D+ + H DT+ + CD + R+ P IREL A G + R G+
Sbjct: 62 DGDNEDLHFMDTVKGSDWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINA 121
Query: 186 --------------LHLAREGGHSHHRIVHAADMTGREIERALLEAVVSD---PNISVFE 228
+H GG R + AD TG +L AV ++ +S+ +
Sbjct: 122 QKTTITEEDFRHGLIHSRDFGGTKKWRTCYTADATGH----TMLFAVANECLKLGVSIQD 177
Query: 229 HHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVAT 288
AI L+ D C+G ++ T +++ +++K TL+A+GG G IY +TTN +V
Sbjct: 178 RKEAIALIHQ----DGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCE 233
Query: 289 GDGMAMA-HRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYN 347
G G A+A A + NME VQFHPT L G+ L+TE RGDGGIL +
Sbjct: 234 GTGTAIALETGIAQLGNMEAVQFHPTPLFPSGI------------LLTEGCRGDGGILRD 281
Query: 348 LGMERFMPLYD-ERAELAPRDVVARSIDDQLKKRNE------KYVLLDISHKPTEKILSH 400
+ RFMP Y+ E+ ELA RDVV+R + + ++K +++ LDIS + I ++
Sbjct: 282 VDGHRFMPDYEPEKKELASRDVVSRRMIEHIRKGKGVQSPYGQHLWLDISILGRKHIETN 341
Query: 401 FPNIAAECLKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHG 459
++ C + G+D + PV+P HY GG+R +GE ++GL+ AGE AC +HG
Sbjct: 342 LRDVQEICEYFAGIDPAEKWAPVLPMQHYSMGGIRTDYRGEAKLKGLFSAGEAACWDMHG 401
Query: 460 ANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRR 519
NRL NS+ EA+V + +H +T +DL T+T+ G L
Sbjct: 402 FNRLGGNSVSEAVVAGMIVGEYFAEHCANTQVDLE-----TKTLEKFVKGQEAYMKSLVE 456
Query: 520 TK------EVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVG 573
+K +++ ++ +M VGI R L+ + ++EL + + ++
Sbjct: 457 SKGTEDVFKIKNRMKDVMDDNVGIFRDGPHLEKSVKELEELYKKSKNVGIKNKRLHANPE 516
Query: 574 L-EACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEE----NKRL-----PTIILP 623
L EA + + A V AL R ESRG H D+P ++ N+ L P LP
Sbjct: 517 LEEAYRVPMMLKVALCVAKGALDRTESRGAHNREDYPKRDDINWLNRTLASWPNPEQTLP 576
Query: 624 SL 625
+L
Sbjct: 577 TL 578
>pdb|3VR8|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VR8|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VRB|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
pdb|3VRB|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
Length = 645
Score = 218 bits (556), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 173/545 (31%), Positives = 255/545 (46%), Gaps = 66/545 (12%)
Query: 107 VAVITKAEPHESNTNYAQGGVSAVLCP--SDSVESHMQDTIVAGAYLCDDETVRVVCTEG 164
AV+TK P S+T AQGG++A L D + H DT +L D + +
Sbjct: 67 TAVVTKMFPTRSHTTAAQGGINAALGSMNPDDWKWHFYDTAKGSDWLGDQNAMHYLTRNA 126
Query: 165 PDRIRELIAIGASFDRGEDGNLHLAREGGHSHH--------RIVHAADMTGREIERALLE 216
+ + EL G F R +G ++ GG S++ R AD TG + L
Sbjct: 127 VEAVTELENFGMPFSRTPEGKIYQRSFGGQSNNYGKGGVAKRTCCVADRTGHSMLHTLYG 186
Query: 217 AVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276
+ + + F +FA+DLL C GV L +E + RF SK T++A+GG G
Sbjct: 187 NSLR-CHCTFFIEYFALDLLMD----KGRCVGVIALCLEDGTIHRFRSKRTIVATGGYGR 241
Query: 277 IYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITE 336
Y S T + TGDG A+A RA + ++EF+QFHPT + G LITE
Sbjct: 242 AYFSCTTAHMNTGDGTALATRAGIALEDLEFIQFHPTGIYGVGC------------LITE 289
Query: 337 AVRGDGGILYNLGMERFMPLYDERA-ELAPRDVVARS-----IDDQLKKRNEKYVLLDIS 390
RG+GG L N ERFM Y +A +LA RDVV+R+ ++ + + ++ L +
Sbjct: 290 GSRGEGGFLVNSEGERFMERYAPKAKDLASRDVVSRAETIEIMEGRGVGPEKDHIYLQLH 349
Query: 391 HKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVPAAHYMCGGVRAGLQ----------G 439
H P E++ P I+ + G+D+T +PIPV+P HY GG+ + G
Sbjct: 350 HLPAEQLHQRLPGISETAKIFAGVDVTKEPIPVIPTVHYNMGGIPTNYKAQVIKYTKEGG 409
Query: 440 ETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWW 499
+ V GLY GE AC +HGANRL +NSLL+A+VF R SI+ K+ D
Sbjct: 410 DKIVPGLYACGECACHSVHGANRLGANSLLDAVVFGRAC---SINIKEELKPDEKIPE-- 464
Query: 500 TRTVVPKSLGCNVMHNI--LRR------TKEVRKELQSIMWRYVGIVRSTTSLQTAEWRI 551
+P+ G + N+ +R T E+R +Q M ++ G+ R L ++
Sbjct: 465 ----LPEGAGEESIANLDAVRYANGDVPTAELRLTMQKTMQKHAGVFRRGDILAEGVKKM 520
Query: 552 DELEAE---WETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDF 608
+L E +T W E+ E++NL A + +A R ESRG H DF
Sbjct: 521 MDLSKELKRLKTTDRSLIWNSDLT--ESLELQNLMLNATQTIVAAENRKESRGAHARDDF 578
Query: 609 PHVEE 613
P E+
Sbjct: 579 PKRED 583
>pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
pdb|1QO8|D Chain D, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
Length = 566
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 136/548 (24%), Positives = 221/548 (40%), Gaps = 115/548 (20%)
Query: 11 NFHFGGIRCKGQSCQQASLVSSLTFNGCIQRELSWFLRFQRFNFSHSPVSENWKS-LRTV 69
N H G I C SC + N C ++ + FS + ++W
Sbjct: 57 NSHLGDINC--TSCHKGHEEPKFYCNECHSFDI------KPMPFSDAKKKKSWDDGWDQD 108
Query: 70 PVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVS 128
+ + G + V+G+G AG +L K G V ++ KA N+ + GG++
Sbjct: 109 KIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMN 168
Query: 129 AVLCPS-------DSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRG 181
AV D VE ++D + G D + V ++ + D ++ L ++GA+ D
Sbjct: 169 AVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANLD-- 226
Query: 182 EDGNLHLAREGGHSHHRI--VHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 239
