Query 006532
Match_columns 641
No_of_seqs 381 out of 4195
Neff 9.0
Searched_HMMs 29240
Date Tue Mar 26 18:42:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006532.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2159-2162//hhsearch_pdb/006532hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bs2_A Quinol-fumarate reducta 1.0 1 1 712.4 47.7 521 80-622 3-566 (660)
2 2h88_A Succinate dehydrogenase 1.0 1 1 711.6 51.4 536 78-636 14-602 (621)
3 1chu_A Protein (L-aspartate ox 1.0 1 1 695.4 51.3 519 80-622 6-532 (540)
4 2wdq_A Succinate dehydrogenase 1.0 1 1 694.2 48.7 539 80-636 5-572 (588)
5 1kf6_A Fumarate reductase flav 1.0 1 1 680.9 52.3 536 80-633 3-569 (602)
6 3gyx_A Adenylylsulfate reducta 1.0 1 1 665.9 40.3 531 79-639 19-660 (662)
7 2e5v_A L-aspartate oxidase; ar 1.0 1 1 582.1 39.8 467 84-621 1-468 (472)
8 1jnr_A Adenylylsulfate reducta 1.0 1 1 570.2 43.3 525 78-640 18-640 (643)
9 1y0p_A Fumarate reductase flav 1.0 1 1 408.1 40.6 377 78-487 122-569 (571)
10 1d4d_A Flavocytochrome C fumar 1.0 1 1 405.7 34.9 376 79-487 123-570 (572)
No 1
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=1.00 E-value=1 Score=712.42 Aligned_cols=521 Identities=33% Similarity=0.500 Sum_probs=449.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCC-----CCCHHHHHHHHHHHCCCCCC
Q ss_conf 32126899996079999999988669-8699971589999510135860210499-----78899999999995657889
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCP-----SDSVESHMQDTIVAGAYLCD 153 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~-----~d~~~~~~~~~~~~g~~~~~ 153 (641)
+.++||||||||+|||+||+.|++.| +|+||||....+|+|.+++||+.+.... .|+++.++.++++.+.+.++
T Consensus 3 ~~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~~g~s~~a~GGi~a~~~~~~~g~~ds~~~~~~dt~~~g~~~~d 82 (660)
T 2bs2_A 3 VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLHFMDTVKGSDWGCD 82 (660)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGGGGCCSCEECCCCCSGGGTTCCHHHHHHHHHHHTTTCSC
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 53541999995399999999999779957999616888886100578768606876567788999999999984487778
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---------------------CCCCCCCCCCCCCEEECCCCCHHHHHH
Q ss_conf 99999999782999999998599203589997---------------------322357982013144316872799999
Q 006532 154 DETVRVVCTEGPDRIRELIAIGASFDRGEDGN---------------------LHLAREGGHSHHRIVHAADMTGREIER 212 (641)
Q Consensus 154 ~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~---------------------~~~~~~~g~~~~r~~~~~~~~g~~~~~ 212 (641)
++.+..+++++++.++|+.++|++|.+..+|. +....++++..+|.++..+.+|..+..
