Query 006532
Match_columns 641
No_of_seqs 472 out of 4195
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 00:39:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006532.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006532hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0029 NadB Aspartate oxidase 100.0 4E-109 9E-114 845.4 45.2 505 84-625 9-513 (518)
2 PLN02815 L-aspartate oxidase 100.0 6E-100 1E-104 841.3 56.8 560 78-637 25-585 (594)
3 PRK07395 L-aspartate oxidase; 100.0 4.8E-94 1E-98 792.5 51.6 529 78-634 5-553 (553)
4 TIGR01176 fum_red_Fp fumarate 100.0 5.9E-94 1.3E-98 796.1 50.9 521 81-622 2-552 (580)
5 PLN00128 Succinate dehydrogena 100.0 1.2E-93 2.7E-98 798.1 52.8 537 79-635 47-616 (635)
6 PRK06452 sdhA succinate dehydr 100.0 2.1E-93 4.6E-98 792.3 52.8 523 80-622 3-540 (566)
7 PRK08626 fumarate reductase fl 100.0 5.9E-93 1.3E-97 796.7 51.4 521 80-621 3-566 (657)
8 PRK08958 sdhA succinate dehydr 100.0 1.9E-92 4.1E-97 786.2 51.8 523 81-622 6-559 (588)
9 PTZ00139 Succinate dehydrogena 100.0 2.2E-92 4.8E-97 788.9 52.4 523 79-621 26-580 (617)
10 PRK09231 fumarate reductase fl 100.0 3.2E-92 6.9E-97 784.4 52.4 522 80-622 2-553 (582)
11 PRK07573 sdhA succinate dehydr 100.0 8.7E-92 1.9E-96 786.2 53.6 554 52-622 7-611 (640)
12 PRK08641 sdhA succinate dehydr 100.0 1.6E-91 3.5E-96 779.9 53.7 525 82-622 3-551 (589)
13 PRK07057 sdhA succinate dehydr 100.0 3E-91 6.6E-96 777.9 54.2 526 78-622 8-562 (591)
14 PRK09078 sdhA succinate dehydr 100.0 2.4E-91 5.3E-96 779.8 52.7 521 80-622 10-564 (598)
15 PRK09077 L-aspartate oxidase; 100.0 1E-90 2.2E-95 767.7 56.7 519 80-623 6-533 (536)
16 PRK08205 sdhA succinate dehydr 100.0 2.4E-90 5.3E-95 771.3 54.1 522 81-622 4-553 (583)
17 PRK07803 sdhA succinate dehydr 100.0 2.8E-90 6E-95 774.2 53.9 543 80-638 6-602 (626)
18 PRK06069 sdhA succinate dehydr 100.0 2.4E-90 5.3E-95 772.0 53.1 526 79-621 2-550 (577)
19 TIGR01811 sdhA_Bsu succinate d 100.0 2E-90 4.3E-95 771.2 52.3 524 85-621 1-574 (603)
20 PRK05945 sdhA succinate dehydr 100.0 4.6E-90 9.9E-95 768.7 51.9 522 81-621 2-548 (575)
21 PRK07804 L-aspartate oxidase; 100.0 9E-89 2E-93 752.2 54.0 507 78-622 12-523 (541)
22 PRK07512 L-aspartate oxidase; 100.0 2.2E-88 4.7E-93 744.5 50.6 489 79-623 6-497 (513)
23 PRK06263 sdhA succinate dehydr 100.0 7.7E-88 1.7E-92 747.4 53.7 519 80-621 5-531 (543)
24 TIGR01812 sdhA_frdA_Gneg succi 100.0 1.5E-87 3.1E-92 750.9 54.0 522 84-622 1-539 (566)
25 PRK05675 sdhA succinate dehydr 100.0 1E-87 2.2E-92 746.7 49.4 509 95-622 1-541 (570)
26 PRK08071 L-aspartate oxidase; 100.0 3.5E-87 7.7E-92 734.4 51.4 496 82-621 3-500 (510)
27 TIGR00551 nadB L-aspartate oxi 100.0 2.2E-86 4.8E-91 727.1 52.2 487 82-609 2-488 (488)
28 TIGR01816 sdhA_forward succina 100.0 2.9E-85 6.2E-90 727.1 50.0 502 101-622 1-532 (565)
29 COG1053 SdhA Succinate dehydro 100.0 2.2E-86 4.7E-91 722.3 39.7 535 80-634 4-558 (562)
30 PRK08401 L-aspartate oxidase; 100.0 1.6E-78 3.6E-83 660.6 46.6 456 83-619 2-458 (466)
31 TIGR02061 aprA adenosine phosp 100.0 9E-78 1.9E-82 664.3 47.7 515 84-635 1-610 (614)
32 PRK08275 putative oxidoreducta 100.0 4.4E-77 9.4E-82 662.3 48.2 500 80-621 7-535 (554)
33 PRK06854 adenylylsulfate reduc 100.0 4.6E-76 1E-80 657.3 48.7 517 80-635 9-600 (608)
34 PRK13800 putative oxidoreducta 100.0 2E-76 4.3E-81 688.1 46.6 498 78-622 9-542 (897)
35 KOG2403 Succinate dehydrogenas 100.0 2.9E-76 6.2E-81 603.8 22.6 538 81-637 54-624 (642)
36 PRK06175 L-aspartate oxidase; 100.0 1.4E-65 3E-70 552.9 44.1 428 81-549 3-431 (433)
37 KOG2404 Fumarate reductase, fl 100.0 1.3E-50 2.7E-55 389.4 20.6 373 84-481 11-466 (477)
38 PRK06481 fumarate reductase fl 100.0 7.7E-49 1.7E-53 431.5 37.1 375 79-487 58-504 (506)
39 PTZ00306 NADH-dependent fumara 100.0 1.7E-46 3.8E-51 445.9 39.1 393 79-490 406-906 (1167)
40 PF00890 FAD_binding_2: FAD bi 100.0 2E-45 4.4E-50 398.0 35.6 365 84-468 1-417 (417)
41 TIGR01813 flavo_cyto_c flavocy 100.0 1.2E-45 2.6E-50 401.9 31.7 366 84-480 1-439 (439)
42 PRK07121 hypothetical protein; 100.0 6.9E-45 1.5E-49 400.4 35.5 373 78-485 16-490 (492)
43 PRK12837 3-ketosteroid-delta-1 100.0 2E-43 4.2E-48 389.3 37.0 379 79-484 4-510 (513)
44 PRK12845 3-ketosteroid-delta-1 100.0 2E-43 4.4E-48 390.5 36.8 383 78-484 12-563 (564)
45 PRK08274 tricarballylate dehyd 100.0 3.6E-43 7.9E-48 385.1 35.2 378 81-487 3-462 (466)
46 PRK12844 3-ketosteroid-delta-1 100.0 7.1E-43 1.5E-47 387.4 33.9 384 79-486 3-550 (557)
47 PRK12835 3-ketosteroid-delta-1 100.0 7.9E-42 1.7E-46 380.2 35.1 388 78-488 7-572 (584)
48 PRK12834 putative FAD-binding 100.0 3.2E-41 6.8E-46 375.1 36.5 381 81-484 3-548 (549)
49 PRK12839 hypothetical protein; 100.0 9.8E-40 2.1E-44 362.2 35.2 388 78-484 4-566 (572)
50 TIGR02485 CobZ_N-term precorri 100.0 1.4E-39 3.1E-44 352.9 34.6 372 87-486 1-430 (432)
51 PRK07843 3-ketosteroid-delta-1 100.0 5.7E-39 1.2E-43 356.6 31.5 381 79-484 4-555 (557)
52 PRK12843 putative FAD-binding 100.0 1.7E-38 3.7E-43 354.3 34.9 391 77-487 11-573 (578)
53 PRK12842 putative succinate de 100.0 2.8E-38 6.2E-43 352.9 34.3 389 80-488 7-569 (574)
54 PRK06134 putative FAD-binding 100.0 4.9E-37 1.1E-41 342.8 35.1 389 78-486 8-571 (581)
55 COG2081 Predicted flavoprotein 100.0 3.3E-26 7.2E-31 231.1 29.5 346 81-486 2-407 (408)
56 PF03486 HI0933_like: HI0933-l 99.9 1.3E-25 2.8E-30 237.8 17.1 340 83-480 1-408 (409)
57 COG3573 Predicted oxidoreducta 99.9 1.8E-23 3.9E-28 203.2 23.0 259 80-353 3-316 (552)
58 PF02910 Succ_DH_flav_C: Fumar 99.9 7.1E-25 1.5E-29 195.0 9.8 99 524-622 1-100 (129)
59 TIGR00275 flavoprotein, HI0933 99.9 2.1E-21 4.5E-26 207.9 29.0 339 86-480 1-400 (400)
60 COG1249 Lpd Pyruvate/2-oxoglut 99.8 8.4E-19 1.8E-23 187.2 16.1 309 80-484 2-334 (454)
61 TIGR01372 soxA sarcosine oxida 99.7 1.5E-17 3.3E-22 196.3 17.1 106 13-118 85-200 (985)
62 TIGR03862 flavo_PP4765 unchara 99.7 2.9E-15 6.2E-20 156.3 27.0 323 106-486 3-375 (376)
63 TIGR01421 gluta_reduc_1 glutat 99.7 4.3E-16 9.4E-21 169.7 14.9 43 82-126 2-45 (450)
64 PTZ00058 glutathione reductase 99.7 4.6E-16 9.9E-21 172.0 15.0 47 79-127 45-92 (561)
65 TIGR01424 gluta_reduc_2 glutat 99.7 6.9E-16 1.5E-20 168.2 16.2 141 82-276 2-143 (446)
66 PLN02546 glutathione reductase 99.7 5.6E-16 1.2E-20 171.4 15.3 144 80-276 77-229 (558)
67 PLN02507 glutathione reductase 99.7 1.5E-15 3.3E-20 167.0 17.1 155 80-276 23-180 (499)
68 TIGR01423 trypano_reduc trypan 99.6 1.8E-15 3.9E-20 165.4 15.4 33 81-113 2-36 (486)
69 PRK06467 dihydrolipoamide dehy 99.6 2.1E-15 4.6E-20 165.2 14.9 45 81-126 3-48 (471)
70 TIGR01438 TGR thioredoxin and 99.6 3.4E-15 7.3E-20 163.7 15.9 155 82-277 2-157 (484)
71 PRK06115 dihydrolipoamide dehy 99.6 3.9E-15 8.4E-20 163.0 15.3 45 82-127 3-48 (466)
72 PLN02661 Putative thiazole syn 99.6 1.2E-14 2.6E-19 148.6 17.5 145 79-275 89-244 (357)
73 PRK06116 glutathione reductase 99.6 4.6E-15 1E-19 162.1 14.9 43 81-125 3-46 (450)
74 PRK06370 mercuric reductase; V 99.6 1.5E-14 3.2E-19 158.7 15.8 36 80-115 3-39 (463)
75 KOG0405 Pyridine nucleotide-di 99.6 2.4E-14 5.1E-19 140.9 14.4 286 80-453 18-327 (478)
76 COG0492 TrxB Thioredoxin reduc 99.6 1.2E-14 2.7E-19 148.0 12.9 115 81-278 2-118 (305)
77 PRK06327 dihydrolipoamide dehy 99.6 3.4E-14 7.5E-19 156.1 16.7 31 82-112 4-35 (475)
78 PRK14694 putative mercuric red 99.6 6.3E-14 1.4E-18 153.8 18.1 45 80-126 4-49 (468)
79 PRK06416 dihydrolipoamide dehy 99.6 2.4E-14 5.1E-19 157.2 14.7 34 81-114 3-37 (462)
80 PRK05976 dihydrolipoamide dehy 99.6 3.1E-14 6.8E-19 156.4 15.6 44 81-126 3-47 (472)
81 PRK05249 soluble pyridine nucl 99.6 3.5E-14 7.5E-19 155.9 15.9 40 80-119 3-43 (461)
82 PRK07818 dihydrolipoamide dehy 99.6 4.2E-14 9.1E-19 155.2 16.1 44 82-127 4-48 (466)
83 PRK04176 ribulose-1,5-biphosph 99.6 6.5E-14 1.4E-18 140.3 15.8 144 81-276 24-174 (257)
84 PRK08010 pyridine nucleotide-d 99.5 5E-14 1.1E-18 153.6 14.5 45 82-126 3-48 (441)
85 PRK07845 flavoprotein disulfid 99.5 9.7E-14 2.1E-18 152.1 16.2 148 84-277 3-153 (466)
86 TIGR03140 AhpF alkyl hydropero 99.5 3.5E-14 7.6E-19 157.3 11.5 114 80-276 210-324 (515)
87 PTZ00153 lipoamide dehydrogena 99.5 5.2E-14 1.1E-18 157.7 12.4 47 80-126 114-161 (659)
88 PRK13748 putative mercuric red 99.5 2.3E-13 5E-18 153.1 16.9 43 81-125 97-140 (561)
89 PRK06292 dihydrolipoamide dehy 99.5 2.2E-13 4.7E-18 149.5 15.7 34 81-114 2-36 (460)
90 TIGR01350 lipoamide_DH dihydro 99.5 4.1E-13 8.9E-18 147.4 17.4 42 82-125 1-43 (461)
91 PRK14727 putative mercuric red 99.5 1.3E-13 2.9E-18 151.4 13.4 44 81-125 15-59 (479)
92 TIGR02053 MerA mercuric reduct 99.5 1.2E-13 2.6E-18 151.6 12.5 43 83-127 1-44 (463)
93 COG1635 THI4 Ribulose 1,5-bisp 99.5 4.1E-13 8.9E-18 124.8 13.9 141 81-273 29-176 (262)
94 PF01946 Thi4: Thi4 family; PD 99.5 4.3E-13 9.3E-18 125.8 13.6 144 80-275 15-165 (230)
95 PRK06912 acoL dihydrolipoamide 99.5 3.4E-13 7.4E-18 147.6 14.7 42 84-127 2-44 (458)
96 TIGR00292 thiazole biosynthesi 99.5 7.4E-13 1.6E-17 132.2 15.8 144 81-275 20-170 (254)
97 TIGR00136 gidA glucose-inhibit 99.5 1.5E-11 3.3E-16 134.4 26.8 152 83-276 1-155 (617)
98 PTZ00052 thioredoxin reductase 99.5 2.9E-13 6.4E-18 149.1 13.7 32 82-113 5-37 (499)
99 PRK07251 pyridine nucleotide-d 99.5 2.9E-13 6.2E-18 147.5 13.3 46 82-127 3-49 (438)
100 PRK07846 mycothione reductase; 99.5 5.7E-13 1.2E-17 145.2 14.3 42 82-127 1-43 (451)
101 KOG4716 Thioredoxin reductase 99.5 1.7E-12 3.6E-17 127.5 15.8 83 79-180 16-99 (503)
102 KOG1335 Dihydrolipoamide dehyd 99.5 5.5E-13 1.2E-17 133.1 12.7 151 81-279 38-189 (506)
103 TIGR03143 AhpF_homolog putativ 99.5 3.3E-13 7.2E-18 150.6 12.4 72 409-489 240-311 (555)
104 PRK05192 tRNA uridine 5-carbox 99.4 3E-11 6.5E-16 132.4 26.8 153 81-276 3-158 (618)
105 PRK15317 alkyl hydroperoxide r 99.4 6.6E-13 1.4E-17 147.3 14.1 114 80-276 209-323 (517)
106 COG0644 FixC Dehydrogenases (f 99.4 2.6E-12 5.6E-17 138.0 17.6 149 81-276 2-153 (396)
107 TIGR03452 mycothione_red mycot 99.4 9.4E-13 2E-17 143.6 13.2 41 82-126 2-43 (452)
108 PRK05329 anaerobic glycerol-3- 99.4 3.4E-11 7.3E-16 128.5 23.8 60 208-275 259-318 (422)
109 PRK11101 glpA sn-glycerol-3-ph 99.4 3.8E-12 8.2E-17 141.8 15.0 188 81-276 5-212 (546)
110 TIGR01292 TRX_reduct thioredox 99.4 3.3E-12 7.1E-17 131.9 13.0 49 429-485 251-299 (300)
111 KOG0042 Glycerol-3-phosphate d 99.4 2.3E-13 4.9E-18 141.3 3.7 188 79-276 64-288 (680)
112 COG3634 AhpF Alkyl hydroperoxi 99.4 1.4E-13 3.1E-18 135.3 0.7 63 206-276 264-326 (520)
113 COG0578 GlpA Glycerol-3-phosph 99.3 3.8E-12 8.3E-17 136.5 11.4 185 81-277 11-227 (532)
114 PRK13512 coenzyme A disulfide 99.3 4.4E-12 9.6E-17 137.9 12.2 32 84-115 3-37 (438)
115 PRK10015 oxidoreductase; Provi 99.3 2.5E-11 5.4E-16 131.4 17.0 160 81-277 4-166 (429)
116 TIGR03329 Phn_aa_oxid putative 99.3 4.9E-11 1.1E-15 130.7 18.1 185 78-276 20-238 (460)
117 PRK10262 thioredoxin reductase 99.3 6.4E-12 1.4E-16 131.2 10.6 36 80-115 4-40 (321)
118 PLN02464 glycerol-3-phosphate 99.3 5.9E-11 1.3E-15 133.9 15.7 68 206-277 230-298 (627)
119 PRK12266 glpD glycerol-3-phosp 99.3 1.5E-10 3.3E-15 128.0 18.3 180 81-276 5-217 (508)
120 PF01266 DAO: FAD dependent ox 99.3 1.1E-10 2.5E-15 123.2 16.4 178 84-276 1-204 (358)
121 PRK12831 putative oxidoreducta 99.2 3.9E-11 8.4E-16 131.0 11.8 49 430-487 412-461 (464)
122 PRK09564 coenzyme A disulfide 99.2 6.7E-11 1.4E-15 129.3 11.5 33 84-116 2-37 (444)
123 PRK13369 glycerol-3-phosphate 99.2 5.7E-10 1.2E-14 123.5 16.6 186 80-276 4-216 (502)
124 PLN02697 lycopene epsilon cycl 99.2 4E-09 8.6E-14 115.9 22.9 143 80-276 106-249 (529)
125 COG2509 Uncharacterized FAD-de 99.2 3.2E-09 6.9E-14 109.6 20.4 60 207-276 172-231 (486)
126 PRK09754 phenylpropionate diox 99.2 8.5E-10 1.9E-14 118.6 17.0 54 430-484 254-308 (396)
127 TIGR01316 gltA glutamate synth 99.2 1.9E-10 4.1E-15 125.4 12.0 47 430-485 402-448 (449)
128 PF01134 GIDA: Glucose inhibit 99.1 6.2E-10 1.3E-14 116.0 14.6 150 84-276 1-153 (392)
129 PF00732 GMC_oxred_N: GMC oxid 99.1 6.8E-10 1.5E-14 114.5 14.7 62 212-275 196-258 (296)
130 PRK09853 putative selenate red 99.1 5.6E-10 1.2E-14 128.8 14.6 48 430-486 794-841 (1019)
131 PRK11749 dihydropyrimidine deh 99.1 4.6E-10 1E-14 122.9 13.1 50 430-488 403-453 (457)
132 TIGR02023 BchP-ChlP geranylger 99.1 7.4E-09 1.6E-13 111.1 22.1 31 83-113 1-32 (388)
133 PRK12409 D-amino acid dehydrog 99.1 2.7E-09 5.8E-14 115.4 18.8 45 83-127 2-48 (410)
134 TIGR01373 soxB sarcosine oxida 99.1 8.8E-10 1.9E-14 119.1 14.9 185 78-276 26-241 (407)
135 PF12831 FAD_oxidored: FAD dep 99.1 5.8E-11 1.3E-15 128.6 5.6 146 84-273 1-148 (428)
136 PRK10157 putative oxidoreducta 99.1 8.3E-10 1.8E-14 119.7 14.5 158 81-276 4-165 (428)
137 TIGR02028 ChlP geranylgeranyl 99.1 7.1E-09 1.5E-13 111.4 21.2 44 440-487 266-309 (398)
138 COG0579 Predicted dehydrogenas 99.1 1.8E-09 3.9E-14 113.9 15.8 184 81-276 2-212 (429)
139 TIGR01320 mal_quin_oxido malat 99.1 4.7E-09 1E-13 114.9 19.5 66 206-276 176-241 (483)
140 PRK06126 hypothetical protein; 99.1 3.7E-09 8E-14 118.6 19.2 65 208-277 126-190 (545)
141 PRK00711 D-amino acid dehydrog 99.1 3.2E-09 6.8E-14 115.1 18.0 60 206-276 199-258 (416)
142 PRK12810 gltD glutamate syntha 99.1 8.2E-10 1.8E-14 121.3 13.1 50 430-488 416-466 (471)
143 PF07992 Pyr_redox_2: Pyridine 99.1 6.6E-10 1.4E-14 107.5 10.8 31 84-114 1-32 (201)
144 PRK12769 putative oxidoreducta 99.1 1.5E-08 3.3E-13 115.7 23.6 39 81-119 326-365 (654)
145 PRK04965 NADH:flavorubredoxin 99.1 5.8E-09 1.3E-13 111.5 18.3 49 431-484 253-301 (377)
146 PRK12779 putative bifunctional 99.1 8.1E-10 1.8E-14 129.3 12.3 49 430-487 578-627 (944)
147 PRK07364 2-octaprenyl-6-methox 99.0 3.4E-09 7.4E-14 114.8 16.2 163 78-277 14-183 (415)
148 PRK14989 nitrite reductase sub 99.0 8.7E-10 1.9E-14 127.8 12.1 51 429-484 259-309 (847)
149 PRK11728 hydroxyglutarate oxid 99.0 4.1E-09 8.8E-14 113.3 16.3 176 82-276 2-205 (393)
150 PRK05257 malate:quinone oxidor 99.0 6.9E-09 1.5E-13 113.7 18.0 67 206-276 181-247 (494)
151 PLN02463 lycopene beta cyclase 99.0 3.4E-08 7.4E-13 106.9 23.1 36 79-114 25-61 (447)
152 TIGR03315 Se_ygfK putative sel 99.0 1.1E-09 2.5E-14 126.9 12.4 38 81-118 536-574 (1012)
153 PLN00093 geranylgeranyl diphos 99.0 3E-08 6.4E-13 107.8 22.6 37 78-114 35-72 (450)
154 PRK12775 putative trifunctiona 99.0 8.1E-10 1.8E-14 130.5 11.2 51 430-489 702-757 (1006)
155 TIGR03364 HpnW_proposed FAD de 99.0 3.2E-09 7E-14 113.0 14.9 46 83-128 1-47 (365)
156 TIGR01377 soxA_mon sarcosine o 99.0 2.5E-09 5.5E-14 114.4 14.1 181 83-276 1-201 (380)
157 KOG1298 Squalene monooxygenase 99.0 8.5E-10 1.8E-14 110.7 9.4 165 77-277 40-210 (509)
158 PRK12778 putative bifunctional 99.0 1.6E-09 3.5E-14 125.7 12.9 49 430-487 702-750 (752)
159 PRK01747 mnmC bifunctional tRN 99.0 1.5E-08 3.2E-13 116.1 19.3 49 82-130 260-310 (662)
160 PRK12770 putative glutamate sy 99.0 3.3E-09 7.2E-14 112.1 13.0 48 430-486 302-349 (352)
161 PRK12814 putative NADPH-depend 99.0 2.5E-09 5.3E-14 121.7 12.6 51 430-489 452-503 (652)
162 PRK13977 myosin-cross-reactive 99.0 3.5E-08 7.6E-13 107.5 20.5 79 207-286 225-306 (576)
163 TIGR02032 GG-red-SF geranylger 99.0 5.3E-09 1.2E-13 107.5 13.7 148 83-277 1-150 (295)
164 KOG0404 Thioredoxin reductase 99.0 6.7E-09 1.4E-13 96.9 12.6 119 80-276 6-125 (322)
165 PRK11259 solA N-methyltryptoph 99.0 5.7E-09 1.2E-13 111.5 14.1 180 81-276 2-205 (376)
166 PRK13339 malate:quinone oxidor 99.0 2.1E-08 4.6E-13 109.2 18.1 67 206-276 182-248 (497)
167 PRK06185 hypothetical protein; 99.0 1.1E-08 2.3E-13 110.7 15.4 63 208-276 108-170 (407)
168 KOG2415 Electron transfer flav 99.0 2.5E-09 5.5E-14 108.2 9.6 163 80-277 74-258 (621)
169 PF01494 FAD_binding_3: FAD bi 98.9 3.1E-09 6.7E-14 112.2 10.6 63 208-276 111-173 (356)
170 PLN02985 squalene monooxygenas 98.9 6.5E-09 1.4E-13 114.8 13.1 64 208-277 147-210 (514)
171 PRK13984 putative oxidoreducta 98.9 3.5E-09 7.7E-14 120.1 11.0 48 430-487 555-602 (604)
172 COG0665 DadA Glycine/D-amino a 98.9 1.5E-08 3.3E-13 108.6 15.2 182 81-277 3-214 (387)
173 PRK09126 hypothetical protein; 98.9 2.8E-08 6.1E-13 106.8 16.0 35 82-116 3-38 (392)
174 TIGR02374 nitri_red_nirB nitri 98.9 6.8E-09 1.5E-13 120.5 11.8 49 431-484 252-300 (785)
175 PRK06834 hypothetical protein; 98.9 3.1E-08 6.8E-13 109.0 16.4 59 208-277 100-158 (488)
176 TIGR01317 GOGAT_sm_gam glutama 98.9 1.5E-08 3.3E-13 111.4 13.8 50 430-488 430-480 (485)
177 TIGR03378 glycerol3P_GlpB glyc 98.9 1.1E-07 2.3E-12 100.6 19.4 61 207-275 262-323 (419)
178 PRK06183 mhpA 3-(3-hydroxyphen 98.9 3.6E-08 7.8E-13 110.4 16.9 159 80-277 8-176 (538)
179 PRK06184 hypothetical protein; 98.9 4.1E-08 8.9E-13 109.0 17.0 62 208-277 109-170 (502)
180 COG0445 GidA Flavin-dependent 98.9 3.7E-09 8.1E-14 111.3 7.7 151 82-276 4-159 (621)
181 COG0654 UbiH 2-polyprenyl-6-me 98.9 2.5E-08 5.5E-13 106.9 14.0 61 207-276 103-163 (387)
182 PRK07045 putative monooxygenas 98.9 4E-08 8.7E-13 105.5 15.2 61 208-276 106-166 (388)
183 TIGR01318 gltD_gamma_fam gluta 98.9 1.5E-08 3.3E-13 110.9 12.0 38 81-118 140-178 (467)
184 PTZ00318 NADH dehydrogenase-li 98.9 2.9E-08 6.2E-13 107.7 14.0 55 430-488 294-349 (424)
185 PRK12809 putative oxidoreducta 98.8 1.7E-07 3.7E-12 106.7 20.7 39 81-119 309-348 (639)
186 PRK08244 hypothetical protein; 98.8 5.2E-08 1.1E-12 108.0 16.0 60 209-276 101-160 (493)
187 PTZ00383 malate:quinone oxidor 98.8 3.8E-08 8.3E-13 107.6 14.5 60 206-276 209-274 (497)
188 PRK07190 hypothetical protein; 98.8 5.7E-08 1.2E-12 106.8 15.9 57 209-276 110-166 (487)
189 PRK05335 tRNA (uracil-5-)-meth 98.8 3.2E-08 6.9E-13 104.3 12.4 34 83-116 3-37 (436)
190 PRK08773 2-octaprenyl-3-methyl 98.8 4.2E-08 9.1E-13 105.5 13.8 58 208-276 113-170 (392)
191 PRK07608 ubiquinone biosynthes 98.8 7.1E-08 1.5E-12 103.6 15.4 35 82-116 5-40 (388)
192 PRK11445 putative oxidoreducta 98.8 1.1E-07 2.4E-12 100.5 16.1 33 83-115 2-34 (351)
193 PRK02106 choline dehydrogenase 98.8 1.3E-07 2.8E-12 106.3 17.5 58 214-276 206-263 (560)
194 PRK06617 2-octaprenyl-6-methox 98.8 6.3E-08 1.4E-12 103.4 14.3 60 207-277 103-162 (374)
195 PRK08849 2-octaprenyl-3-methyl 98.8 9.6E-08 2.1E-12 102.4 15.5 59 209-277 111-169 (384)
196 PRK08132 FAD-dependent oxidore 98.8 1.3E-07 2.8E-12 106.2 16.9 157 81-276 22-186 (547)
197 PRK08013 oxidoreductase; Provi 98.8 9.1E-08 2E-12 103.1 15.1 60 208-277 111-170 (400)
198 PRK08243 4-hydroxybenzoate 3-m 98.8 1E-07 2.2E-12 102.5 15.4 63 208-277 103-165 (392)
199 PRK07333 2-octaprenyl-6-methox 98.8 6.6E-08 1.4E-12 104.3 14.0 59 207-276 110-168 (403)
200 TIGR03169 Nterm_to_SelD pyridi 98.8 1.1E-07 2.5E-12 101.0 15.3 55 430-488 257-312 (364)
201 PRK08020 ubiF 2-octaprenyl-3-m 98.8 1.1E-07 2.3E-12 102.3 15.1 60 208-277 112-171 (391)
202 TIGR01988 Ubi-OHases Ubiquinon 98.8 8.1E-08 1.7E-12 102.9 13.9 59 208-276 106-164 (385)
203 PRK07494 2-octaprenyl-6-methox 98.7 1.7E-07 3.8E-12 100.5 15.1 37 79-115 4-41 (388)
204 PRK06847 hypothetical protein; 98.7 2.5E-07 5.5E-12 98.8 16.1 153 82-277 4-165 (375)
205 PRK05732 2-octaprenyl-6-methox 98.7 1.2E-07 2.6E-12 102.0 13.7 59 209-277 113-171 (395)
206 TIGR01810 betA choline dehydro 98.7 3.6E-07 7.8E-12 102.1 17.6 60 212-276 197-256 (532)
207 TIGR02730 carot_isom carotene 98.7 7.4E-07 1.6E-11 98.7 19.9 58 208-275 229-286 (493)
208 PRK07538 hypothetical protein; 98.7 2.3E-07 4.9E-12 100.5 15.3 65 207-276 101-166 (413)
209 PRK08163 salicylate hydroxylas 98.7 2.3E-07 4.9E-12 100.0 15.0 60 208-277 109-168 (396)
210 PRK05714 2-octaprenyl-3-methyl 98.7 1.3E-07 2.8E-12 102.1 13.0 58 208-276 112-169 (405)
211 TIGR02462 pyranose_ox pyranose 98.7 3.9E-07 8.5E-12 100.1 16.7 56 220-276 225-280 (544)
212 TIGR02360 pbenz_hydroxyl 4-hyd 98.7 3.2E-07 6.8E-12 98.5 15.7 63 208-277 103-165 (390)
213 PF13738 Pyr_redox_3: Pyridine 98.7 1E-07 2.2E-12 92.3 10.3 59 206-275 80-138 (203)
214 TIGR01984 UbiH 2-polyprenyl-6- 98.7 2.9E-07 6.2E-12 98.6 14.7 59 208-276 105-163 (382)
215 PRK08850 2-octaprenyl-6-methox 98.7 2.3E-07 4.9E-12 100.2 14.0 60 208-277 111-170 (405)
216 PRK12771 putative glutamate sy 98.7 9.9E-08 2.2E-12 107.3 10.9 52 429-489 394-446 (564)
217 PLN02785 Protein HOTHEAD 98.6 7.5E-07 1.6E-11 99.7 17.5 55 221-276 232-291 (587)
218 PRK09897 hypothetical protein; 98.6 1.3E-06 2.7E-11 96.3 17.2 36 83-118 2-40 (534)
219 PTZ00367 squalene epoxidase; P 98.6 7.2E-07 1.6E-11 99.2 15.5 34 81-114 32-66 (567)
220 KOG2853 Possible oxidoreductas 98.6 6.4E-07 1.4E-11 88.9 13.1 190 80-276 84-321 (509)
221 KOG2311 NAD/FAD-utilizing prot 98.6 1.3E-07 2.9E-12 97.5 8.6 155 80-276 26-187 (679)
222 TIGR01790 carotene-cycl lycope 98.6 5.9E-07 1.3E-11 96.4 14.1 34 84-117 1-35 (388)
223 PRK06996 hypothetical protein; 98.6 1E-06 2.2E-11 95.0 15.8 58 208-274 115-173 (398)
224 COG1233 Phytoene dehydrogenase 98.6 7.3E-07 1.6E-11 98.2 14.9 39 82-120 3-42 (487)
225 PRK06475 salicylate hydroxylas 98.6 7.8E-07 1.7E-11 95.9 14.8 63 208-277 107-169 (400)
226 PLN02172 flavin-containing mon 98.6 7.9E-07 1.7E-11 96.9 14.6 39 81-119 9-48 (461)
227 KOG2960 Protein involved in th 98.6 1.9E-07 4.2E-12 86.5 8.2 144 81-272 75-231 (328)
228 PRK07236 hypothetical protein; 98.6 8.9E-07 1.9E-11 95.0 14.7 35 81-115 5-40 (386)
229 KOG1336 Monodehydroascorbate/f 98.5 5.3E-07 1.2E-11 94.1 11.2 71 411-482 309-380 (478)
230 TIGR01989 COQ6 Ubiquinone bios 98.5 1.7E-06 3.7E-11 94.4 15.7 62 208-277 117-185 (437)
231 COG3075 GlpB Anaerobic glycero 98.5 1.4E-06 2.9E-11 86.5 12.7 60 207-274 257-316 (421)
232 PRK07588 hypothetical protein; 98.5 1.4E-06 3E-11 93.7 13.9 32 84-115 2-34 (391)
233 KOG2844 Dimethylglycine dehydr 98.5 7.7E-07 1.7E-11 95.6 11.4 179 81-276 38-244 (856)
234 TIGR02733 desat_CrtD C-3',4' d 98.5 1.2E-05 2.6E-10 89.2 20.8 62 207-273 231-292 (492)
235 PRK08294 phenol 2-monooxygenas 98.5 5E-06 1.1E-10 94.4 17.7 67 209-277 142-212 (634)
236 KOG2820 FAD-dependent oxidored 98.4 3.6E-06 7.9E-11 83.9 13.7 66 207-281 152-218 (399)
237 PRK07208 hypothetical protein; 98.4 1.6E-05 3.4E-10 87.9 20.3 62 208-274 218-279 (479)
238 PRK06753 hypothetical protein; 98.4 3.2E-06 6.9E-11 90.2 14.2 33 84-116 2-35 (373)
239 COG1252 Ndh NADH dehydrogenase 98.4 7.4E-06 1.6E-10 86.2 16.4 33 83-115 4-39 (405)
240 PRK05868 hypothetical protein; 98.4 3.9E-06 8.5E-11 89.4 14.6 33 84-116 3-36 (372)
241 TIGR02731 phytoene_desat phyto 98.4 8.7E-06 1.9E-10 89.3 17.6 62 208-273 213-274 (453)
242 PF06039 Mqo: Malate:quinone o 98.4 1.2E-05 2.5E-10 84.5 16.5 64 208-275 181-244 (488)
243 TIGR02734 crtI_fam phytoene de 98.4 2.2E-05 4.8E-10 87.3 19.8 56 208-273 219-274 (502)
244 COG3380 Predicted NAD/FAD-depe 98.3 1.7E-06 3.8E-11 83.6 8.9 35 84-118 3-38 (331)
245 COG2303 BetA Choline dehydroge 98.3 9E-06 1.9E-10 90.5 15.2 60 213-276 207-267 (542)
246 PLN02927 antheraxanthin epoxid 98.3 1.5E-05 3.3E-10 89.5 15.9 35 80-114 79-114 (668)
247 PLN02612 phytoene desaturase 98.3 8.4E-05 1.8E-09 83.5 21.5 57 208-273 308-364 (567)
248 TIGR03219 salicylate_mono sali 98.2 1.3E-05 2.8E-10 86.9 13.7 32 84-115 2-35 (414)
249 KOG1238 Glucose dehydrogenase/ 98.2 1.4E-05 3E-10 87.1 13.3 62 212-276 256-319 (623)
250 TIGR03377 glycerol3P_GlpA glyc 98.2 2.5E-05 5.4E-10 87.0 15.8 66 206-276 126-191 (516)
251 PTZ00363 rab-GDP dissociation 98.2 1.9E-05 4.1E-10 85.3 13.9 41 81-121 3-44 (443)
252 PF05834 Lycopene_cycl: Lycope 98.2 1.2E-05 2.5E-10 85.8 12.0 33 84-116 1-36 (374)
253 PF04820 Trp_halogenase: Trypt 98.2 1.3E-05 2.8E-10 87.4 12.0 63 207-279 153-215 (454)
254 COG2072 TrkA Predicted flavopr 98.2 2.1E-05 4.5E-10 85.4 13.5 39 80-118 6-46 (443)
255 PF13450 NAD_binding_8: NAD(P) 98.2 2.2E-06 4.9E-11 66.9 4.1 35 87-121 1-36 (68)
256 KOG2614 Kynurenine 3-monooxyge 98.1 1.7E-05 3.7E-10 81.8 10.7 37 83-119 3-40 (420)
257 TIGR02732 zeta_caro_desat caro 98.1 8.4E-05 1.8E-09 81.7 17.1 65 206-274 217-283 (474)
258 KOG2852 Possible oxidoreductas 98.1 1.1E-05 2.4E-10 78.7 8.6 170 82-279 10-212 (380)
259 PF13454 NAD_binding_9: FAD-NA 98.1 1.8E-05 4E-10 73.1 9.9 30 86-115 1-36 (156)
260 TIGR01789 lycopene_cycl lycope 98.1 2.7E-05 5.8E-10 82.8 11.4 39 84-122 1-42 (370)
261 COG1148 HdrA Heterodisulfide r 98.0 1.2E-05 2.6E-10 83.7 6.6 39 80-118 122-161 (622)
262 KOG1399 Flavin-containing mono 97.9 3.3E-05 7.3E-10 82.9 9.1 37 82-118 6-43 (448)
263 PRK08255 salicylyl-CoA 5-hydro 97.9 6.7E-05 1.5E-09 87.3 11.6 32 84-115 2-36 (765)
264 COG1251 NirB NAD(P)H-nitrite r 97.9 9.8E-05 2.1E-09 81.3 11.4 48 432-484 258-305 (793)
265 PF00743 FMO-like: Flavin-bind 97.9 0.00016 3.5E-09 80.1 13.3 35 84-118 3-38 (531)
266 PRK06567 putative bifunctional 97.9 0.00019 4.2E-09 82.8 14.1 34 81-114 382-416 (1028)
267 PLN02487 zeta-carotene desatur 97.8 0.00034 7.4E-09 78.0 15.7 73 199-274 286-359 (569)
268 PF00070 Pyr_redox: Pyridine n 97.8 0.00025 5.4E-09 57.4 10.7 32 85-116 2-34 (80)
269 COG1232 HemY Protoporphyrinoge 97.8 0.00062 1.3E-08 73.0 15.6 35 84-118 2-39 (444)
270 KOG4254 Phytoene desaturase [C 97.7 9.7E-05 2.1E-09 76.6 8.5 57 209-275 265-321 (561)
271 TIGR00031 UDP-GALP_mutase UDP- 97.7 3.5E-05 7.6E-10 81.3 5.0 39 83-121 2-41 (377)
272 TIGR03197 MnmC_Cterm tRNA U-34 97.7 0.00084 1.8E-08 71.9 15.1 61 206-278 133-193 (381)
273 PRK05976 dihydrolipoamide dehy 97.6 0.00057 1.2E-08 75.3 13.2 33 83-115 181-214 (472)
274 TIGR02352 thiamin_ThiO glycine 97.6 0.00051 1.1E-08 72.0 12.4 62 206-278 135-196 (337)
275 KOG0029 Amine oxidase [Seconda 97.6 6.3E-05 1.4E-09 82.3 5.3 41 80-120 13-54 (501)
276 PRK07233 hypothetical protein; 97.6 7.7E-05 1.7E-09 81.2 5.3 37 84-120 1-38 (434)
277 PLN02576 protoporphyrinogen ox 97.6 8E-05 1.7E-09 82.7 5.3 40 81-120 11-52 (496)
278 PF13434 K_oxygenase: L-lysine 97.5 0.0012 2.6E-08 69.2 13.2 34 82-115 2-37 (341)
279 PF13434 K_oxygenase: L-lysine 97.5 0.0016 3.4E-08 68.3 13.9 140 81-272 189-338 (341)
280 COG0562 Glf UDP-galactopyranos 97.5 0.00011 2.4E-09 73.2 4.8 40 83-122 2-42 (374)
281 PLN02268 probable polyamine ox 97.5 0.00011 2.4E-09 80.2 5.0 38 83-120 1-39 (435)
282 PF06100 Strep_67kDa_ant: Stre 97.5 0.0061 1.3E-07 65.2 17.5 74 208-284 207-285 (500)
283 TIGR00562 proto_IX_ox protopor 97.4 0.00013 2.8E-09 80.2 5.0 38 83-120 3-45 (462)
284 TIGR01350 lipoamide_DH dihydro 97.4 0.0014 3E-08 72.1 13.1 32 83-114 171-203 (461)
285 TIGR03140 AhpF alkyl hydropero 97.4 0.0017 3.6E-08 72.4 13.7 50 222-275 401-450 (515)
286 PRK15317 alkyl hydroperoxide r 97.4 0.0014 3.1E-08 73.1 13.1 49 222-274 400-448 (517)
287 PRK06416 dihydrolipoamide dehy 97.4 0.0016 3.5E-08 71.6 13.4 33 83-115 173-206 (462)
288 TIGR03385 CoA_CoA_reduc CoA-di 97.4 0.00033 7.1E-09 76.2 7.6 53 430-484 248-303 (427)
289 PRK06912 acoL dihydrolipoamide 97.4 0.0019 4E-08 71.0 13.6 32 83-114 171-203 (458)
290 PRK06115 dihydrolipoamide dehy 97.4 0.0021 4.6E-08 70.7 13.7 32 83-114 175-207 (466)
291 TIGR01316 gltA glutamate synth 97.4 0.0018 3.9E-08 70.8 12.8 32 83-114 273-305 (449)
292 COG4529 Uncharacterized protei 97.3 0.0036 7.9E-08 66.5 14.0 40 83-122 2-45 (474)
293 TIGR02053 MerA mercuric reduct 97.3 0.002 4.4E-08 70.8 12.9 32 83-114 167-199 (463)
294 PRK07818 dihydrolipoamide dehy 97.3 0.0029 6.2E-08 69.7 14.0 32 83-114 173-205 (466)
295 PRK11883 protoporphyrinogen ox 97.3 0.00021 4.5E-09 78.3 4.9 37 84-120 2-41 (451)
296 PRK06370 mercuric reductase; V 97.3 0.0022 4.8E-08 70.6 12.9 33 83-115 172-205 (463)
297 TIGR01292 TRX_reduct thioredox 97.3 0.0021 4.6E-08 66.0 12.1 48 222-274 190-237 (300)
298 PRK12831 putative oxidoreducta 97.3 0.0022 4.7E-08 70.4 12.6 32 83-114 282-314 (464)
299 COG3349 Uncharacterized conser 97.3 0.00025 5.5E-09 75.7 4.8 37 84-120 2-39 (485)
300 KOG2665 Predicted FAD-dependen 97.3 0.0007 1.5E-08 67.2 7.3 37 80-116 46-85 (453)
301 COG1231 Monoamine oxidase [Ami 97.3 0.00034 7.3E-09 73.5 5.2 43 80-122 5-48 (450)
302 PRK04965 NADH:flavorubredoxin 97.2 0.0031 6.8E-08 67.4 12.4 32 83-114 142-174 (377)
303 PRK06116 glutathione reductase 97.2 0.0039 8.5E-08 68.3 13.1 32 83-114 168-200 (450)
304 PRK06327 dihydrolipoamide dehy 97.2 0.0054 1.2E-07 67.7 13.8 32 83-114 184-216 (475)
305 PRK07251 pyridine nucleotide-d 97.2 0.0045 9.8E-08 67.6 13.1 32 84-115 159-191 (438)
306 PLN02852 ferredoxin-NADP+ redu 97.2 0.00054 1.2E-08 74.9 5.7 37 82-118 26-65 (491)
307 PRK12416 protoporphyrinogen ox 97.1 0.00042 9E-09 76.3 4.8 37 84-120 3-46 (463)
308 PRK10262 thioredoxin reductase 97.1 0.0051 1.1E-07 64.1 12.8 98 83-273 147-246 (321)
309 PLN02676 polyamine oxidase 97.1 0.00054 1.2E-08 75.6 5.3 40 81-120 25-66 (487)
310 PRK09754 phenylpropionate diox 97.1 0.0047 1E-07 66.5 12.4 33 83-115 145-178 (396)
311 TIGR00137 gid_trmFO tRNA:m(5)U 97.1 0.00056 1.2E-08 73.0 4.7 33 83-115 1-34 (433)
312 PRK05249 soluble pyridine nucl 97.0 0.0058 1.3E-07 67.2 12.7 32 83-114 176-208 (461)
313 KOG1346 Programmed cell death 97.0 0.00086 1.9E-08 68.8 5.4 55 428-485 463-519 (659)
314 TIGR01421 gluta_reduc_1 glutat 97.0 0.0073 1.6E-07 66.1 13.0 32 83-114 167-199 (450)
315 PLN02328 lysine-specific histo 97.0 0.00093 2E-08 76.8 5.6 39 81-119 237-276 (808)
316 COG1249 Lpd Pyruvate/2-oxoglut 97.0 0.0075 1.6E-07 65.3 12.1 98 83-275 174-272 (454)
317 PLN02529 lysine-specific histo 96.9 0.00096 2.1E-08 76.2 5.5 39 81-119 159-198 (738)
318 PLN02568 polyamine oxidase 96.9 0.00097 2.1E-08 74.2 5.2 38 82-119 5-48 (539)
319 PTZ00058 glutathione reductase 96.9 0.011 2.4E-07 66.2 13.3 32 83-114 238-270 (561)
320 PRK09564 coenzyme A disulfide 96.9 0.011 2.3E-07 64.7 13.0 32 83-114 150-182 (444)
321 TIGR01424 gluta_reduc_2 glutat 96.9 0.0099 2.1E-07 65.0 12.6 33 83-115 167-200 (446)
322 PRK14989 nitrite reductase sub 96.8 0.01 2.2E-07 69.7 12.7 31 84-114 147-178 (847)
323 COG0446 HcaD Uncharacterized N 96.8 0.0036 7.9E-08 67.4 8.6 54 430-484 253-309 (415)
324 PLN02507 glutathione reductase 96.8 0.012 2.6E-07 65.3 12.5 32 83-114 204-236 (499)
325 PRK14694 putative mercuric red 96.8 0.015 3.2E-07 64.2 13.2 32 83-114 179-211 (468)
326 TIGR01438 TGR thioredoxin and 96.8 0.013 2.8E-07 64.8 12.6 30 84-113 182-212 (484)
327 COG0446 HcaD Uncharacterized N 96.8 0.011 2.3E-07 63.8 11.9 36 82-117 136-172 (415)
328 PTZ00153 lipoamide dehydrogena 96.8 0.015 3.2E-07 66.2 13.3 33 83-115 313-346 (659)
329 TIGR02374 nitri_red_nirB nitri 96.8 0.0095 2.1E-07 69.7 11.9 32 83-114 141-173 (785)
330 TIGR03385 CoA_CoA_reduc CoA-di 96.7 0.015 3.2E-07 63.3 12.6 32 83-114 138-170 (427)
331 PRK14727 putative mercuric red 96.7 0.016 3.4E-07 64.1 12.9 31 83-113 189-220 (479)
332 PRK06467 dihydrolipoamide dehy 96.7 0.016 3.4E-07 63.9 12.9 33 83-115 175-208 (471)
333 PRK06292 dihydrolipoamide dehy 96.7 0.022 4.7E-07 62.6 13.8 32 83-114 170-202 (460)
334 TIGR01423 trypano_reduc trypan 96.7 0.015 3.2E-07 64.2 12.4 53 212-274 235-287 (486)
335 PRK12778 putative bifunctional 96.7 0.015 3.2E-07 68.1 13.0 32 83-114 571-604 (752)
336 PRK07845 flavoprotein disulfid 96.7 0.015 3.4E-07 63.9 12.3 32 83-114 178-210 (466)
337 PRK12810 gltD glutamate syntha 96.7 0.012 2.6E-07 64.9 11.4 54 217-275 338-400 (471)
338 TIGR01318 gltD_gamma_fam gluta 96.7 0.018 3.8E-07 63.4 12.6 32 83-114 283-316 (467)
339 PRK11749 dihydropyrimidine deh 96.7 0.018 3.8E-07 63.3 12.6 32 83-114 274-307 (457)
340 PRK08010 pyridine nucleotide-d 96.6 0.022 4.7E-07 62.3 13.0 31 84-114 160-191 (441)
341 PRK07846 mycothione reductase; 96.6 0.02 4.2E-07 62.8 12.2 32 83-114 167-199 (451)
342 KOG1276 Protoporphyrinogen oxi 96.6 0.0025 5.3E-08 66.2 4.6 40 81-120 10-52 (491)
343 TIGR03143 AhpF_homolog putativ 96.6 0.017 3.8E-07 64.9 11.9 32 83-114 144-176 (555)
344 KOG0685 Flavin-containing amin 96.6 0.0026 5.6E-08 67.0 4.7 37 82-118 21-59 (498)
345 PRK13748 putative mercuric red 96.6 0.024 5.2E-07 64.1 13.0 32 83-114 271-303 (561)
346 COG2907 Predicted NAD/FAD-bind 96.5 0.0026 5.7E-08 64.2 4.0 41 82-122 8-48 (447)
347 COG3634 AhpF Alkyl hydroperoxi 96.4 0.02 4.3E-07 57.9 9.8 51 213-267 394-444 (520)
348 PRK12770 putative glutamate sy 96.4 0.028 6.1E-07 59.4 11.8 32 83-114 173-206 (352)
349 PRK12779 putative bifunctional 96.4 0.028 6.2E-07 66.7 12.9 32 83-114 448-480 (944)
350 PLN02546 glutathione reductase 96.4 0.035 7.5E-07 62.2 12.7 32 83-114 253-285 (558)
351 PTZ00052 thioredoxin reductase 96.4 0.032 6.9E-07 61.9 12.3 30 84-113 184-214 (499)
352 PRK13512 coenzyme A disulfide 96.4 0.027 6E-07 61.4 11.7 32 83-114 149-181 (438)
353 PTZ00188 adrenodoxin reductase 96.3 0.0041 8.9E-08 67.2 4.8 39 82-120 39-79 (506)
354 TIGR03452 mycothione_red mycot 96.3 0.04 8.6E-07 60.4 12.6 32 83-114 170-202 (452)
355 PRK12775 putative trifunctiona 96.3 0.033 7.2E-07 66.7 12.6 51 222-275 622-686 (1006)
356 PLN02976 amine oxidase 96.3 0.0051 1.1E-07 73.6 5.5 41 80-120 691-732 (1713)
357 COG0493 GltD NADPH-dependent g 96.3 0.0054 1.2E-07 66.4 5.3 37 83-119 124-161 (457)
358 PLN03000 amine oxidase 96.2 0.0051 1.1E-07 70.9 5.2 40 81-120 183-223 (881)
359 KOG1335 Dihydrolipoamide dehyd 96.1 0.036 7.8E-07 56.9 9.7 102 83-275 212-314 (506)
360 COG1252 Ndh NADH dehydrogenase 96.1 0.041 8.9E-07 58.3 10.6 52 210-275 211-262 (405)
361 PTZ00318 NADH dehydrogenase-li 95.9 0.063 1.4E-06 58.3 11.7 48 213-275 233-280 (424)
362 KOG2495 NADH-dehydrogenase (ub 95.9 0.15 3.3E-06 53.3 13.4 34 81-114 54-88 (491)
363 KOG3855 Monooxygenase involved 95.8 0.067 1.5E-06 55.6 10.4 36 80-115 34-74 (481)
364 COG0492 TrxB Thioredoxin reduc 95.6 0.12 2.7E-06 53.1 11.8 93 83-274 144-237 (305)
365 KOG1336 Monodehydroascorbate/f 95.6 0.095 2.1E-06 55.6 10.8 100 82-275 213-313 (478)
366 PRK12814 putative NADPH-depend 95.3 0.18 3.9E-06 57.9 12.8 32 83-114 324-357 (652)
367 TIGR01372 soxA sarcosine oxida 95.2 0.17 3.6E-06 61.0 12.9 53 217-276 360-412 (985)
368 COG3486 IucD Lysine/ornithine 95.0 0.28 6.2E-06 51.2 11.8 60 209-272 276-337 (436)
369 PRK12771 putative glutamate sy 94.9 0.26 5.5E-06 55.7 12.3 33 82-114 267-301 (564)
370 KOG0399 Glutamate synthase [Am 94.9 0.025 5.3E-07 65.1 4.0 40 81-120 1784-1824(2142)
371 PF00996 GDI: GDP dissociation 94.8 0.035 7.6E-07 59.7 4.8 41 80-120 2-43 (438)
372 PRK13984 putative oxidoreducta 94.4 0.35 7.6E-06 55.1 12.2 50 222-275 475-538 (604)
373 TIGR03169 Nterm_to_SelD pyridi 94.0 0.46 9.9E-06 50.4 11.5 47 214-275 197-243 (364)
374 KOG1800 Ferredoxin/adrenodoxin 94.0 0.063 1.4E-06 55.2 4.3 38 83-120 21-61 (468)
375 TIGR03315 Se_ygfK putative sel 93.9 0.59 1.3E-05 55.6 12.8 33 82-114 666-701 (1012)
376 TIGR01317 GOGAT_sm_gam glutama 93.9 0.51 1.1E-05 52.2 11.7 32 83-114 284-317 (485)
377 COG3486 IucD Lysine/ornithine 93.8 1.2 2.6E-05 46.7 13.1 36 80-115 3-40 (436)
378 PLN02852 ferredoxin-NADP+ redu 93.6 0.061 1.3E-06 59.0 3.8 51 430-488 373-423 (491)
379 KOG0404 Thioredoxin reductase 93.4 0.54 1.2E-05 44.9 9.1 56 213-272 197-252 (322)
380 PRK09853 putative selenate red 93.3 0.87 1.9E-05 54.1 12.7 32 83-114 669-703 (1019)
381 COG1206 Gid NAD(FAD)-utilizing 92.6 0.11 2.3E-06 52.5 3.4 34 83-116 4-38 (439)
382 KOG2755 Oxidoreductase [Genera 92.1 0.11 2.3E-06 50.9 2.6 51 409-459 276-326 (334)
383 KOG3851 Sulfide:quinone oxidor 91.5 0.15 3.2E-06 51.3 3.0 35 80-114 37-74 (446)
384 PRK02705 murD UDP-N-acetylmura 89.6 0.32 6.9E-06 53.4 3.9 32 84-115 2-34 (459)
385 PRK01438 murD UDP-N-acetylmura 89.4 0.39 8.4E-06 53.1 4.4 31 84-114 18-49 (480)
386 COG1251 NirB NAD(P)H-nitrite r 89.3 1.4 3.1E-05 49.6 8.4 52 214-276 193-244 (793)
387 PF13738 Pyr_redox_3: Pyridine 89.1 0.37 8E-06 46.2 3.5 34 82-115 167-201 (203)
388 KOG4405 GDP dissociation inhib 89.1 0.36 7.8E-06 50.2 3.4 39 80-118 6-45 (547)
389 KOG2755 Oxidoreductase [Genera 89.1 0.26 5.7E-06 48.2 2.3 31 85-115 2-35 (334)
390 PF01210 NAD_Gly3P_dh_N: NAD-d 88.8 0.45 9.8E-06 43.8 3.7 30 85-114 2-32 (157)
391 PF13241 NAD_binding_7: Putati 88.7 0.36 7.9E-06 40.9 2.8 32 83-114 8-40 (103)
392 PF01134 GIDA: Glucose inhibit 88.6 0.63 1.4E-05 49.3 5.0 44 435-488 346-390 (392)
393 COG5044 MRS6 RAB proteins gera 88.2 0.74 1.6E-05 47.4 5.0 40 81-120 5-45 (434)
394 PF01593 Amino_oxidase: Flavin 88.1 0.41 8.9E-06 51.4 3.5 29 92-120 1-30 (450)
395 PF01488 Shikimate_DH: Shikima 88.1 0.69 1.5E-05 41.4 4.3 33 82-114 12-46 (135)
396 KOG2495 NADH-dehydrogenase (ub 87.7 3 6.5E-05 44.1 9.1 48 217-275 282-329 (491)
397 TIGR01470 cysG_Nterm siroheme 87.5 0.67 1.4E-05 44.8 4.1 31 83-113 10-41 (205)
398 PF02558 ApbA: Ketopantoate re 87.4 0.73 1.6E-05 41.9 4.2 30 85-114 1-31 (151)
399 PRK15116 sulfur acceptor prote 87.4 0.75 1.6E-05 46.2 4.5 39 81-119 29-69 (268)
400 PF02737 3HCDH_N: 3-hydroxyacy 86.3 0.84 1.8E-05 43.1 4.0 30 85-114 2-32 (180)
401 PF01262 AlaDh_PNT_C: Alanine 86.2 0.95 2.1E-05 42.2 4.3 33 82-114 20-53 (168)
402 TIGR02355 moeB molybdopterin s 85.9 1.1 2.4E-05 44.4 4.8 40 82-121 24-65 (240)
403 COG0569 TrkA K+ transport syst 85.8 0.91 2E-05 44.6 4.1 31 84-114 2-33 (225)
404 KOG1439 RAB proteins geranylge 85.5 0.4 8.7E-06 49.8 1.5 39 82-120 4-43 (440)
405 KOG4716 Thioredoxin reductase 85.4 1.8 3.9E-05 44.1 5.9 35 83-117 199-234 (503)
406 TIGR00292 thiazole biosynthesi 85.3 0.94 2E-05 45.4 4.0 47 438-486 207-253 (254)
407 TIGR00518 alaDH alanine dehydr 85.3 0.96 2.1E-05 48.0 4.3 33 82-114 167-200 (370)
408 PRK09424 pntA NAD(P) transhydr 85.1 0.87 1.9E-05 50.1 3.9 33 82-114 165-198 (509)
409 COG3075 GlpB Anaerobic glycero 84.8 0.38 8.3E-06 48.7 0.9 33 82-114 2-35 (421)
410 COG0686 Ald Alanine dehydrogen 84.8 0.75 1.6E-05 46.3 2.9 34 81-114 167-201 (371)
411 PRK14106 murD UDP-N-acetylmura 84.5 1 2.2E-05 49.2 4.3 32 83-114 6-38 (450)
412 TIGR02354 thiF_fam2 thiamine b 84.5 1.1 2.5E-05 43.0 4.0 38 82-119 21-60 (200)
413 PRK12475 thiamine/molybdopteri 84.3 1.3 2.9E-05 46.3 4.7 39 82-120 24-64 (338)
414 PRK06718 precorrin-2 dehydroge 83.4 1.4 3.1E-05 42.4 4.1 31 83-113 11-42 (202)
415 cd01487 E1_ThiF_like E1_ThiF_l 83.3 1.5 3.2E-05 41.2 4.2 35 85-119 2-38 (174)
416 PF00899 ThiF: ThiF family; I 83.3 1.3 2.8E-05 39.5 3.7 36 83-118 3-40 (135)
417 COG1635 THI4 Ribulose 1,5-bisp 83.2 1 2.3E-05 43.2 3.0 48 438-487 213-260 (262)
418 PRK04176 ribulose-1,5-biphosph 83.1 1.3 2.9E-05 44.4 4.0 47 439-487 209-255 (257)
419 PRK06719 precorrin-2 dehydroge 83.1 1.5 3.2E-05 40.4 4.0 30 83-112 14-44 (157)
420 PRK12549 shikimate 5-dehydroge 83.0 1.3 2.8E-05 45.2 4.0 32 83-114 128-161 (284)
421 PRK08328 hypothetical protein; 83.0 1.5 3.3E-05 43.2 4.2 38 82-119 27-66 (231)
422 PRK07688 thiamine/molybdopteri 82.8 1.5 3.2E-05 45.9 4.4 38 82-119 24-63 (339)
423 PRK08223 hypothetical protein; 82.5 1.8 3.9E-05 43.9 4.6 40 81-120 26-67 (287)
424 TIGR02356 adenyl_thiF thiazole 82.3 1.7 3.6E-05 41.9 4.2 39 81-119 20-60 (202)
425 KOG3923 D-aspartate oxidase [A 82.0 3.2 7E-05 41.7 6.0 47 82-129 3-57 (342)
426 PRK08644 thiamine biosynthesis 81.9 1.9 4.2E-05 41.8 4.5 39 81-119 27-67 (212)
427 cd01483 E1_enzyme_family Super 81.7 2 4.4E-05 38.6 4.4 36 85-120 2-39 (143)
428 PRK05690 molybdopterin biosynt 81.1 1.8 3.9E-05 43.1 4.0 39 82-120 32-72 (245)
429 TIGR03378 glycerol3P_GlpB glyc 81.0 1.3 2.8E-05 47.5 3.1 32 83-114 1-33 (419)
430 PRK12550 shikimate 5-dehydroge 80.9 1.9 4.2E-05 43.6 4.2 31 84-114 124-156 (272)
431 PRK12548 shikimate 5-dehydroge 80.6 2.2 4.8E-05 43.7 4.6 32 83-114 127-160 (289)
432 PRK14027 quinate/shikimate deh 80.6 1.9 4.1E-05 43.9 4.0 31 83-113 128-160 (283)
433 COG1063 Tdh Threonine dehydrog 80.5 1.7 3.6E-05 45.9 3.8 31 84-114 171-203 (350)
434 cd00401 AdoHcyase S-adenosyl-L 80.3 1.9 4.2E-05 46.2 4.2 32 83-114 203-235 (413)
435 PF03721 UDPG_MGDP_dh_N: UDP-g 80.2 1.5 3.3E-05 41.6 3.0 31 84-114 2-33 (185)
436 PF02254 TrkA_N: TrkA-N domain 80.1 2.1 4.6E-05 36.8 3.7 30 85-114 1-31 (116)
437 PRK06129 3-hydroxyacyl-CoA deh 80.0 1.9 4.1E-05 44.6 3.9 31 84-114 4-35 (308)
438 cd05311 NAD_bind_2_malic_enz N 79.8 2.5 5.3E-05 41.6 4.5 32 83-114 26-61 (226)
439 PLN02661 Putative thiazole syn 79.4 2.1 4.5E-05 44.8 3.9 48 438-487 281-328 (357)
440 TIGR01809 Shik-DH-AROM shikima 79.1 2.3 5E-05 43.3 4.2 32 82-113 125-158 (282)
441 cd01484 E1-2_like Ubiquitin ac 79.1 2.4 5.3E-05 41.8 4.1 36 85-120 2-39 (234)
442 cd00755 YgdL_like Family of ac 79.0 2.2 4.8E-05 41.9 3.9 38 82-119 11-50 (231)
443 COG1748 LYS9 Saccharopine dehy 78.9 2.4 5.1E-05 44.9 4.2 31 84-114 3-35 (389)
444 COG1179 Dinucleotide-utilizing 78.6 2.6 5.6E-05 41.1 4.0 39 82-120 30-70 (263)
445 PRK05708 2-dehydropantoate 2-r 78.6 2.7 5.9E-05 43.4 4.6 32 83-114 3-35 (305)
446 cd00757 ThiF_MoeB_HesA_family 78.5 2.4 5.3E-05 41.6 4.0 39 82-120 21-61 (228)
447 PRK08293 3-hydroxybutyryl-CoA 78.2 2.4 5.3E-05 43.2 4.1 31 84-114 5-36 (287)
448 cd01485 E1-1_like Ubiquitin ac 78.0 3.3 7.2E-05 39.7 4.7 38 82-119 19-58 (198)
449 PRK04148 hypothetical protein; 77.8 1.8 3.8E-05 38.5 2.5 31 83-114 18-49 (134)
450 TIGR00561 pntA NAD(P) transhyd 77.7 2.6 5.6E-05 46.4 4.2 33 82-114 164-197 (511)
451 cd01486 Apg7 Apg7 is an E1-lik 77.5 2.7 5.9E-05 42.8 4.0 37 84-120 1-39 (307)
452 TIGR01381 E1_like_apg7 E1-like 77.4 2.6 5.7E-05 47.3 4.2 39 82-120 338-378 (664)
453 PRK06249 2-dehydropantoate 2-r 77.0 3.6 7.7E-05 42.6 4.9 32 83-114 6-38 (313)
454 PRK02472 murD UDP-N-acetylmura 76.9 2.5 5.4E-05 46.2 4.0 31 84-114 7-38 (447)
455 PRK09260 3-hydroxybutyryl-CoA 76.8 2.8 6.2E-05 42.8 4.1 31 84-114 3-34 (288)
456 PRK05597 molybdopterin biosynt 76.7 3 6.6E-05 44.0 4.4 39 82-120 28-68 (355)
457 cd01080 NAD_bind_m-THF_DH_Cycl 76.4 3.5 7.5E-05 38.4 4.2 33 81-113 43-77 (168)
458 PRK12921 2-dehydropantoate 2-r 76.4 3.2 6.8E-05 42.7 4.4 29 84-112 2-31 (305)
459 PRK05600 thiamine biosynthesis 75.6 3.3 7.1E-05 44.0 4.3 40 81-120 40-81 (370)
460 PRK07878 molybdopterin biosynt 75.5 3.3 7.2E-05 44.3 4.3 40 81-120 41-82 (392)
461 cd05292 LDH_2 A subgroup of L- 75.3 3.4 7.4E-05 42.7 4.2 31 84-114 2-35 (308)
462 COG4716 Myosin-crossreactive a 75.0 1.8 3.9E-05 44.7 2.0 65 208-275 227-292 (587)
463 PRK06522 2-dehydropantoate 2-r 74.9 3.5 7.7E-05 42.3 4.3 30 84-113 2-32 (304)
464 PRK12749 quinate/shikimate deh 74.7 3.7 8.1E-05 41.9 4.3 32 83-114 125-158 (288)
465 PRK08762 molybdopterin biosynt 74.5 3.6 7.7E-05 43.9 4.2 40 81-120 134-175 (376)
466 PRK06153 hypothetical protein; 74.0 3 6.6E-05 43.9 3.4 41 82-122 176-218 (393)
467 cd01492 Aos1_SUMO Ubiquitin ac 73.5 4.6 0.0001 38.7 4.4 37 81-117 20-58 (197)
468 COG0169 AroE Shikimate 5-dehyd 73.4 4.2 9.1E-05 41.3 4.2 32 83-114 127-160 (283)
469 PRK05562 precorrin-2 dehydroge 73.4 4.2 9.1E-05 39.6 4.0 32 82-113 25-57 (223)
470 PRK07819 3-hydroxybutyryl-CoA 73.2 3.7 8E-05 41.9 3.8 31 84-114 7-38 (286)
471 cd01488 Uba3_RUB Ubiquitin act 73.1 4.2 9E-05 41.5 4.1 37 84-120 1-39 (291)
472 PRK08306 dipicolinate synthase 72.8 4.4 9.5E-05 41.6 4.3 33 82-114 152-185 (296)
473 PRK07530 3-hydroxybutyryl-CoA 72.5 4.6 9.9E-05 41.3 4.4 31 84-114 6-37 (292)
474 PRK06035 3-hydroxyacyl-CoA deh 72.3 4.1 8.8E-05 41.7 3.9 31 84-114 5-36 (291)
475 PRK07066 3-hydroxybutyryl-CoA 72.1 4.3 9.4E-05 42.1 4.0 31 84-114 9-40 (321)
476 TIGR00936 ahcY adenosylhomocys 71.9 4.5 9.7E-05 43.3 4.2 34 82-115 195-229 (406)
477 cd01489 Uba2_SUMO Ubiquitin ac 71.8 4.6 9.9E-05 41.6 4.1 36 84-119 1-38 (312)
478 PRK04308 murD UDP-N-acetylmura 71.8 4.4 9.6E-05 44.2 4.3 31 84-114 7-38 (445)
479 PLN02520 bifunctional 3-dehydr 71.8 4 8.8E-05 45.5 4.0 31 83-113 380-411 (529)
480 PRK00258 aroE shikimate 5-dehy 71.6 4.8 0.0001 40.9 4.2 31 83-113 124-156 (278)
481 PRK07411 hypothetical protein; 71.6 4.6 0.0001 43.2 4.2 40 81-120 37-78 (390)
482 COG1004 Ugd Predicted UDP-gluc 71.6 4.4 9.6E-05 42.5 3.9 31 84-114 2-33 (414)
483 PRK03369 murD UDP-N-acetylmura 70.4 4.5 9.8E-05 44.8 4.0 30 84-113 14-44 (488)
484 KOG0024 Sorbitol dehydrogenase 70.2 5.7 0.00012 40.5 4.2 32 82-113 170-203 (354)
485 PF00670 AdoHcyase_NAD: S-aden 70.0 4.9 0.00011 37.0 3.4 33 83-115 24-57 (162)
486 TIGR00507 aroE shikimate 5-deh 69.9 5.4 0.00012 40.3 4.1 31 83-113 118-149 (270)
487 cd01078 NAD_bind_H4MPT_DH NADP 69.6 5.6 0.00012 37.9 4.0 31 83-113 29-61 (194)
488 COG4529 Uncharacterized protei 69.0 33 0.00071 37.2 9.8 33 83-115 197-232 (474)
489 PLN02172 flavin-containing mon 69.0 4.4 9.6E-05 44.4 3.5 32 83-114 205-237 (461)
490 PRK07233 hypothetical protein; 68.9 15 0.00034 39.5 7.8 56 207-273 197-252 (434)
491 cd05291 HicDH_like L-2-hydroxy 68.9 6 0.00013 40.8 4.3 31 84-114 2-35 (306)
492 PF00056 Ldh_1_N: lactate/mala 68.6 7.3 0.00016 35.1 4.3 31 84-114 2-36 (141)
493 TIGR02853 spore_dpaA dipicolin 68.5 5.7 0.00012 40.5 4.0 33 82-114 151-184 (287)
494 TIGR03736 PRTRC_ThiF PRTRC sys 68.3 5.6 0.00012 39.4 3.7 40 81-120 10-61 (244)
495 PRK08229 2-dehydropantoate 2-r 68.2 6.2 0.00013 41.3 4.3 30 84-113 4-34 (341)
496 PRK05808 3-hydroxybutyryl-CoA 68.0 6 0.00013 40.3 4.0 31 84-114 5-36 (282)
497 PRK05476 S-adenosyl-L-homocyst 67.9 5.8 0.00013 42.7 4.0 34 82-115 212-246 (425)
498 cd01075 NAD_bind_Leu_Phe_Val_D 67.7 6.5 0.00014 37.8 4.0 31 83-113 29-60 (200)
499 KOG2018 Predicted dinucleotide 67.5 5.4 0.00012 40.2 3.3 32 84-115 76-109 (430)
500 COG2072 TrkA Predicted flavopr 67.5 5.4 0.00012 43.5 3.8 34 82-115 175-209 (443)
No 1
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=100.00 E-value=4.3e-109 Score=845.36 Aligned_cols=505 Identities=48% Similarity=0.721 Sum_probs=451.2
Q ss_pred cEEEECccHHHHHHHHHHHhcCCeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 006532 84 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTE 163 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~~~ 163 (641)
||+|||+|+|||++|+.|++.-+|+||.|+....++|.|+||||.+...++|+++.|+.|++.+|.++||++.++.++.+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~~ 88 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPSFRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVSE 88 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCCCcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHh
Confidence 99999999999999999998779999999999889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCC
Q 006532 164 GPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPD 243 (641)
Q Consensus 164 ~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~ 243 (641)
++.+++||.++|++|+++.+|.+.+..+|+|+.+|++|..+.+|+.++..|.++++++++|++++++.+.+|+++++.
T Consensus 89 ~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~-- 166 (518)
T COG0029 89 APEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGI-- 166 (518)
T ss_pred HHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCc--
Confidence 999999999999999999999999999999999999999999999999999999998899999999999999998542
Q ss_pred ceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecCCCCCCC
Q 006532 244 AVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIK 323 (641)
Q Consensus 244 ~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~ 323 (641)
.+.|+.+.+..+ +...|+|+.|||||||.+++|..++||..++|||++||+++|+.+.||||+|||||.+..++.
T Consensus 167 -~~~Gv~~~~~~~-~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~DlEFvQFHPT~l~~~~~--- 241 (518)
T COG0029 167 -GVAGVLVLNRNG-ELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADLEFVQFHPTALYIPQR--- 241 (518)
T ss_pred -eEeEEEEecCCC-eEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCccceeeccceecCCCC---
Confidence 455999986433 678999999999999999999999999999999999999999999999999999999876532
Q ss_pred CCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEeCCCCChhHHHhhChh
Q 006532 324 PKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFPN 403 (641)
Q Consensus 324 p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~lD~~~~~~~~~~~~~~~ 403 (641)
..+|++|++||+|++|+|.+|+|||..|+|.+||+|||+|+++|+.||++++.. ||||+++.+.+.+.++||+
T Consensus 242 ------~~~LiSEAVRGEGA~L~~~~GeRFm~~~~p~~ELAPRDVVARAI~~e~~~~g~~-V~LD~s~~~~~~~~~rFP~ 314 (518)
T COG0029 242 ------RAFLISEAVRGEGAILVNEDGERFMPDYHPRGELAPRDVVARAIDAEMKRGGAD-VFLDISHIPGDFFERRFPT 314 (518)
T ss_pred ------ccceeehhhhcCccEEECCCCCccccCCCCccccchHHHHHHHHHHHHHhcCCe-EEEeccCCCchhhhhhCcH
Confidence 268999999999999999999999999999999999999999999999997644 9999999998889999999
Q ss_pred HHHHHHHcCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHH
Q 006532 404 IAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSI 483 (641)
Q Consensus 404 ~~~~~~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa 483 (641)
+++.|.+.|+||.++||||.|++||+||||.||.++||+||||||+|||+|+|+||||||+||||.||+|||++|++.++
T Consensus 315 I~~~c~~~GiD~~r~~IPV~PaaHY~mGGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~ 394 (518)
T COG0029 315 IYAACLKAGIDPTREPIPVVPAAHYTMGGIAVDANGRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIA 394 (518)
T ss_pred HHHHHHHcCCCcccCccCccchhheecccEEECCCCcccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhhhcccccccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhh
Q 006532 484 DHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLF 563 (641)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~ 563 (641)
...............+. .. .+ ......-+++||++||+|+||+|+.++|++++.+|+.++++....
T Consensus 395 ~~~~~~~~~~~~~~~~~-~~----------~~-~~~~~~~~~~Lr~~m~~~~GI~R~~~~L~~~~~~l~~~~~~~~~~-- 460 (518)
T COG0029 395 GRLAPAPREAPTLPVRD-DY----------EE-NVLLAHDRHELRRLMWRYVGIVRTAKGLERAIRRLEPLQQENDEY-- 460 (518)
T ss_pred cccccCccCCCCCCccc-cc----------cc-ccccccCHHHHHHHHHhhcceEechHHHHHHHHHHHhhhhhhhhc--
Confidence 76432221000000000 00 00 011122357899999999999999999999999999998775542
Q ss_pred ccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeeecCCC
Q 006532 564 EHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIILPSL 625 (641)
Q Consensus 564 ~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~~~~ 625 (641)
.+.+.. -+|++++|++|+.|||+|+||||+|||.|||.+.+++...+++.++.
T Consensus 461 -----~~~~~~----~~nl~~vA~li~~~Al~R~ESRG~H~r~D~P~~~~~~~~~~~~~~~~ 513 (518)
T COG0029 461 -----ANFRVS----NRNLALVALLIARAALLRTESRGAHFRLDYPDTLPEAQRRILVTLND 513 (518)
T ss_pred -----cccccc----ccCHHHHHHHHHHHHHhccccccceecccCCCcCccccCceEEeccc
Confidence 011111 28999999999999999999999999999999999988888776543
No 2
>PLN02815 L-aspartate oxidase
Probab=100.00 E-value=6.4e-100 Score=841.32 Aligned_cols=560 Identities=81% Similarity=1.236 Sum_probs=480.0
Q ss_pred CccccccEEEECccHHHHHHHHHHHhcCCeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHH
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 157 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~ 157 (641)
..+.++||||||+|.|||+||+.|++.|+|+||||....+|+|.+++||+++...+.|+++.|++|+++.+.++++++++
T Consensus 25 ~~~~~~DVlVVG~G~AGl~AAl~Aae~G~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv 104 (594)
T PLN02815 25 ESTKYFDFLVIGSGIAGLRYALEVAEYGTVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETV 104 (594)
T ss_pred CcccccCEEEECccHHHHHHHHHHhhCCCEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHH
Confidence 44567999999999999999999999999999999999899999999999988888999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006532 158 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 158 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
+.+++++++.++||+++|++|++..+|.+....+++|+++|+++..+.+|..++..|.+.+++..||+|++++.+++|++
T Consensus 105 ~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~ 184 (594)
T PLN02815 105 RVVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDLLT 184 (594)
T ss_pred HHHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhheeee
Confidence 99999999999999999999998888888888899999999999888899999999999987756999999999999998
Q ss_pred cCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecC
Q 006532 238 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALAD 317 (641)
Q Consensus 238 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~ 317 (641)
+++|...+|+|+++.+..+|+.+.|.||+|||||||++++|+.+++++.+||||+.||+++||.+.||||+||||+.+..
T Consensus 185 ~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~~ttn~~~~tGDGi~mA~~aGA~l~~mefvQfhPt~~~~ 264 (594)
T PLN02815 185 SQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGIAMAHRAQAVVSNMEFVQFHPTALAD 264 (594)
T ss_pred ecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceeeCCCCCCCCCcccHHHHHHHHcCCcEecCceeEEeeeeecC
Confidence 64431113999999887788888999999999999999999999999999999999999999999999999999998875
Q ss_pred CCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEeCCCCChhHH
Q 006532 318 EGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKI 397 (641)
Q Consensus 318 ~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~lD~~~~~~~~~ 397 (641)
.+.+..|.......+++++.++++|++++|.+|+|||++|++..++.|||+++++|..++.+++..++|+|.++.+.+.+
T Consensus 265 ~~~~~~~~~~~~~~~l~~ea~rg~G~ilvN~~GeRF~~~y~~~~ela~rd~va~ai~~e~~~~~~~~v~lD~~~~~~~~~ 344 (594)
T PLN02815 265 EGLPIKPAKARENAFLITEAVRGDGGILYNLAGERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPREEI 344 (594)
T ss_pred CCccccccccccccceeehhhccCCcEEECCCCCCCccccCcccccCChHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHH
Confidence 44322232222235788999999999999999999999999988999999999999999977655689999999998888
Q ss_pred HhhChhHHHHHHHcCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHH
Q 006532 398 LSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARR 477 (641)
Q Consensus 398 ~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~ 477 (641)
.+++|++.+.+.+.|+|+.++|++|.|.+||+||||.||.++||+|||||||||++|+|+||+|||+||||++|+|||++
T Consensus 345 ~~~~p~i~~~~~~~GiD~~k~pi~v~P~~hyt~GGi~vD~~~~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~ 424 (594)
T PLN02815 345 LSHFPNIAAECLKRGLDITKQPIPVVPAAHYMCGGVRTGLQGETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARR 424 (594)
T ss_pred HHHCHHHHHHHHHhCcCCCCCceeeechhcEeCCCeeECCCCceecCCEEecccccccCCCCCCcchhhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred HHHHHHHhhhcccccccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHH
Q 006532 478 AVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAE 557 (641)
Q Consensus 478 Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~ 557 (641)
||+.+++++.....+............+..............+.+++.+||++||+|+||+|++++|+++|++|++|+++
T Consensus 425 Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~ 504 (594)
T PLN02815 425 AVQPSIDHMARALRDVSAAAAWARPVAPTALADSVMDEILEWTAVVRKELQRIMWNYVGIVRSTERLETAERKLEELEAE 504 (594)
T ss_pred HHHHHHHHhhcccccccccccccccccccchhhhhhhhhccchHHHHHHHHHHHHhcCCEEEcHHHHHHHHHHHHHHHHH
Confidence 99999887643211110000000000000000000001111356788999999999999999999999999999999988
Q ss_pred HHHhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeeecC-CCccccccccccc
Q 006532 558 WETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIILP-SLVNCTWSSRQLH 636 (641)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~~-~~~~~~~~~~~~~ 636 (641)
+........++.+.++++++|++||+++|+++++|||+|+||||+|||+|||++|++|.+++++++ -+---+|+++.||
T Consensus 505 ~~~~~~~~~~~~~~~~~~~~el~~~l~~a~~i~~aal~R~ESRG~H~R~D~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (594)
T PLN02815 505 WEAILFRHGWKPTMVGLEACEMRNLFCVAKLVVSSALARKESRGLHYTTDYPELVESERKPTVIFPSVPTAGTWSSRSLH 584 (594)
T ss_pred HHHhhcccccccchhHHHHHHHHhHHHHHHHHHHHHHhCCCCcceeecCCCCccChhHhcCEEEeeccCcccccCccccc
Confidence 776443334444557789999999999999999999999999999999999999999777777765 4445799999999
Q ss_pred c
Q 006532 637 K 637 (641)
Q Consensus 637 ~ 637 (641)
.
T Consensus 585 ~ 585 (594)
T PLN02815 585 R 585 (594)
T ss_pred c
Confidence 6
No 3
>PRK07395 L-aspartate oxidase; Provisional
Probab=100.00 E-value=4.8e-94 Score=792.51 Aligned_cols=529 Identities=40% Similarity=0.630 Sum_probs=449.8
Q ss_pred CccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHH
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDET 156 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~ 156 (641)
..+.++||||||+|.|||+||+.|++ | +|+||||....+|+|.+++||+++...+.|+++.|+.|+++.+.+++|+++
T Consensus 5 ~~~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~l 83 (553)
T PRK07395 5 ILPSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEA 83 (553)
T ss_pred cccccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHH
Confidence 45668999999999999999999975 8 999999999988999999999998888899999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006532 157 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 236 (641)
Q Consensus 157 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~ 236 (641)
++.+++++++.++||+++|++|++. ++.+....+++|+.+|.++..+.+|..++..|.+.+.++.||+|++++.+++|+
T Consensus 84 v~~~~~~s~~~i~wL~~~Gv~f~~~-~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li 162 (553)
T PRK07395 84 VRFLVEQAPEAIASLVEMGVAFDRH-GQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLW 162 (553)
T ss_pred HHHHHHHHHHHHHHHHhcCCeeecC-CCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhhe
Confidence 9999999999999999999999875 455556677899999999988889999999999988765699999999999999
Q ss_pred ecC-CCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceee
Q 006532 237 TTL-DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTAL 315 (641)
Q Consensus 237 ~~~-~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~ 315 (641)
+++ +| +|+||++.+ +|+...|+||.|||||||++++|..+++++.++|||+.||+++||.+.+|||+||||+.+
T Consensus 163 ~~~~~g---~v~Gv~~~~--~g~~~~i~AkaVILATGG~~~~~~~~tn~~~~tGdGi~mA~~aGA~l~~me~~q~hpt~~ 237 (553)
T PRK07395 163 LEPETG---RCQGISLLY--QGQITWLRAGAVILATGGGGQVFAQTTNPAVSTGDGVALAWRAGAQLRDLEFFQFHPTAL 237 (553)
T ss_pred ecCCCC---EEEEEEEEE--CCeEEEEEcCEEEEcCCCCccccCCccCccchhhHHHHHHHHcCCCccCCcceeEEeeee
Confidence 864 36 899998864 677778999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCC----CeEEEeCCC
Q 006532 316 ADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNE----KYVLLDISH 391 (641)
Q Consensus 316 ~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~----~~v~lD~~~ 391 (641)
..++. ..+++++.++++|+++||.+|+|||.+|+|..|+.+||+++++|++++.+++. ..||+|+++
T Consensus 238 ~~~~~---------~~~l~~e~~rg~g~ilvn~~G~RF~~~y~~~~El~~rd~v~~ai~~e~~~~~~~~~~~~v~ld~~~ 308 (553)
T PRK07395 238 TKPGA---------PRFLISEAVRGEGAHLVDAQGRRFAFDYHPAGELAPRDVVSRAIFSHLQKTATDPATAHVWLDLRP 308 (553)
T ss_pred cCCCC---------CceeeehhccCCcEEEECCCCCCCccccCcccccccHHHHHHHHHHHHHhcCCCCCCceEEEeccc
Confidence 54321 14678899999999999999999999999989999999999999999977542 379999999
Q ss_pred CChhHHHhhChhHHHHHHHcCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHH
Q 006532 392 KPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEA 471 (641)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a 471 (641)
.+.+.+.++||++.+++.+.|+|+.++|++|.|.+||+||||+||.++||+||||||||||+|+|+||+|||+||||+++
T Consensus 309 ~~~~~~~~~~p~i~~~~~~~giD~~~~~i~v~P~~h~~~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanRL~gnsl~e~ 388 (553)
T PRK07395 309 IPAERIRRRFPNIIRVCQKWGIDVFQEPIPVAPAAHYWMGGVVTDLNNQTSIPGLYAVGETASTGVHGANRLASNSLLEC 388 (553)
T ss_pred cchHHHHHhhHHHHHHHHHcCCCcCCCEeEEecceeecCCCeeECCCCcccCCCEEECccccccCCCcccchHHHHHHHH
Confidence 99888899999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCccccCHHHHHHHHHHH
Q 006532 472 LVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRI 551 (641)
Q Consensus 472 ~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l 551 (641)
+|||++||+.+++.......... ..... +. ..........+.+++++||++||+++||+|++++|++++++|
T Consensus 389 lvfG~~a~~~~~~~~~~~~~~~~-~~~~~----~~---~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l 460 (553)
T PRK07395 389 LVFAAQLAQLELPIEPPASPDLP-PISFI----ID---ASQWKNEQEQIQRIRQELPELVWQSAGICREADTLERAIAQV 460 (553)
T ss_pred HHHHHHHHHHHHhhcccCCCccc-chhhH----HH---HhhhhccCCCHHHHHHHHHHHHHhcccEEEcHHHHHHHHHHH
Confidence 99999999988754211100000 00000 00 000001112367888999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccc--------------ccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCC
Q 006532 552 DELEAEWETYLFEHGWEQ--------------TFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRL 617 (641)
Q Consensus 552 ~~l~~~~~~~~~~~~~~~--------------~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~ 617 (641)
++|++++.++........ +.++.+++|++||+++|+++++|||.|+||||+|||+|||++|++|.+
T Consensus 461 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~i~~~al~R~ESRG~H~R~D~p~~~~~~~~ 540 (553)
T PRK07395 461 EQWQQQLAALPLSQFLANLPPGQTVSFNGPDAEQQLRLWAETRNLLDIAYLILKSALFRTESRGGHYRLDYPQTDPAWQV 540 (553)
T ss_pred HHHHHHHhhccccccccccccccccccccccchhhHHHHHHHHhHHHHHHHHHHHHHhCCCCccceecCCCCccChhhhc
Confidence 999887765322110000 012566789999999999999999999999999999999999886555
Q ss_pred CeeecCCCccccccccc
Q 006532 618 PTIILPSLVNCTWSSRQ 634 (641)
Q Consensus 618 ~~~~~~~~~~~~~~~~~ 634 (641)
+++++ +++|...|
T Consensus 541 ~~~~~----~~~~~~~~ 553 (553)
T PRK07395 541 HTLVQ----GERWWQSP 553 (553)
T ss_pred eEEEE----cCEEecCC
Confidence 55444 66776544
No 4
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=100.00 E-value=5.9e-94 Score=796.10 Aligned_cols=521 Identities=33% Similarity=0.496 Sum_probs=455.7
Q ss_pred ccccEEEECccHHHHHHHHHHHhc--C-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 157 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~--G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~ 157 (641)
.++||||||||+|||+||+.|++. | +|+||||....+|++.+++||+++..++.|+++.|+.|+++.+.+++|++++
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv 81 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVV 81 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHH
Confidence 468999999999999999999987 6 9999999999899999999999888888999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006532 158 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 158 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
+.+++++++.++||+++|++|+++++|.+....+++|+++|+++..+.+|..++..|.+.+.+..+|++++++.+++|++
T Consensus 82 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~ 161 (580)
T TIGR01176 82 EYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLV 161 (580)
T ss_pred HHHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEe
Confidence 99999999999999999999999989988888889999999999988899999999999887656899999999999998
Q ss_pred cCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecC
Q 006532 238 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALAD 317 (641)
Q Consensus 238 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~ 317 (641)
+ ++ +|+||++.+..+|+...|+|+.|||||||++++|+.++++..+||||+.||+++||.+.||||+||||+.+..
T Consensus 162 ~-~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~me~~q~hPt~~~~ 237 (580)
T TIGR01176 162 D-DG---RVCGLVAIEMAEGRLVTILADAVVLATGGAGRVYPFNTNGGIVTGDGMAMAFRHGVPLRDMEFVQYHPTGLPG 237 (580)
T ss_pred e-CC---EEEEEEEEEcCCCcEEEEecCEEEEcCCCCcccccCCCCCCCcCcHHHHHHHHcCCCccCCcceEEEccccCC
Confidence 6 56 8999999887788888999999999999999999999999999999999999999999999999999987642
Q ss_pred CCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccc---------cc---cccCchhHHHHHHHHHHHhcC----
Q 006532 318 EGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD---------ER---AELAPRDVVARSIDDQLKKRN---- 381 (641)
Q Consensus 318 ~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~---------~~---~~~~~r~~~~~~i~~~~~~~~---- 381 (641)
. .+++++.++++|++++|.+|+|||++|+ |. .++.|||+++++|+.++.+++
T Consensus 238 ~------------~~l~~e~~rg~g~~lvn~~G~RF~~~y~~~~~~~~~~p~~~~~~l~~rd~v~~ai~~e~~~g~~~~~ 305 (580)
T TIGR01176 238 T------------GILMTEGCRGEGGILVNKDGYRYLQDYGMGPETPVGEPKNKYMELGPRDKVSQAFWHEHNKGNTIDT 305 (580)
T ss_pred C------------ceEEeecccCCceEEECCCCCCcccccccccccccccccchhhhcchhHHHHHHHHHHHHhcCCCCC
Confidence 1 4678899999999999999999999985 32 588999999999999998764
Q ss_pred --CCeEEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCC
Q 006532 382 --EKYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLH 458 (641)
Q Consensus 382 --~~~v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~ 458 (641)
+..||+|+++.+.+.+.+++|.+.+++.+ .|+|+.+++|+|.|.+||++|||+||.+++|+|||||||||++|+|+|
T Consensus 306 ~~g~~v~ld~~~~~~~~~~~~~~~~~~~~~~~~gid~~~~~i~v~p~~h~~~GGi~~d~~~~t~i~GLyAaGe~a~~G~h 385 (580)
T TIGR01176 306 PYGDVVYLDLRHLGEDLLDERLPFICELAKAYVHVDPVKEPIPVRPTVHYTMGGIETDINCETRIKGLFAVGECASVGLH 385 (580)
T ss_pred CCCCEEEEEcCCCCHHHHHHHhhHHHHHHHHHcCCCCCCCeEEEehHHhccCCCeeECcCcccccCCeEeeecccccCcC
Confidence 24599999999988899999999999988 599999999999999999999999999999999999999999888999
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCccccccchh-----hhhchHHHHHHHHHHHHh
Q 006532 459 GANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHN-----ILRRTKEVRKELQSIMWR 533 (641)
Q Consensus 459 Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~m~~ 533 (641)
|+|||+||||++|+|||++||++|++|+.......... .... ... ...++.. ....+.+++++||++||+
T Consensus 386 Ganrl~g~sl~~~~v~G~~ag~~aa~~~~~~~~~~~~~--~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 460 (580)
T TIGR01176 386 GANRLGSNSLAELVVFGRRAGEAAAERAARHQKSNESA--IRAQ-ART--VELRLERLLSQHGGENWADIRAEMGATMES 460 (580)
T ss_pred CCccccchhHHHHHHHHHHHHHHHHHhhccccccCccc--hhhh-HHH--HHHHHHHHhhccCcccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999874421100000 0000 000 0000000 112467889999999999
Q ss_pred cCccccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCC--CC
Q 006532 534 YVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDF--PH 610 (641)
Q Consensus 534 ~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~--P~ 610 (641)
|+||+|++++|+++|.+|++|++++..+.... ....++++++++|++|||++|+++++|||+|+||||+|||.|| |+
T Consensus 461 ~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~~~P~ 540 (580)
T TIGR01176 461 GCGIYRDGPLMQKTIDKLAELQERFKRAGIDDHSRVFNTDLLYLIELGGGLDVAEAMVHSALRRKESRGAHQRLDEGCTE 540 (580)
T ss_pred cccEEECHHHHHHHHHHHHHHHHHHHHhccCccccccchhHHHHHHHHhHHHHHHHHHHHHHhcccccccccccccCCcc
Confidence 99999999999999999999998887653222 2223578899999999999999999999999999999999999 99
Q ss_pred CccCCCCCeeec
Q 006532 611 VEENKRLPTIIL 622 (641)
Q Consensus 611 ~d~~~~~~~~~~ 622 (641)
++|++|.++++.