L R GG R H +G EI L +A + I + + L+
Sbjct: 227 -----DLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAA-KEQGIDTRLNSRVVKLVVND 280
Query: 240 DGP--DAVCHGVDTLNVETQEVVRFISKVTLLASGGAG-------HIYPS-----TTNPL 285
D AV HG T +K +LA+GG G + P+ ++N +
Sbjct: 281 DHSVVGAVVHGKHT------GYYMIGAKSVVLATGGYGMNKEMIAYYRPTMKDMTSSNNI 334
Query: 286 VATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGIL 345
ATGDG+ MA A ++++++VQ HPT +++ LI+E VRG G ++
Sbjct: 335 TATGDGVLMAKEIGASMTDIDWVQAHPTV------------GKDSRILISETVRGVGAVM 382
Query: 346 YNLGMERFMPLYDERAELAPRDVVARSI------------DDQLKKRNE---KYVLLDIS 390
N RF+ +EL RD + +I D+QL K+ + Y L++
Sbjct: 383 VNKDGNRFI------SELTTRDKASDAILKQPGQFAWIIFDNQLYKKAKMVRGYDHLEML 436
Query: 391 HKPT----------------EKILSHFPNIAA--ECLKYG-----LDITSQP---IPVVP 424
+K K +S + A + +G L++T P + V P
Sbjct: 437 YKGDTVEQLAKSTGMKVADLAKTVSDYNGYVASGKDTAFGRADMPLNMTQSPYYAVKVAP 496
Query: 425 AAHYMCGGVRAG-------LQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARR 477
H+ GGV LQ + + GL+ AGEV G+HG NRL N++ + +VF R
Sbjct: 497 GIHHTMGGVAINTTASVLDLQSKP-IDGLFAAGEV-TGGVHGYNRLGGNAIADTVVFGRI 554
Query: 478 AVQPSIDH 485
A + H
Sbjct: 555 AGDNAAKH 562
>pdb|1KSU|A Chain A, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1KSU|B Chain B, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 117/460 (25%), Positives = 188/460 (40%), Gaps = 102/460 (22%)
Query: 98 ALEVAKHGTVAVITKAEPH-ESNTNYAQGGVSAVLCP-------SDSVESHMQDTIVAGA 149
A+ G ++ + EP N A GG++A +DS E +DT+ G
Sbjct: 142 AISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQ 201
Query: 150 YLCDDETVRVVCTEGPDRIRELIAIGASF-DRGEDGNLHLAREGGHSHHRIVHAADMTGR 208
+ D V+V+ + D + + A+GA D G G + R HR A + G
Sbjct: 202 NINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRA-----HRPTGGAGV-GA 255
Query: 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKV-- 266
+ + L + V NI + + I++L G V + V+ + K
Sbjct: 256 HVVQVLYDNAVK-RNIDLRMNTRGIEVLKDDKGT------VKGILVKGMYKGYYWVKADA 308
Query: 267 TLLASGG-------AGHIYPS-----TTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 314
+LA+GG + PS +TN A GDG+ +A A + +M+++Q HPT
Sbjct: 309 VILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT- 367
Query: 315 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSI- 373
L +K ++TEAVRG+G IL N +RF+ E+ RD + +I
Sbjct: 368 -----LSVK------GGVMVTEAVRGNGAILVNREGKRFVN------EITTRDKASAAIL 410
Query: 374 -----------DDQLKK---RNEKYVLLDISHKPTEKI-LSHFPNIAAECL-----KYGL 413
DD ++K + +KY+ L ++ + L I + L +Y
Sbjct: 411 AQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNS 470
Query: 414 DITS-------QP-------------IPVVPAAHYMCGGVRAGLQGETN------VRGLY 447
++S +P I V P HY GGV + E + GLY
Sbjct: 471 LVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHYTMGGVMIDTKAEVMNAKKQVIPGLY 530
Query: 448 VAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487
AGEV G+HGANRL N++ + + F R A + + + K
Sbjct: 531 GAGEV-TGGVHGANRLGGNAISDIITFGRLAGEEAAKYSK 569
>pdb|1P2H|A Chain A, H61m Mutant Of Flavocytochrome C3
Length = 571
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 116/460 (25%), Positives = 188/460 (40%), Gaps = 102/460 (22%)
Query: 98 ALEVAKHGTVAVITKAEPH-ESNTNYAQGGVSAVLCP-------SDSVESHMQDTIVAGA 149
A+ G ++ + EP N A GG++A +DS E +DT+ G
Sbjct: 142 AISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQ 201
Query: 150 YLCDDETVRVVCTEGPDRIRELIAIGASF-DRGEDGNLHLAREGGHSHHRIVHAADMTGR 208
+ D V+V+ + D + + A+GA D G G + R HR A + G
Sbjct: 202 NINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRA-----HRPTGGAGV-GA 255
Query: 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKV-- 266
+ + L + V NI + + I++L G V + V+ + K
Sbjct: 256 HVVQVLYDNAVK-RNIDLRMNTRGIEVLKDDKGT------VKGILVKGMYKGYYWVKADA 308
Query: 267 TLLASGG-------AGHIYPS-----TTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 314
+LA+GG + PS +TN A GDG+ +A A + +M+++Q HPT
Sbjct: 309 VILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT- 367
Query: 315 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSI- 373
L +K ++TEAVRG+G IL N +RF+ E+ RD + +I
Sbjct: 368 -----LSVK------GGVMVTEAVRGNGAILVNREGKRFVN------EITTRDKASAAIL 410
Query: 374 -----------DDQLKK---RNEKYVLLDISHKPTEKI-LSHFPNIAAECL-----KYGL 413
DD ++K + +KY+ L ++ + L I + L +Y
Sbjct: 411 AQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNS 470
Query: 414 DITS-------QP-------------IPVVPAAHYMCGGVRAGLQGETN------VRGLY 447
++S +P I V P H+ GGV + E + GLY
Sbjct: 471 LVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLY 530
Query: 448 VAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487
AGEV G+HGANRL N++ + + F R A + + + K
Sbjct: 531 GAGEV-TGGVHGANRLGGNAISDIITFGRLAGEEAAKYSK 569
>pdb|1P2E|A Chain A, H61a Mutant Of Flavocytochrome C3
Length = 571
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 116/460 (25%), Positives = 188/460 (40%), Gaps = 102/460 (22%)
Query: 98 ALEVAKHGTVAVITKAEPH-ESNTNYAQGGVSAVLCP-------SDSVESHMQDTIVAGA 149