T Consensus 83 ~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~g~~~~~l~~~e~~~~~~~~~~gg~~~~R~~~~~d~tG~~l~~ 162 (660)
T 2bs2_A 83 QKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIHSRDFGGTKKWRTCYTADATGHTMLF 162 (660)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCBCCSEEEECCCSSCCCEEEECGGGTTSBCCBCCTTCSSCCEECSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHH
T ss_conf 99999999977999999997499832468986023334421133440222100013455660056268617987999999
Q ss_pred HHHHHHHCCCCCEEECCEEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 99999981999489854278887744899975599999996589949999827799969977867989977666733216
Q 006532 213 ALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGM 292 (641)
Q Consensus 213 ~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~G~g~ 292 (641)
.|.+.+.+ .|++|++++.|++|+.+ ++ +|.|+.+.++.+|+...|+|+.||+||||++++|..+++++.++|||+
T Consensus 163 ~L~~~a~~-~gv~i~~~~~v~~L~~~-~g---~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~y~~tt~~~~~tGdG~ 237 (660)
T 2bs2_A 163 AVANECLK-LGVSIQDRKEAIALIHQ-DG---KCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGT 237 (660)
T ss_dssp HHHHHHHH-HTCEEECSEEEEEEEEE-TT---EEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHH
T ss_pred HHHHHHHH-CCCEEEECCEEEEEEEC-CC---EEEEEEEEECCCCCEEEEECCEEEECCCCCHHHCCCCCCCCCCCCHHH
T ss_conf 99999996-79989977199999963-99---799999998899919999859899866710554477789999451899
Q ss_pred HHHHHCCC-EEECCCCCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCC-CCCCCHHHHH
Q ss_conf 88886599-560533322342000389998898777776312420211799689819988554445322-2248635899
Q 006532 293 AMAHRAQA-VISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVA 370 (641)
Q Consensus 293 ~~a~~aGa-~l~~~e~~~~~p~~~~~~g~~~~p~~~~~~~~~~~~~~~~~g~~~vn~~g~rf~~~~~~~-~~~~~~~~~~ 370 (641)
.|++++|+ .+.+|||+||||+.+... .+++++.++++|++++|.+|+|||++|.+. .++.+|++++
T Consensus 238 ~mA~~aGa~~l~~me~~q~hPt~~~~~------------~~l~se~~rg~g~ilvn~~G~RF~~~y~p~~~ela~rdvv~ 305 (660)
T 2bs2_A 238 AIALETGIAQLGNMEAVQFHPTPLFPS------------GILLTEGCRGDGGILRDVDGHRFMPDYEPEKKELASRDVVS 305 (660)
T ss_dssp HHHHTTSSSCEECTTCEEEESCBBTTT------------CCBCCTHHHHHTCEEECTTCCBCHHHHCTTTGGGSCHHHHH
T ss_pred HHHHHCCCCHHCCCHHHEECCCCCCCC------------CCEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 999980997104842431214322788------------65022000478857999999884765575322104367999
Q ss_pred HHHHHHHHHCC------CCEEEEECCCCCHHHHHHHCHHHHHHHHH-CCCCCCCCCEEEEEEECCCCCCEEECCCCCCCC
Q ss_conf 99999999369------97599917899965899458109999998-199999997447420021147348689997326
Q 006532 371 RSIDDQLKKRN------EKYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGETNV 443 (641)
Q Consensus 371 ~~~~~~~~~~~------~~~v~ld~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~i 443 (641)
+++..++.++. ..++++|.++.+.+.+..++|++.+++.+ .|+||.++|+++.|..|+++|||+||.+++|+|
T Consensus 306 rai~~~~~~g~g~~~~~~~~v~ld~~~~~~~~~~~~~p~i~e~~~~~~GiD~~~~~ipv~p~~hyt~GGi~vd~~~~v~I 385 (660)
T 2bs2_A 306 RRMIEHIRKGKGVQSPYGQHLWLDISILGRKHIETNLRDVQEICEYFAGIDPAEKWAPVLPMQHYSMGGIRTDYRGEAKL 385 (660)
T ss_dssp HHHHHHHHTTTSBCCTTCCBEEEECGGGCHHHHHHHSHHHHHHHHHTSCCCTTTSCEEECCEEEEECCEEECCTTSBCSS
T ss_pred HHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCEEEECCCCCEEC
T ss_conf 99999998468866788877999777799999998727899999985699976663576434454055599899996311
Q ss_pred CCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCH-----HHH
Q ss_conf 87023254467788899820323168999999999899898531046543-345444555557755542101-----110
Q 006532 444 RGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDL-SASNWWTRTVVPKSLGCNVMH-----NIL 517 (641)
Q Consensus 444 pGLyAaGe~~~gg~~Ga~rl~g~~l~~a~v~G~~Ag~~aa~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~ 517 (641)
|||||||||+|+|+||+||++||+|++|+|||++||++++++++....+. ... ....... ...++. +..