T Consensus 541 ~~d~~~~~~~~~ 552 (580)
T TIGR01176 541 RDDVHFLKHTLA 552 (580)
T ss_pred cCchhhcceEEE
Confidence 988777777653
No 5
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=100.00 E-value=1.2e-93 Score=798.15 Aligned_cols=537 Identities=35% Similarity=0.518 Sum_probs=456.3
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccC--CCCCHHHHHHHHHHhccCCCCHH
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDDE 155 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~--~~d~~~~~~~d~~~~g~~~~~~~ 155 (641)
.+.++||||||||+|||+||+.|++.| +|+||||....+|+|.+++||+++... +.|+++.|++|+++.+.+++|++
T Consensus 47 ~~~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~ 126 (635)
T PLN00128 47 VDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQD 126 (635)
T ss_pred eeeecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHH
Confidence 345799999999999999999999999 999999999889999999999987765 57899999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCcc--------ccceeeccCCcHHHHHHHHHHHHHcCCCcEEE
Q 006532 156 TVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS--------HHRIVHAADMTGREIERALLEAVVSDPNISVF 227 (641)
Q Consensus 156 ~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~--------~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~ 227 (641)
+++.+++++++.++||+++|++|+++.+|.+....+++|+ .+|+++..+.+|..++..|.+.+.+ .||+|+
T Consensus 127 lv~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~-~gv~i~ 205 (635)
T PLN00128 127 AIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMK-HNTQFF 205 (635)
T ss_pred HHHHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHh-CCCEEE
Confidence 9999999999999999999999999888887777778876 4588888888999999999999887 599999
Q ss_pred cceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeecccc
Q 006532 228 EHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEF 307 (641)
Q Consensus 228 ~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~ 307 (641)
+++.+++|+.++++ +|.||++.+..+|+...|.||+|||||||++++|..++++..+||||++||+++||.+.||||
T Consensus 206 ~~~~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~~tt~~~~~tGDG~~mA~~aGA~l~~mef 282 (635)
T PLN00128 206 VEYFALDLIMDSDG---ACQGVIALNMEDGTLHRFRAHSTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEF 282 (635)
T ss_pred EeeEEEEEEEcCCC---EEEEEEEEEcCCCeEEEEEcCeEEECCCCCccccccccCCCCCCCHHHHHHHHcCCCCcCCcc
Confidence 99999999986456 899999988778988899999999999999999999999999999999999999999999999
Q ss_pred ccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC----
Q 006532 308 VQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE---- 382 (641)
Q Consensus 308 ~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~~~~r~~~~~~i~~~~~~~~~---- 382 (641)
+||||+.+... .+++++.++++|++++|.+|+|||++|++. .++.+||+++++|..++.++++
T Consensus 283 vqfhPt~~~~~------------~~l~~ea~rg~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~ 350 (635)
T PLN00128 283 VQFHPTGIYGA------------GCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPE 350 (635)
T ss_pred eEEecccccCC------------CeEEeeeccCCCcEEECCCCCCcccccCcccccccchhHHHHHHHHHHHhcCCCCCC
Confidence 99999877531 467888999999999999999999999876 5899999999999999876532
Q ss_pred -CeEEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCC----------cccCCeeecc
Q 006532 383 -KYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGE----------TNVRGLYVAG 450 (641)
Q Consensus 383 -~~v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~----------T~ipGLyAaG 450 (641)
..+|+|+++++.+.+.+++|.+.+.+.. .|+|+.++|++|.|.+||+||||.||.++| |+||||||||
T Consensus 351 ~~~v~ld~~~l~~e~l~~~~~~~~~~~~~~~G~D~~~~pi~v~P~~hyt~GGi~vd~~g~vl~~~g~~~~t~IpGLYAaG 430 (635)
T PLN00128 351 KDHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTIKGDDPDAVVPGLMAAG 430 (635)
T ss_pred CCEEEEEcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCceEeeccceEecCCcccCCCCeEecccCcccCCccCceEeee
Confidence 3599999999999999999999888876 699999999999999999999999999888 5899999999
Q ss_pred cccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCcccc-ccch--hhhhchHHHHHHH
Q 006532 451 EVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGC-NVMH--NILRRTKEVRKEL 527 (641)
Q Consensus 451 e~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~l 527 (641)
||+|+|+||+|||+||+|++|+|||++||++|+++++..... .... ... .+..... ..+. .....+.+++++|
T Consensus 431 E~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~~~~~~~~-~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L 506 (635)
T PLN00128 431 EAACASVHGANRLGANSLLDIVVFGRACANRVAEIAKPGEKQ-KPLP--KDA-GEKTIAWLDKLRNANGSLPTSKIRLNM 506 (635)
T ss_pred ccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhhcccccc-cccc--hhh-HHHHHHHHHHhhcccCCCChHHHHHHH
Confidence 999889999999999999999999999999999876432100 0000 000 0000000 0000 0113477889999
Q ss_pred HHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCccccccc
Q 006532 528 QSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMV 606 (641)
Q Consensus 528 ~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~ 606 (641)
|++||+++||+|++++|++++++|++|++++..+...+ ....++++++++|++||+++|+++++|||+|+||||+|||+
T Consensus 507 q~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~n~l~~a~~~~~aal~R~ESRG~H~R~ 586 (635)
T PLN00128 507 QRVMQNNAAVFRTQETLEEGCKLIDEAWDSFHDVKVTDRSLIWNSDLIETLELENLLINACITMHSAEARKESRGAHARE 586 (635)
T ss_pred HHHHhCceeEEECHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccC
Confidence 99999999999999999999999999998876542211 11235678899999999999999999999999999999999
Q ss_pred CCCCCccCCCCCeeec-CCCcccccccccc
Q 006532 607 DFPHVEENKRLPTIIL-PSLVNCTWSSRQL 635 (641)
Q Consensus 607 D~P~~d~~~~~~~~~~-~~~~~~~~~~~~~ 635 (641)
|||++||++|+++++. .++.+....+.|+
T Consensus 587 D~P~~~d~~w~~~~~~~~~~~~~~~~~~~~ 616 (635)
T PLN00128 587 DFTKRDDENWMKHTLGYWEEGKVRLDYRPV 616 (635)
T ss_pred CCCCCCccccccEEEEEecCCcceEEeccc
Confidence 9999998888887753 2333333333443
No 6
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=2.1e-93 Score=792.33 Aligned_cols=523 Identities=35% Similarity=0.557 Sum_probs=452.5
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeecc----CCCCCHHHHHHHHHHhccCCCCH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL----CPSDSVESHMQDTIVAGAYLCDD 154 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~----~~~d~~~~~~~d~~~~g~~~~~~ 154 (641)
..++||||||+|.|||+||+.|++.| +|+||||....+|+|.+++||+++.. ++.|+++.|+.|+++.+.+++++
T Consensus 3 ~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~ 82 (566)
T PRK06452 3 KIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQ 82 (566)
T ss_pred cccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCH
Confidence 35799999999999999999999999 99999999888899999999998644 36799999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEE
Q 006532 155 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 234 (641)
Q Consensus 155 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~ 234 (641)
++++.+++++++.++||+++|++|+++++|.+....+++|+++|.++..+.+|..++..|.+.+.+ .||++++++.+++
T Consensus 83 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~-~gv~i~~~~~~~~ 161 (566)
T PRK06452 83 DAAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSG-LNVDFYNEWFSLD 161 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHh-CCCEEEeCcEEEE
Confidence 999999999999999999999999998888877778899999999988888999999999998887 4999999999999
Q ss_pred EEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeecccccccccee
Q 006532 235 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 314 (641)
Q Consensus 235 l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~ 314 (641)
|+++ +| +|+||++.+..+|+...|+||+|||||||++.+|+.+++++.+||||+.||+++||.+.+|||+||||+.
T Consensus 162 Li~~-~g---~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l~~~~~~~~~~tGDGi~mA~~aGA~l~~me~~q~~pt~ 237 (566)
T PRK06452 162 LVTD-NK---KVVGIVAMQMKTLTPFFFKTKAVVLATGGMGMLYRHTTNSYINTGDGFGIALRAGAALKDPEFVQFHPTA 237 (566)
T ss_pred EEEE-CC---EEEEEEEEECCCCeEEEEEeCeEEECCCccccccCCCCCCCCcChHHHHHHHHcCCcccCCcceEEeeeE
Confidence 9986 66 8999999887778888999999999999999999999999999999999999999999999999999987
Q ss_pred ecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC---CeEEEeCC
Q 006532 315 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE---KYVLLDIS 390 (641)
Q Consensus 315 ~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~~~~r~~~~~~i~~~~~~~~~---~~v~lD~~ 390 (641)
+... .+++++.++++|+++||.+|+|||++|+|. .++.+||++++++..++.++++ .++|+|.+
T Consensus 238 ~~~~------------~~l~~e~~rg~g~ilvN~~G~RF~~e~~~~~~~l~~rd~v~~ai~~e~~~g~g~~~~~v~lD~~ 305 (566)
T PRK06452 238 LYPS------------DVLISEAARGEGGILKNVKGERFMTKYAPKKLDLAPRDIVSRAIITEIREGRGFPGGYVGLDLT 305 (566)
T ss_pred ECCC------------CeEEEEeeecCCCEEECCCCCCCccccCccccccCCccHHHHHHHHHHHhCCCCCCCeEEEEcc
Confidence 6421 357788899999999999999999999876 6899999999999999987543 47999999
Q ss_pred CCChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCCcc-cCCeeecccccCCCCCCCCccchhhh
Q 006532 391 HKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGETN-VRGLYVAGEVACTGLHGANRLASNSL 468 (641)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~-ipGLyAaGe~a~~g~~Ga~rl~g~sl 468 (641)
+.+.+.+.++||.+.+.+.+ .|+|+.+++|+|.|.+||+||||+||.+++|+ ||||||||||+|+|+||+|||+||||
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~h~~~GGi~vd~~~~t~~IpGLyAaGE~a~~g~hGanrlggnsl 385 (566)
T PRK06452 306 HLGEEYIKERLALAVEAAKSFAGVDAFTEPIPVRPAQHYYMGGIDVDIDGRNPDIVGLFSAGEAACVSVHGANRLGSNSL 385 (566)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCCCCCeeeecccCEecCCeEECCCCCcCCcCCeEecccccccCCCCcccccchHH
Confidence 99888888899998888888 69999999999999999999999999999996 99999999999779999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccccccccccccCCccc-c-ccch-hhhhchHHHHHHHHHHHHhcCccccCHHHHH
Q 006532 469 LEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLG-C-NVMH-NILRRTKEVRKELQSIMWRYVGIVRSTTSLQ 545 (641)
Q Consensus 469 ~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~ 545 (641)
++|+|||++||++|+++++.... ..... .... .+.... . .... .....+.+++++||++||+|+||+|++++|+
T Consensus 386 ~~~~v~G~~Ag~~aa~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~ 462 (566)
T PRK06452 386 LDTLVFGQVTGRTVVQFLKSNPG-NPTSN-YEKE-AEKVVDDAYKFVKSESGVHFGQILEKLRDTMWDYVGIYRDEGGLL 462 (566)
T ss_pred HHHHHHHHHHHHHHHHHHhcccC-CCccc-hhhh-HHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhhccccHHHHH
Confidence 99999999999999998753211 00000 0000 000000 0 0000 0112467889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeeec
Q 006532 546 TAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIIL 622 (641)
Q Consensus 546 ~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~ 622 (641)
+||++|++|++++.++...+ ....++++++++|++||+++|+++++|||+|+||||+|||.|||++||++|++++++
T Consensus 463 ~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~ 540 (566)
T PRK06452 463 NAMSEINKLRGMISNMYVTDKSKVYNTEFFNALELRNMLDLALVIAKSALERKESRGAHYRTDYPDRDDNNWLKHTIA 540 (566)
T ss_pred HHHHHHHHHHHHHHhhccCCcccccChhhHHHHHHHhHHHHHHHHHHHHHhCCCCcceeccCCCCCCCchhhccEEEE
Confidence 99999999998877653221 112356788999999999999999999999999999999999999998878877763
No 7
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=100.00 E-value=5.9e-93 Score=796.74 Aligned_cols=521 Identities=32% Similarity=0.480 Sum_probs=450.6
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccC-----CCCCHHHHHHHHHHhccCCCC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC-----PSDSVESHMQDTIVAGAYLCD 153 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~-----~~d~~~~~~~d~~~~g~~~~~ 153 (641)
+.++||||||||.|||+||+.|++.| +|+||||....+|+|.+++||+.+..+ ..|+++.|+.|+++.+.+.||
T Consensus 3 ~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~s~~a~GGi~a~~g~~~~g~~Ds~e~~~~Dt~k~~~~~~D 82 (657)
T PRK08626 3 IIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEGDNEDVHFADTVKGSDWGCD 82 (657)
T ss_pred ceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcchHHHhhhHHhhccccccCCCCCHHHHHHHHHHhcCCCCC
Confidence 46799999999999999999999999 999999999988889999999876643 578999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHcCCccccCCCCC---------------------cccccCCCccccceeeccCCcHHHHHH
Q 006532 154 DETVRVVCTEGPDRIRELIAIGASFDRGEDGN---------------------LHLAREGGHSHHRIVHAADMTGREIER 212 (641)
Q Consensus 154 ~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~---------------------~~~~~~gg~~~~r~~~~~~~~g~~~~~ 212 (641)
++.++.+++++++.++||+++|++|.+..+|. +....+++++.+|+++..+.+|..+..
T Consensus 83 ~~~vr~~v~~sp~~i~~L~~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~i~~r~~GG~~~~R~~~~~d~tG~~l~~ 162 (657)
T PRK08626 83 QEVARMFVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGLINARDFGGTKKWRTCYTADGTGHTMLY 162 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCeecCCCcccccccccccccccccccccccccccccccccceeEecCCCcHHHHHH
Confidence 99999999999999999999999998765442 223456888999999988889999999
Q ss_pred HHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchh
Q 006532 213 ALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGM 292 (641)
Q Consensus 213 ~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~ 292 (641)
.|.+.+.+ .||+|++++.+++|+.+ +| +|.|+++.+..+|+.+.|.||+|||||||++++|..++++..+||||+
T Consensus 163 ~L~~~~~~-~gv~i~~~~~~~~Li~~-~g---~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~y~~ttn~~~~tGdG~ 237 (657)
T PRK08626 163 AVDNEAIK-LGVPVHDRKEAIALIHD-GK---RCYGAVVRCLITGELRAYVAKATLIATGGYGRIYKVTTNAVICEGIGA 237 (657)
T ss_pred HHHHHHHh-CCCEEEeeEEEEEEEEE-CC---EEEEEEEEEcCCCcEEEEEcCeEEECCCcccCCCCCCCCCCCcChHHH
Confidence 99988887 59999999999999986 56 899999988778988899999999999999999999999999999999
Q ss_pred HHHHhcCC-eeeccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccc-cccCchhHHH
Q 006532 293 AMAHRAQA-VISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVA 370 (641)
Q Consensus 293 ~~a~~aGa-~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~~~~r~~~~ 370 (641)
+||+++|+ .+.||||+||||+.+... .+++++.++++|++++|.+|+|||++|+|. .|+++||+++
T Consensus 238 ~mA~~aGaa~l~~mE~vqfhPt~~~~~------------g~l~~e~~rg~G~ilvn~~G~RF~~~y~p~~~Ela~rd~vs 305 (657)
T PRK08626 238 AIALETGVAPLGNMEAVQFHPTAIVPS------------GILVTEGCRGDGGLLRDKDGYRFMPDYEPEKKELASRDVVS 305 (657)
T ss_pred HHHHHcCCccccCccceEEeccEECCC------------CeEEEeeccCCCEEEECCCCCCCCcccCcccccccchhHHH
Confidence 99999996 799999999999887532 467889999999999999999999999874 5899999999
Q ss_pred HHHHHHHHhcCC------CeEEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCCc-c
Q 006532 371 RSIDDQLKKRNE------KYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGET-N 442 (641)
Q Consensus 371 ~~i~~~~~~~~~------~~v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T-~ 442 (641)
++|.+++.++++ ..||+|+++.+.+.+.+++|++.+++.. .|+||.+++++|.|..||+||||+||.+++| +
T Consensus 306 rai~~~~~~g~g~~~~~~~~v~lD~~~~~~~~i~~~~~~i~e~~~~~~giD~~~~~i~v~P~~hytmGGi~vd~~~~t~~ 385 (657)
T PRK08626 306 RRMTEHIRKGKGVKSPYGPHLWLDIRILGRKHIETNLREVQEICENFLGIDPAKDWIPVRPTQHYSMGGIRTNPTGESYG 385 (657)
T ss_pred HHHHHHHHhcCCCCCCCCCEEEEECCCCCHHHHHHHHhHHHHHHHHHcCCCCcCceEEEEecccEecCCceECCCCCCcc
Confidence 999999987532 3599999999888888899999999987 6999999999999999999999999999999 6
Q ss_pred cCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCccccccch-----hhh
Q 006532 443 VRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMH-----NIL 517 (641)
Q Consensus 443 ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 517 (641)
||||||||||+|+|+||+|||+||||++|+|||++||++|++|++....+..... .. ..... ....+. +..
T Consensus 386 I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~~~~~~~~~~~-~~-~~~~~--~~~~~~~~~~~~~~ 461 (657)
T PRK08626 386 LKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFCLGNELEIDTAL-VE-KFVKK--QQDRIDELIAGEGK 461 (657)
T ss_pred cCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhhccCCccccch-hh-hHHHH--HHHHHHHHhhcCCC
Confidence 9999999999988999999999999999999999999999998754321100000 00 00000 000000 011
Q ss_pred hchHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhc
Q 006532 518 RRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALAR 596 (641)
Q Consensus 518 ~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R 596 (641)
.++.+++++||++||+++||+|++++|++|+++|++|++++.++.... ....++++++++|++|||++|+++++|||+|
T Consensus 462 ~~~~~i~~~lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~n~~~~~a~e~~~~l~~a~~i~~aAl~R 541 (657)
T PRK08626 462 ENVFEIKNEMQEIMMEKVGIFRNGPELEKAVKELQELLERSKNIGLKSKKRGANPELEEALRVPRMLKLALCVAYGALAR 541 (657)
T ss_pred CCHHHHHHHHHHHHhcccCEEecHHHHHHHHHHHHHHHHHHHHhcccCcccccCHHHHHHHHHHhHHHHHHHHHHHHHhC
Confidence 356789999999999999999999999999999999998887653221 1224678899999999999999999999999
Q ss_pred ccCcccccccCCCCCccCCCCCeee
Q 006532 597 HESRGLHYMVDFPHVEENKRLPTII 621 (641)
Q Consensus 597 ~ESRG~h~R~D~P~~d~~~~~~~~~ 621 (641)
+||||+|||+|||++||++|+++++
T Consensus 542 ~ESRG~H~R~DyP~~~d~~~~~~~~ 566 (657)
T PRK08626 542 TESRGAHAREDYPKRNDRDWLNRTL 566 (657)
T ss_pred CCCccceecCcCcccCchhhceEEE
Confidence 9999999999999999988888775
No 8
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=1.9e-92 Score=786.21 Aligned_cols=523 Identities=35% Similarity=0.525 Sum_probs=448.4
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccC--CCCCHHHHHHHHHHhccCCCCHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDDETV 157 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~--~~d~~~~~~~d~~~~g~~~~~~~~~ 157 (641)
.++||||||+|.|||+||+.|++.| +|+||||....+|+|.+++||+++..+ +.|+++.|++|+++.+.++++++++
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v 85 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI 85 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 4689999999999999999999999 999999998888999999999987654 6799999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCcc-------ccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcce
Q 006532 158 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS-------HHRIVHAADMTGREIERALLEAVVSDPNISVFEHH 230 (641)
Q Consensus 158 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~-------~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~ 230 (641)
+.+++++++.++||+++|++|++.++|.+....+++|+ .+|+++..+.+|..++..|.+++.+ .||++++++
T Consensus 86 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~-~gi~i~~~~ 164 (588)
T PRK08958 86 EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLK-NHTTIFSEW 164 (588)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhh-cCCEEEeCc
Confidence 99999999999999999999999888877766677775 4789998888999999999998876 599999999
Q ss_pred EEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccc
Q 006532 231 FAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQF 310 (641)
Q Consensus 231 ~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~ 310 (641)
.+++|+++++| +|+||++.+..+|+.+.|+||+|||||||++++|..+++++.+||||+.||+++||.+.||||+||
T Consensus 165 ~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~q~ 241 (588)
T PRK08958 165 YALDLVKNQDG---AVVGCTAICIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMALRAGVPVQDMEMWQF 241 (588)
T ss_pred EEEEEEECCCC---EEEEEEEEEcCCCcEEEEEcCeEEECCCCcccccccccCCCCCCcHHHHHHHHcCCcCcCCcceEe
Confidence 99999986566 899999988778988899999999999999999998999999999999999999999999999999
Q ss_pred cceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC------C
Q 006532 311 HPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE------K 383 (641)
Q Consensus 311 ~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~~~~r~~~~~~i~~~~~~~~~------~ 383 (641)
||+.+... .+++++.++++|+++||.+|+|||++|+|. .++.+||++++++..++.++.+ .
T Consensus 242 ~Pt~~~~~------------~~l~~e~~rg~g~ilvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~~~ 309 (588)
T PRK08958 242 HPTGIAGA------------GVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGP 309 (588)
T ss_pred ecCcccCC------------ceEEeeccccCceEEECCCCCChhhhhCccccccCChhHHHHHHHHHHHhcCCCcCCCCC
Confidence 99876421 467788899999999999999999999886 5899999999999999876532 2
Q ss_pred eEEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCC----------cccCCeeecccc
Q 006532 384 YVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGE----------TNVRGLYVAGEV 452 (641)
Q Consensus 384 ~v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~----------T~ipGLyAaGe~ 452 (641)
.+|+|+++++.+.+.+++|.+.+.++. .++|+.++|++|.|.+||++|||.||.+++ |+|||||||||+
T Consensus 310 ~v~ld~~~l~~~~l~~~~~~~~~~~~~~~~~d~~~~~i~v~p~~h~t~GGi~vd~~g~v~~~d~~~~~t~IpGLYAaGE~ 389 (588)
T PRK08958 310 HAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEI 389 (588)
T ss_pred eEEEEcccCCHHHHHHHcccHHHHHHHhcCCCcCCCcceeehhhcEeCCCeeECCCceeeccccccCCCccCCeEecccc
Confidence 489999999988888999999888877 489999999999999999999999999988 579999999999
Q ss_pred cCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcccc--cccccccccccccCCccccccchhhhhchHHHHHHHHHH
Q 006532 453 ACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSI--DLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSI 530 (641)
Q Consensus 453 a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 530 (641)
+|+|+||+||++||||++|+|||++||++|+++++.... ++... ........ ............+.+++++||++
T Consensus 390 a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~ 466 (588)
T PRK08958 390 ACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESLAEQGALRDASES-DIEASLAR--LNRWNNNRNGEDPVQIRKALQEC 466 (588)
T ss_pred cccCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhccCCcccCCHH-HHHHHHHH--HhhhcccCCCCCHHHHHHHHHHH
Confidence 977999999999999999999999999999998743210 01000 00000000 00000000113467789999999
Q ss_pred HHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhccC-cccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCC
Q 006532 531 MWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHG-WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 609 (641)
Q Consensus 531 m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P 609 (641)
||+|+||+|++++|++||++|++|++++.++...+. ...+.++++++|++|||++|+++++|||+|+||||+|||+|||
T Consensus 467 m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~i~~aal~R~ESRG~H~R~D~P 546 (588)
T PRK08958 467 MQNNFSVFREGDAMAKGLEELKVIRERLKNARLDDTSSEFNTQRIECLELDNLMETAYATAVSANFRTESRGAHSRFDFP 546 (588)
T ss_pred HhCCEEEEECHHHHHHHHHHHHHHHHHHHhcccCccccccchhhHHHHHHHhHHHHHHHHHHHHHhCCCCcccccCCCCC
Confidence 999999999999999999999999988876432211 1224467889999999999999999999999999999999999
Q ss_pred CCccCCCCCeeec
Q 006532 610 HVEENKRLPTIIL 622 (641)
Q Consensus 610 ~~d~~~~~~~~~~ 622 (641)
++|+++|++++++
T Consensus 547 ~~~d~~~~~~~~~ 559 (588)
T PRK08958 547 DRDDENWLCHSLY 559 (588)
T ss_pred CCCchhhceEEEE
Confidence 9998878877654
No 9
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=100.00 E-value=2.2e-92 Score=788.90 Aligned_cols=523 Identities=34% Similarity=0.522 Sum_probs=451.0
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccC--CCCCHHHHHHHHHHhccCCCCHH
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDDE 155 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~--~~d~~~~~~~d~~~~g~~~~~~~ 155 (641)
.+.++||||||||.|||+||+.|++.| +|+||||....+|+|.+++||+++... +.|+++.|+.|+++.+.+++|++
T Consensus 26 ~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~ 105 (617)
T PTZ00139 26 IDHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQD 105 (617)
T ss_pred cccccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence 345799999999999999999999999 999999999988999999999987654 57999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCcc--------ccceeeccCCcHHHHHHHHHHHHHcCCCcEEE
Q 006532 156 TVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS--------HHRIVHAADMTGREIERALLEAVVSDPNISVF 227 (641)
Q Consensus 156 ~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~--------~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~ 227 (641)
+++.+++++++.++||+++|++|+++.+|.+....+++|+ .+|+++..+.+|..++..|.+.+.+ .||+|+
T Consensus 106 lv~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~-~gv~i~ 184 (617)
T PTZ00139 106 AIQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLK-YDCNFF 184 (617)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHh-CCCEEE
Confidence 9999999999999999999999999888876665667764 4788888888999999999999987 599999
Q ss_pred cceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeecccc
Q 006532 228 EHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEF 307 (641)
Q Consensus 228 ~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~ 307 (641)
+++.+++|+.+++| +|+||++.+..+|+.+.|+||+|||||||++++|..++++..+||||+.||+++||.+.||||
T Consensus 185 ~~~~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~mef 261 (617)
T PTZ00139 185 IEYFALDLIMDEDG---ECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRAYFSCTSAHTCTGDGGAMVSRAGLPLQDLEF 261 (617)
T ss_pred eceEEEEEEECCCC---EEEEEEEEECCCCeEEEEECCcEEEeCCCCccccCCcCCCCCcccHHHHHHHHcCCCccCCce
Confidence 99999999985466 899999988778998899999999999999999999999999999999999999999999999
Q ss_pred ccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC----
Q 006532 308 VQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE---- 382 (641)
Q Consensus 308 ~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~~~~r~~~~~~i~~~~~~~~~---- 382 (641)
+||||+.+... .+++++.++++|++++|.+|+|||++|++. .++.+|+++++++..++.++.+
T Consensus 262 ~q~~pt~~~~~------------~~l~~e~~rg~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~g~g~~~~ 329 (617)
T PTZ00139 262 VQFHPTGIYGA------------GCLITEGCRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRAMTIEILEGRGCGPN 329 (617)
T ss_pred EEeccccccCC------------CcEEEeeccCCCcEEECCCCCCcccccCccccccccchHHHHHHHHHHHhcCCCCCC
Confidence 99999876532 357888899999999999999999999887 5899999999999999876532
Q ss_pred -CeEEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCCc----------ccCCeeecc
Q 006532 383 -KYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGET----------NVRGLYVAG 450 (641)
Q Consensus 383 -~~v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T----------~ipGLyAaG 450 (641)
.++|+|.++++++.+.+++|.+.+.+.. .|+|+.++++||.|..||++|||.||.++|| +||||||||
T Consensus 330 ~~~v~lD~~~~~~~~l~~~~~~~~~~~~~~~G~D~~~~~i~v~p~~h~t~GGi~vd~~~~v~d~~~~~~~t~I~GLyAaG 409 (617)
T PTZ00139 330 KDHIYLDLTHLPPETLHERLPGISETAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNWKTQVLTQRNGDDDKIVPGLLAAG 409 (617)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEecccceecCCeEEcCCceeeccccccCCCccCCceecc
Confidence 4699999999999999999998888876 6999999999999999999999999999886 799999999
Q ss_pred cccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCccc-cccch--hhhhchHHHHHHH
Q 006532 451 EVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLG-CNVMH--NILRRTKEVRKEL 527 (641)
Q Consensus 451 e~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~l 527 (641)
|++|+|+||+|||+||+|++|+|||++||++|+++.+....... .. .. ....... ...+. +....+.+++++|
T Consensus 410 E~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~~~~~~~~~~-~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l 485 (617)
T PTZ00139 410 EAACASVHGANRLGANSLLDIVVFGRAAANTVMEILKPGRPQPD-LP--KD-AGEASIARLDKIRHNKGDISTAQIRKRM 485 (617)
T ss_pred cccccCcCCCcccchhhHHHHHHHHHHHHHHHHHhhcccCCCcc-cc--hh-hhHHHHHHHHHHhcccCCcChHHHHHHH
Confidence 99988999999999999999999999999999988643210000 00 00 0000000 00000 0112477889999
Q ss_pred HHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCccccccc
Q 006532 528 QSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMV 606 (641)
Q Consensus 528 ~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~ 606 (641)
|++||+|+||+|++++|++|+++|++|++++..+...+ ....++++++++|++|||++|+++++|||+|+||||+|||.
T Consensus 486 q~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~ 565 (617)
T PTZ00139 486 QRTMQKHAAVFRIGESLQEGVEKIKEIYSDFKDVKIKDKSLVWNTDLIETLELENLLTQAKQTILSAEARKESRGAHARD 565 (617)
T ss_pred HHHHhhhceeEECHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHhHHHHHHHHHHHHHhccCcchhhccC
Confidence 99999999999999999999999999998876543211 12245788999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCeee
Q 006532 607 DFPHVEENKRLPTII 621 (641)
Q Consensus 607 D~P~~d~~~~~~~~~ 621 (641)
|||++||++|+++++
T Consensus 566 D~P~~~d~~~~~~~~ 580 (617)
T PTZ00139 566 DFPERDDKNWMKHTL 580 (617)
T ss_pred cCCcCCchhhceEEE
Confidence 999999877777775
No 10
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=100.00 E-value=3.2e-92 Score=784.45 Aligned_cols=522 Identities=32% Similarity=0.488 Sum_probs=454.3
Q ss_pred cccccEEEECccHHHHHHHHHHHhc--C-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDET 156 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~--G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~ 156 (641)
+.++||||||||+|||+||+.|++. | +|+||||....+|++.+++||+++...+.|+++.|+.|+++.+.+++++++
T Consensus 2 t~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~ 81 (582)
T PRK09231 2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDV 81 (582)
T ss_pred ceeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHH
Confidence 4579999999999999999999987 5 899999999889999999999988878889999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006532 157 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 236 (641)
Q Consensus 157 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~ 236 (641)
++.+++++++.++||+++|++|+++++|.+....+++|+++|.++..+.+|..+...|.+.+.+..+|++++++.+++|+
T Consensus 82 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li 161 (582)
T PRK09231 82 VEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDIL 161 (582)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEE
Confidence 99999999999999999999999988888877788999999999988889999999999888775689999999999999
Q ss_pred ecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeec
Q 006532 237 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALA 316 (641)
Q Consensus 237 ~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~ 316 (641)
.+ ++ +|.||++.+..+|+...|+||.|||||||++++|..++++..+||||+.||+++||.+.||||+||||+.+.
T Consensus 162 ~~-~g---~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~~~~t~~~~~tGdG~~mA~~aGA~l~~me~~q~~Pt~~~ 237 (582)
T PRK09231 162 VD-DG---HVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAYRHGVPLRDMEFVQYHPTGLP 237 (582)
T ss_pred Ee-CC---EEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCCCCCCCCCCCccHHHHHHHHcCCCccCccceeeecceeC
Confidence 86 56 899999988778888899999999999999999988889999999999999999999999999999998874
Q ss_pred CCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccc---------cc---cccCchhHHHHHHHHHHHhcC---
Q 006532 317 DEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD---------ER---AELAPRDVVARSIDDQLKKRN--- 381 (641)
Q Consensus 317 ~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~---------~~---~~~~~r~~~~~~i~~~~~~~~--- 381 (641)
.. .+++++.++++|++++|.+|+|||++|+ |. .++.+||+++++++.++..+.
T Consensus 238 ~~------------~~l~~e~~rg~g~~lvn~~G~RF~~~y~~~~~~~~~~p~~~~~el~~rd~v~~ai~~~~~~g~~~~ 305 (582)
T PRK09231 238 GS------------GILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTIS 305 (582)
T ss_pred CC------------CceeeecccCCCeEEECCCCCCchhccccccccccccccccccccccHHHHHHHHHHHHHhCCCcc
Confidence 31 4678888999999999999999999884 33 489999999999999987653
Q ss_pred ---CCeEEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCC
Q 006532 382 ---EKYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGL 457 (641)
Q Consensus 382 ---~~~v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~ 457 (641)
+..||+|+++.+.+.+.+++|++.+++++ .|+|+.++++++.|..|+++|||+||.+++|+||||||||||+|+|+
T Consensus 306 ~~~g~~v~ld~~~~~~~~~~~~~~~i~e~~~~~~G~d~~~~~i~v~p~~h~t~GGi~vd~~~~t~i~GLyAaGe~~~~g~ 385 (582)
T PRK09231 306 TPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGL 385 (582)
T ss_pred CCCCCEEEEECCcCCHHHHHHHhhHHHHHHHHHcCCCCCCCeeeeeceeeeeCCCEEECCCCccccCCEEeccccccccc
Confidence 23699999999988888899999999998 69999999999999999999999999999999999999999987799
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCccccccch-----hhhhchHHHHHHHHHHHH
Q 006532 458 HGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMH-----NILRRTKEVRKELQSIMW 532 (641)
Q Consensus 458 ~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~m~ 532 (641)
||+||++||||++|+|||++||++|++|++....... ..... .... ...++. +....+.+++++||++||
T Consensus 386 hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~~~~~~~~--~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 460 (582)
T PRK09231 386 HGANRLGSNSLAELVVFGRVAGEQAAERAATAGPGNE--AALDA-QAAD--VEQRLKALVNQEGGENWAKIRDEMGLSME 460 (582)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCccc--cchhh-HHHH--HHHHHHHHhhccCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998754321100 00000 0000 000000 011347789999999999
Q ss_pred hcCccccCHHHHHHHHHHHHHHHHHHHHhhhc-cCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccC--CC
Q 006532 533 RYVGIVRSTTSLQTAEWRIDELEAEWETYLFE-HGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVD--FP 609 (641)
Q Consensus 533 ~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D--~P 609 (641)
+++||+|++++|+++|.+|++|++++..+... .....++++++++|++|||++|+++++|||+|+||||+|||.| ||
T Consensus 461 ~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~~~P 540 (582)
T PRK09231 461 EGCGIYRTPELMQKTIDKLAELKERFKRVRITDTSSVFNTDLLYTIELGYGLDVAECMAHSALARKESRGAHQRLDEGCT 540 (582)
T ss_pred hcCcEEECHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcccccchhcccccCCC
Confidence 99999999999999999999999887664221 1222457889999999999999999999999999999999999 99
Q ss_pred CCccCCCCCeeec
Q 006532 610 HVEENKRLPTIIL 622 (641)
Q Consensus 610 ~~d~~~~~~~~~~ 622 (641)
++|+++|.++++.
T Consensus 541 ~~~d~~~~~~~~~ 553 (582)
T PRK09231 541 ERDDVNFLKHTLA 553 (582)
T ss_pred ccChhhhceEEEE
Confidence 9988878877753
No 11
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=8.7e-92 Score=786.16 Aligned_cols=554 Identities=24% Similarity=0.346 Sum_probs=456.1
Q ss_pred ccCCCCChhHhHhhhcccCccccCCCCccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCC-CCccccccCceee
Q 006532 52 FNFSHSPVSENWKSLRTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH-ESNTNYAQGGVSA 129 (641)
Q Consensus 52 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~-~g~s~~a~ggi~~ 129 (641)
.++|.+|..+.|....+.. .......+.++||||||||.|||+||+.|++.| +|+||||.... +|++.+++||+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g~s~~a~GGi~a 84 (640)
T PRK07573 7 AKIPEGPIEEKWDRYKFHL--KLVNPANKRKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRAHSIAAQGGINA 84 (640)
T ss_pred CCCCCCcchhhhhhccccc--cccCCccccccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhchHh
Confidence 5688999999998776665 222344456899999999999999999999999 99999986554 4678889999876
Q ss_pred ccC---CCCCHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCc
Q 006532 130 VLC---PSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMT 206 (641)
Q Consensus 130 ~~~---~~d~~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~ 206 (641)
... +.|+++.|+.|+++.+.+++++++++.+++++++.++||+++|++|.++.++.+....+++|+++|.++..+.+
T Consensus 85 ~~~~~~~~Ds~~~~~~d~~~~g~~~~d~~lv~~l~~~s~~~i~wL~~~GV~f~~~~~g~~~~~~~gghs~~R~~~~~~~t 164 (640)
T PRK07573 85 AKNYQNDGDSVYRLFYDTVKGGDFRAREANVYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGGAQVSRTFYARGQT 164 (640)
T ss_pred HhhccccCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCCccccCCCCceeccccCCcccceeEeCCCCC
Confidence 543 57999999999999999999999999999999999999999999999877777777778999999999988888
Q ss_pred HHHHH----HHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCC
Q 006532 207 GREIE----RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTT 282 (641)
Q Consensus 207 g~~~~----~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~ 282 (641)
|..++ ..|.+.+++ .||+|++++.+++|+.+ ++ +|+||++.+..+|+...|.||+|||||||++++|..++
T Consensus 165 G~~i~~~l~~~L~~~~~~-~gV~i~~~t~v~~Li~d-~g---~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~~~~tt 239 (640)
T PRK07573 165 GQQLLLGAYQALSRQIAA-GTVKMYTRTEMLDLVVV-DG---RARGIVARNLVTGEIERHTADAVVLATGGYGNVFYLST 239 (640)
T ss_pred chhHHHHHHHHHHHHHHh-cCCEEEeceEEEEEEEe-CC---EEEEEEEEECCCCcEEEEECCEEEECCCCcccCCCCCC
Confidence 87776 445556665 59999999999999986 56 89999998766788888999999999999999999899
Q ss_pred CcccCccchhHHHHhcCCeeeccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCC------------
Q 006532 283 NPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGM------------ 350 (641)
Q Consensus 283 ~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G------------ 350 (641)
++..+||||+.||+++||.+.||||+||||+.+...+.. . ...++++++++++|+++||.+|
T Consensus 240 ~~~~~tGdGi~mA~~aGA~l~~me~vq~hPt~~~~~g~~----~--~~~~li~ea~rg~G~ilvn~~g~~~~~~~~~~~~ 313 (640)
T PRK07573 240 NAMGSNATAIWRAHKKGAYFANPCFTQIHPTCIPVSGDY----Q--SKLTLMSESLRNDGRIWVPKKKGDKRKPNDIPEE 313 (640)
T ss_pred CCCCcCcHHHHHHHHcCCCccCccceeeccccccCCCcc----c--ccceEEeccccCCceEEEcCcccccccccccccc
Confidence 999999999999999999999999999999977543210 0 0146889999999999999984
Q ss_pred Cc--ccccccc-ccccCchhHHHHHHHHHHHhcCC-----CeEEEeCCC----CChhHHHhhChhHHHHHHH-cCCCCCC
Q 006532 351 ER--FMPLYDE-RAELAPRDVVARSIDDQLKKRNE-----KYVLLDISH----KPTEKILSHFPNIAAECLK-YGLDITS 417 (641)
Q Consensus 351 ~r--f~~~~~~-~~~~~~r~~~~~~i~~~~~~~~~-----~~v~lD~~~----~~~~~~~~~~~~~~~~~~~-~G~d~~~ 417 (641)
+| ||.+|.+ .++++|||+++++|+.|++++++ .+||||+++ .+.+.+.++||.+.+.+.+ .|+||.+
T Consensus 314 ~~~~f~~~~~~~~~el~~rd~v~rai~~e~~~grg~~~~~~~v~ld~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~d~~~ 393 (640)
T PRK07573 314 ERDYYLERRYPAFGNLVPRDVASRAAKERCDAGRGVGPTGLGVYLDFADAIKRLGKDVIRERYGNLFDMYERITGENPYE 393 (640)
T ss_pred hhhhchhhhCccccCCCCcCHHHHHHHHHHHhcCCCCCCCCEEEEeCchhhhhcCHHHHHHhChHHHHHHHHhcCCCccc
Confidence 56 9987665 47999999999999999988643 369999985 5667789999999999987 5999999
Q ss_pred CCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHH-HHHhhhcc-cc-ccc
Q 006532 418 QPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQP-SIDHKKST-SI-DLS 494 (641)
Q Consensus 418 ~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~-aa~~~~~~-~~-~~~ 494 (641)
++|||.|++||+||||+||.+++|+||||||||||+ +|+||+|||+||||++|+|||++||+. |++|++.. .. ...
T Consensus 394 ~~i~v~p~~hy~~GGi~vd~~~~T~i~GLyAaGE~~-~g~HGanRL~~nsL~e~lv~G~~ag~~~a~~~~~~~~~~~~~~ 472 (640)
T PRK07573 394 TPMRIYPAVHYTMGGLWVDYNLMSTIPGLFVIGEAN-FSDHGANRLGASALMQGLADGYFVLPYTIGNYLADTIGTPKVS 472 (640)
T ss_pred CeeeeecccceecCCEEECCCCccccCCEEECcccc-ccCCCcccccchhHHHHHHHHHHHhHHHHHHHHHhhcccccCC
Confidence 999999999999999999999999999999999995 799999999999999999999999988 66766432 10 000
Q ss_pred c-cccccccccCCccccccchh---h--hhchHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhc--cC
Q 006532 495 A-SNWWTRTVVPKSLGCNVMHN---I--LRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFE--HG 566 (641)
Q Consensus 495 ~-~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~--~~ 566 (641)
. ...... ... ....++.. . ..++.+++++||++||+|+||+|++++|++|+++|++|++++.+.... ..
T Consensus 473 ~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~ 549 (640)
T PRK07573 473 TDHPEFKE-AEA--EVQDRIDRLLNIKGKRTVDSFHRELGKIMWDYCGMARNEEGLKKALEKIRALREEFWKNVRVPGSA 549 (640)
T ss_pred ccccchhh-HHH--HHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCccEEeCHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 0 000000 000 00000000 0 124678899999999999999999999999999999998876542211 11
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCC------CCccCCCCCeeec
Q 006532 567 WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP------HVEENKRLPTIIL 622 (641)
Q Consensus 567 ~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P------~~d~~~~~~~~~~ 622 (641)
...++++++++|++||+++|+++++|||.|+||||+|||.||| ++||++|++++++
T Consensus 550 ~~~~~~~~~~~el~n~l~~A~~i~~aAl~R~ESRG~H~R~D~P~~~~~~~~~d~~~~~~~~~ 611 (640)
T PRK07573 550 DELNQELEKAGRVADFLELGELMCRDALHREESCGGHFREEHQTEDGEALRDDENFAYVAAW 611 (640)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCccCCCCccccccChhhhceEEEE
Confidence 1236778899999999999999999999999999999999999 6777667766654
No 12
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=1.6e-91 Score=779.87 Aligned_cols=525 Identities=29% Similarity=0.421 Sum_probs=445.3
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccC---CCCCHHHHHHHHHHhccCCCCHHHH
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC---PSDSVESHMQDTIVAGAYLCDDETV 157 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~---~~d~~~~~~~d~~~~g~~~~~~~~~ 157 (641)
.+||||||||+|||+||+.|++.| +|+||||....+|+|.+++||+++... +.|+++.|+.|+++.+.++++++++
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~v 82 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPPV 82 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHHHH
Confidence 469999999999999999999999 999999999988999999999987765 6799999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcC---CCcEEEcceEEEE
Q 006532 158 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSD---PNISVFEHHFAID 234 (641)
Q Consensus 158 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~---~gv~i~~~~~v~~ 234 (641)
+.+++++++.++||+++|++|++..+|.+....+++|+++|+++..+.+|..++..|.+.+.+. .+|++++++.+++
T Consensus 83 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~ 162 (589)
T PRK08641 83 KAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLG 162 (589)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEEEeeEEEEE
Confidence 9999999999999999999999888888877888999999999888889999999998887653 2389999999999
Q ss_pred EEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeecccccccccee
Q 006532 235 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 314 (641)
Q Consensus 235 l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~ 314 (641)
|+++++| +|+||++.+..+++.+.|+||+|||||||++++|..+++++.+||||++||+++||.+.||||+||||+.
T Consensus 163 Li~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~y~~tt~~~~~tGdG~~mA~~aGA~l~~mef~q~hPt~ 239 (589)
T PRK08641 163 AVLDDEG---VCRGIVAQDLFTMEIESFPADAVIMATGGPGIIFGKSTNSTINTGSAASRVYQQGAYYANGEFIQIHPTA 239 (589)
T ss_pred EEECCCC---EEEEEEEEECCCCcEEEEECCEEEECCCCCcCCCCCCCCCCCCchHHHHHHHHcCCCCcCCccEEEeeee
Confidence 9986566 8999999987778888899999999999999999999999999999999999999999999999999997
Q ss_pred ecCCCCCCCCCCCCCccceeeccccCCCcEE-EeCCCCc--cccc-cccccccCchhHHHHHHHHHHHh-c----CCCeE
Q 006532 315 LADEGLPIKPKKTRENSFLITEAVRGDGGIL-YNLGMER--FMPL-YDERAELAPRDVVARSIDDQLKK-R----NEKYV 385 (641)
Q Consensus 315 ~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~-vn~~G~r--f~~~-~~~~~~~~~r~~~~~~i~~~~~~-~----~~~~v 385 (641)
+...+ ..+++++.++++|+.+ +|.+|+| ||++ |++.+++.|||++++++..++.. + +...+
T Consensus 240 ~~~~~----------~~~l~~e~~rg~G~~l~~n~~G~Rf~f~~e~~~~~~~l~~rd~v~~ai~~~~~~~~~g~~g~~~v 309 (589)
T PRK08641 240 IPGDD----------KLRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFDVCVEQKLGINGENMV 309 (589)
T ss_pred ecCCC----------cceEeeeeeccCCcEEEECCCCCCcccccccCCcccccCChhHHHHHHHHHHHHhcCCCCCCceE
Confidence 75321 1357899999999865 5799999 6664 54557899999999999997733 2 12469
Q ss_pred EEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccc
Q 006532 386 LLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLA 464 (641)
Q Consensus 386 ~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~ 464 (641)
|+|+++.+.+.+.++||.+.+.+.. .|+|+.++||+|.|.+||+||||+||.+++|+|||||||||++ +|+||+|||+
T Consensus 310 ~ld~~~~~~e~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~h~~~GGi~vd~~~~t~I~GLyAaGE~~-~g~hGanrlg 388 (589)
T PRK08641 310 YLDLSHKDPKELDIKLGGILEIYEKFTGDDPRKVPMKIFPAVHYSMGGLWVDYDQMTNIPGLFAAGECD-YSYHGANRLG 388 (589)
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCceeeehHHheeCCCeEECCCCCeECCCEEECcccc-cCCCCCCccc
Confidence 9999999999999999998888887 5999999999999999999999999999999999999999997 6999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhccccccccccccc-ccccCCccccccchh-----hhhchHHHHHHHHHHHHhcCccc
Q 006532 465 SNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWT-RTVVPKSLGCNVMHN-----ILRRTKEVRKELQSIMWRYVGIV 538 (641)
Q Consensus 465 g~sl~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~m~~~~g~~ 538 (641)
||||++|+|||++||++|++|++............. ...... ....+.. ....+.+++++||++||+|+||+
T Consensus 389 gnsl~~~lv~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~ 466 (589)
T PRK08641 389 ANSLLSAIYGGMVAGPNAVEYIKGLGKSADDVSSSVFEQALKQ--EQEKFDNILSMDGTENAYVLHKELGEWMTDNVTVV 466 (589)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcccccccCCcchhhHHHHH--HHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCCEE
Confidence 999999999999999999998754211000000000 000000 0000000 01235678889999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCC
Q 006532 539 RSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRL 617 (641)
Q Consensus 539 R~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~ 617 (641)
|++++|++||++|++|++++.++...+ ....+.++.+++|++|||++|+++++|||+|+||||+|||+|||++|+++|+
T Consensus 467 R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~el~n~l~~a~~i~~aal~R~ESRG~H~R~D~P~~~d~~~~ 546 (589)
T PRK08641 467 RENDKLLETDEKIQELMERYKRISVNDTSRWSNQGASFTRQLWNMLELARVITIGALNRNESRGAHYKPEFPERNDENWL 546 (589)
T ss_pred ECHHHHHHHHHHHHHHHHHHHhcCcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCCccCchhhh
Confidence 999999999999999998876643211 1123457788899999999999999999999999999999999999988788
Q ss_pred Ceeec
Q 006532 618 PTIIL 622 (641)
Q Consensus 618 ~~~~~ 622 (641)
+++++
T Consensus 547 ~~~~~ 551 (589)
T PRK08641 547 KTTMA 551 (589)
T ss_pred ceEEE
Confidence 77753
No 13
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=3e-91 Score=777.95 Aligned_cols=526 Identities=37% Similarity=0.575 Sum_probs=450.1
Q ss_pred CccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccC--CCCCHHHHHHHHHHhccCCCCH
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDD 154 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~--~~d~~~~~~~d~~~~g~~~~~~ 154 (641)
..+.++||||||||.|||+||+.|++.| +|+||||....+|++.+++||+++..+ +.|+++.|+.|+++.+.+++++
T Consensus 8 ~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~ 87 (591)
T PRK07057 8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQ 87 (591)
T ss_pred cccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCH
Confidence 3456799999999999999999999999 999999999888999999999987665 5789999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccc-------cceeeccCCcHHHHHHHHHHHHHcCCCcEEE
Q 006532 155 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSH-------HRIVHAADMTGREIERALLEAVVSDPNISVF 227 (641)
Q Consensus 155 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~-------~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~ 227 (641)
++++.+++++++.++||+++|++|++..+|.+....+++|+. +|.++..+.+|..++..|.+.+.+ .|++++
T Consensus 88 ~~v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~-~gi~i~ 166 (591)
T PRK07057 88 DAIEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVA-AKTQFF 166 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHh-cCCEEE
Confidence 999999999999999999999999988888877777788754 688888888999999999998877 599999
Q ss_pred cceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeecccc
Q 006532 228 EHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEF 307 (641)
Q Consensus 228 ~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~ 307 (641)
+++.+++|+.+++| +|.||++.+..+|+...|+||+|||||||++++|..++++..++|||+.||+++||.+.||||
T Consensus 167 ~~~~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~me~ 243 (591)
T PRK07057 167 VEWMALDLIRDADG---DVLGVTALEMETGDVYILEAKTTLFATGGAGRIFAASTNAFINTGDGLGMAARAGIPLQDMEF 243 (591)
T ss_pred eCcEEEEEEEcCCC---eEEEEEEEEcCCCeEEEEECCeEEECCCCcccccCCcCCCCCcCcHHHHHHHHcCCCeeCccc
Confidence 99999999986556 899999988778888889999999999999999999999999999999999999999999999
Q ss_pred ccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCcccccccc-ccccCchhHHHHHHHHHHHhcCC----
Q 006532 308 VQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDE-RAELAPRDVVARSIDDQLKKRNE---- 382 (641)
Q Consensus 308 ~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~-~~~~~~r~~~~~~i~~~~~~~~~---- 382 (641)
+||||+.+... .+++++.++++|+++||.+|+|||++|++ ..++.+||++++++..++.++.+
T Consensus 244 ~q~~pt~~~~~------------~~l~~e~~rg~g~ilvn~~GeRF~~~~~~~~~el~~rd~v~~ai~~e~~~g~g~~~~ 311 (591)
T PRK07057 244 WQFHPTGVAGA------------GVLITEGVRGEGGILRNKDGERFMERYAPTLKDLAPRDFVSRSMDQEIKEGRGCGPN 311 (591)
T ss_pred ccccCCccCCC------------ceEEeecccCCceEEECCCCCCchhhcCccccccccHHHHHHHHHHHHHhcCCcCCC
Confidence 99999865421 46788889999999999999999999987 46899999999999999876432
Q ss_pred -CeEEEeCCCCChhHHHhhChhHHHHHHHc-CCCCCCCCeeEeeeeccccCceEeCCCCCc---------ccCCeeeccc
Q 006532 383 -KYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGET---------NVRGLYVAGE 451 (641)
Q Consensus 383 -~~v~lD~~~~~~~~~~~~~~~~~~~~~~~-G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T---------~ipGLyAaGe 451 (641)
.++|+|.++.+.+.+..++|++.+++.+. ++|+.++|+|+.|..||++|||.||.++|| +|||||||||
T Consensus 312 ~~~v~lD~~~~~~~~~~~~~~~i~e~~~~~~~~d~~~~pi~v~p~~h~t~GGi~vd~~g~~~~~~~~~g~~IpGLyAaGE 391 (591)
T PRK07057 312 GDHVLLDLTHLGAETIMKRLPSIREIALKFANVDCIKEPIPVVPTIHYQMGGIPTNIHGQVVGTSRDHKEPVNGFYAIGE 391 (591)
T ss_pred CCEEEEeCCCCCHHHHHHHccHHHHHHHHhcCCCCCCCCeeeehhHheeCCCeeECCCCcEeccccCCCCeeCCeEeCcc
Confidence 46999999998888888999999999887 699999999999999999999999999998 7999999999
Q ss_pred ccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhccc--ccccccccccccccCCccccccchhhhhchHHHHHHHHH
Q 006532 452 VACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTS--IDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQS 529 (641)
Q Consensus 452 ~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 529 (641)
++|+|+||+|||+||||++|+|||++||++|+++++... ..+... ...... ..............+.+++++||+
T Consensus 392 ~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~ 468 (591)
T PRK07057 392 CSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDHVKKQHEHKPLPAD-AADFSL--ARLAKLDKSTSGEYAQDVANDIRA 468 (591)
T ss_pred ccccCCCccccchhhHHHHHHHHHHHHHHHHHHHhhccCCCcchhhh-hhHHHH--HHHhhhhccccccCHHHHHHHHHH
Confidence 998899999999999999999999999999998864321 011000 000000 000000000011247788999999
Q ss_pred HHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhccCc-ccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCC
Q 006532 530 IMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGW-EQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDF 608 (641)
Q Consensus 530 ~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~ 608 (641)
+||+|+||+|++++|++||++|++|++++..+...+.. ..+.++++++|++|||++|+++++|||+|+||||+|||+||
T Consensus 469 ~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~ 548 (591)
T PRK07057 469 TMQKHAGVFRTQALLDEGVEQILALAERVENIHLKDKSKVFNTARVEALEVANLIEVARATMVSAAARKESRGAHAHSDY 548 (591)
T ss_pred HHHhcCCeEECHHHHHHHHHHHHHHHHHHHHhccCCccchhchhhHHHHHHHhHHHHHHHHHHHHHhCCCCccccCCCCC
Confidence 99999999999999999999999999887664321111 12335688999999999999999999999999999999999
Q ss_pred CCCccCCCCCeeec
Q 006532 609 PHVEENKRLPTIIL 622 (641)
Q Consensus 609 P~~d~~~~~~~~~~ 622 (641)
|++++++|.+++++
T Consensus 549 P~~~d~~~~~~~~~ 562 (591)
T PRK07057 549 EHRDDENWLKHTLW 562 (591)
T ss_pred CCCCchhhcceEEE
Confidence 99988877777654
No 14
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=2.4e-91 Score=779.76 Aligned_cols=521 Identities=34% Similarity=0.511 Sum_probs=450.2
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccC--CCCCHHHHHHHHHHhccCCCCHHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDDET 156 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~--~~d~~~~~~~d~~~~g~~~~~~~~ 156 (641)
+.++||||||||+|||+||+.|++.| +|+||||....+|++.+++||+++... +.|+++.|+.|+++.+.+++++++
T Consensus 10 ~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~l 89 (598)
T PRK09078 10 DHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDA 89 (598)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHH
Confidence 45799999999999999999999999 999999999888999999999987655 579999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCcc--------ccceeeccCCcHHHHHHHHHHHHHcCCCcEEEc
Q 006532 157 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS--------HHRIVHAADMTGREIERALLEAVVSDPNISVFE 228 (641)
Q Consensus 157 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~--------~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~ 228 (641)
++.+++++++.++||+++|++|+++.+|.+....+++|+ ++|+++..+.+|..++..|.+.+.+ .||+|++
T Consensus 90 v~~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~-~gi~i~~ 168 (598)
T PRK09078 90 IEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLK-HNAEFFI 168 (598)
T ss_pred HHHHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhh-cCCEEEE
Confidence 999999999999999999999999888887777778874 5788888888999999999999887 5999999
Q ss_pred ceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccc
Q 006532 229 HHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFV 308 (641)
Q Consensus 229 ~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~ 308 (641)
++.+++|+++++| +|+||++.+..+|+.+.|.|++|||||||++++|..++++..+||||+.||+++||.+.||||+
T Consensus 169 ~~~v~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~t~~~~~tGdGi~ma~~aGA~l~~me~~ 245 (598)
T PRK09078 169 EYFALDLIMDDGG---VCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRAYFSATSAHTCTGDGGGMVLRAGLPLQDMEFV 245 (598)
T ss_pred eEEEEEEEEcCCC---EEEEEEEEECCCCcEEEEEcCEEEECCCCCccccCccCCCCCcccHHHHHHHHcCCCccCCchh
Confidence 9999999987446 8999999887788888999999999999999999888999999999999999999999999999
Q ss_pred cccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC-----
Q 006532 309 QFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE----- 382 (641)
Q Consensus 309 q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~~~~r~~~~~~i~~~~~~~~~----- 382 (641)
||||+.+... .+++++.++++|+++||.+|+|||++|++. +++.+||++++++..++.++.+
T Consensus 246 q~~pt~~~~~------------~~l~~e~~rg~G~ilvN~~GeRF~~ey~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~ 313 (598)
T PRK09078 246 QFHPTGIYGA------------GCLITEGARGEGGYLTNSEGERFMERYAPSAKDLASRDVVSRAMTIEIREGRGVGKKK 313 (598)
T ss_pred eecccccCCC------------ceEEeecccCCceEEECCCCCCCchhcCccccccccchHHHHHHHHHHHhcCCCCCCC
Confidence 9999876421 457788899999999999999999999886 5899999999999999876532
Q ss_pred CeEEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCC----------cccCCeeeccc
Q 006532 383 KYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGE----------TNVRGLYVAGE 451 (641)
Q Consensus 383 ~~v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~----------T~ipGLyAaGe 451 (641)
..+|+|+++++.+.+.+++|.+.+.+.. .|+|+.++|++|.|..||++|||.||.++| |+|||||||||
T Consensus 314 ~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~pi~v~p~~h~t~GGi~vd~~~~v~~~~~~~~~t~I~GLyAaGE 393 (598)
T PRK09078 314 DHIFLHLDHLDPEVLHERLPGISESAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVLTKTGDNPDAVVPGLMAVGE 393 (598)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCcEEeecccEEcCCCcccCCCceeecccccccCCccCceeeccc
Confidence 4599999999999999999999888877 699999999999999999999999999987 48999999999
Q ss_pred ccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCccccccchh-----hhhchHHHHHH
Q 006532 452 VACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHN-----ILRRTKEVRKE 526 (641)
Q Consensus 452 ~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 526 (641)
|+|+|+||+|||+||+|++|+|||++||++|+++++....... .. .. .... ....+.. ....+.+++++
T Consensus 394 ~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~~~~~~~-~~--~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 467 (598)
T PRK09078 394 AACVSVHGANRLGSNSLIDLVVFGRAAALRAAEVIKPGAPHPP-LP--KD-ACDK--ALDRFDRLRHANGGTPTAELRLK 467 (598)
T ss_pred ccccCCcCcccccchhHHHHHHHHHHHHHHHHHhhhccCCCcc-cc--hh-hHHH--HHHHHHHhhhccCCCCHHHHHHH
Confidence 9988999999999999999999999999999988643211000 00 00 0000 0000000 01246788899
Q ss_pred HHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccc
Q 006532 527 LQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYM 605 (641)
Q Consensus 527 l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R 605 (641)
||++||+++||+|++++|++|+++|++|++++.++...+ ....++++++++|++||+++|+++++|||+|+||||+|||
T Consensus 468 l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~a~~~~~aal~R~ESRG~H~R 547 (598)
T PRK09078 468 MQRTMQEDAAVFRTGEVLEEGVEKISEVWAGLPDIKVTDRSLIWNSDLVETLELDNLMAQAVVTMESAENRKESRGAHAR 547 (598)
T ss_pred HHHHHhCCeeEEECHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccchhcc
Confidence 999999999999999999999999999998876542111 1123567889999999999999999999999999999999
Q ss_pred cCCCCCccCCCCCeeec
Q 006532 606 VDFPHVEENKRLPTIIL 622 (641)
Q Consensus 606 ~D~P~~d~~~~~~~~~~ 622 (641)
.|||++|+++|+++++.
T Consensus 548 ~D~P~~~d~~~~~~~~~ 564 (598)
T PRK09078 548 EDFPDRDDENWMKHTLA 564 (598)
T ss_pred CCCCccCccccccEEEE
Confidence 99999988778777753
No 15
>PRK09077 L-aspartate oxidase; Provisional
Probab=100.00 E-value=1e-90 Score=767.67 Aligned_cols=519 Identities=47% Similarity=0.742 Sum_probs=444.7
Q ss_pred cccccEEEECccHHHHHHHHHHHhcCCeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~ 159 (641)
+.++||||||+|.|||+||+.|++..+|+||||....+|+|.+++||+++..++.|+++.|+.|+++.+.+++++++++.
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~ 85 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEHRRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDAVRF 85 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHCCCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHHHHH
Confidence 46799999999999999999998744999999999888999999999998888889999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHcCCccccCCC--C--CcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEE
Q 006532 160 VCTEGPDRIRELIAIGASFDRGED--G--NLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDL 235 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~~~~--g--~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l 235 (641)
+++++++.++||+++|++|++..+ | .+....+++|+.+|+++..+.+|..+...|.+.+.+..||+|++++.+++|
T Consensus 86 ~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~~L 165 (536)
T PRK09077 86 IAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNAIDL 165 (536)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEeeee
Confidence 999999999999999999987654 3 466677899999999999899999999999998877669999999999999
Q ss_pred EecC-----CCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccc
Q 006532 236 LTTL-----DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQF 310 (641)
Q Consensus 236 ~~~~-----~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~ 310 (641)
+.++ ++ +|+||.+.+..+|+...|+|+.|||||||++++|..+++++.+||||+.||+++||.+.||||+||
T Consensus 166 i~~~~~~~~~g---~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~q~ 242 (536)
T PRK09077 166 ITSDKLGLPGR---RVVGAYVLNRNKERVETIRAKFVVLATGGASKVYLYTTNPDIASGDGIAMAWRAGCRVANMEFNQF 242 (536)
T ss_pred eecccccCCCC---EEEEEEEEECCCCcEEEEecCeEEECCCCCCCCCCCCcCCCCCCcHHHHHHHHcCCcCcCccceeE
Confidence 9763 25 899999988777888889999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEeCC
Q 006532 311 HPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDIS 390 (641)
Q Consensus 311 ~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~lD~~ 390 (641)
||+.+..++ ...+++++.++++|+++||.+|+|||++|++..+++|||+++++|..++++.+..++|+|++
T Consensus 243 ~pt~~~~~~---------~~~~l~~e~~rg~g~~lvn~~G~RF~~~~~~~~el~~rd~v~~ai~~~~~~~g~~~v~ld~~ 313 (536)
T PRK09077 243 HPTCLYHPQ---------ARSFLITEALRGEGAYLKLPDGTRFMPDFDERAELAPRDIVARAIDHEMKRLGADCVYLDIS 313 (536)
T ss_pred ecceecCCC---------CCceeecHHHcCCCCEEECCCCCCcccccCcccccCchhHHHHHHHHHHHhcCCCeEEEECC
Confidence 999874321 11567889999999999999999999999998899999999999999998755568999999
Q ss_pred CCChhHHHhhChhHHHHHHHcCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHH
Q 006532 391 HKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLE 470 (641)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~ 470 (641)
+.+.+.+.+++|++++.+.+.|+|+.++|++|.|..||++|||+||.+++|+|||||||||++|+|+||+|||+||||++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~g~d~~~~pi~v~p~~h~t~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~ 393 (536)
T PRK09077 314 HKPADFIRQHFPTIYERCLELGIDITKEPIPVVPAAHYTCGGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMASNSLLE 393 (536)
T ss_pred CCcHHHHHHHChHHHHHHHHhCcCCCCCceeeeeeeeEecCCeeECCCCccccCCEEecccccccccCCCccchhhhHHH
Confidence 99888888899999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCccccCHHHHHHHHHH
Q 006532 471 ALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWR 550 (641)
Q Consensus 471 a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~ 550 (641)
|+|||++||++|+++......+.. ........... . ..+ ..+...+++||++||+++||+|++++|++++++
T Consensus 394 ~~vfG~~Ag~~aa~~~~~~~~~~~-~~~~~~~~~~~----~-~~~--~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~ 465 (536)
T PRK09077 394 CLVYGRSAAEDILSRLPKAPMPPT-LPAWDESRVTD----S-DEE--VVIQHNWHELRLFMWDYVGIVRTTKRLERALHR 465 (536)
T ss_pred HHHHHHHHHHHHHHhhcccCcccc-cchhhhhhhhc----c-ccc--cchhHHHHHHHHHHHhCCCEEECHHHHHHHHHH
Confidence 999999999999887532110000 00000000000 0 000 113345579999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeeecC
Q 006532 551 IDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIILP 623 (641)
Q Consensus 551 l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~~ 623 (641)
|++|++++..... .+ ....+++|++|||++|+++++|||.|+||||+|||.|||++|+++.++.+..+
T Consensus 466 l~~l~~~~~~~~~--~~---~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~~~~~~~~~~~~ 533 (536)
T PRK09077 466 IRLLQQEIDEYYA--NF---RVSNNLLELRNLVQVAELIVRCAMERKESRGLHYTLDYPELLPEAGPTILSPP 533 (536)
T ss_pred HHHHHHHHHHHhh--hc---ccCHHHHHHHHHHHHHHHHHHHHHhCCCCccceecCCCcccccccCceEeecC
Confidence 9999877643211 01 11135689999999999999999999999999999999999988544333334
No 16
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=2.4e-90 Score=771.32 Aligned_cols=522 Identities=36% Similarity=0.557 Sum_probs=448.8
Q ss_pred ccccEEEECccHHHHHHHHHHHhcCCeEEEEecCCCCCccccccCceeeccC--CCCCHHHHHHHHHHhccCCCCHHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G~V~llek~~~~~g~s~~a~ggi~~~~~--~~d~~~~~~~d~~~~g~~~~~~~~~~ 158 (641)
.++||||||||+|||+||+.|++..+|+||||....+|+|.+++||+++... +.|+++.|+.|+++.+.+++++++++
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~~v~ 83 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPRARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQDAAE 83 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhCCCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHHHHH
Confidence 4689999999999999999998644999999999888889999999987665 57899999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccc-------cceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceE
Q 006532 159 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSH-------HRIVHAADMTGREIERALLEAVVSDPNISVFEHHF 231 (641)
Q Consensus 159 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~-------~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~ 231 (641)
.+++++++.++||+++|++|++..+|.+....+++|+. +|.++..+.+|..++..|.+.+++ .||++++++.
T Consensus 84 ~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~~-~gv~i~~~~~ 162 (583)
T PRK08205 84 IMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCVK-HGVEFFNEFY 162 (583)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHHh-cCCEEEeCCE
Confidence 99999999999999999999988888877777888854 788888888999999999998887 5999999999
Q ss_pred EEEEEecCC---CCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccc
Q 006532 232 AIDLLTTLD---GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFV 308 (641)
Q Consensus 232 v~~l~~~~~---g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~ 308 (641)
|++|+++++ | +|+|+++.+..+|+.+.|+||+|||||||++++|..+++++.+||||+.||+++||.+.+|||+
T Consensus 163 v~~Li~~~~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~ 239 (583)
T PRK08205 163 VLDLLLTETPSGP---VAAGVVAYELATGEIHVFHAKAVVFATGGSGRVYKTTSNAHTLTGDGMGIVFRKGLPLEDMEFH 239 (583)
T ss_pred EEEEEecCCccCC---cEEEEEEEEcCCCeEEEEEeCeEEECCCCCcccCCCcCCCCCCCcHHHHHHHHcCCCccCccce
Confidence 999998643 6 8999999877788888899999999999999999989999999999999999999999999999
Q ss_pred cccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCcccccccc-ccccCchhHHHHHHHHHHHhcCC-----
Q 006532 309 QFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDE-RAELAPRDVVARSIDDQLKKRNE----- 382 (641)
Q Consensus 309 q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~-~~~~~~r~~~~~~i~~~~~~~~~----- 382 (641)
||||+.+... .+++++.++++|++++|.+|+|||++|++ ..++.+|+++++++..++.++.+
T Consensus 240 q~~Pt~~~~~------------~~l~~e~~rg~g~ilvn~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~ 307 (583)
T PRK08205 240 QFHPTGLAGL------------GILISEAARGEGGILRNAEGERFMERYAPTIKDLAPRDIVARSMVLEVREGRGAGPNK 307 (583)
T ss_pred EEecceecCC------------ceEeeecccCCceEEECCCCCCCccccCccccccccHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999876431 46788889999999999999999999987 46899999999999999876432
Q ss_pred CeEEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCC------cccCCeeecccccCC
Q 006532 383 KYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACT 455 (641)
Q Consensus 383 ~~v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~------T~ipGLyAaGe~a~~ 455 (641)
.++|+|.++.+.+.+..++|.+.+.++. .|+||.++++++.|..||++|||.||.+++ |+|||||||||++|+
T Consensus 308 ~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~d~~~~~i~v~p~~h~t~GGi~id~~~~v~~~~~t~IpGLyAaGE~a~~ 387 (583)
T PRK08205 308 DYVYLDLTHLGEEVLEAKLPDITEFARTYLGVDPVKEPVPVYPTAHYAMGGIPTTVDGEVLRDNTTVVPGLYAAGECACV 387 (583)
T ss_pred CEEEEecccCChHHHHHHcchHHHHHHHHcCCCcCCCceEEEeeeeEECCCeeECCCceEecCCCCCcCCeeeccccccC
Confidence 4699999999999999999999888887 799999999999999999999999999998 689999999999978
Q ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHHhhhccc-cccccccc-ccccccCCccccccchhhhhchHHHHHHHHHHHHh
Q 006532 456 GLHGANRLASNSLLEALVFARRAVQPSIDHKKSTS-IDLSASNW-WTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWR 533 (641)
Q Consensus 456 g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 533 (641)
|+||+|||+||+|++|+|||++||++|+++++... .+...... ...... ..... ......+.+++++||++||+
T Consensus 388 g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~lq~~m~~ 463 (583)
T PRK08205 388 SVHGANRLGTNSLLDINVFGRRAGIAAAEYARGADFVDLPENPEAMVVEWV-EDLLS---EHGNERVADIRGELQQSMDN 463 (583)
T ss_pred CCCCCcCCchhhHHHHHHHHHHHHHHHHHHhhccCccCCchhhHHHHHHHH-Hhhhc---cCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999875321 11110000 000000 00000 00013467789999999999
Q ss_pred cCccccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCc
Q 006532 534 YVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVE 612 (641)
Q Consensus 534 ~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d 612 (641)
++||+|++++|++||++|++|++++.++...+ ....++++++++|++|||++|+++++|||.|+||||+|||.|||++|
T Consensus 464 ~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~p~~~ 543 (583)
T PRK08205 464 NASVFRTEETLKQALTDIHALKERYKRITVQDKGKRFNTDLLEAIELGFLLDLAEVTVVGALNRKESRGGHAREDYPNRD 543 (583)
T ss_pred cCCEEECHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHhHHHHHHHHHHHHHhCcCCcccccCCCCCCcC
Confidence 99999999999999999999998876643221 12345788999999999999999999999999999999999999999
Q ss_pred cCCCCCeeec
Q 006532 613 ENKRLPTIIL 622 (641)
Q Consensus 613 ~~~~~~~~~~ 622 (641)
+++|++++++
T Consensus 544 d~~~~~~~~~ 553 (583)
T PRK08205 544 DVNYMKHTMA 553 (583)
T ss_pred ccccceEEEE
Confidence 8888887764
No 17
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=2.8e-90 Score=774.22 Aligned_cols=543 Identities=34% Similarity=0.466 Sum_probs=455.5
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccC---CCCCHHHHHHHHHHhccCCCCHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC---PSDSVESHMQDTIVAGAYLCDDE 155 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~---~~d~~~~~~~d~~~~g~~~~~~~ 155 (641)
+.++||||||+|+|||+||+.|++.| +|+||||....+|+|.+++||+++..+ +.|+++.|+.|+++.+.++++++
T Consensus 6 ~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~~ 85 (626)
T PRK07803 6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNWR 85 (626)
T ss_pred ceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcHH
Confidence 45799999999999999999999999 999999999888899999999987754 46899999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCC-------C-----
Q 006532 156 TVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDP-------N----- 223 (641)
Q Consensus 156 ~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~-------g----- 223 (641)
+++.+++++++.++||+++|++|++..+|.+....+++|+++|+++..+.+|..++..|.+.+.+.. |
T Consensus 86 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~~ 165 (626)
T PRK07803 86 MAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEAR 165 (626)
T ss_pred HHHHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccCCcCc
Confidence 9999999999999999999999998888888878889999999999888899999999999887632 5
Q ss_pred cEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeee
Q 006532 224 ISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVIS 303 (641)
Q Consensus 224 v~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~ 303 (641)
|++++++.|++|+.+ ++ +|.|+.+.+..+|+.+.|.|++|||||||++++|+.++++..++|||+.||+++||.+.
T Consensus 166 v~i~~~~~v~~L~~~-~g---~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~ 241 (626)
T PRK07803 166 IKVFAECTITELLKD-GG---RIAGAFGYWRESGRFVLFEAPAVVLATGGIGKSFKVTSNSWEYTGDGHALALRAGATLI 241 (626)
T ss_pred eEEEeCCEEEEEEEE-CC---EEEEEEEEECCCCeEEEEEcCeEEECCCcccCCCCCcCCCCCcCcHHHHHHHHcCCcEe
Confidence 999999999999986 56 89999988877888888999999999999999999999999999999999999999999
Q ss_pred ccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccc-----------------------
Q 006532 304 NMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER----------------------- 360 (641)
Q Consensus 304 ~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~----------------------- 360 (641)
+|||+||||+.+..+. . ...++++++++++|++++|.+|+|||++|.+.
T Consensus 242 ~me~~q~~Pt~~~~~~-----~---~~~~li~e~~rg~g~ilvN~~G~RF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (626)
T PRK07803 242 NMEFVQFHPTGMVWPP-----S---VKGILVTEGVRGDGGVLKNSEGKRFMFDYIPDVFKGQYAETEEEADRWYKDNDNN 313 (626)
T ss_pred CCcceeecccccccCC-----C---cCceEEeeeccCCceEEECCCCCCccccccchhhhhhccccccchhhhhhccccc
Confidence 9999999998764221 0 12578899999999999999999999988754
Q ss_pred ---cccCchhHHHHHHHHHHHhcCC---CeEEEeC-CCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCc
Q 006532 361 ---AELAPRDVVARSIDDQLKKRNE---KYVLLDI-SHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGG 432 (641)
Q Consensus 361 ---~~~~~r~~~~~~i~~~~~~~~~---~~v~lD~-~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GG 432 (641)
.++.|||++++++..++.++.+ +.+|+|+ ++++++.+.+++|.++..+.+ .|+|+.++||++.|.+||++||
T Consensus 314 ~~~~~l~prd~v~~ai~~e~~~g~g~~~~~v~ldla~~~~~~~l~~~~~~~~~~~~~~~g~d~~~~~i~v~P~~h~~~GG 393 (626)
T PRK07803 314 RRPPELLPRDEVARAINSEVKAGRGSPHGGVYLDIASRLPAEEIKRRLPSMYHQFKELADVDITKEPMEVGPTCHYVMGG 393 (626)
T ss_pred ccccccccHHHHHHHHHHHHHhcCCCCCCcEEEEccccCCHHHHHHHhHHHHHHHHHHcCCCCCCCceeeeeecceecCC
Confidence 5788999999999999987642 3499999 789988999999997777766 6999999999999999999999
Q ss_pred eEeCCCC-CcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhccccccc-ccccccccccCCcccc
Q 006532 433 VRAGLQG-ETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLS-ASNWWTRTVVPKSLGC 510 (641)
Q Consensus 433 I~vD~~~-~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 510 (641)
|+||.++ +|+||||||||||+ +|+||+|||+||||++|+|||++||++|+++++....... ......... . .. .
T Consensus 394 i~vd~~~~~t~IpGLYAaGE~a-gg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~-~-~~-~ 469 (626)
T PRK07803 394 VEVDPDTGAATVPGLFAAGECA-GGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVRGLGSRPAVSEEAVDAAA-R-EA-L 469 (626)
T ss_pred EEEcCCCCeeecCCeeEccccc-cccCcCccccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCChHHHHHHH-H-HH-H
Confidence 9999986 59999999999997 6999999999999999999999999999998753211000 000000000 0 00 0
Q ss_pred ccchhh--hhchHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhccCcccccchHHHHHHHHHHHHHHH
Q 006532 511 NVMHNI--LRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKL 588 (641)
Q Consensus 511 ~~~~~~--~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~ 588 (641)
...... ...+.+++++||++||+++||+|++++|++||.+|++|++++.++........+.++.+++|++|||++|++
T Consensus 470 ~~~~~~~~~~~~~~~~~~lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~ 549 (626)
T PRK07803 470 APFERPAGAENPYTLHAELQQTMNDLVGIIRKEDEIEQALEKLAELKERAANVSVEGHRQYNPGWHLALDLRNMLLVSEC 549 (626)
T ss_pred hhhhcccCCCCHHHHHHHHHHHHHhhceEEecHHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHhHHHHHHH
Confidence 000000 134677899999999999999999999999999999999887664322111123345688999999999999
Q ss_pred HHHHHHhcccCcccccccCCCCCccCCCCCeeecC---CCccccccccccccC
Q 006532 589 VVSSALARHESRGLHYMVDFPHVEENKRLPTIILP---SLVNCTWSSRQLHKL 638 (641)
Q Consensus 589 ~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~ 638 (641)
+++|||+|+||||+|||.|||++|++|++++++.. ++.+....+.|+..+
T Consensus 550 ~~~aal~R~ESRG~H~R~D~P~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 602 (626)
T PRK07803 550 VARAALERTESRGGHTRDDHPGMDPEWRRINLVCRADPVGGHVTVTRQPQPPM 602 (626)
T ss_pred HHHHHHhCCCCcccEeCCCCCccChhhhceEEEEecCCCCCceEEEEccCCCc
Confidence 99999999999999999999999977665555443 334666566655544
No 18
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=2.4e-90 Score=772.03 Aligned_cols=526 Identities=37% Similarity=0.543 Sum_probs=452.3
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC----CeEEEEecCCCCCccccccCceeeccCC--CCCHHHHHHHHHHhccCCC
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG----TVAVITKAEPHESNTNYAQGGVSAVLCP--SDSVESHMQDTIVAGAYLC 152 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G----~V~llek~~~~~g~s~~a~ggi~~~~~~--~d~~~~~~~d~~~~g~~~~ 152 (641)
...++||||||||+|||+||+.|++.| +|+||||....+|++.+++||+++...+ .|+++.|+.|+++.+.+++
T Consensus 2 ~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~ 81 (577)
T PRK06069 2 EVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLA 81 (577)
T ss_pred CceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccC
Confidence 345799999999999999999999985 8999999999889999999999877654 6999999999999999999
Q ss_pred CHHHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEE
Q 006532 153 DDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFA 232 (641)
Q Consensus 153 ~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v 232 (641)
++++++.+++++++.++||+++|++|+++++|.+....+++|+++|+.+..+.+|..++..|.+.+.+..||++++++.+
T Consensus 82 d~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~v 161 (577)
T PRK06069 82 DQDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFV 161 (577)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCEE
Confidence 99999999999999999999999999998889887788899999999999898999999999998876469999999999
Q ss_pred EEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccc
Q 006532 233 IDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHP 312 (641)
Q Consensus 233 ~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p 312 (641)
++|+.+ ++ +|+||++.+..+|+...|+|+.|||||||++++|..++++..++|||+.||+++||.+.||||+||||
T Consensus 162 ~~Li~~-~g---~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~~~~~~~~~tGdGi~mA~~aGa~l~~~e~~q~~p 237 (577)
T PRK06069 162 TSLIVE-NG---VFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRLYGFTTYAHSVTGDGLAIAYRAGIPLKDMEFVQFHP 237 (577)
T ss_pred EEEEEE-CC---EEEEEEEEEcCCCeEEEEECCcEEEcCchhcccCCCcCCCCCcCcHHHHHHHHcCCccCCCcceeEee
Confidence 999986 56 89999998877888778999999999999999999888888999999999999999999999999999
Q ss_pred eeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC-------Ce
Q 006532 313 TALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE-------KY 384 (641)
Q Consensus 313 ~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~~~~r~~~~~~i~~~~~~~~~-------~~ 384 (641)
+.+... .+++++.++++|+++||.+|+|||++|+|. .++.+|+++++++.+++.++++ .+
T Consensus 238 t~~~~~------------g~l~~e~~~g~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~g~g~~~~~g~~~ 305 (577)
T PRK06069 238 TGLVPS------------GILITEAARGEGGYLINKEGERFMKRYAPQKMELAPRDVVSRAIMTEIMEGRGFKHESGLCY 305 (577)
T ss_pred eeeCCC------------CcEEEeeccCCCeEEECCCCCCcccccCccccccCCccHHHHHHHHHHHhcCCccCCCCceE
Confidence 877532 357788899999999999999999999874 6899999999999999876532 35
Q ss_pred EEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCCcc------cCCeeecccccCCCC
Q 006532 385 VLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGETN------VRGLYVAGEVACTGL 457 (641)
Q Consensus 385 v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~------ipGLyAaGe~a~~g~ 457 (641)
+|+|.++.+.+.+.+++|++.+++.+ .|+|+.+++++|.|..||++|||+||.++||+ |||||||||++|+|+
T Consensus 306 v~ld~~~~~~~~~~~~~~~i~~~~~~~~g~D~~~~~i~v~p~~h~t~GGi~vd~~~~t~~~~g~~I~GLyAaGE~a~~g~ 385 (577)
T PRK06069 306 VGLDLRHLGEEKINERLPLIREIAKKYAGIDPVTEPIPVRPAAHYTMGGIHTDVYGRVLTADGEWVRGLWAAGEAAAVSV 385 (577)
T ss_pred EEEecccCCHHHHHHHhhHHHHHHHHHcCCCCCCCceeeeeccceeCCCceECCCCcCcCCCCCEeCCeEeccccccccc
Confidence 99999999888888999999999988 79999999999999999999999999999998 999999999997799
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHHHHhhhccc-ccccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCc
Q 006532 458 HGANRLASNSLLEALVFARRAVQPSIDHKKSTS-IDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVG 536 (641)
Q Consensus 458 ~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g 536 (641)
||+||++||||++|+|||++||++|++++++.. ................ ............+.+++++||++||+|+|
T Consensus 386 hGanrlggnsl~~~~v~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~m~~~~g 464 (577)
T PRK06069 386 HGANRLGSNSTAECLVWGRIAGEQAAEYALKRPAPSSPVEKLAEKEEKRI-FDKLLKKEGGEPSYEIRRELNDIMDKNFG 464 (577)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHhhccCCCCCcchhhhhHHHHHH-HhhhhhccCCCcHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999875421 1110000000000000 00000000112467888999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhccC-cccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCC
Q 006532 537 IVRSTTSLQTAEWRIDELEAEWETYLFEHG-WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENK 615 (641)
Q Consensus 537 ~~R~~~~L~~al~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~ 615 (641)
|+|++++|++||++|++|++++.++...+. ...++++++++|++||+++|+++++|||.|+||||+|||+|||++|+++
T Consensus 465 i~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~a~~~~~aal~R~ESRG~H~R~D~P~~~~~~ 544 (577)
T PRK06069 465 IFRDESGLAEALKKIKKLRERYKNVRIEDKSRIYNTDLKDALELDGMLDLAEVVAIGALLRTESRGAHYRLDYPKRDDEN 544 (577)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHhCCCCccceecCCCCccCchh
Confidence 999999999999999999988766432111 1235788999999999999999999999999999999999999998877
Q ss_pred CCCeee
Q 006532 616 RLPTII 621 (641)
Q Consensus 616 ~~~~~~ 621 (641)
|.++++
T Consensus 545 ~~~~~~ 550 (577)
T PRK06069 545 WLKHTL 550 (577)
T ss_pred hhceEE
Confidence 777654
No 19
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=100.00 E-value=2e-90 Score=771.18 Aligned_cols=524 Identities=27% Similarity=0.371 Sum_probs=442.4
Q ss_pred EEEECccHHHHHHHHHHHhcC-CeEEEEecC-CCCCccccccCceeeccC---CCCCHHHHHHHHHHhccCCCCHHHHHH
Q 006532 85 FSVIGSGVAGLCYALEVAKHG-TVAVITKAE-PHESNTNYAQGGVSAVLC---PSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 85 VlVIGgG~AGl~AA~~aa~~G-~V~llek~~-~~~g~s~~a~ggi~~~~~---~~d~~~~~~~d~~~~g~~~~~~~~~~~ 159 (641)
|||||+|+|||+||+.|++.| +|+||||.. ..+|++.+++||+++..+ ..|+++.|+.|+++.+.+++++++++.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g~s~~a~Ggi~a~~~~~~~~ds~e~~~~d~~~~g~~~~d~~lv~~ 80 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSPWRHFDDTVKGGDFRARESPVKR 80 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCccchhhhhhhhhhcccCCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 799999999999999999999 999999998 556788889998876543 578999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcC---CCcEEEcceEEEEEE
Q 006532 160 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSD---PNISVFEHHFAIDLL 236 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~---~gv~i~~~~~v~~l~ 236 (641)
+++++++.++||+++|++|.++.+|.+....+++|+++|+++..+.+|..++..|.+.+++. .||++++++.+++|+
T Consensus 81 l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li 160 (603)
T TIGR01811 81 LAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQVSRTAYARGQTGQQLLLALDSALRRQIAAGLVEKYEGWEMLDII 160 (603)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCCCccccccccCcccCcceecCCCChhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEE
Confidence 99999999999999999999888887777778999999999888888999988887766542 489999999999999
Q ss_pred ecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeec
Q 006532 237 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALA 316 (641)
Q Consensus 237 ~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~ 316 (641)
++++| +|+||++.+..+|+...|.||.|||||||++++|..++++..+||||+.||+++||.+.||||+||||+.+.
T Consensus 161 ~dd~g---rV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~~~~~t~~~~~tGdGi~mA~~aGa~l~~me~vq~~Pt~~~ 237 (603)
T TIGR01811 161 VVDGN---RARGIIARNLVTGEIETHSADAVILATGGYGNVFGKSTNAMNSNASAAWRAYEQGAYFANPEFIQIHPTAIP 237 (603)
T ss_pred EcCCC---EEEEEEEEECCCCcEEEEEcCEEEECCCCCcCcCCccCCCCCcCcHHHHHHHHcCCCCcCCcceEEEeeeec
Confidence 87556 899999988667887889999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCCCCCCCCCccceeeccccCCCcEEEeC------------CCCc--cccc-cccccccCchhHHHHHHHHHHHhcC
Q 006532 317 DEGLPIKPKKTRENSFLITEAVRGDGGILYNL------------GMER--FMPL-YDERAELAPRDVVARSIDDQLKKRN 381 (641)
Q Consensus 317 ~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~------------~G~r--f~~~-~~~~~~~~~r~~~~~~i~~~~~~~~ 381 (641)
..|... ...++++++++++|++++|. +|+| ||.+ |++.++++|||+++++|+.++++++
T Consensus 238 ~~g~~~------~~~~li~ea~rgeg~ilvn~~~~~~~~~~~~~~g~r~~f~~~~~~~~~~la~rd~vs~ai~~~~~~g~ 311 (603)
T TIGR01811 238 VDGTWQ------SKLRLMSESLRNDGRIWTPKEKNDNRDPNTIPEDKRDYFLERRYPAFGNLVPRDIASRAIFQVCDAGK 311 (603)
T ss_pred CCCccc------ccceEeeeeeccCCcEEECccccccccccccccCchhhhhhhhcccccccCchHHHHHHHHHHHHhcC
Confidence 432100 01367899999999999999 9999 8864 5567899999999999999998753
Q ss_pred -----CCeEEEeCCCCCh----hHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeeccc
Q 006532 382 -----EKYVLLDISHKPT----EKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGE 451 (641)
Q Consensus 382 -----~~~v~lD~~~~~~----~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe 451 (641)
+.+||||+++.+. +.+.++||.+.+.+.+ .|+|+.++||||.|++||+||||+||.+++|+|||||||||
T Consensus 312 g~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~i~v~p~~H~~~gG~~~d~~~~t~i~gL~a~Ge 391 (603)
T TIGR01811 312 GVGPGENAVYLDFSDADERLGRKEIDAKYGNLFEMYEKFTGDDPYKVPMRIFPAVHYTMGGLWVDYDQMTNIPGLFAAGE 391 (603)
T ss_pred CcCCCCCeEEEEcCCCcccccHHHHHHHhHHHHHHHHHhcCCCccCCeeeeecccceeCCCeeECCCCcccCCCEEECcc
Confidence 2469999999987 7789999999999988 69999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcccc---ccccc-ccccccccCCccccccchhh-----hhchHH
Q 006532 452 VACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSI---DLSAS-NWWTRTVVPKSLGCNVMHNI-----LRRTKE 522 (641)
Q Consensus 452 ~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 522 (641)
|+ +|+||+|||+||||++|+|||++||++|++|++.... +.... ..... .... ...++..+ ...+.+
T Consensus 392 ~~-~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~ 467 (603)
T TIGR01811 392 CD-FSQHGANRLGANSLLSAIADGYFALPFTIPNYLGPELSSEDMPEDAPEFQA-ALAE--EQERFDRLLKMRGDENPYY 467 (603)
T ss_pred cc-cCcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhh-HHHH--HHHHHHHHhhccCCCCHHH
Confidence 97 6999999999999999999999999999998643210 00000 00000 0000 00000000 124678
Q ss_pred HHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhh-cc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 006532 523 VRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLF-EH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESR 600 (641)
Q Consensus 523 ~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~-~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESR 600 (641)
++++||++||+++||+|++++|++||++|++|++++.+.+. .+ ....+.++++++|++|||++|+++++|||+|+|||
T Consensus 468 ~~~~lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~n~l~~a~~i~~aal~R~ESR 547 (603)
T TIGR01811 468 LHRELGEIMTENCGVSRNNEKLLKTDEKIRELRERFWKNIDIPGTTKESNQVLEFARRVADYLELAELMCLDALNRNESC 547 (603)
T ss_pred HHHHHHHHHHcCeeEEECHHHHHHHHHHHHHHHHHHHHhcccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 89999999999999999999999999999999988754221 11 11234577889999999999999999999999999
Q ss_pred ccccccCCC------CCccCCCCCeee
Q 006532 601 GLHYMVDFP------HVEENKRLPTII 621 (641)
Q Consensus 601 G~h~R~D~P------~~d~~~~~~~~~ 621 (641)
|+|||+||| ++||++|+++++
T Consensus 548 G~H~R~D~P~~~~~~~~~d~~~~~~~~ 574 (603)
T TIGR01811 548 GAHFRPEFPTPDGEAERNDEEFLKVTA 574 (603)
T ss_pred cccccccCCCccccccCChhhhheeEE
Confidence 999999999 777777777765
No 20
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=4.6e-90 Score=768.75 Aligned_cols=522 Identities=34% Similarity=0.556 Sum_probs=446.5
Q ss_pred ccccEEEECccHHHHHHHHHHHhc--C-CeEEEEecCCCCCccccccCceeecc---CCCCCHHHHHHHHHHhccCCCCH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNTNYAQGGVSAVL---CPSDSVESHMQDTIVAGAYLCDD 154 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~--G-~V~llek~~~~~g~s~~a~ggi~~~~---~~~d~~~~~~~d~~~~g~~~~~~ 154 (641)
.++||||||||+|||+||+.|++. | +|+||||....+|++.+++||+.+.. .+.|+++.|+.|+++.+.+++++
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~ 81 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQ 81 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCH
Confidence 468999999999999999999986 5 89999999888888889999987665 35689999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEE
Q 006532 155 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 234 (641)
Q Consensus 155 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~ 234 (641)
++++.+++++++.++||+++|++|++.++|.+....+++|+++|.++..+.+|..++..|.+.+++ .||++++++.|++
T Consensus 82 ~~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~-~gi~i~~~t~v~~ 160 (575)
T PRK05945 82 DAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRR-YGVTIYDEWYVMR 160 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhh-CCCEEEeCcEEEE
Confidence 999999999999999999999999998888877778899999999999999999999999999987 5999999999999
Q ss_pred EEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeecccccccccee
Q 006532 235 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 314 (641)
Q Consensus 235 l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~ 314 (641)
|+.+ ++ +|.|+++.+..+|+...|+|++|||||||++++|..++++..++|||+.||+++|+.+.+|||+||||+.
T Consensus 161 L~~~-~g---~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~~me~~qf~pt~ 236 (575)
T PRK05945 161 LILE-DN---QAKGVVMYHIADGRLEVVRAKAVMFATGGYGRVFNTTSNDYASTGDGLAMTAIAGLPLEDMEFVQFHPTG 236 (575)
T ss_pred EEEE-CC---EEEEEEEEEcCCCeEEEEECCEEEECCCCCcCCCCCCCCCCCCccHHHHHHHHcCCCccCCcceEEeeee
Confidence 9986 66 8999998877788877899999999999999999988999999999999999999999999999999987
Q ss_pred ecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC---------Ce
Q 006532 315 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE---------KY 384 (641)
Q Consensus 315 ~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~~~~r~~~~~~i~~~~~~~~~---------~~ 384 (641)
+... .+++++.++++|+++||.+|+|||++|+|. .++.+||++++++.+++.++++ ..