A+ G ++ + EP N A GG++A +DS E +DT+ G
Sbjct: 142 AISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQ 201
Query: 150 YLCDDETVRVVCTEGPDRIRELIAIGASF-DRGEDGNLHLAREGGHSHHRIVHAADMTGR 208
+ D V+V+ + D + + A+GA D G G + R HR A + G
Sbjct: 202 NINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRA-----HRPTGGAGV-GA 255
Query: 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKV-- 266
+ + L + V NI + + I++L G V + V+ + K
Sbjct: 256 HVVQVLYDNAVK-RNIDLRMNTRGIEVLKDDKGT------VKGILVKGMYKGYYWVKADA 308
Query: 267 TLLASGG-------AGHIYPS-----TTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 314
+LA+GG + PS +TN A GDG+ +A A + +M+++Q HPT
Sbjct: 309 VILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT- 367
Query: 315 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSI- 373
L +K ++TEAVRG+G IL N +RF+ E+ RD + +I
Sbjct: 368 -----LSVK------GGVMVTEAVRGNGAILVNREGKRFVN------EITTRDKASAAIL 410
Query: 374 -----------DDQLKK---RNEKYVLLDISHKPTEKI-LSHFPNIAAECL-----KYGL 413
DD ++K + +KY+ L ++ + L I + L +Y
Sbjct: 411 AQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNS 470
Query: 414 DITS-------QP-------------IPVVPAAHYMCGGVRAGLQGETN------VRGLY 447
++S +P I V P H+ GGV + E + GLY
Sbjct: 471 LVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLY 530
Query: 448 VAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487
AGEV G+HGANRL N++ + + F R A + + + K
Sbjct: 531 GAGEV-TGGVHGANRLGGNAISDIITFGRLAGEEAAKYSK 569
>pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina
pdb|1Y0P|A Chain A, Flavocytochrome C3 With Mesaconate Bound
Length = 571
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 116/460 (25%), Positives = 188/460 (40%), Gaps = 102/460 (22%)
Query: 98 ALEVAKHGTVAVITKAEPH-ESNTNYAQGGVSAVLCP-------SDSVESHMQDTIVAGA 149
A+ G ++ + EP N A GG++A +DS E +DT+ G
Sbjct: 142 AISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQ 201
Query: 150 YLCDDETVRVVCTEGPDRIRELIAIGASF-DRGEDGNLHLAREGGHSHHRIVHAADMTGR 208
+ D V+V+ + D + + A+GA D G G + R HR A + G
Sbjct: 202 NINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRA-----HRPTGGAGV-GA 255
Query: 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKV-- 266
+ + L + V NI + + I++L G V + V+ + K
Sbjct: 256 HVVQVLYDNAVK-RNIDLRMNTRGIEVLKDDKGT------VKGILVKGMYKGYYWVKADA 308
Query: 267 TLLASGG-------AGHIYPS-----TTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 314
+LA+GG + PS +TN A GDG+ +A A + +M+++Q HPT
Sbjct: 309 VILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT- 367
Query: 315 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSI- 373
L +K ++TEAVRG+G IL N +RF+ E+ RD + +I
Sbjct: 368 -----LSVK------GGVMVTEAVRGNGAILVNREGKRFVN------EITTRDKASAAIL 410
Query: 374 -----------DDQLKK---RNEKYVLLDISHKPTEKI-LSHFPNIAAECL-----KYGL 413
DD ++K + +KY+ L ++ + L I + L +Y
Sbjct: 411 AQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNS 470
Query: 414 DITS-------QP-------------IPVVPAAHYMCGGVRAGLQGETN------VRGLY 447
++S +P I V P H+ GGV + E + GLY
Sbjct: 471 LVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLY 530
Query: 448 VAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487
AGEV G+HGANRL N++ + + F R A + + + K
Sbjct: 531 GAGEV-TGGVHGANRLGGNAISDIITFGRLAGEEAAKYSK 569
>pdb|1JRZ|A Chain A, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRZ|B Chain B, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 119/454 (26%), Positives = 189/454 (41%), Gaps = 90/454 (19%)
Query: 98 ALEVAKHGTVAVITKAEPH-ESNTNYAQGGVSAVLCP-------SDSVESHMQDTIVAGA 149
A+ G ++ + EP N A GG++A +DS E +DT+ G
Sbjct: 142 AISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQ 201
Query: 150 YLCDDETVRVVCTEGPDRIRELIAIGASF-DRGEDGNLHLAREGGHSHHRIVHAADMTGR 208
+ D V+V+ + D + + A+GA D G G + R HR A + G
Sbjct: 202 NINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRA-----HRPTGGAGV-GA 255
Query: 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKV-- 266
+ + L + V NI + + I++L G V + V+ + K
Sbjct: 256 HVVQVLYDNAVK-RNIDLRMNTRGIEVLKDDKGT------VKGILVKGMYKGYYWVKADA 308
Query: 267 TLLASGG-------AGHIYPS-----TTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 314
+LA+GG + PS +TN A GDG+ +A A + +M+++Q HPT
Sbjct: 309 VILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT- 367
Query: 315 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERF---MPLYDER--AELAPRDVV 369
L +K ++TEAVRG+G IL N +RF + YD+ A LA
Sbjct: 368 -----LSVK------GGVMVTEAVRGNGAILVNREGKRFVNEITTYDKASAAILAQTGKS 416
Query: 370 ARSI-DDQLKK---RNEKYVLLDISHKPTEKI-LSHFPNIAAECL-----KYGLDITS-- 417
A I DD ++K + +KY+ L ++ + L I + L +Y ++S
Sbjct: 417 AYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNSLVSSGK 476
Query: 418 -----QP-------------IPVVPAAHYMCGGVRAGLQGETN------VRGLYVAGEVA 453
+P I V P H+ GGV + E + GLY AGEV
Sbjct: 477 DTDFERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLYGAGEV- 535
Query: 454 CTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487