T Consensus 386 pGLYAaGE~a~~g~hGanrlggnsL~~~~vfGr~Ag~~aa~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~ 460 (660)
T 2bs2_A 386 KGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCANTQVDLETKT---LEKFVKG--QEAYMKSLVESKGT 460 (660)
T ss_dssp BTEEECGGGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHH---HHHHHHH--HHHHHHHHHHCCCC
T ss_pred CCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CHHHHHH--HHHHHHHHHHCCCC
T ss_conf 999955554405566888773577999999999999999987640576555544---3667888--89999887514689
Q ss_pred HCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 126999999999997217511399999999999999999999752205-7643100099999997999999999999846
Q 006532 518 RRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALAR 596 (641)
Q Consensus 518 ~~~~~~~~~l~~~m~~~~~~~r~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~~al~R 596 (641)
.++.+++++||++||+|+|++|++++|++++++|++|++++......+ ....++++.+++|++||+++|+++++|||+|
T Consensus 461 ~~~~~~~~~l~~~m~~~~gi~R~~~~L~~a~~~l~~l~~~~~~~~~~~~~~~~n~~l~~~~e~~~~l~~a~~~~~~Al~R 540 (660)
T 2bs2_A 461 EDVFKIKNRMKDVMDDNVGIFRDGPHLEKAVKELEELYKKSKNVGIKNKRLHANPELEEAYRVPMMLKVALCVAKGALDR 540 (660)
T ss_dssp BCHHHHHHHHHHHHHHHSSSSBCHHHHHHHHHHHHHHHHHHTTBCCSCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 78899999999987753864068999999999999999998506356644333056999999999999999999999857
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 65755443358999855889992652
Q 006532 597 HESRGLHYMVDFPHVEENKRLPTIIL 622 (641)
Q Consensus 597 ~ESRG~h~R~D~p~~d~~~~~~~~~~ 622 (641)
+||||+|||+|||++||++|+++++.
T Consensus 541 ~ESRG~H~R~D~p~~dd~~~~~~~~~ 566 (660)
T 2bs2_A 541 TESRGAHNREDYPKRDDINWLNRTLA 566 (660)
T ss_dssp CSCBTTBCBTTBCSEETTTCCEEEEE
T ss_pred CCCCEEEECCCCCCCCCHHHCEEEEE
T ss_conf 77710366166865682544027999
No 2
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=1.00 E-value=1 Score=711.64 Aligned_cols=536 Identities=33% Similarity=0.488 Sum_probs=456.4
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCC--CCCCHHHHHHHHHHHCCCCCCH
Q ss_conf 9632126899996079999999988669-869997158999951013586021049--9788999999999956578899
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDD 154 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~--~~d~~~~~~~~~~~~g~~~~~~ 154 (641)
.++.++||||||+|+|||+||+.|++.| +|+||||....++++.+++||+++... ..|+++.++.++++.+.+++++
T Consensus 14 ~~~~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~s~~a~GGi~a~~~~~~~ds~~~~~~dtl~~g~~l~d~ 93 (621)
T 2h88_A 14 VVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRWHFYDTVKGSDWLGDQ 93 (621)
T ss_dssp EEEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCH
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCCCEECCCCCCCCCHHHHHHHHHHHCCCCCCH
T ss_conf 54231798999964999999999997799589994568889876444798576478999978999999999854887899
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--------CEEECCCCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf 9999999782999999998599203589997322357982013--------14431687279999999999981999489
Q 006532 155 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHH--------RIVHAADMTGREIERALLEAVVSDPNISV 226 (641)
Q Consensus 155 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~--------r~~~~~~~~g~~~~~~l~~~~~~~~gv~i 226 (641)
+.++.+++++++.++|+.++|++|.+..+|.+....+++++.+ |.++..+.+|..++..|.+.+.+ .|++|
T Consensus 94 ~~v~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~g~~~~~~R~~~~~d~tG~~l~~~L~~~~~~-~gv~i 172 (621)
T 2h88_A 94 DAIHYMTEQAPAAVIELENYGMPFSRTEEGKIYQRAFGGQSLQFGKGGQAHRCCCVADRTGHSLLHTLYGRSLR-YDTSY 172 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTTSCBCCCEECSTTCHHHHHHHHHHHHHTT-SCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-CCCEE
T ss_conf 99999999899999999976998643788865002468621355677752148970698799999999999985-89989