T Consensus 237 ~~~~------------~~l~~~~~rg~g~~lvn~~G~RF~~~y~~~~~el~~rd~v~~ai~~~~~~g~g~~~~~~~~~~~ 304 (575)
T PRK05945 237 LYPV------------GVLISEAVRGEGAYLINSEGDRFMADYAPSRMELAPRDITSRAITLEIRAGRGINPDGSAGGPF 304 (575)
T ss_pred ecCC------------CeEEeeecccCceEEECCCCCCcccccCccccccCchhHHHHHHHHHHHhcCCCCCcccCCCCE
Confidence 6421 457788889999999999999999999885 5899999999999999876432 35
Q ss_pred EEEeCCCCChhHHHhhChhHHHHH-HHcCCCCCCCCeeEeeeeccccCceEeCCCCCc------ccCCeeecccccCCCC
Q 006532 385 VLLDISHKPTEKILSHFPNIAAEC-LKYGLDITSQPIPVVPAAHYMCGGVRAGLQGET------NVRGLYVAGEVACTGL 457 (641)
Q Consensus 385 v~lD~~~~~~~~~~~~~~~~~~~~-~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T------~ipGLyAaGe~a~~g~ 457 (641)
+|+|+++.+.+.+.+++|.+.+.+ ...|+|+.+++++|.|..|+++|||+||.+++| +|||||||||++|+|+
T Consensus 305 v~ld~~~~~~~~~~~~~~~~~~~l~~~~gid~~~~~i~v~p~~h~t~GGi~vd~~~~~~~~~~t~I~GLyAaGE~a~~g~ 384 (575)
T PRK05945 305 VYLDLRHMGKEKIMSRVPFCWEEAHRLVGVDAVTEPMPVRPTVHYCMGGIPVNTDGRVRRSADGLVEGFFAAGECACVSV 384 (575)
T ss_pred EEEECCCCCHHHHHHHhHHHHHHHHHHhCcCCCCceEEeeccceecCCCeeECCCceeccCCCCccCCeEeeeccccccc
Confidence 999999998887888888655444 458999999999999999999999999999986 7999999999998899
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHHHHhhhcccc-cccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCc
Q 006532 458 HGANRLASNSLLEALVFARRAVQPSIDHKKSTSI-DLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVG 536 (641)
Q Consensus 458 ~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g 536 (641)
||+|||+||+|++|+|||++||++|+++++.... +.+......... ..............+.+++++||++||+|+|
T Consensus 385 hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g 462 (575)
T PRK05945 385 HGANRLGSNSLLECVVYGRRTGAAIAEYVQGRKLPEVDEQRYLKEAK--QRIQALLDQSGTYRINQLRQQFQDCMTDHCG 462 (575)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHH--HHHhhhhccccccChHHHHHHHHHHHHcCcc
Confidence 9999999999999999999999999998753211 110000000000 0000000000112467889999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCC
Q 006532 537 IVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENK 615 (641)
Q Consensus 537 ~~R~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~ 615 (641)
|+|++++|++|+++|++|++++.++...+ ....++++++++|++|||++|+++++|||+|+||||+|||.|||++|+++
T Consensus 463 i~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~ 542 (575)
T PRK05945 463 VFRTEEIMQEGLEKIQQLKQQYEQIYLDDKGKCWNTELIEALELRSLMVVGEIILTSALNRQESRGAHSREDYPQRDDQN 542 (575)
T ss_pred EEECHHHHHHHHHHHHHHHHHHHhccccccccccChhHHHHHHHHhHHHHHHHHHHHHHhCCCcccccccCCCCcCCchh
Confidence 99999999999999999998877643221 12235788999999999999999999999999999999999999999887
Q ss_pred CCCeee
Q 006532 616 RLPTII 621 (641)
Q Consensus 616 ~~~~~~ 621 (641)
|+++++
T Consensus 543 ~~~~~~ 548 (575)
T PRK05945 543 FLKHTL 548 (575)
T ss_pred hhceEE
Confidence 887765
No 21
>PRK07804 L-aspartate oxidase; Provisional
Probab=100.00 E-value=9e-89 Score=752.23 Aligned_cols=507 Identities=45% Similarity=0.653 Sum_probs=440.8
Q ss_pred CccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHH
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDET 156 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~ 156 (641)
.++.++||||||+|.|||+||+.|++.| +|+||||....+|+|.+++||+++..++.|+++.|+.|+++.+.+++++++
T Consensus 12 ~~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~ 91 (541)
T PRK07804 12 GWRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDA 91 (541)
T ss_pred ccccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHH
Confidence 4567899999999999999999999999 999999999888999999999998888899999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeec-cCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEE
Q 006532 157 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHA-ADMTGREIERALLEAVVSDPNISVFEHHFAIDL 235 (641)
Q Consensus 157 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~-~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l 235 (641)
++.+++++++.++||+++|++|+++.+|.+....+++|+.+|+++. .+.+|..+...|.+.+++ .+|++++++.|++|
T Consensus 92 v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~-~gV~i~~~~~v~~L 170 (541)
T PRK07804 92 VRSLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRA-DPLDIREHALALDL 170 (541)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHh-CCCEEEECeEeeee
Confidence 9999999999999999999999998889888888899999998887 367899999999999987 48999999999999
Q ss_pred EecCCCCCceEEEEEEEecC---CCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccc
Q 006532 236 LTTLDGPDAVCHGVDTLNVE---TQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHP 312 (641)
Q Consensus 236 ~~~~~g~~~~v~Gv~~~~~~---~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p 312 (641)
++++++ +|+|+.+.+.. ++....|+||.||+||||++.+|..+++++.+||||+.||+++|+.+.+|||+||||
T Consensus 171 i~~~~g---~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~~me~~q~~p 247 (541)
T PRK07804 171 LTDGTG---AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQLYAATTNPAGSTGDGVALALRAGAAVSDLEFVQFHP 247 (541)
T ss_pred EEcCCC---eEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCCCCCccCCCCcchHHHHHHHHcCCCCcCCcceeEec
Confidence 987556 89999887431 233467999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEeCCCC
Q 006532 313 TALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHK 392 (641)
Q Consensus 313 ~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~lD~~~~ 392 (641)
+.+..... .....+++++.++++|++++|.+|+|||++|++..|+.|||++++++..++.+.+..++|+|.++
T Consensus 248 t~~~~~~~------~~~~~~l~~~~~r~~g~~lvn~~G~RF~~~~~~~~E~a~rd~v~~ai~~~~~~~g~~~v~lD~~~- 320 (541)
T PRK07804 248 TVLFLGPA------AGGQRPLISEAVRGEGAILVDAQGNRFMAGVHPLADLAPRDVVAKAIDRRMKATGDDHVYLDARG- 320 (541)
T ss_pred ceecCCcc------cccccceechhhcCCceEEECCCCCCCccccCcccccCcHHHHHHHHHHHHHhcCCCEEEEeCcc-
Confidence 87753210 01114678888999999999999999999999988999999999999999976555689999984
Q ss_pred ChhHHHhhChhHHHHHHHcCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHH
Q 006532 393 PTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEAL 472 (641)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~ 472 (641)
.+.+..++|++.+++++.|+|+.+++++|.|..|+++|||+||++++|+|||||||||++|+|+||+||++|+++.+++
T Consensus 321 -~~~~~~~~p~i~~~~~~~gid~~~~~i~v~p~~h~t~GGi~vd~~~~t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~ 399 (541)
T PRK07804 321 -IEGFARRFPTITASCRAAGIDPVRQPIPVAPAAHYSCGGVVTDVYGRTSVPGLYAAGEVACTGVHGANRLASNSLLEGL 399 (541)
T ss_pred -HHHHHHHhhHHHHHHHHhCcCCcCCeEEEEHHHhhcCCCEEECCCCcccCCCeEEcccccccccCCCcccHHHHHHHHH
Confidence 4677789999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCccccCHHHHHHHHHHHH
Q 006532 473 VFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRID 552 (641)
Q Consensus 473 v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l~ 552 (641)
+||++||++|+++.+.... ... .. .+. ......+.+++++||++||+++||+|++++|++||++|+
T Consensus 400 v~G~~ag~~aa~~~~~~~~--~~~--~~---~~~-------~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~ 465 (541)
T PRK07804 400 VVGERAGAAAAAHAAAAGR--PRA--TP---AVG-------PEPGLLPALDRAELQRAMTRGAGVLRSAAGLARAADRLA 465 (541)
T ss_pred HHHHHHHHHHHHhhcccCc--ccc--ch---hhc-------ccccCchHHHHHHHHHHHHhcCCeEEcHHHHHHHHHHHH
Confidence 9999999999887532211 000 00 000 011134677889999999999999999999999999998
Q ss_pred HHHHHHHHhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeeec
Q 006532 553 ELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIIL 622 (641)
Q Consensus 553 ~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~ 622 (641)
++.... .+++...+|++|||++|+++++|||.|+||||+|||+|||++|++ |.+++++
T Consensus 466 ~~~~~~-----------~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~~~-~~~~~~~ 523 (541)
T PRK07804 466 AGAPAR-----------VVPGRADWEDTNLTLVARALVAAALARTESRGCHWREDFPDTDDE-WARSIVV 523 (541)
T ss_pred HHHhhc-----------ccchhHHHHHHhHHHHHHHHHHHHHhcCCCcccccCCCCCccChh-hhceEEE
Confidence 864211 123467789999999999999999999999999999999999984 5565553
No 22
>PRK07512 L-aspartate oxidase; Provisional
Probab=100.00 E-value=2.2e-88 Score=744.55 Aligned_cols=489 Identities=41% Similarity=0.576 Sum_probs=429.9
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC-CCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHH
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP-HESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDET 156 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~-~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~ 156 (641)
.+.++||||||+|.|||+||+.|+ + +|+||||... .+|+|.+++||+++..++.|+++.|++|+++.+.+++++++
T Consensus 6 ~~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~~~ 83 (513)
T PRK07512 6 RILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDPAV 83 (513)
T ss_pred cCCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCHHH
Confidence 356799999999999999999997 6 9999999987 56788899999988888889999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeec-cCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEE
Q 006532 157 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHA-ADMTGREIERALLEAVVSDPNISVFEHHFAIDL 235 (641)
Q Consensus 157 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~-~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l 235 (641)
++.+++++++.++||+++|++|++.++|.+....+++|+.+|+++. .+.+|..++..|.+.+.+..||++++++.+++|
T Consensus 84 v~~~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~~~~~v~~L 163 (513)
T PRK07512 84 AALITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEARRL 163 (513)
T ss_pred HHHHHHHHHHHHHHHHHhCCccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEECcChhhe
Confidence 9999999999999999999999988888877778899999999987 467899999999998876459999999999999
Q ss_pred EecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceee
Q 006532 236 LTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTAL 315 (641)
Q Consensus 236 ~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~ 315 (641)
+.+ ++ +|+|+.+.+ +++...|+||.|||||||++++|..+++++.+||||+.||+++||.+.+|||+||||+.+
T Consensus 164 i~~-~g---~v~Gv~~~~--~~~~~~i~Ak~VVLATGG~~~~~~~~~~~~~~tGDGi~mA~~aGA~l~~me~~q~~Pt~~ 237 (513)
T PRK07512 164 LVD-DG---AVAGVLAAT--AGGPVVLPARAVVLATGGIGGLYAVTTNPAGAFGQGLALAARAGAVIADPEFVQFHPTAI 237 (513)
T ss_pred eec-CC---EEEEEEEEe--CCeEEEEECCEEEEcCCCCcCCCCCCCCCCCCchHHHHHHHHcCCcEeCCcceEEEeeee
Confidence 876 56 899998875 344567999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEeCCCCChh
Q 006532 316 ADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTE 395 (641)
Q Consensus 316 ~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~lD~~~~~~~ 395 (641)
...+. ..+++++.++++|+++||.+|+|||++|++..++.||+++++++.+++.++ ..+|+|.++.+.+
T Consensus 238 ~~~~~---------~~~l~~~~~rg~g~~lvn~~G~RF~~~~~~~~e~~~rd~v~~ai~~~~~~g--~~v~ld~~~~~~~ 306 (513)
T PRK07512 238 DIGRD---------PAPLATEALRGEGAILINEDGERFMADIHPGAELAPRDVVARAVFAEIAAG--RGAFLDARAALGA 306 (513)
T ss_pred cCCCC---------CcceeehhhhCCceEEECCCCCChhhhcCCccccCcHHHHHHHHHHHHhcC--CEEEEeccccchH
Confidence 54211 145788889999999999999999999999889999999999999998764 4689999988877
Q ss_pred HHHhhChhHHHHHHHcCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHH
Q 006532 396 KILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFA 475 (641)
Q Consensus 396 ~~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G 475 (641)
.+.+++|++.+++.+.|+|+.+++++|.|..|+++|||+||.+++|+||||||||||+|+|+||+||++||||++|+|||
T Consensus 307 ~~~~~~~~i~~l~~~~gid~~~~~i~v~p~~h~t~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G 386 (513)
T PRK07512 307 HFATRFPTVYAACRSAGIDPARQPIPVAPAAHYHMGGIAVDADGRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFA 386 (513)
T ss_pred HHHHHhhHHHHHHHHhCcCCCCCceEEecccCEEcCCEEECCCCccccCCEEecccccccCCCcccchHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHHHHHHhhhcccccccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHH
Q 006532 476 RRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELE 555 (641)
Q Consensus 476 ~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~ 555 (641)
++||++|+++...... +..+.. . . ..+.+..++||++||+|+||+|++++|+++|.+|++|+
T Consensus 387 ~~ag~~aa~~~~~~~~----------~~~~~~--~----~--~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~ 448 (513)
T PRK07512 387 ARAAEDIAGTPAAAAA----------PLSAAA--A----P--ALDPADLALLRPIMSRHVGVLRDADGLRRAIAALLPLE 448 (513)
T ss_pred HHHHHHHHHHhhcccc----------cccccc--c----c--cccHHHHHHHHHHHHhhccEEEcHHHHHHHHHHHHHHH
Confidence 9999999887532210 000000 0 0 11234557899999999999999999999999999997
Q ss_pred HHHHHhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeeecC
Q 006532 556 AEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIILP 623 (641)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~~ 623 (641)
++.. +++||+++|+++++|||.|+||||+|||+|||++|++ |++++++.
T Consensus 449 ~~~~------------------~~~~~~~~a~~~~~aal~R~ESRG~H~R~D~p~~~~~-~~~~~~~~ 497 (513)
T PRK07512 449 AGAG------------------PAADPATVALLIAVAALAREESRGAHFRTDFPLTAPA-ARRTRLTL 497 (513)
T ss_pred HHHH------------------HHHhHHHHHHHHHHHHHhCCCCccceeCCcCCccchh-hcceEEEe
Confidence 6421 3579999999999999999999999999999999988 55555443
No 23
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=7.7e-88 Score=747.41 Aligned_cols=519 Identities=38% Similarity=0.589 Sum_probs=445.7
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC-CCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP-HESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 157 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~-~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~ 157 (641)
+.++||||||+|.|||+||+.| +.| +|+||||... .+|++.+++|++++..++.|+++.|+.|+++.+.+++|++++
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv 83 (543)
T PRK06263 5 IMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLV 83 (543)
T ss_pred eeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHH
Confidence 4679999999999999999999 899 9999999875 467788899999888888899999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006532 158 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 158 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
+.+++++++.++||+++|++|.++++|.+....+++|+++|.++..+.+|..+...|.+.+++ .||++++++.+++|++
T Consensus 84 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~-~gv~i~~~t~v~~Li~ 162 (543)
T PRK06263 84 EILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIK-ERIKILEEVMAIKLIV 162 (543)
T ss_pred HHHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhc-CCCEEEeCeEeeeeEE
Confidence 999999999999999999999988888777777899999999998888899999999998887 6999999999999998
Q ss_pred cCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecC
Q 006532 238 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALAD 317 (641)
Q Consensus 238 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~ 317 (641)
++++ +|+|+++.+..+|+.+.|+||.|||||||++.+|+.+++++.+||||+.||+++||.+.+|||+||||+.+..
T Consensus 163 ~~~~---~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~~~~~~~~~~~~tGdG~~ma~~aGa~l~~me~~q~~p~~~~~ 239 (543)
T PRK06263 163 DENR---EVIGAIFLDLRNGEIFPIYAKATILATGGAGQLYPITSNPIQKTGDGFAIAYRAGAELIDMEMVQFHPTGMVY 239 (543)
T ss_pred eCCc---EEEEEEEEECCCCcEEEEEcCcEEECCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCCcCccceeEecceecc
Confidence 7443 6999998876678888899999999999999999999999999999999999999999999999999987643
Q ss_pred CCCCCCCCCCCCccceeeccccCCCcEEEeCCCCcccccccc-ccccCchhHHHHHHHHHHHhcCC---CeEEEeCCCCC
Q 006532 318 EGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDE-RAELAPRDVVARSIDDQLKKRNE---KYVLLDISHKP 393 (641)
Q Consensus 318 ~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~-~~~~~~r~~~~~~i~~~~~~~~~---~~v~lD~~~~~ 393 (641)
+.. ...+++++.++++|+++||.+|+||+++|++ ..++.+|+++++++.+++..+++ ..+|+|.++++
T Consensus 240 ~~~--------~~~~~~~~~~~~~g~~lvn~~G~RF~~~y~~~~~e~~~~~~~~~ai~~~~~~g~g~~~~~~~ld~~~~~ 311 (543)
T PRK06263 240 PYS--------GRGILVTEAVRGEGGILYNKNGERFMKRYDPERMELSTRDVVARAIYTEIQEGRGTNHGGVYLDVTHLP 311 (543)
T ss_pred CCC--------CCceEEeeeecCCccEEECCCCCCcccccCcccccccchhHHHHHHHHHHHhcCCCCCceEEEECCCCC
Confidence 210 1145677888889999999999999999998 46899999999999999876442 24999999999
Q ss_pred hhHHHhhChhHHHHHHHcCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHH
Q 006532 394 TEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALV 473 (641)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v 473 (641)
.+.+.+.+|.+++.+.+.|+|+.++|+++.|..|+++|||+||+++||+|||||||||++ +|+||+||++||+|++|+|
T Consensus 312 ~~~l~~~~~~~~~~~~~~G~D~~~~pi~v~p~~~~t~GGi~vd~~~~t~IpGLyAaGE~~-gg~hG~~rlgG~sl~~a~v 390 (543)
T PRK06263 312 DEVIEEKLETMLEQFLDVGVDIRKEPMEVAPTAHHFMGGIRINEDCETNIPGLFACGEVA-GGVHGANRLGGNALADTQV 390 (543)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCEEEeccccEecCCEEECCCCcccCCCeEeccccc-cCCCCCCccchhhhhhhHH
Confidence 888888898877777778999999999999999999999999999999999999999997 7999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccccCCccccccc--hhhhhchHHHHHHHHHHHHhcCccccCHHHHHHHHHHH
Q 006532 474 FARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVM--HNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRI 551 (641)
Q Consensus 474 ~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l 551 (641)
||++||++|+++++..... .......... .... ..+ ......+.+++++||++||+++|++|++++|++||++|
T Consensus 391 ~Gr~Ag~~aa~~~~~~~~~-~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l 466 (543)
T PRK06263 391 FGAIAGKSAAKNAENNEFK-KVNRSVEEDI--ARIK-SEIKFLNGSINPYDLIDELKKTMWDYVSIVRNEKGLKKALEEI 466 (543)
T ss_pred HHHHHHHHHHHHhhhcCCC-cchhhhhhhH--HHHH-HHhhhcccCCCHHHHHHHHHHHHHhhCcEEEcHHHHHHHHHHH
Confidence 9999999999987532210 0000000000 0000 000 01123578899999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeee
Q 006532 552 DELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTII 621 (641)
Q Consensus 552 ~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~ 621 (641)
++|++++..+. ..+.+++++++|++||+++|+++++|||+|+||||+|||.|||++|| +|.++++
T Consensus 467 ~~l~~~~~~~~----~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~~~-~~~~~~~ 531 (543)
T PRK06263 467 NELKEKLKDLK----VNGIVDFNKALELENMILVAELVIKSALLRKESRGAHYREDYPETND-EWFGNII 531 (543)
T ss_pred HHHHHHHHhcc----cccchhhHHHHHHHHHHHHHHHHHHHHHhCCCCcceeccCCCCccCh-hhcCeEE
Confidence 99998876543 23457889999999999999999999999999999999999999998 4566554
No 24
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=100.00 E-value=1.5e-87 Score=750.86 Aligned_cols=522 Identities=40% Similarity=0.580 Sum_probs=446.8
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccC---CCCCHHHHHHHHHHhccCCCCHHHHHH
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC---PSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~---~~d~~~~~~~d~~~~g~~~~~~~~~~~ 159 (641)
||||||+|+|||+||+.|++.| +|+||||....+|++.+++||+++... +.|+++.++.|+++.+.+++++++++.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~ 80 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY 80 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 8999999999999999999999 999999999888888889999887653 568999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006532 160 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 239 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~ 239 (641)
+++++++.++||+++|++|.+.++|.+....+++|+.+|..+..+.+|..+...|.+.+++. ||++++++.+++|+.+
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~-gv~i~~~~~v~~L~~~- 158 (566)
T TIGR01812 81 MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKL-GVSFFNEYFALDLIHD- 158 (566)
T ss_pred HHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHc-CCEEEeccEEEEEEEe-
Confidence 99999999999999999999888887776778999999999888889999999999988874 9999999999999986
Q ss_pred CCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecCCC
Q 006532 240 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEG 319 (641)
Q Consensus 240 ~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g 319 (641)
+| +|+||++.+..+|+...|+||.|||||||++.+|..+++++.++|||+.|++++||.+.+|||+||||+.+...
T Consensus 159 ~g---~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~~~~~~~~~~tGdGi~ma~~aGa~l~~~e~~q~~p~~~~~~- 234 (566)
T TIGR01812 159 DG---RVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYKTTTNAHINTGDGMAMALRAGVPLKDMEFVQFHPTGLYPS- 234 (566)
T ss_pred CC---EEEEEEEEECCCCcEEEEECCeEEECCCcccCCCCCCCCCCCcccHHHHHHHHcCCCccCCcceEEeeeeeCCC-
Confidence 56 89999998777787778999999999999999999889999999999999999999999999999999876421
Q ss_pred CCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC------CeEEEeCCCC
Q 006532 320 LPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE------KYVLLDISHK 392 (641)
Q Consensus 320 ~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~~~~r~~~~~~i~~~~~~~~~------~~v~lD~~~~ 392 (641)
.+++++.++++|+++||.+|+|||++|++. .++.+|+++++++.+++.++.+ .++|+|+++.
T Consensus 235 -----------~~~~~e~~~~~g~~lvn~~G~RF~~~~~~~~~e~~~r~~~~~ai~~~~~~~~g~~~~~~~~v~~d~~~~ 303 (566)
T TIGR01812 235 -----------GILITEGCRGEGGYLVNKNGERFMERYAPEKMELAPRDVVSRAMWTEIREGRGVGSPPGDYVYLDLRHL 303 (566)
T ss_pred -----------CcEEeccccCCceEEECCCCCCCCcccCccccccCchhHHHHHHHHHHHhcCCCCCCCCCEEEEECCCC
Confidence 356788889999999999999999999874 6899999999999999876432 4699999999
Q ss_pred ChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCC----cccCCeeecccccCCCCCCCCccchhh
Q 006532 393 PTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGE----TNVRGLYVAGEVACTGLHGANRLASNS 467 (641)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~----T~ipGLyAaGe~a~~g~~Ga~rl~g~s 467 (641)
+.+.+.+++|++.+++.+ .|+|+.++++++.|..|+++|||+||.++| |+|||||||||++|+|+||+|||+||+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~g~d~~~~~i~v~p~~h~t~GGi~id~~~~v~~~t~I~GLyAaGe~a~~g~hGa~rl~g~s 383 (566)
T TIGR01812 304 GEEKIEERLPQIRELAKYFAGVDPVKEPIPVRPTAHYSMGGIPTDYTGRVICETIVKGLFAAGECACVSVHGANRLGGNS 383 (566)
T ss_pred CHHHHHHHchHHHHHHHHHcCCCCCCCceeeehhhcccCCCeEECcCcccccCcccCCeeecccccccCcCcccccchhh
Confidence 888888899999999998 599999999999999999999999999999 999999999999988999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCccccCHHHHHHH
Q 006532 468 LLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTA 547 (641)
Q Consensus 468 l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~a 547 (641)
|++|+|||++||++|+++++....+...........................+.+++++||++||+++||+|++++|+++
T Consensus 384 l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lq~~m~~~~gi~R~~~~L~~a 463 (566)
T TIGR01812 384 LLELVVFGRIAGEAAAEYAAKTGNPAADIEEEAVKAEEALIDLLVESNGGERVAKIREELGDTMDDNVGIFRTEELLKKA 463 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHhccceecHHHHHHH
Confidence 99999999999999999875421110000000000000000000000011346778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhc-cCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeeec
Q 006532 548 EWRIDELEAEWETYLFE-HGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIIL 622 (641)
Q Consensus 548 l~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~ 622 (641)
+.+|++|++++..+... .....+++++.++|++||+++|+++++|||+|+||||+|||.|||++|+++|.++++.
T Consensus 464 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~~~~~~~~~~~ 539 (566)
T TIGR01812 464 VDEIEELRERYKNVRINDKSKVFNTDLLEALELGNMLDLAEVVAAGALNRKESRGAHAREDYPERDDENWLKHTLA 539 (566)
T ss_pred HHHHHHHHHHHHhhcccCcccccCHhHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCCCCCCcCcccccceEEE
Confidence 99999998877654211 1122357788999999999999999999999999999999999999998878877653
No 25
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=1e-87 Score=746.68 Aligned_cols=509 Identities=36% Similarity=0.533 Sum_probs=437.9
Q ss_pred HHHHHHHHhcC-CeEEEEecCCCCCccccccCceeecc---CCCCCHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHH
Q 006532 95 LCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL---CPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRE 170 (641)
Q Consensus 95 l~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~---~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~~i~~ 170 (641)
|+||+.|++.| +|+||||....+|+|.+++|||++.. .+.|+++.|+.|+++.+.+++|+++++.+++++++.++|
T Consensus 1 l~AAl~aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~~l~~~a~~~i~~ 80 (570)
T PRK05675 1 MRAALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMCSVGPEAVFE 80 (570)
T ss_pred ChhHHhHHhcCCcEEEEEcCCCCCchHHHhhhhhhcccCCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 57999999999 99999999998999999999998776 467999999999999999999999999999999999999
Q ss_pred HHHcCCccccCCCCCcccccCCCccc--------cceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCC
Q 006532 171 LIAIGASFDRGEDGNLHLAREGGHSH--------HRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGP 242 (641)
Q Consensus 171 l~~~Gv~~~~~~~g~~~~~~~gg~~~--------~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~ 242 (641)
|++||++|+++++|.+....+++|+. +|+++..+.+|..++..|.+.+.+ .||++++++.+++|+.+++|
T Consensus 81 L~~~Gv~F~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~~~tG~~i~~~L~~~~~~-~gi~i~~~~~~~~Li~~~~g- 158 (570)
T PRK05675 81 LEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQGNLK-NGTTFLNEWYAVDLVKNQDG- 158 (570)
T ss_pred HHHcCCccccCCCCceeecccCccccccccCCccceEEecCCCCHHHHHHHHHHHHhc-cCCEEEECcEEEEEEEcCCC-
Confidence 99999999998899888777888864 599999899999999999999887 59999999999999986566
Q ss_pred CceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecCCCCCC
Q 006532 243 DAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPI 322 (641)
Q Consensus 243 ~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~ 322 (641)
+|+||++.+..+|+.+.|+||+|||||||++++|..+++++.+||||++||+++||.+.||||+||||+.+...
T Consensus 159 --~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~~~~~~~tGDG~~mA~~aGA~l~~me~~q~~Pt~~~~~---- 232 (570)
T PRK05675 159 --AVVGVIAICIETGETVYIKSKATVLATGGAGRIYASTTNALINTGDGVGMALRAGVPVQDIEMWQFHPTGIAGA---- 232 (570)
T ss_pred --eEEEEEEEEcCCCcEEEEecCeEEECCCCcccccCCCCCCCCcCcHHHHHHHHcCCCeeCccceeeecceeCCC----
Confidence 89999998888899999999999999999999999999999999999999999999999999999999877431
Q ss_pred CCCCCCCccceeeccccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC-----CeEEEeCCCCChhH
Q 006532 323 KPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE-----KYVLLDISHKPTEK 396 (641)
Q Consensus 323 ~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~~~~r~~~~~~i~~~~~~~~~-----~~v~lD~~~~~~~~ 396 (641)
.+++++.++++|++++|.+|+|||++|++. .++.+||+++++|..++..+.+ ..+|+|.++++.+.
T Consensus 233 --------~~l~~e~~rg~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~ei~~~~g~~~~~~~v~ld~~~l~~~~ 304 (570)
T PRK05675 233 --------GVLVTEGCRGEGGYLINKHGERFMERYAPNAKDLAGRDVVARSMVKEILAGNGCGPNKDHVLLKLDHLGEEV 304 (570)
T ss_pred --------ceEeeccccCCCcEEECCCCCCcccccCcccccccchhHHHHHHHHHHHhcCCccCCCCEEEEEcCCCCHHH
Confidence 467888899999999999999999999876 5899999999999999876532 35999999999888
Q ss_pred HHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCCc----------ccCCeeecccccCCCCCCCCccch
Q 006532 397 ILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGET----------NVRGLYVAGEVACTGLHGANRLAS 465 (641)
Q Consensus 397 ~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T----------~ipGLyAaGe~a~~g~~Ga~rl~g 465 (641)
+..++|.+.+.++. .|+||.++|++|.|..||+||||.||.+++| +|||||||||++|+|+||+|||+|
T Consensus 305 l~~~~~~~~~~~~~~~~~d~~~~~i~v~P~~h~t~GGi~vd~~g~~~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlgg 384 (570)
T PRK05675 305 LHSRLPGICELSKTFAHVDPVVAPIPVVPTCHYMMGGVATNIHGQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGG 384 (570)
T ss_pred HHHhccHHHHHHHHhcCCCcCCCceEeehhHhccCCCcccCCCCeeecccccccCCccCCeeecccccccCCCCcccccc
Confidence 89999998888877 4899999999999999999999999999986 799999999999889999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcccc--cccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCccccCHHH
Q 006532 466 NSLLEALVFARRAVQPSIDHKKSTSI--DLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTS 543 (641)
Q Consensus 466 ~sl~~a~v~G~~Ag~~aa~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~ 543 (641)
|||++|+|||++||++|+++++.... +..... ..... .........+....+.+++++||++||+|+||+|++++
T Consensus 385 nsl~~a~v~Gr~Ag~~aa~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~ 461 (570)
T PRK05675 385 NSLLDLVVFGRAAGLHLEKALKEGIEYRDASESD-IDAAL--ARLNKLNERTGGEDVAALRRELQSCMQNYFGVFRTGEY 461 (570)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcccccccCChHH-HHHHH--HHHHHHhccCCCCCHHHHHHHHHHHHHhhCCceecHHH
Confidence 99999999999999999988643210 100000 00000 00000000001134677899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccC-cccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeeec
Q 006532 544 LQTAEWRIDELEAEWETYLFEHG-WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIIL 622 (641)
Q Consensus 544 L~~al~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~ 622 (641)
|++||.+|++|++++.++...+. ...+..+++++|++|||++|+++++|||.|+||||+|||+|||+++|++|+++++.
T Consensus 462 L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~ 541 (570)
T PRK05675 462 MQKGIAQLADLRERIANVKINDKSQAFNTARIEALELQNLLEVAEATAIAAEVRKESRGAHAREDFEDRDDENWLCHTLY 541 (570)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCCCCCChhhhcceEEE
Confidence 99999999999988876532211 12234578899999999999999999999999999999999999988777777653
No 26
>PRK08071 L-aspartate oxidase; Provisional
Probab=100.00 E-value=3.5e-87 Score=734.41 Aligned_cols=496 Identities=43% Similarity=0.665 Sum_probs=427.7
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHH
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 160 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~ 160 (641)
++||||||+|.|||+||+.|++ | +|+||||....+|+|.+++||++....+.|+++.|+.|+++.+.+++|+++++.+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~ 81 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRYL 81 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHHH
Confidence 6899999999999999999987 8 9999999999899999999999888878899999999999999999999999999
Q ss_pred HHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeecc-CCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006532 161 CTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAA-DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 239 (641)
Q Consensus 161 ~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~-~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~ 239 (641)
++++++.++||.++|++|+++.+|.+.+..+++|+.+|+++.. +.+|..+...|.+.+. .||++++++.+++|+.+
T Consensus 82 ~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~--~gV~i~~~~~v~~Li~~- 158 (510)
T PRK08071 82 VEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV--PHVTVVEQEMVIDLIIE- 158 (510)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh--cCCEEEECeEhhheeec-
Confidence 9999999999999999999888888777788999999998874 7789999999998875 39999999999999976
Q ss_pred CCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecCCC
Q 006532 240 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEG 319 (641)
Q Consensus 240 ~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g 319 (641)
++ +|.|+.+.+ .+|+...|+||.|||||||++.+|+.+++++.+||||+.||+++|+.+.+|||+||||+.+...+
T Consensus 159 ~g---~v~Gv~~~~-~~g~~~~i~Ak~VVlATGG~~~~~~~~t~~~~~tGdG~~ma~~aGa~l~~me~~q~~pt~~~~~~ 234 (510)
T PRK08071 159 NG---RCIGVLTKD-SEGKLKRYYADYVVLASGGCGGLYAFTSNDKTITGDGLAMAYRAGAELVDLEFIQFHPTMLYANG 234 (510)
T ss_pred CC---EEEEEEEEE-CCCcEEEEEcCeEEEecCCCcccccCCCCCCCcccHHHHHHHHcCCceeCCcceeEeeeEecCCC
Confidence 56 899999877 46777789999999999999999999999999999999999999999999999999998775432
Q ss_pred CCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEeCCCCChhHHHh
Q 006532 320 LPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILS 399 (641)
Q Consensus 320 ~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~lD~~~~~~~~~~~ 399 (641)
.+ ..++++.++++|++++|.+|+|||++|++..++.|||++++++..++.++ ..+|+|+++.+ .+.+
T Consensus 235 ~~---------~~li~e~~rg~g~~lvn~~G~RF~~~~~~~~e~~~rd~v~~ai~~~~~~~--~~v~ld~~~~~--~~~~ 301 (510)
T PRK08071 235 RC---------VGLVSEAVRGEGAVLINEDGRRFMMGIHPLADLAPRDVVARAIHEELLSG--EKVYLNISSIQ--NFEE 301 (510)
T ss_pred cc---------ceeechhhcCCceEEECCCCCCCccccCccccCCCHHHHHHHHHHHHHcC--CeEEEeccchH--HHHH
Confidence 11 23678888999999999999999999999889999999999999998764 47999998865 4677
Q ss_pred hChhHHHHHHHcCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHH
Q 006532 400 HFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAV 479 (641)
Q Consensus 400 ~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag 479 (641)
++|++.+++++.|+|+.++++||.|..|+++|||+||.+++|+|||||||||++|+|+||+||++||||++|+|||++||
T Consensus 302 ~~~~i~~~~~~~gid~~~~~i~v~p~~h~~~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag 381 (510)
T PRK08071 302 RFPTISALCEKNGVDIETKRIPVVPGAHFLMGGVKTNLDGETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAA 381 (510)
T ss_pred HhhHHHHHHHHhCcCCCCCceeEehhheEEcCCEEECCCCcccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred HHHHHhhhcccccccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHH
Q 006532 480 QPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWE 559 (641)
Q Consensus 480 ~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~ 559 (641)
++|+.+..... +.... +.. . ......+...+++||++||+++||+|++++|++|+.+|++|+.+..
T Consensus 382 ~~aa~~~~~~~-~~~~~--------~~~--~---~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~a~~~l~~l~~~~~ 447 (510)
T PRK08071 382 EHILTKATKPR-LNPFA--------EKE--K---KFIVLNHLPTKEEIQEKMMKYVGIVRTEQSLSEAKRWLEKYGVRNM 447 (510)
T ss_pred HHHHhhccCCc-ccchh--------hhh--h---hhccccchHHHHHHHHHHHhhccEEEcHHHHHHHHHHHHHHHHhhh
Confidence 99887642210 00000 000 0 0000111233579999999999999999999999999999963321
Q ss_pred HhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeee
Q 006532 560 TYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTII 621 (641)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~ 621 (641)
... . .......+|++|||++|+++++|||+|+||||+|||+|||++ + |.++++
T Consensus 448 --~~~--~--~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~--~-~~~~~~ 500 (510)
T PRK08071 448 --ILD--H--DALTNEEIELSHMLTVAKLIVVSALQRTESRGGHYRSDYPHR--N-WRGKEI 500 (510)
T ss_pred --hcc--c--cccchhHHHHHhHHHHHHHHHHHHHhCCCCccceecCCCCcc--c-cCceEE
Confidence 100 0 111246789999999999999999999999999999999998 3 555554
No 27
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=100.00 E-value=2.2e-86 Score=727.13 Aligned_cols=487 Identities=47% Similarity=0.718 Sum_probs=427.8
Q ss_pred cccEEEECccHHHHHHHHHHHhcCCeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHHH
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~ 161 (641)
++||||||+|+|||+||+.|++.|.|+||||....+|+|.+++||+++...+.|+++.|+.|+++.+.+++|+++++.++
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 81 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGRVIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFVV 81 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCCEEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHHH
Confidence 58999999999999999999998899999999888899999999999888888999999999999999999999999999
Q ss_pred HHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
+++++.++||+++|++|.+..+|.+.+..+++|+++|+++..+.+|..+...|.+.+++..||++++++.|++|+.+ ++
T Consensus 82 ~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g 160 (488)
T TIGR00551 82 SDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIE-TG 160 (488)
T ss_pred HhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeecc-CC
Confidence 99999999999999999988888888888899999999998888999999999999987469999999999999986 55
Q ss_pred CCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecCCCCC
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLP 321 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~ 321 (641)
+|.|+.+.+. ++...|+|+.||+||||++++|..++++..++|||+.||+++|+.+.+|||+||||+.+...+.
T Consensus 161 ---~v~Gv~~~~~--~~~~~i~A~~VVlAtGG~~~~~~~~~~~~~~tGdG~~~A~~aGa~l~~me~~q~~pt~~~~~~~- 234 (488)
T TIGR00551 161 ---RVVGVWVWNR--ETVETCHADAVVLATGGAGKLYQYTTNPKISTGDGIALAWRAGVRVRDLEFNQFHPTALYKPRA- 234 (488)
T ss_pred ---EEEEEEEEEC--CcEEEEEcCEEEECCCcccCCCCCcCCCCccCcHHHHHHHHcCCcEECCcceEEEeeEecCCCC-
Confidence 7999988763 4456799999999999999999999999999999999999999999999999999987754321
Q ss_pred CCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEeCCCCChhHHHhhC
Q 006532 322 IKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHF 401 (641)
Q Consensus 322 ~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~lD~~~~~~~~~~~~~ 401 (641)
..+++++.++++|++++|.+|+||+++|++..++.|||++++++.+++.+++..++|+|.++.+ .+.+++
T Consensus 235 --------~~~l~~~~~~g~g~~lvn~~G~RF~~~~~~~~el~~rd~v~~ai~~~~~~~~~~~v~ld~~~~~--~~~~~~ 304 (488)
T TIGR00551 235 --------RYFLITEAVRGEGAYLVDRDGTRFMADFHPRGELAPRDIVARAIDHEMKRGGADCVFLDASGIE--AFRQRF 304 (488)
T ss_pred --------cceeeehhhcCCceEEECCCCCChhhccCcccccCchHHHHHHHHHHHHhcCCCeEEecCcchH--HHHHHc
Confidence 1357888889999999999999999999998999999999999999998765457999999865 477899
Q ss_pred hhHHHHHHHcCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHH
Q 006532 402 PNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQP 481 (641)
Q Consensus 402 ~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~ 481 (641)
|++.+++.+.|+|+.++|++|.|..|+++|||+||.++||+|||||||||++|+|+||+||++||||++|+|||++||++
T Consensus 305 ~~~~~~~~~~G~D~~~~~i~v~p~~h~t~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~ 384 (488)
T TIGR00551 305 PTIYAKCLGAGIDPTREPIPVVPAAHYTCGGISVDDHGRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAED 384 (488)
T ss_pred chHHHHHHHhCCCCCCCceecccccEEecCCEEECCCCcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHhhhcccccccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHh
Q 006532 482 SIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETY 561 (641)
Q Consensus 482 aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~ 561 (641)
|+++....... ............ .. .. ...+.+++++||++||+++||+|++++|++|+++|++|++++..
T Consensus 385 aa~~~~~~~~~-~~~~~~~~~~~~---~~---~~-~~~~~~~~~~l~~~m~~~~gi~r~~~~l~~al~~~~~l~~~~~~- 455 (488)
T TIGR00551 385 ISRRPPYASDI-STSPPWDEPRSE---NP---DD-RVVLQHNMSELRSFMWDYAGIVRLTKSLERALRRLVMLQQEIDE- 455 (488)
T ss_pred HHhhccccCcc-chhhhhhhhhhc---cc---cc-ccchHHHHHHHHHHHhheeeEEEcHHHHHHHHHHHHHHHHHHHH-
Confidence 98875321110 000000000000 00 00 12356778899999999999999999999999999999876532
Q ss_pred hhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCC
Q 006532 562 LFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 609 (641)
Q Consensus 562 ~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P 609 (641)
++++||+++|+++++|||.|+||||+|||+|||
T Consensus 456 ---------------~~~~~~~~~a~~~~~~al~R~ESrG~H~R~D~p 488 (488)
T TIGR00551 456 ---------------YELRNLVQVAKLITRSALMREESRGAHFRLDYP 488 (488)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHhCCCCccceecCCCC
Confidence 247999999999999999999999999999998
No 28
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=100.00 E-value=2.9e-85 Score=727.12 Aligned_cols=502 Identities=38% Similarity=0.568 Sum_probs=432.0
Q ss_pred HHhcC-CeEEEEecCCCCCccccccCceeeccC--CCCCHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHHHcCCc
Q 006532 101 VAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGAS 177 (641)
Q Consensus 101 aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~--~~d~~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~ 177 (641)
|++.| +|+||||....+|+|.+++|||++... ++|+++.|+.|+++.+.+++|+++++.+++++++.++||+++|++
T Consensus 1 ~a~~G~~VilveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~~~~~s~~~i~~L~~~Gv~ 80 (565)
T TIGR01816 1 LAKGGVNTACVTKLFPTRSHTVAAQGGISAALGNMEEDNWRWHMYDTVKGSDWLGDQDAIEYMCKQAPEAVLELEHMGMP 80 (565)
T ss_pred CCCCCCceEEEEcCCCCCccHHHhcchheeccCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 45778 999999999999999999999988776 579999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcccccCCCcc--------ccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEE
Q 006532 178 FDRGEDGNLHLAREGGHS--------HHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGV 249 (641)
Q Consensus 178 ~~~~~~g~~~~~~~gg~~--------~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv 249 (641)
|++.++|.+....+++|+ ++|+++..+.+|..++..|.+.+.+ .||+|++++.+++|+++ +| +|+||
T Consensus 81 f~~~~~g~~~~~~~gg~~~~~~~~~~~~R~~~~~~~~G~~i~~~L~~~~~~-~gi~i~~~~~~~~Li~~-~g---~v~Ga 155 (565)
T TIGR01816 81 FSRTEDGKIYQRPFGGHTRDFGKGGAAERACAAADRTGHAILHTLYQQNLK-ADTSFFNEYFALDLLME-DG---ECRGV 155 (565)
T ss_pred cccCCCCceeecccccccccccCCcceeEEeecCCCchHHHHHHHHHHHHh-CCCEEEeccEEEEEEee-CC---EEEEE
Confidence 998888877766677774 4789998888999999999999987 59999999999999986 67 89999
Q ss_pred EEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecCCCCCCCCCCCCC
Q 006532 250 DTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRE 329 (641)
Q Consensus 250 ~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~ 329 (641)
++.+..+|+.+.|+||+|||||||++++|..+++++.+||||+.||+++||.+.||||+||||+.+...
T Consensus 156 ~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~q~~pt~~~~~----------- 224 (565)
T TIGR01816 156 IAYCLETGEIHRFRAKAVVLATGGYGRIYFSTTNAHTLTGDGTGMVTRAGLPLQDMEFVQFHPTGIAGA----------- 224 (565)
T ss_pred EEEEcCCCcEEEEEeCeEEECCCCccccCCCcCCCCCCccHHHHHHHHcCCcccCCcceEEccCcccCC-----------
Confidence 998877899889999999999999999999999999999999999999999999999999999876421
Q ss_pred ccceeeccccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC-----CeEEEeCCCCChhHHHhhChh
Q 006532 330 NSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE-----KYVLLDISHKPTEKILSHFPN 403 (641)
Q Consensus 330 ~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~~~~r~~~~~~i~~~~~~~~~-----~~v~lD~~~~~~~~~~~~~~~ 403 (641)
.+++++.++++|+++||.+|+||+++|++. .++.+|++++++|..++.++++ .++|+|+++.+.+.+.+++|.
T Consensus 225 -~~l~~e~~r~~g~~lvn~~G~RF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~~~v~ld~~~~~~~~l~~~~~~ 303 (565)
T TIGR01816 225 -GCLITEGCRGEGGILINANGERFMERYAPTAKDLASRDVVSRSMTLEIREGRGVGPNKDHVYLDLDHLGPEVLEGRLPG 303 (565)
T ss_pred -ceEEeccccCCceEEECCCCCCCccccCccccccCchhHHHHHHHHHHHhcCCCCCCCCeEEEEccCCCHHHHHHHhhh
Confidence 457788899999999999999999999876 5899999999999999876542 479999999999999999999
Q ss_pred HHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCC---------cccCCeeecccccCCCCCCCCccchhhhHHHHH
Q 006532 404 IAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGE---------TNVRGLYVAGEVACTGLHGANRLASNSLLEALV 473 (641)
Q Consensus 404 ~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~---------T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v 473 (641)
+.+.+.. .|+|+.++|+++.|.+|+++|||.||.++| |+||||||||||+|+|+||+||++||+|++|+|
T Consensus 304 ~~~~~~~~~G~D~~~~~i~v~p~~h~t~GGi~id~~g~vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~v 383 (565)
T TIGR01816 304 ISETARTFAGVDPVKDPIPVLPTVHYNMGGIPTNYHGQVLRDGNGNDQIVPGLYAAGEAACVSVHGANRLGTNSLLDLVV 383 (565)
T ss_pred HHHHHHHHcCCCCCCCcEEeeeeeeeecCCceeCCCceEcccccCCCCccCCeeecccccccCCCccccchhhHHHHHHH
Confidence 9998887 699999999999999999999999999998 689999999999988999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccc--cccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCccccCHHHHHHHHHHH
Q 006532 474 FARRAVQPSIDHKKSTSI--DLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRI 551 (641)
Q Consensus 474 ~G~~Ag~~aa~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l 551 (641)
||++||++|+++++.... +..... ....... .......+....+.+++++||++||+++||+|++++|++|+.+|
T Consensus 384 fGr~Ag~~aa~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l 460 (565)
T TIGR01816 384 FGRAAGLSAAEYAKPGSDVKPMPPNA-GEESVMR--LDKLRFATGGERVAALRLELQRSMQNHAGVFRTGEVLQKGVEKI 460 (565)
T ss_pred HHHHHHHHHHHhhcccccccccccch-hHHHHHH--HHHHhhccCCCCHHHHHHHHHHHhhCCeeEEECHHHHHHHHHHH
Confidence 999999999998653210 000000 0000000 00000000112467888999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeeec
Q 006532 552 DELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIIL 622 (641)
Q Consensus 552 ~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~ 622 (641)
++|++++..+...+ ....++++++++|++|||++|+++++|||+|+||||+|||+|||++||++|+++++.
T Consensus 461 ~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~ 532 (565)
T TIGR01816 461 SALKERYKNVKINDKSKVWNTDLVEALELQNLLECAEATAVSAEARKESRGAHAREDFPERDDENWLKHTLS 532 (565)
T ss_pred HHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCCCCCccccccEEEE
Confidence 99998876643211 123357889999999999999999999999999999999999999998888887764
No 29
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=100.00 E-value=2.2e-86 Score=722.29 Aligned_cols=535 Identities=39% Similarity=0.553 Sum_probs=467.4
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCC-----CCCHHHHHHHHHHhccCCCC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCP-----SDSVESHMQDTIVAGAYLCD 153 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~-----~d~~~~~~~d~~~~g~~~~~ 153 (641)
..+|||||||||.|||+||+.+++.| +|+||||....+|+|..++||+++.... .|+++.|+.|+++.+++++|
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~d 83 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGD 83 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCC
Confidence 45799999999999999999999999 9999999999999999999999988752 25899999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEE
Q 006532 154 DETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAI 233 (641)
Q Consensus 154 ~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~ 233 (641)
++.+..+++.+++.+.+|++||++|.+..+|.++.+++++++.+|.++..+.+|..++..|.+++.+..+++++++..++
T Consensus 84 qd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~ 163 (562)
T COG1053 84 QDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVL 163 (562)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999985578999999999
Q ss_pred EEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccce
Q 006532 234 DLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPT 313 (641)
Q Consensus 234 ~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~ 313 (641)
+|++++++ .|.|++..+..+|+.+.++||+||+||||++.+|+.+++....||||+.|++++|+.+.||||+||||+
T Consensus 164 ~l~~~~~~---~v~Gvv~~~~~~g~~~~~~akavilaTGG~g~~~~~~t~~~~~tGdG~~ma~~aGa~l~dme~~Q~hpt 240 (562)
T COG1053 164 DLLVDDGG---GVAGVVARDLRTGELYVFRAKAVILATGGAGRLYPYTTNAHIGTGDGVAMAYRAGAPLIDMEFVQFHPT 240 (562)
T ss_pred hheecCCC---cEEEEEEEEecCCcEEEEecCcEEEccCCceEEEeccCCccccCCcHHHHHHhcCCcccCCCccccccc
Confidence 99988554 599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCcccccc--cc-ccccCchhHHHHHHHHHHHhcCC------Ce
Q 006532 314 ALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY--DE-RAELAPRDVVARSIDDQLKKRNE------KY 384 (641)
Q Consensus 314 ~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~--~~-~~~~~~r~~~~~~i~~~~~~~~~------~~ 384 (641)
.+... ..+++|+.|++||+++|.+|+|||+.| .+ ..++.|||++++++..++.++++ .+
T Consensus 241 ~~~~~------------g~l~~e~~RgeGG~l~N~~Gerf~e~~~~~~~~~~l~~rd~~~r~~~~ei~~G~g~~~~~~~~ 308 (562)
T COG1053 241 GLVGS------------GILITEAVRGEGGILLNKDGERFMERYGYAPKYKELAPRDVVSRAILMEIREGRGVDGPGGDY 308 (562)
T ss_pred eecCC------------ceEEeeecccCCCeEecCCcceeeccccccccccccCCcchHHHHHHHHHhcCCCcccCCCce
Confidence 98752 578999999999999999999999984 43 36899999999999999998764 47
Q ss_pred EEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeC-CCCCcccCCeeecccccCCCCCCCCc
Q 006532 385 VLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAG-LQGETNVRGLYVAGEVACTGLHGANR 462 (641)
Q Consensus 385 v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD-~~~~T~ipGLyAaGe~a~~g~~Ga~r 462 (641)
+++|++|++.+.+.+++|.+.+.+.. .|+|+.++|++|.|+.||+||||++| .++.|.||||||||||+|+..||+||
T Consensus 309 v~ldl~hlg~~~~~~~l~~~~~~~~~~~g~D~~~~p~~v~p~~Hy~mGGi~~~~~~~~t~i~GLfAaGe~~~~~~hGanr 388 (562)
T COG1053 309 VYLDLRHLGKEELEERLPGIRELAKKFAGIDPVKEPIPVRPTVHYTMGGIPTNTGRVETKIPGLFAAGEAAGVSHHGANR 388 (562)
T ss_pred EEEEhhhcChHHHHhcCchHHHHHHhhcCCCcccceeEecccceeccCCEeecccccccCCCCeEECceecccccCCccc
Confidence 99999999888888999988777665 68999999999999999999999999 57789999999999999877789999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCccccccch-hhhhchHHHHHHHHHHHHhcCccccCH
Q 006532 463 LASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMH-NILRRTKEVRKELQSIMWRYVGIVRST 541 (641)
Q Consensus 463 l~g~sl~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~m~~~~g~~R~~ 541 (641)
|++|||++++|||++||..+++|++......+...... ......+... ....++.+++++||++|+++++|+|++
T Consensus 389 lG~nsl~~~~v~G~~Ag~~aa~y~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~l~~~m~~~~~i~R~~ 464 (562)
T COG1053 389 LGGNSLLDLVVFGRIAGEAAAEYAKEKSGSPPASAVEA----ERERFDALLRRGGDENPAQIREELQEVMGDNVGIFRNE 464 (562)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHhccCCCchhHHHH----HHHHHHHHHhccCCCCHHHHHHHHHHHhhCCceeccCH
Confidence 99999999999999999999999876543211100000 0000000000 112468999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCee
Q 006532 542 TSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTI 620 (641)
Q Consensus 542 ~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~ 620 (641)
+.|++++++|.+|++++.++...+ ....+.++.+++|+.|||.+|++++.+||.|+||||+|||+|||++||++|++++
T Consensus 465 ~~l~~~~~~i~~l~~~~~~~~~~d~~~~~n~~l~~~~el~~~l~~A~~~~~~al~R~EsRgah~r~d~p~rdD~~w~kht 544 (562)
T COG1053 465 EGLEKALEKLKELRERLKDIRVTDKSELFNTDLRDALELGNMLDVAEAVAASALARTESRGAHYREDYPERDDENWLKHT 544 (562)
T ss_pred HHHHHHHHHHHHHHHHhhcceecchhHhhhhhhHHHHhHHHHHHHHHHHHHHHhcCcccccccCCccCCccchHHHHHHH
Confidence 999999999999999998733221 1223447788999999999999999999999999999999999999999999987
Q ss_pred ec-CCCccccccccc
Q 006532 621 IL-PSLVNCTWSSRQ 634 (641)
Q Consensus 621 ~~-~~~~~~~~~~~~ 634 (641)
+. .+. ++.....|
T Consensus 545 ~~~~~~-~~~~~~~~ 558 (562)
T COG1053 545 LASYDK-KPRLEYEP 558 (562)
T ss_pred HHhcCC-ccceeeee
Confidence 74 333 44443333
No 30
>PRK08401 L-aspartate oxidase; Provisional
Probab=100.00 E-value=1.6e-78 Score=660.56 Aligned_cols=456 Identities=35% Similarity=0.528 Sum_probs=392.4
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHHH
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~ 161 (641)
.||||||+|+|||+||+.|++.| +|+||||.. ..+++.+++||++....+.|+++.|+.|+++.+.++++++.++.++
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~-~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 80 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI-KKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI 80 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC-CCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 69999999999999999999999 999999986 4567788899998877778999999999999999999999999999
Q ss_pred HHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
+++++.++||+++|++|+.. ...++|+++|..+..+.+|..+...|.+.+++ .|++++++ .+++|+.+ ++
T Consensus 81 ~~~~~~i~~L~~~Gv~f~~~-------~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~-~gv~i~~~-~v~~l~~~-~g 150 (466)
T PRK08401 81 SKSSEAYDFLTSLGLEFEGN-------ELEGGHSFPRVFTIKNETGKHIIKILYKHARE-LGVNFIRG-FAEELAIK-NG 150 (466)
T ss_pred HHHHHHHHHHHHcCCCcccC-------CCcCCccCCeEEECCCCchHHHHHHHHHHHHh-cCCEEEEe-EeEEEEee-CC
Confidence 99999999999999999753 13467888998888888899999999999987 59999976 79999875 55
Q ss_pred CCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecCCCCC
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLP 321 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~ 321 (641)
+|.|+.+ +++ .++|+.|||||||++++|..+++++.++|||+.+++++||.+.+|||+||||+.+....
T Consensus 151 ---~v~Gv~~----~g~--~i~a~~VVLATGG~~~~~~~~~~~~~~tGdg~~~a~~aGA~l~~me~~q~~p~~~~~~~-- 219 (466)
T PRK08401 151 ---KAYGVFL----DGE--LLKFDATVIATGGFSGLFKFTAGSPLNLGTLIGDAVMKGAPARDLEFVQFHPTGFIGKR-- 219 (466)
T ss_pred ---EEEEEEE----CCE--EEEeCeEEECCCcCcCCCCCcCCCCCCCcHHHHHHHHcCCcccCceeeEEecccccCCC--
Confidence 7888875 243 58999999999999999998899999999999999999999999999999998764311
Q ss_pred CCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEeCCCCChhHHHhhC
Q 006532 322 IKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHF 401 (641)
Q Consensus 322 ~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~lD~~~~~~~~~~~~~ 401 (641)
..+++++.++++|+++||.+|+||++ |+.+|+++++++..++.++ .++|+|.++++ .+.+++
T Consensus 220 --------~~~l~~e~~r~~g~ilvN~~G~RF~~------E~~~rd~v~~ai~~~~~~~--~~v~ld~~~~~--~~~~~~ 281 (466)
T PRK08401 220 --------GTYLISEAVRGAGAKLVTGDGERFVN------ELETRDIVARAIYRKMQEG--KGVFLDATGIE--DFKRRF 281 (466)
T ss_pred --------CCeEEeeecccCceEEECCCCCChhc------ccccHHHHHHHHHHHHhcC--CEEEEeCcCHH--HHHHHh
Confidence 14678888999999999999999996 5778999999999998764 47999998763 566789
Q ss_pred hhHHHHHHHcCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHH
Q 006532 402 PNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQP 481 (641)
Q Consensus 402 ~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~ 481 (641)
|.+++.+.+.|+|+.++++++.|..||++|||+||.++||+|||||||||++|+|+||+|||+||||++++|||++||++
T Consensus 282 ~~~~~~~~~~G~D~~~~~i~v~p~~h~t~GGi~vd~~~~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~ 361 (466)
T PRK08401 282 PQIYAFLRKEGIDPSRDLIPVTPIAHYTIGGISVDTFYRTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVART 361 (466)
T ss_pred HHHHHHHHHcCCCcCCcccccccceeecCCCEEECCCCcccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987899999999999999999999999999
Q ss_pred HHHhhhcccccccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHh
Q 006532 482 SIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETY 561 (641)
Q Consensus 482 aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~ 561 (641)
|++.... .... . ..+ ... ..+..+ ++||++||+++||+|++++|+++|.+|++|+++
T Consensus 362 aa~~~~~----~~~~---~--~~~-------~~~--~~~~~~-~~l~~~m~~~~gi~r~~~~l~~~~~~~~~l~~~---- 418 (466)
T PRK08401 362 ISRERPK----LREV---K--EPP-------YHG--YELGDV-DSIREILWNHAGIVRSEESLREGLKKLEGIEAD---- 418 (466)
T ss_pred HhhhCcC----cccc---c--hhh-------hhc--cccccH-HHHHHHHhccceEEECHHHHHHHHHHHHHHHhc----
Confidence 8764110 0000 0 000 000 012223 569999999999999999999999999988531
Q ss_pred hhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCe
Q 006532 562 LFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPT 619 (641)
Q Consensus 562 ~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~ 619 (641)
.+|+++|+++++|||.|+||||+|||+|||++|++|.++.
T Consensus 419 ------------------~~~~~~a~~~~~~al~R~esrG~h~r~D~p~~~~~~~~~~ 458 (466)
T PRK08401 419 ------------------PRLKLLAKGVLECALAREESRGAHYREDFPFMRKEFERPS 458 (466)
T ss_pred ------------------cCHHHHHHHHHHHHHhcCCCccceecCCCCccChhhhccc
Confidence 2578899999999999999999999999999988776665
No 31
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=100.00 E-value=9e-78 Score=664.29 Aligned_cols=515 Identities=21% Similarity=0.243 Sum_probs=389.5
Q ss_pred cEEEECccHHHHHHHHHHH----hcC-CeEEEEecCCCCCccccccC--ceeeccC---CCCCHHHHHHHHHHhccCCCC
Q 006532 84 DFSVIGSGVAGLCYALEVA----KHG-TVAVITKAEPHESNTNYAQG--GVSAVLC---PSDSVESHMQDTIVAGAYLCD 153 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa----~~G-~V~llek~~~~~g~s~~a~g--gi~~~~~---~~d~~~~~~~d~~~~g~~~~~ 153 (641)
||||||||.|||+||+.|+ +.| +|+||||....++++ +++| +++.... ..|+++.++++++..+.+++|
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s~s-~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~d 79 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSGA-VAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLVR 79 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCCCc-cccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCCc
Confidence 8999999999999999998 679 999999998765544 6777 4554443 258999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHcCCccccCC-CCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEE
Q 006532 154 DETVRVVCTEGPDRIRELIAIGASFDRGE-DGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFA 232 (641)
Q Consensus 154 ~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~-~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v 232 (641)
+++++.+++++++.++||.++|++|++.. +|.+. ..+... ....|..+.+.+...+.+ .++++++++.+
T Consensus 80 ~~lV~~lv~~s~~~i~~L~~~Gv~F~~~~~~G~~~--~~g~~~-------~~~gG~~~~r~l~~~l~~-~~~~i~~~~~v 149 (614)
T TIGR02061 80 EDLIFDMARHVDDSVHLFEEWGLPLWIKPEDGKYV--REGRWQ-------IMIHGESYKPIVAEAAKN-ALGDIFERIFI 149 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceecCCCCccc--cCCCcc-------cCcCchhHHHHHHHHHHh-CCCeEEcccEE
Confidence 99999999999999999999999998753 55322 221100 011245566666666665 47899999999
Q ss_pred EEEEecCC--CCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCC---------CcccCccchhHHHHhcCCe
Q 006532 233 IDLLTTLD--GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTT---------NPLVATGDGMAMAHRAQAV 301 (641)
Q Consensus 233 ~~l~~~~~--g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~---------~~~~~~Gdg~~~a~~aGa~ 301 (641)
++|+++++ | +|+||++.+..+|+.+.|.||+|||||||++++|..++ +++.+||||+.||+++||.
T Consensus 150 ~~Ll~d~~~~G---rV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ly~~~~~~~~~~~~~~~~~~TGdGi~mA~~aGA~ 226 (614)
T TIGR02061 150 VKLLLDKNTPN---RIAGAVGFNVRANEVHVFKAKTVIVAAGGAVNVYRPRSVGEGAGRAWYAVWNAGSTYTMCAQAGAE 226 (614)
T ss_pred EEEEecCCCCC---eEEEEEEEEeCCCcEEEEECCEEEECCCccccccCCcccccccccccCCCCcCcHHHHHHHHcCCC
Confidence 99998643 5 89999998877888889999999999999999887432 3788999999999999999
Q ss_pred eeccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccc-------cccC----chhHHH
Q 006532 302 ISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-------AELA----PRDVVA 370 (641)
Q Consensus 302 l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-------~~~~----~r~~~~ 370 (641)
+.+||| ||||+.+..+..+ ....++++| ++++|.+|+|||.+|+|. ++++ |||+++
T Consensus 227 l~dme~-qf~pt~~~~~~~~------~~~~~l~~e------a~l~n~~Gerf~~~~~~~~~~~~~r~~~~~~~~~rd~va 293 (614)
T TIGR02061 227 MTQMEN-RFVPARFKDGYGP------VGAWFLLFK------AKATNGKGEEYCATNRAMLKPYEGRGYAKPHVIPTCLRN 293 (614)
T ss_pred ccCCcc-ceecceeccccCC------CCceEEEee------eEEECCCCCChhhccchhhhhcccccccccCCCcHHHHH
Confidence 999998 9999988643211 111457776 799999999999877653 2333 478999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCC---------------hhHHHhhChhHHHHHH---HcCCCCCCCCeeEeeeeccccC-
Q 006532 371 RSIDDQLKKRNEKYVLLDISHKP---------------TEKILSHFPNIAAECL---KYGLDITSQPIPVVPAAHYMCG- 431 (641)
Q Consensus 371 ~~i~~~~~~~~~~~v~lD~~~~~---------------~~~~~~~~~~~~~~~~---~~G~d~~~~~i~v~p~~~~~~G- 431 (641)
++|+.|+++++ ++||||+++.+ .+.+...+|.....+. ..|+||.++||||.|++||+||
T Consensus 294 rai~~e~~~g~-g~vyLD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~~~ipV~PaaHy~mGg 372 (614)
T TIGR02061 294 HMMLREMREGR-GPIYMDTKEALQDPFATDKKQQKHLEEEAWEDFLDMTVGQANLWAATNVDPEERGSEIMPTEPYLMGS 372 (614)
T ss_pred HHHHHHHHcCC-CCEEeeccccchhhhhhcccccccccHHHHHHhccccHHHHHHHHHcCCCCcCCCcccccccCeecCC
Confidence 99999999864 56999988544 4445556664444333 2599999999999999999999
Q ss_pred -----ceEeC-----------------CCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcc
Q 006532 432 -----GVRAG-----------------LQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKST 489 (641)
Q Consensus 432 -----GI~vD-----------------~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~ 489 (641)
||+|| .+++|+||||||||||+|+|+| |++||||+++.++|..|++.+.....
T Consensus 373 ~~~~~Gi~vd~~~~~~~~~~~~~~~~~~~~~T~i~gLyA~Ge~~~~~~h---~l~~nsl~eg~~ag~~a~~~~~~~~~-- 447 (614)
T TIGR02061 373 HSGCCGIWVSGPEDWVPEEYKVRAAKVYNRMTTVEGLFTCGDGVGASPH---KFSSGSFTEGRIAAKAAVRWILDHKD-- 447 (614)
T ss_pred cccccceeecccccccccccccccccccCCccccCCEEeceecccCcch---hhHHhHHHHHHHHHHHHHHHHHhCCC--
Confidence 99998 9999999999999999988998 58999999866666665554322110
Q ss_pred ccccccc--cccc-ccccCCcc-c---c---c-cchhhhhchHHHHHHHHHHHHhcCccc-----cCHHHHHHHHHHHHH
Q 006532 490 SIDLSAS--NWWT-RTVVPKSL-G---C---N-VMHNILRRTKEVRKELQSIMWRYVGIV-----RSTTSLQTAEWRIDE 553 (641)
Q Consensus 490 ~~~~~~~--~~~~-~~~~~~~~-~---~---~-~~~~~~~~~~~~~~~l~~~m~~~~g~~-----R~~~~L~~al~~l~~ 553 (641)
..+.... .... +...+... . . . ........+.+++++||++||+|+||+ |++++|++||++|++
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~Gi~~~~~~R~~~~L~~al~~l~~ 527 (614)
T TIGR02061 448 FKPEFDATAEELKKEIYRPMENYEVYKNASTAPVVNPNYINPKQGLMRLQKCMDEYGGGVTTYYMTNEALLDTGLKLMAM 527 (614)
T ss_pred CCCCChhHHHHHHHHhhhhHHHHHhhhccccCCCcCccCCCHHHHHHHHHHHHHhhcCccccccccCHHHHHHHHHHHHH
Confidence 0100000 0000 00000000 0 0 0 000000135678899999999999999 999999999999999
Q ss_pred HHHHHHHhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCc--ccccccCCCCCccCCCCCeee-cC--CCccc
Q 006532 554 LEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESR--GLHYMVDFPHVEENKRLPTII-LP--SLVNC 628 (641)
Q Consensus 554 l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESR--G~h~R~D~P~~d~~~~~~~~~-~~--~~~~~ 628 (641)
|++++..+. ..+.+++++++|++|||++|+++++|||+|+||| |+|||+|||++|+++|+++++ +. ++.+.
T Consensus 528 l~~~~~~~~----~~~~~~~~~a~el~n~l~~a~~i~~aal~R~ESR~~G~H~R~DyP~~~d~~w~~~~~~~~~~~~g~~ 603 (614)
T TIGR02061 528 LEEDLEKLA----ARDLHELLRAWELYHRLWTVEAHMQHILFRKETRWPGYYYRADFLGLDDENWKCFVNSKYDPATGET 603 (614)
T ss_pred HHHHHhccc----CCChHHHHHHHHHHHHHHHHHHHHHHHHhCcCcCCCCccccCCCCCCCchhhhceEEEEEcCCCCce
Confidence 988776532 2345788999999999999999999999999999 999999999998877777765 32 22344
Q ss_pred ccccccc
Q 006532 629 TWSSRQL 635 (641)
Q Consensus 629 ~~~~~~~ 635 (641)
+..+.|+
T Consensus 604 ~~~~~~~ 610 (614)
T TIGR02061 604 TIEKKPY 610 (614)
T ss_pred EEEeecc
Confidence 4444443
No 32
>PRK08275 putative oxidoreductase; Provisional
Probab=100.00 E-value=4.4e-77 Score=662.32 Aligned_cols=500 Identities=23% Similarity=0.294 Sum_probs=390.8
Q ss_pred cccccEEEECccHHHHHHHHHHHhc--C-CeEEEEecCCCCCcc-ccccCceeeccCC-CCCHHHHHHHHHHhccCCCCH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNT-NYAQGGVSAVLCP-SDSVESHMQDTIVAGAYLCDD 154 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~--G-~V~llek~~~~~g~s-~~a~ggi~~~~~~-~d~~~~~~~d~~~~g~~~~~~ 154 (641)
+.++||||||||.|||+||+.|++. | +|+||||....++++ ..+.+|++....+ .|+++.|+.|+++.+.+++++
T Consensus 7 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~ 86 (554)
T PRK08275 7 EVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQ 86 (554)
T ss_pred eEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccH
Confidence 4679999999999999999999987 6 999999998754433 3455666654433 589999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEE
Q 006532 155 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 234 (641)
Q Consensus 155 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~ 234 (641)
++++.+++++++.++||+++|++|.+..+|.+.... .|...+. ...+.+|..+...|.+.+++ .||+|++++.+++
T Consensus 87 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~--~~~~~~~-~~~~~~G~~i~~~L~~~~~~-~gv~i~~~~~v~~ 162 (554)
T PRK08275 87 KAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKK--VHHMGSY-VLPMPEGHDIKKVLYRQLKR-ARVLITNRIMATR 162 (554)
T ss_pred HHHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeec--ccccCcc-cccCCChHHHHHHHHHHHHH-CCCEEEcceEEEE
Confidence 999999999999999999999999887666543221 1111110 01234688899999999987 5999999999999
Q ss_pred EEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC------CCC-CCCcccCccchhHHHHhcCCeeecccc
Q 006532 235 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI------YPS-TTNPLVATGDGMAMAHRAQAVISNMEF 307 (641)
Q Consensus 235 l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~------~~~-~~~~~~~~Gdg~~~a~~aGa~l~~~e~ 307 (641)
|++++++ +|.||++.+..+|+...|+||.|||||||++++ |.. +.+++.+||||+.||+++||.+.+|||
T Consensus 163 Li~~~~g---~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~p~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~ 239 (554)
T PRK08275 163 LLTDADG---RVAGALGFDCRTGEFLVIRAKAVILCCGAAGRLGLPASGYLFGTYENPTNAGDGYAMAYHAGAELANLEC 239 (554)
T ss_pred EEEcCCC---eEEEEEEEecCCCcEEEEECCEEEECCCCccccCCCCcCcccccccCCCccccHHHHHHHcCCcccCceE
Confidence 9986456 899999887777887889999999999999986 322 335568999999999999999999999
Q ss_pred ccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEE
Q 006532 308 VQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLL 387 (641)
Q Consensus 308 ~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~l 387 (641)
+||||+.....+ +. ..++++ +.|++++|.+|+|||++|++. ..++++|+.++++++ ++||+
T Consensus 240 ~q~~p~~~~~~~----~~-----~~~~~~---~~g~~lvn~~G~RF~~~~~~~------~~~~~ai~~e~~~g~-g~v~l 300 (554)
T PRK08275 240 FQINPLIKDYNG----PA-----CAYVTG---PLGGYTANAKGERFIECDYWS------GQMMWEFYQELQSGN-GPVFL 300 (554)
T ss_pred EEEeceeecCCC----Cc-----cceecc---ccCcEEeCCCCCccccccCCc------hHHHHHHHHHHHcCC-CcEEE
Confidence 999997653221 10 112221 468899999999999987653 358999999998765 57999
Q ss_pred eCCCCChhHHHhhC---------hhHHHHHHHcCCCCCCCCeeEeeeec-----cccCceEeCCCCCcccCCeeeccccc
Q 006532 388 DISHKPTEKILSHF---------PNIAAECLKYGLDITSQPIPVVPAAH-----YMCGGVRAGLQGETNVRGLYVAGEVA 453 (641)
Q Consensus 388 D~~~~~~~~~~~~~---------~~~~~~~~~~G~d~~~~~i~v~p~~~-----~~~GGI~vD~~~~T~ipGLyAaGe~a 453 (641)
|+++++.+.+. ++ |++...+...|+||.++|+||.|.+| |+||||+||.+++|+|||||||||++
T Consensus 301 d~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~g~D~~~~~i~v~p~~~~~~g~~~~Ggi~~d~~~~t~i~gl~a~Ge~~ 379 (554)
T PRK08275 301 KLDHLAEETIQ-TIETILHTNERPSRGRFHEGRGTDYRQQMVEMHISEIGFCSGHSASGVWVNEKAETTVPGLYAAGDMA 379 (554)
T ss_pred ECCCCCHHHHH-HHHhhhhhcccchHHHHHHHcCCCcccCcccccCCCceeecccccCcEEECCCCccCCCCEEECcccC
Confidence 99999876543 23 33344556789999999999999877 45679999999999999999999987
Q ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhccccc-ccccccccccccCCccccccchhhhhchHHHHHHHHHHHH
Q 006532 454 CTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSID-LSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMW 532 (641)
Q Consensus 454 ~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 532 (641)
|++ +|++.+|++||++||++|++|++..... .+.. ...... ...... ........+.+++++||++||
T Consensus 380 ~~~--------~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~-~~~~~~~~~~~~~~~lq~~m~ 448 (554)
T PRK08275 380 SVP--------HNYMLGAFTYGWFAGENAAEYVAGRDLPEVDAA-QVEAER-ARVLAP-LHREDGLPPAQVEYKLRRLVN 448 (554)
T ss_pred Cch--------hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHH-HHHHHH-HHHhcc-ccccCCCCHHHHHHHHHHHHH
Confidence 433 5899999999999999999987543211 1000 000000 000000 000111357789999999999
Q ss_pred hcCccccCHHHHHHHHHHHHHHHHHHHHhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCccc--ccccCCCC
Q 006532 533 RYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGL--HYMVDFPH 610 (641)
Q Consensus 533 ~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~--h~R~D~P~ 610 (641)
+|+||+|++++|++||++|++|++++.++. ..+.+++++++|++|||++|+++++|||+|+||||+ |||+|||+
T Consensus 449 ~~~gi~R~~~~L~~al~~l~~l~~~~~~~~----~~~~~~~~~~~e~~n~l~~a~~i~~aal~R~ESRG~~~H~R~DyP~ 524 (554)
T PRK08275 449 DYLQPPKVTRKMEIGLQRFAEIREDLERIK----ARDPHELMRALEVSSIRDCAEMAARASLFRTESRWGLYHYRVDFPE 524 (554)
T ss_pred hhcCccccHHHHHHHHHHHHHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCCC
Confidence 999999999999999999999998876532 334578899999999999999999999999999999 99999999
Q ss_pred CccCCCCCeee
Q 006532 611 VEENKRLPTII 621 (641)
Q Consensus 611 ~d~~~~~~~~~ 621 (641)
+|+++|+++++
T Consensus 525 ~~~~~~~~~~~ 535 (554)
T PRK08275 525 RNDAEWFCHTH 535 (554)
T ss_pred CChhhhceeeE
Confidence 99987777655
No 33
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=100.00 E-value=4.6e-76 Score=657.35 Aligned_cols=517 Identities=20% Similarity=0.216 Sum_probs=399.4
Q ss_pred cccccEEEECccHHHHHHHHHHHhc--C-CeEEEEecCCCCCccccccC--ceeeccCCCCCHHHHHHHHHHhccCCCCH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNTNYAQG--GVSAVLCPSDSVESHMQDTIVAGAYLCDD 154 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~--G-~V~llek~~~~~g~s~~a~g--gi~~~~~~~d~~~~~~~d~~~~g~~~~~~ 154 (641)
+.++||||||||+|||+||+.|++. | +|+||||....++++ +++| +++...+..|+++.|+.++++.+.+++++
T Consensus 9 ~~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~-~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~ 87 (608)
T PRK06854 9 EVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGA-VAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVRE 87 (608)
T ss_pred eeEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcc-cccCccccccccccCCCHHHHHHHHHHhccCCCCH
Confidence 4579999999999999999999998 9 999999998755443 4444 35555566789999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEE
Q 006532 155 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 234 (641)
Q Consensus 155 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~ 234 (641)
++++.+++++++.++||+++|++|.+..+|.+.. .+ + .+. ...|..+...|.+.+++..||++++++.|++
T Consensus 88 ~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~--~g-~--~~~----~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~ 158 (608)
T PRK06854 88 DLVYDIARHVDSVVHLFEEWGLPIWKDENGKYVR--RG-R--WQI----MINGESYKPIVAEAAKKALGDNVLNRVFITD 158 (608)
T ss_pred HHHHHHHHhHHHHHHHHHHcCCeeeecCCCCccc--cC-C--ccC----CCChHHHHHHHHHHHHhcCCCEEEeCCEEEE
Confidence 9999999999999999999999998776665432 11 1 111 1357778888888887754599999999999
Q ss_pred EEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCC---------CcccCccchhHHHHhcCCeeecc
Q 006532 235 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTT---------NPLVATGDGMAMAHRAQAVISNM 305 (641)
Q Consensus 235 l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~---------~~~~~~Gdg~~~a~~aGa~l~~~ 305 (641)
|+++ ++ +|+||++.+..+++...|+|+.|||||||++.+|..++ +++.+||||+.||+++||.+.||
T Consensus 159 Li~~-~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~~~~~~~~~~tGDGi~mA~~aGA~l~~m 234 (608)
T PRK06854 159 LLVD-DN---RIAGAVGFSVRENKFYVFKAKAVIVATGGAAGIYRPRSPGEGRGRMWYPPFNTGSGYAMGIRAGAEMTTF 234 (608)
T ss_pred EEEe-CC---EEEEEEEEEccCCcEEEEECCEEEECCCchhhccCCCCcccccccccCCCCCccHHHHHHHHhCCcccCC
Confidence 9976 55 89999887767787778999999999999998876533 36789999999999999999999
Q ss_pred ccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCcccccccccc---------ccCchhHHHHHHHHH
Q 006532 306 EFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA---------ELAPRDVVARSIDDQ 376 (641)
Q Consensus 306 e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~---------~~~~r~~~~~~i~~~ 376 (641)
|| ||||+.+..... |. ..+ .+++|++++|.+|+|||++|+|.. +++|||+++++|+.+
T Consensus 235 e~-qf~p~~~~~~~~---~~-----~~~----~~~~ga~lvn~~GeRFm~~y~p~~~~~~~~~~~~~~~rd~varai~~e 301 (608)
T PRK06854 235 EN-RFIPLRFKDGYG---PV-----GAW----FLLFKAKAVNALGEEYEAKNAAELKKYVPYADYKPIPTCLRNYATVEE 301 (608)
T ss_pred cc-eEeccccCCCCC---Cc-----ccc----eeecCceeeCCCCcccccCCchhhhccccccccCCCChhHHHHHHHHH
Confidence 99 999997643111 11 111 246799999999999999998742 467899999999999
Q ss_pred HHhcCCCeEEEeCCCCC------hhHHHhh---ChhHHHHHHHcCCCCCCCCeeEeeeeccccCc------eEeC-----
Q 006532 377 LKKRNEKYVLLDISHKP------TEKILSH---FPNIAAECLKYGLDITSQPIPVVPAAHYMCGG------VRAG----- 436 (641)
Q Consensus 377 ~~~~~~~~v~lD~~~~~------~~~~~~~---~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GG------I~vD----- 436 (641)
+++++ ++||||+++.+ .+.+.+. +|++...+...|+||.++||||.|++||+||| |.||
T Consensus 302 ~~~g~-g~v~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giD~~~~~ipV~P~~Hy~mGG~~~~~Gi~vd~~~~~ 380 (608)
T PRK06854 302 NKAGR-GPIYMDTEEALQDKHLESELWEDFLDMTPGQALLWAAQNIEPEEENSEIMGTEPYIVGSHSGASGYWVSGPEDW 380 (608)
T ss_pred HhcCC-CCeEEEcccccccchhHHHHHHHHhccCHHHHHHHHHcCCCcccCceeeeccCCeeecCCCCceEEEecCcccc
Confidence 98764 56999998875 2223333 36666666678999999999999999999997 8999
Q ss_pred --------CCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhccc---cccccc--ccc-ccc
Q 006532 437 --------LQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTS---IDLSAS--NWW-TRT 502 (641)
Q Consensus 437 --------~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~---~~~~~~--~~~-~~~ 502 (641)
.+++|+||||||||||+|++.| +++++++. +|++||+.++++++... .+.+.. ... ...
T Consensus 381 ~~~~~~~~~~~~T~v~glyA~Ge~~~~~~~---~l~~~s~~----~g~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (608)
T PRK06854 381 VPEEYKWGYNRMTTVEGLFAAGDVVGGSPH---KFSSGSFA----EGRIAAKAAVRYILDNKDEKPEIDDDQIEELKKEI 453 (608)
T ss_pred cccccccccccccCCCCEEEeeecCCCCcc---hhHHHHHH----HHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHH
Confidence 9999999999999999865544 56666554 67788888877765421 111100 000 000
Q ss_pred ccCCc-cc-------cccchhhhhchHHHHHHHHHHHHhcCccc-----cCHHHHHHHHHHHHHHHHHHHHhhhccCccc
Q 006532 503 VVPKS-LG-------CNVMHNILRRTKEVRKELQSIMWRYVGIV-----RSTTSLQTAEWRIDELEAEWETYLFEHGWEQ 569 (641)
Q Consensus 503 ~~~~~-~~-------~~~~~~~~~~~~~~~~~l~~~m~~~~g~~-----R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~ 569 (641)
..+.. .. .........++.+++.+||++||+|+||+ |++++|++||++|++|++++.... ..+
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~~~~~~R~~~~L~~al~~l~~l~~~~~~~~----~~~ 529 (608)
T PRK06854 454 YAPLERYEEFKDYSTDPDVNPNYISPEQLEERLQKIMDEYAGGISTNYTTNEKLLEIALELLEMLEEDSEKLA----ARD 529 (608)
T ss_pred HhHHhhhhcccccccccccCCCCCCHHHHHHHHHHHHHHhCCCcchhhhhcHHHHHHHHHHHHHHHHHHHhcc----CCC
Confidence 00000 00 00000111246788899999999999998 999999999999999998876531 223
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcccCc--ccccccCCCCCccCCCCCeeec---CCCcccccccccc
Q 006532 570 TFVGLEACEMRNLFCCAKLVVSSALARHESR--GLHYMVDFPHVEENKRLPTIIL---PSLVNCTWSSRQL 635 (641)
Q Consensus 570 ~~~~~~~~e~~~~l~~a~~~~~aal~R~ESR--G~h~R~D~P~~d~~~~~~~~~~---~~~~~~~~~~~~~ 635 (641)
.+++++++|++|||++|+++++|||+||||| |+|||+|||++|+++|++++++ .++.+.+.++.|.
T Consensus 530 ~~~~~~~~el~~~l~~a~~i~~aAl~R~ESR~~G~H~R~DyP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (608)
T PRK06854 530 LHELMRCWELKHRLLVAEAHIRHLLFRKETRWPGYYERADYPGKDDENWKCFVNSRYDPGTGEWTIRKLPY 600 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCcCCCCChhhhcEEEEEEEcCCCCcEEEEEecc
Confidence 5778899999999999999999999999999 9999999999998777777663 2556666665554
No 34
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=100.00 E-value=2e-76 Score=688.06 Aligned_cols=498 Identities=24% Similarity=0.298 Sum_probs=389.7
Q ss_pred CccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCC-CCccccccCceeecc-CCCCCHHHHHHHHHHhccCCCCH
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH-ESNTNYAQGGVSAVL-CPSDSVESHMQDTIVAGAYLCDD 154 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~-~g~s~~a~ggi~~~~-~~~d~~~~~~~d~~~~g~~~~~~ 154 (641)
..+.++||||||||.|||+||+.|++.| +|+||||.... +|++....+|++... ...|+++.|+.|+++.+.+++++
T Consensus 9 ~~~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~~~sg~~~~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~gl~d~ 88 (897)
T PRK13800 9 ALRLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDYVAEITRANDGIVNQ 88 (897)
T ss_pred cceeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccccCCCcccCCchhhhcccCCCccCHHHHHHHHHhhcCCCCCH
Confidence 3456799999999999999999999999 99999999863 334444455664332 33689999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccce-ee-ccCCcHHHHHHHHHHHHHcC---CCcEEEcc
Q 006532 155 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRI-VH-AADMTGREIERALLEAVVSD---PNISVFEH 229 (641)
Q Consensus 155 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~-~~-~~~~~g~~~~~~l~~~~~~~---~gv~i~~~ 229 (641)
+.++.+++++++.++||+++|++|+++.+|.+...... +. .+ ..+.+|..+...|.+.+.+. .+|+++++
T Consensus 89 ~~v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~~-----~~~~~~~~~~tG~~i~~~L~~~l~~~~~~~~i~~~~~ 163 (897)
T PRK13800 89 RTVYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRVH-----RSGSYVLPMPEGKDVKKALYRVLRQRSMRERIRIENR 163 (897)
T ss_pred HHHHHHHHhHHHHHHHHHHcCCceeeCCCCCEeeeeec-----cCCCccccCCCchhHHHHHHHHHHHhhhcCCcEEEec
Confidence 99999999999999999999999998877765433211 11 11 13457888888888877653 37999999
Q ss_pred eEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC------C--CCCCCcccCccchhHHHHhcCCe
Q 006532 230 HFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI------Y--PSTTNPLVATGDGMAMAHRAQAV 301 (641)
Q Consensus 230 ~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~------~--~~~~~~~~~~Gdg~~~a~~aGa~ 301 (641)
+.+++|+++ +| +|+|+++++..+|+.+.|+||+|||||||++++ | ..+++ +.+||||++||+++||.
T Consensus 164 ~~~~~Li~~-~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~p~~~~~~~~~~~-~~~tGDG~amA~raGA~ 238 (897)
T PRK13800 164 LMPVRVLTE-GG---RAVGAAALNTRTGEFVTVGAKAVILATGPCGRLGLPASGYLYGTYEN-PTNAGDGYSMAYHAGAE 238 (897)
T ss_pred eeeEEEEee-CC---EEEEEEEEecCCCcEEEEECCEEEECCCccccCCCCCcccccCccCC-CCcccHHHHHHHHcCCc
Confidence 999999986 66 899999998888999999999999999999987 3 22334 48999999999999999
Q ss_pred eeccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccc-cccccccCchhHHHHHHHHHHHhc
Q 006532 302 ISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPL-YDERAELAPRDVVARSIDDQLKKR 380 (641)
Q Consensus 302 l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~-~~~~~~~~~r~~~~~~i~~~~~~~ 380 (641)
+.||||+||||+.....| .++++.++++|++++|.+|+|||++ |.+ + .+...+..++.++
T Consensus 239 l~~me~vqfhPt~~~~~g------------~~~~~~~~~~G~~lvN~~GeRFm~~~~~~------~-~i~~~i~~ei~~g 299 (897)
T PRK13800 239 LSGIECFQINPLIKDYNG------------PACAYVANPFGGYQVNAQGERFVDSDYWS------G-QMMAEVKREIESA 299 (897)
T ss_pred ccCceeEEeeccccCCCC------------chhheeecccCcEEECCCCCccccCcccc------h-hHHHHHHHHHhcC
Confidence 999999999997664222 1233446678999999999999974 422 2 2344666777665
Q ss_pred CCCeEEEeCCCCChhHHHhhChhHHHH---------HHHcCCCCCCCCeeEee-----eeccccCceEeCCCCCcccCCe
Q 006532 381 NEKYVLLDISHKPTEKILSHFPNIAAE---------CLKYGLDITSQPIPVVP-----AAHYMCGGVRAGLQGETNVRGL 446 (641)
Q Consensus 381 ~~~~v~lD~~~~~~~~~~~~~~~~~~~---------~~~~G~d~~~~~i~v~p-----~~~~~~GGI~vD~~~~T~ipGL 446 (641)
+ ++||||++|++.+.+. +||.+.+. +...|+||.++++++.| ..|++||||+||.+++|+||||
T Consensus 300 ~-g~vyLD~~~l~~e~~~-~l~~~~~~~~~p~~~~~~~~~G~d~~~~~i~v~p~~~~~~~~~~~GGi~vd~~~~T~v~GL 377 (897)
T PRK13800 300 R-GPIYLKVSHLPEETLS-ALESILHTTERPTRGTFHANRGHDYRTHDIEMHISEIGLCSGHSASGVWVDEHARTTVPGL 377 (897)
T ss_pred C-CCEEEECCCCCHHHHH-HHHHhhhhcccchHHHHHHhcCCCcccccceecccccccccCCCcceEEecCCCcccCCCe
Confidence 4 6799999999977665 67665543 34479999999999754 5577889999999999999999
Q ss_pred eecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcccc--cccccccccccccCCccccccc-hhhhhchHHH
Q 006532 447 YVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSI--DLSASNWWTRTVVPKSLGCNVM-HNILRRTKEV 523 (641)
Q Consensus 447 yAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 523 (641)
||||||+|+ ++|++.+|+|||++||++|++|+.+... +.... ...... . ... ..+ ......+.++
T Consensus 378 fAaGE~a~~--------~~nsl~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~-~~~~~~-~-~~~-~~~~~~~~~~~~~~ 445 (897)
T PRK13800 378 YAAGDLACV--------PHNYMIGAFVFGDLAGAHAAGTLAEVPAPGELPAD-QLAEAH-E-LIY-RPLRHPDGPPQPQV 445 (897)
T ss_pred EechhccCc--------chhhhhhHHHhHHHHHHHHHHHHhccCCCCCCCHH-HHHHHH-H-HHh-chhhccCCCChHHH
Confidence 999999863 2589999999999999999998754211 01000 000000 0 000 000 0001234578
Q ss_pred HHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCccc-
Q 006532 524 RKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGL- 602 (641)
Q Consensus 524 ~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~- 602 (641)
+++||++||+|+||+|++++|++||++|++|++++..+. ..+++++++++|++|||++|+++++|||+|+||||+
T Consensus 446 ~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~----~~~~~~l~~~~e~~n~l~~a~~i~~aAl~R~ESRG~~ 521 (897)
T PRK13800 446 EYKLRRFVNDYVAPPKTAAKLSIAVETFERMAAEIAGMG----ARTPHELMRCAEVSFIRDCAEMAARSSLTRTESRWGL 521 (897)
T ss_pred HHHHHHHHHcccCccchHHHHHHHHHHHHHHHHHHHhcC----CCChHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcc
Confidence 999999999999999999999999999999998876532 234688899999999999999999999999999999
Q ss_pred -ccccCCCCCccCCCCCeeec
Q 006532 603 -HYMVDFPHVEENKRLPTIIL 622 (641)
Q Consensus 603 -h~R~D~P~~d~~~~~~~~~~ 622 (641)
|||+|||++||++|++++++
T Consensus 522 ~H~R~DyP~~~d~~w~~~~~~ 542 (897)
T PRK13800 522 YHDRADLPERDDASWGYHLNL 542 (897)
T ss_pred ccccCCCCCCChHhhhhheee
Confidence 99999999999888777654
No 35
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=100.00 E-value=2.9e-76 Score=603.76 Aligned_cols=538 Identities=38% Similarity=0.559 Sum_probs=465.7
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCC--CCCHHHHHHHHHHhccCCCCHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCP--SDSVESHMQDTIVAGAYLCDDETV 157 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~--~d~~~~~~~d~~~~g~~~~~~~~~ 157 (641)
..||-+|||+|.||+.+|+.+++.| +++++.|..+..+.+..++||+++.+.+ .|+++.|+.|+++.+.++++++.+
T Consensus 54 ~~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~p~~s~tvaaqGg~nA~l~~m~~d~~~~h~~dtv~~sd~l~dqd~i 133 (642)
T KOG2403|consen 54 HTYDAVVVGAGGAGLRAARGLAELGEKTAVITKLFPTRSHTVAAQGGINAALGNMGNDNWRWHMYDTVKGSDWLGDQDAI 133 (642)
T ss_pred eeceeEEEeccchhhhhhhhhhhcCceEEEEeccccccccchhhhhhhhhhhccCCCchhhhhhhhccccccccCchhhh
Confidence 4599999999999999999999999 9999999999899999999999998876 489999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCcc--------ccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcc
Q 006532 158 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS--------HHRIVHAADMTGREIERALLEAVVSDPNISVFEH 229 (641)
Q Consensus 158 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~--------~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~ 229 (641)
..+..+.+.++-.++.+|.+|.+.++|++++..+++++ ..|+++..+.+|..+...|+.+..+. +..++-.