G+HGANRL N++ + + F R A + + + K
Sbjct: 536 TGGVHGANRLGGNAISDIITFGRLAGEEAAKYSK 569
>pdb|1JRY|A Chain A, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRY|B Chain B, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 115/460 (25%), Positives = 188/460 (40%), Gaps = 102/460 (22%)
Query: 98 ALEVAKHGTVAVITKAEPH-ESNTNYAQGGVSAVLCP-------SDSVESHMQDTIVAGA 149
A+ G ++ + EP N A GG++A +DS E +DT+ G
Sbjct: 142 AISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQ 201
Query: 150 YLCDDETVRVVCTEGPDRIRELIAIGASF-DRGEDGNLHLAREGGHSHHRIVHAADMTGR 208
+ D V+V+ + D + + A+GA D G G + R HR A + G
Sbjct: 202 NINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRA-----HRPTGGAGV-GA 255
Query: 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKV-- 266
+ + L + V NI + + I++L G V + V+ + K
Sbjct: 256 HVVQVLYDNAVK-RNIDLRMNTRGIEVLKDDKGT------VKGILVKGMYKGYYWVKADA 308
Query: 267 TLLASGG-------AGHIYPS-----TTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 314
+LA+GG + PS +TN A GDG+ +A A + +M+++Q HPT
Sbjct: 309 VILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT- 367
Query: 315 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSI- 373
L +K ++TEAVRG+G IL N +RF+ E+ +D + +I
Sbjct: 368 -----LSVK------GGVMVTEAVRGNGAILVNREGKRFVN------EITTKDKASAAIL 410
Query: 374 -----------DDQLKK---RNEKYVLLDISHKPTEKI-LSHFPNIAAECL-----KYGL 413
DD ++K + +KY+ L ++ + L I + L +Y
Sbjct: 411 AQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNS 470
Query: 414 DITS-------QP-------------IPVVPAAHYMCGGVRAGLQGETN------VRGLY 447
++S +P I V P H+ GGV + E + GLY
Sbjct: 471 LVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLY 530
Query: 448 VAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487
AGEV G+HGANRL N++ + + F R A + + + K
Sbjct: 531 GAGEV-TGGVHGANRLGGNAISDIITFGRLAGEEAAKYSK 569
>pdb|1KSS|A Chain A, Crystal Structure Of His505ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 116/460 (25%), Positives = 187/460 (40%), Gaps = 102/460 (22%)
Query: 98 ALEVAKHGTVAVITKAEPH-ESNTNYAQGGVSAVLCP-------SDSVESHMQDTIVAGA 149
A+ G ++ + EP N A GG++A +DS E +DT+ G
Sbjct: 142 AISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQ 201
Query: 150 YLCDDETVRVVCTEGPDRIRELIAIGASF-DRGEDGNLHLAREGGHSHHRIVHAADMTGR 208
+ D V+V+ + D + + A+GA D G G + R HR A + G
Sbjct: 202 NINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRA-----HRPTGGAGV-GA 255
Query: 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKV-- 266
+ + L + V NI + + I++L G V + V+ + K
Sbjct: 256 HVVQVLYDNAVK-RNIDLRMNTRGIEVLKDDKGT------VKGILVKGMYKGYYWVKADA 308
Query: 267 TLLASGG-------AGHIYPS-----TTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 314
+LA+GG + PS +TN A GDG+ +A A + +M+++Q HPT
Sbjct: 309 VILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT- 367
Query: 315 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSI- 373
L +K ++TEAVRG+G IL N +RF+ E+ RD + +I
Sbjct: 368 -----LSVK------GGVMVTEAVRGNGAILVNREGKRFVN------EITTRDKASAAIL 410
Query: 374 -----------DDQLKK---RNEKYVLLDISHKPTEKI-LSHFPNIAAECL-----KYGL 413
DD ++K + +KY+ L ++ + L I + L +Y
Sbjct: 411 AQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNS 470
Query: 414 DITS-------QP-------------IPVVPAAHYMCGGVRAGLQGETN------VRGLY 447
++S +P I V P H GGV + E + GLY
Sbjct: 471 LVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHATMGGVMIDTKAEVMNAKKQVIPGLY 530
Query: 448 VAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487
AGEV G+HGANRL N++ + + F R A + + + K
Sbjct: 531 GAGEV-TGGVHGANRLGGNAISDIITFGRLAGEEAAKYSK 569
>pdb|2B7S|A Chain A, R381k Mutant Of Flavocytochrome C3
Length = 571
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 115/460 (25%), Positives = 188/460 (40%), Gaps = 102/460 (22%)
Query: 98 ALEVAKHGTVAVITKAEPH-ESNTNYAQGGVSAVLCP-------SDSVESHMQDTIVAGA 149
A+ G ++ + EP N A GG++A +DS E +DT+ G
Sbjct: 142 AISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQ 201
Query: 150 YLCDDETVRVVCTEGPDRIRELIAIGASF-DRGEDGNLHLAREGGHSHHRIVHAADMTGR 208
+ D V+V+ + D + + A+GA D G G + R HR A + G
Sbjct: 202 NINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRA-----HRPTGGAGV-GA 255
Query: 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKV-- 266
+ + L + V NI + + I++L G V + V+ + K
Sbjct: 256 HVVQVLYDNAVK-RNIDLRMNTRGIEVLKDDKGT------VKGILVKGMYKGYYWVKADA 308
Query: 267 TLLASGG-------AGHIYPS-----TTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 314
+LA+GG + PS +TN A GDG+ +A A + +M+++Q HPT
Sbjct: 309 VILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT- 367
Query: 315 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSI- 373
L +K ++TEAV+G+G IL N +RF+ E+ RD + +I
Sbjct: 368 -----LSVK------GGVMVTEAVKGNGAILVNREGKRFVN------EITTRDKASAAIL 410
Query: 374 -----------DDQLKK---RNEKYVLLDISHKPTEKI-LSHFPNIAAECL-----KYGL 413
DD ++K + +KY+ L ++ + L I + L +Y
Sbjct: 411 AQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNS 470
Query: 414 DITS-------QP-------------IPVVPAAHYMCGGVRAGLQGETN------VRGLY 447