Q ss_pred ECCEEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEECCC
Q ss_conf 85427888774489997559999999658994999982779996997786798997766673321688886599560533
Q 006532 227 FEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNME 306 (641)
Q Consensus 227 ~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~G~g~~~a~~aGa~l~~~e 306 (641)
++++.|++|+.+ ++ +|.||.+.+..+|+...|+|+.||+||||++++|..++++..++|||++|++++|+.+.+||
T Consensus 173 ~~~~~v~~Li~~-~g---~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~y~~~t~~~~~tGdG~~mA~raGa~l~~me 248 (621)
T 2h88_A 173 FVEYFALDLLME-NG---ECRGVIALCIEDGTIHRFRAKNTVIATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLE 248 (621)
T ss_dssp EETEEEEEEEEE-TT---EEEEEEEEETTTCCEEEEEEEEEEECCCCCGGGSSSBSSCTTCCCHHHHHHHHTTCCEECTT
T ss_pred EECEEEEEEEEE-CC---EEEEEEEEECCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 976099999998-99---99999999747993899974828988776655567867999977199999998399722676
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHCCC---
Q ss_conf 322342000389998898777776312420211799689819988554445322-2248635899999999993699---
Q 006532 307 FVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE--- 382 (641)
Q Consensus 307 ~~~~~p~~~~~~g~~~~p~~~~~~~~~~~~~~~~~g~~~vn~~g~rf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--- 382 (641)
|+||||+.+... .+++++.++++|++++|.+|+|||++|.+. .++.+|+++++++..++.++.+
T Consensus 249 ~~q~hPt~~~~~------------~~l~se~~rg~g~ilvn~~G~RF~~~y~p~~~ela~rdvv~rai~~e~~~g~g~~~ 316 (621)
T 2h88_A 249 FVQFHPTGIYGA------------GCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGCGP 316 (621)
T ss_dssp CEEEEEEEETTT------------CCBCCTHHHHTTCEEECTTCCCTHHHHSTTTGGGSCHHHHHHHHHHHHHTTCCBTT
T ss_pred CEEEECCCCCCC------------CCEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 335532311688------------62330222577537999999896424475311114437999999999985688666
Q ss_pred --CEEEEECCCCCHHHHHHHCHHHHHHHHHC-CCCCCCCCEEEEEEECCCCCCEEECCCCC---------CCCCCEEECC
Q ss_conf --75999178999658994581099999981-99999997447420021147348689997---------3268702325
Q 006532 383 --KYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGE---------TNVRGLYVAG 450 (641)
Q Consensus 383 --~~v~ld~~~~~~~~~~~~~~~~~~~~~~~-G~d~~~~~i~v~p~~~~~~GGi~vD~~~~---------T~ipGLyAaG 450 (641)
..+|+|+++++.+.+.++++.+.+.+..+ |+|+.++|+++.|..|+++|||+||.++| |+||||||||
T Consensus 317 ~~~~v~ld~~~l~~~~l~~~~~~i~~~~~~~~G~D~~~~pi~v~p~~h~tmGGi~~d~~~~Vl~~~~~~~t~IpGLyAaG 396 (621)
T 2h88_A 317 EKDHVYLQLHHLPPQQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQVITHVNGEDKVVPGLYACG 396 (621)
T ss_dssp TTCBEEEECTTSCHHHHHHHCHHHHHHHHHHHCCCTTTSCEEEEEEEEEESCBEEBCTTSEEEEEETTEEEEEEEEEECG
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEECCCCEEEECCCCCCCCCCCEEECC
T ss_conf 78769997366999999999889999999966999988988997104561274768899707412567896558668754
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCH-----HHHHCHHHHHH
Q ss_conf 4467788899820323168999999999899898531046543345444555557755542101-----11012699999
Q 006532 451 EVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMH-----NILRRTKEVRK 525 (641)
Q Consensus 451 e~~~gg~~Ga~rl~g~~l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 525 (641)
|++|+|+||+||++||+|++|+|||++||++++++++.... .... ....... ...+++ +...++.++++
T Consensus 397 E~a~~g~hGanrlggnsL~~~~vfGr~Ag~~aa~~~~~~~~-~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 470 (621)
T 2h88_A 397 EAASASVHGANRLGANSLLDLVVFGRACALTIAETCKPGEP-VPSI---KPNAGEE--SVANLDKLRFADGTIRTSEARL 470 (621)
T ss_dssp GGEECSSSTTSCCTTSHHHHHHHHHHHHHHHHHHHCCTTCC-CCCC---CTTTTHH--HHHHHHHHHTCBSSEEHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCC---CHHHHHH--HHHHHHHHHCCCCCCCHHHHHH