T Consensus 134 ~ym~~ea~~a~~el~~~g~~fs~~~dg~i~q~~~gg~s~~~gkggq~~r~~~~Ad~tg~~~~~tL~~~~l~~-~~~~f~~ 212 (642)
T KOG2403|consen 134 HYMCREAPKAVIELENYGMPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRACCVADRTGHALLHTLYGQSLRH-NTSFFVE 212 (642)
T ss_pred hHHHhhcchhHHHHHhccCccccccCCcHHHhhhhccccCcccccccccEEEeecccccHHHhhhHHHHhcc-chhhHHH
Confidence 99999999999999999999999999999999998887 67888899999999999999988875 7777777
Q ss_pred eEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeecccccc
Q 006532 230 HFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQ 309 (641)
Q Consensus 230 ~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q 309 (641)
...++++... + .+.|+++.+..++....++++.+|+||||.++.|...+++...||||.+|+.++|+.+.+|||+|
T Consensus 213 yfa~dll~~~-g---~~~~~va~~~~d~~i~~~r~~~ti~a~gg~G~~y~s~t~~~t~TgdG~a~~~ra~~~l~d~efvq 288 (642)
T KOG2403|consen 213 YFALDLLMSQ-G---ECVGVIALNLEDGTIHRFRAKNTILATGGYGRAYFSCTSAHTCTGDGNAMASRAGAPLSDMEFVQ 288 (642)
T ss_pred HHHHHHHHhc-c---CceEEEEEEeecccceeeeeeeeEEEEeccceEEEEeccCeeEccCCCeEEeeccCCCcccceee
Confidence 7778888764 5 57889888888999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCcccccccccc-ccCchhHHHHHHHHHHHhcC-----CC
Q 006532 310 FHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRDVVARSIDDQLKKRN-----EK 383 (641)
Q Consensus 310 ~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~-~~~~r~~~~~~i~~~~~~~~-----~~ 383 (641)
|||+.+.+.| .+++|..+++||+++|..|+|||..|.+.. ++++||++++++..++.+++ .+
T Consensus 289 fhpt~i~g~G------------cliteg~rgeGG~l~n~~~erfme~y~~~akdla~rdvvsrs~tmei~~grg~g~~kd 356 (642)
T KOG2403|consen 289 FHPTGIYGAG------------CLITEGVRGEGGILINSNGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPNKD 356 (642)
T ss_pred eeeecccccc------------eeeeecccccccceeeccceeeccccccchhhcchhhhhhhhhhhhhHhhcccCCCCC
Confidence 9999987653 578999999999999999999999999875 89999999999999988743 36
Q ss_pred eEEEeCCCCChhHHHhhChhHHH-HHHHcCCCCCCCCeeEeeeeccccCceEeCCCC----------CcccCCeeecccc
Q 006532 384 YVLLDISHKPTEKILSHFPNIAA-ECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQG----------ETNVRGLYVAGEV 452 (641)
Q Consensus 384 ~v~lD~~~~~~~~~~~~~~~~~~-~~~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~----------~T~ipGLyAaGe~ 452 (641)
.+|+++.+.+++.++.++|.+.+ .+...|+|.+++|+||.|..||.||||.++.++ .+.|||||||||+
T Consensus 357 ~~~l~l~h~p~e~~~~~~p~is~ta~i~agvdVt~epiPv~ptvhy~~ggi~t~~~g~~~~~~~~g~d~vvpGL~a~GEa 436 (642)
T KOG2403|consen 357 HVYLQLSHLPPEPLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYNGEVLTIREVGQDQVVPGLYACGEA 436 (642)
T ss_pred ccchhhccCChhhhcccCCCcchhhhhHhhcCccccccccCCCcccccCccccCCccceeeeccccccccccceeehhHH
Confidence 79999999999999999998866 456679999999999999999999999988877 4689999999999
Q ss_pred cCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhccc-ccccccccccccccCCccccccchhhhhchHHHHHHHHHHH
Q 006532 453 ACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTS-IDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIM 531 (641)
Q Consensus 453 a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m 531 (641)
+|.++||+||||.|||++.+|||+..|.+++...+... .++-....+.+.... ...-+..+......++|.+||+.|
T Consensus 437 ac~svHGANRLgaNSLLdlvvfgraca~~ia~~~~pg~~~~~~~~~~g~~sv~~--ld~lr~~~gsi~TselRl~MQksM 514 (642)
T KOG2403|consen 437 ACASVHGANRLGANSLLDLVVFGRACALSIAEELRPGDKVPPLASNAGEESVAN--LDKLRFADGSIRTSELRLEMQKTM 514 (642)
T ss_pred HHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcccchHHH--HHhhhcccCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999887653221 100000000000000 000000111245789999999999
Q ss_pred HhcCccccCHHHHHHHHHHHHHHHHHHHHhh-hccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCC
Q 006532 532 WRYVGIVRSTTSLQTAEWRIDELEAEWETYL-FEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPH 610 (641)
Q Consensus 532 ~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~ 610 (641)
|++++|+|....|+++..+|.+|..+++.+. .+.+...+.++.+.+||+||+.+|...+.+|..||||||+|+|+|||.
T Consensus 515 qnhaaVFR~g~~LqEG~~kIskl~~~~k~lktfDrgmvWNsdLVETLELqNLl~cA~qTi~~AeaRkESRGAHAReDy~~ 594 (642)
T KOG2403|consen 515 QKHAAVFRVGSVLQEGCRKISKLYGDFKDLKTFDRGMVWNSDLVETLELQNLLLCALQTIYSAEARKESRGAHAREDFPV 594 (642)
T ss_pred hhcceEEEechHHHHHHHHHHHHHhHHhhhccccccceechhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhccccc
Confidence 9999999999999999999999999999876 555633478899999999999999999999999999999999999999
Q ss_pred CccCCCCCeee--cC-CCcccccccccccc
Q 006532 611 VEENKRLPTII--LP-SLVNCTWSSRQLHK 637 (641)
Q Consensus 611 ~d~~~~~~~~~--~~-~~~~~~~~~~~~~~ 637 (641)
++|++|+++++ ++ +..+++|.-+|++.
T Consensus 595 R~DehWrKHTlsy~~~~tg~Vtl~YRpVid 624 (642)
T KOG2403|consen 595 RIDEHWRKHTLSYWDVGTGKVTLEYRPVID 624 (642)
T ss_pred chhhhhccceeeeecCCCceEEEEEeeccc
Confidence 99996666554 33 55579999988764
No 36
>PRK06175 L-aspartate oxidase; Provisional
Probab=100.00 E-value=1.4e-65 Score=552.88 Aligned_cols=428 Identities=39% Similarity=0.662 Sum_probs=364.0
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~ 159 (641)
.++||||||+|.|||+||+.|+ .| +|+||||....+|+|.+++||++... ..++++.++.|+++.+.+.+++++++.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~-~~d~~~~~~~d~~~~g~~~~d~~lv~~ 80 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVAR-NKDDITSFVEDTLKAGQYENNLEAVKI 80 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCC-CCCCHHHHHHHHHHHhCCCCCHHHHHH
Confidence 4689999999999999999985 68 99999999999999999999998554 467899999999999999999999999
Q ss_pred HHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006532 160 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 239 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~ 239 (641)
+++++++.++||+++|++|....+ .+.+..+++|+..|+++..+.+|..++..|.+.++++.||+|++++.+++|+.+
T Consensus 81 ~~~~s~e~i~wL~~~Gv~f~~~~~-~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~- 158 (433)
T PRK06175 81 LANESIENINKLIDMGLNFDKDEK-ELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEN- 158 (433)
T ss_pred HHHHHHHHHHHHHHcCCccccCCC-ceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEec-
Confidence 999999999999999999987643 344456788999999998888999999999988876569999999999999976
Q ss_pred CCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecCCC
Q 006532 240 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEG 319 (641)
Q Consensus 240 ~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g 319 (641)
++ +|.||++.+ +++.+.|+||.|||||||++++|..++++..++|||+.|++++|+.+.+|+|+|+||+.+...+
T Consensus 159 ~~---~v~Gv~~~~--~g~~~~i~Ak~VILAtGG~~~l~~~~~~~~~~tGdg~~ma~~~Ga~l~~m~~~q~~p~~~~~~~ 233 (433)
T PRK06175 159 DN---TCIGAICLK--DNKQINIYSKVTILATGGIGGLFKNSTNQRIITGDGIAIAIRNNIKIKDLDYIQIHPTAFYEET 233 (433)
T ss_pred CC---EEEEEEEEE--CCcEEEEEcCeEEEccCcccccCcCcCCCCCcchHHHHHHHHcCCCCcCCceEEEeceEeccCC
Confidence 55 799988754 4555679999999999999999998889999999999999999999999999999999776422
Q ss_pred CCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEeCCCCChhHHHh
Q 006532 320 LPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILS 399 (641)
Q Consensus 320 ~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~lD~~~~~~~~~~~ 399 (641)
.. ...+++++.++++|+++||.+|+||++ |+.||+++++++.+++.+.+..++|+|.++.+.+.+..
T Consensus 234 ~~-------~~~~l~~~~~~~~g~ilVN~~G~RF~~------E~~~~~~~~~ai~~~~~~~~~~~v~~D~~~~~~~~~~~ 300 (433)
T PRK06175 234 IE-------GKKFLISESVRGEGGKLLNSKGERFVD------ELLPRDVVTKAILEEMKKTGSNYVYLDITFLDKDFLKN 300 (433)
T ss_pred CC-------CcceEeehhhcCCceEEECCCCCChhh------ccccHHHHHHHHHHHHHhcCCCeEEEecccCcHHHHHH
Confidence 10 114778888899999999999999997 56789999999999987765568999999999888888
Q ss_pred hChhHHHHHHHcCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHH
Q 006532 400 HFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAV 479 (641)
Q Consensus 400 ~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag 479 (641)
++|+++..+.+.|+|+.++++++.|+.||++|||+||.++||+|||||||||++|+|+||+||++||||++|+|||++||
T Consensus 301 ~~~~~yn~~~~~G~D~~~~~i~v~p~~h~t~GGi~vd~~~~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag 380 (433)
T PRK06175 301 RFPTIYEECLKRGIDITKDAIPVSPAQHYFMGGIKVDLNSKTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGA 380 (433)
T ss_pred HHHHHHHHHHHhCcCCCCCcEEEEcceeeecCCEEECCCccccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred HHHHHhhhcccccccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCccccCHHHHHHHHH
Q 006532 480 QPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEW 549 (641)
Q Consensus 480 ~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~ 549 (641)
++|+..+...... . ...+ ........+.++++++|+.. |.|..+.|++++.
T Consensus 381 ~~a~~~~~~~~~~-------~-~~~~---------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 431 (433)
T PRK06175 381 EKINSEIDNIKLN-------I-TKVY---------TLKHDVEYYSLLNKKIIIKE--IEKLRGDLKDELV 431 (433)
T ss_pred HHHHHhhhccccc-------c-cccc---------ccccchhHHHHHHHHHHHHH--HHhhHHHHHHHhh
Confidence 9987644221100 0 0000 00012334456677787776 8888888877664
No 37
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=100.00 E-value=1.3e-50 Score=389.36 Aligned_cols=373 Identities=31% Similarity=0.421 Sum_probs=295.7
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeecc-------CCCCCHHHHHHHHHHhccCCCCHH
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGAYLCDDE 155 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~-------~~~d~~~~~~~d~~~~g~~~~~~~ 155 (641)
.|+|||+|.|||+|+..+-..| .|+|+||....+|+|..+..||+... ...|+|+.++.|++..++....|+
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence 6999999999999999999998 99999999999999999999998654 347999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHH-cCCccccCCCCCcccccCCCccccceeecc--CCcHHHHHHHHHHHHHcC-----CCcEEE
Q 006532 156 TVRVVCTEGPDRIRELIA-IGASFDRGEDGNLHLAREGGHSHHRIVHAA--DMTGREIERALLEAVVSD-----PNISVF 227 (641)
Q Consensus 156 ~~~~~~~~~~~~i~~l~~-~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~--~~~g~~~~~~l~~~~~~~-----~gv~i~ 227 (641)
+++.++.++..+++||.. .+++++ .+...|||+.+|..... ...|.+++.+|..++++. .-++|.
T Consensus 91 Lm~~La~~S~~AvewL~~ef~lkld-------~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~ 163 (477)
T KOG2404|consen 91 LMEKLAANSASAVEWLRGEFDLKLD-------LLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKIL 163 (477)
T ss_pred HHHHHHhcCHHHHHHHhhhcccchH-------HHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhh
Confidence 999999999999999985 677665 34567899999976532 346788888888776652 258899
Q ss_pred cceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC-------C------CCCCCcccCccchhHH
Q 006532 228 EHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI-------Y------PSTTNPLVATGDGMAM 294 (641)
Q Consensus 228 ~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~-------~------~~~~~~~~~~Gdg~~~ 294 (641)
.++.|++|+.+ +| +|.||+..|. +|+...+.++.||+|||||+.. | ..++|-...||||+.|
T Consensus 164 ~nskvv~il~n-~g---kVsgVeymd~-sgek~~~~~~~VVlatGGf~ysd~~lLKey~pel~~lpTTNG~~~tGDgqk~ 238 (477)
T KOG2404|consen 164 LNSKVVDILRN-NG---KVSGVEYMDA-SGEKSKIIGDAVVLATGGFGYSDKELLKEYGPELFGLPTTNGAQTTGDGQKM 238 (477)
T ss_pred hcceeeeeecC-CC---eEEEEEEEcC-CCCccceecCceEEecCCcCcChHHHHHHhChhhccCCcCCCCcccCcHHHH
Confidence 99999999954 67 8999999874 6788889999999999999851 2 1577888999999999
Q ss_pred HHhcCCeeeccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHH
Q 006532 295 AHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSID 374 (641)
Q Consensus 295 a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~ 374 (641)
....|+.++||+.+|.||+.+.++.++..-+ .||..|++||.|++++|..|+||.+ |+..||.+.-.|.
T Consensus 239 l~klga~liDmd~vqvhptgfidpndr~~~w-----KfLAAEalRG~GaiLl~s~GrRF~n------ELg~RDyvTgei~ 307 (477)
T KOG2404|consen 239 LMKLGASLIDMDQVQVHPTGFIDPNDRTALW-----KFLAAEALRGLGAILLNSTGRRFGN------ELGTRDYVTGEIQ 307 (477)
T ss_pred HHHhCccccccceeEecccCccCCCCchhHH-----HHHHHHHhccCceEEEeccchhhhc------ccccchhhhHhHH
Confidence 9999999999999999999998765432211 5788999999999999999999998 6778888887776
Q ss_pred HHHHhcCCCeEEEeCCCCChhHH------------HhhChhHHHHHHHcCCC---------------------CC-----
Q 006532 375 DQLKKRNEKYVLLDISHKPTEKI------------LSHFPNIAAECLKYGLD---------------------IT----- 416 (641)
Q Consensus 375 ~~~~~~~~~~v~lD~~~~~~~~~------------~~~~~~~~~~~~~~G~d---------------------~~----- 416 (641)
+-..-.....+++=+.....+.+ .+++ ...+++...+++ |.
T Consensus 308 kl~~P~ednrallVmnea~~e~~~n~inFY~~K~l~kK~-~~~el~s~ln~t~sel~ttl~eY~~~~~g~~~D~fgrk~f 386 (477)
T KOG2404|consen 308 KLKCPIEDNRALLVMNEANYEAFGNNINFYMFKKLFKKY-ESAELASALNITESELKTTLEEYSKSFTGKSEDPFGRKVF 386 (477)
T ss_pred hhcCCcccceeEEEecHhHHHHHhhhhhhHhHHHHHHHh-hHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCCCcCCCccc
Confidence 52111011234443332211111 1111 122333333322 11
Q ss_pred -------CCC---eeEeeeeccccCceEeCCCCC------cccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHH
Q 006532 417 -------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQ 480 (641)
Q Consensus 417 -------~~~---i~v~p~~~~~~GGI~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~ 480 (641)
+++ -+|.|..||+|||++||+..| ..|.|||||||++ ||+||+|||+|+||.+|+||||.||+
T Consensus 387 ~~s~is~t~~v~vgeVvPvvHyTMGGvkid~ksrVi~~ng~vi~GlfAAGEvs-GGvHGaNRLgGsSLLeCVVFGr~Ag~ 465 (477)
T KOG2404|consen 387 PVSDISPTETVYVGEVVPVVHYTMGGVKIDEKSRVIDKNGKVIVGLFAAGEVS-GGVHGANRLGGSSLLECVVFGRTAGK 465 (477)
T ss_pred cCCCCCccceeEEEEEeeeEEEeccceEechhhhhhccCCcEeeeeeEcceec-cccccccccCcccceeeeeecccchh
Confidence 112 268899999999999998877 3688999999998 89999999999999999999999987
Q ss_pred H
Q 006532 481 P 481 (641)
Q Consensus 481 ~ 481 (641)
.
T Consensus 466 ~ 466 (477)
T KOG2404|consen 466 A 466 (477)
T ss_pred h
Confidence 3
No 38
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=100.00 E-value=7.7e-49 Score=431.47 Aligned_cols=375 Identities=30% Similarity=0.444 Sum_probs=292.8
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeecc-------CCCCCHHHHHHHHHHhccC
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGAY 150 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~-------~~~d~~~~~~~d~~~~g~~ 150 (641)
++.++||||||+|+||++||+.|++.| +|+||||....+|++.++.|+++... +..++++.++.++++.+.+
T Consensus 58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~ 137 (506)
T PRK06481 58 LKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGG 137 (506)
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCC
Confidence 446899999999999999999999999 99999999988888888888876543 2367889999999999999
Q ss_pred CCCHHHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccC--CcHHHHHHHHHHHHHcCCCcEEEc
Q 006532 151 LCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAAD--MTGREIERALLEAVVSDPNISVFE 228 (641)
Q Consensus 151 ~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~--~~g~~~~~~l~~~~~~~~gv~i~~ 228 (641)
..++++++.+++++.+.++||+++|++|... ...++++.+|..++.+ ..+..++..|.+.+++ .|+++++
T Consensus 138 ~~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~-------~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~-~gv~i~~ 209 (506)
T PRK06481 138 TNDKALLRYFVDNSASAIDWLDSMGIKLDNL-------TITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQE-RKIPLFV 209 (506)
T ss_pred CCCHHHHHHHHhccHHHHHHHHHcCceEeec-------ccCCCCCCCceeccCCCCCChHHHHHHHHHHHHH-cCCeEEe
Confidence 9999999999999999999999999998642 1223444455444332 3467788999998887 5999999
Q ss_pred ceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC------C------CCCCCcccCccchhHHHH
Q 006532 229 HHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI------Y------PSTTNPLVATGDGMAMAH 296 (641)
Q Consensus 229 ~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~------~------~~~~~~~~~~Gdg~~~a~ 296 (641)
++.|++|+.+ ++ +|.|+.+.. .+++...|+|+.||+||||++.. | ..+.+++.++|||+.|++
T Consensus 210 ~t~v~~l~~~-~g---~V~Gv~~~~-~~g~~~~i~a~~VVlAtGG~~~n~~m~~~~~p~~~~~~~~~~~g~tGdGi~ma~ 284 (506)
T PRK06481 210 NADVTKITEK-DG---KVTGVKVKI-NGKETKTISSKAVVVTTGGFGANKDMIAKYRPDLKGYVTTNQEGSTGDGIKMIE 284 (506)
T ss_pred CCeeEEEEec-CC---EEEEEEEEe-CCCeEEEEecCeEEEeCCCcccCHHHHHHhCccccCCccCCCCCCChHHHHHHH
Confidence 9999999875 56 899998754 34566689999999999999874 1 124567789999999999
Q ss_pred hcCCeeeccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHH
Q 006532 297 RAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQ 376 (641)
Q Consensus 297 ~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~ 376 (641)
++||.+.+|+++|+||+..... .+++.+.+++.++++||.+|+||+++ ..+++.+++++..+
T Consensus 285 ~aGA~~~~~~~~~~~p~~~~~~------------~~~~~~~~~~~~~i~Vn~~G~RF~nE------~~~~~~~~~~~~~~ 346 (506)
T PRK06481 285 KLGGTTVDMDQIQIHPTVQQSK------------SYLIGEAVRGEGAILVNQKGKRFGNE------LDTRDKVSAAINKL 346 (506)
T ss_pred HcCCCccCchhhhhCCCccCCC------------cceehhhccCCceEEECCCCCCCCCC------CccHHHHHHHHHhC
Confidence 9999999999999998754321 33445556678899999999999984 45667777766654
Q ss_pred HHhcCCCeEEEeCCCCC----hhHHH-----hhChhHHHHHHHcCCC--------------------------------C
Q 006532 377 LKKRNEKYVLLDISHKP----TEKIL-----SHFPNIAAECLKYGLD--------------------------------I 415 (641)
Q Consensus 377 ~~~~~~~~v~lD~~~~~----~~~~~-----~~~~~~~~~~~~~G~d--------------------------------~ 415 (641)
. ++..++++|....+ .+... .+.+++.+++++.|+| +
T Consensus 347 ~--~~~~~~i~D~~~~~~~~~~~~~~~~g~~~kadTleeLA~~~gid~~~L~~tv~~yN~~~~~g~D~~fgr~~~~~~~i 424 (506)
T PRK06481 347 P--EKYAYVVFDSGVKDRVKAIAQYEEKGFVEEGKTIDELAKKINVPAETLTKTLDTWNKAVKNKKDEAFGRTTGMDNDL 424 (506)
T ss_pred c--CCcEEEEECHHHHhhhhhhHHHHhCCcEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCC
Confidence 3 22346677754211 00000 1223444444333332 2
Q ss_pred CCCC---eeEeeeeccccCceEeCCCCC------cccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhh
Q 006532 416 TSQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 486 (641)
Q Consensus 416 ~~~~---i~v~p~~~~~~GGI~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~ 486 (641)
.+.| +++.|..|+|+|||+||+++| ++|||||||||++ +|+||.||++|+++++|++|||+||++|++++
T Consensus 425 ~~~PfYai~~~p~~~~T~GGl~in~~~qVld~~g~pI~GLYAaGe~~-gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~ 503 (506)
T PRK06481 425 STGPYYAIKIAPGIHYTMGGVKINTNTEVLKKDGSPITGLYAAGEVT-GGLHGENRIGGNSVADIIIFGRQAGTQSAEFA 503 (506)
T ss_pred cCCCEEEEEEecceeecccCeEECCCceEEcCCCCEeCCeeeceecc-ccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 2345 789999999999999999998 6999999999998 79999999999999999999999999999886
Q ss_pred h
Q 006532 487 K 487 (641)
Q Consensus 487 ~ 487 (641)
+
T Consensus 504 ~ 504 (506)
T PRK06481 504 K 504 (506)
T ss_pred h
Confidence 4
No 39
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=100.00 E-value=1.7e-46 Score=445.85 Aligned_cols=393 Identities=30% Similarity=0.427 Sum_probs=301.7
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccC-------CCCCHHHHHHHHHHhc-c
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC-------PSDSVESHMQDTIVAG-A 149 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~-------~~d~~~~~~~d~~~~g-~ 149 (641)
.+.++||||||+|.||++||++|++.| +|+||||....+|++.+++|+++.... ..|+++.+..+++..+ .
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~~~~~ 485 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGKG 485 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHHHHhccC
Confidence 456899999999999999999999999 999999999888998888888876542 3578888888887765 5
Q ss_pred CCCCHHHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCC-------cHHHHHHHHHHHHHcC-
Q 006532 150 YLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADM-------TGREIERALLEAVVSD- 221 (641)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~-------~g~~~~~~l~~~~~~~- 221 (641)
+.+++++++.+++++++.++||+++|++|... ...++++++|..+..+. .|..+...|.+.+++.
T Consensus 486 ~~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~-------~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~ 558 (1167)
T PTZ00306 486 GHCDPGLVKTLSVKSADAISWLSSLGVPLTVL-------SQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKL 558 (1167)
T ss_pred CCCCHHHHHHHHHhhHHHHHHHHHcCCCceee-------eccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhc
Confidence 78999999999999999999999999999642 23456677776654321 2566778887777642
Q ss_pred -CCcEEEcceEEEEEEecCC----C-CCceEEEEEEEec--CCCeEEEEEcCEEEEcCCCCCcCC----------C----
Q 006532 222 -PNISVFEHHFAIDLLTTLD----G-PDAVCHGVDTLNV--ETQEVVRFISKVTLLASGGAGHIY----------P---- 279 (641)
Q Consensus 222 -~gv~i~~~~~v~~l~~~~~----g-~~~~v~Gv~~~~~--~~g~~~~i~Ak~VVlAtGg~~~~~----------~---- 279 (641)
.||+|++++++++|+++++ | ...+|+||++.+. .+|+.+.|+||+||||||||+++. +
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~N~e~~~m~~~y~p~~~~ 638 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSNDHTPNSLLREYAPQLSG 638 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcccCccHHHHHHHhCccccC
Confidence 4999999999999998642 1 1127999999764 267788999999999999999753 1
Q ss_pred -CCCCcccCccchhHHHHhcCCeeeccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccc
Q 006532 280 -STTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD 358 (641)
Q Consensus 280 -~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~ 358 (641)
.+++++.++|||+.||+++||.+.+|+++|+||+.+..+..+..+ ..++..+.+++.++++||.+|+||++
T Consensus 639 ~~~~~~~~~tGDGi~mA~~aGA~l~~m~~~~~~p~~~~~~~~~~~~-----~~~~~~~~~~~~g~ilVN~~GkRF~n--- 710 (1167)
T PTZ00306 639 FPTTNGPWATGDGVKLARKLGATLVDMDKVQLHPTGLIDPKDPSNR-----TKYLGPEALRGSGGVLLNKNGERFVN--- 710 (1167)
T ss_pred CCCCCCCCcccHHHHHHHHcCCcCcCccceeEcceeecCCCCCCCc-----ccceeeehhcCCceEEECCCCCCccc---
Confidence 244667899999999999999999999999999865432211111 13445556677789999999999997
Q ss_pred cccccCchhHHHHHHHHHHHhc----CC--CeEEEeCCCCCh---h---------HHHhhChhHHHHHHHcCCCC-----
Q 006532 359 ERAELAPRDVVARSIDDQLKKR----NE--KYVLLDISHKPT---E---------KILSHFPNIAAECLKYGLDI----- 415 (641)
Q Consensus 359 ~~~~~~~r~~~~~~i~~~~~~~----~~--~~v~lD~~~~~~---~---------~~~~~~~~~~~~~~~~G~d~----- 415 (641)
|+.+++.+++++..+.... +. .++.+|...... . .+..+.+++.+++.+.|+|+
T Consensus 711 ---E~~~~~~~~~ai~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~~~~g~~~kADTleELA~~~gid~~~L~a 787 (1167)
T PTZ00306 711 ---ELDLRSVVSQAIIAQGNEYPGSGGSKFAYCVLNEAAAKLFGKNSLGFYWKRLGLFQRVDDVKGLAKLIGCPVENLHR 787 (1167)
T ss_pred ---ccCcHHHHHHHHHhhcccccccccCceEEEEEchHHHhhhhhhhhhhhhhhcCeEEEeCCHHHHHHHhCCCHHHHHH
Confidence 4567788888888765421 11 233344321100 0 01123567777777776664
Q ss_pred ----------------------------CCCC---eeEeeeeccccCceEeCCCCC--------------cccCCeeecc
Q 006532 416 ----------------------------TSQP---IPVVPAAHYMCGGVRAGLQGE--------------TNVRGLYVAG 450 (641)
Q Consensus 416 ----------------------------~~~~---i~v~p~~~~~~GGI~vD~~~~--------------T~ipGLyAaG 450 (641)
.+.| +++.|..++|+||+.||.++| ++||||||||
T Consensus 788 TV~rYN~~~~~G~d~~f~~~~~~p~~~~~~~PfYA~~~~p~~~~T~GGl~in~~~qVLd~dg~~~~~~~~~pIpGLYAAG 867 (1167)
T PTZ00306 788 TLETYERLSTKKVACPLTGKVVFPCVVGTQGPYYVAFVTPSIHYTMGGCLISPSAEMQMEDNSVNIFEDRRPILGLFGAG 867 (1167)
T ss_pred HHHHHHHHHhcCCCCccCCCccCCCcCCCCCCEEEEEEecccccccCCeEECCCceEEeccCccccccCCceeCceEecc
Confidence 1233 478899999999999998766 3799999999
Q ss_pred cccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhccc
Q 006532 451 EVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTS 490 (641)
Q Consensus 451 e~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~ 490 (641)
|++ +|+||.+|++|+++++|++||++||++|+++++...
T Consensus 868 e~~-gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~~~~~ 906 (1167)
T PTZ00306 868 EVT-GGVHGGNRLGGNSLLECVVFGKIAGDRAATILQKKK 906 (1167)
T ss_pred eec-cccccCCCCchhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 998 799999999999999999999999999999886654
No 40
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=100.00 E-value=2e-45 Score=397.99 Aligned_cols=365 Identities=37% Similarity=0.538 Sum_probs=286.9
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccC-------CCCCHHHHHHHHHHhccCCCCHH
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC-------PSDSVESHMQDTIVAGAYLCDDE 155 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~-------~~d~~~~~~~d~~~~g~~~~~~~ 155 (641)
||||||+|+|||+||+.|+++| +|+||||....+|++.++.|++..... ..|+++.++.+++..+.+..+++
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 8999999999999999999999 999999999888888888887776542 24779999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCcccc-ceee-ccCC------cHHHHHHHHHHHHHcCCCcEEE
Q 006532 156 TVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHH-RIVH-AADM------TGREIERALLEAVVSDPNISVF 227 (641)
Q Consensus 156 ~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~-r~~~-~~~~------~g~~~~~~l~~~~~~~~gv~i~ 227 (641)
+++.+++++.+.++||+++|++|..+.++.+.....+.+... +.+. ..+. .+..+...|.+.+++. |++|+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~-gv~i~ 159 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEA-GVDIR 159 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHT-TEEEE
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhc-Ceeee
Confidence 999999999999999999999999877776666666766666 5554 3343 7899999999999984 89999
Q ss_pred cceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc----------CCCCCCCcccCccchhHHHHh
Q 006532 228 EHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH----------IYPSTTNPLVATGDGMAMAHR 297 (641)
Q Consensus 228 ~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~----------~~~~~~~~~~~~Gdg~~~a~~ 297 (641)
.++++++|+++ ++ +|+||++.+..+|+.+.|+|++|||||||+++ .+..+.+++.++|||+.|+++
T Consensus 160 ~~~~~~~Li~e-~g---~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~~~~~~~~~~~~~~~~~~~~~~~Gdg~~ma~~ 235 (417)
T PF00890_consen 160 FNTRVTDLITE-DG---RVTGVVAENPADGEFVRIKAKAVILATGGFGGELLRQYYPPGPYAMTTGPPGNTGDGIAMALR 235 (417)
T ss_dssp ESEEEEEEEEE-TT---EEEEEEEEETTTCEEEEEEESEEEE----BGGHHHHHH-GGGGSSSBSSGTTTSSHHHHHHHH
T ss_pred ccceeeeEEEe-CC---ceeEEEEEECCCCeEEEEeeeEEEeccCccccccccccccccccccccCCCCcccCchhhhhc
Confidence 99999999997 66 89999999888899999999999999999997 445667788999999999999
Q ss_pred cCCeeec--cccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHH-
Q 006532 298 AQAVISN--MEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSID- 374 (641)
Q Consensus 298 aGa~l~~--~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~- 374 (641)
+||.+.+ |++.+++|..+.....+ . ..++...+...++++||.+|+||++ |..+++.+..++.
T Consensus 236 aGa~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~g~i~vn~~G~Rf~~------e~~~~~~~~~~~~~ 301 (417)
T PF00890_consen 236 AGAALSNDPMEFIQWGPPSVPGIRDP---S-----GILITEALPGPGGIWVNADGERFMN------EDASYDDVAQAILQ 301 (417)
T ss_dssp TTCCEESTTTTCEEEEEEEETSTCCT---T-----TSBHHTHHHHTT-EEEETTSSBTHG------GGS-HHHHHHHHH-
T ss_pred cCccccCccchhhccCCccccccccc---c-----cchhhhhhccceeEEEcCCCcCccc------ccccccHHHHHHHH
Confidence 9999999 99999999887632211 0 1223344566789999999999996 4456777888887
Q ss_pred HHHHhcCC-CeEEEeCCC-CChhHHHhhChhHHHHHHHcCCC--------CCCCC-------eeEeeeeccccCceEeCC
Q 006532 375 DQLKKRNE-KYVLLDISH-KPTEKILSHFPNIAAECLKYGLD--------ITSQP-------IPVVPAAHYMCGGVRAGL 437 (641)
Q Consensus 375 ~~~~~~~~-~~v~lD~~~-~~~~~~~~~~~~~~~~~~~~G~d--------~~~~~-------i~v~p~~~~~~GGI~vD~ 437 (641)
.++..... ..+|+++++ ++.+.+.+.+..+.+.+.. |.| +.+.+ +++.|..++++|||+||+
T Consensus 302 ~~~~~~~~~~~~~~~~~~g~~~~~L~~tv~~yn~~~~~-g~d~~f~~~~~~~~~~~~~pfya~~~~~~~~~t~GGl~vd~ 380 (417)
T PF00890_consen 302 REIREPRGDAYVYLIFDGGIDPEGLAATVERYNEECEA-GVDEDFGRGIDPLKRPIPGPFYAVEVTPGIHYTMGGLKVDE 380 (417)
T ss_dssp HHHHTTTSECBEEEEETTTSHHHHHHHHCHHHHHHHHH-TSTTTTS-STTTTTSEEESSEEEEEEEEEEEEES-EEEBET
T ss_pred HhhhcccCCcceEEeeccccChhhhhhhhhHHHHhhhc-ccccccccccccccCcccccccccccccccceeeEEeeeCc
Confidence 44544433 467898887 8888888888777666654 333 33333 348899999999999999
Q ss_pred CCCc------ccCCeeecccccCCCCCCCCccchhhh
Q 006532 438 QGET------NVRGLYVAGEVACTGLHGANRLASNSL 468 (641)
Q Consensus 438 ~~~T------~ipGLyAaGe~a~~g~~Ga~rl~g~sl 468 (641)
++|+ +|||||||||++|+++||+++++|++|
T Consensus 381 ~~~vl~~~g~pIpGLyAaGe~~gg~~~g~~~~gG~~l 417 (417)
T PF00890_consen 381 DAQVLDADGQPIPGLYAAGEAAGGGVHGAYRGGGNGL 417 (417)
T ss_dssp TSEEETTTCEEEEEEEE-SCCEEESSSTTS--TTHHH
T ss_pred CcCccCCCCCEeCCEEEEEcccccccCCccCCcccCC
Confidence 9997 999999999999789999999999986
No 41
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=100.00 E-value=1.2e-45 Score=401.90 Aligned_cols=366 Identities=36% Similarity=0.513 Sum_probs=281.5
Q ss_pred cEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCccccccCceeeccC-------CCCCHHHHHHHHHHhccCCCCH
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNTNYAQGGVSAVLC-------PSDSVESHMQDTIVAGAYLCDD 154 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~s~~a~ggi~~~~~-------~~d~~~~~~~d~~~~g~~~~~~ 154 (641)
||||||+|+||++||+.|+++| +|+||||....+|+|.++.|+++.... ..++++.++.++++.+.+.+++
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 8999999999999999999998 899999999888888888888875542 3578899999999988899999
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccC--CcHHHHHHHHHHHHHcCCCcEEEcceEE
Q 006532 155 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAAD--MTGREIERALLEAVVSDPNISVFEHHFA 232 (641)
Q Consensus 155 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~--~~g~~~~~~l~~~~~~~~gv~i~~~~~v 232 (641)
++++.+++++.+.++|++ +++.+.... ....+++..+|..++.+ ..+..+...|.+.+++ .|++++++++|
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~-~gv~i~~~~~v 153 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDD-----LIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKK-EGIDTRLNSKV 153 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeecc-----ccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHH-cCCEEEeCCEe
Confidence 999999999999999999 666664321 11234455555544433 4577899999999987 59999999999
Q ss_pred EEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc------CC-C-----CCCCcccCccchhHHHHhcCC
Q 006532 233 IDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH------IY-P-----STTNPLVATGDGMAMAHRAQA 300 (641)
Q Consensus 233 ~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~------~~-~-----~~~~~~~~~Gdg~~~a~~aGa 300 (641)
++|+.++++ +|.|+++.+ .+++...+.+|.||+|||+++. .| | .+.+++.++|||+.|++++||
T Consensus 154 ~~l~~~~~g---~v~Gv~~~~-~~g~~~~~~a~~VVlAtGg~~~n~~m~~~~~p~~~~~~~~~~~~~tGdG~~ma~~aGa 229 (439)
T TIGR01813 154 EDLIQDDQG---TVVGVVVKG-KGKGIYIKAAKAVVLATGGFGSNKEMIAKYDPTLKGLGSTNQPGATGDGLLMAEKIGA 229 (439)
T ss_pred eEeEECCCC---cEEEEEEEe-CCCeEEEEecceEEEecCCCCCCHHHHHHhCCCcCCCCcCCCCCCchHHHHHHHHcCC
Confidence 999987556 799998865 4566667899999999999997 23 2 345677899999999999999
Q ss_pred eeeccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhc
Q 006532 301 VISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKR 380 (641)
Q Consensus 301 ~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~ 380 (641)
.+.+|+++|+||......+ .++..+.++..++++||.+|+||+++ ..+++.+++++..+...
T Consensus 230 ~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~i~vn~~G~RF~~E------~~~~~~~~~~~~~~~~~- 291 (439)
T TIGR01813 230 ALVDMDYIQAHPTASPDEG-----------GFLISEAVRGYGAILVNKTGERFMNE------LATRDTVSDAILAQPGK- 291 (439)
T ss_pred CccCCchhheecccccCCc-----------ceeehhhcccCcEEEECCCCCCcccc------CCcHHHHHHHHHhCCCC-
Confidence 9999999999987553211 23334445567789999999999984 45666677776655421
Q ss_pred CCCeEEEeCCCCCh----hHH-----HhhChhHHHHHHHcCC--------------------CC------------CCCC
Q 006532 381 NEKYVLLDISHKPT----EKI-----LSHFPNIAAECLKYGL--------------------DI------------TSQP 419 (641)
Q Consensus 381 ~~~~v~lD~~~~~~----~~~-----~~~~~~~~~~~~~~G~--------------------d~------------~~~~ 419 (641)
..++++|...... +.. ..+.+++.+++.+.|+ |+ .+.|
T Consensus 292 -~~~~i~d~~~~~~~~~~~~~~~~g~~~~adtleeLa~~~g~~~~~l~~tv~~yN~~~~~g~D~~f~r~~~~~~~i~~~P 370 (439)
T TIGR01813 292 -SAYLIFDDDVYKKAEMVDNYYRLGVAYKGDSLEELAKQFGIPAAALKKTVKDYNEYVASGKDTPFGRPMDMPDDLSKSP 370 (439)
T ss_pred -ceEEEECHHHHHhhhhHHHHHhcCcEEEeCCHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCCCCC
Confidence 2345566321110 000 0122344444444333 32 2456
Q ss_pred ---eeEeeeeccccCceEeCCCCC------cccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHH
Q 006532 420 ---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQ 480 (641)
Q Consensus 420 ---i~v~p~~~~~~GGI~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~ 480 (641)
+++.|..++|+|||+||+++| ++|||||||||++ +|+||.+|++|+++++|++||++||+
T Consensus 371 fya~~~~~~~~~t~GGl~~d~~~~vl~~~g~~IpGLyAaG~~~-gg~~g~~~~~G~~~~~~~~~GriAg~ 439 (439)
T TIGR01813 371 YYAIKVTPGVHHTMGGVKINTKAEVLDAQGKPIPGLFAAGEVT-GGVHGANRLGGNAIADCIVFGRIAGE 439 (439)
T ss_pred EEEEEEEcCccccccCeEECCCCeEECCCCCEecccEEeeecc-cccCCCCCCchhhhhhhhhhhHhhcC
Confidence 789999999999999999999 5899999999998 79999999999999999999999984
No 42
>PRK07121 hypothetical protein; Validated
Probab=100.00 E-value=6.9e-45 Score=400.42 Aligned_cols=373 Identities=24% Similarity=0.269 Sum_probs=276.3
Q ss_pred CccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeec--------cCCCCCHHHHHHHHHHhc
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAV--------LCPSDSVESHMQDTIVAG 148 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~--------~~~~d~~~~~~~d~~~~g 148 (641)
.++.++||||||+|.|||+||++|++.| +|+||||....+|++.++.|.+... .+..|+++.++.++.+.+
T Consensus 16 ~~~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~~sgG~~~~~~g~~~q~~~g~~d~~~~~~~~~~~~~ 95 (492)
T PRK07121 16 SWDDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATALSGGVIYLGGGTAVQKAAGFEDSPENMYAYLRVAV 95 (492)
T ss_pred ccCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCeEEEeCCCcHHHHhcCCCCCHHHHHHHHHHHh
Confidence 3456899999999999999999999999 9999999998888887765444322 134688999998888888
Q ss_pred cCCCCHHHHHHHHHHhHHHHHHHHHcCCccccCCCCCccc--------ccCC----------Cccccceeecc---CC-c
Q 006532 149 AYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHL--------AREG----------GHSHHRIVHAA---DM-T 206 (641)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~--------~~~g----------g~~~~r~~~~~---~~-~ 206 (641)
.+.+++++++.+++++++.++||+++|++|.....+.+.. ...+ .+..+|..... .. .
T Consensus 96 ~~~~d~~l~~~~~~~s~~~i~wl~~~Gv~f~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (492)
T PRK07121 96 GPGVDEEKLRRYCEGSVEHFDWLEGLGVPFERSFFPEKTSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRVQGPGDSGG 175 (492)
T ss_pred CCCCCHHHHHHHHHccHHHHHHHHHcCcEEEeccCCCcccCCCCCcccccchhhcchhhhhccCCcccceecCCCCCCCc
Confidence 8899999999999999999999999999997542221100 0000 01112222211 11 4
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEc-CEEEEcCCCCCcC------C-
Q 006532 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAGHI------Y- 278 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGg~~~~------~- 278 (641)
+..+...|.+.+++ .|++|+++++|++|+++++| +|.||++.+ +++...|+| |.|||||||++.. |
T Consensus 176 g~~~~~~L~~~~~~-~gv~i~~~~~v~~l~~~~~g---~v~Gv~~~~--~~~~~~i~a~k~VVlAtGg~~~N~em~~~~~ 249 (492)
T PRK07121 176 GAMLMDPLAKRAAA-LGVQIRYDTRATRLIVDDDG---RVVGVEARR--YGETVAIRARKGVVLAAGGFAMNREMVARYA 249 (492)
T ss_pred hHHHHHHHHHHHHh-CCCEEEeCCEEEEEEECCCC---CEEEEEEEe--CCcEEEEEeCCEEEECCCCcCcCHHHHHHhC
Confidence 77899999998887 59999999999999987556 799998853 466678999 9999999999862 1
Q ss_pred C-----CCCCcccCccchhHHHHhcCCeeeccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCcc
Q 006532 279 P-----STTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERF 353 (641)
Q Consensus 279 ~-----~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf 353 (641)
+ .+.+++.++|||+.||+++||.+.+|+++|+++.... | .. + .++++||.+|+||
T Consensus 250 p~~~~~~~~~~~~~tGdG~~ma~~aGa~l~~~~~~~~~~~~~~-------~------~~-----~--~~~i~Vn~~G~RF 309 (492)
T PRK07121 250 PAYAGGLPLGTTGDDGSGIRLGQSAGGATAHMDQVFAWRFIYP-------P------SA-----L--LRGILVNARGQRF 309 (492)
T ss_pred CcccCCcCCCCCCCccHHHHHHHHhCCccccCchhhhhCcccC-------C------CC-----c--CCeEEECCCCCEe
Confidence 1 3445678999999999999999999999987543211 1 00 0 2579999999999
Q ss_pred ccccccccccCchhHHHHHHHHHHHhcCCCeEEEeCCCCChh------H------HHhhChhHHHHHHHcCCCCC-----
Q 006532 354 MPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTE------K------ILSHFPNIAAECLKYGLDIT----- 416 (641)
Q Consensus 354 ~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~lD~~~~~~~------~------~~~~~~~~~~~~~~~G~d~~----- 416 (641)
+++. .+++.++.++..+. ++..++++|....... . ...+.+++.+++++.|+|+.
T Consensus 310 ~nE~------~~~~~~~~~~~~~~--~~~~~~i~D~~~~~~~~~~~~~~~~~~~~~~~kadtleeLA~~~gid~~~l~~t 381 (492)
T PRK07121 310 VNED------TYGARIGQFILEQP--GGTAYLIVDEALFEEARAQLRPQIDGRTPGAWKAETVEELARKLGIPPGGLQAT 381 (492)
T ss_pred ecCC------CcHHHHHHHHHhcc--CCcEEEEEeHHHHhhhccccccccccccCcccccCCHHHHHHHhCCCHHHHHHH
Confidence 9853 34555666654432 2234566665422100 0 01134567777776666532
Q ss_pred -----------------C----------CC---eeEee----eeccccCceEeCCC-CC------cccCCeeecccccCC
Q 006532 417 -----------------S----------QP---IPVVP----AAHYMCGGVRAGLQ-GE------TNVRGLYVAGEVACT 455 (641)
Q Consensus 417 -----------------~----------~~---i~v~p----~~~~~~GGI~vD~~-~~------T~ipGLyAaGe~a~~ 455 (641)
+ .| +++.| ..++|+||++||++ +| ++|||||||||++ +
T Consensus 382 v~~yN~~~~~G~D~~f~r~~~~l~pi~~~PfYa~~~~~~~~~~~~~T~GGl~id~~~~qVld~~g~pI~GLYAaG~~~-g 460 (492)
T PRK07121 382 VDAYNRAAAGGEDPPFHKQPEWLRPLDTGPFAAIDLSLGKAPTPGFTLGGLRVDEDTGEVLRADGAPIPGLYAAGRCA-S 460 (492)
T ss_pred HHHHHHHhhcCCCcccCCCcccccccccCCeEEEEEecccCCcceeeccCeeECCCcceEECCCCCCcCceEeccccc-c
Confidence 1 12 34555 89999999999999 98 4799999999997 7
Q ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHHh
Q 006532 456 GLHGANRLASNSLLEALVFARRAVQPSIDH 485 (641)
Q Consensus 456 g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~ 485 (641)
|+||.+|++|+++++|++|||+||++|++.
T Consensus 461 g~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 461 GIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred cCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 999999999999999999999999998764
No 43
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=100.00 E-value=2e-43 Score=389.27 Aligned_cols=379 Identities=22% Similarity=0.251 Sum_probs=274.8
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccC-ceeecc-------CCCCCHHHHHHHHHHhcc
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG-GVSAVL-------CPSDSVESHMQDTIVAGA 149 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~g-gi~~~~-------~~~d~~~~~~~d~~~~g~ 149 (641)
++.++||||||+| |||+||++|++.| +|+||||....+|++.++.| ++.... +..++++..+.++.....
T Consensus 4 ~d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~~~~g~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 82 (513)
T PRK12837 4 WDEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTAYSGGGGMWFPCNPVLRRAGTDDTIEDALEYYHAVVG 82 (513)
T ss_pred CCCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcceecCCCceeccCCChhhhhcCcchHHHHHHHHHHHHhc
Confidence 3458999999999 9999999999999 99999999887888877665 453321 124667776666666666
Q ss_pred CCCCHHHHHHHHHHhHHHHHHHHH-cCCccccCC----CCCcccccCCCc--cccc------------eee---------
Q 006532 150 YLCDDETVRVVCTEGPDRIRELIA-IGASFDRGE----DGNLHLAREGGH--SHHR------------IVH--------- 201 (641)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~i~~l~~-~Gv~~~~~~----~g~~~~~~~gg~--~~~r------------~~~--------- 201 (641)
...++++++.+++++.+.++||++ .|++|.... .+.......+++ ..++ .++
T Consensus 83 ~~~~~~l~~~~~~~s~~~i~wl~~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (513)
T PRK12837 83 DRTPRDLQETYVRGGAPLIEYLEQDEHFEFAELPWPDYFGKAPKARADGQRHIVPKPLPAAALGELREQIRGPLDTERLG 162 (513)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCCcCCCCCCcccCCcceeecCCCChHHhchhHHhccCccchhhhc
Confidence 678999999999999999999987 599986421 110000000110 0000 000
Q ss_pred -c-cC--CcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcC-EEEEcCCCCCc
Q 006532 202 -A-AD--MTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISK-VTLLASGGAGH 276 (641)
Q Consensus 202 -~-~~--~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak-~VVlAtGg~~~ 276 (641)
. .. ..|..++..|.+.+.++.|++|++++.+++|+.+ ++ +|+||++.. +|+.+.|+|+ .|||||||+++
T Consensus 163 ~~~~~~~~~G~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~-~g---~v~Gv~~~~--~g~~~~i~A~k~VIlAtGG~~~ 236 (513)
T PRK12837 163 APPPDYLVGGRALIGRFLAALARFPNARLRLNTPLVELVVE-DG---RVVGAVVER--GGERRRVRARRGVLLAAGGFEQ 236 (513)
T ss_pred cCCCCcccccHHHHHHHHHHHHhCCCCEEEeCCEEEEEEec-CC---EEEEEEEEE--CCcEEEEEeCceEEEeCCCccC
Confidence 0 00 1356788888887776569999999999999986 66 899998753 5777889995 89999999987
Q ss_pred C------CC------CCCCcccCccchhHHHHhcCCeeeccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcE
Q 006532 277 I------YP------STTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGI 344 (641)
Q Consensus 277 ~------~~------~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~ 344 (641)
+ |. .+.+++.+||||+.||+++||.+.+|++.|++|......+. . ...+...+++
T Consensus 237 n~~m~~~~~~~~~~~~~~~~~~~tGDGi~ma~~aGA~l~~m~~~~~~p~~~~~~~~----------~---~~~~~~~~~i 303 (513)
T PRK12837 237 NDDMRARYGVPGSARDTMGGPGNTGLAHQAAIAVGADTDLMDQAWWSPGLTHPDGR----------S---AFALWFTGGI 303 (513)
T ss_pred CHHHHHHhccccccCCCCCCCCCCcHHHHHHHHcCCCccccccccccceeecCCCc----------c---eeccccCceE
Confidence 5 42 45677889999999999999999999999999865432110 0 1112335789
Q ss_pred EEeCCCCccccccccccccCchhHHHHHHHHHHHhcC---CCeEEEeCCCC-------------ChhH-HH----hhChh
Q 006532 345 LYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRN---EKYVLLDISHK-------------PTEK-IL----SHFPN 403 (641)
Q Consensus 345 ~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~---~~~v~lD~~~~-------------~~~~-~~----~~~~~ 403 (641)
+||.+|+||++ |..+++.+++++..+...+. ..++.+|.... ..+. +. .+.++
T Consensus 304 ~Vn~~GkRF~n------E~~~~~~~~~a~~~~~~~~~~~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kaDT 377 (513)
T PRK12837 304 FVDQHGERFVN------ESAPYDRLGRAVIAEMDSGGMTLPFWMIYDDREGEVPPVKATNVSMVETAQYVAAGLWRTADT 377 (513)
T ss_pred EECCCCCCccc------CCCcHhHHHHHHHhhcccCCCCcceEEEECchhhhccCccccCCCCcCcHHHhhcCCeeecCC
Confidence 99999999997 45678888888887764332 13455665310 0011 11 13456
Q ss_pred HHHHHHHcCCCCC----------------------C---------------------CC---eeEeeeeccccCceEeCC
Q 006532 404 IAAECLKYGLDIT----------------------S---------------------QP---IPVVPAAHYMCGGVRAGL 437 (641)
Q Consensus 404 ~~~~~~~~G~d~~----------------------~---------------------~~---i~v~p~~~~~~GGI~vD~ 437 (641)
+.+++++.|+|+. + .| +++.|..++|+||++||+
T Consensus 378 leELA~k~gid~~~L~~Tv~~yN~~~~~g~D~dFgr~~~~~~~~~~~~~~~l~~i~~~PfYA~~~~p~~~~T~GGl~in~ 457 (513)
T PRK12837 378 LEELAAKIGVPADALTATVARFNGFAAAGVDEDFGRGDEAYDRAFSGGASPLVPIDTPPFHAAAFGVSDLGTKGGLRTDT 457 (513)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCccCCCCcchhhccccCCcccceecccCCeEEEEeccccceeCCCceECC
Confidence 7777666665421 1 12 466778899999999999
Q ss_pred CCC------cccCCeeecccccCCCCCCCCccc-hhhhHHHHHHHHHHHHHHHH
Q 006532 438 QGE------TNVRGLYVAGEVACTGLHGANRLA-SNSLLEALVFARRAVQPSID 484 (641)
Q Consensus 438 ~~~------T~ipGLyAaGe~a~~g~~Ga~rl~-g~sl~~a~v~G~~Ag~~aa~ 484 (641)
++| ++|||||||||++ +|++|.+|++ |+++++|++||++||++|+.
T Consensus 458 ~~qVl~~~g~pIpGLYAaG~~~-gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 458 AARVLDTDGRPIPGLYAAGNTM-AAVSGTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred CceEECCCCCEeCCceeccccc-ccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 998 5899999999998 7999988885 89999999999999999864
No 44
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=2e-43 Score=390.51 Aligned_cols=383 Identities=19% Similarity=0.263 Sum_probs=274.4
Q ss_pred CccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeecc-------CCCCCHHHHHHHHHHhcc
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGA 149 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~-------~~~d~~~~~~~d~~~~g~ 149 (641)
..+.+|||||||+| +|++||+.+++.| +|+||||....+|++.++.|+++... +..|+++..+.++.....
T Consensus 12 ~~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~gG~~~~~~~~~~~~~g~~ds~e~~~~y~~~~~~ 90 (564)
T PRK12845 12 VRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSGGAFWLPASPVLDEAGAGDTLERARTYLDSVVG 90 (564)
T ss_pred CCCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCcCCCEecCChHHHHHhCcchhHHHHHHHHHHHhC
Confidence 45668999999999 8999999999999 99999999888898888877776432 236899999999998888
Q ss_pred CCCCHHHHHHHHHHhHHHHHHHHH-cCCccccCCC-CCcccccCCCccccceeec-------------------------
Q 006532 150 YLCDDETVRVVCTEGPDRIRELIA-IGASFDRGED-GNLHLAREGGHSHHRIVHA------------------------- 202 (641)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~i~~l~~-~Gv~~~~~~~-g~~~~~~~gg~~~~r~~~~------------------------- 202 (641)
+..++++++.+++++++.++||++ .|+.|..... ..++....+++...|.+++
T Consensus 91 ~~~~~~li~~~~~~~~~~i~wl~~~~gv~~~~~~~~~d~~~~~~g~~~~gr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 170 (564)
T PRK12845 91 GSAPAERSAAFLDNGSATVDMLRRTTPMRFFWARGYSDYHPEQPGGSAAGRTCECRPFDTAVLGEYRPRLRPGVMEVSIP 170 (564)
T ss_pred CCCCHHHHHHHHHhhHHHHHHHHhcCCceEEECCCCCCCCCCCCCCCCCCCcccCCCCChhHhhhHHHhcCCcccccccc
Confidence 889999999999999999999998 6777642211 0111111111110000000
Q ss_pred -----------------------------------------cCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006532 203 -----------------------------------------ADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 203 -----------------------------------------~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
....|..++..|.+.+++ .||+|+.++++++|+.+ +|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~L~~~~~~-~Gv~i~~~t~v~~Li~~-~g 248 (564)
T PRK12845 171 MPVTGADYRWLNLMARVPRKALPRIAKRLAQGVGGLALGRRYAAGGQALAAGLFAGVLR-AGIPIWTETSLVRLTDD-GG 248 (564)
T ss_pred ccccHHHHHHHHHhhcCcchhHHHHHHHHHHHHhhhccCCcccCChHHHHHHHHHHHHH-CCCEEEecCEeeEEEec-CC
Confidence 012366788889888887 59999999999999975 56
Q ss_pred CCceEEEEEEEecCCCeEEEEEc-CEEEEcCCCCCcC------C-C------CCCCcccCccchhHHHHhcCCeeecccc
Q 006532 242 PDAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAGHI------Y-P------STTNPLVATGDGMAMAHRAQAVISNMEF 307 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGg~~~~------~-~------~~~~~~~~~Gdg~~~a~~aGa~l~~~e~ 307 (641)
+|+||++.+ +|+.+.|.| |.||||||||+++ | + .+.+++.+||||+.|++++||.+.+|++
T Consensus 249 ---~V~GV~~~~--~g~~~~i~a~kaVILAtGGf~~n~em~~~y~p~~~~~~~~~~~~~~tGDGi~ma~~aGA~l~~m~~ 323 (564)
T PRK12845 249 ---RVTGAVVDH--RGREVTVTARRGVVLAAGGFDHDMEMRWKFQSESLGEHASLGAEGNTGDAIRIAQDLGAAIGLMDQ 323 (564)
T ss_pred ---EEEEEEEEE--CCcEEEEEcCCEEEEecCCccccHHHHHHhCCCccccccccCCCCCCCHHHHHHHHcCCCccCCcc
Confidence 899998754 455666777 7999999999985 3 2 2567789999999999999999999999
Q ss_pred ccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHh---cCCCe
Q 006532 308 VQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKK---RNEKY 384 (641)
Q Consensus 308 ~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~---~~~~~ 384 (641)
.|+||+.....+.. | .+++.+. ...|+++||.+|+||+++. .++..+.+++..+... +...+
T Consensus 324 ~~~~p~~~~~~~~~--~------~~~~~~~-~~~g~i~VN~~G~RF~nE~------~~~~~~~~~~~~~~~~~~~~~~~~ 388 (564)
T PRK12845 324 AWWFPAVAPLPGGA--P------AVMLAER-SLPGSLIVDQTGRRFVNEA------TDYMSFGQRVLERERAGDPVESMW 388 (564)
T ss_pred ceEecccccCCCCC--c------ccchhhh-ccCceEEECCCCCEecCCC------CchhHHHHHHHhhhccCCCCceEE
Confidence 99999765322110 1 1222221 1257899999999999853 2344455555433211 11134
Q ss_pred EEEeCCCCC--------------hhHHH-----hhChhHHHHHHHcCCC--------------------CC--C------
Q 006532 385 VLLDISHKP--------------TEKIL-----SHFPNIAAECLKYGLD--------------------IT--S------ 417 (641)
Q Consensus 385 v~lD~~~~~--------------~~~~~-----~~~~~~~~~~~~~G~d--------------------~~--~------ 417 (641)
+.+|..... ..... .+..++.+++++.|+| ++ +
T Consensus 389 ~I~D~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~k~gid~~~L~~TV~~yN~~~~~G~D~dFgr~~~~~~ 468 (564)
T PRK12845 389 IVFDQQYRNSYVFAAELFPRMPIPQAWYDAGIAHRADSLADLARKIGVPVDTFVATMRRFNEMAAAGVDSDFGRGRSAYD 468 (564)
T ss_pred EEECchhhhhcccccccCCCCcccHhHhhcCceEecCCHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCchhh
Confidence 445543110 01111 1334555555555443 11 1
Q ss_pred -------------------CC---eeEeeeeccccCceEeCCCCC------cccCCeeecccccCCCCCCCCccc-hhhh
Q 006532 418 -------------------QP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLA-SNSL 468 (641)
Q Consensus 418 -------------------~~---i~v~p~~~~~~GGI~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~-g~sl 468 (641)
.| +++.|..++|+||++||+++| ++||||||||+++ +|++|.+|++ |+++
T Consensus 469 ~~~gd~~~~~~~~l~pi~~gPfYA~~~~p~~~~T~GGl~id~~~qVLd~dg~pI~GLYAaG~~~-gg~~g~~Y~g~G~~l 547 (564)
T PRK12845 469 RYYGDPTVTPNPNLRPLDKGPFYAVKMVLSDLGTCGGLRADERARVLREDGSVIDGLYAIGNTA-ANAFGATYPGAGATI 547 (564)
T ss_pred hhcCCCcCCCCcccCccccCCEEEEEeccccceecCCeeECCCceEECCCCCCCCCeeEeeeec-cccccCCCCCcchhh
Confidence 12 567788999999999999998 5899999999998 7999999997 9999
Q ss_pred HHHHHHHHHHHHHHHH
Q 006532 469 LEALVFARRAVQPSID 484 (641)
Q Consensus 469 ~~a~v~G~~Ag~~aa~ 484 (641)
++|++||++||++|++
T Consensus 548 g~a~~fGriAg~~aa~ 563 (564)
T PRK12845 548 GQGLVYGYIAAQDAAA 563 (564)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999864
No 45
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=100.00 E-value=3.6e-43 Score=385.10 Aligned_cols=378 Identities=22% Similarity=0.255 Sum_probs=268.8
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC--CCCccccccCceeeccC-------CCCCHHHHHHHHHHhccC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP--HESNTNYAQGGVSAVLC-------PSDSVESHMQDTIVAGAY 150 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~--~~g~s~~a~ggi~~~~~-------~~d~~~~~~~d~~~~g~~ 150 (641)
.++||||||+|+||++||+.|++.| +|+||||... .+|++.++.| +..... ..++++.++.++++.+.+
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRN-LRCMHDAPQDVLVGAYPEEEFWQDLLRVTGG 81 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCc-eeeeCCCchhhccccccHHHHHHHHHHhhCC
Confidence 4689999999999999999999999 9999999874 5677766655 543322 235778899999998888
Q ss_pred CCCHHHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcce
Q 006532 151 LCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHH 230 (641)
Q Consensus 151 ~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~ 230 (641)
..++++++.+++++.+.++|+.++|++|.....+..... ..+..+.. .+..+...|.+.+++ .|+++++++
T Consensus 82 ~~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~------~~~~~~~g--~g~~l~~~l~~~~~~-~gv~i~~~t 152 (466)
T PRK08274 82 RTDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVA------RTNAFFWG--GGKALVNALYRSAER-LGVEIRYDA 152 (466)
T ss_pred CCCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccC------CCCeeecC--CHHHHHHHHHHHHHH-CCCEEEcCC
Confidence 999999999999999999999999999976544432210 11111111 267788899988887 599999999
Q ss_pred EEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC-------CCC------CCCcccCccchhHHHHh
Q 006532 231 FAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI-------YPS------TTNPLVATGDGMAMAHR 297 (641)
Q Consensus 231 ~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~-------~~~------~~~~~~~~Gdg~~~a~~ 297 (641)
+|++|+.+ ++ +|+|+++.+ .+++...|+|+.|||||||++.. ++. +.+++.++|||+.|+++
T Consensus 153 ~v~~l~~~-~g---~v~gv~~~~-~~g~~~~i~a~~VIlAtGg~~~n~~~~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~ 227 (466)
T PRK08274 153 PVTALELD-DG---RFVGARAGS-AAGGAERIRAKAVVLAAGGFESNREWLREAWGQPADNFLVRGTPYNQGDLLKALLD 227 (466)
T ss_pred EEEEEEec-CC---eEEEEEEEc-cCCceEEEECCEEEECCCCCCCCHHHHHhhcCCchhhceecCCCCcccHHHHHHHH
Confidence 99999986 56 799998743 45666689999999999999863 221 24567899999999999
Q ss_pred cCCeeeccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCch--hHHHHHHHH
Q 006532 298 AQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPR--DVVARSIDD 375 (641)
Q Consensus 298 aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r--~~~~~~i~~ 375 (641)
+||.+.+ ++.|+||+.+.... |.. .... ........++++||.+|+||+++... +.++ ......+..
T Consensus 228 ~Ga~~~~-~~~~~~~~~~~~~~----~~~--~~~~-~~~~~~~~~~i~vn~~G~RF~nE~~~---~~~~~~~~~~~~~~~ 296 (466)
T PRK08274 228 AGADRIG-DPSQCHAVAIDARA----PLY--DGGI-CTRIDCVPLGIVVNRDGERFYDEGED---FWPKRYAIWGRLVAQ 296 (466)
T ss_pred cCCCccC-CccceeeEeecCCC----Ccc--CCcc-eeeecccceEEEEcCCCcEEEecCCc---cccchHHHHHHHHHc
Confidence 9999876 56788887653211 100 0011 11112234579999999999986421 1111 122222222
Q ss_pred HHHhcCCCeEEEeCCCCCh---hHH-HhhChhHHHHHHHcCCCC----------------------------------CC
Q 006532 376 QLKKRNEKYVLLDISHKPT---EKI-LSHFPNIAAECLKYGLDI----------------------------------TS 417 (641)
Q Consensus 376 ~~~~~~~~~v~lD~~~~~~---~~~-~~~~~~~~~~~~~~G~d~----------------------------------~~ 417 (641)
+ .....++++|...... ... ..+..++.+++++.|+|+ .+
T Consensus 297 ~--~~~~~~~i~d~~~~~~~~~~~~~~~~adtleeLA~~~gi~~~~l~~tv~~yN~~~~~g~~~~~~~d~~~~~~~~~~~ 374 (466)
T PRK08274 297 Q--PGQIAYQIFDAKAIGRFMPPVFPPIQADTLEELAEKLGLDPAAFLRTVAAFNAAVRPGPFDPTVLDDCGTEGLTPPK 374 (466)
T ss_pred C--CCceEEEEeCchhHhhcCcccCCccccCCHHHHHHHhCcCHHHHHHHHHHHHHhccccCCCcccccccccccCCCCc
Confidence 1 1112345556432210 000 012234444444444332 11
Q ss_pred ----CC--------eeEeeeeccccCceEeCCCCCc------ccCCeeecccccCCC-CCCCCccchhhhHHHHHHHHHH
Q 006532 418 ----QP--------IPVVPAAHYMCGGVRAGLQGET------NVRGLYVAGEVACTG-LHGANRLASNSLLEALVFARRA 478 (641)
Q Consensus 418 ----~~--------i~v~p~~~~~~GGI~vD~~~~T------~ipGLyAaGe~a~~g-~~Ga~rl~g~sl~~a~v~G~~A 478 (641)
.| +++.|..|+|+||++||+++|+ +|||||||||++ +| +||+||++|+++++|+|||++|
T Consensus 375 ~~~~~~i~~~Pfya~~~~p~~~~t~GGl~~d~~~~vl~~~g~~I~GLYAaGe~~-gg~~~g~~y~~g~~l~~~~~~G~ia 453 (466)
T PRK08274 375 SHWARPIDTPPFYAYPVRPGITFTYLGLKVDEDARVRFADGRPSPNLFAAGEMM-AGNVLGKGYPAGVGLTIGAVFGRIA 453 (466)
T ss_pred ccccCccCCCCeEEEEeccceeeecccEEECCCceEECCCCCCCCCceeccccc-ccccccCCCccccchhhhhhhHHHH
Confidence 12 3889999999999999999996 899999999998 57 9999999999999999999999
Q ss_pred HHHHHHhhh
Q 006532 479 VQPSIDHKK 487 (641)
Q Consensus 479 g~~aa~~~~ 487 (641)
|++|+++++
T Consensus 454 g~~aa~~~~ 462 (466)
T PRK08274 454 GEEAARHAQ 462 (466)
T ss_pred HHHHHHHhh
Confidence 999998864
No 46
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=7.1e-43 Score=387.40 Aligned_cols=384 Identities=22% Similarity=0.289 Sum_probs=270.8
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeecc-------CCCCCHHHHHHHHHHhc--
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAG-- 148 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~-------~~~d~~~~~~~d~~~~g-- 148 (641)
++.++||||||+|.||++||+.|++.| +|+||||....+|++..++|+++... +..|+++.++.+.....
T Consensus 3 ~d~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~~s~g~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~ 82 (557)
T PRK12844 3 WDETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMSGGVLWLPNNPLMKAAGVPDSHEDALAYLDAVVGD 82 (557)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeceecceeecCChHHHHHcCcHHHHHHHHHHHHHHhcc
Confidence 345799999999999999999999999 99999999888888888887765432 22455555443333222
Q ss_pred -cCCCCHHHHHHHHHHhHHHHHHHHHcCCccccCCC-CCcccccCCCccccceeecc-----------------------
Q 006532 149 -AYLCDDETVRVVCTEGPDRIRELIAIGASFDRGED-GNLHLAREGGHSHHRIVHAA----------------------- 203 (641)
Q Consensus 149 -~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~-g~~~~~~~gg~~~~r~~~~~----------------------- 203 (641)
....++++++.+++++++.++||+++|++|...+. ..++....++++..|.++..
T Consensus 83 ~~~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (557)
T PRK12844 83 QGPASSPERREAYLRAGPAMVSFLEHQGMRFARCEGWSDYYPDLPGGEARGRSLEAKPFDARKLGPWFDRLNPPMATPPG 162 (557)
T ss_pred cccCCCHHHHHHHHhhhHHHHHHHHhcCceeEeCCCCCCCCCCCCCCcCCCceecCCCCChhHhhHHHHhhcCccccccc
Confidence 22378899999999999999999999999975321 11222223334333332211
Q ss_pred -----------------------------------------CCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCC
Q 006532 204 -----------------------------------------DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGP 242 (641)
Q Consensus 204 -----------------------------------------~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~ 242 (641)
...|..++..|.+.+++ .|++|+.++.|++|+.+ ++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~G~~l~~~l~~~~~~-~gv~i~~~~~v~~Li~~-~g- 239 (557)
T PRK12844 163 TVVMTDEYKWLQLIKRTPRGMRTAARVGARTLAARIRGQKLLTNGAALIGRMLEAALA-AGVPLWTNTPLTELIVE-DG- 239 (557)
T ss_pred ccccHHHHHHHHhhccCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHh-CCCEEEeCCEEEEEEEe-CC-
Confidence 11367788888888887 59999999999999986 56
Q ss_pred CceEEEEEEEecCCCeEEEEEc-CEEEEcCCCCCcC------CCC-------CCCcccCccchhHHHHhcCCeeeccccc
Q 006532 243 DAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAGHI------YPS-------TTNPLVATGDGMAMAHRAQAVISNMEFV 308 (641)
Q Consensus 243 ~~~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGg~~~~------~~~-------~~~~~~~~Gdg~~~a~~aGa~l~~~e~~ 308 (641)
+|+||++.. +|+.+.|+| +.|||||||+++. |.. +.+++.++|||+.|++++||.+.+|++.
T Consensus 240 --~v~Gv~~~~--~g~~~~i~A~~aVIlAtGG~~~N~em~~~~~p~~~~~~~~~~~~~~tGDGi~ma~~~GA~l~~m~~~ 315 (557)
T PRK12844 240 --RVVGVVVVR--DGREVLIRARRGVLLASGGFGHNAEMRKRYQPQPNSGDWTNANPGDTGEVIEAAMRLGAALDLMDEA 315 (557)
T ss_pred --EEEEEEEEE--CCeEEEEEecceEEEecCCccCCHHHHHHhcCCcccCcccCCCCCCCHHHHHHHHHcCCCccccccc
Confidence 899998863 577778999 5899999999983 321 3456789999999999999999999999
Q ss_pred cccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEe
Q 006532 309 QFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLD 388 (641)
Q Consensus 309 q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~lD 388 (641)
|++|+.+...+.+. ..+........++++||.+|+||+++.. ++..+..++..+. +...++.+|
T Consensus 316 ~~~p~~~~~~~~~~--------~~~~~~~~~~~g~i~VN~~G~RF~nE~~------~~~~~~~~~~~~~--~~~~~~I~D 379 (557)
T PRK12844 316 WWVPGAPLPNGGPR--------PYMHNSERSKPGSIIVDRAGRRFVNEAG------SYMEVGRAMYAQD--AVPAWMIMD 379 (557)
T ss_pred cccCccccCCCCcc--------cccccccccCCcEEEECCCCCccccCCC------cHHHHHHHHHhCC--CceEEEEEC
Confidence 99998664332110 1111111234678999999999998543 3444444444321 111234445
Q ss_pred CCCCC------------hhHHH-----hhChhHHHHHHHcCCC--------------------CC---------------
Q 006532 389 ISHKP------------TEKIL-----SHFPNIAAECLKYGLD--------------------IT--------------- 416 (641)
Q Consensus 389 ~~~~~------------~~~~~-----~~~~~~~~~~~~~G~d--------------------~~--------------- 416 (641)
..... .+... .+..++.+++++.|+| ++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~k~gid~~~L~atv~~yN~~~~~G~D~dFgr~~~~~~~~~~~~ 459 (557)
T PRK12844 380 SRYRKRYLFGTIPPGPTPQEWLDSGYMKRADTIEELAGKTGIDPAGLAATVERFNGFAATGTDPDFHRGESAYDRYYGDP 459 (557)
T ss_pred chHHhhcCccccCCccChHHHhhcCceEecCCHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCccCCCcchhhccccCC
Confidence 32110 00110 1234455554444433 11
Q ss_pred ------------CCC---eeEeeeeccccCceEeCCCCC------cccCCeeecccccCCCCCCCCccc-hhhhHHHHHH
Q 006532 417 ------------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLA-SNSLLEALVF 474 (641)
Q Consensus 417 ------------~~~---i~v~p~~~~~~GGI~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~-g~sl~~a~v~ 474 (641)
+.| +++.|..+.|+||++||+++| .+||||||||+++ +|++|.+|++ |+++++|++|
T Consensus 460 ~~~~~~~l~pi~~~PfYA~~~~~~~~~T~GGl~in~~~qVld~~g~pIpGLYAAG~~~-gg~~g~~Y~~~G~~l~~a~~~ 538 (557)
T PRK12844 460 TNKPNPSLGPLDKPPFYAVRMVPGDVGTSGGLLTDEHARVLREDGSVIPGLYATGNCT-ASVMGRTYPGAGASIGNSFVF 538 (557)
T ss_pred cCCCCcccCcCCCCCeEEEEEeccccEECCCccCCCCceEECCCCCCccceeeccccc-cccccCCCCcCccchHHHHHH
Confidence 122 467778899999999999998 4899999999997 7999999997 9999999999
Q ss_pred HHHHHHHHHHhh
Q 006532 475 ARRAVQPSIDHK 486 (641)
Q Consensus 475 G~~Ag~~aa~~~ 486 (641)
||+||++|+++.
T Consensus 539 GriAg~~aa~~~ 550 (557)
T PRK12844 539 GYIAALHAAGAR 550 (557)
T ss_pred HHHHHHHHHhcc
Confidence 999999998865
No 47
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=7.9e-42 Score=380.24 Aligned_cols=388 Identities=18% Similarity=0.216 Sum_probs=270.0
Q ss_pred CccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeecc-------CCCCCHHHHHHHHHHhcc
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGA 149 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~-------~~~d~~~~~~~d~~~~g~ 149 (641)
.++.++||||||+|+|||+||+.|++.| +|+||||....+|+|.+++|+++... +..++++.++.++...+.
T Consensus 7 ~~~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t~~s~G~i~~~~~~~q~~~G~~d~~~~~~~~~~~~~~ 86 (584)
T PRK12835 7 NFDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTALSGGGIWVPGAPAQRREGYVPDPEDVRRYLKQITG 86 (584)
T ss_pred CccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchHHHhCCCccccCChhhhhcCCCCCHHHHHHHHHHHhc
Confidence 4566899999999999999999999999 99999999988898999988886543 236889999999888888
Q ss_pred CCCCHHHHHHHHHHhHHHHHHHHHcC--CccccCCCC-CcccccCCCccccceee-------------------------
Q 006532 150 YLCDDETVRVVCTEGPDRIRELIAIG--ASFDRGEDG-NLHLAREGGHSHHRIVH------------------------- 201 (641)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~i~~l~~~G--v~~~~~~~g-~~~~~~~gg~~~~r~~~------------------------- 201 (641)
+.+++++++.+++++++.++||++++ +.|...... .+.....+.....|.++
T Consensus 87 ~~~d~~~v~~~~~~s~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 166 (584)
T PRK12835 87 GLVSAARLRAYVDAAPQMMEFLENLSPWLEFVWKPGYADYYPELPGGSPLGSTINVPPIDLRKLGEDEQHLLPPLALAPK 166 (584)
T ss_pred ccCCHHHHHHHHHHhHHHHHHHHHhCCcceeeecCCCCccCCCCCCCCCCCCccCCCCCChhhhchhHHhcccccccccc
Confidence 89999999999999999999999876 444321100 00000000000000000
Q ss_pred ----------------------------------------ccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006532 202 ----------------------------------------AADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 202 ----------------------------------------~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
.....|..++..|.+.+++ .|++|+.++.+++|+++++|
T Consensus 167 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~gv~i~~~~~~~~Li~d~~g 245 (584)
T PRK12835 167 GIWFTPKDLRLFYMVRQTWAGKAVLLKLIWRMVRARVFGRRMAAIGQSLVARLRLALKD-AGVPLWLDSPMTELITDPDG 245 (584)
T ss_pred cccccHHHHHHHHhhccCcchHHHHHHHHHHHHHhhhccCccccccHHHHHHHHHHHHh-CCceEEeCCEEEEEEECCCC
Confidence 0012355566677777766 69999999999999997667
Q ss_pred CCceEEEEEEEecCCCeEEEEEcC-EEEEcCCCCCcC-------CC------CCCCcccCccchhHHHHhcCCeeecccc
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISK-VTLLASGGAGHI-------YP------STTNPLVATGDGMAMAHRAQAVISNMEF 307 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak-~VVlAtGg~~~~-------~~------~~~~~~~~~Gdg~~~a~~aGa~l~~~e~ 307 (641)
+|+||++.. +++.+.|+|+ .||||||||++. .+ .+.+++.++|||+.|++++||.+.+|+.
T Consensus 246 ---~V~Gv~~~~--~~~~~~i~a~~aVilAtGGf~~N~em~~~y~p~~~~~~~~~g~~~~tGDGi~ma~~~GA~~~~~~~ 320 (584)
T PRK12835 246 ---AVVGAVVER--EGRTLRIGARRGVILATGGFDHDMDWRKEYLPELERKDWSFGNPANTGDGIRAGEKVGAATDLLDE 320 (584)
T ss_pred ---cEEEEEEEe--CCcEEEEEeceeEEEecCcccCCHHHHHHhCCCCCcCcccCCCCCCCcHHHHHHHHcCCCcccCcc
Confidence 899998853 5667789996 799999999972 22 2345678999999999999999999988
Q ss_pred ccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHh--cC-CCe
Q 006532 308 VQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKK--RN-EKY 384 (641)
Q Consensus 308 ~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~--~~-~~~ 384 (641)
.+++|......+.. .+++.+... .++++||.+|+||+++.. ++..++.++...... .. ..+
T Consensus 321 ~~~~~~~~~~~~~~---------~~~~~~~~~-~~~i~VN~~G~RF~nE~~------~~~~~~~~~~~~~~~~~~~~~~~ 384 (584)
T PRK12835 321 AWWFPAICWPDGRM---------QFMLNERMM-PAQFIVNGAGKRFINEAA------PYMDFVHAMIAGQRSGVGHIPCW 384 (584)
T ss_pred ceecceeecCCCce---------eeeeeccCC-CceEEECCCCCcCcCCcC------chhhHHHHHHhhccCCCCCcceE
Confidence 77766644322110 111222111 357999999999998643 333333433322110 00 123
Q ss_pred EEEeCCCC-------------------------ChhHHH----hhChhHHHHHHHcCCC--------------------C
Q 006532 385 VLLDISHK-------------------------PTEKIL----SHFPNIAAECLKYGLD--------------------I 415 (641)
Q Consensus 385 v~lD~~~~-------------------------~~~~~~----~~~~~~~~~~~~~G~d--------------------~ 415 (641)
+.+|.... ....+. .+.+++.+++++.|+| .
T Consensus 385 ~I~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kAdTleeLA~~~gida~~L~aTV~~yN~~~~~G~D~ 464 (584)
T PRK12835 385 LVTDIRSFSRYVFGGHLPIPKIPFAPVPTGRKFPQAWLESGVVKKADTWDELAAKIGVPAENLRATAERFNGLARKGHDD 464 (584)
T ss_pred EEEChHHHhhcCcccccCCCccccccccccccCcHHHHhCCCeeecCCHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcCc
Confidence 44443210 000000 1223455554444433 1
Q ss_pred --CC------------------------CC---eeEeeeeccccCceEeCCCCC------cccCCeeecccccCCCCCCC
Q 006532 416 --TS------------------------QP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGA 460 (641)
Q Consensus 416 --~~------------------------~~---i~v~p~~~~~~GGI~vD~~~~------T~ipGLyAaGe~a~~g~~Ga 460 (641)
.+ .| +++.|..+.|+||++||+++| ++|||||||||++ +|++|.
T Consensus 465 dFgr~~~~~~~~~~~~~~~~~~l~pi~~gPfYA~~~~p~~~~T~GGl~in~~~qVLd~~g~pIpGLYAAGe~~-Gg~~g~ 543 (584)
T PRK12835 465 DFNRGDSAYDNYYGDPTLPNPNLDPLGKPPYYAFRIELGDLGTSGGLRTDEHARVLREDDSVIPGLYAVGNTS-ASVMGR 543 (584)
T ss_pred ccCCCCcchhcccCCCCCCCccccccccCCeEEEEecccccccCcCccCCCCceEECCCCCCccceeeeeecc-cccccC
Confidence 11 12 466788899999999999998 5999999999997 799999
Q ss_pred Cccc-hhhhHHHHHHHHHHHHHHHHhhhc
Q 006532 461 NRLA-SNSLLEALVFARRAVQPSIDHKKS 488 (641)
Q Consensus 461 ~rl~-g~sl~~a~v~G~~Ag~~aa~~~~~ 488 (641)
+|++ |+++++|++|||+||++|++.++.
T Consensus 544 ~Y~g~G~slg~a~~fGriAG~~aa~~~~~ 572 (584)
T PRK12835 544 SYAGAGATIGPAMTFGYVAARHAAAVVAA 572 (584)
T ss_pred CCCcCccchHHHHHHHHHHHHHHHHhhhh
Confidence 9987 789999999999999999987643
No 48
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=100.00 E-value=3.2e-41 Score=375.11 Aligned_cols=381 Identities=22% Similarity=0.276 Sum_probs=260.4
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC--CCCCccccccCceeeccCC-------CCCHHHHHHHHHHhccC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE--PHESNTNYAQGGVSAVLCP-------SDSVESHMQDTIVAGAY 150 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~--~~~g~s~~a~ggi~~~~~~-------~d~~~~~~~d~~~~g~~ 150 (641)
.++||||||+|.|||+||+.|++.| +|+||||.. ..+|++.+++|+++..... .|+++.++.++++.+.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~ds~e~~~~d~~~~~~~ 82 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIKDSLELALQDWLGSAGF 82 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcccCHHHHHHHHHhccCC
Confidence 5799999999999999999999999 999999999 6788888888888765432 68999999999998887
Q ss_pred CCCHH-----HHHHHHHH-hHHHHHHHHHcCCccccCC----CCCcccccCC--CccccceeeccCCcHHHHHHHHHHHH
Q 006532 151 LCDDE-----TVRVVCTE-GPDRIRELIAIGASFDRGE----DGNLHLAREG--GHSHHRIVHAADMTGREIERALLEAV 218 (641)
Q Consensus 151 ~~~~~-----~~~~~~~~-~~~~i~~l~~~Gv~~~~~~----~g~~~~~~~g--g~~~~r~~~~~~~~g~~~~~~l~~~~ 218 (641)
..++. +++.++++ +++.++||+++|++|.... ++.. ..+ +++.+| .|..+.+|..++..|.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~---~~~~~~~~~~r-~~~~~~~G~~~~~~l~~~~ 158 (549)
T PRK12834 83 DRPEDHWPRQWAEAYVDFAAGEKRSWLHSLGLRFFPVVGWAERGGG---DAGGHGNSVPR-FHITWGTGPGVVEPFERRV 158 (549)
T ss_pred CCccccchHHHHHHHHHhCCHHHHHHHHHcCCeeEecCCccccCCc---ccCCcccccCc-eecCCCCcHHHHHHHHHHH
Confidence 76665 35677775 7999999999999997532 1211 122 235566 4544556778888887776
Q ss_pred H---cCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCC-------------CeEEEEEcCEEEEcCCCCCcC-----
Q 006532 219 V---SDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVET-------------QEVVRFISKVTLLASGGAGHI----- 277 (641)
Q Consensus 219 ~---~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~-------------g~~~~i~Ak~VVlAtGg~~~~----- 277 (641)
+ +..+|+|++++++++|+++ ++ +|+||++.+..+ ++.+.|+||.||||||||+.+
T Consensus 159 ~~~~~~~gv~i~~~t~~~~Li~~-~g---~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~n~em~~ 234 (549)
T PRK12834 159 REAAARGLVRFRFRHRVDELVVT-DG---AVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGGNHELVR 234 (549)
T ss_pred HHHHHhCCceEEecCEeeEEEEe-CC---EEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcccCHHHHH
Confidence 4 2346999999999999986 66 899999753211 235688999999999999986
Q ss_pred --CC----------CCCCcccCccchhHHHHhcCCeeeccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEE
Q 006532 278 --YP----------STTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGIL 345 (641)
Q Consensus 278 --~~----------~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~ 345 (641)
++ .+.++..+||||+.||+++||.+.+|+.++.+|..+...+ +..+.. ... .....++++
T Consensus 235 ~~~p~~~~~~~~~~~~~~~~~~tGdGi~ma~~aGA~l~~~~~~~~~~~~~~~~~-~~~~~~----~~~---~~~~~~~i~ 306 (549)
T PRK12834 235 RNWPERLGTPPKDMVSGVPAHVDGRMLGIAEAAGARVINRDRMWHYTEGIRNWD-PIWPNH----GIR---ILPGPSSLW 306 (549)
T ss_pred HhCccccCCCccccccCCCCCCCcHHHHHHHHcCCcEeCcccccccccccCCCC-CcCccc----cce---eccCCCEEE
Confidence 23 1345556899999999999999999998776654432211 000000 010 112245799
Q ss_pred EeCCCCccccccccccccCchhHHH--HHHHHHHHhcCCCeEEEeCCC--------------------------------
Q 006532 346 YNLGMERFMPLYDERAELAPRDVVA--RSIDDQLKKRNEKYVLLDISH-------------------------------- 391 (641)
Q Consensus 346 vn~~G~rf~~~~~~~~~~~~r~~~~--~~i~~~~~~~~~~~v~lD~~~-------------------------------- 391 (641)
||.+|+||+++..+. ++... .++.++ .....+..+|...
T Consensus 307 Vn~~GkRF~nE~~~~-----~~~~~~~~~~~~~--~~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (549)
T PRK12834 307 FDATGNRLPAPLFPG-----FDTLGTLKHILKT--GYDYSWFILTQKIIEKEFALSGSEQNPDLTGKDWKLLLRRRGKGA 379 (549)
T ss_pred ECCCCCCCCCCcccc-----ccHHHHHHHHhcc--CCccEEEEeCHHHHHHhhccCccccCcccccchhhhhhhhhcCCC
Confidence 999999999874210 00000 111000 0000011111100
Q ss_pred -CChhHHH------hhChhHHHHHHHcC-----------------------------CCC--------------------
Q 006532 392 -KPTEKIL------SHFPNIAAECLKYG-----------------------------LDI-------------------- 415 (641)
Q Consensus 392 -~~~~~~~------~~~~~~~~~~~~~G-----------------------------~d~-------------------- 415 (641)
...+.+. .+..++.+++.+.| .|+
T Consensus 380 ~~~~~~~~~~g~~~~kAdTleELA~k~g~~~~~~~id~~~L~~tv~~yN~~~~~~fg~d~~~~~~~~~~~~~~~~~~~~~ 459 (549)
T PRK12834 380 PGPVEAFKDHGEDFVVADDLEELVAGMNALTGEPLLDYAHLRRQIEARDREVANPFSKDAQITAIRNARRYLGDRLIRVA 459 (549)
T ss_pred CccHHHHHhcCCcEEEeCCHHHHHHHhcccccccCCCHHHHHHHHHHHhhhhcCccccchhhhhhhhhhhhcccchhccc
Confidence 0000000 01122222222222 221
Q ss_pred --------CCCC---eeEeeeeccccCceEeCCCCC------cccCCeeecccccC---CCCCCCCccchhhhHHHHHHH
Q 006532 416 --------TSQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVAC---TGLHGANRLASNSLLEALVFA 475 (641)
Q Consensus 416 --------~~~~---i~v~p~~~~~~GGI~vD~~~~------T~ipGLyAaGe~a~---~g~~Ga~rl~g~sl~~a~v~G 475 (641)
.+.| +++.|..+.|+||++||+++| ++|||||||||+++ +|++|.++++|+++++|++||
T Consensus 460 ~~~~~~~~~~gPfYA~~~~~~~~~T~GGl~id~~~qVld~dg~pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~G 539 (549)
T PRK12834 460 KPHRLLDPAAGPLIAVRLHILTRKTLGGLETDLDSRVLGADGTPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSG 539 (549)
T ss_pred CCccccCCCCCCEEEEEEeccccEEccCEeECCCCceeCCCCCEeCCeeeceecccccCCCcCCccccccchHHHHHHHH
Confidence 1233 577888999999999999998 58999999999983 378888899999999999999
Q ss_pred HHHHHHHHH
Q 006532 476 RRAVQPSID 484 (641)
Q Consensus 476 ~~Ag~~aa~ 484 (641)
|+||++|++
T Consensus 540 riAg~~aa~ 548 (549)
T PRK12834 540 RAAGRAAAR 548 (549)
T ss_pred HHHHHHHhh
Confidence 999999864
No 49
>PRK12839 hypothetical protein; Provisional
Probab=100.00 E-value=9.8e-40 Score=362.21 Aligned_cols=388 Identities=21% Similarity=0.222 Sum_probs=261.9
Q ss_pred CccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeecc-------CCCCCHHHHHHHHHHhcc
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGA 149 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~-------~~~d~~~~~~~d~~~~g~ 149 (641)
..+.++||+|||+|.+|++||+.|++.| +|+||||....+|++.++.|+++... +..++.+..+.++.....
T Consensus 4 ~~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 83 (572)
T PRK12839 4 SMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAWSGGWMWTPGNSLARADGVVEDKEEPRTYLEHRLG 83 (572)
T ss_pred CcCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccccCCeeecCCchhhhhccCcCchhhHHHHHHHHhC
Confidence 3456899999999999999999999999 99999999888888888777765432 225777777777777777
Q ss_pred CCCCHHHHHHHHHHhHHHHHHHHH-cCCccccCCC-CCcccccCCCccccceee--------------------------
Q 006532 150 YLCDDETVRVVCTEGPDRIRELIA-IGASFDRGED-GNLHLAREGGHSHHRIVH-------------------------- 201 (641)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~i~~l~~-~Gv~~~~~~~-g~~~~~~~gg~~~~r~~~-------------------------- 201 (641)
..+++++++.+++++++.++||++ .+++|..... ..++....++....|.++
T Consensus 84 ~~~~~~~~~~~~~~s~e~i~wL~~~~~v~f~~~~~~~d~~~~~~~~~~~gr~~~~~~~~~~~lg~~~~~~~~~~~~~~~~ 163 (572)
T PRK12839 84 ENYDADKVDALLDGAPEMVDFFEKKTALQFVPGAKIADIYGDLPGAGTGHRSVGPKPVNLRKLGPDVAALLRHQLYETSF 163 (572)
T ss_pred CCCCHHHHHHHHHhCHHHHHHHHhCCceEEEECCCCCCCCCCCCCCCCCCceecCCCCChhhcChHHHHhcCCCcccccc
Confidence 889999999999999999999998 5677631100 000000000000000000
Q ss_pred -----------------------------------------cc---CCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006532 202 -----------------------------------------AA---DMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 202 -----------------------------------------~~---~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
.. ...|..++..|.+.+.+ .|++|+.++.+++|+.
T Consensus 164 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~-~Gv~i~~~t~v~~Li~ 242 (572)
T PRK12839 164 LGMGIMAGPDLQAFLHATQDPKGFVHAARRVIVHMWDLATHRRGMQLVNGTALTGRLLRSADD-LGVDLRVSTSATSLTT 242 (572)
T ss_pred cccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHH-CCCEEEcCCEEEEEEE
Confidence 00 01366788889888887 5999999999999998
Q ss_pred cCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc-------CCCCC--------CCcccCccchhHHHHhcCCee
Q 006532 238 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH-------IYPST--------TNPLVATGDGMAMAHRAQAVI 302 (641)
Q Consensus 238 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~-------~~~~~--------~~~~~~~Gdg~~~a~~aGa~l 302 (641)
+++| +|+||++.+ .+++...+.+|.||||||||++ +++.+ .+++.++|||+.|++++||.+
T Consensus 243 ~~~g---~V~GV~~~~-~~g~~~i~aak~VVLAtGGf~~n~~~~~~~~p~~~~~~~~~~~~~~~~tGdGi~ma~~~GA~l 318 (572)
T PRK12839 243 DKNG---RVTGVRVQG-PDGAVTVEATRGVVLATGGFPNDVDRRKELFPRTPTGREHWTLAPAETTGDGISLAESVGARL 318 (572)
T ss_pred CCCC---cEEEEEEEe-CCCcEEEEeCCEEEEcCCCcccCHHHHHHhCCCCCCCCccccCCCCCCCcHHHHHHHHhCCcc
Confidence 6566 899998865 3565444556999999999998 45532 356789999999999999999
Q ss_pred eccc--cccccceeecCCCCCCCCCCCCCccceeecccc-CCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHh
Q 006532 303 SNME--FVQFHPTALADEGLPIKPKKTRENSFLITEAVR-GDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKK 379 (641)
Q Consensus 303 ~~~e--~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~-~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~ 379 (641)
.++. ..+++|..+...... . . ..+.....+ ..+.++||.+|+||+++.. ++..++.++..+...