++S +P I V P H+ GGV + E + GLY
Sbjct: 471 LVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLY 530
Query: 448 VAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487
AGEV G+HGANRL N++ + + F R A + + + K
Sbjct: 531 GAGEV-TGGVHGANRLGGNAISDIITFGRLAGEEAAKYSK 569
>pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRX|B Chain B, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 115/455 (25%), Positives = 189/455 (41%), Gaps = 92/455 (20%)
Query: 98 ALEVAKHGTVAVITKAEPH-ESNTNYAQGGVSAVLCP-------SDSVESHMQDTIVAGA 149
A+ G ++ + EP N A GG++A +DS E +DT+ G
Sbjct: 142 AISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQ 201
Query: 150 YLCDDETVRVVCTEGPDRIRELIAIGASF-DRGEDGNLHLAREGGHSHHRIVHAADMTGR 208
+ D V+V+ + D + + A+GA D G G + R HR A + G
Sbjct: 202 NINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRA-----HRPTGGAGV-GA 255
Query: 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKV-- 266
+ + L + V NI + + I++L G V + V+ + K
Sbjct: 256 HVVQVLYDNAVK-RNIDLRMNTRGIEVLKDDKGT------VKGILVKGMYKGYYWVKADA 308
Query: 267 TLLASGG-------AGHIYPS-----TTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 314
+LA+GG + PS +TN A GDG+ +A A + +M+++Q HPT
Sbjct: 309 VILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT- 367
Query: 315 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARS-- 372
L +K ++TEAVRG+G IL N +RF+ A+ A ++A++
Sbjct: 368 -----LSVK------GGVMVTEAVRGNGAILVNREGKRFVNEI-TTADKASAAILAQTGK 415
Query: 373 -----IDDQLKK---RNEKYVLLDISHKPTEKI-LSHFPNIAAECL-----KYGLDITS- 417
DD ++K + +KY+ L ++ + L I + L +Y ++S
Sbjct: 416 SAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNSLVSSG 475
Query: 418 ------QP-------------IPVVPAAHYMCGGVRAGLQGETN------VRGLYVAGEV 452
+P I V P H+ GGV + E + GLY AGEV
Sbjct: 476 KDTDFERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLYGAGEV 535
Query: 453 ACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487
G+HGANRL N++ + + F R A + + + K
Sbjct: 536 -TGGVHGANRLGGNAISDIITFGRLAGEEAAKYSK 569
>pdb|2B7R|A Chain A, Structure Of E378d Mutant Flavocytochrome C3
Length = 571
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 115/460 (25%), Positives = 188/460 (40%), Gaps = 102/460 (22%)
Query: 98 ALEVAKHGTVAVITKAEPH-ESNTNYAQGGVSAVLCP-------SDSVESHMQDTIVAGA 149
A+ G ++ + EP N A GG++A +DS E +DT+ G
Sbjct: 142 AISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQ 201
Query: 150 YLCDDETVRVVCTEGPDRIRELIAIGASF-DRGEDGNLHLAREGGHSHHRIVHAADMTGR 208
+ D V+V+ + D + + A+GA D G G + R HR A + G
Sbjct: 202 NINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRA-----HRPTGGAGV-GA 255
Query: 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKV-- 266
+ + L + V NI + + I++L G V + V+ + K
Sbjct: 256 HVVQVLYDNAVK-RNIDLRMNTRGIEVLKDDKGT------VKGILVKGMYKGYYWVKADA 308
Query: 267 TLLASGG-------AGHIYPS-----TTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 314
+LA+GG + PS +TN A GDG+ +A A + +M+++Q HPT
Sbjct: 309 VILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT- 367
Query: 315 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSI- 373
L +K ++T+AVRG+G IL N +RF+ E+ RD + +I
Sbjct: 368 -----LSVK------GGVMVTDAVRGNGAILVNREGKRFVN------EITTRDKASAAIL 410
Query: 374 -----------DDQLKK---RNEKYVLLDISHKPTEKI-LSHFPNIAAECL-----KYGL 413
DD ++K + +KY+ L ++ + L I + L +Y
Sbjct: 411 AQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNS 470
Query: 414 DITS-------QP-------------IPVVPAAHYMCGGVRAGLQGETN------VRGLY 447
++S +P I V P H+ GGV + E + GLY
Sbjct: 471 LVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLY 530
Query: 448 VAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487
AGEV G+HGANRL N++ + + F R A + + + K
Sbjct: 531 GAGEV-TGGVHGANRLGGNAISDIITFGRLAGEEAAKYSK 569
>pdb|1Q9I|A Chain A, The A251c:s430c Double Mutant Of Flavocytochrome C3 From
Shewanella Frigidimarina
Length = 571
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 115/460 (25%), Positives = 187/460 (40%), Gaps = 102/460 (22%)
Query: 98 ALEVAKHGTVAVITKAEPH-ESNTNYAQGGVSAVLCP-------SDSVESHMQDTIVAGA 149
A+ G ++ + EP N A GG++A +DS E +DT+ G
Sbjct: 142 AISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQ 201
Query: 150 YLCDDETVRVVCTEGPDRIRELIAIGASF-DRGEDGNLHLAREGGHSHHRIVHAADMTGR 208
+ D V+V+ + D + + A+GA D G G + R HR + G
Sbjct: 202 NINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRA-----HRPTGGCGV-GA 255
Query: 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKV-- 266
+ + L + V NI + + I++L G V + V+ + K
Sbjct: 256 HVVQVLYDNAVK-RNIDLRMNTRGIEVLKDDKGT------VKGILVKGMYKGYYWVKADA 308
Query: 267 TLLASGG-------AGHIYPS-----TTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 314
+LA+GG + PS +TN A GDG+ +A A + +M+++Q HPT
Sbjct: 309 VILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT- 367
Query: 315 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSI- 373
L +K ++TEAVRG+G IL N +RF+ E+ RD + +I
Sbjct: 368 -----LSVK------GGVMVTEAVRGNGAILVNREGKRFVN------EITTRDKASAAIL 410