T ss_conf 32305566888775176999999999999999976301566-6555---3457888--9999987641578879999999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9999997217511399999999999999999999752205-764310009999999799999999999984665755443
Q 006532 526 ELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHY 604 (641)
Q Consensus 526 ~l~~~m~~~~~~~r~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~ 604 (641)
+||++||+++|++|++++|++++++|++|++++..+...+ ....++++.+++|++||+++|+++++|||+|+||||+||
T Consensus 471 ~l~~~m~~~~gi~R~~~~L~~a~~~l~~l~~~~~~~~~~~~~~~~n~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~H~ 550 (621)
T 2h88_A 471 NMQKTMQSHAAVFRTGSILQEGCEKLSQIYRDLAHLKTFDRGIVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHA 550 (621)
T ss_dssp HHHHHHHHHSSSSBCHHHHHHHHHHHHHHHHGGGGEECCCCCSTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCSCBTTBC
T ss_pred HHHHHHHHCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 99987650536963899999999999999999863655664221224689999999999999999999985745564132
Q ss_pred CCCCCCCCCC-----------------CCCCEEEC-C--CCCCCCCCCCCCC
Q ss_conf 3589998558-----------------89992652-7--9852111134555
Q 006532 605 MVDFPHVEEN-----------------KRLPTIIL-P--SLVNCTWSSRQLH 636 (641)
Q Consensus 605 R~D~p~~d~~-----------------~~~~~~~~-~--~~~~~~~~~~~~~ 636 (641)
|+|||++||+ +|+++++. . ++.+......|.+
T Consensus 551 R~D~p~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 602 (621)
T 2h88_A 551 REDYKLRIDEFDYSKPLQGQQKRPFEEHWRKHTLSYVDVKSGKVTLKYRPVI 602 (621)
T ss_dssp BTTBCSCCCSSCTTSCCTTCCCCCGGGCCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHCCCEEEEEEECCCCCCEEEEECCCC
T ss_conf 1547544765455688545567830110212589987278994388842652
No 3
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=1.00 E-value=1 Score=695.43 Aligned_cols=519 Identities=43% Similarity=0.684 Sum_probs=444.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 32126899996079999999988669-86999715899995101358602104997889999999999565788999999
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~ 158 (641)
+.++||||||+|+|||+||+.|++ | +|+||||....+|+|.+++|+++...++.|+++.|+.+++..+.++++++.++
T Consensus 6 ~~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~ds~~~~~~d~l~~g~g~~d~~~v~ 84 (540)
T 1chu_A 6 EHSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGSTFYAQGGIAAVFDETDSIDSHVEDTLIAGAGICDRHAVE 84 (540)
T ss_dssp SEECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC-------------CCSHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 777888999964999999999845-9938999777889987324488879716998999999999997306668899999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCC----CCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEE
Q ss_conf 999782999999998599203589----9973223579820131443168727999999999998199948985427888
Q 006532 159 VVCTEGPDRIRELIAIGASFDRGE----DGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 234 (641)
Q Consensus 159 ~~~~~~~~~i~~l~~~Gv~~~~~~----~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~ 234 (641)
.+++++++.++|+.++|++|.... ++.+.....++++.+|.++..+.++..+...|.+.+.+..||+|++++.|++
T Consensus 85 ~~~~~~~~~i~~l~~~Gv~f~~~~~~~~~g~~~~~~~gg~~~~r~~~~~d~~g~~l~~~L~~~~~~~~gv~i~~~~~v~~ 164 (540)
T 1chu_A 85 FVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHRRILHAADATGREVETTLVSKALNHPNIRVLERTNAVD 164 (540)
T ss_dssp HHHHHHHHHHHHHHHTTCC--------------------------------------CCCHHHHHHCTTEEEECSEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCEEEE
T ss_conf 99996799999999749976447666768855210146643570798479889999999999997177998995769999
Q ss_pred EEECCCCC---CCEEEEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEECCCCCCCC
Q ss_conf 77448999---755999999965899499998277999699778679899776667332168888659956053332234
Q 006532 235 LLTTLDGP---DAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFH 311 (641)