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~---~---~-~~~~~~~~~~~~g~i~VN~~GkRF~nE~~------~~~~~~~~~~~~~~~ 385 (572)
T PRK12839 319 DRDLASPAAWCPVSLVPYRNG---K---V-GTFPHIMDRGKPGSIGVLATGKRFVNEAN------GYYDYTLAMVKAAPE 385 (572)
T ss_pred ccCCcccccccceecccCCCC---c---c-ccccccccccCCceEEECCCCCcCCCCCC------ccccHHHHHHHhccC
Confidence 8743 334555543221100 0 0 000000011 2568999999999998632 233344444433211
Q ss_pred cC--CCeEEEeCCCC-------------ChhH-H----HhhChhHHHHHHHcCCC--------------------CC--C
Q 006532 380 RN--EKYVLLDISHK-------------PTEK-I----LSHFPNIAAECLKYGLD--------------------IT--S 417 (641)
Q Consensus 380 ~~--~~~v~lD~~~~-------------~~~~-~----~~~~~~~~~~~~~~G~d--------------------~~--~ 417 (641)
+. ..++.+|.... .... + ..+.+++.+++++.|+| ++ +
T Consensus 386 ~~~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~k~gid~~~L~~TV~~yN~~~~~G~D~dFgr 465 (572)
T PRK12839 386 GEPVCSWLIADSRFVRKYPLGMAKPLPVPLTPYLRSGYLTRGRTIEELAEKCGIDPAGLEATVAEFNENARDGEDPEFGR 465 (572)
T ss_pred CCCccEEEEeChHHHhhccccccCCCCCccHhHhhcCcEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCcCcCC
Confidence 11 12444553210 0001 0 01234455554444433 11 1
Q ss_pred -------------------------CC---eeEeeeeccccCceEeCCCCC------cccCCeeecccccCCCCCCCCc-
Q 006532 418 -------------------------QP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANR- 462 (641)
Q Consensus 418 -------------------------~~---i~v~p~~~~~~GGI~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~r- 462 (641)
.| +++.|..++|+||++||+++| ++|||||||||++ +|++|.++
T Consensus 466 ~~~~~~~~~gd~~~~~~~~l~pi~~gPfYA~~~~p~~~~T~GGl~in~~~qVLd~dg~pIpGLYAAG~~~-gg~~g~~Y~ 544 (572)
T PRK12839 466 GTTPFNRGSGDPDNGPNPSLAPLEKGPFYAVKVVPGSFGTFAGLVADGKSRVLRDDDTPIDGLYAAGNDQ-ASVMGGHYP 544 (572)
T ss_pred CcchhhcccCCcccCCCcccccCCCCCeEEEEEeccccccCCCccCCCCceEECCCCCCcCCceeccccc-cccccCCCC
Confidence 12 567788999999999999998 5899999999997 78888655
Q ss_pred cchhhhHHHHHHHHHHHHHHHH
Q 006532 463 LASNSLLEALVFARRAVQPSID 484 (641)
Q Consensus 463 l~g~sl~~a~v~G~~Ag~~aa~ 484 (641)
++|++++.|++||++||++|++
T Consensus 545 ~~G~~lg~a~~fGriAg~~aA~ 566 (572)
T PRK12839 545 SGGINLGPAMTFGYIAGRELAG 566 (572)
T ss_pred CcccchhHHHHHHHHHHHHHHh
Confidence 6799999999999999999875
No 50
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=100.00 E-value=1.4e-39 Score=352.90 Aligned_cols=372 Identities=20% Similarity=0.204 Sum_probs=258.8
Q ss_pred EECccHHHHHHHHHHHhcC-CeEEEEecCC--CCCccccccCceeecc-------CCCCCHHHHHHHHHHhccCCCCHHH
Q 006532 87 VIGSGVAGLCYALEVAKHG-TVAVITKAEP--HESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGAYLCDDET 156 (641)
Q Consensus 87 VIGgG~AGl~AA~~aa~~G-~V~llek~~~--~~g~s~~a~ggi~~~~-------~~~d~~~~~~~d~~~~g~~~~~~~~ 156 (641)
|||+|.||++||+.|++.| +|+||||... .+|++... +++.... ...++++.++.++++.+.+.+++++
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 79 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGNARHG-RNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNESL 79 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcCcccc-cchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHHH
Confidence 7999999999999999999 9999999875 34444332 2221111 1236778899999998889999999
Q ss_pred HHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006532 157 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 236 (641)
Q Consensus 157 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~ 236 (641)
++.+++++++.++||+++|++|.....+.+.. ..+.++. ...+..++..|.+.+++ .|++|+++++|++|+
T Consensus 80 ~~~~~~~s~~~i~wl~~~Gv~f~~~~~g~~~~-------~~~~~~~-~~~g~~l~~~L~~~a~~-~Gv~i~~~~~v~~l~ 150 (432)
T TIGR02485 80 SRLGIGRGSRDLRWAFAHGVHLQPPAAGNLPY-------SRRTAFL-RGGGKALTNALYSSAER-LGVEIRYGIAVDRIP 150 (432)
T ss_pred HHHHHhcchhHHHHHHhCCceeeecCCCCccc-------cCceeee-cCCHHHHHHHHHHHHHH-cCCEEEeCCEEEEEE
Confidence 99999999999999999999997543332211 0111222 23577899999999987 599999999999999
Q ss_pred ecC-CCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC-------CCC------CCCcccCccchhHHHHhcCCee
Q 006532 237 TTL-DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI-------YPS------TTNPLVATGDGMAMAHRAQAVI 302 (641)
Q Consensus 237 ~~~-~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~-------~~~------~~~~~~~~Gdg~~~a~~aGa~l 302 (641)
.++ ++ +|+|+... .++ ..|+||.|||||||++.. ++. +.+.+.++|||+.|++++||.+
T Consensus 151 ~~~~~g---~v~gv~~~--~~~--~~i~ak~VIlAtGG~~~n~~~~~~~~~~~~~~~~~~~~~~~tGdgi~ma~~~Ga~~ 223 (432)
T TIGR02485 151 PEAFDG---AHDGPLTT--VGT--HRITTQALVLAAGGLGANRDWLRKTHGPRADGIANRGTPYQLGGLLLQLLAEGAQA 223 (432)
T ss_pred ecCCCC---eEEEEEEc--CCc--EEEEcCEEEEcCCCcccCHHHHHhhcCCccccccccCCCCcccHHHHHHHHcCccc
Confidence 763 45 78888762 122 478999999999999873 111 2245678999999999999998
Q ss_pred eccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCC
Q 006532 303 SNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNE 382 (641)
Q Consensus 303 ~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~ 382 (641)
.++. .++|+..... .. |... ...........++++||.+|+||+++..+.. ...+..+...+..+ .+..
T Consensus 224 ~~~~-~~~~~~~~~~-~~---~~~~---~~~~~~~~~~~~~i~vn~~G~RF~~E~~~~~-~~~~~~~~~~~~~~--~~~~ 292 (432)
T TIGR02485 224 IGDP-TDGHVVAVDA-RA---PFHD---GGIVTRIDGMQLGIVVGRDGRRFADEGAIRG-PERYAVWGRQLASR--PGQR 292 (432)
T ss_pred cCCC-CcceeEeecC-CC---CcCC---CceeeeecccccEEEECCCCCEeeecCCccc-cchHHHHHHHHHhC--CCCe
Confidence 7664 4556554321 10 1000 1112222223567999999999998532210 00111222222221 1112
Q ss_pred CeEEEeCCCCCh---hH-HHhhChhHHHHHHHcCCCCC---------------------CCC---eeEeeeeccccCceE
Q 006532 383 KYVLLDISHKPT---EK-ILSHFPNIAAECLKYGLDIT---------------------SQP---IPVVPAAHYMCGGVR 434 (641)
Q Consensus 383 ~~v~lD~~~~~~---~~-~~~~~~~~~~~~~~~G~d~~---------------------~~~---i~v~p~~~~~~GGI~ 434 (641)
.++++|....+. .. ...+..++.+++++.|+|+. +.| +++.|..|+|+||++
T Consensus 293 ~~~i~D~~~~~~~~~~~~~~~~adtleeLA~~~gid~~~l~~tv~~yN~~~~~g~~~i~~~PfYa~~~~p~~~~T~GGl~ 372 (432)
T TIGR02485 293 AYILLDADAAKRLPPMACPPLSADTLEELAGLLGIDPGGLAETLDRPNAAPRTGARMILVVPFHAYPMIPGITFTRYGLV 372 (432)
T ss_pred EEEEecchhhhhcccccCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeecccceeccceE
Confidence 356677643210 00 00134566677777777643 233 788999999999999
Q ss_pred eCCCCC------cccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhh
Q 006532 435 AGLQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 486 (641)
Q Consensus 435 vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~ 486 (641)
||+++| .+|||||||||++++++||.+|++|+++++|++|||+||++|++++
T Consensus 373 id~~~~Vl~~~g~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~~ 430 (432)
T TIGR02485 373 VDATARVRLNDAVAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARLA 430 (432)
T ss_pred ECCCceEECCCCCCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHhh
Confidence 999998 4899999999997668999999999999999999999999998764
No 51
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=5.7e-39 Score=356.60 Aligned_cols=381 Identities=23% Similarity=0.304 Sum_probs=261.3
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeecc-------CCCCCHHHHHHHHHHhccC
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGAY 150 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~-------~~~d~~~~~~~d~~~~g~~ 150 (641)
++.++||||||+|++|++||+.|++.| +|+||||....+|++.++.|+++... +..++.+....+.......
T Consensus 4 ~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 83 (557)
T PRK07843 4 TVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARSGGGVWIPNNEVLKRAGVPDTPEAARTYLHSIVGD 83 (557)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccccccCceeecCCHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence 455799999999999999999999999 99999999888888888777765432 2245666666666666666
Q ss_pred CCCHHHHHHHHHHhHHHHHHHHHc-CCccccCC-CCCcccccCCCccccceee---------------------------
Q 006532 151 LCDDETVRVVCTEGPDRIRELIAI-GASFDRGE-DGNLHLAREGGHSHHRIVH--------------------------- 201 (641)
Q Consensus 151 ~~~~~~~~~~~~~~~~~i~~l~~~-Gv~~~~~~-~g~~~~~~~gg~~~~r~~~--------------------------- 201 (641)
..+++.++.+.++.++.++|+.+. +..+.... .+.+.....++....+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~ 163 (557)
T PRK07843 84 VVPPERIDAYLDRGPEMLSFVLAHSPLKLCWVPGYSDYYPEAPGGRPGGRSIEPKPFDARKLGADLAGLEPPYGKVPLNM 163 (557)
T ss_pred hcCHHhhhhHHhcChHHHHHHHhcCCceEEecCCCCCcCCCCCCCCCCCceecCCCCChhhhhhHHHHhccccccccccc
Confidence 678889999999999999998874 54332211 0111000000000000000
Q ss_pred --------------------------------------ccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCC
Q 006532 202 --------------------------------------AADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPD 243 (641)
Q Consensus 202 --------------------------------------~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~ 243 (641)
.....+..+...|.+.+++ .|+++++++.+++|+.+ ++
T Consensus 164 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~-~gv~v~~~t~v~~l~~~-~g-- 239 (557)
T PRK07843 164 VVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLGMGQALAAGLRIGLQR-AGVPVLLNTPLTDLYVE-DG-- 239 (557)
T ss_pred cccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHc-CCCEEEeCCEEEEEEEe-CC--
Confidence 0001245567778777877 59999999999999986 56
Q ss_pred ceEEEEEEEecCCCeEEEEEcC-EEEEcCCCCCc------CCC-------CCCCcccCccchhHHHHhcCCeeecccccc
Q 006532 244 AVCHGVDTLNVETQEVVRFISK-VTLLASGGAGH------IYP-------STTNPLVATGDGMAMAHRAQAVISNMEFVQ 309 (641)
Q Consensus 244 ~~v~Gv~~~~~~~g~~~~i~Ak-~VVlAtGg~~~------~~~-------~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q 309 (641)
+|+||++.. +++...|+|+ .|||||||+.. .|. .+.++..++|||+.|++++||.+.+|++.|
T Consensus 240 -~v~Gv~~~~--~g~~~~i~A~~~VIlAtGG~~~n~~m~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~aGA~l~~m~~~~ 316 (557)
T PRK07843 240 -RVTGVHAAE--SGEPQLIRARRGVILASGGFEHNEQMRAKYQRAPIGTEWTVGAKANTGDGILAGEKLGAALDLMDDAW 316 (557)
T ss_pred -EEEEEEEEe--CCcEEEEEeceeEEEccCCcCcCHHHHHHhcCCcccCcccCCCCCCCcHHHHHHHHcCCCccCchhhc
Confidence 899998853 5667789996 79999999997 231 245677899999999999999999999999
Q ss_pred ccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHH----HHHh-c--CC
Q 006532 310 FHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDD----QLKK-R--NE 382 (641)
Q Consensus 310 ~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~----~~~~-~--~~ 382 (641)
++|+.....+ + .+++.+. ..+++++||.+|+||++++ .+++.++.++.. +... + ..
T Consensus 317 ~~p~~~~~~~----~------~~~~~~~-~~~g~i~VN~~G~RF~nE~------~~~~~~~~a~~~~~~~~~~~~~~~~~ 379 (557)
T PRK07843 317 WGPTIPLPGG----P------WFALSER-NLPGSIIVNMSGKRFMNES------APYVEAVHHMYGGEYGQGPGPGENIP 379 (557)
T ss_pred cCCccccCCC----c------chhhhhh-ccCCeEEECCCCCcccCCC------CcHHHHHHHHHhhccccccCCCCCce
Confidence 9987532111 1 1222221 1257899999999999854 344445555441 1100 0 01
Q ss_pred CeEEEeCCCC--------------ChhHH----HhhChhHHHHHHHcCCCC--------------------C--------
Q 006532 383 KYVLLDISHK--------------PTEKI----LSHFPNIAAECLKYGLDI--------------------T-------- 416 (641)
Q Consensus 383 ~~v~lD~~~~--------------~~~~~----~~~~~~~~~~~~~~G~d~--------------------~-------- 416 (641)
.++.+|.... +.+.+ ..+.+++.+++++.|+|+ +
T Consensus 380 ~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~aTV~~yN~~~~~G~D~~Fgr~~~~~ 459 (557)
T PRK07843 380 AWLVFDQRYRDRYLFAGLQPRQPIPSRWLESGVIVKADTLAELAAKIGVPADALTATVQRFNGFARSGVDEDFHRGESAY 459 (557)
T ss_pred EEEEECchHHhhcCcCcCCCCCCCcHHHhhcCceeecCCHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCcccCCCCccc
Confidence 2344553211 00001 013345555555554432 1
Q ss_pred -------------------CCC---eeEeeeeccccCceEeCCCCC------cccCCeeecccccCCCCCCCCccc-hhh
Q 006532 417 -------------------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLA-SNS 467 (641)
Q Consensus 417 -------------------~~~---i~v~p~~~~~~GGI~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~-g~s 467 (641)
+.| +++.|..+.|+||++||+++| .+|||||||||++ +|++|.+|++ |++
T Consensus 460 ~~~~~~~~~~~~~~l~~i~~~PfYA~~~~~~~~~T~GGl~id~~~qVld~~g~pIpGLYAaG~~~-gg~~g~~Y~~~G~~ 538 (557)
T PRK07843 460 DRYYGDPTNKPNPNLGELSHAPFYAAKMVPGDLGTKGGLRTDVRGRVLRDDGSVIEGLYAAGNVS-APVMGHTYAGPGAT 538 (557)
T ss_pred ccccCCCCCCCCcccccccCCCeEEEEEecccceeCCCceECCCceEECCCCCCcCCceeccccc-cccccCCcCccccc
Confidence 112 567788999999999999998 4899999999998 7899999987 889
Q ss_pred hHHHHHHHHHHHHHHHH
Q 006532 468 LLEALVFARRAVQPSID 484 (641)
Q Consensus 468 l~~a~v~G~~Ag~~aa~ 484 (641)
+++|++|||+||++|++
T Consensus 539 ~~~a~~~GriAg~~aa~ 555 (557)
T PRK07843 539 IGPAMTFGYLAALDIAA 555 (557)
T ss_pred hhhHHHHHHHHHHHHhh
Confidence 99999999999999875
No 52
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=100.00 E-value=1.7e-38 Score=354.32 Aligned_cols=391 Identities=20% Similarity=0.203 Sum_probs=265.2
Q ss_pred CCccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeecc-------CCCCCHHHHHHHHHHhc
Q 006532 77 DGSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAG 148 (641)
Q Consensus 77 ~~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~-------~~~d~~~~~~~d~~~~g 148 (641)
..++.++||||||+|++|++||+.|+++| +|+||||....+|++..++|+++... +..|+++.++.++....
T Consensus 11 ~~~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~s~g~~~~~~~~~q~~~g~~ds~e~~~~~~~~~~ 90 (578)
T PRK12843 11 ERWDAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATSAGTTWIPGTRHGLAVGPDDSLEAARTYLDALV 90 (578)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccCceeecCCchHhhhccccccHHHHHHHHHHhh
Confidence 34566899999999999999999999999 99999999988888888888776432 23688888877777666
Q ss_pred cCCCCHHHHHHHHHHhHHHHHHHHH-cCCccccC---CC-----------CCcc-----------------------ccc
Q 006532 149 AYLCDDETVRVVCTEGPDRIRELIA-IGASFDRG---ED-----------GNLH-----------------------LAR 190 (641)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~i~~l~~-~Gv~~~~~---~~-----------g~~~-----------------------~~~ 190 (641)
....++++++.+++++++.++||++ .|+.|... .+ +... ...
T Consensus 91 ~~~~d~~lv~~~~~~s~e~i~wl~~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (578)
T PRK12843 91 GDRSPEELRDAFLASGPRAIAFLEANSEVKFRAYASHPDYESDLPGATLRGRALEPLPFDGRKLGADFALIRPPIPEFTV 170 (578)
T ss_pred CCCCcHHHHHHHHhccHHHHHHHHHcCCceeeeCCCCCCCCCCCCCCCCCCCcccCCCCChhhhhhHHHHhccccccccc
Confidence 6668999999999999999999996 78888421 11 0000 001
Q ss_pred CCCccccce------------------------------eec-cC--CcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006532 191 EGGHSHHRI------------------------------VHA-AD--MTGREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 191 ~gg~~~~r~------------------------------~~~-~~--~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
.++++..+. .+. .. ..|..++..|.+.+++ .|++++.++.+++|+.
T Consensus 171 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~~aL~~~~~~-~Gv~i~~~t~v~~Li~ 249 (578)
T PRK12843 171 LGGMMVDRTDVGHLLALTKSWRAFRHAVRLLARYARDRISYARGTRLVMGNALIGRLLYSLRA-RGVRILTQTDVESLET 249 (578)
T ss_pred cccccccHHHHHHHHHhhcChhhHHHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHh-CCCEEEeCCEEEEEEe
Confidence 122221110 000 00 1367788899999987 5999999999999997
Q ss_pred cCCCCCceEEEEEEEecCCCeEEEEEc-CEEEEcCCCCCcC------------CCCCCCcccCccchhHHHHhcCCeeec
Q 006532 238 TLDGPDAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAGHI------------YPSTTNPLVATGDGMAMAHRAQAVISN 304 (641)
Q Consensus 238 ~~~g~~~~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGg~~~~------------~~~~~~~~~~~Gdg~~~a~~aGa~l~~ 304 (641)
+ ++ +|+||.+.+ +++.+.|.| +.|||||||++++ +..++++..++|||+.|++++||.+.+
T Consensus 250 ~-~g---~V~GV~~~~--~g~~~~i~A~~~VVlAtGg~~~n~em~~~~~p~~~~~~~~~~~~~tGdGi~ma~~~Ga~~~~ 323 (578)
T PRK12843 250 D-HG---RVIGATVVQ--GGVRRRIRARGGVVLATGGFNRHPQLRRELLPAAVARYSPGAPGHTGAAIDLALDAGARYGR 323 (578)
T ss_pred e-CC---EEEEEEEec--CCeEEEEEccceEEECCCCcccCHHHHHHhCCCCcccccCCCCCCCcHHHHHHHHhCCCccc
Confidence 6 56 899998753 566678887 7999999999985 344667788999999999999999876
Q ss_pred cccc--cccceeecCCCCCCCCCCCCCccceeeccccC-CCcEEEeCCCCccccccccccccCchhHHHHHHHHHHH-hc
Q 006532 305 MEFV--QFHPTALADEGLPIKPKKTRENSFLITEAVRG-DGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLK-KR 380 (641)
Q Consensus 305 ~e~~--q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~-~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~-~~ 380 (641)
|... .+.|......... .. ..+......++ .++++||.+|+||+++. .+++.++.++..... ..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~g~I~VN~~GkRF~nE~------~~~~~~~~~~~~~~~~~~ 391 (578)
T PRK12843 324 GLLSNAFWAPVSVRRRADG--ST----AVFPHFYLDRGKPGTIAVNQQGRRFVNES------TSYHLFGTAMFAAGKTSP 391 (578)
T ss_pred cCcccceecccccccCCCC--cc----ccccchhhhccCCCeEEECCCCCccccCC------ccHHHHHHHHHhhccCCC
Confidence 5321 1233221110000 00 00000000122 46899999999999853 344444544433211 01
Q ss_pred -CCCeEEEeCCCCC-------------hhHH-----HhhChhHHHHHHHcCCC--------------------CC-----
Q 006532 381 -NEKYVLLDISHKP-------------TEKI-----LSHFPNIAAECLKYGLD--------------------IT----- 416 (641)
Q Consensus 381 -~~~~v~lD~~~~~-------------~~~~-----~~~~~~~~~~~~~~G~d--------------------~~----- 416 (641)
...++.+|..... .+.. ..+..++.+++++.|+| ++
T Consensus 392 ~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~~Tv~~yN~~~~~G~D~dFgr~~ 471 (578)
T PRK12843 392 GIPAYLITDAEFLRKYGLGMVRPGGRGLAPFLRDGYLTVASTLDELAPKLGIDPAALAATVQRHNQYARTGIDPDFGRGA 471 (578)
T ss_pred CccEEEEEChHHHhhcCcccCCCCCcCcHhHhhcCceeecCCHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCcccCCCc
Confidence 1123444432110 0000 01223444454444433 11
Q ss_pred ----------------------CCC---eeEeeeeccccCceEeCCCCC------cccCCeeecccccCCCCCCCCccc-
Q 006532 417 ----------------------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLA- 464 (641)
Q Consensus 417 ----------------------~~~---i~v~p~~~~~~GGI~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~- 464 (641)
+.| +++.|..+.|+||++||+++| +.||||||||+++ +|++|.++++
T Consensus 472 ~~~~~~~~~~~~~~~~~l~pi~~~PfYA~~~~p~~~~T~GGl~in~~~qVld~dg~pIpGLYAaG~~~-gg~~g~~y~~~ 550 (578)
T PRK12843 472 TAYQRMNGDAMIGPNPNLGPIETAPFYAVRLYPGDIGAATGLVTDASARVLNADGQPISGLYACGNDM-ASIMGGTYPGP 550 (578)
T ss_pred chhhcccCCcccCCCCcccccCCCCeEEEEecCCccccCCCccCCCCceEECCCCCCcCCceeccccc-cccccCCCCCc
Confidence 112 567788899999999999998 5899999999998 7999988865
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhh
Q 006532 465 SNSLLEALVFARRAVQPSIDHKK 487 (641)
Q Consensus 465 g~sl~~a~v~G~~Ag~~aa~~~~ 487 (641)
|+++++|++|||+||++|+++++
T Consensus 551 G~~lg~a~~fGriAg~~aa~~~~ 573 (578)
T PRK12843 551 GITLGPAIVFAYLAARHAAKRTL 573 (578)
T ss_pred ccchHHHHHHHHHHHHHHHHhhh
Confidence 78999999999999999988753
No 53
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=100.00 E-value=2.8e-38 Score=352.94 Aligned_cols=389 Identities=21% Similarity=0.233 Sum_probs=256.1
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeecc-------CCCCCHHHHHHHHHHhccCC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGAYL 151 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~-------~~~d~~~~~~~d~~~~g~~~ 151 (641)
+.++||||||+|+||++||+.|+++| +|+||||....+|++.++.|.++... +..++++.++.++.+...+.
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~s~g~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~ 86 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAFSGGVLWIPGNPHAREAGVADSREAARTYLKHETGAF 86 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccceeCcEeccCCChHHHhcCcchhHHHHHHHHHHhcCCC
Confidence 45799999999999999999999999 99999999988888888766544321 23578888877777776778
Q ss_pred CCHHHHHHHHHHhHHHHHHHHH-cCCccccCCCCCcccccCCCccccceee-----------------------------
Q 006532 152 CDDETVRVVCTEGPDRIRELIA-IGASFDRGEDGNLHLAREGGHSHHRIVH----------------------------- 201 (641)
Q Consensus 152 ~~~~~~~~~~~~~~~~i~~l~~-~Gv~~~~~~~g~~~~~~~gg~~~~r~~~----------------------------- 201 (641)
.++++++.+++++.+.++||++ .|+.|.......+.....++....|.++
T Consensus 87 ~~~~~~~~~~~~~~~~i~wl~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~ 166 (574)
T PRK12842 87 FDAAAVEAFLDNGPEMVEFFERETEVKFVPTLYPDYHPDAPGGVDIGRSILAAPYDIRGLGKDMARLRPPLKTITFIGMM 166 (574)
T ss_pred CCHHHHHHHHhccHHHHHHHHhCCCCceeeCCCCCCCCCCCCccCCCccccCCCCChhhhhhhHHhhcCCccccccccee
Confidence 8999999999999999999986 5888853211111000011110000000
Q ss_pred --------------------------------------ccC---CcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCC
Q 006532 202 --------------------------------------AAD---MTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD 240 (641)
Q Consensus 202 --------------------------------------~~~---~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~ 240 (641)
... ..|..+...|.+.+++ .|++|+.++.|++|+.+ +
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~-~Gv~i~~~~~v~~l~~~-~ 244 (574)
T PRK12842 167 FNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALD-LGIPILTGTPARELLTE-G 244 (574)
T ss_pred cccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHh-CCCEEEeCCEEEEEEee-C
Confidence 000 1356677888888877 59999999999999986 5
Q ss_pred CCCceEEEEEEEecCCCeEEEEEc-CEEEEcCCCCC-------cCCCC--------CCCcccCccchhHHHHhcCCeeec
Q 006532 241 GPDAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAG-------HIYPS--------TTNPLVATGDGMAMAHRAQAVISN 304 (641)
Q Consensus 241 g~~~~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGg~~-------~~~~~--------~~~~~~~~Gdg~~~a~~aGa~l~~ 304 (641)
+ +|+||++.+. ++ ...+.| +.||||||+++ .+|+. ++++..++|||+.|++++||.+.+
T Consensus 245 g---~V~GV~~~~~-~~-~~~i~a~k~VVlAtGg~~~n~~~~~~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~~Ga~l~~ 319 (574)
T PRK12842 245 G---RVVGARVIDA-GG-ERRITARRGVVLACGGFSHDLARIARAYPHLARGGEHLSPVPAGNTGDGIRLAEAVGGAVDI 319 (574)
T ss_pred C---EEEEEEEEcC-Cc-eEEEEeCCEEEEcCCCccchHHHHHHhcccCcCCcccccCCCCCCCcHHHHHHHHhCCCccc
Confidence 6 8999988752 33 456788 58999999999 44543 456778999999999999999864
Q ss_pred cc--cccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHh--c
Q 006532 305 ME--FVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKK--R 380 (641)
Q Consensus 305 ~e--~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~--~ 380 (641)
+. ...++|........ . +.. . ...+. .....+.++||.+|+||+++.. +++.++.++...... +
T Consensus 320 ~~~~~~~~~~~~~~~~~~-~-~~~-~-~~~~~--~~~~~g~i~Vn~~G~RF~nE~~------~~~~~~~~~~~~~~~~~~ 387 (574)
T PRK12842 320 RFPDAAAWMPVSKVPLGG-G-RTG-V-FPHLL--DRYKPGVIGVLRNGKRFTNESN------SYHDVGAAMIRACEGQKE 387 (574)
T ss_pred CCcccccccccccccCCC-C-ccc-c-ccccc--cccCCceEEECCCCCCccCCCC------cHhHHHHHHHHhcccCCC
Confidence 31 11122221100000 0 000 0 00000 0112467999999999998643 233333333322111 1
Q ss_pred CCCeEEEeCCCC-------------ChhHHH-----hhChhHHHHHHHcCCC--------------------CC------
Q 006532 381 NEKYVLLDISHK-------------PTEKIL-----SHFPNIAAECLKYGLD--------------------IT------ 416 (641)
Q Consensus 381 ~~~~v~lD~~~~-------------~~~~~~-----~~~~~~~~~~~~~G~d--------------------~~------ 416 (641)
...++.+|.... ..+... .+..++.+++++.|+| ++
T Consensus 388 ~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~~Tv~~yN~~~~~G~D~~Fgr~~~ 467 (574)
T PRK12842 388 TAMWLICDRATLRKYGLGYAKPAPMPVGPLLRNGYLIKGDTLAELAGKAGIDAAGLEATVRRYNEGAVKGIDPAFGRGST 467 (574)
T ss_pred ccEEEEEcHHHHhhcCcccCCCCCCChHHHHhcCcEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence 112344442100 000000 0123444444433332 11
Q ss_pred ---------------------CCC---eeEeeeeccccCceEeCCCCC------cccCCeeecccccCCCCCCCCccc-h
Q 006532 417 ---------------------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLA-S 465 (641)
Q Consensus 417 ---------------------~~~---i~v~p~~~~~~GGI~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~-g 465 (641)
+.| +++.|..+.|+||++||+++| ++||||||||+++ +|++|.++.+ |
T Consensus 468 ~~~~~~~~~~~~~~~~l~~i~~~PfYA~~~~~~~~~T~GGl~id~~~qVld~~g~pIpGLYAaG~~~-gg~~g~~y~~~G 546 (574)
T PRK12842 468 SFNRYLGDPDHKPNPCVAPIGSGPFYAVKVIMGDLGTFDGLRTDVTGEVLDADGTPIAGLYAVGNDR-ASIMGGNYPGAG 546 (574)
T ss_pred hhhhhcCCcccCCCcccccCCCCCEEEEEecccccccCCCcCCCCCceEECCCCCCcCCceeccccc-ccCccCCCCCCc
Confidence 122 567788999999999999998 5899999999998 7999999887 9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhc
Q 006532 466 NSLLEALVFARRAVQPSIDHKKS 488 (641)
Q Consensus 466 ~sl~~a~v~G~~Ag~~aa~~~~~ 488 (641)
+++++|++||++||++|++.++.
T Consensus 547 ~~lg~a~~fGriAg~~aa~~~~~ 569 (574)
T PRK12842 547 ITLGPIMTFGYITGRHLAGVAGG 569 (574)
T ss_pred ccHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999987643
No 54
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=100.00 E-value=4.9e-37 Score=342.82 Aligned_cols=389 Identities=21% Similarity=0.252 Sum_probs=257.5
Q ss_pred CccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeecc-------CCCCCHHHHHHHHHHhcc
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGA 149 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~-------~~~d~~~~~~~d~~~~g~ 149 (641)
.++.++||||||+|++|++||+.++++| +|+||||....+|++..+.|.++... +..++.+..+.++.....
T Consensus 8 ~~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 87 (581)
T PRK06134 8 PPDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAWSGGWMWIPRNPLARRAGIVEDIEQPRTYLRHELG 87 (581)
T ss_pred CCCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccccCceeecCccHHhhhccccchHHHHHHHHHHHhC
Confidence 3566899999999999999999999999 99999999887888777766555332 234677777766666666
Q ss_pred CCCCHHHHHHHHHHhHHHHHHHHH-cCCccccCCC-CCccc----ccCCCccc---------------------cce---
Q 006532 150 YLCDDETVRVVCTEGPDRIRELIA-IGASFDRGED-GNLHL----AREGGHSH---------------------HRI--- 199 (641)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~i~~l~~-~Gv~~~~~~~-g~~~~----~~~gg~~~---------------------~r~--- 199 (641)
+..++++++.+++++.+.++||++ .|++|..... ..+.. ...++++. ++.
T Consensus 88 ~~~~~~l~~~~~~~s~~~~~wl~~~~gv~~~~~~~~~d~~~~~~~~~~ggr~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 167 (581)
T PRK06134 88 ARYDAARIDAFLEAGPHMVAFFERHTALRFADGNAIPDYHGDTPGAATGGRSLIAAPFDGRELGALLERLRKPLRETSFM 167 (581)
T ss_pred cCCCHHHHHHHHhccHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCeeccCCCChhhhhHHHHHhcccccccccc
Confidence 778999999999999999999987 4788742110 00000 00001000 000
Q ss_pred --------------------------------------eec---cCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006532 200 --------------------------------------VHA---ADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 238 (641)
Q Consensus 200 --------------------------------------~~~---~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 238 (641)
.+. ....|..++..|.+.+++ .|++|+++++|++|+.+
T Consensus 168 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~-~Gv~i~~~t~v~~l~~~ 246 (581)
T PRK06134 168 GMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAED-LGVRIWESAPARELLRE 246 (581)
T ss_pred ccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHh-CCCEEEcCCEEEEEEEe
Confidence 000 012356678889888887 59999999999999986
Q ss_pred CCCCCceEEEEEEEecCCCeEEEEEc-CEEEEcCCCCCc-------CCCC--------CCCcccCccchhHHHHhcCCee
Q 006532 239 LDGPDAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAGH-------IYPS--------TTNPLVATGDGMAMAHRAQAVI 302 (641)
Q Consensus 239 ~~g~~~~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGg~~~-------~~~~--------~~~~~~~~Gdg~~~a~~aGa~l 302 (641)
++ +|+||++.+ +++...|+| |.||||||+++. +++. +.++..++|||+.|++++||.+
T Consensus 247 -~g---~v~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~n~~~~~~~~p~~~~~~~~~~~~~~~~tGDGi~ma~~~GA~~ 320 (581)
T PRK06134 247 -DG---RVAGAVVET--PGGLQEIRARKGVVLAAGGFPHDPARRAALFPRAPTGHEHLSLPPPGNSGDGLRLGESAGGVV 320 (581)
T ss_pred -CC---EEEEEEEEE--CCcEEEEEeCCEEEEcCCCcccCHHHHHHhcCCCCCCCCccccCCCCCCChHHHHHHHhCCCc
Confidence 56 899998764 344567899 999999999986 3442 3456789999999999999998
Q ss_pred ec-c-ccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHh-
Q 006532 303 SN-M-EFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKK- 379 (641)
Q Consensus 303 ~~-~-e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~- 379 (641)
.. + .+.+++|+.+...... .. .....++. ....+.++||.+|+||+++.. ++..+..++......
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~g--~~--~~~~~~~~--~~~~g~i~VN~~G~RF~nE~~------~~~~~~~~~~~~~~~~ 388 (581)
T PRK06134 321 ATDLASPVAWAPVSLVPHADG--SV--GHFPHIIE--RGKPGLIGVLANGKRFVNEAD------SYHDYVAAMFAATPPG 388 (581)
T ss_pred cCCCCcccccccccccCCCCC--cc--cccccccc--cCCCCeEEECCCCCcccCCCc------chhhHHHHHHHhcCCC
Confidence 63 3 3567787654321100 00 00001111 112568999999999998532 222233333332111
Q ss_pred cC-CCeEEEeCCCC-------------ChhHHH-----hhChhHHHHHHHcCCC--------------------CC----
Q 006532 380 RN-EKYVLLDISHK-------------PTEKIL-----SHFPNIAAECLKYGLD--------------------IT---- 416 (641)
Q Consensus 380 ~~-~~~v~lD~~~~-------------~~~~~~-----~~~~~~~~~~~~~G~d--------------------~~---- 416 (641)
.+ ..++.+|.... +.+... .+..++.+++++.|+| ++
T Consensus 389 ~~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~~Tv~~yN~~~~~G~D~dFgr~ 468 (581)
T PRK06134 389 QPVRSWLICDHRFLRRYGLGHIRPAPLPLGPYVRSGYLKRGASLEELARACGIDPDGLEATVARYNRHARNGQDPDFGRG 468 (581)
T ss_pred CCccEEEEECHHHHhhcCccccCCCCCChHHHhhCCCEEecCCHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCcccCCC
Confidence 11 12344443210 000000 1223444444443332 11
Q ss_pred ------------------------CCC---eeEeeeeccccCceEeCCCCC------cccCCeeecccccCCCCCCCCc-
Q 006532 417 ------------------------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANR- 462 (641)
Q Consensus 417 ------------------------~~~---i~v~p~~~~~~GGI~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~r- 462 (641)
+.| +++.|..+.|+||++||+++| ++||||||||+++ +|++|.++
T Consensus 469 ~~~~~~~~~~~~~~~~~~~l~pi~~gPfYA~~~~~~~~~T~GGl~id~~~qVld~~g~pIpGLYAaG~~~-gg~~g~~y~ 547 (581)
T PRK06134 469 STPYNRKQGDPAHGGPNPCVAPIEHGPFYAVKVLPGCLGTFAGLKTDADARVLDQAGQPIPGLYAAGNDM-ASVMGGFYP 547 (581)
T ss_pred CchhhcccCCcccCCCCcccCcCCCCCeEEEEeeccccccCCCccCCCCCceECCCCCCcCcceeccccc-cccccCCcC
Confidence 122 567788999999999999998 5899999999998 67777654
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhh
Q 006532 463 LASNSLLEALVFARRAVQPSIDHK 486 (641)
Q Consensus 463 l~g~sl~~a~v~G~~Ag~~aa~~~ 486 (641)
.+|+++++|++|||+||++|++..
T Consensus 548 ~~G~~lg~a~~fGriAg~~aa~~~ 571 (581)
T PRK06134 548 SGGITLGPALTFGYIAGRHIAGAS 571 (581)
T ss_pred CcchhHHHHHHHHHHHHHHHhhcC
Confidence 578999999999999999998754
No 55
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.95 E-value=3.3e-26 Score=231.05 Aligned_cols=346 Identities=21% Similarity=0.258 Sum_probs=220.1
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHH-
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR- 158 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~- 158 (641)
..+||+|||||+|||+||+.|++.| +|+|+|+++..+-.-..++||-|++.+... +..++...- .+...++
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~-~~~~ls~~p------~~~~fl~s 74 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA-PDEFLSRNP------GNGHFLKS 74 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCcccccccc-HHHHHHhCC------CcchHHHH
Confidence 3589999999999999999999999 999999999877666777888888777666 666654321 1112222
Q ss_pred HHHHHh-HHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006532 159 VVCTEG-PDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 159 ~~~~~~-~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
.+.+.. .+.++|.+.+|+++.....|++. +.....+.++++|..++++ .||+++.++.|.++..
T Consensus 75 al~~ft~~d~i~~~e~~Gi~~~e~~~Gr~F--------------p~sdkA~~Iv~~ll~~~~~-~gV~i~~~~~v~~v~~ 139 (408)
T COG2081 75 ALARFTPEDFIDWVEGLGIALKEEDLGRMF--------------PDSDKASPIVDALLKELEA-LGVTIRTRSRVSSVEK 139 (408)
T ss_pred HHHhCCHHHHHHHHHhcCCeeEEccCceec--------------CCccchHHHHHHHHHHHHH-cCcEEEecceEEeEEe
Confidence 233333 35678999999999877776543 2334577899999999998 5999999999999988
Q ss_pred cCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecC
Q 006532 238 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALAD 317 (641)
Q Consensus 238 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~ 317 (641)
++++ . .+++.+|+ +|+|+.+||||||-+ ||.+ +.||+|+..|...|..+... .|+.+.-
T Consensus 140 ~~~~-------f-~l~t~~g~--~i~~d~lilAtGG~S--~P~l----Gstg~gy~iA~~~G~~I~~~-----rpalvpf 198 (408)
T COG2081 140 DDSG-------F-RLDTSSGE--TVKCDSLILATGGKS--WPKL----GSTGFGYPIARQFGHTITPL-----RPALVPF 198 (408)
T ss_pred cCce-------E-EEEcCCCC--EEEccEEEEecCCcC--CCCC----CCCchhhHHHHHcCCccccC-----ccccCCc
Confidence 6322 2 23445675 799999999999988 7776 78999999999999988654 3332210
Q ss_pred CCCCCCCCCCCCccceeeccccC---CC--cEEEeCCCCcccccc--ccccccCch-hHHHHHHHHHHHhcCCCeEEEeC
Q 006532 318 EGLPIKPKKTRENSFLITEAVRG---DG--GILYNLGMERFMPLY--DERAELAPR-DVVARSIDDQLKKRNEKYVLLDI 389 (641)
Q Consensus 318 ~g~~~~p~~~~~~~~l~~e~~~~---~g--~~~vn~~G~rf~~~~--~~~~~~~~r-~~~~~~i~~~~~~~~~~~v~lD~ 389 (641)
.-. +| ++ +.+.+ .. ..+.+.+|..|-.+. -..+--.|- -.+|..... ..+.++..+.+|+
T Consensus 199 t~~--~~-------~~--~~l~gls~~~v~~~v~~~~g~~~~g~~LfTh~GiSGPavl~~Ss~~~~-~~~~~~~~i~iDl 266 (408)
T COG2081 199 TLD--ES-------FL--ERLAGLSLKSVPLSVTAGKGITFQGDLLFTHRGLSGPAVLQLSSYWRL-LEKKGGATLSIDL 266 (408)
T ss_pred cCC--HH-------HH--HHhcCCcccceEEEEecCCCceeecceEEEecCCcHHHHHHHHHHHHH-hccCCCceEEEec
Confidence 000 00 00 11111 01 112222222222110 000111111 112333332 3333446788887
Q ss_pred CC-CChhHHHhh-----------------Ch-hH-HHHHHHcCCCCCCC-----------------CeeEee-------e
Q 006532 390 SH-KPTEKILSH-----------------FP-NI-AAECLKYGLDITSQ-----------------PIPVVP-------A 425 (641)
Q Consensus 390 ~~-~~~~~~~~~-----------------~~-~~-~~~~~~~G~d~~~~-----------------~i~v~p-------~ 425 (641)
.. .+.+++... +| .+ .-+++..|+ +++. .+++.| .
T Consensus 267 lP~~~~~~l~~~l~~~~~~kslkn~L~~~lp~rlv~~~l~~~~i-~~~~~~~ls~~~~~~l~~~ik~~~i~~~Gt~~~~~ 345 (408)
T COG2081 267 LPDVDAEELLRELRRANPKKSLKNALAKLLPKRLVEFLLERAGI-PDEPLAQLSPKELAQLAAALKAWPITPNGTEPYRE 345 (408)
T ss_pred CCCCCHHHHHHHHHhhChhhHHHHHHHHHhhhHHHHHHHHhccC-CCcchhhcCHHHHHHHHHHHhcCeeeccCCcccce
Confidence 63 344433211 11 11 122344566 3210 122332 3
Q ss_pred eccccCceEeC---CC-CC-cccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhh
Q 006532 426 AHYMCGGVRAG---LQ-GE-TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 486 (641)
Q Consensus 426 ~~~~~GGI~vD---~~-~~-T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~ 486 (641)
+..|.|||.++ .+ ++ ..+||||.|||+. .++| ++||.++.+|+++|+.||+.++++.
T Consensus 346 A~VT~GGV~~~eid~kTmesk~vPGLyf~GEvl--Dv~g--~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 346 AEVTAGGVDTKEIDSKTMESKKVPGLYFAGEVL--DVTG--WTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred eEEecCceehhhcCHHHHHhhcCCCcEEEEEEE--Eecc--CCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 56789999854 44 33 4799999999997 7776 6789999999999999999988764
No 56
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.93 E-value=1.3e-25 Score=237.77 Aligned_cols=340 Identities=22% Similarity=0.268 Sum_probs=183.9
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHHH
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~ 161 (641)
|||+|||||+|||+||+.|++.| +|+|+||+...+-....+++|-|+..+...++..+.... ..++..++...
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~------~~~~~f~~~~l 74 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGY------GRNPKFLKSAL 74 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-------TBTTTCTHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhc------ccchHHHHHHH
Confidence 79999999999999999999999 999999998765433444556666555333333322111 11122222111
Q ss_pred -H-HhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006532 162 -T-EGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 239 (641)
Q Consensus 162 -~-~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~ 239 (641)
. ...+.+.+++++|+++...++|+++ +.......++..|...+++ .||+|+++++|.+|..++
T Consensus 75 ~~f~~~d~~~ff~~~Gv~~~~~~~gr~f--------------P~s~~a~~Vv~~L~~~l~~-~gv~i~~~~~V~~i~~~~ 139 (409)
T PF03486_consen 75 KRFSPEDLIAFFEELGVPTKIEEDGRVF--------------PKSDKASSVVDALLEELKR-LGVEIHFNTRVKSIEKKE 139 (409)
T ss_dssp HHS-HHHHHHHHHHTT--EEE-STTEEE--------------ETT--HHHHHHHHHHHHHH-HT-EEE-S--EEEEEEET
T ss_pred hcCCHHHHHHHHHhcCCeEEEcCCCEEC--------------CCCCcHHHHHHHHHHHHHH-cCCEEEeCCEeeeeeecC
Confidence 1 2245688999999998766666543 2334567899999999988 599999999999999874
Q ss_pred CCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecCCC
Q 006532 240 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEG 319 (641)
Q Consensus 240 ~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g 319 (641)
+ .+..+.. .+++ .+.|+.|||||||.+ ||.+ +.+|+|+.+|.+.|..++.. .|..+.-.
T Consensus 140 ~----~~f~v~~---~~~~--~~~a~~vILAtGG~S--~p~~----GS~G~gy~~a~~lGh~i~~~-----~PaL~~l~- 198 (409)
T PF03486_consen 140 D----GVFGVKT---KNGG--EYEADAVILATGGKS--YPKT----GSDGSGYRIAKKLGHTITPP-----YPALVPLK- 198 (409)
T ss_dssp T----EEEEEEE---TTTE--EEEESEEEE----SS--SGGG----T-SSHHHHHHHHTT--EEEE-----EEES--EE-
T ss_pred C----ceeEeec---cCcc--cccCCEEEEecCCCC--cccc----CCCcHHHHHHHHCCCcEecC-----CCccCCee-
Confidence 3 4555554 2333 799999999999988 7765 78999999999999988653 34322100
Q ss_pred CCCCCCCCCCccc--eeeccccCCCcE-EEeCCCCccccccccccccC--------c-hhHHHHHHHHHHHhcCCCeEEE
Q 006532 320 LPIKPKKTRENSF--LITEAVRGDGGI-LYNLGMERFMPLYDERAELA--------P-RDVVARSIDDQLKKRNEKYVLL 387 (641)
Q Consensus 320 ~~~~p~~~~~~~~--l~~e~~~~~g~~-~vn~~G~rf~~~~~~~~~~~--------~-r~~~~~~i~~~~~~~~~~~v~l 387 (641)
..+... .-...++-.... ++ ++..-..+ .+|+. | --.+|+.+...+.+.....+.+
T Consensus 199 -------~~~~~~~~~~l~Gv~~~~~~~~~--~~~~~~~~---~GellfT~~GiSGp~il~lS~~~~~~l~~~~~~~i~i 266 (409)
T PF03486_consen 199 -------CDEPWLFFKELSGVRLKAVISLL--DGKKKASE---TGELLFTHYGISGPAILQLSRFIARALNKKKKVEISI 266 (409)
T ss_dssp ---------HHHHHTGGGTT-EEEEEEEEE---ECTCEEE---EEEEEE-SSEEESHHHHHHTTTHHHHHH--TTEEEEE
T ss_pred -------ecchhhhhhhhCCCceeeEEEEe--ccCCccce---eeeEEEECCccchHHHHHHHHHHHHHHHhcCCceEEE
Confidence 000000 000001101111 11 11111111 11111 1 0123444444455555567888
Q ss_pred eCCC-CChhHHHhh--------------------Chh--HHHHHHHcCC-CCCCC-------------------CeeEee
Q 006532 388 DISH-KPTEKILSH--------------------FPN--IAAECLKYGL-DITSQ-------------------PIPVVP 424 (641)
Q Consensus 388 D~~~-~~~~~~~~~--------------------~~~--~~~~~~~~G~-d~~~~-------------------~i~v~p 424 (641)
|+-. .+.+++.+. +|. ...+++..++ ++++. ++++..
T Consensus 267 d~~p~~~~e~l~~~l~~~~~~~~~~~~~~~l~~~lp~rl~~~ll~~~~i~~~~~~~~~l~~~~~~~L~~~lk~~~~~v~g 346 (409)
T PF03486_consen 267 DFLPDLSEEELEELLQERKEKNPKRTLKNFLKGLLPKRLALALLKRAGIKDPDKKVSELSKKERNRLANLLKRFPFTVTG 346 (409)
T ss_dssp ESSTTS-HHHHHHHHHHHHHHTTTSBHHHHHTTTS-HHHHHHHHHHTTS-STTSBGGGS-HHHHHHHHHHHHCEEEEESE
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHcCCCccccchhhcCHHHHHHHHHHHHhCceeecc
Confidence 9863 343333221 121 1234566788 66431 123332
Q ss_pred -----eeccccCceE---eCCC-CC-cccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHH
Q 006532 425 -----AAHYMCGGVR---AGLQ-GE-TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQ 480 (641)
Q Consensus 425 -----~~~~~~GGI~---vD~~-~~-T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~ 480 (641)
.+..|.|||. ||.+ ++ ..+||||+|||+. .++| .+||.+|.+|+.+|++||+
T Consensus 347 ~~~~~~A~VT~GGV~~~eid~~TmeSk~~~gLyf~GEvL--DvdG--~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 347 TGGFDKAQVTAGGVDLKEIDPKTMESKLVPGLYFAGEVL--DVDG--PCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp E--TTT-SEEEEEE-GGGB-TTT-BBSSSTTEEE-GGGB--SEEE---TTTHHHHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCcCHHHCCHhhhcccCCCCeEEEEEEE--Eecc--CcCchhHhHHHHHHHHhhC
Confidence 2667899998 4554 44 4699999999997 7776 5789999999999999986
No 57
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=99.92 E-value=1.8e-23 Score=203.23 Aligned_cols=259 Identities=21% Similarity=0.236 Sum_probs=175.6
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC--CCCCccccccCceeeccCC-------CCCHHHHHHHHHHhcc
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE--PHESNTNYAQGGVSAVLCP-------SDSVESHMQDTIVAGA 149 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~--~~~g~s~~a~ggi~~~~~~-------~d~~~~~~~d~~~~g~ 149 (641)
..++||+|||+|.|||.||.++++.| +|+|+|... ..+|...|+-||+..+.+| .|+.+...+|++....
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfWSfGGLF~vdSPEQRRlgirDsldLArqDW~gtA~ 82 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQRRLGIRDSLDLARQDWFGTAA 82 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceeeeecccEEEecCHHHhhcccchhHHHHHHhhhcccc
Confidence 34689999999999999999999999 999999865 3578888999998776554 4666666777765443
Q ss_pred CC-----CCHHHHHHHHHHh-HHHHHHHHHcCCccccC----CCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHH
Q 006532 150 YL-----CDDETVRVVCTEG-PDRIRELIAIGASFDRG----EDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVV 219 (641)
Q Consensus 150 ~~-----~~~~~~~~~~~~~-~~~i~~l~~~Gv~~~~~----~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~ 219 (641)
+- ....+.+.+.+.+ .+.-.||.+.|+.+... +.|... ...-|.+.+|... .-.+|..++..+.+.++
T Consensus 83 FDRPEDhWPr~WAeAYl~FAAGEkR~WL~~~GmrwFPvVGWAERGG~~-A~ghGNSVPRFHi-TWGTGPgvl~pFvr~~r 160 (552)
T COG3573 83 FDRPEDHWPRQWAEAYLDFAAGEKRSWLHRRGMRWFPVVGWAERGGSD-AQGHGNSVPRFHI-TWGTGPGVLEPFVRRLR 160 (552)
T ss_pred cCCccccchHHHHHHHHhhhccchhHHHHHcCCeeeeeccchhhCCcc-cCCCCCCCcceEE-eecCCcchhhHHHHHHH
Confidence 32 2233444444433 45668999999887531 222111 1223456677543 33455555555444443
Q ss_pred c---CCCcEEEcceEEEEEEecCCCCCceEEEEEEEec--------------CCCeEEEEEcCEEEEcCCCCCcC-----
Q 006532 220 S---DPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNV--------------ETQEVVRFISKVTLLASGGAGHI----- 277 (641)
Q Consensus 220 ~---~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~--------------~~g~~~~i~Ak~VVlAtGg~~~~----- 277 (641)
+ ..-|++.+.++|..|... ++ +|+||...-. ..|+ +.+.|.+||+++||.++.
T Consensus 161 e~~~~~~v~f~~RHrV~~l~~t-~g---rvtGv~GdVLeps~v~RG~~SSR~~~Gd-Fef~A~aviv~SGGIGGnhelVR 235 (552)
T COG3573 161 EAQRRGRVTFRFRHRVDGLTTT-GG---RVTGVRGDVLEPSDVERGQPSSREVVGD-FEFSASAVIVASGGIGGNHELVR 235 (552)
T ss_pred HHHhCCceEEEeeeeccceEee-CC---eEeeecccccCCCccccCCCccceeecc-eEEeeeeEEEecCCcCCCHHHHH
Confidence 3 468999999999999987 56 8888864211 1232 579999999999999873
Q ss_pred --CC-----------CCCCcccCccchhHHHHhcCCeeeccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcE
Q 006532 278 --YP-----------STTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGI 344 (641)
Q Consensus 278 --~~-----------~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~ 344 (641)
|| .+..|....|-.+.++..+|+.++|.+-+..+-..+.+. .|++|.+ .. ..+.|+...
T Consensus 236 rnWP~eRlG~~Pe~m~~GVPaHVDGrmi~i~~~aGg~vIN~DRMWHYtEGirNw-dPiWp~H----gI---RIlPGPSSl 307 (552)
T COG3573 236 RNWPTERLGRAPEQMLSGVPAHVDGRMIGIAVAAGGSVINPDRMWHYTEGIRNW-DPIWPNH----GI---RILPGPSSL 307 (552)
T ss_pred hcCchhhcCCChHHHhcCCcccccchhHHHHHHhCCceeccccceehhhccccC-CCcCccc----ce---eeccCCcce
Confidence 44 123345577888899999999999998776555555443 3556643 22 234567788
Q ss_pred EEeCCCCcc
Q 006532 345 LYNLGMERF 353 (641)
Q Consensus 345 ~vn~~G~rf 353 (641)
+++..|+|+
T Consensus 308 WlDa~G~RL 316 (552)
T COG3573 308 WLDAAGKRL 316 (552)
T ss_pred eECCCCCcC
Confidence 999999985
No 58
>PF02910 Succ_DH_flav_C: Fumarate reductase flavoprotein C-term; InterPro: IPR004112 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AEF_A 3AE9_A 3AE5_A 3AEA_A 3SFD_A 3AE7_A 3AEB_A 3AE8_A 1ZP0_A 3AE6_A ....
Probab=99.91 E-value=7.1e-25 Score=195.00 Aligned_cols=99 Identities=40% Similarity=0.657 Sum_probs=85.5
Q ss_pred HHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhc-cCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCccc
Q 006532 524 RKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFE-HGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGL 602 (641)
Q Consensus 524 ~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~ 602 (641)
+++||++||+++||+|++++|++|+++|++|++++.++.+. .....++++.+++|++||+++|++++.|||.|+||||+
T Consensus 1 r~~Lq~~M~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~el~n~l~~a~~i~~aAl~R~ESRG~ 80 (129)
T PF02910_consen 1 REELQEIMWEYAGIVRNEEGLEEALEKLEELREELKNIKVPDKGRRFNHELMEALELRNMLLVAELIAKAALARKESRGA 80 (129)
T ss_dssp HHHHHHHHHHHSSSSBEHHHHHHHHHHHHHHHHHHTTBE-SCHCSTTBHHHHHHHHHHHHHHHHHHHHHHHHHS-SEBTT
T ss_pred CHHHHHHHHhCCCEEEcHHHHHHHHHHHHHHHHHHhcCeecCcccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCccc
Confidence 57899999999999999999999999999999988643322 22345788899999999999999999999999999999
Q ss_pred ccccCCCCCccCCCCCeeec
Q 006532 603 HYMVDFPHVEENKRLPTIIL 622 (641)
Q Consensus 603 h~R~D~P~~d~~~~~~~~~~ 622 (641)
|||.|||++||++|.+++++
T Consensus 81 H~R~D~P~~~d~~~~~~~~~ 100 (129)
T PF02910_consen 81 HYREDYPERDDENWLKHIIV 100 (129)
T ss_dssp BEBTTSSSCETTTCSEEEEE
T ss_pred chhccccccccccccEEEEE
Confidence 99999999988877777654
No 59
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.90 E-value=2.1e-21 Score=207.88 Aligned_cols=339 Identities=21% Similarity=0.262 Sum_probs=202.4
Q ss_pred EEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHHHH--
Q 006532 86 SVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCT-- 162 (641)
Q Consensus 86 lVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~~-- 162 (641)
+|||||+||++||+.|++.| +|+|+||....++....+++|.+...+..+. ..++... ..++..++....
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~-~~~~~~~------~~~~~~~~~~l~~~ 73 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPT-PEFVAYY------PRNGKFLRSALSRF 73 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcc-hhHHHhc------CCCcHHHHHHHHhC
Confidence 59999999999999999999 9999999987766655566666655443322 2222111 112232222221
Q ss_pred HhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCC
Q 006532 163 EGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGP 242 (641)
Q Consensus 163 ~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~ 242 (641)
...+.++|+.++|+++.....|.+. +.......+...|.+.+++ .|++++.++.|+++..+ ++
T Consensus 74 ~~~d~~~~~~~~Gv~~~~~~~g~~~--------------p~~~~a~~v~~~L~~~l~~-~gv~i~~~~~V~~i~~~-~~- 136 (400)
T TIGR00275 74 SNKDLIDFFESLGLELKVEEDGRVF--------------PCSDSAADVLDALLNELKE-LGVEILTNSKVKSIKKD-DN- 136 (400)
T ss_pred CHHHHHHHHHHcCCeeEEecCCEeE--------------CCCCCHHHHHHHHHHHHHH-CCCEEEeCCEEEEEEec-CC-
Confidence 2456778999999988754444321 1223456788889988887 59999999999999764 33
Q ss_pred CceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecCCCCCC
Q 006532 243 DAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPI 322 (641)
Q Consensus 243 ~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~ 322 (641)
...+.. +++ .+.|+.||+|||+++ |+.. +++|+|+.++.++|+.+.. .+|..+.-.-.
T Consensus 137 ---~~~v~~----~~~--~i~ad~VIlAtG~~s--~p~~----gs~G~g~~la~~lG~~i~~-----~~P~l~~l~~~-- 194 (400)
T TIGR00275 137 ---GFGVET----SGG--EYEADKVILATGGLS--YPQL----GSTGDGYEIAESLGHTIVP-----PVPALVPLTLD-- 194 (400)
T ss_pred ---eEEEEE----CCc--EEEcCEEEECCCCcc--cCCC----CCCcHHHHHHHHCCCCEec-----ccceEeEEEeC--
Confidence 223332 233 589999999999987 5543 7899999999999998763 34443321000
Q ss_pred CCCCCCCccceeeccccCCCcEEEeCCCCcccccccc-----ccccCch-hHHHHHHHHHHHhcCCCeEEEeCCC-CChh
Q 006532 323 KPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDE-----RAELAPR-DVVARSIDDQLKKRNEKYVLLDISH-KPTE 395 (641)
Q Consensus 323 ~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~-----~~~~~~r-~~~~~~i~~~~~~~~~~~v~lD~~~-~~~~ 395 (641)
.| .......++-...+.+..+|++|.++..+ .+-..|. -.+++.+.+.+..+....+.+|+-. .+.+
T Consensus 195 ~~------~~~~l~Gv~~~~~~~~~~~~~~~~~~~g~llft~~gisG~~vl~~s~~~~~~~~~~~~~~~~id~~p~~~~~ 268 (400)
T TIGR00275 195 ES------FLKELSGISLDGVVLSLVNGKKVLEEFGDLLFTHFGLSGPAILDLSAFAARALLKHKGVELEIDLLPDLSEE 268 (400)
T ss_pred Cc------ccccCCCCcCccEEEEecCCcEEEeecccEEEECCCcCHHHHHHHHHHHHHHhhcCCCcEEEEEcCCCCCHH
Confidence 00 00000111111222233445555432111 0000111 1134433333332333568888864 3343
Q ss_pred HHHhh--------------------Chh--HHHHHHHcCCCCCCC-------------------CeeEee-----eeccc
Q 006532 396 KILSH--------------------FPN--IAAECLKYGLDITSQ-------------------PIPVVP-----AAHYM 429 (641)
Q Consensus 396 ~~~~~--------------------~~~--~~~~~~~~G~d~~~~-------------------~i~v~p-----~~~~~ 429 (641)
++... +|. +..+++..|+++++. ++++.. .+..|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~g~~~~~~a~vt 348 (400)
T TIGR00275 269 ELEQRLKRLRKSNPKKTVKNILKGLLPKRLAELLLEQLGIDPDLPAAQLSKKEIKKLVQLLKNWPFTVSGTRGFKEAEVT 348 (400)
T ss_pred HHHHHHHHHHHHChhhhHHHHhhhhhhHHHHHHHHHHcCCCCCCChHHCCHHHHHHHHHHHhCCEEEecCcCccceeEEe
Confidence 33211 111 123345568876532 123322 36679
Q ss_pred cCceEe---CCC-CC-cccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHH
Q 006532 430 CGGVRA---GLQ-GE-TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQ 480 (641)
Q Consensus 430 ~GGI~v---D~~-~~-T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~ 480 (641)
.|||.+ |.+ ++ ..+||||.|||+. .+.| .+||.+|.+|+.+|+.||+
T Consensus 349 ~GGv~~~ei~~~~m~~k~~~gly~~GE~l--Dv~g--~~GGyNlq~a~~sg~~ag~ 400 (400)
T TIGR00275 349 AGGVSLKEINPKTMESKLVPGLYFAGEVL--DVDG--DTGGYNLQWAWSSGYLAGK 400 (400)
T ss_pred cCcccchhcChhhhhhcCCCCeEEEEEEE--ecCC--CCCchHHHHHHHHHHHhcC
Confidence 999975 443 44 4699999999997 6766 5789999999999999973
No 60
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.79 E-value=8.4e-19 Score=187.18 Aligned_cols=309 Identities=19% Similarity=0.240 Sum_probs=168.4
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~ 158 (641)
+.+|||+|||+|+||..||++|++.| +|+|+|+... -|+++.+.|.| |....
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~-lGGtCln~GCI--------------------------PsK~L 54 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGER-LGGTCLNVGCI--------------------------PSKAL 54 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCC-cCceEEeeCcc--------------------------ccHHH
Confidence 35799999999999999999999999 9999999963 35555555544 44433
Q ss_pred HHHHHhHHHHHHHH-HcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006532 159 VVCTEGPDRIRELI-AIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 159 ~~~~~~~~~i~~l~-~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
....+....+.... .+|+..... .+. +..+....+.....+...+. .+.+..||+++.++- .+ .
T Consensus 55 l~~a~~~~~~~~~~~~~Gi~~~~~---~id--------~~~~~~~k~~v~~~~~~~~~-~l~~~~~V~vi~G~a--~f-~ 119 (454)
T COG1249 55 LHAAEVIEEARHAAKEYGISAEVP---KID--------FEKLLARKDKVVRLLTGGVE-GLLKKNGVDVIRGEA--RF-V 119 (454)
T ss_pred HHHHHHHHHHhhcccccceecCCC---CcC--------HHHHHHHHHHHHHHHhhhHH-HHHhhCCCEEEEEEE--EE-C
Confidence 33333323333332 355554421 111 00110001111111222222 333335999998852 23 2
Q ss_pred cCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCC--CCCCcccCccchhHHHHh-------cCCeeeccccc
Q 006532 238 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYP--STTNPLVATGDGMAMAHR-------AQAVISNMEFV 308 (641)
Q Consensus 238 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~--~~~~~~~~~Gdg~~~a~~-------aGa~l~~~e~~ 308 (641)
+ ++ +| .+.. . +..+++|+.+|+|||+.+...+ ...+....+.++.....+ +|+..+.+||.
T Consensus 120 ~-~~---~v---~V~~-~--~~~~~~a~~iiIATGS~p~~~~~~~~~~~~~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a 189 (454)
T COG1249 120 D-PH---TV---EVTG-E--DKETITADNIIIATGSRPRIPPGPGIDGARILDSSDALFLLELPKSLVIVGGGYIGLEFA 189 (454)
T ss_pred C-CC---EE---EEcC-C--CceEEEeCEEEEcCCCCCcCCCCCCCCCCeEEechhhcccccCCCEEEEECCCHHHHHHH
Confidence 2 22 22 2221 1 3347999999999999887655 333333444545333333 57888888888
Q ss_pred cccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEe
Q 006532 309 QFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLD 388 (641)
Q Consensus 309 q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~lD 388 (641)
+.+-.. | + -+.+-..+.++++.+++. +++.+.+.+.+++ -.++.+
T Consensus 190 ~~~~~L----G---------------~-------~VTiie~~~~iLp~~D~e--------i~~~~~~~l~~~g-v~i~~~ 234 (454)
T COG1249 190 SVFAAL----G---------------S-------KVTVVERGDRILPGEDPE--------ISKELTKQLEKGG-VKILLN 234 (454)
T ss_pred HHHHHc----C---------------C-------cEEEEecCCCCCCcCCHH--------HHHHHHHHHHhCC-eEEEcc
Confidence 765221 0 1 134445667787755543 6666666666632 222221
Q ss_pred CCCC----ChhHHHhh-------ChhHHHHHHHcCCCCCCCCe--eEeeeeccccCceEeCCCCCcccCCeeecccccCC
Q 006532 389 ISHK----PTEKILSH-------FPNIAAECLKYGLDITSQPI--PVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACT 455 (641)
Q Consensus 389 ~~~~----~~~~~~~~-------~~~~~~~~~~~G~d~~~~~i--~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~ 455 (641)
.... ..+.+.-. .-..+.++...|..|+.+.+ +-..-.....|+|.||..++|++||+||+|||+ +
T Consensus 235 ~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~-~ 313 (454)
T COG1249 235 TKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVI-G 313 (454)
T ss_pred ceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCEEEeeccC-C
Confidence 1100 00000000 00122334455666665532 211222233489999977888899999999997 3
Q ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHH
Q 006532 456 GLHGANRLASNSLLEALVFARRAVQPSID 484 (641)
Q Consensus 456 g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~ 484 (641)
+.. |+.. |.-.|++|+++++.
T Consensus 314 ~~~----Lah~----A~~eg~iaa~~i~g 334 (454)
T COG1249 314 GPM----LAHV----AMAEGRIAAENIAG 334 (454)
T ss_pred Ccc----cHhH----HHHHHHHHHHHHhC
Confidence 432 3333 45568888888875
No 61
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.75 E-value=1.5e-17 Score=196.31 Aligned_cols=106 Identities=19% Similarity=0.189 Sum_probs=89.0
Q ss_pred eeccccccccccccccccccccccccccCCCccccccccccCCCCChhHhHhhhcccCc-------c--ccCCCCccccc
Q 006532 13 HFGGIRCKGQSCQQASLVSSLTFNGCIQRELSWFLRFQRFNFSHSPVSENWKSLRTVPV-------L--SCLRDGSVKYF 83 (641)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~ 83 (641)
-++|+...+|+.|++..++..+++++.+++++.+|||++++||+..|...|+++.+..+ . +...+.....+
T Consensus 85 ~~~gm~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~e~~ir~~ag~g~~~~~~~p~~~~~~~~~~ 164 (985)
T TIGR01372 85 LYDGLVATSQNRWPSLAFDIGAFNDLFAPLLSAGFYYKTFMWPAAFWWKIYEPFIRRAAGLGVADTETDPDTYDKVNAHC 164 (985)
T ss_pred cccCCEEecccCCCccccchhhhhhhhhhcccccccccccCCcHHHHHHHhhHHhHHhccCCcCCCCCCCccchhhcccC
Confidence 38899999999999999999999999999999999999999999888888888766532 0 00111112468
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 118 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g 118 (641)
||+|||||+|||+||+.|++.| +|+|+|+....+|
T Consensus 165 dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG 200 (985)
T TIGR01372 165 DVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGG 200 (985)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence 9999999999999999999999 9999999876654
No 62
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=99.72 E-value=2.9e-15 Score=156.32 Aligned_cols=323 Identities=15% Similarity=0.097 Sum_probs=186.6
Q ss_pred CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHHHHH--hHHHHHHHHHcCCccccCCC
Q 006532 106 TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTE--GPDRIRELIAIGASFDRGED 183 (641)
Q Consensus 106 ~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~~~--~~~~i~~l~~~Gv~~~~~~~ 183 (641)
+|+|+||....+-.-...+||-|++.+.... ..++. .+..+++.++..... ..+.++|++++|+++..+++
T Consensus 3 ~V~ilEkn~~~GkKil~TG~GRCN~TN~~~~-~~~~~------~~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~~e~~ 75 (376)
T TIGR03862 3 EVDVFEAKPSVGRKFLMAGKSGLNLTHSEPL-PRFIE------RYGDAAEWLAPWLEAFDAVALQDWARGLGIETFVGSS 75 (376)
T ss_pred eEEEEeCCCCccceeEEcCCCCcccCCCCch-HHHHH------hcCCchHHHHHHHHhCCHHHHHHHHHHCCCceEECCC
Confidence 7999999987766556666777777664332 22221 122344444433322 24667999999999887777
Q ss_pred CCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEE
Q 006532 184 GNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFI 263 (641)
Q Consensus 184 g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~ 263 (641)
|+++ +.......++.+|...+++ .||+|+.++.|++| + ++ . .++.. .++. ..++
T Consensus 76 grvf--------------P~S~~A~sVv~~L~~~l~~-~gV~i~~~~~V~~i--~-~~---~-~~v~~---~~~~-~~~~ 129 (376)
T TIGR03862 76 GRVF--------------PVEMKAAPLLRAWLKRLAE-QGVQFHTRHRWIGW--Q-GG---T-LRFET---PDGQ-STIE 129 (376)
T ss_pred CEEC--------------CCCCCHHHHHHHHHHHHHH-CCCEEEeCCEEEEE--e-CC---c-EEEEE---CCCc-eEEe
Confidence 7644 2344577899999999988 59999999999998 3 22 2 23332 2222 2589
Q ss_pred cCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecCCCCCCCCCCCCCccce-eeccccCCC
Q 006532 264 SKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFL-ITEAVRGDG 342 (641)
Q Consensus 264 Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l-~~e~~~~~g 342 (641)
|++||+||||.+ ||.+ +.+|+|+.+|.+.|..++.. +|..+.-.-. .+. .+. ....++-..
T Consensus 130 a~~vIlAtGG~s--~p~~----Gs~g~gy~la~~lGh~i~~~-----~PaL~pl~~~--~~~-----~~~~~L~Gv~~~~ 191 (376)
T TIGR03862 130 ADAVVLALGGAS--WSQL----GSDGAWQQVLDQRGVSVAPF-----APANCGFLVD--WSA-----HFASRFAGEPLKR 191 (376)
T ss_pred cCEEEEcCCCcc--cccc----CCCcHHHHHHHHCCCcccCC-----cCeeceEEcc--Cch-----hhHhhcCCCcccc
Confidence 999999999988 7765 67999999999999988653 4443211000 000 000 000111111
Q ss_pred cEE-EeC---CCCccccccccccccCch-hHHHHHHHHHHHhcCCCeEEEeCCC-CChhHHHhh----Ch--hHHHHHH-
Q 006532 343 GIL-YNL---GMERFMPLYDERAELAPR-DVVARSIDDQLKKRNEKYVLLDISH-KPTEKILSH----FP--NIAAECL- 409 (641)
Q Consensus 343 ~~~-vn~---~G~rf~~~~~~~~~~~~r-~~~~~~i~~~~~~~~~~~v~lD~~~-~~~~~~~~~----~~--~~~~~~~- 409 (641)
..+ ++. .|+-....|. --.|- -.+|+.+...+.......+.+|+-. .+.+++.+. .+ ++...+.
T Consensus 192 ~~~~~~~~~~~GellFTh~G---iSGpavl~lS~~~~~~~~~~~~~~i~idf~P~~~~~~l~~~l~~~~~~k~l~~~L~~ 268 (376)
T TIGR03862 192 VNATAGTQQTRGEIVITARG---LEGGLIYALSAALREQIKAGGSANLFLDLLPDLSLEQVTKRLAAPRGKQSLSNHLRK 268 (376)
T ss_pred eEEEeCCeeEeeeEEEECCC---ccHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHhhcccchHHHHHHH
Confidence 111 110 1111111111 00010 1234444333333333447888853 334443321 11 1111111
Q ss_pred HcCCCCC-------------------------CCCeeEee-----eeccccCceE---eCCCCCc-ccCCeeecccccCC
Q 006532 410 KYGLDIT-------------------------SQPIPVVP-----AAHYMCGGVR---AGLQGET-NVRGLYVAGEVACT 455 (641)
Q Consensus 410 ~~G~d~~-------------------------~~~i~v~p-----~~~~~~GGI~---vD~~~~T-~ipGLyAaGe~a~~ 455 (641)
..|+++. .-++++.. .+..|.|||. ||..++. .+||||.|||+.
T Consensus 269 ~~gi~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~v~g~~~~~~A~VT~GGV~~~EI~~~~~Sk~~pgLYf~GEvL-- 346 (376)
T TIGR03862 269 ALGLDGVKRALLREVFPKAAWSQPETLAQTIKALPLPLDGTRPIDEAISTAGGVRQDALDESLMLKARPGVFCAGEML-- 346 (376)
T ss_pred HhCCCHHHHHHHHHHhhccCHHHHHHHHHHHhCCeeeecccCCcceEEEeCCcccHHHcChhhhcccCCCeEEEEEEE--
Confidence 1122210 01223322 3667999997 5656663 599999999997
Q ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHHhh
Q 006532 456 GLHGANRLASNSLLEALVFARRAVQPSIDHK 486 (641)
Q Consensus 456 g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~ 486 (641)
.+.| .+||.+|.+||.+|++||++++.++
T Consensus 347 DvdG--~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 347 DWEA--PTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred eecc--CCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 6766 5789999999999999999988764
No 63
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.67 E-value=4.3e-16 Score=169.65 Aligned_cols=43 Identities=28% Similarity=0.475 Sum_probs=35.7
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGG 126 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~gg 126 (641)
+|||+|||||+||+.||+.|++.| +|+|+||..+ |+++.+.|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~--GG~c~~~gc 45 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKL--GGTCVNVGC 45 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccccc--ccceeccCc
Confidence 589999999999999999999999 9999999753 444444443
No 64
>PTZ00058 glutathione reductase; Provisional
Probab=99.67 E-value=4.6e-16 Score=171.95 Aligned_cols=47 Identities=30% Similarity=0.393 Sum_probs=38.9
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCce
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 127 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi 127 (641)
...+|||+|||||+||+.||+.|++.| +|+||||..+ |+++.+.|.+
T Consensus 45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~--GGtCln~GCi 92 (561)
T PTZ00058 45 PRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYL--GGTCVNVGCV 92 (561)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecccc--cccccccCCC
Confidence 346799999999999999999999999 9999999743 5555555544
No 65
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.67 E-value=6.9e-16 Score=168.18 Aligned_cols=141 Identities=18% Similarity=0.278 Sum_probs=79.3
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHH
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 160 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~ 160 (641)
+|||+|||||+||+.||+.|++.| +|+|+||..+ |+++.+.| |.|......
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~--GG~c~~~g--------------------------ciPsk~l~~ 53 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRV--GGTCVIRG--------------------------CVPKKLMVY 53 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCcc--CceeecCC--------------------------cCchHHHHH
Confidence 599999999999999999999999 9999999643 33444444 334443333
Q ss_pred HHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCC
Q 006532 161 CTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD 240 (641)
Q Consensus 161 ~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~ 240 (641)
..+....++....+|+..... .+. +.......+..-..+...+.+.+.+ .||+++.+ .+..+. .+
T Consensus 54 ~a~~~~~~~~~~~~g~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~-~gV~~~~g-~~~~v~--~~ 118 (446)
T TIGR01424 54 GSTFGGEFEDAAGYGWTVGKA---RFD--------WKKLLQKKDDEIARLSGLYKRLLAN-AGVELLEG-RARLVG--PN 118 (446)
T ss_pred HHHHHHHHhhhHhcCcCCCCC---CcC--------HHHHHHHHHHHHHHHHHHHHHHHHh-CCcEEEEE-EEEEec--CC
Confidence 333333344444555543210 000 0000000000111233344445555 59999877 454432 12
Q ss_pred CCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 241 GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 241 g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
.+ .+. .+|+ .+.+++||+|||+...
T Consensus 119 ----~v---~v~--~~g~--~~~~d~lIiATGs~p~ 143 (446)
T TIGR01424 119 ----TV---EVL--QDGT--TYTAKKILIAVGGRPQ 143 (446)
T ss_pred ----EE---EEe--cCCe--EEEcCEEEEecCCcCC
Confidence 22 221 2343 5899999999998764
No 66
>PLN02546 glutathione reductase
Probab=99.67 E-value=5.6e-16 Score=171.38 Aligned_cols=144 Identities=15% Similarity=0.210 Sum_probs=83.3
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC--------CCCCccccccCceeeccCCCCCHHHHHHHHHHhccC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE--------PHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAY 150 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~--------~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~ 150 (641)
..+|||+|||+|++|+.||+.|++.| +|+|+|+.. -.-|+++.+.|
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~G------------------------- 131 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRG------------------------- 131 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcc-------------------------
Confidence 45699999999999999999999999 999999621 11134444433
Q ss_pred CCCHHHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcce
Q 006532 151 LCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHH 230 (641)
Q Consensus 151 ~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~ 230 (641)
|.|........+....++....+|+.+..... +. +..+....+..-..+...+.+.+++ .||+++.+.
T Consensus 132 -CiPsK~l~~aa~~~~~~~~~~~~g~~~~~~~~--~d--------~~~~~~~k~~~~~~l~~~~~~~l~~-~gV~~i~G~ 199 (558)
T PLN02546 132 -CVPKKLLVYASKYSHEFEESRGFGWKYETEPK--HD--------WNTLIANKNAELQRLTGIYKNILKN-AGVTLIEGR 199 (558)
T ss_pred -hHHHHHHHHHHHHHHHHHhhhhcCcccCCCCC--CC--------HHHHHHHHHHHHHHHHHHHHHHHHh-CCcEEEEeE
Confidence 55666555555555555555566765421110 11 1111100111111233344444554 599998763
Q ss_pred EEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 231 FAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 231 ~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
++.+ + .. .+ .+ +|+ .+.++.||||||+...
T Consensus 200 -a~~v--d-~~---~V---~v----~G~--~~~~D~LVIATGs~p~ 229 (558)
T PLN02546 200 -GKIV--D-PH---TV---DV----DGK--LYTARNILIAVGGRPF 229 (558)
T ss_pred -EEEc--c-CC---EE---EE----CCE--EEECCEEEEeCCCCCC
Confidence 3322 2 11 22 22 344 5899999999998764
No 67
>PLN02507 glutathione reductase
Probab=99.66 E-value=1.5e-15 Score=167.04 Aligned_cols=155 Identities=15% Similarity=0.179 Sum_probs=82.0
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC--CCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE--PHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDET 156 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~--~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~ 156 (641)
..+|||+|||||+||+.||+.|++.| +|+|+|+.. ...+. ...-||.|...+ |.|..
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~-~~~~GGtc~n~G-------------------ciPsK 82 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSES-IGGVGGTCVIRG-------------------CVPKK 82 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccc-CCCccceeeccC-------------------chhHH
Confidence 45799999999999999999999999 999999721 11100 001233332221 44544
Q ss_pred HHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006532 157 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 236 (641)
Q Consensus 157 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~ 236 (641)
...........+....++|+++.... .+. +..........-..+...+.+.+.. .||+++.+ .+..+
T Consensus 83 ~l~~~a~~~~~~~~~~~~G~~~~~~~--~id--------~~~~~~~~~~~~~~~~~~~~~~l~~-~gV~~i~g-~a~~v- 149 (499)
T PLN02507 83 ILVYGATFGGEFEDAKNYGWEINEKV--DFN--------WKKLLQKKTDEILRLNGIYKRLLAN-AGVKLYEG-EGKIV- 149 (499)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCCC--ccC--------HHHHHHHHHHHHHHHHHHHHHHHHh-CCcEEEEE-EEEEe-
Confidence 44333333344455566676542110 010 0000000000001122222233333 58999887 34433
Q ss_pred ecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 237 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 237 ~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
+.+ . +.+. ..+|+...+.+|.||||||+...
T Consensus 150 -d~~----~---v~V~-~~~g~~~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 150 -GPN----E---VEVT-QLDGTKLRYTAKHILIATGSRAQ 180 (499)
T ss_pred -cCC----E---EEEE-eCCCcEEEEEcCEEEEecCCCCC
Confidence 222 1 2222 23566667999999999998664
No 68
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.64 E-value=1.8e-15 Score=165.43 Aligned_cols=33 Identities=42% Similarity=0.523 Sum_probs=30.7
Q ss_pred ccccEEEECccHHHHHHHHHHHhc-C-CeEEEEec
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKH-G-TVAVITKA 113 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~-G-~V~llek~ 113 (641)
.+|||+|||||++|..||+.|++. | +|+||||.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 469999999999999999999997 8 99999984
No 69
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.63 E-value=2.1e-15 Score=165.19 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=36.7
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGG 126 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~gg 126 (641)
.+|||+|||||+||+.||..|++.| +|+|+|+....+ +++.+.|.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~G-G~c~n~gc 48 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLG-GVCLNVGC 48 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccc-ccccCCCc
Confidence 3599999999999999999999999 999999975443 34444443
No 70
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.63 E-value=3.4e-15 Score=163.70 Aligned_cols=155 Identities=16% Similarity=0.206 Sum_probs=82.1
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHH
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 160 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~ 160 (641)
+|||+|||+|+||+.||+.|++.| +|+|||+.....+.+.+..||.|...+ |.|......
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~G-------------------CiPsK~l~~ 62 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVG-------------------CIPKKLMHQ 62 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccC-------------------cCchhHHHH
Confidence 589999999999999999999999 999999854322222223455554332 444443332
Q ss_pred HHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCC
Q 006532 161 CTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD 240 (641)
Q Consensus 161 ~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~ 240 (641)
..+..........+|+.+..... +. +.......+..-..+.......+++ .||+++.+.- .+ .+ .
T Consensus 63 ~a~~~~~~~~~~~~g~~~~~~~~--~d--------~~~~~~~~~~~v~~~~~~~~~~~~~-~~v~~i~G~a--~f-~~-~ 127 (484)
T TIGR01438 63 AALLGQALKDSRNYGWNVEETVK--HD--------WNRLSEAVQNHIGSLNWGYRVALRE-KKVNYENAYA--EF-VD-K 127 (484)
T ss_pred HHHHHHHHhhhhhcCcccCCCcc--cC--------HHHHHHHHHHHHHHHHHHHHHHHhh-CCcEEEEEEE--EE-cC-C
Confidence 22222222333445654431100 00 0000000000011122223333444 5999998742 22 23 2
Q ss_pred CCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 241 GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 241 g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
. . +.+.+ .+|+...+.++.||+|||+....
T Consensus 128 ~---~---v~v~~-~~g~~~~~~~d~lVIATGs~p~~ 157 (484)
T TIGR01438 128 H---R---IKATN-KKGKEKIYSAERFLIATGERPRY 157 (484)
T ss_pred C---E---EEEec-cCCCceEEEeCEEEEecCCCCCC
Confidence 2 2 23322 24444579999999999987643
No 71
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.62 E-value=3.9e-15 Score=163.04 Aligned_cols=45 Identities=24% Similarity=0.384 Sum_probs=35.7
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCce
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 127 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi 127 (641)
+|||+||||||||+.||+.|++.| +|+|||+....|| ++.+.|.+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG-~c~~~gci 48 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGG-TCLNVGCM 48 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceee-eeccCccc
Confidence 589999999999999999999999 9999997543333 34444433
No 72
>PLN02661 Putative thiazole synthesis
Probab=99.62 E-value=1.2e-14 Score=148.56 Aligned_cols=145 Identities=23% Similarity=0.323 Sum_probs=98.9
Q ss_pred ccccccEEEECccHHHHHHHHHHHhc-C-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHH
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKH-G-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDET 156 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~-G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~ 156 (641)
...++||+|||+|++|++||+.|++. | +|+||||....+|+.. ..|.+ .+.-
T Consensus 89 ~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~-~gg~l------------------------~~~~- 142 (357)
T PLN02661 89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAW-LGGQL------------------------FSAM- 142 (357)
T ss_pred hcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccccee-eCccc------------------------cccc-
Confidence 34579999999999999999999986 7 9999999876654322 11111 0000
Q ss_pred HHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006532 157 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 236 (641)
Q Consensus 157 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~ 236 (641)
.++. ...++++++|++|++. ++ +.. .. ....+...|.+++.++.|+++++++.+++|+
T Consensus 143 ---vv~~--~a~e~LeElGV~fd~~-dg-y~v----------v~-----ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI 200 (357)
T PLN02661 143 ---VVRK--PAHLFLDELGVPYDEQ-EN-YVV----------IK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLI 200 (357)
T ss_pred ---cccc--HHHHHHHHcCCCcccC-CC-eeE----------ec-----chHHHHHHHHHHHHhcCCCEEEeCeEeeeEE
Confidence 0111 1245788899998653 21 211 11 1235667888877766799999999999999
Q ss_pred ecCCCCCceEEEEEEE------ecCC---CeEEEEEcCEEEEcCCCCC
Q 006532 237 TTLDGPDAVCHGVDTL------NVET---QEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 237 ~~~~g~~~~v~Gv~~~------~~~~---g~~~~i~Ak~VVlAtGg~~ 275 (641)
.+ ++ +|.|+++. +..+ .+...|+||+||+|||+.+
T Consensus 201 ~~-~g---rVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g 244 (357)
T PLN02661 201 VK-GD---RVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDG 244 (357)
T ss_pred ec-CC---EEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCC
Confidence 87 55 89999863 1112 1345799999999999544
No 73
>PRK06116 glutathione reductase; Validated
Probab=99.61 E-value=4.6e-15 Score=162.12 Aligned_cols=43 Identities=35% Similarity=0.453 Sum_probs=35.4
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG 125 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~g 125 (641)
.+|||+|||||+||+.||+.|++.| +|+|+|+... |+++.+.|
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~--GG~c~n~g 46 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRL--GGTCVNVG 46 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccch--hhhhhccC
Confidence 3699999999999999999999999 9999999743 33434444
No 74
>PRK06370 mercuric reductase; Validated
Probab=99.59 E-value=1.5e-14 Score=158.72 Aligned_cols=36 Identities=36% Similarity=0.433 Sum_probs=32.9
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
+.+|||+|||||+||+.||+.|++.| +|+|+||...
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~ 39 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLL 39 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 34699999999999999999999999 9999999754
No 75
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.58 E-value=2.4e-14 Score=140.91 Aligned_cols=286 Identities=20% Similarity=0.293 Sum_probs=155.8
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~ 158 (641)
..+||.+|||||..|+++|.++++.| +|.|+|...-. |+++.+.| |-|..+.
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~l-GGTCVn~G--------------------------CVPKKvm 70 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGL-GGTCVNVG--------------------------CVPKKVM 70 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCc-CceEEeec--------------------------cccceeE
Confidence 45899999999999999999999999 99999986433 33444434 4455555
Q ss_pred HHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006532 159 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 238 (641)
Q Consensus 159 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 238 (641)
.++....+.++...++|.+.... +.+. |+.+..-.+. --.-...+++...++.+|+++++.- .+. +
T Consensus 71 ~~~a~~~~~~~da~~yG~~~~~~--~~fd--------W~~ik~krda-yi~RLngIY~~~L~k~~V~~i~G~a--~f~-~ 136 (478)
T KOG0405|consen 71 WYAADYSEEMEDAKDYGFPINEE--GSFD--------WKVIKQKRDA-YILRLNGIYKRNLAKAAVKLIEGRA--RFV-S 136 (478)
T ss_pred EehhhhhHHhhhhhhcCCccccc--cCCc--------HHHHHhhhhH-HHHHHHHHHHhhccccceeEEeeeE--EEc-C
Confidence 55555555566666777766422 2221 1111100010 0011245566655556899888752 232 2
Q ss_pred CCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCC-CcccCccchhHHHHh-------cCCeeeccccccc
Q 006532 239 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTT-NPLVATGDGMAMAHR-------AQAVISNMEFVQF 310 (641)
Q Consensus 239 ~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~-~~~~~~Gdg~~~a~~-------aGa~l~~~e~~q~ 310 (641)
++ .| -| +..+|+...+.|+.+++||||.+. +|+-. .....+.||+.-..+ .||.++..||...
T Consensus 137 -~~---~v-~V---~~~d~~~~~Ytak~iLIAtGg~p~-~PnIpG~E~gidSDgff~Lee~Pkr~vvvGaGYIavE~Agi 207 (478)
T KOG0405|consen 137 -PG---EV-EV---EVNDGTKIVYTAKHILIATGGRPI-IPNIPGAELGIDSDGFFDLEEQPKRVVVVGAGYIAVEFAGI 207 (478)
T ss_pred -CC---ce-EE---EecCCeeEEEecceEEEEeCCccC-CCCCCchhhccccccccchhhcCceEEEEccceEEEEhhhH
Confidence 33 22 12 334676677999999999999873 34211 122456677655544 4666666665443
Q ss_pred cceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEeCC
Q 006532 311 HPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDIS 390 (641)
Q Consensus 311 ~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~lD~~ 390 (641)
+.. .| ++ -.++ -..+.++..+++ .++..+.+++...+ +-+.-.
T Consensus 208 ~~g----Lg---------------se------thlf-iR~~kvLR~FD~--------~i~~~v~~~~~~~g---invh~~ 250 (478)
T KOG0405|consen 208 FAG----LG---------------SE------THLF-IRQEKVLRGFDE--------MISDLVTEHLEGRG---INVHKN 250 (478)
T ss_pred Hhh----cC---------------Ce------eEEE-EecchhhcchhH--------HHHHHHHHHhhhcc---eeeccc
Confidence 211 00 00 0111 112334444433 24444455554432 111110
Q ss_pred CCChhHHH-------------hhChhHHHHHHHcCCCCCCCCee--EeeeeccccCceEeCCCCCcccCCeeeccccc
Q 006532 391 HKPTEKIL-------------SHFPNIAAECLKYGLDITSQPIP--VVPAAHYMCGGVRAGLQGETNVRGLYVAGEVA 453 (641)
Q Consensus 391 ~~~~~~~~-------------~~~~~~~~~~~~~G~d~~~~~i~--v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a 453 (641)
... .++. ..++.++.++...|.+|....+. -...-....|-|.||+..+|+||++||+||++
T Consensus 251 s~~-~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~ 327 (478)
T KOG0405|consen 251 SSV-TKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVT 327 (478)
T ss_pred ccc-eeeeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEecccc
Confidence 000 0000 11223344455667777654322 22223345688999999999999999999996
No 76
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.2e-14 Score=148.04 Aligned_cols=115 Identities=19% Similarity=0.273 Sum_probs=75.0
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-C-eEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~-V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~ 158 (641)
..+||+|||||||||+||+.+++.+ + ++|+|+.... |...... -+
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~g-g~~~~~~-~v------------------------------- 48 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPG-GQLTKTT-DV------------------------------- 48 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcC-Cccccce-ee-------------------------------
Confidence 4689999999999999999999999 8 6777776542 2111100 00
Q ss_pred HHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006532 159 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 238 (641)
Q Consensus 159 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 238 (641)
.+++- +.....|..+...+.+++.. .++++.. ..|..+...
T Consensus 49 ---------------enypg----------------------~~~~~~g~~L~~~~~~~a~~-~~~~~~~-~~v~~v~~~ 89 (305)
T COG0492 49 ---------------ENYPG----------------------FPGGILGPELMEQMKEQAEK-FGVEIVE-DEVEKVELE 89 (305)
T ss_pred ---------------cCCCC----------------------CccCCchHHHHHHHHHHHhh-cCeEEEE-EEEEEEeec
Confidence 00000 01234577888888888876 6999888 566666543
Q ss_pred CCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCC
Q 006532 239 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIY 278 (641)
Q Consensus 239 ~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~ 278 (641)
++ .....+.+++ ++||.||+|||...+..
T Consensus 90 ~~--------~F~v~t~~~~---~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 90 GG--------PFKVKTDKGT---YEAKAVIIATGAGARKL 118 (305)
T ss_pred Cc--------eEEEEECCCe---EEEeEEEECcCCcccCC
Confidence 11 1222334453 99999999999877543
No 77
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.57 E-value=3.4e-14 Score=156.05 Aligned_cols=31 Identities=42% Similarity=0.620 Sum_probs=30.2
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEe
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITK 112 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek 112 (641)
+|||+|||||+||++||+.|++.| +|+|||+
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 699999999999999999999999 9999998
No 78
>PRK14694 putative mercuric reductase; Provisional
Probab=99.57 E-value=6.3e-14 Score=153.79 Aligned_cols=45 Identities=27% Similarity=0.392 Sum_probs=37.1
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCc
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGG 126 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~gg 126 (641)
...|||+|||||+||+.||+.|++.| +|+|+|++.+ |+++.+.|.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~--GGtc~n~Gc 49 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGTI--GGTCVNIGC 49 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcccc--ccceecCCc
Confidence 45799999999999999999999999 9999999753 334445443
No 79
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.57 E-value=2.4e-14 Score=157.16 Aligned_cols=34 Identities=35% Similarity=0.565 Sum_probs=32.3
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.+|||+|||||+||+.||+.|++.| +|+|+||..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 4699999999999999999999999 999999977
No 80
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.57 E-value=3.1e-14 Score=156.44 Aligned_cols=44 Identities=27% Similarity=0.487 Sum_probs=36.3
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGG 126 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~gg 126 (641)
..|||+|||||+||+.||+.|++.| +|+|+|+..+ |+++.+.|.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~--GG~c~~~gc 47 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKL--GGTCLHKGC 47 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCC--CcceEcCCc
Confidence 3699999999999999999999999 9999999743 444444443
No 81
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.57 E-value=3.5e-14 Score=155.85 Aligned_cols=40 Identities=40% Similarity=0.490 Sum_probs=35.0
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCc
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 119 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~ 119 (641)
+..|||+|||||+||+.||+.|++.| +|+|+||....||.