Query: 374 -----------DDQLKK---RNEKYVLLDISHKPTEKI-LSHFPNIAAECL-----KYGL 413
DD ++K + +KY+ L ++ + L I + L +Y
Sbjct: 411 AQTGKSAYLIFDDSVRKSLCKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNS 470
Query: 414 DITS-------QP-------------IPVVPAAHYMCGGVRAGLQGETN------VRGLY 447
++S +P I V P H+ GGV + E + GLY
Sbjct: 471 LVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLY 530
Query: 448 VAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487
AGEV G+HGANRL N++ + + F R A + + + K
Sbjct: 531 GAGEV-TGGVHGANRLGGNAISDIITFGRLAGEEAAKYSK 569
>pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina Histidine
365 Mutated To Alanine
Length = 571
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 115/460 (25%), Positives = 187/460 (40%), Gaps = 102/460 (22%)
Query: 98 ALEVAKHGTVAVITKAEPH-ESNTNYAQGGVSAVLCP-------SDSVESHMQDTIVAGA 149
A+ G ++ + EP N A GG++A +DS E +DT+ G
Sbjct: 142 AISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQ 201
Query: 150 YLCDDETVRVVCTEGPDRIRELIAIGASF-DRGEDGNLHLAREGGHSHHRIVHAADMTGR 208
+ D V+V+ + D + + A+GA D G G + R HR A + G
Sbjct: 202 NINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRA-----HRPTGGAGV-GA 255
Query: 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKV-- 266
+ + L + V NI + + I++L G V + V+ + K
Sbjct: 256 HVVQVLYDNAVK-RNIDLRMNTRGIEVLKDDKGT------VKGILVKGMYKGYYWVKADA 308
Query: 267 TLLASGG-------AGHIYPS-----TTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 314
+LA+GG + PS +TN A GDG+ +A A + +M+++Q PT
Sbjct: 309 VILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAAPT- 367
Query: 315 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSI- 373
L +K ++TEAVRG+G IL N +RF+ E+ RD + +I
Sbjct: 368 -----LSVK------GGVMVTEAVRGNGAILVNREGKRFVN------EITTRDKASAAIL 410
Query: 374 -----------DDQLKK---RNEKYVLLDISHKPTEKI-LSHFPNIAAECL-----KYGL 413
DD ++K + +KY+ L ++ + L I + L +Y
Sbjct: 411 AQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNS 470
Query: 414 DITS-------QP-------------IPVVPAAHYMCGGVRAGLQGETN------VRGLY 447
++S +P I V P H+ GGV + E + GLY
Sbjct: 471 LVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLY 530
Query: 448 VAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487
AGEV G+HGANRL N++ + + F R A + + + K
Sbjct: 531 GAGEV-TGGVHGANRLGGNAISDIITFGRLAGEEAAKYSK 569
>pdb|1M64|A Chain A, Crystal Structure Of Q363f Mutant Flavocytochrome C3
pdb|1M64|B Chain B, Crystal Structure Of Q363f Mutant Flavocytochrome C3
Length = 571
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 115/460 (25%), Positives = 187/460 (40%), Gaps = 102/460 (22%)
Query: 98 ALEVAKHGTVAVITKAEPH-ESNTNYAQGGVSAVLCP-------SDSVESHMQDTIVAGA 149
A+ G ++ + EP N A GG++A +DS E +DT+ G
Sbjct: 142 AISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQ 201
Query: 150 YLCDDETVRVVCTEGPDRIRELIAIGASF-DRGEDGNLHLAREGGHSHHRIVHAADMTGR 208
+ D V+V+ + D + + A+GA D G G + R HR A + G
Sbjct: 202 NINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRA-----HRPTGGAGV-GA 255
Query: 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKV-- 266
+ + L + V NI + + I++L G V + V+ + K
Sbjct: 256 HVVQVLYDNAVK-RNIDLRMNTRGIEVLKDDKGT------VKGILVKGMYKGYYWVKADA 308
Query: 267 TLLASGG-------AGHIYPS-----TTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 314
+LA+GG + PS +TN A GDG+ +A A + +M+++ HPT
Sbjct: 309 VILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIFAHPT- 367
Query: 315 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSI- 373
L +K ++TEAVRG+G IL N +RF+ E+ RD + +I
Sbjct: 368 -----LSVK------GGVMVTEAVRGNGAILVNREGKRFVN------EITTRDKASAAIL 410
Query: 374 -----------DDQLKK---RNEKYVLLDISHKPTEKI-LSHFPNIAAECL-----KYGL 413
DD ++K + +KY+ L ++ + L I + L +Y
Sbjct: 411 AQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNS 470
Query: 414 DITS-------QP-------------IPVVPAAHYMCGGVRAGLQGETN------VRGLY 447
++S +P I V P H+ GGV + E + GLY
Sbjct: 471 LVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLY 530
Query: 448 VAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487
AGEV G+HGANRL N++ + + F R A + + + K
Sbjct: 531 GAGEV-TGGVHGANRLGGNAISDIITFGRLAGEEAAKYSK 569
>pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|B Chain B, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|C Chain C, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|D Chain D, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
Length = 572
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 113/446 (25%), Positives = 172/446 (38%), Gaps = 105/446 (23%)
Query: 105 GTVAVITKAEP-HESNTNYAQGGVSAV-------LCPSDSVESHMQDTIVAGAYLCDDET 156
G ++ + EP NT A GG++A L D + + DT+ G + D E
Sbjct: 149 GAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPEL 208
Query: 157 VRVVCTEGPDRIRELIAIGASF-DRGEDGNLHLARE---------GGHSHHRIVHAADMT 206
V+V+ D I L ++GA D G G + R G H + A
Sbjct: 209 VKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKR 268