Q Consensus 235 l~~~~~g~---~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~G~g~~~a~~aGa~l~~~e~~~~~ 311 (641)
|+.++++. ..+|.||.+.+..+|+...|.|+.||+|||+++.+|..+++++.++|||++|++++|+.+.+|||+|||
T Consensus 165 L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdG~~ma~~aGa~l~~~e~~q~h 244 (540)
T 1chu_A 165 LIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANLEFNQFH 244 (540)
T ss_dssp EEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHHHHHHHHTTCCEECTTCEEEE
T ss_pred EEECCCCCCCCCCEEEEEEEEECCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHC
T ss_conf 99748997556988999999976899489998496998988766566777698988669999999769987184787426
Q ss_pred CEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 20003899988987777763124202117996898199885544453222248635899999999993699759991789
Q 006532 312 PTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISH 391 (641)
Q Consensus 312 p~~~~~~g~~~~p~~~~~~~~~~~~~~~~~g~~~vn~~g~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ld~~~ 391 (641)
|+.+..++. ..+++++.++++|++++|.+|+||+++|++..++.||++++++++.++.+++..++|+|.++
T Consensus 245 pt~~~~~~~---------~~~l~~e~~rg~g~~lvn~~G~RF~~~~~~~~el~~rd~v~~ai~~~~~~~~~~~v~ld~~~ 315 (540)
T 1chu_A 245 PTALYHPQA---------RNFLLTEALRGEGAYLKRPDGTRFMPDFDERGELAPRDIVARAIDHEMKRLGADCMFLDISH 315 (540)
T ss_dssp EEEECSTTC---------TTCBCCHHHHHTTCEEECTTSCBCGGGTCTTGGGSCHHHHHHHHHHHHHHHTCSCEEEECCS
T ss_pred CEEECCCCC---------CCCEEEHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 726547898---------76041065438843999999989865578444548677999999999984698659986456
Q ss_pred CCHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99658994581099999981999999974474200211473486899973268702325446778889982032316899
Q 006532 392 KPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEA 471 (641)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~~~gg~~Ga~rl~g~~l~~a 471 (641)
.+.+.+..++|++.+++.+.|+||.++|+++.|..|+++|||+||.++||+|||||||||++|+|+||+||++||+|.+|
T Consensus 316 ~~~~~~~~~~~~i~~~~~~~Gid~~~~~i~v~p~~h~t~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~ 395 (540)
T 1chu_A 316 KPADFIRQHFPMIYEKLLGLGIDLTQEPVPIVPAAHYTCGGVMVDDHGRTDVEGLYAIGEVSYTGLHGANRMASNSLLEC 395 (540)
T ss_dssp SCSHHHHHHCHHHHHHHHTTTCCTTTSCEEEEEEEEEESCEEECCTTCBCSSBTEEECGGGEECSSSTTSCCTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHEECCCEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 88789988556699999981939888876766478240675889989877159887661435455667876762318999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 99999998998985310465433454445555577555421011101269999999999972175113999999999999
Q 006532 472 LVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRI 551 (641)
Q Consensus 472 ~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~~r~~~~L~~al~~l 551 (641)
+|||++||+.+++++..... ......+... .... ......+.+++++||++||+|+|++|++++|++++++|
T Consensus 396 ~vfG~~Ag~~aa~~~~~~~~-~~~~~~~~~~----~~~~---~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~a~~~l 467 (540)
T 1chu_A 396 LVYGWSAAEDITRRMPYAHD-ISTLPPWDES----RVEN---PDERVVIQHNWHELRLFMWDYVGIVRTTKRLERALRRI 467 (540)
T ss_dssp HHHHHHHHHHHHHHC---CC-CCCBCCCCCC----CBCC---HHHHHHHHHHHHHHHHHHHHHSSSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCC-CCCCHHHHHH----CCCC---CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999999999974223566-5443034442----0247---65445658999999999887329411899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 99999999752205764310009999999799999999999984665755443358999855889992652
Q 006532 552 DELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIIL 622 (641)
Q Consensus 552 ~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~p~~d~~~~~~~~~~ 622 (641)
++|++++...... .. ...+++|++||+++|+++++|||+|+||||+|||+|||++|++ |+++++.