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~ 43 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGG 43 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccc
Confidence 34699999999999999999999999 99999997655443
No 82
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.56 E-value=4.2e-14 Score=155.17 Aligned_cols=44 Identities=27% Similarity=0.407 Sum_probs=36.0
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCce
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 127 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi 127 (641)
+|||+|||||+||+.||+.|++.| +|+|+|++.. |+++.+.|.+
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~--GG~c~~~gci 48 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYW--GGVCLNVGCI 48 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC--CCceecCCcc
Confidence 589999999999999999999999 9999999754 3344444433
No 83
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.56 E-value=6.5e-14 Score=140.29 Aligned_cols=144 Identities=22% Similarity=0.261 Sum_probs=102.3
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~ 159 (641)
.++||+|||||+||++||+.|++.| +|+|+||....+|.. + .||.. .+...+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~-~-~gg~~-----------------------~~~~~v-- 76 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM-W-GGGML-----------------------FNKIVV-- 76 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc-c-cCccc-----------------------cccccc--
Confidence 4689999999999999999999999 999999987665432 1 12210 000000
Q ss_pred HHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006532 160 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 239 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~ 239 (641)
..+..+++.++|++|....++.+ . ..+..+...|.+.+.+ .|+++++++.|+++..++
T Consensus 77 ----~~~~~~~l~~~gv~~~~~~~g~~---------------~--vd~~~l~~~L~~~A~~-~Gv~I~~~t~V~dl~~~~ 134 (257)
T PRK04176 77 ----QEEADEILDEFGIRYKEVEDGLY---------------V--ADSVEAAAKLAAAAID-AGAKIFNGVSVEDVILRE 134 (257)
T ss_pred ----hHHHHHHHHHCCCCceeecCcce---------------e--ccHHHHHHHHHHHHHH-cCCEEEcCceeceeeEeC
Confidence 11346778889998865333211 1 1246788889988887 599999999999998765
Q ss_pred CCCCceEEEEEEEecC------CCeEEEEEcCEEEEcCCCCCc
Q 006532 240 DGPDAVCHGVDTLNVE------TQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 240 ~g~~~~v~Gv~~~~~~------~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
++ +|.|+++.... +.+...|+|+.||+|||+.+.
T Consensus 135 ~g---~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 135 DP---RVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE 174 (257)
T ss_pred CC---cEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence 55 78898875321 123468999999999997773
No 84
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.54 E-value=5e-14 Score=153.62 Aligned_cols=45 Identities=31% Similarity=0.404 Sum_probs=36.8
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGG 126 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~gg 126 (641)
.|||+|||||+||+.||+.|++.| +|+|+|+.+..-|+++.+.|.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gc 48 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGC 48 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccc
Confidence 589999999999999999999999 999999976433444444443
No 85
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.54 E-value=9.7e-14 Score=152.05 Aligned_cols=148 Identities=15% Similarity=0.153 Sum_probs=80.0
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHHHH
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCT 162 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~~ 162 (641)
||+|||+|++|+.||..|++.| +|+|+||... |+++.+.|. .|........
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~--gG~c~~~gc--------------------------iPsK~l~~~a 54 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDGL--GGAAVLTDC--------------------------VPSKTLIATA 54 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccCC--CCcccccCC--------------------------cchHHHHHHH
Confidence 8999999999999999999999 9999999764 333333332 2333222222
Q ss_pred HhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEE--ecCC
Q 006532 163 EGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL--TTLD 240 (641)
Q Consensus 163 ~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~--~~~~ 240 (641)
+....+.....+|+.........+. +.......+..-..+...+.+.+++ .||+++.+. +..+. .+ .
T Consensus 55 ~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~-~gV~~~~g~-~~~~~~~~~-~ 123 (466)
T PRK07845 55 EVRTELRRAAELGIRFIDDGEARVD--------LPAVNARVKALAAAQSADIRARLER-EGVRVIAGR-GRLIDPGLG-P 123 (466)
T ss_pred HHHHHHHHHHhCCcccccCcccccC--------HHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEEEE-EEEeecccC-C
Confidence 2233344455666653200000000 0000000000011122334455655 599999885 33222 22 2
Q ss_pred CCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 241 GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 241 g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
. + +.+. ..+|+...+.++.||+|||+....
T Consensus 124 ~---~---v~V~-~~~g~~~~~~~d~lViATGs~p~~ 153 (466)
T PRK07845 124 H---R---VKVT-TADGGEETLDADVVLIATGASPRI 153 (466)
T ss_pred C---E---EEEE-eCCCceEEEecCEEEEcCCCCCCC
Confidence 2 2 2222 234554568999999999987753
No 86
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.52 E-value=3.5e-14 Score=157.29 Aligned_cols=114 Identities=24% Similarity=0.309 Sum_probs=75.5
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~ 158 (641)
...+||+|||||+||++||+.|++.| +|+|++.. .+|..... -++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~-~~~------------------------------- 255 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDT-VGI------------------------------- 255 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccC-cCc-------------------------------
Confidence 44699999999999999999999999 99999752 22211000 000
Q ss_pred HHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006532 159 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 238 (641)
Q Consensus 159 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 238 (641)
..+ .+. ....+..+...+.+.+++ .|++++.++.|+++..+
T Consensus 256 ----------~~~--~~~--------------------------~~~~~~~l~~~l~~~l~~-~gv~i~~~~~V~~I~~~ 296 (515)
T TIGR03140 256 ----------ENL--ISV--------------------------PYTTGSQLAANLEEHIKQ-YPIDLMENQRAKKIETE 296 (515)
T ss_pred ----------ccc--ccc--------------------------CCCCHHHHHHHHHHHHHH-hCCeEEcCCEEEEEEec
Confidence 000 000 012355677777778877 49999999999998765
Q ss_pred CCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 239 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 239 ~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
++. . .+. ..+|+ .+.++.||+|||+..+
T Consensus 297 ~~~----~-~v~---~~~g~--~i~~d~lIlAtGa~~~ 324 (515)
T TIGR03140 297 DGL----I-VVT---LESGE--VLKAKSVIVATGARWR 324 (515)
T ss_pred CCe----E-EEE---ECCCC--EEEeCEEEECCCCCcC
Confidence 322 1 122 23454 5899999999998753
No 87
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.52 E-value=5.2e-14 Score=157.73 Aligned_cols=47 Identities=26% Similarity=0.408 Sum_probs=37.8
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCc
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGG 126 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~gg 126 (641)
+.+|||+|||+|++|..||+.|++.| +|+|||++...-|+++.+.|.
T Consensus 114 ~~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GC 161 (659)
T PTZ00153 114 DEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGC 161 (659)
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCC
Confidence 34799999999999999999999999 999999753223555555553
No 88
>PRK13748 putative mercuric reductase; Provisional
Probab=99.51 E-value=2.3e-13 Score=153.09 Aligned_cols=43 Identities=30% Similarity=0.456 Sum_probs=35.7
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG 125 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~g 125 (641)
.+|||+|||||+||+.||+.|++.| +|+|||+..+ |+++.+.|
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~--GG~c~n~g 140 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTI--GGTCVNVG 140 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCcc--eeeccccC
Confidence 3699999999999999999999999 9999999743 33444444
No 89
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.50 E-value=2.2e-13 Score=149.52 Aligned_cols=34 Identities=44% Similarity=0.586 Sum_probs=31.5
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.+|||+|||||+||++||+.|++.| +|+|||+..
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 36 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGP 36 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 3599999999999999999999999 999999943
No 90
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.50 E-value=4.1e-13 Score=147.42 Aligned_cols=42 Identities=36% Similarity=0.499 Sum_probs=34.3
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG 125 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~g 125 (641)
.|||+|||||+||+.||+.|++.| +|+|||+ ...|| ++.+.|
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG-~~~~~g 43 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGG-TCLNVG 43 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCC-ceeecC
Confidence 389999999999999999999999 9999999 43444 333334
No 91
>PRK14727 putative mercuric reductase; Provisional
Probab=99.50 E-value=1.3e-13 Score=151.45 Aligned_cols=44 Identities=30% Similarity=0.448 Sum_probs=36.4
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG 125 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~g 125 (641)
..|||+|||+|+||+.||+.|++.| +|+|+|+....|| ++.+.|
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG-~c~n~G 59 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGG-CCVNVG 59 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccee-Eecccc
Confidence 4689999999999999999999999 9999999754443 334444
No 92
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.49 E-value=1.2e-13 Score=151.59 Aligned_cols=43 Identities=33% Similarity=0.546 Sum_probs=35.4
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCce
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 127 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi 127 (641)
|||+|||||+||+.||+.|++.| +|+|+||... |+++.+.|.+
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~--GG~c~n~gci 44 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPL--GGTCVNVGCV 44 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcc--cCCeeeecEE
Confidence 79999999999999999999999 9999999763 3334444433
No 93
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.49 E-value=4.1e-13 Score=124.81 Aligned_cols=141 Identities=21% Similarity=0.270 Sum_probs=101.4
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~ 159 (641)
.+.||+|||+||+||+||++||++| ||+|+|+....+|+. | .||+.. +.-.++
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~-w-~GGmlf-----------------------~~iVv~- 82 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGI-W-GGGMLF-----------------------NKIVVR- 82 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcc-c-cccccc-----------------------ceeeec-
Confidence 3679999999999999999999999 999999988776644 2 233311 111110
Q ss_pred HHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006532 160 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 239 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~ 239 (641)
.++-+.|++.|+++...++|.+.. .+..+...|...+.+ .|++|++.+.|.+++..+
T Consensus 83 -----~~a~~iL~e~gI~ye~~e~g~~v~-----------------ds~e~~skl~~~a~~-aGaki~n~~~veDvi~r~ 139 (262)
T COG1635 83 -----EEADEILDEFGIRYEEEEDGYYVA-----------------DSAEFASKLAARALD-AGAKIFNGVSVEDVIVRD 139 (262)
T ss_pred -----chHHHHHHHhCCcceecCCceEEe-----------------cHHHHHHHHHHHHHh-cCceeeecceEEEEEEec
Confidence 122456778899998777763321 245677788877777 599999999999999875
Q ss_pred CCCCceEEEEEEEecC------CCeEEEEEcCEEEEcCCC
Q 006532 240 DGPDAVCHGVDTLNVE------TQEVVRFISKVTLLASGG 273 (641)
Q Consensus 240 ~g~~~~v~Gv~~~~~~------~g~~~~i~Ak~VVlAtGg 273 (641)
+. +|+|+++.-+. .=....|+|+.||-|||-
T Consensus 140 ~~---rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGH 176 (262)
T COG1635 140 DP---RVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGH 176 (262)
T ss_pred CC---ceEEEEEecchhhhcccccCcceeeEEEEEeCCCC
Confidence 53 79999874211 112457999999999993
No 94
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.49 E-value=4.3e-13 Score=125.84 Aligned_cols=144 Identities=22% Similarity=0.265 Sum_probs=90.6
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~ 158 (641)
..++||+|||+|+|||+||+.|++.| ||+|+|+....+|... .||+.... +.
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~--~Gg~lf~~-------------------iV------ 67 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW--GGGMLFNK-------------------IV------ 67 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT--S-CTT----------------------EE------
T ss_pred hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc--ccccccch-------------------hh------
Confidence 34799999999999999999999999 9999999876655432 12221000 00
Q ss_pred HHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006532 159 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 238 (641)
Q Consensus 159 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 238 (641)
.+ .+....|+++|+++....+|-+. ..+..+...|..++.+ .|++|++.+.|.+++..
T Consensus 68 --Vq--~~a~~iL~elgi~y~~~~~g~~v-----------------~d~~~~~s~L~s~a~~-aGakifn~~~vEDvi~r 125 (230)
T PF01946_consen 68 --VQ--EEADEILDELGIPYEEYGDGYYV-----------------ADSVEFTSTLASKAID-AGAKIFNLTSVEDVIVR 125 (230)
T ss_dssp --EE--TTTHHHHHHHT---EE-SSEEEE-----------------S-HHHHHHHHHHHHHT-TTEEEEETEEEEEEEEE
T ss_pred --hh--hhHHHHHHhCCceeEEeCCeEEE-----------------EcHHHHHHHHHHHHhc-CCCEEEeeeeeeeeEEE
Confidence 00 01234567789988765444221 1255677888888887 69999999999999987
Q ss_pred CCCCCceEEEEEEEecC------CCeEEEEEcCEEEEcCCCCC
Q 006532 239 LDGPDAVCHGVDTLNVE------TQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 239 ~~g~~~~v~Gv~~~~~~------~g~~~~i~Ak~VVlAtGg~~ 275 (641)
+++ +|.|+++.-+. .=....|+||.||-|||--+
T Consensus 126 ~~~---rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda 165 (230)
T PF01946_consen 126 EDD---RVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA 165 (230)
T ss_dssp CSC---EEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred cCC---eEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence 545 99999875321 22456899999999999444
No 95
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.48 E-value=3.4e-13 Score=147.58 Aligned_cols=42 Identities=33% Similarity=0.539 Sum_probs=35.0
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCce
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 127 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi 127 (641)
+|+|||||+||+.||..|++.| +|+||||+.. |+++.+.|.+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~--GG~c~n~gci 44 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL--GGTCLNEGCM 44 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc--cccCCCCccc
Confidence 7999999999999999999999 9999999764 4455555533
No 96
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.48 E-value=7.4e-13 Score=132.18 Aligned_cols=144 Identities=21% Similarity=0.261 Sum_probs=99.9
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~ 159 (641)
.++||+|||||+|||+||+.|++.| +|+|+||....++.+ + .+|..... ....
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~-~-~gg~~~~~------------------~~~~------ 73 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS-W-GGGMLFSK------------------IVVE------ 73 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc-c-CCCcceec------------------cccc------
Confidence 4699999999999999999999999 999999998765543 2 12221000 0000
Q ss_pred HHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006532 160 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 239 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~ 239 (641)
....++++++|+++....++.+. .....+...|.+.+.+ .|+++++++.|.+++.++
T Consensus 74 -----~~~~~~l~~~gi~~~~~~~g~~~-----------------~~~~el~~~L~~~a~e-~GV~I~~~t~V~dli~~~ 130 (254)
T TIGR00292 74 -----KPAHEILDEFGIRYEDEGDGYVV-----------------ADSAEFISTLASKALQ-AGAKIFNGTSVEDLITRD 130 (254)
T ss_pred -----chHHHHHHHCCCCeeeccCceEE-----------------eeHHHHHHHHHHHHHH-cCCEEECCcEEEEEEEeC
Confidence 12345677888888654332111 1234678888888887 599999999999999864
Q ss_pred CCCCceEEEEEEEecC------CCeEEEEEcCEEEEcCCCCC
Q 006532 240 DGPDAVCHGVDTLNVE------TQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 240 ~g~~~~v~Gv~~~~~~------~g~~~~i~Ak~VVlAtGg~~ 275 (641)
++ .+|.|+++.... ..+...|+|+.||.|||..+
T Consensus 131 ~~--~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 131 DT--VGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred CC--CceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence 42 258898873210 11356899999999999776
No 97
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.47 E-value=1.5e-11 Score=134.39 Aligned_cols=152 Identities=25% Similarity=0.267 Sum_probs=87.6
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCC--ccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHH
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES--NTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g--~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~ 159 (641)
|||+|||+|+||+.||..+++.| +|+|+|+.....| .+..+.||+.... +..+ +..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~--------l~rE-ida------------ 59 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGI--------LVKE-IDA------------ 59 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccch--------hhhh-hhc------------
Confidence 69999999999999999999999 9999998743222 2222334432110 0000 000
Q ss_pred HHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006532 160 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 239 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~ 239 (641)
............++.|.... .....+...+| .......+...+.+.+++..+++++.+ .|++++.++
T Consensus 60 ---LGG~~~~~~d~~~i~~r~ln-----~skgpAV~~~R----aQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~ 126 (617)
T TIGR00136 60 ---LGGLMGKAADKAGLQFRVLN-----SSKGPAVRATR----AQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILED 126 (617)
T ss_pred ---ccchHHHHHHhhceeheecc-----cCCCCcccccH----HhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEec
Confidence 00000111112222222100 00000000111 112345677788888887678999866 788887653
Q ss_pred CCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 240 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 240 ~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
++ ++.||.+. +|. .|.|+.||+|||.|.+
T Consensus 127 ~g---~V~GV~t~---~G~--~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 127 ND---EIKGVVTQ---DGL--KFRAKAVIITTGTFLR 155 (617)
T ss_pred CC---cEEEEEEC---CCC--EEECCEEEEccCcccC
Confidence 44 68888763 454 6999999999999964
No 98
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.47 E-value=2.9e-13 Score=149.13 Aligned_cols=32 Identities=41% Similarity=0.668 Sum_probs=30.5
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEec
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~ 113 (641)
.|||+|||||+||+.||+.|++.| +|+|||+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 589999999999999999999999 99999974
No 99
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.47 E-value=2.9e-13 Score=147.50 Aligned_cols=46 Identities=30% Similarity=0.435 Sum_probs=37.2
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCce
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 127 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi 127 (641)
+|||+|||||+||++||+.|++.| +|+|+||....-|+++.+.|.+
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gci 49 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCI 49 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccc
Confidence 599999999999999999999999 9999999863224444444443
No 100
>PRK07846 mycothione reductase; Reviewed
Probab=99.46 E-value=5.7e-13 Score=145.17 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=32.7
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCce
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 127 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi 127 (641)
+|||+|||||++|..||..+ .| +|+||||... |+++.+.|.+
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~~--GGtC~n~GCi 43 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGTF--GGTCLNVGCI 43 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCeEEEEeCCCC--CCcccCcCcc
Confidence 38999999999999998764 59 9999999754 4455555533
No 101
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.7e-12 Score=127.49 Aligned_cols=83 Identities=25% Similarity=0.364 Sum_probs=69.2
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHH
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 157 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~ 157 (641)
...+||.+|||||.+||+||-+|+..| +|.++|--.+..-++.|--||.|...+ |.|..+
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVG-------------------CIPKKL 76 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVG-------------------CIPKKL 76 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecc-------------------cccHHH
Confidence 456899999999999999999999999 999999766555566777788877665 778888
Q ss_pred HHHHHHhHHHHHHHHHcCCcccc
Q 006532 158 RVVCTEGPDRIRELIAIGASFDR 180 (641)
Q Consensus 158 ~~~~~~~~~~i~~l~~~Gv~~~~ 180 (641)
...+....+++....++|...+.
T Consensus 77 MHQAallG~al~da~kyGW~~~e 99 (503)
T KOG4716|consen 77 MHQAALLGEALHDARKYGWNVDE 99 (503)
T ss_pred HHHHHHHHHHHHHHHhhCCCCcc
Confidence 88888888888888888887663
No 102
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.46 E-value=5.5e-13 Score=133.07 Aligned_cols=151 Identities=16% Similarity=0.231 Sum_probs=86.4
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~ 159 (641)
.+|||+|||+||+|..||+.+++.| +.+.|||....+ +++.+.|.+..-. +.+......
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LG-GTcLnvGcIPSKA-------------------LL~nSh~yh 97 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLG-GTCLNVGCIPSKA-------------------LLNNSHLYH 97 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccC-ceeeeccccccHH-------------------HhhhhHHHH
Confidence 5799999999999999999999999 999999977654 4555556542100 000111111
Q ss_pred HHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006532 160 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 239 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~ 239 (641)
++++ +.+++.|+++..- .+.+ ..+....+..-..+...+...+++ .+|+++.++ .-..+.
T Consensus 98 ~~q~-----~~~~~rGi~vs~~---~~dl--------~~~~~~k~~~vk~Lt~gi~~lfkk-nkV~~~kG~---gsf~~p 157 (506)
T KOG1335|consen 98 EAQH-----EDFASRGIDVSSV---SLDL--------QAMMKAKDNAVKQLTGGIENLFKK-NKVTYVKGF---GSFLDP 157 (506)
T ss_pred HHhh-----hHHHhcCccccce---ecCH--------HHHHHHHHHHHHHHhhHHHHHhhh-cCeEEEeee---EeecCC
Confidence 1111 1445667665421 0110 000111111223344444445554 588888774 223332
Q ss_pred CCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCC
Q 006532 240 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYP 279 (641)
Q Consensus 240 ~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~ 279 (641)
+ +| .+ ...+|+...|.||.+|+|||+--..||
T Consensus 158 ~----~V---~v-~k~dg~~~ii~aKnIiiATGSeV~~~P 189 (506)
T KOG1335|consen 158 N----KV---SV-KKIDGEDQIIKAKNIIIATGSEVTPFP 189 (506)
T ss_pred c----eE---EE-eccCCCceEEeeeeEEEEeCCccCCCC
Confidence 2 22 22 235678889999999999997544455
No 103
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.45 E-value=3.3e-13 Score=150.65 Aligned_cols=72 Identities=22% Similarity=0.183 Sum_probs=48.6
Q ss_pred HHcCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhc
Q 006532 409 LKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 488 (641)
Q Consensus 409 ~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~ 488 (641)
...|..|+.+.++-. ......|.|.||++++|++||+||+|||++.+. ..+..|+-.|++||.++.+|+..
T Consensus 240 ~a~G~~Pn~~l~~~~-l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~--------~~v~~A~~~G~~Aa~~i~~~l~~ 310 (555)
T TIGR03143 240 VFVGYAPSSELFKGV-VELDKRGYIPTNEDMETNVPGVYAAGDLRPKEL--------RQVVTAVADGAIAATSAERYVKE 310 (555)
T ss_pred EEeCCCCChhHHhhh-cccCCCCeEEeCCccccCCCCEEEceeccCCCc--------chheeHHhhHHHHHHHHHHHHHh
Confidence 345666655433211 111124779999999999999999999962111 12456888899999999988854
Q ss_pred c
Q 006532 489 T 489 (641)
Q Consensus 489 ~ 489 (641)
.
T Consensus 311 ~ 311 (555)
T TIGR03143 311 L 311 (555)
T ss_pred h
Confidence 3
No 104
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.45 E-value=3e-11 Score=132.37 Aligned_cols=153 Identities=24% Similarity=0.303 Sum_probs=88.2
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC-CCCCccc-cccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE-PHESNTN-YAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 157 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~-~~~g~s~-~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~ 157 (641)
.+|||+|||||+||+.||+.|++.| +|+|||+.. ..++-++ -+.||+.. .++.+.+..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~ak---------g~lvrEida---------- 63 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAK---------GHLVREIDA---------- 63 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchh---------hHHHHHHHh----------
Confidence 4699999999999999999999999 999999874 2222111 12233210 011110100
Q ss_pred HHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006532 158 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 158 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
............++.|..... .........| .......+...+.+.+.+..|++++. ..|++++.
T Consensus 64 -----lGg~~g~~~d~~giq~r~ln~-----skGpAV~s~R----aQiDr~ly~kaL~e~L~~~~nV~I~q-~~V~~Li~ 128 (618)
T PRK05192 64 -----LGGEMGKAIDKTGIQFRMLNT-----SKGPAVRALR----AQADRKLYRAAMREILENQPNLDLFQ-GEVEDLIV 128 (618)
T ss_pred -----cCCHHHHHHhhccCceeeccc-----CCCCceeCcH----HhcCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEe
Confidence 000111222333444321100 0000000011 11224556777878887666899865 57899987
Q ss_pred cCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 238 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 238 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
+ ++ +|.||... +|. .|.|+.||+|||.|.+
T Consensus 129 e-~g---rV~GV~t~---dG~--~I~Ak~VIlATGTFL~ 158 (618)
T PRK05192 129 E-NG---RVVGVVTQ---DGL--EFRAKAVVLTTGTFLR 158 (618)
T ss_pred c-CC---EEEEEEEC---CCC--EEECCEEEEeeCcchh
Confidence 6 45 78888763 453 6999999999998764
No 105
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.45 E-value=6.6e-13 Score=147.31 Aligned_cols=114 Identities=20% Similarity=0.296 Sum_probs=76.6
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~ 158 (641)
...|||+|||||+||++||+.|++.| +|+|+++. .+|...... ++
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~-~~------------------------------- 254 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTM-GI------------------------------- 254 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccC-cc-------------------------------
Confidence 44699999999999999999999999 99999764 222110000 00
Q ss_pred HHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006532 159 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 238 (641)
Q Consensus 159 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 238 (641)
+. -.++ ....+..+...|.+.+++ .|++++.++.|+++..+
T Consensus 255 ----------~~--~~~~--------------------------~~~~~~~l~~~l~~~~~~-~gv~i~~~~~V~~I~~~ 295 (517)
T PRK15317 255 ----------EN--FISV--------------------------PETEGPKLAAALEEHVKE-YDVDIMNLQRASKLEPA 295 (517)
T ss_pred ----------cc--cCCC--------------------------CCCCHHHHHHHHHHHHHH-CCCEEEcCCEEEEEEec
Confidence 00 0000 012355677888888877 49999999999999775
Q ss_pred CCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 239 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 239 ~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
++. . -+. ..+|+ .+.++.||+|||+..+
T Consensus 296 ~~~----~-~V~---~~~g~--~i~a~~vViAtG~~~r 323 (517)
T PRK15317 296 AGL----I-EVE---LANGA--VLKAKTVILATGARWR 323 (517)
T ss_pred CCe----E-EEE---ECCCC--EEEcCEEEECCCCCcC
Confidence 321 1 122 23454 5899999999998654
No 106
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.44 E-value=2.6e-12 Score=137.95 Aligned_cols=149 Identities=22% Similarity=0.286 Sum_probs=85.7
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~ 159 (641)
.+|||+|||+||||++||+.|++.| +|+|+||....+..... .+++... ..+... .....+ +
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~-~~~~~~~-----~l~~l~--------~~~~~~-i-- 64 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC-GGGLSPR-----ALEELI--------PDFDEE-I-- 64 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc-cceechh-----hHHHhC--------CCcchh-h--
Confidence 4699999999999999999999999 99999998876654333 2222100 000000 000000 0
Q ss_pred HHHHhHHHHHHHHHcCCccccCCCCCccccc--CCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006532 160 VCTEGPDRIRELIAIGASFDRGEDGNLHLAR--EGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~--~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
..... +..+... ........ ..+... .-..+.+.|.+.+++ .|++++.++.++++..
T Consensus 65 --------~~~v~--~~~~~~~-~~~~~~~~~~~~~y~v---------~R~~fd~~La~~A~~-aGae~~~~~~~~~~~~ 123 (396)
T COG0644 65 --------ERKVT--GARIYFP-GEKVAIEVPVGEGYIV---------DRAKFDKWLAERAEE-AGAELYPGTRVTGVIR 123 (396)
T ss_pred --------heeee--eeEEEec-CCceEEecCCCceEEE---------EhHHhhHHHHHHHHH-cCCEEEeceEEEEEEE
Confidence 00000 0000000 00000000 001111 123566778888887 5999999999999998
Q ss_pred cCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 238 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 238 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
++++ .+.++.. +. .+++||.||.|+|..+.
T Consensus 124 ~~~~---~~~~~~~-----~~-~e~~a~~vI~AdG~~s~ 153 (396)
T COG0644 124 EDDG---VVVGVRA-----GD-DEVRAKVVIDADGVNSA 153 (396)
T ss_pred eCCc---EEEEEEc-----CC-EEEEcCEEEECCCcchH
Confidence 8555 4433322 22 58999999999996664
No 107
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.42 E-value=9.4e-13 Score=143.63 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=32.1
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGG 126 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~gg 126 (641)
+|||+|||+|++|..||..+ .| +|+||||... |+++.+.|.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--~g~~V~lie~~~~--GGtC~n~GC 43 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--ADKRIAIVEKGTF--GGTCLNVGC 43 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--CCCeEEEEeCCCC--CCeeeccCc
Confidence 58999999999999987554 69 9999999764 445555553
No 108
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.41 E-value=3.4e-11 Score=128.52 Aligned_cols=60 Identities=15% Similarity=0.069 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
..+...|.+.+++ .|++++.++.|+++..+ ++ ++.++.. .+|+...+.|+.||+|||++.
T Consensus 259 ~rL~~aL~~~l~~-~Gv~I~~g~~V~~v~~~-~~---~V~~v~~---~~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 259 LRLQNALRRAFER-LGGRIMPGDEVLGAEFE-GG---RVTAVWT---RNHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHHHHHHh-CCCEEEeCCEEEEEEEe-CC---EEEEEEe---eCCceEEEECCEEEEeCCCcc
Confidence 3455677777876 59999999999999876 44 4655442 345566899999999999864
No 109
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.39 E-value=3.8e-12 Score=141.82 Aligned_cols=188 Identities=15% Similarity=0.118 Sum_probs=109.6
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccC--CCCC--HHHHH------HHH----H
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDS--VESHM------QDT----I 145 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~--~~d~--~~~~~------~d~----~ 145 (641)
.++||+|||||+.|+++|+.|+++| +|+||||..+..|+|..++|-+..... ..+. ....+ .+. +
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~~~ 84 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCV 84 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchHhh
Confidence 4699999999999999999999999 999999998887888777664432111 0111 10000 000 0
Q ss_pred HhccC--CCCHHHHHHHHHHhHHHHHHHHHcCCccccCCCCCc-ccccCCCccccceeeccC--CcHHHHHHHHHHHHHc
Q 006532 146 VAGAY--LCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNL-HLAREGGHSHHRIVHAAD--MTGREIERALLEAVVS 220 (641)
Q Consensus 146 ~~g~~--~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~-~~~~~gg~~~~r~~~~~~--~~g~~~~~~l~~~~~~ 220 (641)
....+ +..+.. . .......++.+...|++...-..... ...+.-.......++..+ .....++..+...+.+
T Consensus 85 ~~~g~l~~~~~~~--~-~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~dg~vdp~rl~~al~~~A~~ 161 (546)
T PRK11101 85 EPTDGLFITLPED--D-LAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKE 161 (546)
T ss_pred cccCCceEEeccc--c-HHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecCcEECHHHHHHHHHHHHHh
Confidence 00000 000000 0 00011123344455655321100000 000000000011111111 2356777888888877
Q ss_pred CCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 221 DPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 221 ~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
.|++++++++|++|..+ ++ ++.|+.+.+..+++...|+|+.||+|||.++.
T Consensus 162 -~Ga~i~~~t~V~~i~~~-~~---~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 162 -HGAQILTYHEVTGLIRE-GD---TVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred -CCCEEEeccEEEEEEEc-CC---eEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence 49999999999999876 44 78899988877777678999999999998874
No 110
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.38 E-value=3.3e-12 Score=131.91 Aligned_cols=49 Identities=18% Similarity=0.081 Sum_probs=39.1
Q ss_pred ccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHh
Q 006532 429 MCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDH 485 (641)
Q Consensus 429 ~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~ 485 (641)
..|.|.||++++|++||+||+|||+ +. .......|+..|+.||.+++++
T Consensus 251 ~~g~i~v~~~~~t~~~~vya~GD~~--~~------~~~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 251 EGGYIVTDEGMRTSVPGVFAAGDVR--DK------GYRQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred CCCcEEECCCCccCCCCEEEeeccc--Cc------chhhhhhhhhhHHHHHHHHHhh
Confidence 3578999999999999999999997 32 1134567888899999988765
No 111
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.37 E-value=2.3e-13 Score=141.33 Aligned_cols=188 Identities=18% Similarity=0.214 Sum_probs=110.4
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcccc----ccCceeeccC----CCCCHHHHHHHHH----
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNY----AQGGVSAVLC----PSDSVESHMQDTI---- 145 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~----a~ggi~~~~~----~~d~~~~~~~d~~---- 145 (641)
...++||||||||..|..||+.++.+| +|.|||++++.+|.|+. .+||+.+... .+......+.+.+
T Consensus 64 ~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~lD~~qyrlV~eaL~ER~ 143 (680)
T KOG0042|consen 64 STHEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNLDYEQYRLVKEALNERA 143 (680)
T ss_pred cCCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 345799999999999999999999999 99999999999988876 4677754321 1111111111111
Q ss_pred ---HhccCCCCHHHHHHHHHHhHHHHHHHHH----cCCccccCCCCCcc------cccC------C---Ccc-ccceee-
Q 006532 146 ---VAGAYLCDDETVRVVCTEGPDRIRELIA----IGASFDRGEDGNLH------LARE------G---GHS-HHRIVH- 201 (641)
Q Consensus 146 ---~~g~~~~~~~~~~~~~~~~~~~i~~l~~----~Gv~~~~~~~g~~~------~~~~------g---g~~-~~r~~~- 201 (641)
+...+++.+-.+.. ....|+.- .|+++-.--.|.-. +... . -.. .--+++
T Consensus 144 ~lle~APhLs~~lPIml------Pvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~~~L~Ga~VYy 217 (680)
T KOG0042|consen 144 NLLEIAPHLSQPLPIML------PVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPMLRKDNLKGAMVYY 217 (680)
T ss_pred HHhhcCccccCCcceee------ehhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCccccccCceeEEEEe
Confidence 11122221111000 11122210 13322111111100 0000 0 000 000111
Q ss_pred ccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 202 AADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 202 ~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
.+...-..+.-.+.=.+.. .|.++.++.+|.+|++++++ ++.|+.+.|..+|+.+.|+||.||.|||.|+-
T Consensus 218 DGQ~nDaRmnl~vAlTA~r-~GA~v~Nh~ev~~Llkd~~~---kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsD 288 (680)
T KOG0042|consen 218 DGQHNDARMNLAVALTAAR-NGATVLNHVEVVSLLKDKDG---KVIGARARDHITGKEYEIRAKVVVNATGPFSD 288 (680)
T ss_pred cCCCchHHHHHHHHHHHHh-cchhhhhHHHHHHHhhCCCC---ceeeeEEEEeecCcEEEEEEEEEEeCCCCccH
Confidence 1222223343444444444 49999999999999999777 89999999999999999999999999999884
No 112
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.4e-13 Score=135.35 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 206 ~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
.|..+...|.+.+++ ..|++++-..+++|...... -+..-....+|. .+++|.||||||+.-+
T Consensus 264 eGpkl~~ale~Hv~~-Y~vDimn~qra~~l~~a~~~-----~~l~ev~l~nGa--vLkaktvIlstGArWR 326 (520)
T COG3634 264 EGPKLAAALEAHVKQ-YDVDVMNLQRASKLEPAAVE-----GGLIEVELANGA--VLKARTVILATGARWR 326 (520)
T ss_pred cchHHHHHHHHHHhh-cCchhhhhhhhhcceecCCC-----CccEEEEecCCc--eeccceEEEecCcchh
Confidence 366778888888887 48999999889998863211 123333345665 6899999999997654
No 113
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.35 E-value=3.8e-12 Score=136.48 Aligned_cols=185 Identities=19% Similarity=0.187 Sum_probs=109.6
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccc----cCceeeccCCCCC-HHHHHH---HHHHhccCC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYA----QGGVSAVLCPSDS-VESHMQ---DTIVAGAYL 151 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a----~ggi~~~~~~~d~-~~~~~~---d~~~~g~~~ 151 (641)
.++||+|||||+.|+.+|+.|+.+| +|+|+|++.+.+|.|+.+ +||..+....+.+ ..+-+. -+.+....+
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~ 90 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHL 90 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCccc
Confidence 6799999999999999999999999 999999999999988775 4566655443222 111111 011222222
Q ss_pred CCHHHH----------HHHHHHhHHHHHHHHHcCCc----cccCCC---CC---ccccc---CCCccccceeeccCCcHH
Q 006532 152 CDDETV----------RVVCTEGPDRIRELIAIGAS----FDRGED---GN---LHLAR---EGGHSHHRIVHAADMTGR 208 (641)
Q Consensus 152 ~~~~~~----------~~~~~~~~~~i~~l~~~Gv~----~~~~~~---g~---~~~~~---~gg~~~~r~~~~~~~~g~ 208 (641)
+.+... ..+........+++- |+. -.+.-+ +. ..+.. .|+..++. ......
T Consensus 91 v~p~~~~lp~~~~~~~~~~~~~gl~lyd~la--g~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D----~~vdda 164 (532)
T COG0578 91 VEPLPFLLPHLPGLRDAWLIRAGLFLYDHLA--GIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPD----GVVDDA 164 (532)
T ss_pred cccCcCeEeccCCcccchHHHHHHHHHHHhh--cccccCCcceecchhhhhhcCcccchhhccceEEEcc----ceechH
Confidence 211110 000000001111111 110 000000 00 00000 01111110 111234
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 209 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
.++-.+...+.+ .|.++++++.|+.++.+ ++ +.||.+.|..+|+.+.|+|+.||.|||.|..-
T Consensus 165 RLv~~~a~~A~~-~Ga~il~~~~v~~~~re-~~----v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~ 227 (532)
T COG0578 165 RLVAANARDAAE-HGAEILTYTRVESLRRE-GG----VWGVEVEDRETGETYEIRARAVVNAAGPWVDE 227 (532)
T ss_pred HHHHHHHHHHHh-cccchhhcceeeeeeec-CC----EEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence 566666667776 49999999999999986 43 88999999999999999999999999999853
No 114
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.35 E-value=4.4e-12 Score=137.92 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=29.0
Q ss_pred cEEEECccHHHHHHHHHHHhcC---CeEEEEecCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG---TVAVITKAEP 115 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G---~V~llek~~~ 115 (641)
.|||||||+||+.||..|++.+ +|+|+|+...
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~ 37 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 6999999999999999998873 8999999864
No 115
>PRK10015 oxidoreductase; Provisional
Probab=99.33 E-value=2.5e-11 Score=131.40 Aligned_cols=160 Identities=20% Similarity=0.255 Sum_probs=84.6
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~ 159 (641)
.+|||+|||||+||++||+.|++.| +|+||||...++... .. ||..... ..+..+.+ +.....+..
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~-~~-gg~i~~~----~~~~l~~~-------~~~~~~i~~ 70 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKN-MT-GGRLYAH----TLEAIIPG-------FAASAPVER 70 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCccc-cc-Cceeecc----cHHHHccc-------ccccCCccc
Confidence 4699999999999999999999999 999999988754322 22 3321110 11111000 000000000
Q ss_pred HHHHhHHHHHHHHHcCCccccCCCCCcccccCCCc-cc-cceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006532 160 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGH-SH-HRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~-~~-~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
......+.+.. .++.......... .. +...+ ......+.+.|.+.+++ .|++++.++.|+++..
T Consensus 71 ----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~v~R~~fd~~L~~~a~~-~Gv~i~~~~~V~~i~~ 136 (429)
T PRK10015 71 ----------KVTREKISFLT-EESAVTLDFHREQPDVPQHASY--TVLRNRLDPWLMEQAEQ-AGAQFIPGVRVDALVR 136 (429)
T ss_pred ----------cccceeEEEEe-CCCceEeecccCCCCCCCcCce--EeehhHHHHHHHHHHHH-cCCEEECCcEEEEEEE
Confidence 00000000100 0000000000000 00 00000 01123455678888877 5999999999999987
Q ss_pred cCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 238 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 238 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
+ ++ ++.++.. ++ ..++|+.||+|+|..+.+
T Consensus 137 ~-~~---~v~~v~~----~~--~~i~A~~VI~AdG~~s~v 166 (429)
T PRK10015 137 E-GN---KVTGVQA----GD--DILEANVVILADGVNSML 166 (429)
T ss_pred e-CC---EEEEEEe----CC--eEEECCEEEEccCcchhh
Confidence 5 44 5666542 22 269999999999986643
No 116
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.31 E-value=4.9e-11 Score=130.70 Aligned_cols=185 Identities=13% Similarity=0.073 Sum_probs=99.1
Q ss_pred CccccccEEEECccHHHHHHHHHHHhc--C-CeEEEEecCCCCCccccccCceeeccCCCCCHHHH--------------
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESH-------------- 140 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~--G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~-------------- 140 (641)
..+.++||+|||||++|+++|++|+++ | +|+|||++....|+|..+.|.+.............
T Consensus 20 ~~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaSgrn~G~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 99 (460)
T TIGR03329 20 VGDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGGCMLTWSTKFFTLKRLFGEAEAARLVKASE 99 (460)
T ss_pred CCCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccccccccccCccccccccCHHHHHHhhCHHHHHHHHHHHH
Confidence 345679999999999999999999998 8 99999999887888888776442211100000000
Q ss_pred -----HHHHHHhccCCCCHHH--------HHHHHHHhHHHHHHHHHcCCc-cccCCCCCcccccCCCccccceee-cc--
Q 006532 141 -----MQDTIVAGAYLCDDET--------VRVVCTEGPDRIRELIAIGAS-FDRGEDGNLHLAREGGHSHHRIVH-AA-- 203 (641)
Q Consensus 141 -----~~d~~~~g~~~~~~~~--------~~~~~~~~~~~i~~l~~~Gv~-~~~~~~g~~~~~~~gg~~~~r~~~-~~-- 203 (641)
+.+.......-|+... -..-.+......+.+.++|++ +..-....+. ...+...+...++ +.
T Consensus 100 ~~~~~~~~l~~~~~i~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~G~~~~~~l~~~e~~-~~~~~~~~~~g~~~~~~g 178 (460)
T TIGR03329 100 QAVLEIAAFCEQHNIDAQLRLDGTLYTATNPAQVGSMDPVVDALERRGINSWQRLSEGELA-RRTGSARHLEGFYSPVAA 178 (460)
T ss_pred HHHHHHHHHHHHhCCCCCcccCCEEEEecCHHHHHHHHHHHHHHHHhCCCCeEEcCHHHHH-HHhCCCcceEEEEeCCCe
Confidence 0111110000010000 000011111223334445543 1110000000 0000000111111 11
Q ss_pred CCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 204 DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 204 ~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
...+..++..|.+.+++ .|++|++++.|+++... + ...|. +.+| .|+|+.||+|||++..
T Consensus 179 ~i~P~~l~~~L~~~a~~-~Gv~i~~~t~V~~i~~~--~----~~~v~---t~~g---~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 179 SVQPGLLVRGLRRVALE-LGVEIHENTPMTGLEEG--Q----PAVVR---TPDG---QVTADKVVLALNAWMA 238 (460)
T ss_pred EECHHHHHHHHHHHHHH-cCCEEECCCeEEEEeeC--C----ceEEE---eCCc---EEECCEEEEccccccc
Confidence 12466788999988887 59999999999998642 2 22232 2445 4899999999999864
No 117
>PRK10262 thioredoxin reductase; Provisional
Probab=99.31 E-value=6.4e-12 Score=131.18 Aligned_cols=36 Identities=31% Similarity=0.358 Sum_probs=32.3
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
+..+||+|||||+|||+||+.|++.| +|+++|+...
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~ 40 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK 40 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecC
Confidence 45689999999999999999999999 9999997643
No 118
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.27 E-value=5.9e-11 Score=133.88 Aligned_cols=68 Identities=16% Similarity=0.114 Sum_probs=57.0
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC-CCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTL-DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 206 ~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~-~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
....+...|.+.+.+ .|+++++++.|++|..++ ++ ++.||.+.+..+++.+.|+|+.||+|+|+++..
T Consensus 230 dp~rl~~al~~~A~~-~Ga~i~~~~~V~~l~~~~~~g---~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~ 298 (627)
T PLN02464 230 NDSRLNVALACTAAL-AGAAVLNYAEVVSLIKDESTG---RIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDE 298 (627)
T ss_pred cHHHHHHHHHHHHHh-CCcEEEeccEEEEEEEecCCC---cEEEEEEEECCCCcEEEEEeCEEEECCCHhHHH
Confidence 466788889999888 499999999999998764 34 688998887777777789999999999999753
No 119
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.26 E-value=1.5e-10 Score=127.96 Aligned_cols=180 Identities=13% Similarity=0.133 Sum_probs=99.7
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcccccc----CceeeccCCCCCHHHHHHHH-------HHhc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQ----GGVSAVLCPSDSVESHMQDT-------IVAG 148 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~----ggi~~~~~~~d~~~~~~~d~-------~~~g 148 (641)
..+||||||||+.|+++|+.|+++| +|+||||..+.+|+|..+. ||+.+... . .. ....+. ....
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~-~-~~-~l~~e~l~er~~l~~~~ 81 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEH-Y-EF-RLVREALAEREVLLRMA 81 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccccchHHHhhh-c-cH-HHHHHHHHHHHHHHHhC
Confidence 4599999999999999999999999 9999999998888776654 44433211 0 00 111111 1111
Q ss_pred cCCCCHH---------HHHHHHHHhHHHHHHHHHcC----C------ccccCCCCCcccccCCCccccceeeccC--CcH
Q 006532 149 AYLCDDE---------TVRVVCTEGPDRIRELIAIG----A------SFDRGEDGNLHLAREGGHSHHRIVHAAD--MTG 207 (641)
Q Consensus 149 ~~~~~~~---------~~~~~~~~~~~~i~~l~~~G----v------~~~~~~~g~~~~~~~gg~~~~r~~~~~~--~~g 207 (641)
..++.+- ....+.... .+..+..++ + .+...... ..+. . .........+ ...
T Consensus 82 p~~~~~l~~~~~~~~~~~~~~~~~~--gl~lyd~~~~~~~l~~~~~~~~~~~~~~-~~L~--~--~l~g~~~~~dg~vd~ 154 (508)
T PRK12266 82 PHIIWPMRFVLPHRPHLRPAWMIRA--GLFLYDHLGKRKSLPGSRGLDLGRDPAG-SPLK--P--EITRGFEYSDCWVDD 154 (508)
T ss_pred CCcccccceEEEecccccchHHHHH--HHHHHHhhcCCCCCChhhhhchhhcccC-CCcc--h--hhcEEEEEcCcccCH
Confidence 1111110 000000000 000111111 0 00000000 0000 0 0001111111 234
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
..++..+...+.+ .|++++++++|+++..+ ++ ..++.+.+..+|+...|+|+.||+|||.++.
T Consensus 155 ~rl~~~l~~~A~~-~Ga~i~~~~~V~~i~~~-~~----~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 155 ARLVVLNARDAAE-RGAEILTRTRVVSARRE-NG----LWHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHHHHHHHHHHH-cCCEEEcCcEEEEEEEe-CC----EEEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 6677777777777 49999999999999875 33 3467776655677778999999999998874
No 120
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.25 E-value=1.1e-10 Score=123.25 Aligned_cols=178 Identities=19% Similarity=0.230 Sum_probs=99.7
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCC--HHH-------HHHHHHHhcc----
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDS--VES-------HMQDTIVAGA---- 149 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~--~~~-------~~~d~~~~g~---- 149 (641)
||+|||||++|+++|+.|++.| +|+|||++.+.++.|..+.|.+........+ ... .+.+......
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIPVG 80 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSSCE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhhcCcccc
Confidence 8999999999999999999999 9999999977777776664444333111111 111 1111111110
Q ss_pred -------CCC-CHHHHHHHHHHhHHHHHHHHHcCCccccCCCCCcc-cccCCCccccceeeccC---CcHHHHHHHHHHH
Q 006532 150 -------YLC-DDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLH-LAREGGHSHHRIVHAAD---MTGREIERALLEA 217 (641)
Q Consensus 150 -------~~~-~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~-~~~~gg~~~~r~~~~~~---~~g~~~~~~l~~~ 217 (641)
.+. ++.... ......+.+.+.++++.......+. ..+.........++... .....+...|.+.
T Consensus 81 ~~~~g~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~ 156 (358)
T PF01266_consen 81 FRPCGSLYLAEDEEDAE----SLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAE 156 (358)
T ss_dssp EEECEEEEEESSHHHHH----HHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHH
T ss_pred cccccccccccchhhhh----hccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHH
Confidence 001 222211 1123334455556643211000000 00000000011111111 2367899999999
Q ss_pred HHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 218 VVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 218 ~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
+++. |++|+++++|++|..+ ++ ++.||.+ .+| .|+|+.||+|+|.++.
T Consensus 157 ~~~~-Gv~i~~~~~V~~i~~~-~~---~v~gv~~---~~g---~i~ad~vV~a~G~~s~ 204 (358)
T PF01266_consen 157 AQRA-GVEIRTGTEVTSIDVD-GG---RVTGVRT---SDG---EIRADRVVLAAGAWSP 204 (358)
T ss_dssp HHHT-T-EEEESEEEEEEEEE-TT---EEEEEEE---TTE---EEEECEEEE--GGGHH
T ss_pred HHHh-hhhccccccccchhhc-cc---ccccccc---ccc---ccccceeEecccccce
Confidence 9884 9999999999999987 44 6777765 445 4999999999998764
No 121
>PRK12831 putative oxidoreductase; Provisional
Probab=99.23 E-value=3.9e-11 Score=131.04 Aligned_cols=49 Identities=20% Similarity=0.328 Sum_probs=41.3
Q ss_pred cCceEeCCC-CCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhh
Q 006532 430 CGGVRAGLQ-GETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487 (641)
Q Consensus 430 ~GGI~vD~~-~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 487 (641)
.|.|.||++ ++|++||+||+||++ +|. ..+..|+-.|+.||.++.+|+.
T Consensus 412 ~G~i~vd~~~~~Ts~pgVfAaGD~~-~g~--------~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 412 RGCIVADEETGLTSKEGVFAGGDAV-TGA--------ATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred CCcEEECCCCCccCCCCEEEeCCCC-CCc--------hHHHHHHHHHHHHHHHHHHHhc
Confidence 477999998 999999999999997 332 2467899999999999988874
No 122
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.20 E-value=6.7e-11 Score=129.34 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=29.6
Q ss_pred cEEEECccHHHHHHHHHHHhcC---CeEEEEecCCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPH 116 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G---~V~llek~~~~ 116 (641)
+|||||||+||++||..|++.+ +|+|+|+.+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 5999999999999999999875 79999998753
No 123
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.16 E-value=5.7e-10 Score=123.46 Aligned_cols=186 Identities=12% Similarity=0.059 Sum_probs=99.7
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCcee----eccCCC-CCHHHHH---HHHHHhccC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVS----AVLCPS-DSVESHM---QDTIVAGAY 150 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~----~~~~~~-d~~~~~~---~d~~~~g~~ 150 (641)
..++||+|||||++|+++|+.|+++| +|+||||..+.+|+|..+.+-+. +..... ....+-+ ...+.....
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ap~ 83 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAPH 83 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhCCc
Confidence 34599999999999999999999999 99999999988887776554332 111000 0000000 011111211
Q ss_pred CCCHHH---------HHHHHHHhHHHHHHHHHcCCc--cccCCCCCcccc----cCCC-ccccceeec--cCCcHHHHHH
Q 006532 151 LCDDET---------VRVVCTEGPDRIRELIAIGAS--FDRGEDGNLHLA----REGG-HSHHRIVHA--ADMTGREIER 212 (641)
Q Consensus 151 ~~~~~~---------~~~~~~~~~~~i~~l~~~Gv~--~~~~~~g~~~~~----~~gg-~~~~r~~~~--~~~~g~~~~~ 212 (641)
+..+-. ...+.. ...+..+..++.. +.. ...+... ...- ......... .......+..
T Consensus 84 l~~~~~~~~~~~~~~~~~~~~--~~g~~ly~~~~~~~~~~~--~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~~ 159 (502)
T PRK13369 84 IIWPMRFVLPHSPEDRPAWLV--RLGLFLYDHLGGRKRLPG--TRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVV 159 (502)
T ss_pred cccccceEEecccccccHHHH--HHHHHHHHhccCCCCCCc--ceEechhhccccCCchHhcCEEEEEcCeeecHHHHHH
Confidence 111100 000000 0001111111210 000 0000000 0000 000011111 1123566777
Q ss_pred HHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 213 ALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 213 ~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
.+...+.+ .|+++++++.|+++..+ ++ ..++.+.+.. |+...|+|+.||+|||.++.
T Consensus 160 ~l~~~a~~-~Ga~i~~~~~V~~i~~~-~~----~~~v~~~~~~-g~~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 160 LNALDAAE-RGATILTRTRCVSARRE-GG----LWRVETRDAD-GETRTVRARALVNAAGPWVT 216 (502)
T ss_pred HHHHHHHH-CCCEEecCcEEEEEEEc-CC----EEEEEEEeCC-CCEEEEEecEEEECCCccHH
Confidence 78888877 59999999999999875 33 4466666544 77778999999999998874
No 124
>PLN02697 lycopene epsilon cyclase
Probab=99.16 E-value=4e-09 Score=115.86 Aligned_cols=143 Identities=26% Similarity=0.275 Sum_probs=79.5
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~ 158 (641)
...+||+|||||+||+++|+.+++.| +|+|||+......+ .|+. ...+.+. ++ .+.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n-----~GvW---------~~~l~~l-----gl--~~~-- 162 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGVW---------EDEFKDL-----GL--EDC-- 162 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCc-----cccc---------hhHHHhc-----Cc--HHH--
Confidence 44699999999999999999999999 99999986432211 1221 0001000 00 000
Q ss_pred HHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006532 159 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 238 (641)
Q Consensus 159 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 238 (641)
.. ..+...-+.+. ++.... -+..+. ......+...|.+.+.+ .|+++ .++.|+++..+
T Consensus 163 --i~------~~w~~~~v~~~---~~~~~~---~~~~Yg------~V~R~~L~~~Ll~~a~~-~GV~~-~~~~V~~I~~~ 220 (529)
T PLN02697 163 --IE------HVWRDTIVYLD---DDKPIM---IGRAYG------RVSRTLLHEELLRRCVE-SGVSY-LSSKVDRITEA 220 (529)
T ss_pred --HH------hhcCCcEEEec---CCceee---ccCccc------EEcHHHHHHHHHHHHHh-cCCEE-EeeEEEEEEEc
Confidence 00 00000001110 111000 000000 12345677888888877 59998 56689998765
Q ss_pred CCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 239 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 239 ~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
+++ +..+.. .+|. .|.|+.||.|+|..+.
T Consensus 221 ~~~----~~vv~~---~dG~--~i~A~lVI~AdG~~S~ 249 (529)
T PLN02697 221 SDG----LRLVAC---EDGR--VIPCRLATVASGAASG 249 (529)
T ss_pred CCc----EEEEEE---cCCc--EEECCEEEECCCcChh
Confidence 333 322222 2343 6899999999998874
No 125
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=99.16 E-value=3.2e-09 Score=109.62 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
-..++..+.+.+.+ .|++|+++++|.+|+.+ ++ .+.++.. .+|+ .|.|+.||||.|-.++
T Consensus 172 l~~vvkni~~~l~~-~G~ei~f~t~VeDi~~~-~~---~~~~v~~---~~g~--~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 172 LPKVVKNIREYLES-LGGEIRFNTEVEDIEIE-DN---EVLGVKL---TKGE--EIEADYVVLAPGRSGR 231 (486)
T ss_pred hHHHHHHHHHHHHh-cCcEEEeeeEEEEEEec-CC---ceEEEEc---cCCc--EEecCEEEEccCcchH
Confidence 35677888899988 59999999999999987 43 3556654 3554 6999999999996665
No 126
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.15 E-value=8.5e-10 Score=118.59 Aligned_cols=54 Identities=24% Similarity=0.213 Sum_probs=37.5
Q ss_pred cCceEeCCCCCcccCCeeecccccCCCC-CCCCccchhhhHHHHHHHHHHHHHHHH
Q 006532 430 CGGVRAGLQGETNVRGLYVAGEVACTGL-HGANRLASNSLLEALVFARRAVQPSID 484 (641)
Q Consensus 430 ~GGI~vD~~~~T~ipGLyAaGe~a~~g~-~Ga~rl~g~sl~~a~v~G~~Ag~~aa~ 484 (641)
.|||.||+++||++|++||+|||+.... .|.. .--.....|.-.|++||++++.
T Consensus 254 ~~gi~vd~~~~ts~~~IyA~GD~a~~~~~~g~~-~~~~~~~~A~~qg~~aa~ni~g 308 (396)
T PRK09754 254 ANGIVIDEACRTCDPAIFAGGDVAITRLDNGAL-HRCESWENANNQAQIAAAAMLG 308 (396)
T ss_pred CCCEEECCCCccCCCCEEEccceEeeeCCCCCE-EEECcHHHHHHHHHHHHHHhcC
Confidence 3789999999999999999999972111 1111 0011235678889999888764
No 127
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.15 E-value=1.9e-10 Score=125.39 Aligned_cols=47 Identities=17% Similarity=0.364 Sum_probs=39.3
Q ss_pred cCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHh
Q 006532 430 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDH 485 (641)
Q Consensus 430 ~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~ 485 (641)
.|+|.||+.++|++||+||+||++ +|. .....|+-.|+.||.++.+|
T Consensus 402 ~G~i~vd~~~~Ts~~~VfA~GD~~-~g~--------~~v~~Ai~~G~~AA~~I~~~ 448 (449)
T TIGR01316 402 RGTIVVDEDQRTSIPGVFAGGDII-LGA--------ATVIRAMGQGKRAAKSINEY 448 (449)
T ss_pred CCeEEeCCCCccCCCCEEEecCCC-CCc--------HHHHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999997 332 24668899999999988765
No 128
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.14 E-value=6.2e-10 Score=116.00 Aligned_cols=150 Identities=27% Similarity=0.337 Sum_probs=84.9
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEE-ecCCCCCcccc-ccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHH
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVIT-KAEPHESNTNY-AQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 160 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~lle-k~~~~~g~s~~-a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~ 160 (641)
||+|||||.||+.||+.||+.| +|+|+. +....+.-++. +-||+ .. ..+++.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~---------~k---------------g~L~~Ei 56 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGI---------AK---------------GHLVREI 56 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEEST---------TH---------------HHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccc---------cc---------------cchhHHH
Confidence 8999999999999999999999 999993 32222211111 11222 11 1111122
Q ss_pred HHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCC
Q 006532 161 CTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD 240 (641)
Q Consensus 161 ~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~ 240 (641)
-.....+.......++.|......+ . ..++. +|.. .| -..+...+.+.+++.++++|+. .+|++|+.+ +
T Consensus 57 dalgg~m~~~aD~~~i~~~~lN~sk---G-pav~a-~r~q--vD--r~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~e-~ 125 (392)
T PF01134_consen 57 DALGGLMGRAADETGIHFRMLNRSK---G-PAVHA-LRAQ--VD--RDKYSRAMREKLESHPNLTIIQ-GEVTDLIVE-N 125 (392)
T ss_dssp HHTT-SHHHHHHHHEEEEEEESTTS-----GGCTE-EEEE--E---HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEEC-T
T ss_pred hhhhhHHHHHHhHhhhhhhcccccC---C-CCccc-hHhh--cc--HHHHHHHHHHHHhcCCCeEEEE-cccceEEec-C
Confidence 1112223333444455443211000 0 01111 1111 11 3356667777888778999985 589999987 5
Q ss_pred CCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 241 GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 241 g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
+ +|.||+. .+|+ .|.|+.||+|||.|.+
T Consensus 126 ~---~v~GV~~---~~g~--~~~a~~vVlaTGtfl~ 153 (392)
T PF01134_consen 126 G---KVKGVVT---KDGE--EIEADAVVLATGTFLN 153 (392)
T ss_dssp T---EEEEEEE---TTSE--EEEECEEEE-TTTGBT
T ss_pred C---eEEEEEe---CCCC--EEecCEEEEecccccC
Confidence 5 8999876 4565 6999999999998664
No 129
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.13 E-value=6.8e-10 Score=114.55 Aligned_cols=62 Identities=19% Similarity=0.346 Sum_probs=46.7
Q ss_pred HHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCC-eEEEEEcCEEEEcCCCCC
Q 006532 212 RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQ-EVVRFISKVTLLASGGAG 275 (641)
Q Consensus 212 ~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g-~~~~i~Ak~VVlAtGg~~ 275 (641)
..++..+.++.|++|+.++.|++|+.+.++ .+++||.+.+..+. ....+.+|.||||+|++.
T Consensus 196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~--~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~ 258 (296)
T PF00732_consen 196 TTYLPPALKRPNLTLLTNARVTRIIFDGDG--GRATGVEYVDNDGGVQRRIVAAKEVILAAGAIG 258 (296)
T ss_dssp HHHHHHHTTTTTEEEEESEEEEEEEEETTS--TEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHH
T ss_pred hcccchhhccCCccEEcCcEEEEEeeeccc--cceeeeeeeecCCcceeeeccceeEEeccCCCC
Confidence 344445555569999999999999875333 38999999986555 356778899999999876
No 130
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.12 E-value=5.6e-10 Score=128.80 Aligned_cols=48 Identities=27% Similarity=0.452 Sum_probs=39.1
Q ss_pred cCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhh
Q 006532 430 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 486 (641)
Q Consensus 430 ~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~ 486 (641)
.|.|.||+.++|++||+||+||++ .|. ..+..|+..|+.||.+++...
T Consensus 794 ~G~I~VDetlqTs~pgVFAaGD~a-~Gp--------~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 794 KGWPVVDANGETSLTNVYMIGDVQ-RGP--------STIVAAIADARRAADAILSRE 841 (1019)
T ss_pred CCCEEeCCCcccCCCCEEEEeccc-cCc--------hHHHHHHHHHHHHHHHHhhhc
Confidence 467999999999999999999997 332 246788889999999887643
No 131
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.12 E-value=4.6e-10 Score=122.92 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=41.1
Q ss_pred cCceEeCC-CCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhc
Q 006532 430 CGGVRAGL-QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 488 (641)
Q Consensus 430 ~GGI~vD~-~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~ 488 (641)
.|+|.||. .++|++||+||+||++ +|. .....|+..|+.||.++..++.+
T Consensus 403 ~g~i~vd~~~~~Ts~~~VfA~GD~~-~~~--------~~~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 403 WGTIIADDETGRTSLPGVFAGGDIV-TGA--------ATVVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred CCCEEeCCCCCccCCCCEEEeCCcC-CCc--------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899998 7899999999999997 331 24567889999999999888753
No 132
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.11 E-value=7.4e-09 Score=111.08 Aligned_cols=31 Identities=32% Similarity=0.591 Sum_probs=30.2
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEec
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~ 113 (641)
|||+||||||||++||+.|++.| +|+|+||.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 79999999999999999999999 99999997
No 133
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.11 E-value=2.7e-09 Score=115.45 Aligned_cols=45 Identities=24% Similarity=0.428 Sum_probs=38.3
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC-CCCCccccccCce
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE-PHESNTNYAQGGV 127 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~-~~~g~s~~a~ggi 127 (641)
+||+|||||+.|+++|++|++.| +|+||||+. ...+.|..+.|.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~as~~~~g~~ 48 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETSFANGGQL 48 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCcccccCCEE
Confidence 59999999999999999999999 999999997 4556666655544
No 134
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.11 E-value=8.8e-10 Score=119.11 Aligned_cols=185 Identities=15% Similarity=0.116 Sum_probs=102.6
Q ss_pred CccccccEEEECccHHHHHHHHHHHhc-C--CeEEEEecCCCCCccccccCceeeccCC-CCCH-----HHHHHHHHHh-
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKH-G--TVAVITKAEPHESNTNYAQGGVSAVLCP-SDSV-----ESHMQDTIVA- 147 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~-G--~V~llek~~~~~g~s~~a~ggi~~~~~~-~d~~-----~~~~~d~~~~- 147 (641)
.....+||+|||||++|+++|+.|++. | +|+|+||..+..|.|..+.|.+...... .... ...+.++...
T Consensus 26 ~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~~g~~~~~~~~~~~~~~~~~s~~l~~~l~~~~ 105 (407)
T TIGR01373 26 EPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPESAELYEHAMKLWEGLSQDL 105 (407)
T ss_pred CCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccccceeeecccCccccHHHHHHHHHHHHHHHHh
Confidence 334579999999999999999999985 8 7999999988777777776655432221 1110 0111221111
Q ss_pred ccC--C---------CCHHHHHHHHHHhHHHHHHHHHcCCccccCCCCCcc-----cccCCCc--cccceeec---cCCc
Q 006532 148 GAY--L---------CDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLH-----LAREGGH--SHHRIVHA---ADMT 206 (641)
Q Consensus 148 g~~--~---------~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~-----~~~~gg~--~~~r~~~~---~~~~ 206 (641)
+.. + .+++.. +......+.+.+.|++........+. +...++. .....++. ....
T Consensus 106 ~~~~~~~~~G~l~~a~~~~~~----~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~~~~~~~~ga~~~~~~g~v~ 181 (407)
T TIGR01373 106 NYNVMFSQRGVLNLCHSTADM----DDGARRVNAMRLNGVDAELLSPEQVRRVIPILDFSPDARFPVVGGLLQRRGGTAR 181 (407)
T ss_pred CCCcCEEeccEEEEeCCHHHH----HHHHHHHHHHHHcCCCeEEeCHHHHHHhCCCCccccccccceeEEEEcCCCCcCC
Confidence 100 0 011111 11122233344556654321100000 0000000 00111111 1112
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
...+...|.+.+.+ .|++++++++|+++..++++ .+.++.. .+| .+.|+.||+|+|++..
T Consensus 182 p~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~---~~~~v~t---~~g---~i~a~~vVvaagg~~~ 241 (407)
T TIGR01373 182 HDAVAWGYARGADR-RGVDIIQNCEVTGFIRRDGG---RVIGVET---TRG---FIGAKKVGVAVAGHSS 241 (407)
T ss_pred HHHHHHHHHHHHHH-CCCEEEeCCEEEEEEEcCCC---cEEEEEe---CCc---eEECCEEEECCChhhH
Confidence 34566778888877 59999999999999764344 4555543 345 5899999999999874
No 135
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.11 E-value=5.8e-11 Score=128.60 Aligned_cols=146 Identities=21% Similarity=0.245 Sum_probs=35.2
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHHHH
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCT 162 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~~ 162 (641)
||||||||+||++||+.|++.| +|+||||....||.... +++....... ...... .-+.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~--~~~~~~~~~~-~~~~~~----------------~gi~- 60 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS--GGVSPFDGNH-DEDQVI----------------GGIF- 60 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG--SSS-EETTEE-HHHHHH----------------HHHH-
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE--CCcCChhhcc-hhhccC----------------CCHH-
Confidence 8999999999999999999999 99999999988775432 3332222110 000000 0000
Q ss_pred HhHHHHHHHHHcCCc-cccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006532 163 EGPDRIRELIAIGAS-FDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 163 ~~~~~i~~l~~~Gv~-~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
.+.++.+...+-. .. ...+... . .......+...|.+.+.+ .|++++.++.|++++.+ ++
T Consensus 61 --~e~~~~~~~~~~~~~~-~~~~~~~----------~----~~~~~~~~~~~l~~~l~e-~gv~v~~~t~v~~v~~~-~~ 121 (428)
T PF12831_consen 61 --REFLNRLRARGGYPQE-DRYGWVS----------N----VPFDPEVFKAVLDEMLAE-AGVEVLLGTRVVDVIRD-GG 121 (428)
T ss_dssp --HHHHHST-----------------------------------------------------------------------
T ss_pred --HHHHHHHhhhcccccc-ccccccc----------c----cccccccccccccccccc-ccccccccccccccccc-cc
Confidence 0111111111100 00 0000000 0 000111223344444544 69999999999999987 55
Q ss_pred CCceEEEEEEEecCCCeEEEEEcCEEEEcCCC
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISKVTLLASGG 273 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg 273 (641)
+|.||.+.+.. | ..+|+|+.||.|||-
T Consensus 122 ---~i~~V~~~~~~-g-~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 122 ---RITGVIVETKS-G-RKEIRAKVFIDATGD 148 (428)
T ss_dssp --------------------------------
T ss_pred ---ccccccccccc-c-ccccccccccccccc
Confidence 79999987643 5 678999999999994
No 136
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.11 E-value=8.3e-10 Score=119.66 Aligned_cols=158 Identities=22% Similarity=0.304 Sum_probs=84.9
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~ 159 (641)
..|||+|||||+||++||+.|+++| +|+||||...++... . .||.... ...+..+.+..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~-~-~gg~l~~----~~~e~l~~~~~-------------- 63 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKN-V-TGGRLYA----HSLEHIIPGFA-------------- 63 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcc-c-ccceech----hhHHHHhhhhh--------------
Confidence 3599999999999999999999999 999999988664322 1 2333211 01111111100
Q ss_pred HHHHhHHHHHHH-HHcCCccccCCCCCcccccCCCc--cccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006532 160 VCTEGPDRIREL-IAIGASFDRGEDGNLHLAREGGH--SHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 236 (641)
Q Consensus 160 ~~~~~~~~i~~l-~~~Gv~~~~~~~g~~~~~~~gg~--~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~ 236 (641)
...+ ++.. ....+.|. ..++.......... ...... .......+...|.+.+++ .|++++.++.|+++.
T Consensus 64 --~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~v~R~~fD~~L~~~a~~-~Gv~i~~~~~V~~i~ 135 (428)
T PRK10157 64 --DSAP--VERLITHEKLAFM-TEKSAMTMDYCNGDETSPSQRS--YSVLRSKFDAWLMEQAEE-AGAQLITGIRVDNLV 135 (428)
T ss_pred --hcCc--ccceeeeeeEEEE-cCCCceeeccccccccCCCCCc--eeeEHHHHHHHHHHHHHH-CCCEEECCCEEEEEE
Confidence 0000 0000 00000110 01111100000000 000000 001134566778888877 599999999999998
Q ss_pred ecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 237 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 237 ~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
.+ ++ .+.++. .+|+ .+.|+.||+|+|..+.
T Consensus 136 ~~-~g---~v~~v~----~~g~--~i~A~~VI~A~G~~s~ 165 (428)
T PRK10157 136 QR-DG---KVVGVE----ADGD--VIEAKTVILADGVNSI 165 (428)
T ss_pred Ee-CC---EEEEEE----cCCc--EEECCEEEEEeCCCHH
Confidence 76 44 555543 1343 5899999999997553
No 137
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.10 E-value=7.1e-09 Score=111.39 Aligned_cols=44 Identities=14% Similarity=0.250 Sum_probs=36.2
Q ss_pred CcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhh
Q 006532 440 ETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487 (641)
Q Consensus 440 ~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 487 (641)
++.-+|+..+||++ |. .+.+.|.++..|+.+|++||+.+++.+.
T Consensus 266 ~~~~~~~llvGDAA--g~--v~P~tGeGI~~A~~sg~~aa~~i~~~~~ 309 (398)
T TIGR02028 266 RRVVGRVALVGDAA--GY--VTKCSGEGIYFAAKSGRMCAEAIVEESR 309 (398)
T ss_pred cEECCCEEEEEcCC--CC--CCcccccchHHHHHHHHHHHHHHHHHHh
Confidence 34458999999997 33 3678899999999999999999987653
No 138
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.10 E-value=1.8e-09 Score=113.89 Aligned_cols=184 Identities=20% Similarity=0.166 Sum_probs=100.5
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC---CeEEEEecCCCC-CccccccCceeeccCCCCCHHHHHHHHHHhccC------
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHE-SNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAY------ 150 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G---~V~llek~~~~~-g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~------ 150 (641)
..+||+|||||+.|+++|+.|++.+ +|+||||....+ .+|..++|-+.+... .++...-.+....|..
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~--y~p~slka~l~~~g~~~~~~~~ 79 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLY--YTPGSLKAKLCVAGNINEFAIC 79 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceecccc--CCCcchhhHHHHHHHHHHHHHH
Confidence 3689999999999999999999986 899999987654 344444443332221 1111111111111110
Q ss_pred -------CCCHHHH----HHHHHHhHHHHHHHHHcCCc-cccCCCCCcccccC-----CCccccceeeccCCcHHHHHHH
Q 006532 151 -------LCDDETV----RVVCTEGPDRIRELIAIGAS-FDRGEDGNLHLARE-----GGHSHHRIVHAADMTGREIERA 213 (641)
Q Consensus 151 -------~~~~~~~----~~~~~~~~~~i~~l~~~Gv~-~~~~~~g~~~~~~~-----gg~~~~r~~~~~~~~g~~~~~~ 213 (641)
...+.++ +.-.+......+.+...|++ +... +..-....+ +....-..-.........+...
T Consensus 80 kq~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~l-d~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~ 158 (429)
T COG0579 80 KQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEIL-DKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRA 158 (429)
T ss_pred HHhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeec-CHHHHHhhCccccccceeeEEcCCCceEcHHHHHHH
Confidence 0000000 00011111222233344554 1110 000000000 0000000000122345678899
Q ss_pred HHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 214 LLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 214 l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
|.+.+.++ |+++..+++|++|...+|| +...++.+|+.. ++||.||.|.|+++-
T Consensus 159 l~e~a~~~-g~~i~ln~eV~~i~~~~dg-------~~~~~~~~g~~~-~~ak~Vin~AGl~Ad 212 (429)
T COG0579 159 LAEEAQAN-GVELRLNTEVTGIEKQSDG-------VFVLNTSNGEET-LEAKFVINAAGLYAD 212 (429)
T ss_pred HHHHHHHc-CCEEEecCeeeEEEEeCCc-------eEEEEecCCcEE-EEeeEEEECCchhHH
Confidence 99999985 9999999999999987553 445566777655 999999999998874
No 139
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.09 E-value=4.7e-09 Score=114.93 Aligned_cols=66 Identities=18% Similarity=0.192 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 206 ~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
....+...|.+.+++ .|++|+++++|+++..++++ .+ .+.+.++.+|+...|+|+.||+|+|+++.
T Consensus 176 dp~~l~~aL~~~a~~-~Gv~i~~~t~V~~i~~~~~~---~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 176 DFGALTKQLLGYLVQ-NGTTIRFGHEVRNLKRQSDG---SW-TVTVKNTRTGGKRTLNTRFVFVGAGGGAL 241 (483)
T ss_pred CHHHHHHHHHHHHHh-CCCEEEeCCEEEEEEEcCCC---eE-EEEEeeccCCceEEEECCEEEECCCcchH
Confidence 467788999999987 49999999999999875443 22 23333444565557999999999999875
No 140
>PRK06126 hypothetical protein; Provisional
Probab=99.09 E-value=3.7e-09 Score=118.62 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..+...|.+.+.+..+++|++++.|+++..+++ .|. +.+.+..+|+..+++|+.||.|+|..+.+
T Consensus 126 ~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~----~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~V 190 (545)
T PRK06126 126 KYLEPILLEHAAAQPGVTLRYGHRLTDFEQDAD----GVT-ATVEDLDGGESLTIRADYLVGCDGARSAV 190 (545)
T ss_pred HHHHHHHHHHHHhCCCceEEeccEEEEEEECCC----eEE-EEEEECCCCcEEEEEEEEEEecCCcchHH
Confidence 346677788777656899999999999987644 344 55556567877789999999999988853
No 141
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.09 E-value=3.2e-09 Score=115.15 Aligned_cols=60 Identities=15% Similarity=0.088 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 206 ~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
....++..|.+.+.+ .|++|+++++|+++..+ ++ .+.++.. .++ .++|+.||+|+|.++.
T Consensus 199 ~p~~~~~~l~~~~~~-~G~~i~~~~~V~~i~~~-~~---~~~~v~t---~~~---~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 199 DCQLFTQRLAAMAEQ-LGVKFRFNTPVDGLLVE-GG---RITGVQT---GGG---VITADAYVVALGSYST 258 (416)
T ss_pred CHHHHHHHHHHHHHH-CCCEEEcCCEEEEEEec-CC---EEEEEEe---CCc---EEeCCEEEECCCcchH
Confidence 356778888888877 59999999999999875 33 4555543 333 5899999999998864
No 142
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.08 E-value=8.2e-10 Score=121.25 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=40.8
Q ss_pred cCceEeC-CCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhc
Q 006532 430 CGGVRAG-LQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 488 (641)
Q Consensus 430 ~GGI~vD-~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~ 488 (641)
.|.|.+| +.++|++||+||+||++ +|. .....|+-.|+.||.++.+|+..
T Consensus 416 ~g~i~vd~~~~~Ts~~gVfa~GD~~-~g~--------~~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 416 RGRVAAPDNAYQTSNPKVFAAGDMR-RGQ--------SLVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred CCCEEeCCCcccCCCCCEEEccccC-CCc--------hhHHHHHHHHHHHHHHHHHHHhc
Confidence 4778998 78999999999999997 322 23567888999999999988753
No 143
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.07 E-value=6.6e-10 Score=107.54 Aligned_cols=31 Identities=48% Similarity=0.743 Sum_probs=28.9
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
||+|||||+||+.||..|++.+ +|+|+|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 7999999999999999999999 999997754
No 144
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.07 E-value=1.5e-08 Score=115.67 Aligned_cols=39 Identities=28% Similarity=0.354 Sum_probs=34.8
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 119 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~ 119 (641)
...+|+|||||+|||+||..|++.| +|+|+|+....+|.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~ 365 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGL 365 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCce
Confidence 3569999999999999999999999 99999998766554
No 145
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.06 E-value=5.8e-09 Score=111.46 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=36.1
Q ss_pred CceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHH
Q 006532 431 GGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSID 484 (641)
Q Consensus 431 GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~ 484 (641)
+||.||++++|++||+||+|||+ .+.|. .+ + .+..|...|+.||++++.
T Consensus 253 ~gi~vd~~l~ts~~~VyA~GD~a--~~~~~-~~-~-~~~~a~~~g~~~a~n~~g 301 (377)
T PRK04965 253 RGIVVDSYLQTSAPDIYALGDCA--EINGQ-VL-P-FLQPIQLSAMALAKNLLG 301 (377)
T ss_pred CCEEECCCcccCCCCEEEeeecE--eECCc-ee-e-hHHHHHHHHHHHHHHhcC
Confidence 57999999999999999999997 33332 11 1 244567788888887764
No 146
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.05 E-value=8.1e-10 Score=129.31 Aligned_cols=49 Identities=18% Similarity=0.342 Sum_probs=40.3
Q ss_pred cCceEeCC-CCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhh
Q 006532 430 CGGVRAGL-QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487 (641)
Q Consensus 430 ~GGI~vD~-~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 487 (641)
.|.|.||+ .++|++||+||+||++ .| .....+|+-.|+.||.++.+|+.
T Consensus 578 ~G~I~vd~~~~~Ts~pgVFAaGD~~-~G--------~~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 578 WGTIEVEKGSQRTSIKGVYSGGDAA-RG--------GSTAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred CCCEEECCCCCccCCCCEEEEEcCC-CC--------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 46789996 4899999999999997 32 23567899999999999988764
No 147
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.05 E-value=3.4e-09 Score=114.85 Aligned_cols=163 Identities=16% Similarity=0.167 Sum_probs=86.7
Q ss_pred CccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHH
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDET 156 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~ 156 (641)
.....+||+|||||+||+++|+.|++.| +|+|+||.+...-.. ...++. ..+. ... .++.- ++
T Consensus 14 ~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~--~g~~~~--l~~~--~~~----~L~~l-Gl----- 77 (415)
T PRK07364 14 TRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAA--KGQAYA--LSLL--SAR----IFEGI-GV----- 77 (415)
T ss_pred CCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCC--CCcEEE--echH--HHH----HHHHC-Ch-----
Confidence 3445799999999999999999999999 999999987532110 011111 1000 000 01000 00
Q ss_pred HHHHHHHhHHHHHHHHHcCCccc----cCCCCC--cccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcce
Q 006532 157 VRVVCTEGPDRIRELIAIGASFD----RGEDGN--LHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHH 230 (641)
Q Consensus 157 ~~~~~~~~~~~i~~l~~~Gv~~~----~~~~g~--~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~ 230 (641)
.+.+...+.++. .+..+. ..+..... ......+.. ....+.+.|.+.+.+..++++++++
T Consensus 78 -----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~l~~~L~~~~~~~~~v~i~~~~ 143 (415)
T PRK07364 78 -----------WEKILPQIGKFRQIRLSDADYPGVVKFQPTDL-GTEALGYVG--EHQVLLEALQEFLQSCPNITWLCPA 143 (415)
T ss_pred -----------hhhhHhhcCCccEEEEEeCCCCceeeeccccC-CCCccEEEE--ecHHHHHHHHHHHhcCCCcEEEcCC
Confidence 111112222211 011110 00000000 000000000 1134677788888765689999999
Q ss_pred EEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 231 FAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 231 ~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
.++++..++++ + .+.+. .+++..+++||.||.|+|..+.+
T Consensus 144 ~v~~v~~~~~~----~-~v~~~--~~~~~~~i~adlvIgADG~~S~v 183 (415)
T PRK07364 144 EVVSVEYQQDA----A-TVTLE--IEGKQQTLQSKLVVAADGARSPI 183 (415)
T ss_pred eeEEEEecCCe----e-EEEEc--cCCcceEEeeeEEEEeCCCCchh
Confidence 99999766332 2 23332 23444579999999999988753
No 148
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.05 E-value=8.7e-10 Score=127.83 Aligned_cols=51 Identities=22% Similarity=0.263 Sum_probs=37.0
Q ss_pred ccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHH
Q 006532 429 MCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSID 484 (641)
Q Consensus 429 ~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~ 484 (641)
..|||.||+++||++|++||+|||+ ..++ .+.| ....|.-.|+.|+.+++.
T Consensus 259 ~~G~I~VD~~l~Ts~p~IYAiGD~a--~~~~--~~~g-l~~~a~~~a~vaa~~i~g 309 (847)
T PRK14989 259 PRGGIVINDSCQTSDPDIYAIGECA--SWNN--RVFG-LVAPGYKMAQVAVDHLLG 309 (847)
T ss_pred CCCcEEECCCCcCCCCCEEEeecce--eEcC--cccc-cHHHHHHHHHHHHHHhcC
Confidence 3589999999999999999999997 3322 1111 234566677778777654
No 149
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.04 E-value=4.1e-09 Score=113.33 Aligned_cols=176 Identities=16% Similarity=0.184 Sum_probs=93.5
Q ss_pred cccEEEECccHHHHHHHHHHHhc--C-CeEEEEecC-CCCCccccccCceeeccC-CCCC-HHHH-------HHHHHHhc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAE-PHESNTNYAQGGVSAVLC-PSDS-VESH-------MQDTIVAG 148 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~--G-~V~llek~~-~~~g~s~~a~ggi~~~~~-~~d~-~~~~-------~~d~~~~g 148 (641)
.+||+|||||++|+++|+.|+++ | +|+||||.. ...++|..+.|.+..... ..++ ...+ +.+....-
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQH 81 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHc
Confidence 38999999999999999999998 9 999999986 444555555443322111 1111 0010 11111100
Q ss_pred cC-C---------CCHHHHHHHHHHhHHHHHHHHHcCCccccCCCCCcc-----cccCCCccccceeeccCCcHHHHHHH
Q 006532 149 AY-L---------CDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLH-----LAREGGHSHHRIVHAADMTGREIERA 213 (641)
Q Consensus 149 ~~-~---------~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~-----~~~~gg~~~~r~~~~~~~~g~~~~~~ 213 (641)
.. . .+++.. +......+++.+.|+++..-....+. +...++...+.. .......+...
T Consensus 82 ~~~~~~~G~l~~~~~~~~~----~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~---g~vd~~~l~~a 154 (393)
T PRK11728 82 GIPYEECGKLLVATSELEL----ERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPST---GIVDYRAVAEA 154 (393)
T ss_pred CCCcccCCEEEEEcCHHHH----HHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCc---eEECHHHHHHH
Confidence 00 0 011111 11112223334445543211000000 000011000100 11135678888
Q ss_pred HHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 214 LLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 214 l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
|.+.+++ .|+++++++.|+++..+ ++ .+ .+.. .+| .+.|+.||+|+|.++.
T Consensus 155 L~~~~~~-~Gv~i~~~~~V~~i~~~-~~---~~-~V~~---~~g---~i~ad~vV~A~G~~s~ 205 (393)
T PRK11728 155 MAELIQA-RGGEIRLGAEVTALDEH-AN---GV-VVRT---TQG---EYEARTLINCAGLMSD 205 (393)
T ss_pred HHHHHHh-CCCEEEcCCEEEEEEec-CC---eE-EEEE---CCC---EEEeCEEEECCCcchH
Confidence 9988887 59999999999998765 33 22 2322 344 5899999999998763
No 150
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.04 E-value=6.9e-09 Score=113.75 Aligned_cols=67 Identities=19% Similarity=0.212 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 206 ~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
....+...|.+.+++..|++++++++|+++..++++ .+ .+.+.++.+|+..+|+|+.||+|+|+++.
T Consensus 181 d~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg---~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 181 NFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDG---SW-TVTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCC---CE-EEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 356788899998887534899999999999875454 33 23443334564446899999999999874
No 151
>PLN02463 lycopene beta cyclase
Probab=99.04 E-value=3.4e-08 Score=106.85 Aligned_cols=36 Identities=33% Similarity=0.562 Sum_probs=32.8
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
....+||+|||||+||+++|+.|++.| +|+|+|+.+
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 345699999999999999999999999 999999865
No 152
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.04 E-value=1.1e-09 Score=126.89 Aligned_cols=38 Identities=34% Similarity=0.460 Sum_probs=34.1
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 118 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g 118 (641)
...||+|||||+||++||+.|++.| +|+|+|+....+|
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG 574 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGG 574 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCc
Confidence 3579999999999999999999999 9999999876543
No 153
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.03 E-value=3e-08 Score=107.81 Aligned_cols=37 Identities=35% Similarity=0.444 Sum_probs=33.5
Q ss_pred CccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.....+||+||||||||++||+.|+++| +|+|+||..
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3445699999999999999999999999 999999975
No 154
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.03 E-value=8.1e-10 Score=130.47 Aligned_cols=51 Identities=24% Similarity=0.356 Sum_probs=41.8
Q ss_pred cCceEeCC-----CCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcc
Q 006532 430 CGGVRAGL-----QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKST 489 (641)
Q Consensus 430 ~GGI~vD~-----~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~ 489 (641)
.|.|.+|. .++|++||+||+||++ +|. ..+..|+..|++||.++.+|+...
T Consensus 702 ~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~-~G~--------~~vv~Ai~~Gr~AA~~I~~~L~~~ 757 (1006)
T PRK12775 702 WGNIAADDGKLESTQSTNLPGVFAGGDIV-TGG--------ATVILAMGAGRRAARSIATYLRLG 757 (1006)
T ss_pred CCcEEeCCCccccCcCCCCCCEEEecCcC-CCc--------cHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46688886 6899999999999997 332 246789999999999999998654
No 155
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.03 E-value=3.2e-09 Score=112.96 Aligned_cols=46 Identities=28% Similarity=0.532 Sum_probs=40.7
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCcee
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVS 128 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~ 128 (641)
+||+|||||++|+++|+.|++.| +|+|||+.....|+|..+.|.+.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~~gaS~~~~G~~~ 47 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQGASVRNFGQVW 47 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCceEE
Confidence 69999999999999999999999 99999999887777777766554
No 156
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.03 E-value=2.5e-09 Score=114.42 Aligned_cols=181 Identities=16% Similarity=0.153 Sum_probs=92.2
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCC-CccccccCceeeccCCCCCHHH-------HHHHHHHh-ccCCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHE-SNTNYAQGGVSAVLCPSDSVES-------HMQDTIVA-GAYLC 152 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~-g~s~~a~ggi~~~~~~~d~~~~-------~~~d~~~~-g~~~~ 152 (641)
|||+|||||++|+++|+.|+++| +|+||||..... +.+....+++.......+.... ++.++... +....
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~ 80 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLEKEAGTKLH 80 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHHHHhCCeeE
Confidence 69999999999999999999999 999999987542 2232222233221111111111 11111111 10000
Q ss_pred CHHHHHHHH----HHhHHHHHHHHHcCCccccCCCCCcccccCCCcc---ccceee-cc--CCcHHHHHHHHHHHHHcCC
Q 006532 153 DDETVRVVC----TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS---HHRIVH-AA--DMTGREIERALLEAVVSDP 222 (641)
Q Consensus 153 ~~~~~~~~~----~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~---~~r~~~-~~--~~~g~~~~~~l~~~~~~~~ 222 (641)
.+.-...+. +......+.+.+.|++...-....+. ..+.... ....++ .. -.....+...|.+.+++ .
T Consensus 81 ~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~-~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~~-~ 158 (380)
T TIGR01377 81 RQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLK-QRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAEA-H 158 (380)
T ss_pred eecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHH-HhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHHH-c
Confidence 000000000 11122334455566553211100000 0000000 000111 11 11345677888888877 5
Q ss_pred CcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 223 NISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 223 gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
|++++.+++|+++..+ ++ .+ .+.. .++ .|.|+.||+|+|++..
T Consensus 159 g~~~~~~~~V~~i~~~-~~---~~-~v~~---~~~---~i~a~~vV~aaG~~~~ 201 (380)
T TIGR01377 159 GATVRDGTKVVEIEPT-EL---LV-TVKT---TKG---SYQANKLVVTAGAWTS 201 (380)
T ss_pred CCEEECCCeEEEEEec-CC---eE-EEEe---CCC---EEEeCEEEEecCcchH
Confidence 9999999999999875 33 23 2322 334 5899999999998764
No 157
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.03 E-value=8.5e-10 Score=110.72 Aligned_cols=165 Identities=25% Similarity=0.333 Sum_probs=101.7
Q ss_pred CCccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHH
Q 006532 77 DGSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDE 155 (641)
Q Consensus 77 ~~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~ 155 (641)
...+..+||+|||+|.+|.+-|+.|++.| +|.||||+-.. |+..+.+.+..|.++.
T Consensus 40 ~~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~E--------------------PdRivGEllQPGG~~~--- 96 (509)
T KOG1298|consen 40 ARNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSE--------------------PDRIVGELLQPGGYLA--- 96 (509)
T ss_pred hccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEeccccc--------------------chHHHHHhcCcchhHH---
Confidence 34566799999999999999999999999 99999997531 2333333333332221
Q ss_pred HHHHHHHHhHHHHHHHHHcCCccccCCCCC-----cccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcce
Q 006532 156 TVRVVCTEGPDRIRELIAIGASFDRGEDGN-----LHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHH 230 (641)
Q Consensus 156 ~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~-----~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~ 230 (641)
+.+.-.++..+.++...-.|..+.. +|+ |....+......|.+|. | .++..|.+.+...+||++.++
T Consensus 97 L~~LGl~Dcve~IDAQ~v~Gy~ifk--~gk~v~~pyP~~~f~~d~~GrsFhn----G-RFvq~lR~ka~slpNV~~eeG- 168 (509)
T KOG1298|consen 97 LSKLGLEDCVEGIDAQRVTGYAIFK--DGKEVDLPYPLKNFPSDPSGRSFHN----G-RFVQRLRKKAASLPNVRLEEG- 168 (509)
T ss_pred HHHhCHHHHhhcccceEeeeeEEEe--CCceeeccCCCcCCCCCcccceeec----c-HHHHHHHHHHhcCCCeEEeee-
Confidence 0000111111112211122332221 111 11111111112233322 2 477788888888899999988
Q ss_pred EEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 231 FAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 231 ~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
.|.+|+.+ +| .|.||...+.. |+..+..|.-.|+|.|.|+++
T Consensus 169 tV~sLlee-~g---vvkGV~yk~k~-gee~~~~ApLTvVCDGcfSnl 210 (509)
T KOG1298|consen 169 TVKSLLEE-EG---VVKGVTYKNKE-GEEVEAFAPLTVVCDGCFSNL 210 (509)
T ss_pred eHHHHHhc-cC---eEEeEEEecCC-CceEEEecceEEEecchhHHH
Confidence 58899876 66 89999998755 555789999999999999865
No 158
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.02 E-value=1.6e-09 Score=125.68 Aligned_cols=49 Identities=16% Similarity=0.319 Sum_probs=41.3
Q ss_pred cCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhh
Q 006532 430 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487 (641)
Q Consensus 430 ~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 487 (641)
.|.|.||++++|++||+||+||++ +| ...+..|+-.|++||.++.+|+.
T Consensus 702 ~G~i~vd~~~~Ts~~gVfA~GD~~-~g--------~~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 702 KGTIVVDEEMQSSIPGIYAGGDIV-RG--------GATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CCCEEeCCCCCCCCCCEEEeCCcc-CC--------cHHHHHHHHHHHHHHHHHHHHhc
Confidence 477999999999999999999997 33 13467899999999999988864
No 159
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.99 E-value=1.5e-08 Score=116.11 Aligned_cols=49 Identities=31% Similarity=0.537 Sum_probs=40.9
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecC-CCCCccccccCceeec
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE-PHESNTNYAQGGVSAV 130 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~-~~~g~s~~a~ggi~~~ 130 (641)
.+||+|||||++|+++|+.|+++| +|+||||.. +..|+|..+.|.+...
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~gaSg~~~G~l~~~ 310 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQGALYPL 310 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccccCCcCcccccccc
Confidence 479999999999999999999999 999999985 5567776666555433
No 160
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.99 E-value=3.3e-09 Score=112.14 Aligned_cols=48 Identities=25% Similarity=0.298 Sum_probs=39.4
Q ss_pred cCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhh
Q 006532 430 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 486 (641)
Q Consensus 430 ~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~ 486 (641)
.|.|.||++.+|++||+||+|||+ ++. ..+..|+..|+.|+.++.+++
T Consensus 302 ~g~i~vd~~~~t~~~~vyaiGD~~-~~~--------~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 302 KGEIVVDEKHMTSREGVFAAGDVV-TGP--------SKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred CCcEeeCCCcccCCCCEEEEcccc-cCc--------chHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999997 332 135678888999999988776
No 161
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.99 E-value=2.5e-09 Score=121.72 Aligned_cols=51 Identities=22% Similarity=0.306 Sum_probs=41.6
Q ss_pred cCceEeCC-CCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcc
Q 006532 430 CGGVRAGL-QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKST 489 (641)
Q Consensus 430 ~GGI~vD~-~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~ 489 (641)
.|.|.||+ .++|++||+||+||++ +|. .....|+-.|++||.++.+|+...
T Consensus 452 ~G~I~vd~~~~~Ts~pgVfA~GDv~-~g~--------~~v~~Ai~~G~~AA~~I~~~L~g~ 503 (652)
T PRK12814 452 NGTVKVDPETLQTSVAGVFAGGDCV-TGA--------DIAINAVEQGKRAAHAIDLFLNGK 503 (652)
T ss_pred CCcEeeCCCCCcCCCCCEEEcCCcC-CCc--------hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46799997 5889999999999997 332 245778899999999999998654
No 162
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.98 E-value=3.5e-08 Score=107.49 Aligned_cols=79 Identities=9% Similarity=0.128 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEE-EEcCEEEEcCCCCCcC--CCCCCC
Q 006532 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVR-FISKVTLLASGGAGHI--YPSTTN 283 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~-i~Ak~VVlAtGg~~~~--~~~~~~ 283 (641)
-..++..|.+.++++ ||+|+.++.|++|+.+.++...+|+|+.+.....++.+. ..+|.||+|+||+... +..++.