Query: 207 GREIE------RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVV 260
G +I R L +A + V + ++ DAV + V
Sbjct: 269 GTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKA----DAVVIAAGGFAKNNERVS 324
Query: 261 RFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGL 320
++ K+ + TN ATGDG+ +A +A A ++E++Q HPT G+
Sbjct: 325 KYDPKLKGFKA----------TNHPGATGDGLDVALQAGAATRDLEYIQAHPTYSPAGGV 374
Query: 321 PIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSI------- 373
+ITEAVRG+G I+ N RFM E+ RD + +I
Sbjct: 375 ------------MITEAVRGNGAIVVNREGNRFMN------EITTRDKASAAILQQKGES 416
Query: 374 -----DDQLKKR---NEKYVLLDI--SHKPTEKILSHFPNIAAEC----------LKYGL 413
DD ++K E YV L+I K E++ AAE +K G
Sbjct: 417 AYLVFDDSIRKSLKAIEGYVHLNIVKEGKTIEELAKQIDVPAAELAKTVTAYNGFVKSGK 476
Query: 414 DITSQ--------------PIPVVPAAHYMCGGVRAGLQGETN-------VRGLYVAGEV 452
D + + + PA H+ GG+ + E + GLY AGEV
Sbjct: 477 DAQFERPDLPRELVVAPFYALEIAPAVHHTMGGLVIDTKAEVKSEKTGKPITGLYAAGEV 536
Query: 453 ACTGLHGANRLASNSLLEALVFARRA 478
G+HGANRL N++ + + + R A
Sbjct: 537 -TGGVHGANRLGGNAISDIVTYGRIA 561
>pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
pdb|1LJ1|B Chain B, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
Length = 571
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 114/455 (25%), Positives = 188/455 (41%), Gaps = 92/455 (20%)
Query: 98 ALEVAKHGTVAVITKAEPH-ESNTNYAQGGVSAVLCP-------SDSVESHMQDTIVAGA 149
A+ G ++ + EP N A GG++A +DS E +DT+ G
Sbjct: 142 AISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQ 201
Query: 150 YLCDDETVRVVCTEGPDRIRELIAIGASF-DRGEDGNLHLAREGGHSHHRIVHAADMTGR 208
+ D V+V+ + D + + A+GA D G G + R HR A + G
Sbjct: 202 NINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRA-----HRPTGGAGV-GA 255
Query: 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKV-- 266
+ + L + V NI + + I++L G V + V+ + K
Sbjct: 256 HVVQVLYDNAVK-RNIDLRMNTRGIEVLKDDKGT------VKGILVKGMYKGYYWVKADA 308
Query: 267 TLLASGG-------AGHIYPS-----TTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 314
+LA+GG + PS +TN A GDG+ +A A + +M+++ HPT
Sbjct: 309 VILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIFAHPT- 367
Query: 315 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARS-- 372
L +K ++TEAVRG+G IL N +RF+ A+ A ++A++
Sbjct: 368 -----LSVK------GGVMVTEAVRGNGAILVNREGKRFVNEI-TTADKASAAILAQTGK 415
Query: 373 -----IDDQLKK---RNEKYVLLDISHKPTEKI-LSHFPNIAAECL-----KYGLDITS- 417
DD ++K + +KY+ L ++ + L I + L +Y ++S
Sbjct: 416 SAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNSLVSSG 475
Query: 418 ------QP-------------IPVVPAAHYMCGGVRAGLQGETN------VRGLYVAGEV 452
+P I V P H+ GGV + E + GLY AGEV
Sbjct: 476 KDTDFERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLYGAGEV 535
Query: 453 ACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487
G+HGANRL N++ + + F R A + + + K
Sbjct: 536 -TGGVHGANRLGGNAISDIITFGRLAGEEAAKYSK 569
>pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Complexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4E|A Chain A, Crystal Structure Of The Flavocytochrome C Fumarate
Reductase Of Shewanella Putrefaciens Strain Mr-1
Complexed With Fumarate
Length = 572
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 113/446 (25%), Positives = 175/446 (39%), Gaps = 105/446 (23%)
Query: 105 GTVAVITKAEP-HESNTNYAQGGVSAV-------LCPSDSVESHMQDTIVAGAYLCDDET 156
G ++ + EP NT A GG++A L D + + DT+ G + D E
Sbjct: 149 GAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPEL 208
Query: 157 VRVVCTEGPDRIRELIAIGASF-DRGEDGNLHLARE---------GGHSHHRIVHAADMT 206
V+V+ D I L ++GA D G G + R G H + A
Sbjct: 209 VKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKR 268
Query: 207 GREIE------RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVV 260
G +I R L +A + V + ++ DAV + V
Sbjct: 269 GTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKA----DAVVIAAGGFAKNNERVS 324
Query: 261 RFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGL 320
++ K+ + TN ATGDG+ +A +A A +++++Q HPT G+
Sbjct: 325 KYDPKLKGFKA----------TNHPGATGDGLDVALQAGAATRDLQYIQAHPTYSPAGGV 374
Query: 321 PIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSI------- 373
+ITEAVRG+G I+ N RFM E+ RD + +I
Sbjct: 375 ------------MITEAVRGNGAIVVNREGNRFMN------EITTRDKASAAILQQKGES 416
Query: 374 -----DDQLKKR---NEKYVLLDI--SHKPTEKILSHFPNIAAEC----------LKYGL 413
DD ++K E YV L+I K E++ AAE +K G
Sbjct: 417 AYLVFDDSIRKSLKAIEGYVHLNIVKEGKTIEELAKQIDVPAAELAKTVTAYNGFVKSGK 476
Query: 414 DITSQ--------------PIPVVPAAHYMCGGV----RAGLQGETNVR---GLYVAGEV 452
D + + + PA H+ GG+ +A ++ E + GLY AGEV
Sbjct: 477 DAQFERPDLPRELVVAPFYALEIAPAVHHTMGGLVIDTKAEVKSEKTAKPITGLYAAGEV 536
Query: 453 ACTGLHGANRLASNSLLEALVFARRA 478
G+HGANRL N++ + + + R A
Sbjct: 537 -TGGVHGANRLGGNAISDIVTYGRIA 561
>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin
Reductase, C- Terminal 3-Residue Truncation
Length = 488
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGG 126
G + FD VIG G GL A E A+ G VAV EP T + GG