T Consensus 225 yeSLV~PL~~~Le~~-GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ns~~G~~~~ 303 (576)
T PRK13977 225 YESLVLPLIKYLEDH-GVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITESSTYGDMDT 303 (576)
T ss_pred hhHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccccccCCCCC
Confidence 467889999999985 999999999999998522212489999886422233333 4569999999999863 444444
Q ss_pred ccc
Q 006532 284 PLV 286 (641)
Q Consensus 284 ~~~ 286 (641)
|+.
T Consensus 304 p~~ 306 (576)
T PRK13977 304 PAP 306 (576)
T ss_pred CCC
Confidence 443
No 163
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.98 E-value=5.3e-09 Score=107.52 Aligned_cols=148 Identities=18% Similarity=0.193 Sum_probs=81.5
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHHH
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~ 161 (641)
|||+|||||+||+++|+.|++.| +|+|+||....+. .....++.. ...+. +. ... .
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~--~~~~~~~~~-----~~~~~-----l~---~~~-~------- 57 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY--KPCGGALSP-----RVLEE-----LD---LPL-E------- 57 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc--ccccCccCH-----hHHHH-----hc---CCc-h-------
Confidence 69999999999999999999999 9999999876432 111112210 00000 00 000 0
Q ss_pred HHhHHHHHHHHHcCCccccCCCCCc-ccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCC
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNL-HLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD 240 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~-~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~ 240 (641)
...... ....+. ..++.. ..... .... .......+...|.+.+.+ .|++++.++.++++..+++
T Consensus 58 ----~~~~~~--~~~~~~-~~~~~~~~~~~~----~~~~---~~i~r~~l~~~l~~~~~~-~gv~~~~~~~v~~~~~~~~ 122 (295)
T TIGR02032 58 ----LIVNLV--RGARFF-SPNGDSVEIPIE----TELA---YVIDRDAFDEQLAERAQE-AGAELRLGTTVLDVEIHDD 122 (295)
T ss_pred ----hhhhhe--eeEEEE-cCCCcEEEeccC----CCcE---EEEEHHHHHHHHHHHHHH-cCCEEEeCcEEeeEEEeCC
Confidence 000000 001110 011110 00000 0000 001234577788888877 5999999999999987633
Q ss_pred CCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 241 GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 241 g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
.+ .+.+ .++ ..+++|+.||+|+|..+.+
T Consensus 123 ----~~-~~~~---~~~-~~~~~a~~vv~a~G~~s~~ 150 (295)
T TIGR02032 123 ----RV-VVIV---RGG-EGTVTAKIVIGADGSRSIV 150 (295)
T ss_pred ----EE-EEEE---cCc-cEEEEeCEEEECCCcchHH
Confidence 22 1222 122 2368999999999987643
No 164
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=6.7e-09 Score=96.86 Aligned_cols=119 Identities=15% Similarity=0.165 Sum_probs=78.0
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~ 158 (641)
.+...|+|||+|||+..||+.|++.. +-+|+|-.... + .+.||.......
T Consensus 6 ~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~-~---i~pGGQLtTTT~------------------------- 56 (322)
T KOG0404|consen 6 THNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMAN-G---IAPGGQLTTTTD------------------------- 56 (322)
T ss_pred eeeeeEEEEccCchHHHHHHHHhhcccCceEEeeeecc-C---cCCCceeeeeec-------------------------
Confidence 44568999999999999999999999 99999964321 1 111221100000
Q ss_pred HHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006532 159 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 238 (641)
Q Consensus 159 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 238 (641)
.+ .|.. ++.+.+|..++..+.++..+ .|.+|+.. .|.++..+
T Consensus 57 ------------ve----NfPG--------------------FPdgi~G~~l~d~mrkqs~r-~Gt~i~tE-tVskv~~s 98 (322)
T KOG0404|consen 57 ------------VE----NFPG--------------------FPDGITGPELMDKMRKQSER-FGTEIITE-TVSKVDLS 98 (322)
T ss_pred ------------cc----cCCC--------------------CCcccccHHHHHHHHHHHHh-hcceeeee-ehhhcccc
Confidence 00 0110 12345688899999999887 59999987 47777654
Q ss_pred CCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 239 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 239 ~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
. ++.-++. +.+ .++|++||+|||+.++
T Consensus 99 s-----kpF~l~t---d~~---~v~~~avI~atGAsAk 125 (322)
T KOG0404|consen 99 S-----KPFKLWT---DAR---PVTADAVILATGASAK 125 (322)
T ss_pred C-----CCeEEEe---cCC---ceeeeeEEEeccccee
Confidence 2 3433332 222 6899999999998875
No 165
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.97 E-value=5.7e-09 Score=111.49 Aligned_cols=180 Identities=11% Similarity=0.044 Sum_probs=91.7
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCC--CccccccCceeeccCCCCCH-------HHHHHHHHHh-c-
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHE--SNTNYAQGGVSAVLCPSDSV-------ESHMQDTIVA-G- 148 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~--g~s~~a~ggi~~~~~~~d~~-------~~~~~d~~~~-g- 148 (641)
.++||+|||||++|+++|+.|++.| +|+||||+.... +++..+.+.+.......... ...+.+..+. +
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~ 81 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELERESGE 81 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCCCCcCcCCcceEEEeeccCCchhhHHHHHHHHHHHHHHHHhCC
Confidence 3589999999999999999999999 999999987643 22211111111111111100 0111121111 1
Q ss_pred -------cCCCCHHHHHHHHHHhHHHHHHHHHcCCccccCCCCCccc-cc-CCCccccceee-cc--CCcHHHHHHHHHH
Q 006532 149 -------AYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHL-AR-EGGHSHHRIVH-AA--DMTGREIERALLE 216 (641)
Q Consensus 149 -------~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~-~~-~gg~~~~r~~~-~~--~~~g~~~~~~l~~ 216 (641)
......+. .+......+.+.++|++...-....+.. .+ .........++ .. -.....++..+.+
T Consensus 82 ~~~~~~G~l~~~~~~----~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~~~~ 157 (376)
T PRK11259 82 PLFVRTGVLNLGPAD----SDFLANSIRSARQHGLPHEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPELAIKAHLR 157 (376)
T ss_pred ccEEEECCEEEcCCC----CHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHHHHHHHHH
Confidence 00000000 0011123344555665432110000000 00 00000000111 11 1134567777777
Q ss_pred HHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 217 AVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 217 ~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
.+.+ .|+++++++.|+++..+ ++ .+ .+. +.+| .++|+.||+|+|++..
T Consensus 158 ~~~~-~gv~i~~~~~v~~i~~~-~~---~~-~v~---~~~g---~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 158 LARE-AGAELLFNEPVTAIEAD-GD---GV-TVT---TADG---TYEAKKLVVSAGAWVK 205 (376)
T ss_pred HHHH-CCCEEECCCEEEEEEee-CC---eE-EEE---eCCC---EEEeeEEEEecCcchh
Confidence 7776 59999999999999875 33 22 232 2345 5899999999998864
No 166
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.96 E-value=2.1e-08 Score=109.17 Aligned_cols=67 Identities=24% Similarity=0.275 Sum_probs=47.8
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 206 ~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
....+...|.+.+.+..|+++++++.|++|..++++ .+. +.+.++.+++...++|+.||+|+|+++.
T Consensus 182 D~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~---~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 182 NFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDG---GWE-VTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCC---CEE-EEEEecCCCceEEEEcCEEEECCCcchH
Confidence 456788889888865459999999999999865343 232 2322334453336899999999999885
No 167
>PRK06185 hypothetical protein; Provisional
Probab=98.96 E-value=1.1e-08 Score=110.72 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
..+...|.+.+.+..|++++.++.++++..+ ++ .+.|+.+.. .+|+ ..++|+.||.|+|+.+.
T Consensus 108 ~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~---~v~~v~~~~-~~g~-~~i~a~~vI~AdG~~S~ 170 (407)
T PRK06185 108 WDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GG---RVTGVRART-PDGP-GEIRADLVVGADGRHSR 170 (407)
T ss_pred HHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CC---EEEEEEEEc-CCCc-EEEEeCEEEECCCCchH
Confidence 4567788887776569999999999999876 44 577776643 3343 47999999999999885
No 168
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.95 E-value=2.5e-09 Score=108.16 Aligned_cols=163 Identities=26% Similarity=0.326 Sum_probs=99.9
Q ss_pred cccccEEEECccHHHHHHHHHHHhc----C---CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKH----G---TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLC 152 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~----G---~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~ 152 (641)
..++||+|||||+|||+||++|.+. + +|+||||+...+|.+.. |.+ .. .....+.+.++-..+..++
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS--Gav---ie-p~aldEL~P~wke~~apl~ 147 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS--GAV---IE-PGALDELLPDWKEDGAPLN 147 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec--cee---ec-cchhhhhCcchhhcCCccc
Confidence 3579999999999999999999763 3 79999999988876632 211 11 1122233333332222222
Q ss_pred CHHHHHHHHHHhHHHHHHHHH-cCCcc----ccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEE
Q 006532 153 DDETVRVVCTEGPDRIRELIA-IGASF----DRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVF 227 (641)
Q Consensus 153 ~~~~~~~~~~~~~~~i~~l~~-~Gv~~----~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~ 227 (641)
.+-. .+.+.+|.. +-+++ ..+..|.|. + .=..+++.|-+++++ .||+|+
T Consensus 148 t~vT--------~d~~~fLt~~~~i~vPv~~pm~NhGNYv------------v-----~L~~~v~wLg~kAEe-~GvEiy 201 (621)
T KOG2415|consen 148 TPVT--------SDKFKFLTGKGRISVPVPSPMDNHGNYV------------V-----SLGQLVRWLGEKAEE-LGVEIY 201 (621)
T ss_pred cccc--------ccceeeeccCceeecCCCcccccCCcEE------------E-----EHHHHHHHHHHHHHh-hCceec
Confidence 1111 011111110 00110 001111111 0 113578889999988 699999
Q ss_pred cceEEEEEEecCCCCCceEEEEEEEecC---CCe-------EEEEEcCEEEEcCCCCCcC
Q 006532 228 EHHFAIDLLTTLDGPDAVCHGVDTLNVE---TQE-------VVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 228 ~~~~v~~l~~~~~g~~~~v~Gv~~~~~~---~g~-------~~~i~Ak~VVlAtGg~~~~ 277 (641)
.+..+.+++.++|| .|.|+...|.. +|. -..|.|+..|+|-|..+.+
T Consensus 202 Pg~aaSevly~edg---sVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~L 258 (621)
T KOG2415|consen 202 PGFAASEVLYDEDG---SVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSL 258 (621)
T ss_pred cccchhheeEcCCC---cEeeEeeccccccCCCCccccccccceecceeEEEeccccchh
Confidence 99999999999888 89999876531 221 2579999999999998875
No 169
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.95 E-value=3.1e-09 Score=112.22 Aligned_cols=63 Identities=17% Similarity=0.143 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
..+.+.|.+.+++. |+++..++.++++..+.++ +.. .+.+..+|+..+|+|+.||.|.|..+.
T Consensus 111 ~~l~~~L~~~~~~~-gv~i~~~~~v~~~~~d~~~----~~~-~~~~~~~g~~~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 111 PELDRALREEAEER-GVDIRFGTRVVSIEQDDDG----VTV-VVRDGEDGEEETIEADLVVGADGAHSK 173 (356)
T ss_dssp HHHHHHHHHHHHHH-TEEEEESEEEEEEEEETTE----EEE-EEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred HHHHHhhhhhhhhh-hhhheeeeecccccccccc----ccc-ccccccCCceeEEEEeeeecccCcccc
Confidence 46778888888874 8999999999999887543 443 344556788889999999999998875
No 170
>PLN02985 squalene monooxygenase
Probab=98.94 E-value=6.5e-09 Score=114.76 Aligned_cols=64 Identities=22% Similarity=0.288 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..+...|.+.+.+..||+++++ .+++++.+ ++ .+.||.+.+ .+|+..++.|+.||.|+|.++.+
T Consensus 147 ~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~-~~---~v~gV~~~~-~dG~~~~~~AdLVVgADG~~S~v 210 (514)
T PLN02985 147 GRFVQRLRQKASSLPNVRLEEG-TVKSLIEE-KG---VIKGVTYKN-SAGEETTALAPLTVVCDGCYSNL 210 (514)
T ss_pred HHHHHHHHHHHHhCCCeEEEee-eEEEEEEc-CC---EEEEEEEEc-CCCCEEEEECCEEEECCCCchHH
Confidence 4577888888877668999876 58888765 44 678888754 35766778999999999998864
No 171
>PRK13984 putative oxidoreductase; Provisional
Probab=98.93 E-value=3.5e-09 Score=120.07 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=40.9
Q ss_pred cCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhh
Q 006532 430 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487 (641)
Q Consensus 430 ~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 487 (641)
.|.|.||++++|++||+||+||++ .+ .++..|+-.|+.||.++.+|+.
T Consensus 555 ~G~i~vd~~~~Ts~~gVfAaGD~~-~~---------~~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 555 RGRILTNEYGQTSIPWLFAGGDIV-HG---------PDIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CCeEEeCCCCccCCCCEEEecCcC-Cc---------hHHHHHHHHHHHHHHHHHHHhc
Confidence 577999999999999999999997 22 2467789999999999988863
No 172
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.93 E-value=1.5e-08 Score=108.63 Aligned_cols=182 Identities=20% Similarity=0.190 Sum_probs=100.6
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCC-C---------HHHHHHHHHHhcc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSD-S---------VESHMQDTIVAGA 149 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d-~---------~~~~~~d~~~~g~ 149 (641)
..+||+|||||++|+++|+.|++.| +|+|+|+.....|+|..+.+++........ + ...++.+....-.
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRPLADLSLALWRELSEELG 82 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCcchhcchhhhccccccCCccchhhhhhHHHHHHHHHHHHHhC
Confidence 4689999999999999999999999 999999999888888888887765544311 0 0111111111100
Q ss_pred ---CCCCHHHHHHHHH-------HhHHHHHHHHHcCCcc---ccCC----CCCcccc-cCCCccccceeeccCCcHHHHH
Q 006532 150 ---YLCDDETVRVVCT-------EGPDRIRELIAIGASF---DRGE----DGNLHLA-REGGHSHHRIVHAADMTGREIE 211 (641)
Q Consensus 150 ---~~~~~~~~~~~~~-------~~~~~i~~l~~~Gv~~---~~~~----~g~~~~~-~~gg~~~~r~~~~~~~~g~~~~ 211 (641)
.+.....+..... ......+.++...... .... ...+... ..++...+. ........++
T Consensus 83 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~a~~~~~---~~~~~p~~~~ 159 (387)
T COG0665 83 TGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGEDAELLDAAEAAELEPALGPDFVCGGLFDPT---GGHLDPRLLT 159 (387)
T ss_pred cchhcchhhhhhhhhccccchHHHHHHHHHHHHhcCCCceeCCHHHHHHhCCCCCcccceeeEecCC---CCcCCHHHHH
Confidence 0111111111111 1122222333333221 0000 0000000 001100000 1122356788
Q ss_pred HHHHHHHHcCCC-cEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 212 RALLEAVVSDPN-ISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 212 ~~l~~~~~~~~g-v~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..|.+.+.+. | ..+..++.++.+..+. + +.+|.. .+|+ |.|+.||+|||+++..
T Consensus 160 ~~l~~~~~~~-G~~~~~~~~~~~~~~~~~-~----~~~v~t---~~g~---i~a~~vv~a~G~~~~~ 214 (387)
T COG0665 160 RALAAAAEEL-GVVIIEGGTPVTSLERDG-R----VVGVET---DGGT---IEADKVVLAAGAWAGE 214 (387)
T ss_pred HHHHHHHHhc-CCeEEEccceEEEEEecC-c----EEEEEe---CCcc---EEeCEEEEcCchHHHH
Confidence 8999999884 6 6777788898887541 2 334433 3453 9999999999988753
No 173
>PRK09126 hypothetical protein; Provisional
Probab=98.90 E-value=2.8e-08 Score=106.81 Aligned_cols=35 Identities=34% Similarity=0.529 Sum_probs=32.8
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 116 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~ 116 (641)
++||+|||||++|+++|+.|++.| +|+|+||....
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 38 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLA 38 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 589999999999999999999999 99999998753
No 174
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.90 E-value=6.8e-09 Score=120.49 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=36.3
Q ss_pred CceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHH
Q 006532 431 GGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSID 484 (641)
Q Consensus 431 GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~ 484 (641)
|||.||+++||+.|++||+|||+ ...+ .+.| ....+.-.|+.+|.+++.
T Consensus 252 ggI~Vd~~~~Ts~p~IyA~GD~a--~~~~--~~~g-l~~~a~~qa~vaA~ni~g 300 (785)
T TIGR02374 252 RGIIVNDSMQTSDPDIYAVGECA--EHNG--RVYG-LVAPLYEQAKVLADHICG 300 (785)
T ss_pred CCEEECCCcccCCCCEEEeeecc--eeCC--cccc-cHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999997 2322 1222 244566778888877754
No 175
>PRK06834 hypothetical protein; Provisional
Probab=98.89 E-value=3.1e-08 Score=109.01 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..+.+.|.+.+++ .|++++.++.++++..++++ + .+.. .+|+ +++|+.||.|+|+.+.+
T Consensus 100 ~~le~~L~~~l~~-~gv~i~~~~~v~~v~~~~~~----v---~v~~-~~g~--~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 100 NHIERILAEWVGE-LGVPIYRGREVTGFAQDDTG----V---DVEL-SDGR--TLRAQYLVGCDGGRSLV 158 (488)
T ss_pred HHHHHHHHHHHHh-CCCEEEcCCEEEEEEEcCCe----E---EEEE-CCCC--EEEeCEEEEecCCCCCc
Confidence 4566777788877 49999999999999886443 2 2222 3453 68999999999998843
No 176
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.89 E-value=1.5e-08 Score=111.41 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=39.5
Q ss_pred cCceE-eCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhc
Q 006532 430 CGGVR-AGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 488 (641)
Q Consensus 430 ~GGI~-vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~ 488 (641)
.|.|. +|+.++|++||+||+||++ +|. .....|+-.|++||.++.+|+..
T Consensus 430 ~G~i~~~~~~~~Ts~~gVfAaGD~~-~g~--------~~~~~Av~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 430 RGNISAGYDDYSTSIPGVFAAGDCR-RGQ--------SLIVWAINEGRKAAAAVDRYLMG 480 (485)
T ss_pred CCCEEecCCCceECCCCEEEeeccC-CCc--------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46674 4678999999999999997 332 24567899999999999998754
No 177
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.89 E-value=1.1e-07 Score=100.63 Aligned_cols=61 Identities=15% Similarity=0.093 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCC-C
Q 006532 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA-G 275 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~-~ 275 (641)
|..+.+.|.+.+++ .|++++.++.|+++..+ ++ ++.++... ++....+.|+.||||||+| +
T Consensus 262 G~RL~~aL~~~~~~-~Gg~il~g~~V~~i~~~-~~---~v~~V~t~---~g~~~~l~AD~vVLAaGaw~S 323 (419)
T TIGR03378 262 GIRLEEALKHRFEQ-LGGVMLPGDRVLRAEFE-GN---RVTRIHTR---NHRDIPLRADHFVLASGSFFS 323 (419)
T ss_pred HHHHHHHHHHHHHH-CCCEEEECcEEEEEEee-CC---eEEEEEec---CCccceEECCEEEEccCCCcC
Confidence 67788889999987 59999999999999876 44 57776542 3323479999999999998 5
No 178
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.89 E-value=3.6e-08 Score=110.37 Aligned_cols=159 Identities=18% Similarity=0.192 Sum_probs=88.6
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~ 158 (641)
+..+||+|||||++||++|+.|++.| +|+|+||........ . ++. ..+ ...+.+++. ++
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~-r---a~~--l~~--~~~~~L~~l-----Gl------- 67 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLP-R---AVG--IDD--EALRVLQAI-----GL------- 67 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCC-c---eee--eCH--HHHHHHHHc-----CC-------
Confidence 45689999999999999999999999 999999987432111 0 110 000 000001000 00
Q ss_pred HHHHHhHHHHHHHHHc-----CCccccCCCCCcc--cc-cC-CCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcc
Q 006532 159 VVCTEGPDRIRELIAI-----GASFDRGEDGNLH--LA-RE-GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEH 229 (641)
Q Consensus 159 ~~~~~~~~~i~~l~~~-----Gv~~~~~~~g~~~--~~-~~-gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~ 229 (641)
.+.+.+. ++.|.. .+|... +. .. +.+.++.. .......+.+.|.+.+.+..|++|+.+
T Consensus 68 ---------~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~~---~~~~q~~le~~L~~~~~~~~gv~v~~g 134 (538)
T PRK06183 68 ---------ADEVLPHTTPNHGMRFLD-AKGRCLAEIARPSTGEFGWPRR---NAFHQPLLEAVLRAGLARFPHVRVRFG 134 (538)
T ss_pred ---------hhHHHhhcccCCceEEEc-CCCCEEEEEcCCCCCCCCCChh---ccCChHHHHHHHHHHHHhCCCcEEEcC
Confidence 0111111 122211 122111 00 00 00001100 111233466777777776569999999
Q ss_pred eEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 230 HFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 230 ~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
++|+++..++++ +. +.+.+ .+|+..+++|+.||.|+|..+.+
T Consensus 135 ~~v~~i~~~~~~----v~-v~~~~-~~G~~~~i~ad~vVgADG~~S~v 176 (538)
T PRK06183 135 HEVTALTQDDDG----VT-VTLTD-ADGQRETVRARYVVGCDGANSFV 176 (538)
T ss_pred CEEEEEEEcCCe----EE-EEEEc-CCCCEEEEEEEEEEecCCCchhH
Confidence 999999887443 32 33322 25666689999999999988853
No 179
>PRK06184 hypothetical protein; Provisional
Probab=98.88 E-value=4.1e-08 Score=109.03 Aligned_cols=62 Identities=16% Similarity=0.087 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..+...|.+.+.+ .|++++.+++++++..++++ +. +.+.+..+ ...++|+.||.|+|+.+.+
T Consensus 109 ~~le~~L~~~l~~-~gv~i~~~~~v~~i~~~~~~----v~-v~~~~~~~--~~~i~a~~vVgADG~~S~v 170 (502)
T PRK06184 109 WRTERILRERLAE-LGHRVEFGCELVGFEQDADG----VT-ARVAGPAG--EETVRARYLVGADGGRSFV 170 (502)
T ss_pred HHHHHHHHHHHHH-CCCEEEeCcEEEEEEEcCCc----EE-EEEEeCCC--eEEEEeCEEEECCCCchHH
Confidence 3466778888877 49999999999999876443 32 22222222 3479999999999998853
No 180
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.87 E-value=3.7e-09 Score=111.29 Aligned_cols=151 Identities=23% Similarity=0.228 Sum_probs=90.2
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcc--ccccCceeec--cCCCCCHHHHHHHHHHhccCCCCHHH
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT--NYAQGGVSAV--LCPSDSVESHMQDTIVAGAYLCDDET 156 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s--~~a~ggi~~~--~~~~d~~~~~~~d~~~~g~~~~~~~~ 156 (641)
.|||+|||||-||+-||+.+++.| +++|+.-..-.-|.. +-+-||+.-- ...-|.
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDA-------------------- 63 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDA-------------------- 63 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehh--------------------
Confidence 499999999999999999999999 999988754322222 2244555311 000000
Q ss_pred HHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006532 157 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 236 (641)
Q Consensus 157 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~ 236 (641)
....+-....+.|+.|.-... ....+-...| .......+...+.+.++...|+.++.+ .|++|+
T Consensus 64 ------LGG~Mg~~~D~~~IQ~r~LN~-----sKGPAVra~R----aQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli 127 (621)
T COG0445 64 ------LGGLMGKAADKAGIQFRMLNS-----SKGPAVRAPR----AQADKWLYRRAMKNELENQPNLHLLQG-EVEDLI 127 (621)
T ss_pred ------ccchHHHhhhhcCCchhhccC-----CCcchhcchh----hhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHh
Confidence 000111112233555532110 0001101111 111234455677777877789999987 689999
Q ss_pred ecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 237 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 237 ~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
.+++. +|.||+.. .|. .|.|++|||+||-|-+
T Consensus 128 ~e~~~---~v~GV~t~---~G~--~~~a~aVVlTTGTFL~ 159 (621)
T COG0445 128 VEEGQ---RVVGVVTA---DGP--EFHAKAVVLTTGTFLR 159 (621)
T ss_pred hcCCC---eEEEEEeC---CCC--eeecCEEEEeeccccc
Confidence 86443 68898764 454 6999999999998764
No 181
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.86 E-value=2.5e-08 Score=106.88 Aligned_cols=61 Identities=21% Similarity=0.183 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
-..+...|.+.+.+..+|+++.++.|+.+..+++. +. +.. +. +|+ +++|+.||-|.|..+.
T Consensus 103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~----v~-v~l-~~-dG~--~~~a~llVgADG~~S~ 163 (387)
T COG0654 103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDG----VT-VTL-SF-DGE--TLDADLLVGADGANSA 163 (387)
T ss_pred hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCc----eE-EEE-cC-CCc--EEecCEEEECCCCchH
Confidence 45688899999988667999999999999987543 54 443 22 566 8999999999998874
No 182
>PRK07045 putative monooxygenase; Reviewed
Probab=98.85 E-value=4e-08 Score=105.47 Aligned_cols=61 Identities=21% Similarity=0.229 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
..+.+.|.+.+.+..|++++.++.++++..++++ .+..+.. .+|+ ++.++.||-|+|..+.
T Consensus 106 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~---~~~~v~~---~~g~--~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 106 EQLRRLLLAKLDGLPNVRLRFETSIERIERDADG---TVTSVTL---SDGE--RVAPTVLVGADGARSM 166 (388)
T ss_pred HHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCC---cEEEEEe---CCCC--EEECCEEEECCCCChH
Confidence 3567778888766579999999999999886555 4445543 3454 6899999999998874
No 183
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.85 E-value=1.5e-08 Score=110.91 Aligned_cols=38 Identities=32% Similarity=0.363 Sum_probs=34.0
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 118 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g 118 (641)
...+|+|||+|++|++||..|++.| +|+|+|+.+..+|
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG 178 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG 178 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCc
Confidence 4579999999999999999999999 9999999876544
No 184
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.85 E-value=2.9e-08 Score=107.69 Aligned_cols=55 Identities=9% Similarity=-0.013 Sum_probs=39.4
Q ss_pred cCceEeCCCCC-cccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhc
Q 006532 430 CGGVRAGLQGE-TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 488 (641)
Q Consensus 430 ~GGI~vD~~~~-T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~ 488 (641)
.|+|.||+++| |++||+||+|||+ .+.+. ........|.-.|..+|+++...+..
T Consensus 294 ~G~I~Vd~~l~~~~~~~IfAiGD~a--~~~~~--~~~~~~~~A~~qg~~~A~ni~~~l~g 349 (424)
T PTZ00318 294 RGRISVDDHLRVKPIPNVFALGDCA--ANEER--PLPTLAQVASQQGVYLAKEFNNELKG 349 (424)
T ss_pred CCcEEeCCCcccCCCCCEEEEeccc--cCCCC--CCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999 6999999999997 33221 11122344677888888888877643
No 185
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.84 E-value=1.7e-07 Score=106.68 Aligned_cols=39 Identities=31% Similarity=0.352 Sum_probs=34.9
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 119 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~ 119 (641)
...+|+|||||+|||+||..|++.| +|+|+|+....+|.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~ 348 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGM 348 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCe
Confidence 3578999999999999999999999 99999999876553
No 186
>PRK08244 hypothetical protein; Provisional
Probab=98.84 E-value=5.2e-08 Score=107.95 Aligned_cols=60 Identities=20% Similarity=0.194 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 209 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
.+...|.+.+++ .|++++.++.++++..++++ +. +.+.+ .+| ..+++|+.||.|+|..+.
T Consensus 101 ~le~~L~~~~~~-~gv~v~~~~~v~~i~~~~~~----v~-v~~~~-~~g-~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 101 ETEKVLEEHARS-LGVEIFRGAEVLAVRQDGDG----VE-VVVRG-PDG-LRTLTSSYVVGADGAGSI 160 (493)
T ss_pred HHHHHHHHHHHH-cCCeEEeCCEEEEEEEcCCe----EE-EEEEe-CCc-cEEEEeCEEEECCCCChH
Confidence 456667777766 59999999999999876443 32 33332 234 347999999999998874
No 187
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.84 E-value=3.8e-08 Score=107.60 Aligned_cols=60 Identities=7% Similarity=0.124 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHHHHc----CCC--cEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 206 TGREIERALLEAVVS----DPN--ISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 206 ~g~~~~~~l~~~~~~----~~g--v~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
....+...|.+.+++ . | ++|+++++|++|..++++ +..|. +.+| .|+|+.||+|+|+++.
T Consensus 209 d~~~L~~al~~~a~~~~~~~-G~~v~i~~~t~V~~I~~~~~~----~~~V~---T~~G---~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVP-GKKISINLNTEVLNIERSNDS----LYKIH---TNRG---EIRARFVVVSACGYSL 274 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhc-CCCEEEEeCCEEEEEEecCCC----eEEEE---ECCC---EEEeCEEEECcChhHH
Confidence 356788888888876 4 5 889999999999876332 33333 2455 5899999999999885
No 188
>PRK07190 hypothetical protein; Provisional
Probab=98.83 E-value=5.7e-08 Score=106.84 Aligned_cols=57 Identities=19% Similarity=0.245 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 209 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
.+...|.+.+.+ .|++++.++.|+++..++++ + .+.. .+|+ +++|+.||.|+|+.+.
T Consensus 110 ~le~~L~~~~~~-~Gv~v~~~~~v~~l~~~~~~----v---~v~~-~~g~--~v~a~~vVgADG~~S~ 166 (487)
T PRK07190 110 YVEKLLDDKLKE-AGAAVKRNTSVVNIELNQAG----C---LTTL-SNGE--RIQSRYVIGADGSRSF 166 (487)
T ss_pred HHHHHHHHHHHH-CCCEEEeCCEEEEEEEcCCe----e---EEEE-CCCc--EEEeCEEEECCCCCHH
Confidence 455667777777 59999999999999887443 2 2221 3454 7899999999998774
No 189
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.82 E-value=3.2e-08 Score=104.28 Aligned_cols=34 Identities=32% Similarity=0.403 Sum_probs=31.4
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 116 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~ 116 (641)
.||+|||||++|+.||+.|++.| +|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 49999999999999999999999 99999987653
No 190
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.82 E-value=4.2e-08 Score=105.48 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
..+...|.+.+++ .|++++.++.|+++..++++ +. +.. .+|+ ++.|+.||.|+|..+.
T Consensus 113 ~~l~~~L~~~~~~-~gv~i~~~~~v~~i~~~~~~----v~-v~~---~~g~--~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 113 DLLVDRLWAALHA-AGVQLHCPARVVALEQDADR----VR-LRL---DDGR--RLEAALAIAADGAAST 170 (392)
T ss_pred HHHHHHHHHHHHh-CCCEEEcCCeEEEEEecCCe----EE-EEE---CCCC--EEEeCEEEEecCCCch
Confidence 4677888888887 59999999999999876332 32 322 3454 6899999999998874
No 191
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.81 E-value=7.1e-08 Score=103.56 Aligned_cols=35 Identities=37% Similarity=0.675 Sum_probs=32.7
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 116 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~ 116 (641)
.+||+|||||+||+++|+.|++.| +|+|+||....
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 589999999999999999999999 99999998754
No 192
>PRK11445 putative oxidoreductase; Provisional
Probab=98.80 E-value=1.1e-07 Score=100.53 Aligned_cols=33 Identities=33% Similarity=0.427 Sum_probs=30.1
Q ss_pred ccEEEECccHHHHHHHHHHHhcCCeEEEEecCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEP 115 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G~V~llek~~~ 115 (641)
|||+|||||+||+++|+.|++.-+|+|+||.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGKMKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhccCCEEEEECCCc
Confidence 799999999999999999987559999999864
No 193
>PRK02106 choline dehydrogenase; Validated
Probab=98.80 E-value=1.3e-07 Score=106.33 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=45.3
Q ss_pred HHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 214 LLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 214 l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
++..+.++.|++|+.++.|++|+.+ ++ +++||.+.+. .+....+.||.||||+|++..
T Consensus 206 ~l~~a~~~~nl~i~~~a~V~rI~~~-~~---~a~GV~~~~~-~~~~~~~~ak~VILaaGai~T 263 (560)
T PRK02106 206 YLDPALKRPNLTIVTHALTDRILFE-GK---RAVGVEYERG-GGRETARARREVILSAGAINS 263 (560)
T ss_pred hhccccCCCCcEEEcCCEEEEEEEe-CC---eEEEEEEEeC-CcEEEEEeeeeEEEccCCCCC
Confidence 3344444578999999999999987 44 8999998764 355556789999999998874
No 194
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.80 E-value=6.3e-08 Score=103.37 Aligned_cols=60 Identities=10% Similarity=0.342 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
-..+...|.+.+.+..+++++.++.++++..++++ +. +.+ .++ +++|+.||.|.|..+.+
T Consensus 103 r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~----v~-v~~---~~~---~~~adlvIgADG~~S~v 162 (374)
T PRK06617 103 NSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY----SI-IKF---DDK---QIKCNLLIICDGANSKV 162 (374)
T ss_pred HHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe----EE-EEE---cCC---EEeeCEEEEeCCCCchh
Confidence 35678889988887656999999999999876443 32 322 233 69999999999988754
No 195
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.79 E-value=9.6e-08 Score=102.35 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 209 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
.+...|.+.+.+..+++++.++.|+++..++++ +. +.+ .+|+ +++|+.||.|+|..+.+
T Consensus 111 ~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~----~~-v~~---~~g~--~~~~~lvIgADG~~S~v 169 (384)
T PRK08849 111 LIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG----NR-VTL---ESGA--EIEAKWVIGADGANSQV 169 (384)
T ss_pred HHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe----EE-EEE---CCCC--EEEeeEEEEecCCCchh
Confidence 466677777776668999999999999876443 21 322 3454 68999999999988753
No 196
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.78 E-value=1.3e-07 Score=106.22 Aligned_cols=157 Identities=17% Similarity=0.242 Sum_probs=84.8
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~ 159 (641)
..+||+|||||++||++|+.|++.| +|+|+||........ . ++ ...+ .+ .+.+..+ ++
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~-r---a~--~l~~-~~-~~~l~~l-----Gl-------- 80 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGS-R---AI--CFAK-RS-LEIFDRL-----GC-------- 80 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCC-e---EE--EEcH-HH-HHHHHHc-----CC--------
Confidence 5689999999999999999999999 999999987432111 0 11 0100 00 0111000 00
Q ss_pred HHHHhHHHHHHHHHcCCcccc----CCCCCcc---cccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEE
Q 006532 160 VCTEGPDRIRELIAIGASFDR----GEDGNLH---LAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFA 232 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~----~~~g~~~---~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v 232 (641)
.+.+.+.+..+.. ..++.+. .....+..++..+. ..-..+...|.+.+.+..+++++.++.+
T Consensus 81 --------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~q~~le~~L~~~~~~~~~v~v~~~~~v 149 (547)
T PRK08132 81 --------GERMVDKGVSWNVGKVFLRDEEVYRFDLLPEPGHRRPAFIN---LQQYYVEGYLVERAQALPNIDLRWKNKV 149 (547)
T ss_pred --------cHHHHhhCceeeceeEEeCCCeEEEecCCCCCCCCCCceEe---cCHHHHHHHHHHHHHhCCCcEEEeCCEE
Confidence 0111111211110 0001110 00001111111111 1223466777887876568999999999
Q ss_pred EEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 233 IDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 233 ~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
+++..++++ +. +.+.+ .+| ..+++|+.||.|+|..+.
T Consensus 150 ~~i~~~~~~----v~-v~~~~-~~g-~~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 150 TGLEQHDDG----VT-LTVET-PDG-PYTLEADWVIACDGARSP 186 (547)
T ss_pred EEEEEcCCE----EE-EEEEC-CCC-cEEEEeCEEEECCCCCcH
Confidence 999876443 22 23322 233 346899999999998885
No 197
>PRK08013 oxidoreductase; Provisional
Probab=98.78 E-value=9.1e-08 Score=103.11 Aligned_cols=60 Identities=10% Similarity=0.093 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..+...|.+.+.+..|++++.++.|+++..++++ + -+.+ .+|+ +++|+.||-|.|..+.+
T Consensus 111 ~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~----v-~v~~---~~g~--~i~a~lvVgADG~~S~v 170 (400)
T PRK08013 111 SVIHYALWQKAQQSSDITLLAPAELQQVAWGENE----A-FLTL---KDGS--MLTARLVVGADGANSWL 170 (400)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe----E-EEEE---cCCC--EEEeeEEEEeCCCCcHH
Confidence 4577888888877568999999999999876443 2 1222 3454 68999999999988753
No 198
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.78 E-value=1e-07 Score=102.46 Aligned_cols=63 Identities=16% Similarity=0.015 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..+.+.|++.+.+ .|+++++++.++++...++. ...|.+. .+|+..+++|+.||-|.|..+.+
T Consensus 103 ~~l~~~Ll~~a~~-~gv~v~~~~~v~~i~~~~~~----~~~V~~~--~~G~~~~i~ad~vVgADG~~S~v 165 (392)
T PRK08243 103 TEVTRDLMAARLA-AGGPIRFEASDVALHDFDSD----RPYVTYE--KDGEEHRLDCDFIAGCDGFHGVS 165 (392)
T ss_pred HHHHHHHHHHHHh-CCCeEEEeeeEEEEEecCCC----ceEEEEE--cCCeEEEEEeCEEEECCCCCCch
Confidence 3456777777766 59999999999998752122 2234432 35766789999999999988753
No 199
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.78 E-value=6.6e-08 Score=104.33 Aligned_cols=59 Identities=17% Similarity=0.130 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
...+...|.+.+.+ .|++++.++.|+++..+++ .+ .+.. .+|+ .+.|+.||.|+|..+.
T Consensus 110 r~~l~~~L~~~~~~-~gv~v~~~~~v~~i~~~~~----~v-~v~~---~~g~--~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 110 NRVLINALRKRAEA-LGIDLREATSVTDFETRDE----GV-TVTL---SDGS--VLEARLLVAADGARSK 168 (403)
T ss_pred hHHHHHHHHHHHHh-CCCEEEcCCEEEEEEEcCC----EE-EEEE---CCCC--EEEeCEEEEcCCCChH
Confidence 45688889888887 4999999999999986633 22 1322 3454 5899999999998765
No 200
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.77 E-value=1.1e-07 Score=101.04 Aligned_cols=55 Identities=15% Similarity=0.047 Sum_probs=40.2
Q ss_pred cCceEeCCCCCc-ccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhc
Q 006532 430 CGGVRAGLQGET-NVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 488 (641)
Q Consensus 430 ~GGI~vD~~~~T-~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~ 488 (641)
.|+|.||+++|| ++|++||+|||+ .+... ........|.-.|+.+|+++...++.
T Consensus 257 ~g~i~vd~~l~~~~~~~Iya~GD~~--~~~~~--~~~~~~~~A~~~g~~~a~ni~~~l~g 312 (364)
T TIGR03169 257 DGFLRVDPTLQSLSHPHVFAAGDCA--VITDA--PRPKAGVYAVRQAPILAANLRASLRG 312 (364)
T ss_pred CCeEEECCccccCCCCCEEEeeeee--ecCCC--CCCCchHHHHHhHHHHHHHHHHHhcC
Confidence 588999999998 999999999997 23221 11122345778899999888877644
No 201
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.77 E-value=1.1e-07 Score=102.35 Aligned_cols=60 Identities=22% Similarity=0.274 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..+...|.+.+.+..|++++.++.++++..++++ + .+.. .+|+ +++|+.||.|+|..+.+
T Consensus 112 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~----~-~v~~---~~g~--~~~a~~vI~AdG~~S~v 171 (391)
T PRK08020 112 RVLQLALWQALEAHPNVTLRCPASLQALQRDDDG----W-ELTL---ADGE--EIQAKLVIGADGANSQV 171 (391)
T ss_pred HHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe----E-EEEE---CCCC--EEEeCEEEEeCCCCchh
Confidence 4566788888776559999999999999765332 2 2322 3454 68999999999988753
No 202
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.76 E-value=8.1e-08 Score=102.91 Aligned_cols=59 Identities=15% Similarity=0.265 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
..+...|.+.+.+..+++++.++.|+++..++ + .+ .+.. .+|+ .+.++.||.|+|..+.
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~---~~-~v~~---~~g~--~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRHS-D---HV-ELTL---DDGQ--QLRARLLVGADGANSK 164 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEecC-C---ee-EEEE---CCCC--EEEeeEEEEeCCCCCH
Confidence 45778888888875349999999999998763 3 23 2322 3554 5899999999998775
No 203
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.73 E-value=1.7e-07 Score=100.54 Aligned_cols=37 Identities=38% Similarity=0.629 Sum_probs=33.6
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
.+..+||+|||||++|+++|+.|++.| +|+|+|+...
T Consensus 4 ~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 4 EKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 345689999999999999999999999 9999999864
No 204
>PRK06847 hypothetical protein; Provisional
Probab=98.72 E-value=2.5e-07 Score=98.76 Aligned_cols=153 Identities=16% Similarity=0.182 Sum_probs=84.1
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHH
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 160 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~ 160 (641)
..||+|||||++||++|+.|++.| +|+|+|+...... ...|+.. . +...+.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~----~g~g~~l--~---------------------~~~~~~l 56 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRV----YGAGITL--Q---------------------GNALRAL 56 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcc----CCceeee--c---------------------HHHHHHH
Confidence 469999999999999999999999 9999999764321 0112211 0 0000000
Q ss_pred HHHhHHHHHHHHHcCCcccc----CCCCCccccc----CCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEE
Q 006532 161 CTEGPDRIRELIAIGASFDR----GEDGNLHLAR----EGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFA 232 (641)
Q Consensus 161 ~~~~~~~i~~l~~~Gv~~~~----~~~g~~~~~~----~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v 232 (641)
... ...+.+.+.+.++.. +.+|...... ..+..++. ........+...|.+.+.+ .|++++.++.|
T Consensus 57 ~~~--gl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~i~r~~l~~~L~~~~~~-~gv~v~~~~~v 130 (375)
T PRK06847 57 REL--GVLDECLEAGFGFDGVDLFDPDGTLLAELPTPRLAGDDLPG---GGGIMRPALARILADAARA-AGADVRLGTTV 130 (375)
T ss_pred HHc--CCHHHHHHhCCCccceEEECCCCCEEEecCcccccccCCCC---cccCcHHHHHHHHHHHHHH-hCCEEEeCCEE
Confidence 000 001111222222110 1122211000 00000000 0112345677888888876 49999999999
Q ss_pred EEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 233 IDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 233 ~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
+++..++ + .+ .+.. .+|+ ++.|+.||.|+|..+..
T Consensus 131 ~~i~~~~-~---~~-~v~~---~~g~--~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 131 TAIEQDD-D---GV-TVTF---SDGT--TGRYDLVVGADGLYSKV 165 (375)
T ss_pred EEEEEcC-C---EE-EEEE---cCCC--EEEcCEEEECcCCCcch
Confidence 9997653 3 22 2332 3454 58999999999988753
No 205
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.72 E-value=1.2e-07 Score=102.00 Aligned_cols=59 Identities=12% Similarity=0.240 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 209 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
.+.+.|.+.+.+..|++++.+++|+++..++++ +. +.. .+|. .+.|+.||.|+|..+.+
T Consensus 113 ~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~----~~-v~~---~~g~--~~~a~~vI~AdG~~S~v 171 (395)
T PRK05732 113 DVGQRLFALLDKAPGVTLHCPARVANVERTQGS----VR-VTL---DDGE--TLTGRLLVAADGSHSAL 171 (395)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe----EE-EEE---CCCC--EEEeCEEEEecCCChhh
Confidence 455677777766568999999999999765332 21 322 3443 58999999999988753
No 206
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.71 E-value=3.6e-07 Score=102.13 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 212 RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 212 ~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
..++..+.++.|++|+.++.|++|+.+ ++ +++||.+.+. ++....+.||.||||+|++..
T Consensus 197 ~~~l~~a~~r~nl~i~~~~~V~rI~~~-~~---ra~GV~~~~~-~~~~~~~~ak~VIlaAGai~S 256 (532)
T TIGR01810 197 RAYLHPAMKRPNLEVQTRAFVTKINFE-GN---RATGVEFKKG-GRKEHTEANKEVILSAGAINS 256 (532)
T ss_pred HHHhhhhccCCCeEEEeCCEEEEEEec-CC---eEEEEEEEeC-CcEEEEEEeeeEEEccCCCCC
Confidence 334444554569999999999999987 55 8999988652 233444688999999998663
No 207
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.71 E-value=7.4e-07 Score=98.72 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
..+...|.+.+++ .|++|+.+++|.+|..+ ++ ++.||.+. +|+ .+.|+.||+|+|.+.
T Consensus 229 ~~l~~~L~~~~~~-~G~~i~~~~~V~~I~~~-~~---~~~gv~~~---~g~--~~~ad~vV~a~~~~~ 286 (493)
T TIGR02730 229 GQIAESLVKGLEK-HGGQIRYRARVTKIILE-NG---KAVGVKLA---DGE--KIYAKRIVSNATRWD 286 (493)
T ss_pred HHHHHHHHHHHHH-CCCEEEeCCeeeEEEec-CC---cEEEEEeC---CCC--EEEcCEEEECCChHH
Confidence 5688889999988 59999999999999886 45 67788653 454 588999999999654
No 208
>PRK07538 hypothetical protein; Provisional
Probab=98.71 E-value=2.3e-07 Score=100.49 Aligned_cols=65 Identities=18% Similarity=0.073 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHcCCC-cEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 207 GREIERALLEAVVSDPN-ISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~g-v~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
-..+...|.+.+.+..| ++|+.++.|+++..++++ .++ .+.+..+|+..+++||.||-|.|..+.
T Consensus 101 R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~---~~~--~~~~~~~g~~~~~~adlvIgADG~~S~ 166 (413)
T PRK07538 101 RGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADV---TVV--FLGDRAGGDLVSVRGDVLIGADGIHSA 166 (413)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCc---eEE--EEeccCCCccceEEeeEEEECCCCCHH
Confidence 34567778887765335 579999999999876444 332 233333455568999999999998775
No 209
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.70 E-value=2.3e-07 Score=99.96 Aligned_cols=60 Identities=18% Similarity=0.317 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..+...|.+.+.+..+++++.++.++++..++++ + .+.. .+|+ ++.|+.||.|+|..+..
T Consensus 109 ~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~----v---~v~~-~~g~--~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 109 ADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG----V---TVFD-QQGN--RWTGDALIGCDGVKSVV 168 (396)
T ss_pred HHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc----e---EEEE-cCCC--EEecCEEEECCCcChHH
Confidence 4577788888876556999999999999865332 2 2222 3454 58999999999988865
No 210
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.70 E-value=1.3e-07 Score=102.14 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
..+...|.+.+.+ .|++++.++.++++..++++ +. +.. .+|+ +++|+.||.|+|..+.
T Consensus 112 ~~l~~~L~~~~~~-~gv~v~~~~~v~~i~~~~~~----v~-v~~---~~g~--~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 112 RVVQDALLERLHD-SDIGLLANARLEQMRRSGDD----WL-LTL---ADGR--QLRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHHHHHHhc-CCCEEEcCCEEEEEEEcCCe----EE-EEE---CCCC--EEEeCEEEEecCCCch
Confidence 3566788888877 49999999999999876432 21 222 3453 5899999999998875
No 211
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.69 E-value=3.9e-07 Score=100.10 Aligned_cols=56 Identities=11% Similarity=0.181 Sum_probs=47.0
Q ss_pred cCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 220 SDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 220 ~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
+..+++|+.++.|++|+.++++ ..+|.||.+.+..+|+.+.++|+.||||+|+...
T Consensus 225 ~~~n~~l~~~a~v~~i~~d~~~-~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIet 280 (544)
T TIGR02462 225 PSERFTLLTNHRCTRLVRNETN-ESEIEAALVRDLLSGDRFEIKADVYVLACGAVHN 280 (544)
T ss_pred cCCCEEEEcCCEEEEEEeCCCC-CceeEEEEEEECCCCcEEEEECCEEEEccCchhh
Confidence 3468999999999999987432 1279999999876788889999999999999875
No 212
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.69 E-value=3.2e-07 Score=98.50 Aligned_cols=63 Identities=17% Similarity=0.068 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..+...|.+.+.+ .|+.++.++.++.+...++. ..+|.+. .+|+...++|+.||-|.|..+.+
T Consensus 103 ~~l~~~L~~~~~~-~g~~~~~~~~~v~~~~~~~~----~~~V~~~--~~g~~~~i~adlvIGADG~~S~V 165 (390)
T TIGR02360 103 TEVTRDLMEAREA-AGLTTVYDADDVRLHDLAGD----RPYVTFE--RDGERHRLDCDFIAGCDGFHGVS 165 (390)
T ss_pred HHHHHHHHHHHHh-cCCeEEEeeeeEEEEecCCC----ccEEEEE--ECCeEEEEEeCEEEECCCCchhh
Confidence 3566778887776 48999999888887652222 1234442 25666689999999999988853
No 213
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.67 E-value=1e-07 Score=92.34 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCC
Q 006532 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 206 ~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
++..+.+.|...+++ .++++..++.|+++..++++ ..+ ...++ ..++|+.||+|||.++
T Consensus 80 ~~~~v~~yl~~~~~~-~~l~i~~~~~V~~v~~~~~~-------w~v-~~~~~--~~~~a~~VVlAtG~~~ 138 (203)
T PF13738_consen 80 SGEEVLDYLQEYAER-FGLEIRFNTRVESVRRDGDG-------WTV-TTRDG--RTIRADRVVLATGHYS 138 (203)
T ss_dssp BHHHHHHHHHHHHHH-TTGGEETS--EEEEEEETTT-------EEE-EETTS---EEEEEEEEE---SSC
T ss_pred CHHHHHHHHHHHHhh-cCcccccCCEEEEEEEeccE-------EEE-EEEec--ceeeeeeEEEeeeccC
Confidence 356677777777766 59999999999999987443 222 23455 4688999999999765
No 214
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.67 E-value=2.9e-07 Score=98.63 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
..+...|.+.+.+..|++++.++.|+++..++++ + .+.. .+|+ .+.|+.||.|+|..+.
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~----~-~v~~---~~g~--~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY----V-RVTL---DNGQ--QLRAKLLIAADGANSK 163 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe----E-EEEE---CCCC--EEEeeEEEEecCCChH
Confidence 4577888888876449999999999999876432 2 2322 3454 6899999999998764
No 215
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.67 E-value=2.3e-07 Score=100.22 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..+...|.+.+.+..|++++.++.|+++..++++ + .+.. .+|+ .++|+.||.|.|..+.+
T Consensus 111 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~----~-~v~~---~~g~--~~~a~lvIgADG~~S~v 170 (405)
T PRK08850 111 RVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE----A-WLTL---DNGQ--ALTAKLVVGADGANSWL 170 (405)
T ss_pred HHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe----E-EEEE---CCCC--EEEeCEEEEeCCCCChh
Confidence 3466778888876568999999999999876432 2 2332 3554 68999999999987743
No 216
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.66 E-value=9.9e-08 Score=107.27 Aligned_cols=52 Identities=15% Similarity=0.168 Sum_probs=42.5
Q ss_pred ccCceEeCC-CCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcc
Q 006532 429 MCGGVRAGL-QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKST 489 (641)
Q Consensus 429 ~~GGI~vD~-~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~ 489 (641)
..|.|.||. .++|++||+||+||++ .|. ..+..|+-.|+.||.++..++...
T Consensus 394 ~~G~i~vd~~~~~ts~~~Vfa~GD~~-~g~--------~~v~~Av~~G~~aA~~i~~~L~g~ 446 (564)
T PRK12771 394 GRGVVQVDPNFMMTGRPGVFAGGDMV-PGP--------RTVTTAIGHGKKAARNIDAFLGGE 446 (564)
T ss_pred CCCCEEeCCCCccCCCCCEEeccCcC-CCc--------hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 346789998 6789999999999997 332 357789999999999999988644
No 217
>PLN02785 Protein HOTHEAD
Probab=98.65 E-value=7.5e-07 Score=99.72 Aligned_cols=55 Identities=15% Similarity=0.170 Sum_probs=40.7
Q ss_pred CCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEE-----EcCEEEEcCCCCCc
Q 006532 221 DPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRF-----ISKVTLLASGGAGH 276 (641)
Q Consensus 221 ~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i-----~Ak~VVlAtGg~~~ 276 (641)
..|++|+.++.|++|+.+++++..+++||.+.+. +|..+.+ .++.||||+|+++.
T Consensus 232 ~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~-~g~~~~~~~~~~~~~eVILsAGai~s 291 (587)
T PLN02785 232 PNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDE-NGNQHQAFLSNNKGSEIILSAGAIGS 291 (587)
T ss_pred CCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEEC-CCceEEEEeecccCceEEecccccCC
Confidence 3689999999999999874322237999998774 3443332 24899999999874
No 218
>PRK09897 hypothetical protein; Provisional
Probab=98.60 E-value=1.3e-06 Score=96.32 Aligned_cols=36 Identities=11% Similarity=0.381 Sum_probs=30.9
Q ss_pred ccEEEECccHHHHHHHHHHHhcC---CeEEEEecCCCCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHES 118 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G---~V~llek~~~~~g 118 (641)
.+|+|||||++|+++|..|.+.+ +|+|+|+....|.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~ 40 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGV 40 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCc
Confidence 37999999999999999998765 7999999765543
No 219
>PTZ00367 squalene epoxidase; Provisional
Probab=98.60 E-value=7.2e-07 Score=99.24 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=32.1
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.++||+|||||++|+++|+.|++.| +|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 4699999999999999999999999 999999975
No 220
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.60 E-value=6.4e-07 Score=88.89 Aligned_cols=190 Identities=14% Similarity=0.170 Sum_probs=100.7
Q ss_pred cccccEEEECccHHHHHHHHHHHhc----C-CeEEEEecCCC-CCccccccCceeeccCCCCC--HHHHHHHHHHhc-cC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKH----G-TVAVITKAEPH-ESNTNYAQGGVSAVLCPSDS--VESHMQDTIVAG-AY 150 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~----G-~V~llek~~~~-~g~s~~a~ggi~~~~~~~d~--~~~~~~d~~~~g-~~ 150 (641)
..+|||||||||..|++.|+.|.++ | +|+||||+... .++|..+.||||...+.... ...+-.+.++.. .+
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~eh 163 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAREH 163 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccchhhhhhhHHHHHHHHHHHh
Confidence 4589999999999999999999763 6 99999998754 35566688999876653322 222222333211 11
Q ss_pred C--------------------CCHHHHHHHHHHhHHHHHHHHHcCCccccCC-C---CCcc-cccCCCcc-ccceeeccC
Q 006532 151 L--------------------CDDETVRVVCTEGPDRIRELIAIGASFDRGE-D---GNLH-LAREGGHS-HHRIVHAAD 204 (641)
Q Consensus 151 ~--------------------~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~-~---g~~~-~~~~gg~~-~~r~~~~~~ 204 (641)
+ ..++-+..+...+ +--.+.|....-.. + .++. +.-+|-.- ...+-..+.
T Consensus 164 l~~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~----kvQ~e~GAk~eLls~d~Lt~rfPwlntegVaLa~lG~e~EGw 239 (509)
T KOG2853|consen 164 LGILDSEQVDLNFFPTGYLRLASEEEAEMMRSNS----KVQNELGAKVELLSPDELTKRFPWLNTEGVALASLGVEKEGW 239 (509)
T ss_pred hccccCCCCCcccCCCceEEEcchhhHHHHHHhH----HHHHhhcchhcccCHHHHhhhCCcccccceeeeecccccccc
Confidence 1 1111111111110 11112232211000 0 0000 00000000 000000011
Q ss_pred CcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec---------CCC----CCceEEEEEEEecCCCeEEEEEcCEEEEcC
Q 006532 205 MTGREIERALLEAVVSDPNISVFEHHFAIDLLTT---------LDG----PDAVCHGVDTLNVETQEVVRFISKVTLLAS 271 (641)
Q Consensus 205 ~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~---------~~g----~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAt 271 (641)
.....+...+.+++.. .|+.+..+ +|+++..+ +++ ...++.|+++. ..++....+++..+|+|+
T Consensus 240 fdpw~LLs~~rrk~~~-lGv~f~~G-eV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~-m~d~~~r~vk~al~V~aA 316 (509)
T KOG2853|consen 240 FDPWALLSGIRRKAIT-LGVQFVKG-EVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVR-MNDALARPVKFALCVNAA 316 (509)
T ss_pred cCHHHHHHHHHHHhhh-hcceEecc-eEEEEEEecccceeeecccchhhhhhcccceeEEe-cCchhcCceeEEEEEecc
Confidence 2345677777777776 59988877 66666543 222 11246677664 456666789999999999
Q ss_pred CCCCc
Q 006532 272 GGAGH 276 (641)
Q Consensus 272 Gg~~~ 276 (641)
|+++.
T Consensus 317 Ga~s~ 321 (509)
T KOG2853|consen 317 GAWSG 321 (509)
T ss_pred CccHH
Confidence 99874
No 221
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=1.3e-07 Score=97.49 Aligned_cols=155 Identities=22% Similarity=0.306 Sum_probs=89.5
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCC--CCccccccCceeec--cCCCCCHHHHHHHHHHhccCCCCH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH--ESNTNYAQGGVSAV--LCPSDSVESHMQDTIVAGAYLCDD 154 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~--~g~s~~a~ggi~~~--~~~~d~~~~~~~d~~~~g~~~~~~ 154 (641)
+..|||+|||||-||+-||..+++.| +.+|+...-.. .-+.+-+-||+.-- ...-|...-.. ...||.
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~-------~rvcD~ 98 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLC-------SRVCDQ 98 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchH-------hhhhhh
Confidence 55799999999999999999999999 99999875432 22223344666311 11111100000 011222
Q ss_pred HHHHHHHHHhHHHHHHHHH-cCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEE
Q 006532 155 ETVRVVCTEGPDRIRELIA-IGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAI 233 (641)
Q Consensus 155 ~~~~~~~~~~~~~i~~l~~-~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~ 233 (641)
..+ ....|.. .|-.+. -+| .....+.+...+.+.+...++.+|+++ .|.
T Consensus 99 s~v---------q~k~LNrs~GPAVw----------------g~R----AQiDR~lYkk~MQkei~st~nL~ire~-~V~ 148 (679)
T KOG2311|consen 99 SGV---------QYKVLNRSKGPAVW----------------GLR----AQIDRKLYKKNMQKEISSTPNLEIREG-AVA 148 (679)
T ss_pred hhh---------hHHHhhccCCCccc----------------ChH----HhhhHHHHHHHHHHHhccCCcchhhhh-hhh
Confidence 221 1111211 010000 011 111234456667777776678999988 677
Q ss_pred EEEecCCC-CCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 234 DLLTTLDG-PDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 234 ~l~~~~~g-~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
+|+..+.+ ...+|.||+..| |. .|.|+.|||.||-|-+
T Consensus 149 dliv~~~~~~~~~~~gV~l~d---gt--~v~a~~VilTTGTFL~ 187 (679)
T KOG2311|consen 149 DLIVEDPDDGHCVVSGVVLVD---GT--VVYAESVILTTGTFLR 187 (679)
T ss_pred heeeccCCCCceEEEEEEEec---Cc--EeccceEEEeecccee
Confidence 88765322 235688998864 54 6999999999998754
No 222
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.59 E-value=5.9e-07 Score=96.41 Aligned_cols=34 Identities=47% Similarity=0.725 Sum_probs=31.2
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHE 117 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~ 117 (641)
||+|||||+||+++|+.|++.| +|+|||+.+..+
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~ 35 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIP 35 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCC
Confidence 8999999999999999999999 999999986443
No 223
>PRK06996 hypothetical protein; Provisional
Probab=98.58 E-value=1e-06 Score=94.98 Aligned_cols=58 Identities=19% Similarity=0.161 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecC-CCeEEEEEcCEEEEcCCCC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVE-TQEVVRFISKVTLLASGGA 274 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~-~g~~~~i~Ak~VVlAtGg~ 274 (641)
..+.+.|.+.+.+ .+++++.++.++++..+.++ +.+.... +|+ ..++|+.||.|+|+.
T Consensus 115 ~~l~~~L~~~~~~-~g~~~~~~~~v~~~~~~~~~-------v~v~~~~~~g~-~~i~a~lvIgADG~~ 173 (398)
T PRK06996 115 GSLVAALARAVRG-TPVRWLTSTTAHAPAQDADG-------VTLALGTPQGA-RTLRARIAVQAEGGL 173 (398)
T ss_pred HHHHHHHHHHHHh-CCCEEEcCCeeeeeeecCCe-------EEEEECCCCcc-eEEeeeEEEECCCCC
Confidence 4677888888887 48999999999998765333 3332111 232 469999999999964
No 224
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.58 E-value=7.3e-07 Score=98.23 Aligned_cols=39 Identities=33% Similarity=0.559 Sum_probs=36.1
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s 120 (641)
.+||+|||||..||+||..|+++| +|+|+||....||..
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a 42 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRA 42 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcce
Confidence 589999999999999999999999 999999999887743
No 225
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.58 E-value=7.8e-07 Score=95.91 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..+...|.+.+.+..+++++.++.|+++..++++ + -+.+.+..++ ..+.||.||-|.|..+.+
T Consensus 107 ~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~----v-~v~~~~~~~~--~~~~adlvIgADG~~S~v 169 (400)
T PRK06475 107 ADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS----I-TATIIRTNSV--ETVSAAYLIACDGVWSML 169 (400)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc----e-EEEEEeCCCC--cEEecCEEEECCCccHhH
Confidence 4677888888876568999999999999865332 3 2333332223 268999999999988854
No 226
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.57 E-value=7.9e-07 Score=96.87 Aligned_cols=39 Identities=33% Similarity=0.461 Sum_probs=34.8
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 119 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~ 119 (641)
...+|+|||||+|||+||..|.+.| +|+|+||....||.
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~ 48 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGL 48 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcce
Confidence 3579999999999999999999999 99999998866543
No 227
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.57 E-value=1.9e-07 Score=86.49 Aligned_cols=144 Identities=20% Similarity=0.280 Sum_probs=88.1
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC---CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 157 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G---~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~ 157 (641)
.+.||+|||+|.|||+||+..+++. +|.|||..-.++|++ |-+|-+.
T Consensus 75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa-WLGGQLF----------------------------- 124 (328)
T KOG2960|consen 75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA-WLGGQLF----------------------------- 124 (328)
T ss_pred hccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc-cccchhh-----------------------------
Confidence 3679999999999999999999664 899999987766544 2222110
Q ss_pred HHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006532 158 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 158 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
..++-+. .+--+|.+.|++++.+ |.|... .| ..-+...+..++...++|++++-+-|.+|+.
T Consensus 125 SAMvvRK-PAhLFL~EigvpYede--gdYVVV----------KH-----AALFtSTvmsk~LalPNVKLFNAtavEDLiv 186 (328)
T KOG2960|consen 125 SAMVVRK-PAHLFLQEIGVPYEDE--GDYVVV----------KH-----AALFTSTVMSKVLALPNVKLFNATAVEDLIV 186 (328)
T ss_pred hhhhhcC-hHHHHHHHhCCCcccC--CCEEEE----------ee-----HHHHHHHHHHHHhcCCcceeechhhhhhhhc
Confidence 0011011 1123567889998754 333221 11 2234555556666679999999999999987
Q ss_pred cCC-CCCceEEEEEEE----ecCCCe-----EEEEEcCEEEEcCC
Q 006532 238 TLD-GPDAVCHGVDTL----NVETQE-----VVRFISKVTLLASG 272 (641)
Q Consensus 238 ~~~-g~~~~v~Gv~~~----~~~~g~-----~~~i~Ak~VVlAtG 272 (641)
.+. ..+-+|.||+.. ....|. .-.|.|+.||-+||
T Consensus 187 k~g~~g~~rvaGVVTNWtLV~qnHgtQsCMDPNviea~~vvS~tG 231 (328)
T KOG2960|consen 187 KPGEKGEVRVAGVVTNWTLVTQNHGTQSCMDPNVIEAAVVVSTTG 231 (328)
T ss_pred ccCcCCceEEEEEEeeeEEeeeccCccccCCCCeeeEEEEEEccC
Confidence 631 113367777542 111111 23567777776666
No 228
>PRK07236 hypothetical protein; Provisional
Probab=98.56 E-value=8.9e-07 Score=94.98 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=32.2
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
...||+|||||++||++|+.|++.| +|+|+||.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 3479999999999999999999999 9999999863
No 229
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.53 E-value=5.3e-07 Score=94.13 Aligned_cols=71 Identities=21% Similarity=0.205 Sum_probs=48.8
Q ss_pred cCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccch-hhhHHHHHHHHHHHHHH
Q 006532 411 YGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLAS-NSLLEALVFARRAVQPS 482 (641)
Q Consensus 411 ~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g-~sl~~a~v~G~~Ag~~a 482 (641)
.|+.|.....+. ....-..|+|.||+.+||++||+||+||++..-+++-+.... --...|..+|+-|+.++
T Consensus 309 iG~~p~t~~~~~-g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai 380 (478)
T KOG1336|consen 309 IGIKPNTSFLEK-GILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAI 380 (478)
T ss_pred eccccccccccc-cceecccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhh
Confidence 366666665555 334456899999999999999999999998655555443322 23455677777666543
No 230
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.52 E-value=1.7e-06 Score=94.36 Aligned_cols=62 Identities=13% Similarity=0.204 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCC--CcEEEcceEEEEEEec-----CCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 208 REIERALLEAVVSDP--NISVFEHHFAIDLLTT-----LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~--gv~i~~~~~v~~l~~~-----~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..+...|.+.+.+.. +++++.+++|+++..+ +++ .++.+. ..+|+ +++|+.||.|.|..+.+
T Consensus 117 ~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~-----~~v~v~-~~~g~--~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 117 DNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNS-----NWVHIT-LSDGQ--VLYTKLLIGADGSNSNV 185 (437)
T ss_pred HHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCC-----CceEEE-EcCCC--EEEeeEEEEecCCCChh
Confidence 457778888887754 5999999999999752 111 122222 23564 69999999999998853
No 231
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.51 E-value=1.4e-06 Score=86.48 Aligned_cols=60 Identities=13% Similarity=0.054 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCC
Q 006532 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA 274 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~ 274 (641)
|-.+...|..++++ .|..++.+-.|.+.... ++ +|..+... +...+.++|+..|||||+|
T Consensus 257 GiRl~~~L~~~f~~-~Gg~~m~Gd~V~~a~~~-~~---~v~~i~tr---n~~diP~~a~~~VLAsGsf 316 (421)
T COG3075 257 GIRLHNQLQRQFEQ-LGGLWMPGDEVKKATCK-GG---RVTEIYTR---NHADIPLRADFYVLASGSF 316 (421)
T ss_pred hhhHHHHHHHHHHH-cCceEecCCceeeeeee-CC---eEEEEEec---ccccCCCChhHeeeecccc
Confidence 44556777778877 58899999899888776 45 67777665 4455689999999999977
No 232
>PRK07588 hypothetical protein; Provisional
Probab=98.50 E-value=1.4e-06 Score=93.71 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=30.4
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
||+|||||++||++|+.|++.| +|+|+||...
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 8999999999999999999999 9999999864
No 233
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.49 E-value=7.7e-07 Score=95.62 Aligned_cols=179 Identities=21% Similarity=0.210 Sum_probs=96.0
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-C-eEEEEecCCCCCccccccCceeeccCCCCCHHHHH-HHHH------HhccCC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHM-QDTI------VAGAYL 151 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~-V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~-~d~~------~~g~~~ 151 (641)
...||+|||||.+|+.+|+.+|+.| + .+++|+....+|++..+. |.....-+.|..-+.+ .+.. ..-.++
T Consensus 38 ~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhta-gl~~~lr~~dv~~qlia~~~~~l~~~leeEtgl 116 (856)
T KOG2844|consen 38 STADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTA-GLLWQLFPSDVELQLIAHTSRVLYRELEEETGL 116 (856)
T ss_pred CcccEEEEcCCchhHHHHHHHHHccccceEEEeeeeeccccccccc-cceeeccCCchhHHHHHHHHHHHHHHHHHhcCC
Confidence 4589999999999999999999999 7 566677766666654444 4433333333322221 1100 000000
Q ss_pred C--CHHHHHHHHHHhHHHHHHH---HH----cCCccccC---CCCC-ccc----ccCCCccccceeeccC--CcHHHHHH
Q 006532 152 C--DDETVRVVCTEGPDRIREL---IA----IGASFDRG---EDGN-LHL----AREGGHSHHRIVHAAD--MTGREIER 212 (641)
Q Consensus 152 ~--~~~~~~~~~~~~~~~i~~l---~~----~Gv~~~~~---~~g~-~~~----~~~gg~~~~r~~~~~~--~~g~~~~~ 212 (641)
. -...-..+...+...++.+ .. +|++..-. +.-. +.+ ...++ ...+.| .....++.
T Consensus 117 ~tGwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~-----Ly~P~DG~~DP~~lC~ 191 (856)
T KOG2844|consen 117 HTGWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGG-----LYSPGDGVMDPAGLCQ 191 (856)
T ss_pred CcceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheee-----eecCCCcccCHHHHHH
Confidence 0 0000000111122222222 22 23221100 0000 000 00000 001111 23567888
Q ss_pred HHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 213 ALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 213 ~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
+|...+.+ .|+.|++++.|++|....++ ..||.. ..| .|++..||.|||-+++
T Consensus 192 ala~~A~~-~GA~viE~cpV~~i~~~~~~----~~gVeT---~~G---~iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 192 ALARAASA-LGALVIENCPVTGLHVETDK----FGGVET---PHG---SIETECVVNAAGVWAR 244 (856)
T ss_pred HHHHHHHh-cCcEEEecCCcceEEeecCC----ccceec---cCc---ceecceEEechhHHHH
Confidence 99888887 59999999999999987443 446643 456 5999999999998775
No 234
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.47 E-value=1.2e-05 Score=89.19 Aligned_cols=62 Identities=13% Similarity=0.066 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCC
Q 006532 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGG 273 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg 273 (641)
...+..+|.+.+++ .|++|+.+++|++|+.+ ++ ++.|+++.+..+|+...+.||.||+++-.
T Consensus 231 ~~~l~~aL~~~~~~-~G~~i~~~~~V~~I~~~-~~---~~~gv~~~~~~~~~~~~~~ad~VI~~~~~ 292 (492)
T TIGR02733 231 MQTLSDRLVEALKR-DGGNLLTGQRVTAIHTK-GG---RAGWVVVVDSRKQEDLNVKADDVVANLPP 292 (492)
T ss_pred HHHHHHHHHHHHHh-cCCEEeCCceEEEEEEe-CC---eEEEEEEecCCCCceEEEECCEEEECCCH
Confidence 45688999999987 59999999999999987 44 57788775432333346899999999885
No 235
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.46 E-value=5e-06 Score=94.36 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHcCC-CcEEEcceEEEEEEecCCCCCceEEEEEEEec---CCCeEEEEEcCEEEEcCCCCCcC
Q 006532 209 EIERALLEAVVSDP-NISVFEHHFAIDLLTTLDGPDAVCHGVDTLNV---ETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 209 ~~~~~l~~~~~~~~-gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~---~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
.+...|.+.+.+.. ++++..++.++++..++++. ..| -+.+.+. .+|+..+++||.||-|.|+.+.+
T Consensus 142 ~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~-~~V-~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~V 212 (634)
T PRK08294 142 RVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGE-YPV-TVTLRRTDGEHEGEEETVRAKYVVGCDGARSRV 212 (634)
T ss_pred HHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCC-CCE-EEEEEECCCCCCCceEEEEeCEEEECCCCchHH
Confidence 46677777776632 26788899999998763220 112 2444433 14655689999999999998853
No 236
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.43 E-value=3.6e-06 Score=83.90 Aligned_cols=66 Identities=12% Similarity=0.024 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEec-CCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCC
Q 006532 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTT-LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPST 281 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~ 281 (641)
....++.|...+++ .|+.++.+..|+.+-.. +++ ..++|.. .+|. .+.||.+|+++|+|-..+..+
T Consensus 152 a~kslk~~~~~~~~-~G~i~~dg~~v~~~~~~~e~~---~~v~V~T---t~gs--~Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 152 AAKSLKALQDKARE-LGVIFRDGEKVKFIKFVDEEG---NHVSVQT---TDGS--IYHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred HHHHHHHHHHHHHH-cCeEEecCcceeeEeeccCCC---ceeEEEe---ccCC--eeecceEEEEecHHHHhhcCc
Confidence 34566788888887 59999999988877533 233 3444443 3454 589999999999998655443
No 237
>PRK07208 hypothetical protein; Provisional
Probab=98.42 E-value=1.6e-05 Score=87.93 Aligned_cols=62 Identities=11% Similarity=-0.062 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA 274 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~ 274 (641)
..+...|.+.+.+ .|++|+.+++|++|..++++ .+.++.. +..+|+...+.|+.||+|+-..
T Consensus 218 ~~l~~~L~~~l~~-~g~~i~~~~~V~~I~~~~~~---~v~~~~~-~~~~g~~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 218 GQLWETAAEKLEA-LGGKVVLNAKVVGLHHDGDG---RIAVVVV-NDTDGTEETVTADQVISSMPLR 279 (479)
T ss_pred chHHHHHHHHHHH-cCCEEEeCCEEEEEEEcCCc---EEEEEEE-EcCCCCEEEEEcCEEEECCCHH
Confidence 4577888888877 49999999999999987544 4444433 3234555568999999998753
No 238
>PRK06753 hypothetical protein; Provisional
Probab=98.42 E-value=3.2e-06 Score=90.24 Aligned_cols=33 Identities=33% Similarity=0.572 Sum_probs=31.1
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 116 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~ 116 (641)
||+|||||+|||++|+.|++.| +|+|+||.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 7999999999999999999999 99999998753
No 239
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.42 E-value=7.4e-06 Score=86.19 Aligned_cols=33 Identities=18% Similarity=0.440 Sum_probs=29.6
Q ss_pred ccEEEECccHHHHHHHHHHHhc--C-CeEEEEecCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEP 115 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~--G-~V~llek~~~ 115 (641)
..|||||||.+|+.+|..|.++ + +|+|||+...
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence 4699999999999999999986 5 8999999875
No 240
>PRK05868 hypothetical protein; Validated
Probab=98.41 E-value=3.9e-06 Score=89.44 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=31.0
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 116 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~ 116 (641)
||+|||||++|+++|+.|++.| +|+|+||.+..
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 8999999999999999999999 99999998653
No 241
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.40 E-value=8.7e-06 Score=89.29 Aligned_cols=62 Identities=11% Similarity=0.034 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGG 273 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg 273 (641)
..+...|.+.+++ .|++|..++.|++|..++++ +++|+.+.+...++...+.|+.||+|+..
T Consensus 213 ~~l~~~l~~~l~~-~g~~i~l~~~V~~I~~~~~~---~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITS-RGGEVRLNSRLKEIVLNEDG---SVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHh-cCCEEeCCCeeEEEEECCCC---CEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 4577888888877 49999999999999875555 68888875432223336899999999964
No 242
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.38 E-value=1.2e-05 Score=84.55 Aligned_cols=64 Identities=20% Similarity=0.298 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
-.+.+.|.+.+.+..|+++..+++|++|.+.+|| + --|.+.+..+|+...|+|+.|++.+||.+
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg---~-W~v~~~~~~~~~~~~v~a~FVfvGAGG~a 244 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDG---R-WEVKVKDLKTGEKREVRAKFVFVGAGGGA 244 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCC---C-EEEEEEecCCCCeEEEECCEEEECCchHh
Confidence 4577888888888679999999999999988666 2 23666777888889999999999999887
No 243
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.37 E-value=2.2e-05 Score=87.28 Aligned_cols=56 Identities=13% Similarity=0.036 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGG 273 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg 273 (641)
..+...|.+.+++ .|++|+.++.|++|..+ ++ ++.||.. .+|+ .+.|+.||+|++.
T Consensus 219 ~~l~~al~~~~~~-~G~~i~~~~~V~~i~~~-~~---~~~~V~~---~~g~--~~~ad~VI~a~~~ 274 (502)
T TIGR02734 219 GALVAAMAKLAED-LGGELRLNAEVIRIETE-GG---RATAVHL---ADGE--RLDADAVVSNADL 274 (502)
T ss_pred HHHHHHHHHHHHH-CCCEEEECCeEEEEEee-CC---EEEEEEE---CCCC--EEECCEEEECCcH
Confidence 5678889888887 49999999999999876 44 6777765 3454 5789999999884
No 244
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.35 E-value=1.7e-06 Score=83.64 Aligned_cols=35 Identities=29% Similarity=0.538 Sum_probs=32.4
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 118 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g 118 (641)
+|+|||+|+||++||+.|.+.| +|+|+||+.-.+|
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGG 38 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGG 38 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCccc
Confidence 7999999999999999999999 9999999986555
No 245
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.32 E-value=9e-06 Score=90.53 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=46.2
Q ss_pred HHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCC-eEEEEEcCEEEEcCCCCCc
Q 006532 213 ALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQ-EVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 213 ~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g-~~~~i~Ak~VVlAtGg~~~ 276 (641)
.+...+.++++++|++++.|+.|+.+ .+ +++|+.+.....+ ....+.++.||||+|++..
T Consensus 207 a~l~~a~~~~nl~v~t~a~v~ri~~~-~~---r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~S 267 (542)
T COG2303 207 AYLKPALKRPNLTLLTGARVRRILLE-GD---RAVGVEVEIGDGGTIETAVAAREVVLAAGAINS 267 (542)
T ss_pred hcchhHhcCCceEEecCCEEEEEEEE-CC---eeEEEEEEeCCCCceEEEecCceEEEeccccCC
Confidence 44445666689999999999999998 44 7888888754433 3556778999999999875
No 246
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.28 E-value=1.5e-05 Score=89.54 Aligned_cols=35 Identities=37% Similarity=0.505 Sum_probs=32.5
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
....+|+|||||++||++|+.|++.| +|+|+||..
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 45689999999999999999999999 999999975
No 247
>PLN02612 phytoene desaturase
Probab=98.26 E-value=8.4e-05 Score=83.50 Aligned_cols=57 Identities=11% Similarity=-0.057 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGG 273 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg 273 (641)
..+...|.+.+++ .|++|+.++.|++|..++++ ++.++.+ .+|+ .+.|++||+|+..
T Consensus 308 ~~l~~~l~~~l~~-~G~~I~l~~~V~~I~~~~~g---~v~~v~~---~~G~--~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQS-LGGEVRLNSRIKKIELNDDG---TVKHFLL---TNGS--VVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHh-cCCEEEeCCeeeEEEECCCC---cEEEEEE---CCCc--EEECCEEEECCCH
Confidence 5677888888877 49999999999999886565 6666655 3464 5899999999863
No 248
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.23 E-value=1.3e-05 Score=86.89 Aligned_cols=32 Identities=34% Similarity=0.661 Sum_probs=29.6
Q ss_pred cEEEECccHHHHHHHHHHHhcC--CeEEEEecCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAEP 115 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~ 115 (641)
.|+|||||++||++|+.|++.| +|+|+||.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 6999999999999999999986 8999999764
No 249
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=98.22 E-value=1.4e-05 Score=87.10 Aligned_cols=62 Identities=18% Similarity=0.299 Sum_probs=47.0
Q ss_pred HHHHHHHHc-CCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEc-CEEEEcCCCCCc
Q 006532 212 RALLEAVVS-DPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAGH 276 (641)
Q Consensus 212 ~~l~~~~~~-~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGg~~~ 276 (641)
+++.+.+.. +.++.+..++.|+.++.|..+ ++..|+.... +.|+.++++| |-|||+.|+++.
T Consensus 256 ~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~--~~a~gv~~~~-~~~~~~~v~a~kEVILSAGAi~S 319 (623)
T KOG1238|consen 256 KAYLKPIRLTRPNLHISRNAAVTRVLIDPAG--KRAKGVEFVR-DGGKEHTVKARKEVILSAGAINS 319 (623)
T ss_pred hhhhhhhhccCccccccccceEEEEEEcCCC--ceEEEEEEEe-cCceeeeecccceEEEeccccCC
Confidence 344444444 468889999999999998666 4788888763 3378888888 789999998874
No 250
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.21 E-value=2.5e-05 Score=87.04 Aligned_cols=66 Identities=18% Similarity=0.134 Sum_probs=56.1
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 206 ~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
....++..+.+.+.+ .|++|+++++|+++..+ ++ ++.|+.+.+..+|+...|+|+.||+|||.++.
T Consensus 126 dp~~l~~al~~~A~~-~Ga~i~~~t~V~~i~~~-~~---~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 126 DPFRLVAANVLDAQE-HGARIFTYTKVTGLIRE-GG---RVTGVKVEDHKTGEEERIEAQVVINAAGIWAG 191 (516)
T ss_pred CHHHHHHHHHHHHHH-cCCEEEcCcEEEEEEEE-CC---EEEEEEEEEcCCCcEEEEEcCEEEECCCcchH
Confidence 367788888888887 49999999999999876 44 68899888777787778999999999998875
No 251
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.20 E-value=1.9e-05 Score=85.32 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=37.3
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTN 121 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~ 121 (641)
.+|||+|||+|.+|+.+|..|++.| +|+++|+....||...
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA 44 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence 4699999999999999999999999 9999999998877543
No 252
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.19 E-value=1.2e-05 Score=85.81 Aligned_cols=33 Identities=33% Similarity=0.547 Sum_probs=30.0
Q ss_pred cEEEECccHHHHHHHHHH--HhcC-CeEEEEecCCC
Q 006532 84 DFSVIGSGVAGLCYALEV--AKHG-TVAVITKAEPH 116 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~a--a~~G-~V~llek~~~~ 116 (641)
||+|||||+||+++|+.| ++.| +|+|||+....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 899999999999999999 7778 99999987643
No 253
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.17 E-value=1.3e-05 Score=87.39 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCC
Q 006532 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYP 279 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~ 279 (641)
...+-..|.+.+.+. ||++++++ |+++..+++| .|.+|.. .+|+ +|+||.||-|||-.+.+-.
T Consensus 153 R~~fd~~L~~~A~~~-Gv~~~~g~-V~~v~~~~~g---~i~~v~~---~~g~--~i~ad~~IDASG~~s~L~~ 215 (454)
T PF04820_consen 153 RAKFDQFLRRHAEER-GVEVIEGT-VVDVELDEDG---RITAVRL---DDGR--TIEADFFIDASGRRSLLAR 215 (454)
T ss_dssp HHHHHHHHHHHHHHT-T-EEEET--EEEEEE-TTS---EEEEEEE---TTSE--EEEESEEEE-SGGG-CCCC
T ss_pred HHHHHHHHHHHHhcC-CCEEEeCE-EEEEEEcCCC---CEEEEEE---CCCC--EEEEeEEEECCCccchhhH
Confidence 356777888888884 99999985 7777777666 7777765 3454 6999999999997664433
No 254
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.16 E-value=2.1e-05 Score=85.45 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=34.7
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-C-eEEEEecCCCCC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAEPHES 118 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~-V~llek~~~~~g 118 (641)
...+||+|||||++|+++|+.|.+.| . ++|+||....+|
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg 46 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGG 46 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCC
Confidence 45689999999999999999999999 6 999999975544
No 255
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.15 E-value=2.2e-06 Score=66.92 Aligned_cols=35 Identities=34% Similarity=0.564 Sum_probs=31.1
Q ss_pred EECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccc
Q 006532 87 VIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTN 121 (641)
Q Consensus 87 VIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~ 121 (641)
|||||++||+||+.|++.| +|+|+||....+|...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRAR 36 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGC
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCccee
Confidence 8999999999999999999 9999999998876553
No 256
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.11 E-value=1.7e-05 Score=81.79 Aligned_cols=37 Identities=27% Similarity=0.522 Sum_probs=33.4
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCc
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 119 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~ 119 (641)
-+|+|||||++||++|+.+.++| +|+|+|+...+.+.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~ 40 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE 40 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC
Confidence 48999999999999999999999 99999997766554
No 257
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.11 E-value=8.4e-05 Score=81.74 Aligned_cols=65 Identities=11% Similarity=0.066 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC--CCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCC
Q 006532 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTL--DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA 274 (641)
Q Consensus 206 ~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~--~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~ 274 (641)
.+..+...|.+.+++ .|++|+.++.|++|..++ ++ ..++.|+.+.+. ++ ...+.||+||+|+...
T Consensus 217 ~~~~l~~pl~~~L~~-~Gg~i~~~~~V~~I~~~~~~~~-~~~v~~v~~~~g-~~-~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 217 PDKYLTKPILEYIEA-RGGKFHLRHKVREIKYEKSSDG-STRVTGLIMSKP-EG-KKVIKADAYVAACDVP 283 (474)
T ss_pred cchhHHHHHHHHHHH-CCCEEECCCEEEEEEEecCCCC-ceeEEEEEEecC-Cc-ceEEECCEEEECCChH
Confidence 344566778888888 599999999999998753 22 013677766321 11 1258899999999954
No 258
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.10 E-value=1.1e-05 Score=78.72 Aligned_cols=170 Identities=12% Similarity=0.096 Sum_probs=97.3
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-------CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCH
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-------TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDD 154 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-------~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~ 154 (641)
...|+|||||+.|.++|+.|++++ .|+|+|+..+.+|+|..++|...-+-. +
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~---------------------~ 68 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQ---------------------P 68 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhC---------------------C
Confidence 368999999999999999999864 589999999999988887664432211 1
Q ss_pred HHHHHHHHHhHHH-------HHHHHHcCCc--------cccCCCCCcccccCCC--------cccccee---eccCCcHH
Q 006532 155 ETVRVVCTEGPDR-------IRELIAIGAS--------FDRGEDGNLHLAREGG--------HSHHRIV---HAADMTGR 208 (641)
Q Consensus 155 ~~~~~~~~~~~~~-------i~~l~~~Gv~--------~~~~~~g~~~~~~~gg--------~~~~r~~---~~~~~~g~ 208 (641)
+.+..++..+... ++-..+||.. .+.+ +-......+|- ....++. .......+
T Consensus 69 s~~~~La~lsfkLh~~LsdeydGvnnwgYRaltTws~ka~~e-n~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~ 147 (380)
T KOG2852|consen 69 SIIQPLATLSFKLHEELSDEYDGVNNWGYRALTTWSCKADWE-NTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPY 147 (380)
T ss_pred cccchhhHHHHHHHHHHHHhhcCcccccceeeeEEEEEeecc-cCCcccCCcchhhhhhHHhhhheeccCCCccceeCHH
Confidence 1111111111111 1111223321 1100 00000000110 0001100 01122457
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCC
Q 006532 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYP 279 (641)
Q Consensus 209 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~ 279 (641)
.+.+.++..+++..||+++.+ .|.++-. +.+ ++.++.... ..+..+...+..||+|.|.|...+.
T Consensus 148 lFc~~i~sea~k~~~V~lv~G-kv~ev~d-Ek~---r~n~v~~ae-~~~ti~~~d~~~ivvsaGPWTskll 212 (380)
T KOG2852|consen 148 LFCHFILSEAEKRGGVKLVFG-KVKEVSD-EKH---RINSVPKAE-AEDTIIKADVHKIVVSAGPWTSKLL 212 (380)
T ss_pred HHHHHHHHHHHhhcCeEEEEe-eeEEeec-ccc---cccccchhh-hcCceEEeeeeEEEEecCCCchhhc
Confidence 788999999999878999999 5677753 344 666654432 1233446678999999999986543
No 259
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.10 E-value=1.8e-05 Score=73.13 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=26.5
Q ss_pred EEECccHHHHHHHHHHHhc-----C-CeEEEEecCC
Q 006532 86 SVIGSGVAGLCYALEVAKH-----G-TVAVITKAEP 115 (641)
Q Consensus 86 lVIGgG~AGl~AA~~aa~~-----G-~V~llek~~~ 115 (641)
+|||+|++|++++..|.+. . +|+|+|+...
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 5999999999999999876 3 7999999766
No 260
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.06 E-value=2.7e-05 Score=82.78 Aligned_cols=39 Identities=26% Similarity=0.447 Sum_probs=33.6
Q ss_pred cEEEECccHHHHHHHHHHHhc--C-CeEEEEecCCCCCcccc
Q 006532 84 DFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNTNY 122 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~--G-~V~llek~~~~~g~s~~ 122 (641)
||+|||||+||+++|+.|++. | +|+|+|+.+..+++..|
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw 42 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTW 42 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccc
Confidence 899999999999999999987 8 99999998765554333
No 261
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.97 E-value=1.2e-05 Score=83.74 Aligned_cols=39 Identities=36% Similarity=0.427 Sum_probs=35.6
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 118 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g 118 (641)
+..-++||||||+||+.||+.|++.| +|.||||.+..||
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGG 161 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGG 161 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence 44568999999999999999999999 9999999998765
No 262
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.92 E-value=3.3e-05 Score=82.92 Aligned_cols=37 Identities=35% Similarity=0.509 Sum_probs=33.7
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 118 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g 118 (641)
.-+|+|||+|+|||++|..|.+.| .|+++||....+|
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGG 43 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGG 43 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccc
Confidence 459999999999999999999999 9999999987543
No 263
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.88 E-value=6.7e-05 Score=87.31 Aligned_cols=32 Identities=34% Similarity=0.575 Sum_probs=30.0
Q ss_pred cEEEECccHHHHHHHHHHHhc--C-CeEEEEecCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEP 115 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~--G-~V~llek~~~ 115 (641)
+|+|||||+|||+||+.|++. | +|+|+||...
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 699999999999999999998 8 9999999874
No 264
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.86 E-value=9.8e-05 Score=81.27 Aligned_cols=48 Identities=17% Similarity=0.108 Sum_probs=34.7
Q ss_pred ceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHH
Q 006532 432 GVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSID 484 (641)
Q Consensus 432 GI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~ 484 (641)
||.||..+||++|.+||+|||+ -..|.++ | -.+.++-.++.++.++..
T Consensus 258 GIvvnd~mqTsdpdIYAvGEca--e~~g~~y--G-LVaP~yeq~~v~a~hl~~ 305 (793)
T COG1251 258 GIVVNDYMQTSDPDIYAVGECA--EHRGKVY--G-LVAPLYEQAKVLADHLCG 305 (793)
T ss_pred CeeecccccccCCCeeehhhHH--HhcCccc--e-ehhHHHHHHHHHHHHhcc
Confidence 8999999999999999999998 2333221 1 245666667777766643
No 265
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.85 E-value=0.00016 Score=80.09 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=30.3
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 118 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g 118 (641)
.|+|||||++||+||..|.+.| +|+++||....||
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG 38 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGG 38 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSG
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCc
Confidence 5999999999999999999999 9999999987654
No 266
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.85 E-value=0.00019 Score=82.78 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=31.3
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
....|+|||||||||+||+.|++.| +|+|+|+..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 4578999999999999999999999 999999864
No 267
>PLN02487 zeta-carotene desaturase
Probab=97.84 E-value=0.00034 Score=77.97 Aligned_cols=73 Identities=5% Similarity=-0.014 Sum_probs=51.1
Q ss_pred eeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCC-CceEEEEEEEecCCCeEEEEEcCEEEEcCCCC
Q 006532 199 IVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGP-DAVCHGVDTLNVETQEVVRFISKVTLLASGGA 274 (641)
Q Consensus 199 ~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~-~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~ 274 (641)
..++....+..+...+.+.++++ |++|+.++.|.+|..+.++. ..++.|+.+.+ .++...+.||+||+|++..
T Consensus 286 l~~~~Gg~~~~l~~pl~~~L~~~-Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~--~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 286 LRMLKGSPDVRLSGPIAKYITDR-GGRFHLRWGCREILYDKSPDGETYVTGLKVSK--ATEKEIVKADAYVAACDVP 359 (569)
T ss_pred eeecCCCchHHHHHHHHHHHHHc-CCEEEeCCceEEEEEecCCCCceeEEEEEEec--CCCceEEECCEEEECCCHH
Confidence 33434445556888899999884 99999999999999863211 11477887631 2333358899999999954
No 268
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.82 E-value=0.00025 Score=57.38 Aligned_cols=32 Identities=31% Similarity=0.509 Sum_probs=29.8
Q ss_pred EEEECccHHHHHHHHHHHhcC-CeEEEEecCCC
Q 006532 85 FSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 116 (641)
Q Consensus 85 VlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~ 116 (641)
|+|||||..|+-.|..+++.| +|+|+++.+..
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 799999999999999999999 99999998753
No 269
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.77 E-value=0.00062 Score=72.95 Aligned_cols=35 Identities=29% Similarity=0.534 Sum_probs=31.8
Q ss_pred cEEEECccHHHHHHHHHHHhcC---CeEEEEecCCCCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHES 118 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G---~V~llek~~~~~g 118 (641)
.|+|||||+|||+||++|.+++ .|+|+|++...||
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG 39 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG 39 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCc
Confidence 4899999999999999999998 7999999877665
No 270
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.74 E-value=9.7e-05 Score=76.57 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCC
Q 006532 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 209 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
.+..++.+.+++ .|.+|++...|.+|+.| +| +++||.+. +|. .+++|.||--++-+-
T Consensus 265 avs~aia~~~~~-~GaeI~tka~Vq~Illd-~g---ka~GV~L~---dG~--ev~sk~VvSNAt~~~ 321 (561)
T KOG4254|consen 265 AVSFAIAEGAKR-AGAEIFTKATVQSILLD-SG---KAVGVRLA---DGT--EVRSKIVVSNATPWD 321 (561)
T ss_pred HHHHHHHHHHHh-ccceeeehhhhhheecc-CC---eEEEEEec---CCc--EEEeeeeecCCchHH
Confidence 466778888877 59999999999999998 57 89999885 565 578888887777543
No 271
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.71 E-value=3.5e-05 Score=81.33 Aligned_cols=39 Identities=28% Similarity=0.503 Sum_probs=35.2
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccc
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTN 121 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~ 121 (641)
+||+|||||+||+++|..|++.| +|+|+|+....+|.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~ 41 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCY 41 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcee
Confidence 69999999999999999999999 9999999887776543
No 272
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.67 E-value=0.00084 Score=71.86 Aligned_cols=61 Identities=16% Similarity=0.098 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCC
Q 006532 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIY 278 (641)
Q Consensus 206 ~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~ 278 (641)
....++..|.+.+.+ |++++++++|+++..+ ++ . .++. +.+|+ .+.|+.||+|+|.++...
T Consensus 133 dp~~~~~~l~~~~~~--G~~i~~~~~V~~i~~~-~~---~-~~v~---t~~g~--~~~a~~vV~a~G~~~~~l 193 (381)
T TIGR03197 133 SPPQLCRALLAHAGI--RLTLHFNTEITSLERD-GE---G-WQLL---DANGE--VIAASVVVLANGAQAGQL 193 (381)
T ss_pred ChHHHHHHHHhccCC--CcEEEeCCEEEEEEEc-CC---e-EEEE---eCCCC--EEEcCEEEEcCCcccccc
Confidence 456788888888765 9999999999999875 33 2 2232 23453 479999999999887543
No 273
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.62 E-value=0.00057 Score=75.35 Aligned_cols=33 Identities=33% Similarity=0.565 Sum_probs=30.3
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
-.|+|||||.+|+-+|..+++.| +|+|+++.+.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 48999999999999999999999 9999998753
No 274
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.62 E-value=0.00051 Score=71.96 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=48.9
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCC
Q 006532 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIY 278 (641)
Q Consensus 206 ~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~ 278 (641)
....+...|.+.+.+ .|++++++++|++|..+ ++ .+.+|.. .+| .++|+.||+|+|.+...+
T Consensus 135 ~p~~l~~~l~~~~~~-~g~~~~~~~~v~~i~~~-~~---~~~~v~~---~~g---~~~a~~vV~a~G~~~~~l 196 (337)
T TIGR02352 135 DPRALLKALEKALEK-LGVEIIEHTEVQHIEIR-GE---KVTAIVT---PSG---DVQADQVVLAAGAWAGEL 196 (337)
T ss_pred ChHHHHHHHHHHHHH-cCCEEEccceEEEEEee-CC---EEEEEEc---CCC---EEECCEEEEcCChhhhhc
Confidence 356788899999888 49999999999999875 44 5666643 344 589999999999887643
No 275
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.61 E-value=6.3e-05 Score=82.27 Aligned_cols=41 Identities=29% Similarity=0.364 Sum_probs=36.4
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s 120 (641)
....+|+|||||+|||+||..|.+.| +|+|+|.....||..
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI 54 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRI 54 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCcee
Confidence 34679999999999999999999999 999999988777643
No 276
>PRK07233 hypothetical protein; Provisional
Probab=97.57 E-value=7.7e-05 Score=81.23 Aligned_cols=37 Identities=30% Similarity=0.537 Sum_probs=34.2
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s 120 (641)
+|+|||||++||+||+.|+++| +|+|+|+....||..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCce
Confidence 5899999999999999999999 999999999887754
No 277
>PLN02576 protoporphyrinogen oxidase
Probab=97.55 E-value=8e-05 Score=82.72 Aligned_cols=40 Identities=33% Similarity=0.467 Sum_probs=35.9
Q ss_pred ccccEEEECccHHHHHHHHHHHhc-C-CeEEEEecCCCCCcc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKH-G-TVAVITKAEPHESNT 120 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~-G-~V~llek~~~~~g~s 120 (641)
..+||+|||||++||+||+.|++. | +|+|+|+....||..
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~ 52 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNI 52 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCce
Confidence 357999999999999999999999 9 999999998777643
No 278
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.52 E-value=0.0012 Score=69.17 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=27.1
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEecCC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEP 115 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~ 115 (641)
.+|+|+||.||++|+-|+.|.+.+ +++.+||.+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 489999999999999999998876 9999998763
No 279
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.51 E-value=0.0016 Score=68.31 Aligned_cols=140 Identities=16% Similarity=0.166 Sum_probs=75.9
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC---CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 157 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G---~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~ 157 (641)
....|+|||||.++.-.+..|.+.+ +|.++-|+....- .++++ ....+.+|+.+
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~--------------~d~s~---------f~ne~f~P~~v 245 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFP--------------MDDSP---------FVNEIFSPEYV 245 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB------------------C---------CHHGGGSHHHH
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCC--------------Ccccc---------chhhhcCchhh
Confidence 4578999999999999999999876 6888988653110 00110 01123556666
Q ss_pred HHHHHHhHHHHHHHH-HcC-CccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHH-----HHHcCCCcEEEcce
Q 006532 158 RVVCTEGPDRIRELI-AIG-ASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLE-----AVVSDPNISVFEHH 230 (641)
Q Consensus 158 ~~~~~~~~~~i~~l~-~~G-v~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~-----~~~~~~gv~i~~~~ 230 (641)
+.+.....+.-..+. +.. ... +.....++..|++ .+.....++++.++
T Consensus 246 ~~f~~l~~~~R~~~l~~~~~~ny-------------------------~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~ 300 (341)
T PF13434_consen 246 DYFYSLPDEERRELLREQRHTNY-------------------------GGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNT 300 (341)
T ss_dssp HHHHTS-HHHHHHHHHHTGGGTS-------------------------SEB-HHHHHHHHHHHHHHHHHT---SEEETTE
T ss_pred hhhhcCCHHHHHHHHHHhHhhcC-------------------------CCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCC
Confidence 665554443333322 210 000 0011223333322 33333579999999
Q ss_pred EEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCC
Q 006532 231 FAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASG 272 (641)
Q Consensus 231 ~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 272 (641)
+|+++..+++| .+ -+.+.+..+++...+.+|.||+|||
T Consensus 301 ~v~~~~~~~~~---~~-~l~~~~~~~~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 301 EVTSAEQDGDG---GV-RLTLRHRQTGEEETLEVDAVILATG 338 (341)
T ss_dssp EEEEEEEES-S---SE-EEEEEETTT--EEEEEESEEEE---
T ss_pred EEEEEEECCCC---EE-EEEEEECCCCCeEEEecCEEEEcCC
Confidence 99999887654 33 3566777788888999999999999
No 280
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.51 E-value=0.00011 Score=73.16 Aligned_cols=40 Identities=28% Similarity=0.478 Sum_probs=37.2
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcccc
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNY 122 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~ 122 (641)
+|.+|||+|.+|+..|..|++.| +|+||||.+..||+..-
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYd 42 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYD 42 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcccc
Confidence 79999999999999999999999 99999999998888754
No 281
>PLN02268 probable polyamine oxidase
Probab=97.48 E-value=0.00011 Score=80.22 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=34.9
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s 120 (641)
.+|+|||||+|||+||+.|.+.| +|+|+|+....||..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri 39 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRV 39 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCcee
Confidence 37999999999999999999999 999999999888755
No 282
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.46 E-value=0.0061 Score=65.20 Aligned_cols=74 Identities=11% Similarity=0.160 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEE--c-CEEEEcCCCCCc--CCCCCC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFI--S-KVTLLASGGAGH--IYPSTT 282 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~--A-k~VVlAtGg~~~--~~~~~~ 282 (641)
.+++..|.+-++++ ||++.+++.|++|..+.++..+++.++... .+|+...|. . |.|++..|+... .|..++
T Consensus 207 eSii~Pl~~~L~~~-GV~F~~~t~V~di~~~~~~~~~~~~~i~~~--~~g~~~~i~l~~~DlV~vT~GS~t~~s~~G~~~ 283 (500)
T PF06100_consen 207 ESIILPLIRYLKSQ-GVDFRFNTKVTDIDFDITGDKKTATRIHIE--QDGKEETIDLGPDDLVFVTNGSMTEGSTYGDND 283 (500)
T ss_pred HHHHHHHHHHHHHC-CCEEECCCEEEEEEEEccCCCeeEEEEEEE--cCCCeeEEEeCCCCEEEEECCccccccccCCCC
Confidence 56888899999885 999999999999998754434466666665 345554443 3 677777776543 344444
Q ss_pred Cc
Q 006532 283 NP 284 (641)
Q Consensus 283 ~~ 284 (641)
.|
T Consensus 284 ~p 285 (500)
T PF06100_consen 284 TP 285 (500)
T ss_pred CC
Confidence 33
No 283
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.43 E-value=0.00013 Score=80.23 Aligned_cols=38 Identities=21% Similarity=0.456 Sum_probs=34.7
Q ss_pred ccEEEECccHHHHHHHHHHHhc----C-CeEEEEecCCCCCcc
Q 006532 83 FDFSVIGSGVAGLCYALEVAKH----G-TVAVITKAEPHESNT 120 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~----G-~V~llek~~~~~g~s 120 (641)
.||+|||||+|||+||+.|+++ | +|+|+|+....||..
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~ 45 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKI 45 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceE
Confidence 5899999999999999999998 9 999999998777644
No 284
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.43 E-value=0.0014 Score=72.07 Aligned_cols=32 Identities=34% Similarity=0.509 Sum_probs=30.0
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-+|+|||||.+|+.+|..+++.| +|+|+++.+
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 203 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD 203 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 47999999999999999999999 999999875
No 285
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.43 E-value=0.0017 Score=72.40 Aligned_cols=50 Identities=10% Similarity=0.173 Sum_probs=39.2
Q ss_pred CCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCC
Q 006532 222 PNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 222 ~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
.||+++.++.++++..+ ++ ++.++.+.+..+++...+.++.||+|+|-.+
T Consensus 401 ~gV~i~~~~~v~~i~~~-~~---~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P 450 (515)
T TIGR03140 401 PNVDILTSAQTTEIVGD-GD---KVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP 450 (515)
T ss_pred CCCEEEECCeeEEEEcC-CC---EEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence 49999999999998754 34 6778877665556666899999999998544
No 286
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.42 E-value=0.0014 Score=73.05 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=40.0
Q ss_pred CCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCC
Q 006532 222 PNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA 274 (641)
Q Consensus 222 ~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~ 274 (641)
.||+++.++.++++..+ ++ ++.++.+.+..+|+..++.++.|++|+|-.
T Consensus 400 ~gI~i~~~~~v~~i~~~-~g---~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~ 448 (517)
T PRK15317 400 PNVTIITNAQTTEVTGD-GD---KVTGLTYKDRTTGEEHHLELEGVFVQIGLV 448 (517)
T ss_pred CCcEEEECcEEEEEEcC-CC---cEEEEEEEECCCCcEEEEEcCEEEEeECCc
Confidence 59999999999999754 34 688888877666777789999999998843
No 287
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.42 E-value=0.0016 Score=71.59 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=29.9
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
-.|+|||||..|+-.|..+++.| +|+|+++.+.
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 206 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPR 206 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 37999999999999999999999 9999998653
No 288
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.41 E-value=0.00033 Score=76.24 Aligned_cols=53 Identities=21% Similarity=0.178 Sum_probs=34.2
Q ss_pred cCceEeCCCCCcccCCeeecccccCCCC---CCCCccchhhhHHHHHHHHHHHHHHHH
Q 006532 430 CGGVRAGLQGETNVRGLYVAGEVACTGL---HGANRLASNSLLEALVFARRAVQPSID 484 (641)
Q Consensus 430 ~GGI~vD~~~~T~ipGLyAaGe~a~~g~---~Ga~rl~g~sl~~a~v~G~~Ag~~aa~ 484 (641)
.|+|.||++++|++|++||+|||+ +.. .|...... ....|.-.|+.|+++++.
T Consensus 248 ~G~i~vd~~~~t~~~~Vya~GD~~-~~~~~~~~~~~~~~-~~~~A~~~g~~~a~ni~g 303 (427)
T TIGR03385 248 TGAIWVNEKFQTSVPNIYAAGDVA-ESHNIITKKPAWVP-LAWGANKMGRIAGENIAG 303 (427)
T ss_pred CCCEEECCCcEeCCCCEEEeeeeE-EeeeccCCCceeee-chHHHHHHHHHHHHHhcC
Confidence 478999999999999999999997 221 11111001 112355567777776643
No 289
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.41 E-value=0.0019 Score=70.99 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=29.5
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-+|+|||||.+|+-+|..+++.| +|+|+++.+
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 203 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP 203 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 37999999999999999999999 999999865
No 290
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.39 E-value=0.0021 Score=70.67 Aligned_cols=32 Identities=31% Similarity=0.423 Sum_probs=29.4
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-.|..+++.| +|+|+|+.+
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~ 207 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD 207 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 47999999999999999999999 999999865
No 291
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.37 E-value=0.0018 Score=70.81 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=29.5
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-+|..+.+.| +|+|+++..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 47999999999999999999999 999998764
No 292
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34 E-value=0.0036 Score=66.45 Aligned_cols=40 Identities=20% Similarity=0.449 Sum_probs=33.1
Q ss_pred ccEEEECccHHHHHHHHHHHhcC----CeEEEEecCCCCCcccc
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG----TVAVITKAEPHESNTNY 122 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G----~V~llek~~~~~g~s~~ 122 (641)
++|+|||||++|++.|.+|.+.- .|.|+|+....|++..+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaY 45 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAY 45 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccC
Confidence 68999999999999999998753 59999998876654444
No 293
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.34 E-value=0.002 Score=70.84 Aligned_cols=32 Identities=28% Similarity=0.547 Sum_probs=29.8
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||+|..|+-+|..+++.| +|+|+++.+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 199 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSD 199 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 47999999999999999999999 999999865
No 294
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.33 E-value=0.0029 Score=69.68 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=29.3
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-+|..+++.| +|+|+++.+
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~ 205 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD 205 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 37999999999999999999999 999999754
No 295
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.33 E-value=0.00021 Score=78.31 Aligned_cols=37 Identities=22% Similarity=0.518 Sum_probs=33.0
Q ss_pred cEEEECccHHHHHHHHHHHhcC---CeEEEEecCCCCCcc
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHESNT 120 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G---~V~llek~~~~~g~s 120 (641)
+|+|||||+|||+||+.|++.| +|+|+|+....||..
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~ 41 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKI 41 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceE
Confidence 6999999999999999999966 799999998877643
No 296
>PRK06370 mercuric reductase; Validated
Probab=97.32 E-value=0.0022 Score=70.56 Aligned_cols=33 Identities=30% Similarity=0.501 Sum_probs=30.2
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
-.|+|||||..|+-+|..+++.| +|+|+++.+.
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 205 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR 205 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 47999999999999999999999 9999998653
No 297
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.31 E-value=0.0021 Score=65.99 Aligned_cols=48 Identities=21% Similarity=0.235 Sum_probs=37.3
Q ss_pred CCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCC
Q 006532 222 PNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA 274 (641)
Q Consensus 222 ~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~ 274 (641)
.||+++.++.++++..+ + ++.++.+.+..+|+...+.++.||+|+|-.
T Consensus 190 ~gv~~~~~~~v~~i~~~--~---~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 237 (300)
T TIGR01292 190 PNIEFLWNSTVKEIVGD--N---KVEGVKIKNTVTGEEEELKVDGVFIAIGHE 237 (300)
T ss_pred CCeEEEeccEEEEEEcc--C---cEEEEEEEecCCCceEEEEccEEEEeeCCC
Confidence 39999999999998743 2 466676665556766789999999999944
No 298
>PRK12831 putative oxidoreductase; Provisional
Probab=97.31 E-value=0.0022 Score=70.42 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=29.2
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-+|..|.+.| +|+|+.+..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 48999999999999999999999 999998754
No 299
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.00025 Score=75.71 Aligned_cols=37 Identities=27% Similarity=0.464 Sum_probs=34.1
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s 120 (641)
.|+|+|||+|||+||+.|+++| +|+|+|.+...||..
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~ 39 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKV 39 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCcee
Confidence 5999999999999999999999 999999999887643
No 300
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.27 E-value=0.0007 Score=67.17 Aligned_cols=37 Identities=32% Similarity=0.555 Sum_probs=32.2
Q ss_pred cccccEEEECccHHHHHHHHHHHhc--C-CeEEEEecCCC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPH 116 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~--G-~V~llek~~~~ 116 (641)
...||.+|||||+.|++.|.++.-+ + +|+|+||....
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l 85 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL 85 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence 4579999999999999999999765 6 99999997643
No 301
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.26 E-value=0.00034 Score=73.48 Aligned_cols=43 Identities=28% Similarity=0.421 Sum_probs=38.2
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcccc
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNY 122 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~ 122 (641)
...+||+|||+|.+||.||+.|.+.| +|+|+|..+..+|.+..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t 48 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLT 48 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEE
Confidence 45689999999999999999999999 99999998887776543
No 302
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.22 E-value=0.0031 Score=67.36 Aligned_cols=32 Identities=25% Similarity=0.521 Sum_probs=29.6
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-+|+|||||..|+-+|..|++.| +|+|+++.+
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~ 174 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA 174 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence 47999999999999999999999 999999865
No 303
>PRK06116 glutathione reductase; Validated
Probab=97.19 E-value=0.0039 Score=68.32 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=29.5
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||+|..|+-.|..+++.| +|+++++++
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~ 200 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD 200 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 47999999999999999999999 999999865
No 304
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.16 E-value=0.0054 Score=67.71 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=29.6
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||+|..|+-+|..+++.| +|+|+++.+
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 216 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALP 216 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 37999999999999999999999 999999865
No 305
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.16 E-value=0.0045 Score=67.55 Aligned_cols=32 Identities=34% Similarity=0.488 Sum_probs=29.7
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
.|+|||||.+|+.+|..+++.| +|+|+++.+.
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 191 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAST 191 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 6999999999999999999999 9999998753
No 306
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.15 E-value=0.00054 Score=74.87 Aligned_cols=37 Identities=30% Similarity=0.407 Sum_probs=33.2
Q ss_pred cccEEEECccHHHHHHHHHHHh--cC-CeEEEEecCCCCC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAK--HG-TVAVITKAEPHES 118 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~--~G-~V~llek~~~~~g 118 (641)
..+|+||||||||+.||..|++ .| +|+|+|+.+.++|
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG 65 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG 65 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc
Confidence 4689999999999999999987 68 9999999987655
No 307
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.14 E-value=0.00042 Score=76.30 Aligned_cols=37 Identities=24% Similarity=0.382 Sum_probs=32.8
Q ss_pred cEEEECccHHHHHHHHHHHhc------C-CeEEEEecCCCCCcc
Q 006532 84 DFSVIGSGVAGLCYALEVAKH------G-TVAVITKAEPHESNT 120 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~------G-~V~llek~~~~~g~s 120 (641)
+|+|||||++||+||+.|++. | +|+|+|+....||..
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~ 46 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKI 46 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceE
Confidence 699999999999999999985 5 899999998877754
No 308
>PRK10262 thioredoxin reductase; Provisional
Probab=97.14 E-value=0.0051 Score=64.14 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=69.6
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHHH
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~ 161 (641)
-.|+|||+|..|+-.|..+++.+ +|+++++...... ++
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~----------------------------------~~------- 185 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA----------------------------------EK------- 185 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCC----------------------------------CH-------
Confidence 47999999999999999999999 9999998652100 00
Q ss_pred HHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
.+...+.+.+++ .||+++.++.++++..+ ++
T Consensus 186 -----------------------------------------------~~~~~~~~~l~~-~gV~i~~~~~v~~v~~~-~~ 216 (321)
T PRK10262 186 -----------------------------------------------ILIKRLMDKVEN-GNIILHTNRTLEEVTGD-QM 216 (321)
T ss_pred -----------------------------------------------HHHHHHHhhccC-CCeEEEeCCEEEEEEcC-Cc
Confidence 011223344445 59999999999998754 33
Q ss_pred CCceEEEEEEEecC-CCeEEEEEcCEEEEcCCC
Q 006532 242 PDAVCHGVDTLNVE-TQEVVRFISKVTLLASGG 273 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~-~g~~~~i~Ak~VVlAtGg 273 (641)
.+.++.+.+.. +++...+.++.||+|+|-
T Consensus 217 ---~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~ 246 (321)
T PRK10262 217 ---GVTGVRLRDTQNSDNIESLDVAGLFVAIGH 246 (321)
T ss_pred ---cEEEEEEEEcCCCCeEEEEECCEEEEEeCC
Confidence 46677765432 234457999999999984
No 309
>PLN02676 polyamine oxidase
Probab=97.11 E-value=0.00054 Score=75.56 Aligned_cols=40 Identities=13% Similarity=0.333 Sum_probs=35.7
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-C-eEEEEecCCCCCcc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAEPHESNT 120 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~-V~llek~~~~~g~s 120 (641)
..+||+|||||++||+||+.|++.| + |+|+|+....||..
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~ 66 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRM 66 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcc
Confidence 4679999999999999999999999 5 99999998777644
No 310
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.10 E-value=0.0047 Score=66.47 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=30.0
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
-.|+|||+|..|+-+|..|++.| +|+|+++...
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 178 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAAT 178 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 36999999999999999999999 9999998653
No 311
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.06 E-value=0.00056 Score=73.00 Aligned_cols=33 Identities=30% Similarity=0.376 Sum_probs=30.8
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
+||+|||||.+|+.||+.|++.| +|+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 48999999999999999999999 9999998764
No 312
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.05 E-value=0.0058 Score=67.22 Aligned_cols=32 Identities=31% Similarity=0.456 Sum_probs=29.7
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-.|..+++.| +|+|+++.+
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~ 208 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRD 208 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 47999999999999999999999 999999865
No 313
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.03 E-value=0.00086 Score=68.80 Aligned_cols=55 Identities=27% Similarity=0.384 Sum_probs=40.7
Q ss_pred cccCceEeCCCCCcccCCeeecccccC--CCCCCCCccchhhhHHHHHHHHHHHHHHHHh
Q 006532 428 YMCGGVRAGLQGETNVRGLYVAGEVAC--TGLHGANRLASNSLLEALVFARRAVQPSIDH 485 (641)
Q Consensus 428 ~~~GGI~vD~~~~T~ipGLyAaGe~a~--~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~ 485 (641)
...||++||...+. -.+||+|||++| -++.|+-|.-. .-.|+|+||+||+++...
T Consensus 463 ~~lGGfrvnaeL~a-r~NvwvAGdaacF~D~~LGrRRVeh--hdhavvSGRLAGENMtgA 519 (659)
T KOG1346|consen 463 EKLGGFRVNAELKA-RENVWVAGDAACFEDGVLGRRRVEH--HDHAVVSGRLAGENMTGA 519 (659)
T ss_pred cccCcEEeeheeec-ccceeeecchhhhhcccccceeccc--cccceeeceecccccccc
Confidence 34577777776543 468999999986 46677777653 456899999999987654
No 314
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.02 E-value=0.0073 Score=66.14 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=29.7
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-.|..+++.| +|+|+++.+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 199 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE 199 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 37999999999999999999999 999999875
No 315
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.97 E-value=0.00093 Score=76.77 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=35.5
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 119 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~ 119 (641)
...+|+|||||++||+||+.|++.| +|+|+|+....||.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR 276 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCc
Confidence 4589999999999999999999999 99999998877664
No 316
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.95 E-value=0.0075 Score=65.31 Aligned_cols=98 Identities=19% Similarity=0.192 Sum_probs=70.6
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHHH
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~ 161 (641)
-.++|||||..|+--|-..++.| +|+|||+.+..-. ..|
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp--------------------------------~~D-------- 213 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP--------------------------------GED-------- 213 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC--------------------------------cCC--------
Confidence 46999999999999999999999 9999999764210 011
Q ss_pred HHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
..+.+.+.+.+++ .|+++++++.++.+..+ ++
T Consensus 214 ----------------------------------------------~ei~~~~~~~l~~-~gv~i~~~~~v~~~~~~-~~ 245 (454)
T COG1249 214 ----------------------------------------------PEISKELTKQLEK-GGVKILLNTKVTAVEKK-DD 245 (454)
T ss_pred ----------------------------------------------HHHHHHHHHHHHh-CCeEEEccceEEEEEec-CC
Confidence 1234455566666 59999999999998765 33
Q ss_pred CCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCC
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
. .-+... +|+...+.|+.|++|+|-.+
T Consensus 246 ---~-v~v~~~---~g~~~~~~ad~vLvAiGR~P 272 (454)
T COG1249 246 ---G-VLVTLE---DGEGGTIEADAVLVAIGRKP 272 (454)
T ss_pred ---e-EEEEEe---cCCCCEEEeeEEEEccCCcc
Confidence 2 223332 33333689999999999665
No 317
>PLN02529 lysine-specific histone demethylase 1
Probab=96.95 E-value=0.00096 Score=76.22 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=35.1
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 119 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~ 119 (641)
...||+|||||+|||+||..|++.| +|+|+|+....||.
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~ 198 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGR 198 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCc
Confidence 4579999999999999999999999 99999998766654
No 318
>PLN02568 polyamine oxidase
Probab=96.92 E-value=0.00097 Score=74.24 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=33.3
Q ss_pred cccEEEECccHHHHHHHHHHHhc-----C-CeEEEEecCCCCCc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKH-----G-TVAVITKAEPHESN 119 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~-----G-~V~llek~~~~~g~ 119 (641)
..||+|||+|+|||+||..|++. | +|+|+|+....||.
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr 48 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGR 48 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCe
Confidence 46999999999999999999965 4 79999998877764
No 319
>PTZ00058 glutathione reductase; Provisional
Probab=96.90 E-value=0.011 Score=66.15 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=29.6
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-.|..+++.| +|+|+++.+
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~ 270 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGN 270 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence 37999999999999999999999 999999865
No 320
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.89 E-value=0.011 Score=64.74 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=29.1
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-+|..+.+.| +|.++++..
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~ 182 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED 182 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 47999999999999999999999 999998754
No 321
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=96.88 E-value=0.0099 Score=65.04 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=29.7
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
-.|+|||+|..|+-.|..+++.| +|.|+++++.
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 200 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGEL 200 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 36999999999999999999999 9999998653
No 322
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.82 E-value=0.01 Score=69.70 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=29.0
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.++|||||..|+-+|..+++.| +|.|++..+
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~ 178 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAP 178 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 6899999999999999999999 999999765
No 323
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.82 E-value=0.0036 Score=67.40 Aligned_cols=54 Identities=22% Similarity=0.149 Sum_probs=36.0
Q ss_pred cCceEeCCCCCcc-cCCeeecccccCCCCCCC-Cccc-hhhhHHHHHHHHHHHHHHHH
Q 006532 430 CGGVRAGLQGETN-VRGLYVAGEVACTGLHGA-NRLA-SNSLLEALVFARRAVQPSID 484 (641)
Q Consensus 430 ~GGI~vD~~~~T~-ipGLyAaGe~a~~g~~Ga-~rl~-g~sl~~a~v~G~~Ag~~aa~ 484 (641)
.|.|.||++++|+ .+++||+||++. -.+.. .+.+ .-....+...+++++..+..
T Consensus 253 ~g~i~v~~~~~~~~~~~v~a~GD~~~-~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~ 309 (415)
T COG0446 253 GGAVLVDERGGTSKDPDVYAAGDVAE-IPAAETGKGGRIALWAIAVAAGRIAAENIAG 309 (415)
T ss_pred CCCEEEccccccCCCCCEEeccceEe-eecccCCceeeeechhhHhhhhHHHHHHhcc
Confidence 4559999999998 999999999872 22221 1111 22234566778888877664
No 324
>PLN02507 glutathione reductase
Probab=96.80 E-value=0.012 Score=65.27 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=29.4
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-.|..+++.| +|.|+++.+
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 236 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE 236 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC
Confidence 37999999999999999999999 999999865
No 325
>PRK14694 putative mercuric reductase; Provisional
Probab=96.79 E-value=0.015 Score=64.16 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=28.8
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||+|..|+-.|..+++.| +|+|+++..
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~ 211 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSR 211 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 37999999999999999999999 999998643
No 326
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.79 E-value=0.013 Score=64.75 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=28.0
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEec
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~ 113 (641)
.|+|||||..|+-.|..+++.| +|+|+++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 6999999999999999999999 99999864
No 327
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.79 E-value=0.011 Score=63.75 Aligned_cols=36 Identities=36% Similarity=0.412 Sum_probs=32.8
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHE 117 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~ 117 (641)
..+|+|||+|..|+.+|..|+++| +|+++|+....+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~ 172 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLG 172 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccc
Confidence 369999999999999999999999 999999987643
No 328
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.78 E-value=0.015 Score=66.23 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=29.9
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
-.|+|||||..|+-.|..+++.| +|+|||+.+.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 37999999999999999999999 9999998653
No 329
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.76 E-value=0.0095 Score=69.75 Aligned_cols=32 Identities=38% Similarity=0.497 Sum_probs=29.3
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-+|..|++.| +|.|+++.+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~ 173 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP 173 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC
Confidence 36999999999999999999999 999999754
No 330
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=96.74 E-value=0.015 Score=63.30 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=29.4
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||.+|+-+|..+++.| +|+++++..
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 170 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSE 170 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 37999999999999999999999 999999765
No 331
>PRK14727 putative mercuric reductase; Provisional
Probab=96.74 E-value=0.016 Score=64.06 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=28.4
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEec
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~ 113 (641)
-.|+|||+|..|+-.|..+++.| +|+|+++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 37999999999999999999999 99999864
No 332
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.74 E-value=0.016 Score=63.88 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=30.1
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
-.|+|||||..|+-.|..+++.| +|+||++.+.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 37999999999999999999999 9999998753
No 333
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.72 E-value=0.022 Score=62.64 Aligned_cols=32 Identities=31% Similarity=0.574 Sum_probs=29.7
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||+|..|+-.|..+++.| +|.|+++.+
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 202 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGD 202 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 47999999999999999999999 999999865
No 334
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.71 E-value=0.015 Score=64.18 Aligned_cols=53 Identities=17% Similarity=0.273 Sum_probs=36.1
Q ss_pred HHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCC
Q 006532 212 RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA 274 (641)
Q Consensus 212 ~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~ 274 (641)
..+.+.+++ .||+++.++.++++..++++ ...+.. .+|+ .+.++.||+|+|-.
T Consensus 235 ~~l~~~L~~-~GI~i~~~~~v~~i~~~~~~----~~~v~~---~~g~--~i~~D~vl~a~G~~ 287 (486)
T TIGR01423 235 KELTKQLRA-NGINIMTNENPAKVTLNADG----SKHVTF---ESGK--TLDVDVVMMAIGRV 287 (486)
T ss_pred HHHHHHHHH-cCCEEEcCCEEEEEEEcCCc----eEEEEE---cCCC--EEEcCEEEEeeCCC
Confidence 445555666 49999999999999765333 222332 2343 58999999999944
No 335
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.71 E-value=0.015 Score=68.05 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=28.9
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-C-eEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~-V~llek~~ 114 (641)
-.|+|||||..|+-+|..+.+.| + |+|+++..
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 47999999999999999999999 6 99998754
No 336
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.68 E-value=0.015 Score=63.89 Aligned_cols=32 Identities=28% Similarity=0.506 Sum_probs=29.3
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||+|..|+-.|..+++.| +|+|+++.+
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~ 210 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD 210 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 37999999999999999999999 999999765
No 337
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.68 E-value=0.012 Score=64.87 Aligned_cols=54 Identities=15% Similarity=0.128 Sum_probs=39.6
Q ss_pred HHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEec---------CCCeEEEEEcCEEEEcCCCCC
Q 006532 217 AVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNV---------ETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 217 ~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~---------~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
.+.+ .||+++.++.++++..+ ++ ++.++.+... ..|+...+.++.||+|+|-..
T Consensus 338 ~~~~-~GV~i~~~~~~~~i~~~-~g---~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p 400 (471)
T PRK12810 338 NAHE-EGVEREFNVQTKEFEGE-NG---KVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTG 400 (471)
T ss_pred HHHH-cCCeEEeccCceEEEcc-CC---EEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCC
Confidence 3444 49999999999999753 55 7888765421 134556899999999999554
No 338
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.68 E-value=0.018 Score=63.40 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=28.6
Q ss_pred ccEEEECccHHHHHHHHHHHhcC--CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~ 114 (641)
-.|+|||||..|+-+|..+.+.| +|+|+++..
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 47999999999999999999998 599998764
No 339
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.67 E-value=0.018 Score=63.31 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=28.5
Q ss_pred ccEEEECccHHHHHHHHHHHhcC--CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~ 114 (641)
-.|+|||||..|+-+|..|.+.| +|+|+++..
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 47999999999999999999998 699998753
No 340
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.63 E-value=0.022 Score=62.30 Aligned_cols=31 Identities=26% Similarity=0.550 Sum_probs=29.0
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.|+|||+|..|+-.|..+++.| +|+|++++.
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~ 191 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAAS 191 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 7999999999999999999999 999999864
No 341
>PRK07846 mycothione reductase; Reviewed
Probab=96.59 E-value=0.02 Score=62.78 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=29.8
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-.|..+++.| +|+|+++.+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~ 199 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG 199 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 47999999999999999999999 999999865
No 342
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.57 E-value=0.0025 Score=66.18 Aligned_cols=40 Identities=23% Similarity=0.447 Sum_probs=34.1
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-C--eEEEEecCCCCCcc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-T--VAVITKAEPHESNT 120 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~--V~llek~~~~~g~s 120 (641)
...+|+|||||++||+||+.|++++ + |+|+|+.+..||.-
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwi 52 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWI 52 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccccee
Confidence 4579999999999999999999998 5 56799998777643
No 343
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.56 E-value=0.017 Score=64.90 Aligned_cols=32 Identities=31% Similarity=0.398 Sum_probs=29.4
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-.|..+++.| +|+|+++..
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 47999999999999999999999 999999865
No 344
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.55 E-value=0.0026 Score=67.05 Aligned_cols=37 Identities=24% Similarity=0.466 Sum_probs=33.2
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHES 118 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g 118 (641)
...|+|||||+|||+||.+|-+.| +|+|+|.....||
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 458999999999999999999888 8999999887666
No 345
>PRK13748 putative mercuric reductase; Provisional
Probab=96.55 E-value=0.024 Score=64.06 Aligned_cols=32 Identities=31% Similarity=0.475 Sum_probs=29.0
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-.|..+++.| +|+|+++..
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 303 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARST 303 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 37999999999999999999999 999999743
No 346
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.47 E-value=0.0026 Score=64.17 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=36.5
Q ss_pred cccEEEECccHHHHHHHHHHHhcCCeEEEEecCCCCCcccc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNY 122 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G~V~llek~~~~~g~s~~ 122 (641)
.-+|.|||+|++||+||+.|+++-+|+|+|.+...||.+..
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha~T 48 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHANT 48 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcccceEEEeccccccCccce
Confidence 35899999999999999999988899999999988886643
No 347
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.02 Score=57.92 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=38.3
Q ss_pred HHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEE
Q 006532 213 ALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVT 267 (641)
Q Consensus 213 ~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~V 267 (641)
.|.+++++.++++|+.+..-+++.-+ | .+|.|....++.+|+.+.+.=..|
T Consensus 394 VLq~kl~sl~Nv~ii~na~Ttei~Gd--g--~kV~Gl~Y~dr~sge~~~l~LeGv 444 (520)
T COG3634 394 VLQDKLRSLPNVTIITNAQTTEVKGD--G--DKVTGLEYRDRVSGEEHHLELEGV 444 (520)
T ss_pred HHHHHHhcCCCcEEEecceeeEEecC--C--ceecceEEEeccCCceeEEEeeee
Confidence 45566777789999999999998854 2 279999999988887665543333
No 348
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.42 E-value=0.028 Score=59.42 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=28.3
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-C-eEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~-V~llek~~ 114 (641)
-.|+|||+|..|+-+|..+.+.| + |+|+++..
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 36999999999999999999889 6 99998754
No 349
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.42 E-value=0.028 Score=66.72 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=29.0
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-+|..+.+.| +|+++.+..
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 47999999999999999999999 999988753
No 350
>PLN02546 glutathione reductase
Probab=96.38 E-value=0.035 Score=62.23 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=29.1
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-+|+|||||..|+-.|..+++.| +|.|+++.+
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~ 285 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK 285 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc
Confidence 37999999999999999999999 999999765
No 351
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.37 E-value=0.032 Score=61.92 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=28.0
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEec
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~ 113 (641)
.|+|||||..|+-.|..+++.| +|+|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 7999999999999999999999 99999863
No 352
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.37 E-value=0.027 Score=61.40 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=29.6
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-.|..+++.| +|+|+++.+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 181 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSD 181 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 37999999999999999999999 999999865
No 353
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.34 E-value=0.0041 Score=67.25 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=33.0
Q ss_pred cccEEEECccHHHHHHHHHH-HhcC-CeEEEEecCCCCCcc
Q 006532 82 YFDFSVIGSGVAGLCYALEV-AKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~a-a~~G-~V~llek~~~~~g~s 120 (641)
..-|+||||||||+.||..+ ++.| +|.|+||.+.++|..
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLv 79 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLI 79 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEE
Confidence 45799999999999999976 4678 999999999876543
No 354
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.33 E-value=0.04 Score=60.40 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=29.6
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-.|..+++.| +|+|+++.+
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 202 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST 202 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 47999999999999999999999 999999865
No 355
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.29 E-value=0.033 Score=66.73 Aligned_cols=51 Identities=18% Similarity=0.297 Sum_probs=38.6
Q ss_pred CCcEEEcceEEEEEEecCCCCCceEEEEEEEec--------------CCCeEEEEEcCEEEEcCCCCC
Q 006532 222 PNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNV--------------ETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 222 ~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~--------------~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
.||++++++.++++..+++| ++.|+.+... .+|+...+.+|.||+|.|-..
T Consensus 622 eGI~~~~~~~p~~i~~~~~G---~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p 686 (1006)
T PRK12775 622 EGIDFFFLHSPVEIYVDAEG---SVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKA 686 (1006)
T ss_pred CCCEEEecCCcEEEEeCCCC---eEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCC
Confidence 49999999999998765566 7888876421 134556799999999999554
No 356
>PLN02976 amine oxidase
Probab=96.27 E-value=0.0051 Score=73.55 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=36.2
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s 120 (641)
...+||+|||+|++|+.||+.|++.| +|+|+|+....||..
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri 732 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRV 732 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCce
Confidence 34589999999999999999999999 999999987766643
No 357
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.26 E-value=0.0054 Score=66.45 Aligned_cols=37 Identities=30% Similarity=0.433 Sum_probs=33.9
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCc
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 119 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~ 119 (641)
-.|.|||||||||+||..|++.| .|+++|+....+|-
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGl 161 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGL 161 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCcee
Confidence 68999999999999999999999 99999998876553
No 358
>PLN03000 amine oxidase
Probab=96.25 E-value=0.0051 Score=70.95 Aligned_cols=40 Identities=20% Similarity=0.392 Sum_probs=35.9
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s 120 (641)
...||+|||+|++||.||..|.+.| +|+|+|+....+|..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi 223 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRV 223 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCc
Confidence 3589999999999999999999999 999999988777644
No 359
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.08 E-value=0.036 Score=56.90 Aligned_cols=102 Identities=21% Similarity=0.203 Sum_probs=76.9
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHHH
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~ 161 (641)
-..+|||+|..||--+---.+.| +|++||-....++. .|.
T Consensus 212 k~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~--------------------------------mD~------- 252 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV--------------------------------MDG------- 252 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc--------------------------------cCH-------
Confidence 46899999999998887778899 99999976543221 111
Q ss_pred HHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
++.+.+.+-+.+ .|+++..++.|+....+.||
T Consensus 253 -----------------------------------------------Eisk~~qr~L~k-QgikF~l~tkv~~a~~~~dg 284 (506)
T KOG1335|consen 253 -----------------------------------------------EISKAFQRVLQK-QGIKFKLGTKVTSATRNGDG 284 (506)
T ss_pred -----------------------------------------------HHHHHHHHHHHh-cCceeEeccEEEEeeccCCC
Confidence 122333344444 59999999999999887775
Q ss_pred CCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCC
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
.+-+.+.+..+++..++.+|.+.+|+|-.+
T Consensus 285 ----~v~i~ve~ak~~k~~tle~DvlLVsiGRrP 314 (506)
T KOG1335|consen 285 ----PVEIEVENAKTGKKETLECDVLLVSIGRRP 314 (506)
T ss_pred ----ceEEEEEecCCCceeEEEeeEEEEEccCcc
Confidence 335777888999999999999999999655
No 360
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.07 E-value=0.041 Score=58.33 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCC
Q 006532 210 IERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 210 ~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
+.....+.+++ .||+|+.++.|+++.. ++ +.+. +|+. .|.++.||.|+|-.+
T Consensus 211 l~~~a~~~L~~-~GV~v~l~~~Vt~v~~--~~-------v~~~---~g~~-~I~~~tvvWaaGv~a 262 (405)
T COG1252 211 LSKYAERALEK-LGVEVLLGTPVTEVTP--DG-------VTLK---DGEE-EIPADTVVWAAGVRA 262 (405)
T ss_pred HHHHHHHHHHH-CCCEEEcCCceEEECC--Cc-------EEEc---cCCe-eEecCEEEEcCCCcC
Confidence 33444455655 5999999999999863 32 4442 3443 699999999999554
No 361
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=95.93 E-value=0.063 Score=58.31 Aligned_cols=48 Identities=8% Similarity=0.025 Sum_probs=33.4
Q ss_pred HHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCC
Q 006532 213 ALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 213 ~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
.+.+.+++ .||+++.++.|.++.. + . +.. .+|+ .+.++.||+|+|-.+
T Consensus 233 ~~~~~L~~-~gV~v~~~~~v~~v~~--~----~---v~~---~~g~--~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 233 YGQRRLRR-LGVDIRTKTAVKEVLD--K----E---VVL---KDGE--VIPTGLVVWSTGVGP 280 (424)
T ss_pred HHHHHHHH-CCCEEEeCCeEEEEeC--C----E---EEE---CCCC--EEEccEEEEccCCCC
Confidence 34455555 5999999999998852 2 2 333 3455 689999999998443
No 362
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=95.90 E-value=0.15 Score=53.31 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=28.3
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
..-.|||+|+|.+|.+..-.+-..- +|+||+-..
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRn 88 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRN 88 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEecccc
Confidence 4568999999999999888887766 899998654
No 363
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=95.83 E-value=0.067 Score=55.60 Aligned_cols=36 Identities=19% Similarity=0.470 Sum_probs=29.1
Q ss_pred cccccEEEECccHHHHHHHHHHHhc----C-CeEEEEecCC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKH----G-TVAVITKAEP 115 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~----G-~V~llek~~~ 115 (641)
...|||||||||+.|++-|..+... - ||+|+|.+..
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 3479999999999998888877653 2 7999998743
No 364
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.12 Score=53.09 Aligned_cols=93 Identities=24% Similarity=0.310 Sum_probs=69.8
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHHH
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~ 161 (641)
-||+|||||-+.+-.|+.|++.+ +|.|+=|......
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra------------------------------------------- 180 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA------------------------------------------- 180 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc-------------------------------------------
Confidence 39999999999999999999999 8999987653211
Q ss_pred HHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
...+.+.+++..+|.++.++.+.++.-+ +
T Consensus 181 -------------------------------------------------~~~~~~~l~~~~~i~~~~~~~i~ei~G~--~ 209 (305)
T COG0492 181 -------------------------------------------------EEILVERLKKNVKIEVLTNTVVKEILGD--D 209 (305)
T ss_pred -------------------------------------------------CHHHHHHHHhcCCeEEEeCCceeEEecC--c
Confidence 0123344554458999999999999743 1
Q ss_pred CCceEEEEEEEecCCCeEEEEEcCEEEEcCCCC
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISKVTLLASGGA 274 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~ 274 (641)
+.++.+.+.. |+...+..+.|+++.|..
T Consensus 210 ----v~~v~l~~~~-~~~~~~~~~gvf~~iG~~ 237 (305)
T COG0492 210 ----VEGVVLKNVK-GEEKELPVDGVFIAIGHL 237 (305)
T ss_pred ----cceEEEEecC-CceEEEEeceEEEecCCC
Confidence 5678887755 666778888888888743
No 365
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.60 E-value=0.095 Score=55.65 Aligned_cols=100 Identities=13% Similarity=0.117 Sum_probs=73.4
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHH
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 160 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~ 160 (641)
.--|+|||+|..|+-+|-.+...+ +|++|++.+.+-- . .
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~------------------------------------~---l- 252 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLP------------------------------------R---L- 252 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchh------------------------------------h---h-
Confidence 346999999999999999999889 9999998763210 0 0
Q ss_pred HHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCC
Q 006532 161 CTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD 240 (641)
Q Consensus 161 ~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~ 240 (641)
-+..+-+.+...+++ .||+++.++.+.++..+.+
T Consensus 253 ---------------------------------------------f~~~i~~~~~~y~e~-kgVk~~~~t~~s~l~~~~~ 286 (478)
T KOG1336|consen 253 ---------------------------------------------FGPSIGQFYEDYYEN-KGVKFYLGTVVSSLEGNSD 286 (478)
T ss_pred ---------------------------------------------hhHHHHHHHHHHHHh-cCeEEEEecceeecccCCC
Confidence 011222333444555 5999999999999988766
Q ss_pred CCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCC
Q 006532 241 GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 241 g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
| +++-|.+. +|+ ++.|+.||+.+|..+
T Consensus 287 G---ev~~V~l~---dg~--~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 287 G---EVSEVKLK---DGK--TLEADLVVVGIGIKP 313 (478)
T ss_pred C---cEEEEEec---cCC--EeccCeEEEeecccc
Confidence 7 67666654 454 699999999999776
No 366
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.29 E-value=0.18 Score=57.91 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=28.5
Q ss_pred ccEEEECccHHHHHHHHHHHhcC--CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~ 114 (641)
-.|+|||||..|+-+|..+.+.| +|+|+.+..
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 47999999999999999999998 599998754
No 367
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.25 E-value=0.17 Score=61.02 Aligned_cols=53 Identities=13% Similarity=0.046 Sum_probs=37.7
Q ss_pred HHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 217 AVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 217 ~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
.+++ .||+++.++.++++.. ++ ++.+|.+... +|+...+.++.|+++.|-.+.
T Consensus 360 ~L~~-~GV~i~~~~~v~~i~g--~~---~v~~V~l~~~-~g~~~~i~~D~V~va~G~~Pn 412 (985)
T TIGR01372 360 EARE-LGIEVLTGHVVAATEG--GK---RVSGVAVARN-GGAGQRLEADALAVSGGWTPV 412 (985)
T ss_pred HHHH-cCCEEEcCCeEEEEec--CC---cEEEEEEEec-CCceEEEECCEEEEcCCcCch
Confidence 3444 4999999999998864 33 5667766532 344557999999999995553
No 368
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.01 E-value=0.28 Score=51.18 Aligned_cols=60 Identities=22% Similarity=0.257 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHc--CCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCC
Q 006532 209 EIERALLEAVVS--DPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASG 272 (641)
Q Consensus 209 ~~~~~l~~~~~~--~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 272 (641)
++-..|+++-.. ++.+.++..++|..+...++| + .-+...+..+|+..++..|+||+|||
T Consensus 276 ~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g---~-~~l~~~~~~~~~~~t~~~D~vIlATG 337 (436)
T COG3486 276 EIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDG---R-YRLTLRHHETGELETVETDAVILATG 337 (436)
T ss_pred HHHHHHHHHHhcCCCCCeeeccccceeeeecCCCc---e-EEEEEeeccCCCceEEEeeEEEEecc
Confidence 455566655322 357999999999999877666 5 45666676788999999999999999
No 369
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.86 E-value=0.26 Score=55.73 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=27.4
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEecC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 114 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~ 114 (641)
.-.|+|||+|..|+-+|..+.+.| +|+|+.+..
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 347999999999999999888888 588887754
No 370
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=94.86 E-value=0.025 Score=65.07 Aligned_cols=40 Identities=33% Similarity=0.370 Sum_probs=35.4
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s 120 (641)
....|.|||+|||||+||-.|.+.| -|+|.||....+|-.
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll 1824 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLL 1824 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCcee
Confidence 4578999999999999999999999 999999998776533
No 371
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=94.79 E-value=0.035 Score=59.66 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=32.6
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s 120 (641)
+.+|||||+|.|..-+..|..|++.| +|+.+|++...||..
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~ 43 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEW 43 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCch
Confidence 35799999999999999999999999 999999999877644
No 372
>PRK13984 putative oxidoreductase; Provisional
Probab=94.41 E-value=0.35 Score=55.12 Aligned_cols=50 Identities=10% Similarity=0.203 Sum_probs=34.0
Q ss_pred CCcEEEcceEEEEEEecCCCCCceEEEEEEEec--------------CCCeEEEEEcCEEEEcCCCCC
Q 006532 222 PNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNV--------------ETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 222 ~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~--------------~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
.||+++.++.++++..+ ++ ++.++.+... .+|+...+.+|.||+|+|-..
T Consensus 475 ~GV~i~~~~~~~~i~~~-~g---~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p 538 (604)
T PRK13984 475 EGVVIYPGWGPMEVVIE-ND---KVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAP 538 (604)
T ss_pred cCCEEEeCCCCEEEEcc-CC---EEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCC
Confidence 38888888877777543 44 6777655321 123456799999999999554
No 373
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=94.04 E-value=0.46 Score=50.37 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=32.4
Q ss_pred HHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCC
Q 006532 214 LLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 214 l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
+.+.+++ .||+++.++.+.++. ++ ++.+ .+|+ .+.++.||+|+|..+
T Consensus 197 ~~~~l~~-~gV~v~~~~~v~~i~---~~------~v~~---~~g~--~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 197 VLRLLAR-RGIEVHEGAPVTRGP---DG------ALIL---ADGR--TLPADAILWATGARA 243 (364)
T ss_pred HHHHHHH-CCCEEEeCCeeEEEc---CC------eEEe---CCCC--EEecCEEEEccCCCh
Confidence 4445555 599999999988873 22 2333 2454 689999999999654
No 374
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=93.96 E-value=0.063 Score=55.20 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=32.6
Q ss_pred ccEEEECccHHHHHHHHHHHhc--C-CeEEEEecCCCCCcc
Q 006532 83 FDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNT 120 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~--G-~V~llek~~~~~g~s 120 (641)
.-|.|||+||||+.+|..|-++ + +|.|+||.+.+.|-.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLv 61 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLV 61 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccccee
Confidence 3799999999999999998774 4 899999999876643
No 375
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=93.92 E-value=0.59 Score=55.64 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=28.3
Q ss_pred cccEEEECccHHHHHHHHHHHhc-C--CeEEEEecC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKH-G--TVAVITKAE 114 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~-G--~V~llek~~ 114 (641)
.-.|+|||||..|+-+|..+.+. | +|.|+.+..
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 34799999999999999998876 7 699998764
No 376
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=93.86 E-value=0.51 Score=52.16 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=27.9
Q ss_pred ccEEEECccHHHHHHHHHHHhcC--CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~ 114 (641)
-.|+|||||..|+-+|..+.+.| +|.+++..+
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~ 317 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP 317 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 47999999999999998888887 699998764
No 377
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.79 E-value=1.2 Score=46.72 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=31.9
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC--CeEEEEecCC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEP 115 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~ 115 (641)
...+|++.||-||+-|+-|+.+.+.+ +++.+||.+.
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~ 40 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD 40 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCC
Confidence 34689999999999999999999887 7999999874
No 378
>PLN02852 ferredoxin-NADP+ reductase
Probab=93.62 E-value=0.061 Score=59.01 Aligned_cols=51 Identities=25% Similarity=0.377 Sum_probs=36.9
Q ss_pred cCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhc
Q 006532 430 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 488 (641)
Q Consensus 430 ~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~ 488 (641)
.|-|.+|.+++|++|||||+|||. .|-.| + ++.++..++.+++++.+++..
T Consensus 373 ~G~V~~d~~~~T~ipGvyAaGDi~-~Gp~g---v----I~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 373 HGRVLSSASGADTEPGLYVVGWLK-RGPTG---I----IGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred CceEEeCCCCccCCCCEEEeeeEe-cCCCC---e----eeecHhhHHHHHHHHHHHHHc
Confidence 366788888899999999999998 34332 3 334455567788888887643
No 379
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=0.54 Score=44.95 Aligned_cols=56 Identities=25% Similarity=0.363 Sum_probs=43.2
Q ss_pred HHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCC
Q 006532 213 ALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASG 272 (641)
Q Consensus 213 ~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 272 (641)
.+.+++++.++|++++++.+.+.+-+ + +.+-|+.+.+..+|+...+..+.++.|.|
T Consensus 197 ~Mq~ra~~npnI~v~~nt~~~ea~gd--~--~~l~~l~ikn~~tge~~dl~v~GlFf~IG 252 (322)
T KOG0404|consen 197 IMQQRAEKNPNIEVLYNTVAVEALGD--G--KLLNGLRIKNVKTGEETDLPVSGLFFAIG 252 (322)
T ss_pred HHHHHHhcCCCeEEEechhhhhhccC--c--ccccceEEEecccCcccccccceeEEEec
Confidence 45566667789999999988888754 2 26778888888899888888777777666
No 380
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=93.27 E-value=0.87 Score=54.08 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=27.9
Q ss_pred ccEEEECccHHHHHHHHHHHhc-C--CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKH-G--TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~-G--~V~llek~~ 114 (641)
-.|+|||||..|+-+|..+.+. | +|.|+.+..
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 4799999999999999998877 5 799998764
No 381
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=92.61 E-value=0.11 Score=52.52 Aligned_cols=34 Identities=32% Similarity=0.424 Sum_probs=30.6
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 116 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~ 116 (641)
.-|-|||||.||.-||+.++++| +|.|.|-.+..
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 45889999999999999999999 99999977653
No 382
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=92.07 E-value=0.11 Score=50.90 Aligned_cols=51 Identities=20% Similarity=0.144 Sum_probs=37.9
Q ss_pred HHcCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCC
Q 006532 409 LKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHG 459 (641)
Q Consensus 409 ~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~G 459 (641)
.+.|+.|+.+-.-..+-.....|||.||+.++|+.|.+|||||+..+..|+
T Consensus 276 Satgvtpn~e~~~~~~lq~~edggikvdd~m~tslpdvFa~gDvctt~~~~ 326 (334)
T KOG2755|consen 276 SATGVTPNSEWAMNKMLQITEDGGIKVDDAMETSLPDVFAAGDVCTTTWEP 326 (334)
T ss_pred eccccCcCceEEecChhhhccccCeeehhhccccccceeeecceeccCCCC
Confidence 445777776633444556667899999999999999999999985334443
No 383
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=91.55 E-value=0.15 Score=51.30 Aligned_cols=35 Identities=31% Similarity=0.557 Sum_probs=29.7
Q ss_pred cccccEEEECccHHHHHHHHHHHhc-C--CeEEEEecC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKH-G--TVAVITKAE 114 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~-G--~V~llek~~ 114 (641)
..++.|||||||.+|+..|....++ | +|.|||-..
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 3579999999999999999988764 4 899999654
No 384
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.57 E-value=0.32 Score=53.43 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=29.5
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
.|+|||.|++|++||..|+++| +|++.|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 4899999999999999999999 9999998764
No 385
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.40 E-value=0.39 Score=53.11 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=28.7
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.|+|||+|.+|+.+|..|+++| +|+++|+..
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 6999999999999999999999 999999754
No 386
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=89.31 E-value=1.4 Score=49.57 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=37.4
Q ss_pred HHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 214 LLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 214 l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
|.+.+.+ .|++++.+....++.. ++ ++.++... +|. .+.|+-||+|+|-..+
T Consensus 193 L~~~le~-~Gi~~~l~~~t~ei~g--~~---~~~~vr~~---DG~--~i~ad~VV~a~GIrPn 244 (793)
T COG1251 193 LRRKLED-LGIKVLLEKNTEEIVG--ED---KVEGVRFA---DGT--EIPADLVVMAVGIRPN 244 (793)
T ss_pred HHHHHHh-hcceeecccchhhhhc--Cc---ceeeEeec---CCC--cccceeEEEecccccc
Confidence 4444555 5999999887777765 33 67777764 454 5899999999996554
No 387
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=89.09 E-value=0.37 Score=46.17 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=27.9
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
.-.|+|||+|.++.-+|..|++.| +|.++-|.+.
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 468999999999999999999999 9999988753
No 388
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.08 E-value=0.36 Score=50.16 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=34.8
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 118 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g 118 (641)
..++||||||.|..=...|..+++.| +|+=+|...+.||
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg 45 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGG 45 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCC
Confidence 35799999999999988888899999 9999999988765
No 389
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=89.06 E-value=0.26 Score=48.25 Aligned_cols=31 Identities=32% Similarity=0.542 Sum_probs=26.6
Q ss_pred EEEECccHHHHHHHHHHHhcC---CeEEEEecCC
Q 006532 85 FSVIGSGVAGLCYALEVAKHG---TVAVITKAEP 115 (641)
Q Consensus 85 VlVIGgG~AGl~AA~~aa~~G---~V~llek~~~ 115 (641)
.+|||||+||.+||-.+++.- +|+|+....+
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 589999999999999999865 7888886554
No 390
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=88.75 E-value=0.45 Score=43.82 Aligned_cols=30 Identities=33% Similarity=0.484 Sum_probs=27.8
Q ss_pred EEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 85 FSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 85 VlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
|.|||+|..|.+.|..++++| +|.|..+..
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 789999999999999999999 999998754
No 391
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=88.69 E-value=0.36 Score=40.94 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=28.9
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|||||||..|..-+..|.+.| +|+|+.+..
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 47999999999999999999999 999998763
No 392
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=88.55 E-value=0.63 Score=49.27 Aligned_cols=44 Identities=25% Similarity=0.228 Sum_probs=34.6
Q ss_pred eCCCCCcc-cCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhc
Q 006532 435 AGLQGETN-VRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 488 (641)
Q Consensus 435 vD~~~~T~-ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~ 488 (641)
.+...+|. +||||+||+.+ |+.| ..||...|.+||.+|+.++++
T Consensus 346 l~~~l~~k~~~~lf~AGqi~--G~~G--------y~eaaa~G~~ag~na~~~~~g 390 (392)
T PF01134_consen 346 LLNTLETKKIPGLFFAGQIN--GTEG--------YEEAAAQGLIAGINAARRLQG 390 (392)
T ss_dssp BBTTSBBSSSBTEEE-GGGG--TB-S--------HHHHHHHHHHHHHHHHHHHTT
T ss_pred cccceEECCCCCceECCCCc--chhH--------HHHHHHHHHHHHHHHHHHHcC
Confidence 34477775 99999999996 6644 789999999999999988754
No 393
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=88.20 E-value=0.74 Score=47.44 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=35.1
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s 120 (641)
..|||+|+|.|+-=+.-+..|+..| +|+.+||++..|+.+
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~ 45 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTS 45 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccc
Confidence 3799999999999998888889999 999999999876533
No 394
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=88.15 E-value=0.41 Score=51.43 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006532 92 VAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 92 ~AGl~AA~~aa~~G-~V~llek~~~~~g~s 120 (641)
+|||+||+.|+++| +|+|+|+....||..
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~ 30 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRI 30 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcce
Confidence 59999999999999 999999999887754
No 395
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=88.06 E-value=0.69 Score=41.39 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=29.2
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-C-eEEEEecC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAE 114 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~-V~llek~~ 114 (641)
...|+|||+|.+|-.++..|++.| + |.|+.|..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 457999999999999999999999 5 99998753
No 396
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=87.72 E-value=3 Score=44.07 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=33.7
Q ss_pred HHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCC
Q 006532 217 AVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 217 ~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
.+.+ .+|++..++.|.++..+ . +.+ +..+|+...|..--+|-|||-.+
T Consensus 282 ~f~~-~~I~~~~~t~Vk~V~~~------~---I~~-~~~~g~~~~iPYG~lVWatG~~~ 329 (491)
T KOG2495|consen 282 QFVR-DGIDLDTGTMVKKVTEK------T---IHA-KTKDGEIEEIPYGLLVWATGNGP 329 (491)
T ss_pred Hhhh-ccceeecccEEEeecCc------E---EEE-EcCCCceeeecceEEEecCCCCC
Confidence 3444 59999999998887422 2 233 22478888888889999998555
No 397
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=87.47 E-value=0.67 Score=44.79 Aligned_cols=31 Identities=29% Similarity=0.318 Sum_probs=28.5
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEec
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~ 113 (641)
-.|||||||..|...+..|.+.| +|+|++..
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 37999999999999999999999 99999864
No 398
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=87.44 E-value=0.73 Score=41.91 Aligned_cols=30 Identities=30% Similarity=0.636 Sum_probs=28.1
Q ss_pred EEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 85 FSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 85 VlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
|+|||+|..|+..|..|++.| +|.++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 689999999999999999999 999999876
No 399
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=87.44 E-value=0.75 Score=46.24 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=34.0
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 119 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~ 119 (641)
....|+|||.|..|..+|..|++.| +++|+|......++
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sN 69 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTN 69 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccc
Confidence 3568999999999999999999999 89999988765444
No 400
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=86.28 E-value=0.84 Score=43.12 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=26.0
Q ss_pred EEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 85 FSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 85 VlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
|.|||+|.-|..-|..++..| +|+|+|...
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 789999999999999999999 999999754
No 401
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=86.20 E-value=0.95 Score=42.19 Aligned_cols=33 Identities=24% Similarity=0.151 Sum_probs=29.5
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
...|+|+|+|.+|..||..|...| +|+++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 368999999999999999999999 999999754
No 402
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=85.90 E-value=1.1 Score=44.43 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=34.8
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCccc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNTN 121 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~s~ 121 (641)
...|+|||.|..|..+|..|++.| +++|+|.+....++..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~ 65 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQ 65 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcc
Confidence 468999999999999999999999 8999999887655443
No 403
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=85.78 E-value=0.91 Score=44.55 Aligned_cols=31 Identities=32% Similarity=0.574 Sum_probs=29.4
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.++|||+|..|...|..|.+.| .|+++|+..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 5899999999999999999999 999999876
No 404
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=85.51 E-value=0.4 Score=49.84 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=35.1
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s 120 (641)
+|||+|+|.|.-=+.-+..|+..| +|+.+||++..||.+
T Consensus 4 eyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~s 43 (440)
T KOG1439|consen 4 EYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGES 43 (440)
T ss_pred ceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccc
Confidence 499999999999998888899999 999999999877654
No 405
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=85.43 E-value=1.8 Score=44.12 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=30.2
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHE 117 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~ 117 (641)
-.-||||+|-.+|-||-.|+-.| .|+|+=|.-...
T Consensus 199 GkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~Lr 234 (503)
T KOG4716|consen 199 GKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLR 234 (503)
T ss_pred CceEEEccceeeeehhhhHhhcCCCcEEEEEEeecc
Confidence 36799999999999999999999 999888776543
No 406
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=85.34 E-value=0.94 Score=45.37 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=38.2
Q ss_pred CCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhh
Q 006532 438 QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 486 (641)
Q Consensus 438 ~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~ 486 (641)
+.+--+||||++|=.+ ..++|.+|+|- -++..+.+|++||+.+.+.+
T Consensus 207 ~t~~~~~g~~~~gm~~-~~~~~~~rmgp-~fg~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 207 NTREVVPNLYVAGMAV-AAVHGLPRMGP-IFGGMLLSGKHVAEQILEKL 253 (254)
T ss_pred ccCcccCCEEEechhh-hhhcCCCCcCc-hHHHHHHhhHHHHHHHHHHh
Confidence 3344699999999988 69999999874 46678889999999887754
No 407
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=85.33 E-value=0.96 Score=48.03 Aligned_cols=33 Identities=30% Similarity=0.330 Sum_probs=29.9
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
..+|+|||+|.+|+.+|..|...| +|+++++..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 467999999999999999999999 999999753
No 408
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=85.07 E-value=0.87 Score=50.11 Aligned_cols=33 Identities=30% Similarity=0.325 Sum_probs=30.0
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
...|+|+|+|++|+.|+..|...| +|.++|..+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 468999999999999999999999 999999764
No 409
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=84.84 E-value=0.38 Score=48.71 Aligned_cols=33 Identities=33% Similarity=0.739 Sum_probs=31.0
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
++||+|||||.||++||+.|+++| +++||.++.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 689999999999999999999999 999998865
No 410
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=84.84 E-value=0.75 Score=46.32 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=31.0
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
...+|+|||||.+|.-||.-|...| +|+++|.+.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 3579999999999999999999999 999999874
No 411
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.50 E-value=1 Score=49.24 Aligned_cols=32 Identities=34% Similarity=0.476 Sum_probs=29.4
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||+|..|+.+|..|++.| +|+++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 46999999999999999999999 999998854
No 412
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=84.48 E-value=1.1 Score=43.01 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=32.9
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 119 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~ 119 (641)
...|+|||+|.-|...|..|++.| +++|+|.+.....+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sN 60 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSN 60 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccc
Confidence 468999999999999999999999 69999988654443
No 413
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=84.25 E-value=1.3 Score=46.31 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=34.0
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCcc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNT 120 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~s 120 (641)
...|+|||.|..|..+|..|++.| +++|+|.+...-++.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL 64 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNL 64 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccccccc
Confidence 467999999999999999999999 899999988755444
No 414
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=83.39 E-value=1.4 Score=42.43 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=28.2
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEec
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~ 113 (641)
-.|||||||-.|...|..|.+.| +|+|+++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 47999999999999999999999 99999753
No 415
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=83.28 E-value=1.5 Score=41.15 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=30.8
Q ss_pred EEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCc
Q 006532 85 FSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 119 (641)
Q Consensus 85 VlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~ 119 (641)
|+|||.|..|...|..|++.| +++|+|.+.....+
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sN 38 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSN 38 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcc
Confidence 899999999999999999999 79999988764433
No 416
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=83.28 E-value=1.3 Score=39.50 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=31.0
Q ss_pred ccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHES 118 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g 118 (641)
.-|+|||+|.-|...|..|++.| +++|+|.+.....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~ 40 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPS 40 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GG
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeec
Confidence 46999999999999999999999 7999999876443
No 417
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=83.22 E-value=1 Score=43.18 Aligned_cols=48 Identities=25% Similarity=0.401 Sum_probs=38.4
Q ss_pred CCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhh
Q 006532 438 QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487 (641)
Q Consensus 438 ~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 487 (641)
+.+--.||||++|=.+ .-+||++|+|- -++..+.+|+.|++.+.+.++
T Consensus 213 ~T~eV~pgL~vaGMa~-~av~G~pRMGP-iFGgMllSGkkaAe~i~e~L~ 260 (262)
T COG1635 213 NTGEVYPGLYVAGMAV-NAVHGLPRMGP-IFGGMLLSGKKAAEEILEKLK 260 (262)
T ss_pred ccccccCCeEeehhhH-HhhcCCcccCc-hhhhhhhchHHHHHHHHHHhh
Confidence 4455799999999988 58999999864 356678889999998877653
No 418
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=83.10 E-value=1.3 Score=44.37 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=38.6
Q ss_pred CCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhh
Q 006532 439 GETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487 (641)
Q Consensus 439 ~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 487 (641)
.+--.||||++|=.+ .-+||.+|+|- -++..+.+|++||+.+.+.++
T Consensus 209 t~~~~~g~~~~gm~~-~~~~~~~rmg~-~fg~m~~sg~~~a~~~~~~~~ 255 (257)
T PRK04176 209 TGEVYPGLYVAGMAA-NAVHGLPRMGP-IFGGMLLSGKKVAELILEKLK 255 (257)
T ss_pred CCeEcCCEEEeehhh-hhhcCCCccCc-hhHhHHHhHHHHHHHHHHHhh
Confidence 344699999999988 68999999864 466788899999999887654
No 419
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=83.07 E-value=1.5 Score=40.38 Aligned_cols=30 Identities=23% Similarity=0.270 Sum_probs=27.2
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEe
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITK 112 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek 112 (641)
-.|||||||..|+.-|..|.+.| +|+||+.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 47999999999999999999999 9999953
No 420
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=83.01 E-value=1.3 Score=45.16 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=28.7
Q ss_pred ccEEEECccHHHHHHHHHHHhcC--CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~ 114 (641)
..|+|||+|.+|.++|..|++.| +|.|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 47999999999999999999999 689998753
No 421
>PRK08328 hypothetical protein; Provisional
Probab=82.96 E-value=1.5 Score=43.23 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=32.9
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 119 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~ 119 (641)
...|+|||.|..|..+|..|++.| ++.|+|.+...-++
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sN 66 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSN 66 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhh
Confidence 467999999999999999999999 89999988765433
No 422
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=82.83 E-value=1.5 Score=45.94 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=33.4
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 119 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~ 119 (641)
...|+|||+|.-|..+|..|++.| +++|+|.+....++
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sN 63 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSN 63 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHH
Confidence 468999999999999999999999 89999998765443
No 423
>PRK08223 hypothetical protein; Validated
Probab=82.47 E-value=1.8 Score=43.88 Aligned_cols=40 Identities=18% Similarity=0.132 Sum_probs=34.8
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCcc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNT 120 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~s 120 (641)
....|+|||.|.-|..+|..|+..| ++.|+|.+...-++.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNL 67 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNF 67 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhcc
Confidence 3578999999999999999999999 899999988755443
No 424
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=82.25 E-value=1.7 Score=41.91 Aligned_cols=39 Identities=28% Similarity=0.302 Sum_probs=33.7
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 119 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~ 119 (641)
....|+|||.|..|..+|..|++.| +++|+|.+.....+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sN 60 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSN 60 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccc
Confidence 3568999999999999999999999 89999998765443
No 425
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=82.04 E-value=3.2 Score=41.68 Aligned_cols=47 Identities=30% Similarity=0.345 Sum_probs=31.8
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--------CeEEEEecCCCCCccccccCceee
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--------TVAVITKAEPHESNTNYAQGGVSA 129 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--------~V~llek~~~~~g~s~~a~ggi~~ 129 (641)
..+|+|||+|..||++|+.+.+.+ +|.+++-..... .+++...|++.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~-T~s~~~AGl~~ 57 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTED-TTSDVAAGLFR 57 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccc-cccccccceee
Confidence 358999999999999998777622 577776655443 33343445543
No 426
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=81.88 E-value=1.9 Score=41.82 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=33.7
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 119 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~ 119 (641)
....|+|||.|..|...|..|++.| +++|+|.+.....+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sN 67 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSN 67 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEecccc
Confidence 3578999999999999999999999 79999998764443
No 427
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=81.75 E-value=2 Score=38.64 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=31.6
Q ss_pred EEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCcc
Q 006532 85 FSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNT 120 (641)
Q Consensus 85 VlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~s 120 (641)
|+|||.|.-|...|..|++.| +++|+|.+.....+.
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl 39 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNL 39 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchh
Confidence 899999999999999999999 799999887654443
No 428
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=81.09 E-value=1.8 Score=43.13 Aligned_cols=39 Identities=23% Similarity=0.191 Sum_probs=33.8
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCcc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNT 120 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~s 120 (641)
...|+|||.|.-|..+|..|+..| +++|+|.+...-++.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL 72 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNL 72 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchh
Confidence 578999999999999999999999 899999887654443
No 429
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=81.01 E-value=1.3 Score=47.54 Aligned_cols=32 Identities=44% Similarity=0.782 Sum_probs=30.5
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
+||+|||+|++|+++|+.+++.| +|+|+|++.
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 69999999999999999999999 999999875
No 430
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=80.86 E-value=1.9 Score=43.58 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=28.1
Q ss_pred cEEEECccHHHHHHHHHHHhcC--CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~ 114 (641)
.|+|+|+|.|+.++++.|++.| +|.|+.|..
T Consensus 124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 6999999999999999999999 599998754
No 431
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=80.59 E-value=2.2 Score=43.65 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=28.1
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-C-eEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~-V~llek~~ 114 (641)
.-|+|+|+|.+|.++|..+++.| + |.|+.|..
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 36899999999999999999999 6 99998753
No 432
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=80.57 E-value=1.9 Score=43.95 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=27.7
Q ss_pred ccEEEECccHHHHHHHHHHHhcC--CeEEEEec
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKA 113 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~ 113 (641)
..|+|+|+|.|+-++++.|++.| ++.|++|.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 160 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 46999999999999999999999 68888874
No 433
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=80.49 E-value=1.7 Score=45.91 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=26.2
Q ss_pred cEEEECccHHHHHHHHHHHhcC--CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~ 114 (641)
.|+|+|+|+-||.++..+...| +|+++|+.+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 5999999999999988888888 677777654
No 434
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=80.29 E-value=1.9 Score=46.16 Aligned_cols=32 Identities=25% Similarity=0.159 Sum_probs=29.3
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|+|.|+.|+.+|..|...| +|+++|..+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 47999999999999999999999 999998765
No 435
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=80.22 E-value=1.5 Score=41.57 Aligned_cols=31 Identities=35% Similarity=0.485 Sum_probs=24.9
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.|.|||.|-.||..|..+|+.| +|+.+|...
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 4789999999999999999999 999999654
No 436
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=80.05 E-value=2.1 Score=36.80 Aligned_cols=30 Identities=30% Similarity=0.416 Sum_probs=27.1
Q ss_pred EEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 85 FSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 85 VlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
|+|+|.|..|...|-.|.+.+ +|+++|+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 799999999999999999988 899999875
No 437
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=80.02 E-value=1.9 Score=44.60 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=28.8
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
+|.|||+|.-|..-|..++++| +|+++|+..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 5999999999999999999999 999999764
No 438
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=79.82 E-value=2.5 Score=41.55 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=28.8
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-C---eEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-T---VAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~---V~llek~~ 114 (641)
..|+|+|+|.+|..+|..|.+.| + +.|+++..
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 47999999999999999999998 7 88999864
No 439
>PLN02661 Putative thiazole synthesis
Probab=79.43 E-value=2.1 Score=44.78 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=40.0
Q ss_pred CCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhh
Q 006532 438 QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487 (641)
Q Consensus 438 ~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 487 (641)
+.+--+||||++|=.+ .-++|.+|+|- -++..+.+|++|++.+.+.++
T Consensus 281 ~t~ev~pgl~~~gm~~-~~~~g~~rmgp-~fg~m~~sg~k~a~~~~~~l~ 328 (357)
T PLN02661 281 LTREVVPGMIVTGMEV-AEIDGSPRMGP-TFGAMMISGQKAAHLALKALG 328 (357)
T ss_pred ccCcccCCEEEeccch-hhhcCCCccCc-hhHhHHhhhHHHHHHHHHHHc
Confidence 3345699999999987 68999999874 467788999999999998875
No 440
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=79.14 E-value=2.3 Score=43.30 Aligned_cols=32 Identities=28% Similarity=0.355 Sum_probs=28.4
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEec
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKA 113 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~ 113 (641)
...|+|||+|.++-+++..|++.| +|.|+.|.
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 347999999999999999999999 68899874
No 441
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=79.06 E-value=2.4 Score=41.77 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=31.8
Q ss_pred EEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCcc
Q 006532 85 FSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNT 120 (641)
Q Consensus 85 VlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~s 120 (641)
|+|||+|.-|...+..|+..| +++|+|.+....++.
T Consensus 2 VlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNL 39 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNL 39 (234)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhh
Confidence 899999999999999999999 899999988754443
No 442
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=78.98 E-value=2.2 Score=41.94 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=33.3
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 119 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~ 119 (641)
...|+|||.|..|..+|..|++.| +++|+|.+.....+
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sN 50 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSN 50 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchh
Confidence 467999999999999999999999 89999988765443
No 443
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=78.86 E-value=2.4 Score=44.89 Aligned_cols=31 Identities=29% Similarity=0.514 Sum_probs=29.2
Q ss_pred cEEEECccHHHHHHHHHHHhcC--CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~ 114 (641)
+|||||+|--|..+|..|++.| +|++.+|..
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 7999999999999999999998 899999974
No 444
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=78.64 E-value=2.6 Score=41.13 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=34.3
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCcc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNT 120 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~s 120 (641)
..-|+|||-|..|.+|+-.|++.| +++|+|.+...-.+.
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~ 70 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNT 70 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccccccccc
Confidence 568999999999999999999999 999999998754433
No 445
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=78.55 E-value=2.7 Score=43.36 Aligned_cols=32 Identities=25% Similarity=0.566 Sum_probs=29.2
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
..|+|||+|.-|...|..|++.| +|+++.+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 36999999999999999999999 999999863
No 446
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=78.51 E-value=2.4 Score=41.64 Aligned_cols=39 Identities=23% Similarity=0.191 Sum_probs=33.7
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCcc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNT 120 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~s 120 (641)
...|+|||.|..|...|..|++.| +++|+|.+.....+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL 61 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNL 61 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCccc
Confidence 468999999999999999999999 899999887654443
No 447
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.20 E-value=2.4 Score=43.25 Aligned_cols=31 Identities=32% Similarity=0.540 Sum_probs=28.4
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.|.|||+|.-|...|..+++.| +|+++|...
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 5999999999999999999999 999999653
No 448
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=77.98 E-value=3.3 Score=39.70 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=33.3
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 119 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~ 119 (641)
...|+|||.|.-|...|..|+..| +++|+|.......+
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~sn 58 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTED 58 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhc
Confidence 578999999999999999999999 79999988764443
No 449
>PRK04148 hypothetical protein; Provisional
Probab=77.80 E-value=1.8 Score=38.51 Aligned_cols=31 Identities=26% Similarity=0.249 Sum_probs=27.7
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.+++||.| .|...|..|++.| +|+.+|..+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence 369999999 9998899999999 999999765
No 450
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=77.65 E-value=2.6 Score=46.39 Aligned_cols=33 Identities=30% Similarity=0.317 Sum_probs=29.8
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
...|+|+|+|.+|+.++..|...| +|+++|...
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 468999999999999999999999 999998764
No 451
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=77.52 E-value=2.7 Score=42.75 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=32.1
Q ss_pred cEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCcc
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNT 120 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~s 120 (641)
.|+|||+|.-|...|..|+..| +++|+|.+....++.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL 39 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNP 39 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccC
Confidence 3899999999999999999999 899999887654443
No 452
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=77.39 E-value=2.6 Score=47.26 Aligned_cols=39 Identities=18% Similarity=0.276 Sum_probs=34.3
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCcc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNT 120 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~s 120 (641)
...|+|||+|.-|..+|..|+..| +++++|.+...-++.
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL 378 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNP 378 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCcc
Confidence 678999999999999999999999 899999887654443
No 453
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=77.03 E-value=3.6 Score=42.65 Aligned_cols=32 Identities=25% Similarity=0.504 Sum_probs=29.3
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
..|+|||+|.-|..-|..|++.| +|+++.++.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 36999999999999999999999 999999864
No 454
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.93 E-value=2.5 Score=46.21 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=28.4
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-|+|+|+|..|+++|..|++.| +|++.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4899999999999999999999 999998654
No 455
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.83 E-value=2.8 Score=42.78 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=28.4
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.|.|||+|.-|...|..+++.| +|+++|+..
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 4899999999999999999999 999998754
No 456
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=76.72 E-value=3 Score=43.97 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=34.1
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCcc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNT 120 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~s 120 (641)
...|+|||.|..|..+|..|+..| ++.|+|.+....++.
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL 68 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNL 68 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEccccc
Confidence 468999999999999999999999 899999987654443
No 457
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=76.40 E-value=3.5 Score=38.40 Aligned_cols=33 Identities=21% Similarity=0.138 Sum_probs=28.9
Q ss_pred ccccEEEECccH-HHHHHHHHHHhcC-CeEEEEec
Q 006532 81 KYFDFSVIGSGV-AGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 81 ~~~DVlVIGgG~-AGl~AA~~aa~~G-~V~llek~ 113 (641)
....|+|||+|- .|..+|..|.+.| +|.++.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 357899999996 7999999999999 99999875
No 458
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=76.38 E-value=3.2 Score=42.71 Aligned_cols=29 Identities=21% Similarity=0.499 Sum_probs=27.4
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEe
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITK 112 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek 112 (641)
.|+|||+|.-|...|..|++.| +|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 4899999999999999999999 9999987
No 459
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=75.64 E-value=3.3 Score=43.95 Aligned_cols=40 Identities=28% Similarity=0.283 Sum_probs=34.4
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCcc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNT 120 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~s 120 (641)
....|+|||.|..|..+|..|++.| ++.|+|.+....++.
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL 81 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNI 81 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccc
Confidence 3568999999999999999999999 899999987654443
No 460
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=75.46 E-value=3.3 Score=44.33 Aligned_cols=40 Identities=33% Similarity=0.301 Sum_probs=34.7
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCcc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNT 120 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~s 120 (641)
....|+|||.|.-|..+|..|+..| +++|+|.+...-++.
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL 82 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNL 82 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCccc
Confidence 3578999999999999999999999 899999887755544
No 461
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=75.25 E-value=3.4 Score=42.69 Aligned_cols=31 Identities=16% Similarity=0.425 Sum_probs=27.9
Q ss_pred cEEEECccHHHHHHHHHHHhcC---CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG---TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G---~V~llek~~ 114 (641)
.|.|||+|..|.+.|+.++..| .|+|+|+..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 5899999999999999999988 589999764
No 462
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=75.04 E-value=1.8 Score=44.69 Aligned_cols=65 Identities=8% Similarity=0.063 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEc-CEEEEcCCCCC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAG 275 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGg~~ 275 (641)
.+++..|...+.++ ||++-.+..|.+|..+... .+++.-.+- ...+++...+.- +-|++..|...
T Consensus 227 eSlvlPli~yL~~H-~Vdf~~~~~Vedi~v~~t~-gkkvA~aih-~~~d~~~ieLt~dDlVfvTNgsiT 292 (587)
T COG4716 227 ESLVLPLITYLKSH-GVDFTYDQKVEDIDVDDTP-GKKVAKAIH-VLGDAETIELTPDDLVFVTNGSIT 292 (587)
T ss_pred HHHHHHHHHHHHHc-CCceEeccEEeeeeeccCc-chhHHHHHH-HhcCcceeecCCCceEEEecceec
Confidence 56778888888886 9999999999999886322 112211111 113455555555 56666666554
No 463
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=74.94 E-value=3.5 Score=42.27 Aligned_cols=30 Identities=20% Similarity=0.560 Sum_probs=27.8
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEec
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~ 113 (641)
.|+|||+|.-|...|..|++.| +|+++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 4899999999999999999999 99999974
No 464
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=74.71 E-value=3.7 Score=41.90 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=27.9
Q ss_pred ccEEEECccHHHHHHHHHHHhcC--CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~ 114 (641)
..|+|+|+|.|+.++|..++..| +|.|+.|..
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 46999999999999889899988 788998854
No 465
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=74.54 E-value=3.6 Score=43.88 Aligned_cols=40 Identities=28% Similarity=0.267 Sum_probs=34.1
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCcc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNT 120 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~s 120 (641)
....|+|||.|..|..+|..|++.| +++|+|.+.....+.
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl 175 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNL 175 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhh
Confidence 3578999999999999999999999 899999887644433
No 466
>PRK06153 hypothetical protein; Provisional
Probab=73.97 E-value=3 Score=43.90 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=35.8
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCcccc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNTNY 122 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~s~~ 122 (641)
...|+|||.|..|..+|..|++.| +++|+|.+.+...+..+
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnR 218 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFR 218 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEeccccccc
Confidence 468999999999999999999999 89999998876555544
No 467
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=73.49 E-value=4.6 Score=38.68 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=32.5
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHE 117 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~ 117 (641)
...-|+|||.|.-|...|..|+..| +++|+|.+....
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~ 58 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTE 58 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccH
Confidence 3568999999999999999999999 799999887543
No 468
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=73.42 E-value=4.2 Score=41.26 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=28.9
Q ss_pred ccEEEECccHHHHHHHHHHHhcC--CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~ 114 (641)
..|+|+|+|.|+-++++.|++.| +++|+.|..
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~ 160 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTR 160 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 46999999999999999999999 699998754
No 469
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=73.41 E-value=4.2 Score=39.64 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=28.3
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEec
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~ 113 (641)
...|||||||..++.=+..|.+.| +|+||...
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 346999999999999999999999 99999754
No 470
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.20 E-value=3.7 Score=41.92 Aligned_cols=31 Identities=32% Similarity=0.441 Sum_probs=28.7
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.|.|||+|.-|..-|..++..| .|+++|..+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 5899999999999999999999 999999764
No 471
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=73.09 E-value=4.2 Score=41.46 Aligned_cols=37 Identities=30% Similarity=0.306 Sum_probs=32.0
Q ss_pred cEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCcc
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNT 120 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~s 120 (641)
.|+|||+|.-|...+..|+..| ++.|+|.+...-++.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNL 39 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNL 39 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccc
Confidence 3899999999999999999999 899999887654443
No 472
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=72.76 E-value=4.4 Score=41.60 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=30.2
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
...|+|||.|.+|..+|..|...| +|.++++..
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 468999999999999999999999 999998864
No 473
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.51 E-value=4.6 Score=41.34 Aligned_cols=31 Identities=29% Similarity=0.289 Sum_probs=28.4
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.|.|||+|.-|...|..++++| +|+++|+..
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 5999999999999999999999 999998753
No 474
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=72.29 E-value=4.1 Score=41.69 Aligned_cols=31 Identities=35% Similarity=0.528 Sum_probs=28.4
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.|.|||+|.-|...|..++..| +|+++|+..
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 4899999999999999999999 999999754
No 475
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.10 E-value=4.3 Score=42.08 Aligned_cols=31 Identities=35% Similarity=0.542 Sum_probs=28.4
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.|.|||+|.-|..-|..++..| +|+++|..+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4999999999999999999999 999999754
No 476
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=71.90 E-value=4.5 Score=43.31 Aligned_cols=34 Identities=24% Similarity=0.146 Sum_probs=30.4
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
...|+|||.|..|..+|..|...| +|+++|..+.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 457999999999999999999999 9999997653
No 477
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=71.82 E-value=4.6 Score=41.64 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=31.7
Q ss_pred cEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCc
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 119 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~ 119 (641)
.|+|||+|.-|...|..|+..| ++.|+|.+...-++
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sN 38 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSN 38 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhh
Confidence 3899999999999999999999 89999998765443
No 478
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.80 E-value=4.4 Score=44.23 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=28.6
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.|+|+|.|.+|+++|..|+++| +|++.|...
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~ 38 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKNGAEVAAYDAEL 38 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 5999999999999999999999 999998654
No 479
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=71.80 E-value=4 Score=45.54 Aligned_cols=31 Identities=32% Similarity=0.470 Sum_probs=28.0
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEec
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~ 113 (641)
..|+|+|+|.+|.++|..|++.| +|+++.|.
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 45899999999999999999999 99998763
No 480
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=71.63 E-value=4.8 Score=40.89 Aligned_cols=31 Identities=16% Similarity=0.371 Sum_probs=27.9
Q ss_pred ccEEEECccHHHHHHHHHHHhcC--CeEEEEec
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKA 113 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~ 113 (641)
..|+|+|+|.+|.+++..|++.| +|.|+.|.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46999999999999999999999 78898874
No 481
>PRK07411 hypothetical protein; Validated
Probab=71.58 E-value=4.6 Score=43.22 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=34.5
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCcc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNT 120 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~s 120 (641)
....|+|||.|.-|..+|..|+..| +++|+|.+...-++.
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL 78 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNL 78 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEeccccc
Confidence 3578999999999999999999999 899999987654443
No 482
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=71.57 E-value=4.4 Score=42.55 Aligned_cols=31 Identities=32% Similarity=0.505 Sum_probs=28.7
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.|.|||+|-.||+.|.-+++.| .|+.+|...
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 4789999999999999999999 999999765
No 483
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.35 E-value=4.5 Score=44.76 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=27.5
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEec
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~ 113 (641)
.|+|+|.|..|++++..|...| +|++.|..
T Consensus 14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 5999999999999999999999 99999854
No 484
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.18 E-value=5.7 Score=40.52 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=28.1
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEec
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKA 113 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~ 113 (641)
...|||.|+||.||.+-+.|.-.| +|+++|-.
T Consensus 170 Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~ 203 (354)
T KOG0024|consen 170 GSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLV 203 (354)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecC
Confidence 468999999999999999998888 88888853
No 485
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=69.98 E-value=4.9 Score=36.97 Aligned_cols=33 Identities=27% Similarity=0.208 Sum_probs=27.6
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
..++|+|-|..|-.+|..|...| +|+|.|.++.
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPI 57 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence 46999999999999999999999 9999998764
No 486
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=69.94 E-value=5.4 Score=40.32 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=27.9
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEec
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~ 113 (641)
-.|+|+|+|.+|.+.|..+++.| +|.+++|.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46999999999999999999999 89998764
No 487
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=69.64 E-value=5.6 Score=37.91 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=27.5
Q ss_pred ccEEEECc-cHHHHHHHHHHHhcC-CeEEEEec
Q 006532 83 FDFSVIGS-GVAGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 83 ~DVlVIGg-G~AGl~AA~~aa~~G-~V~llek~ 113 (641)
..++|+|| |..|..+|..+++.| +|+++.|.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47999997 999999999999999 99998764
No 488
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.01 E-value=33 Score=37.18 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=28.4
Q ss_pred ccEEEECccHHHHHHHHHHHhcC---CeEEEEecCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG---TVAVITKAEP 115 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G---~V~llek~~~ 115 (641)
-+|+|+|+|..=+=.=+.+.++| +|+++.|...
T Consensus 197 drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrGl 232 (474)
T COG4529 197 DRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRGL 232 (474)
T ss_pred CceEEecCCchhHHHHHHHhccCCccceEEEecccc
Confidence 45999999999998888888887 7999998763
No 489
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=68.96 E-value=4.4 Score=44.44 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=29.1
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||+|.+|+-.|..+++.+ +|.|+.+..
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 46999999999999999999999 999998854
No 490
>PRK07233 hypothetical protein; Provisional
Probab=68.89 E-value=15 Score=39.52 Aligned_cols=56 Identities=14% Similarity=0.007 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCC
Q 006532 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGG 273 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg 273 (641)
...+...|.+.+.+ .|++|+.+++|++|..++ + ++.++.. +++ .+.|+.||+|+..
T Consensus 197 ~~~l~~~l~~~l~~-~g~~v~~~~~V~~i~~~~-~---~~~~~~~----~~~--~~~ad~vI~a~p~ 252 (434)
T PRK07233 197 FATLIDALAEAIEA-RGGEIRLGTPVTSVVIDG-G---GVTGVEV----DGE--EEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHHHh-cCceEEeCCCeeEEEEcC-C---ceEEEEe----CCc--eEECCEEEECCCH
Confidence 34578889888887 489999999999998763 3 4544431 333 5899999999985
No 491
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=68.87 E-value=6 Score=40.85 Aligned_cols=31 Identities=26% Similarity=0.546 Sum_probs=27.7
Q ss_pred cEEEECccHHHHHHHHHHHhcC---CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG---TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G---~V~llek~~ 114 (641)
.|.|||+|..|.+.|+.|+..| .++|+|+..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4899999999999999999988 589999854
No 492
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=68.62 E-value=7.3 Score=35.07 Aligned_cols=31 Identities=32% Similarity=0.562 Sum_probs=27.7
Q ss_pred cEEEECc-cHHHHHHHHHHHhcC---CeEEEEecC
Q 006532 84 DFSVIGS-GVAGLCYALEVAKHG---TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGg-G~AGl~AA~~aa~~G---~V~llek~~ 114 (641)
.|.|||+ |.-|...|+.|...+ +++|+|...
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 5899999 999999999999988 589999764
No 493
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=68.49 E-value=5.7 Score=40.55 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=29.7
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
...|+|||.|..|...|..|...| +|.++++..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 357999999999999999999999 999998754
No 494
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=68.33 E-value=5.6 Score=39.42 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=32.3
Q ss_pred ccccEEEECccHHHHHHHHHHHhc-----------C-CeEEEEecCCCCCcc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKH-----------G-TVAVITKAEPHESNT 120 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~-----------G-~V~llek~~~~~g~s 120 (641)
....|+|||+|.-|...+-.|++. | +++|+|.+....++.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNL 61 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANV 61 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchh
Confidence 457899999999999999999985 4 788888877654433
No 495
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=68.23 E-value=6.2 Score=41.32 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=28.1
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEec
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~ 113 (641)
.|.|||+|.-|...|..+++.| +|.++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 5999999999999999999999 99999974
No 496
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=68.03 E-value=6 Score=40.26 Aligned_cols=31 Identities=29% Similarity=0.422 Sum_probs=28.3
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.|.|||+|.-|...|..+++.| .|+++|..+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 5999999999999999999999 999998653
No 497
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=67.90 E-value=5.8 Score=42.72 Aligned_cols=34 Identities=24% Similarity=0.081 Sum_probs=30.3
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
...|+|||.|..|..+|..|...| +|+++|..+.
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 346999999999999999999999 9999997653
No 498
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=67.69 E-value=6.5 Score=37.76 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=27.8
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEec
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~ 113 (641)
..|+|+|.|-.|..+|..|.+.| +|++.|..
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46999999999999999999999 99988753
No 499
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=67.51 E-value=5.4 Score=40.21 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=29.3
Q ss_pred cEEEECccHHHHHHHHHHHhcC--CeEEEEecCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAEP 115 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~ 115 (641)
=|+|||+|..|..++-.|.+.| ++.|+|-...
T Consensus 76 yVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqV 109 (430)
T KOG2018|consen 76 YVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQV 109 (430)
T ss_pred EEEEEecCchhHHHHHHHHHhcCceEEEechhhc
Confidence 4999999999999999999999 8999997765
No 500
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=67.49 E-value=5.4 Score=43.52 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=31.3
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
.-+|+|||+|.+|.-.|-.|++.| +|.++-|.+.
T Consensus 175 GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 175 GKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred CCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 468999999999999999999999 9999998774
Done!