Sbjct: 2 GGQQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGG 51
>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
pdb|1ZKQ|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
Length = 517
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGG 126
G + FD VIG G GL A E A+ G VAV EP T + GG
Sbjct: 28 GGQQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGG 77
>pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5V|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5W|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L6I|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|1L6I|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|2ASV|A Chain A, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2ASV|B Chain B, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2AV6|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AV6|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AZD|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
pdb|2AZD|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
Length = 796
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 568 EQTFVGLEACEMRNLFCCAKLVVSSALARHE--SRGLHYMVDFPHVEENKRLPTIILPSL 625
+ F G + M+ F CA V+ L RH R LH + D+ ++ N PTI +P L
Sbjct: 259 DNAFEGKKLRLMQQYFQCA-CSVADILRRHHLAGRKLHELADYEVIQLNDTHPTIAIPEL 317
Query: 626 VNCTWSSRQL 635
+ Q+
Sbjct: 318 LRVLIDEHQM 327
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1QM5|B Chain B, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|A Chain A, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|B Chain B, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
Length = 796
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 579 MRNLFCCAKLVVSSALARHE--SRGLHYMVDFPHVEENKRLPTIILPSLVNCTWSSRQL 635
M+ F CA V+ L RH R LH + D+ ++ N PTI +P L+ Q+
Sbjct: 270 MQQYFQCA-CSVADILRRHHLAGRKLHELADYEVIQLNDTHPTIAIPELLRVLIDEHQM 327
>pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
pdb|2ECP|B Chain B, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
Length = 796
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 579 MRNLFCCAKLVVSSALARHE--SRGLHYMVDFPHVEENKRLPTIILPSLVNCTWSSRQL 635
M+ F CA V+ L RH R LH + D+ ++ N PTI +P L+ Q+
Sbjct: 270 MQQYFQCA-CSVADILRRHHLAGRELHELADYEVIQLNDTHPTIAIPELLRVLIDEHQM 327
>pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
pdb|1AHP|B Chain B, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
Length = 797
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 579 MRNLFCCAKLVVSSALARHE--SRGLHYMVDFPHVEENKRLPTIILPSLVNCTWSSRQL 635
M+ F CA V+ L RH R LH + D+ ++ N PTI +P L+ Q+
Sbjct: 271 MQQYFQCA-CSVADILRRHHLAGRELHELADYEVIQLNDTHPTIAIPELLRVLIDEHQM 328
>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
pdb|4B1B|B Chain B, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
Length = 542
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGT-VAVITKAEPHESNTNYAQGG 126
+D+ VIG G G+ A E A HG V + +P T + GG
Sbjct: 43 YDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGG 87
>pdb|2P3E|A Chain A, Crystal Structure Of Aq1208 From Aquifex Aeolicus
pdb|2P3E|B Chain B, Crystal Structure Of Aq1208 From Aquifex Aeolicus
Length = 420
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 165 PDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNI 224
P ++ L +GA D G L+LA++ G RIV+A G+ E+ L +AV S+ +
Sbjct: 70 PHLVKLLGELGAGADIVSGGELYLAKKAGIPPERIVYAG--VGK-TEKELTDAVDSEILM 126
Query: 225 SVFEHHFAIDLLTTLDG 241
E +D+L + G
Sbjct: 127 FNVESRQELDVLNEIAG 143
>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
Length = 397
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 81 KYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPH 116
K FD+ ++G+G AG A +A G +I PH
Sbjct: 28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPH 63
>pdb|3OG3|A Chain A, Crystal Structure Of An Artificial Thermostable
(Ba)8-Barrel Protein From Identical Half Barrels
Length = 251
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 23/110 (20%)
Query: 235 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAM 294
LLT++D D G DT E++RF+ P TT P++A+G M
Sbjct: 48 LLTSID-RDGTKSGYDT------EMIRFVR--------------PLTTLPIIASGGAGKM 86
Query: 295 AHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLIT--EAVRGDG 342
H +A ++ + V + A+ + L + +T + ++ +A R DG
Sbjct: 87 EHFLEAFLAGADKVSINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDG 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,077,712
Number of Sequences: 62578
Number of extensions: 778110
Number of successful extensions: 2340
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2123
Number of HSP's gapped (non-prelim): 114
length of query: 641
length of database: 14,973,337
effective HSP length: 105
effective length of query: 536
effective length of database: 8,402,647
effective search space: 4503818792
effective search space used: 4503818792
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)