T Consensus 468 ~~l~~~~~~~~~~--~~---~~~~~~e~~~~~~~a~~~~~~al~R~ESRG~h~r~D~p~~~~~-~~~~~~~ 532 (540)
T 1chu_A 468 TMLQQEIDEYYAH--FR---VSNNLLELRNLVQVAELIVRCAMMRKESRGLHFTLDYPELLTH-SGPSILS 532 (540)
T ss_dssp HHHHHHHHHHHTT--BC---CCHHHHHHHHHHHHHHHHHHHHHHCCSCBTTBCBTTCCSCCSS-CCCCEEC
T ss_pred HHHHHHHHHHHHC--CC---CCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHH-HHCEEEC
T ss_conf 9999999987630--65---2477999999999999999999857886002662668876835-5045972
No 4
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=1.00 E-value=1 Score=694.24 Aligned_cols=539 Identities=34% Similarity=0.510 Sum_probs=450.2
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCC--CCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf 32126899996079999999988669-8699971589999510135860210499--78899999999995657889999
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCP--SDSVESHMQDTIVAGAYLCDDET 156 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~--~d~~~~~~~~~~~~g~~~~~~~~ 156 (641)
+.++||||||+|+||++||+.|++.| +|+||||....+|++.+++||+.+.... .|+++.++.+++..+.++++++.
T Consensus 5 ~~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~s~~a~GGi~~~~~~~~~ds~~~~~~d~~~~g~~~~d~~~ 84 (588)
T 2wdq_A 5 VREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDA 84 (588)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCCCEECCCCCCCCCHHHHHHHHHHHCCCCCCHHH
T ss_conf 11078899996799999999998779938999557878885166288547847998899999999999985377778999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-------CCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECC
Q ss_conf 999997829999999985992035899973223579820-------1314431687279999999999981999489854
Q 006532 157 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS-------HHRIVHAADMTGREIERALLEAVVSDPNISVFEH 229 (641)
Q Consensus 157 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~-------~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~ 229 (641)
+..+++++++.++|+.++|++|....++.+.....++++ .+|.++..+.+|..+...|.+.+.+. |++|+++
T Consensus 85 v~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~~g~~~~~~~~~~~r~~~~~d~~g~~l~~~L~~~~~~~-gv~i~~~ 163 (588)
T 2wdq_A 85 IEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKN-HTTIFSE 163 (588)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTCSBCCCEECSTTCHHHHHHHHHHHHHHHT-TCEEEET
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHC-CCEEEEC
T ss_conf 999998689999999973998666889857200147845655566736199757989899999999999867-9989937
Q ss_pred EEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEECCCCCC
Q ss_conf 27888774489997559999999658994999982779996997786798997766673321688886599560533322
Q 006532 230 HFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQ 309 (641)
Q Consensus 230 ~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~G~g~~~a~~aGa~l~~~e~~~ 309 (641)
+.|++|+.++++ +|.||.+.+..+|+...|.|+.||+|||+++..|..+++++.++|||+.|++++|+.+.+|||+|
T Consensus 164 ~~v~~L~~~~~g---~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~~y~~~~~~~~~tGdG~~ma~~aGa~l~~me~~q 240 (588)
T 2wdq_A 164 WYALDLVKNQDG---AVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQ 240 (588)
T ss_dssp EEEEEEEECTTS---CEEEEEEEETTTCCEEEEEEEEEEECCCCCGGGSSSBSSCTTCCCHHHHHHHHTTCCEECTTCEE
T ss_pred CEEEEEEECCCC---EEEEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEECHHHHH
T ss_conf 699999987999---79999999758990899975979989998755667768999863799999998599772825860
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHCCC------
Q ss_conf 342000389998898777776312420211799689819988554445322-2248635899999999993699------
Q 006532 310 FHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE------ 382 (641)
Q Consensus 310 ~~p~~~~~~g~~~~p~~~~~~~~~~~~~~~~~g~~~vn~~g~rf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------ 382 (641)
|||+.+... .+++++.++++|++++|.+|+|||++|.+. .++.+|+++++++..++.++.+
T Consensus 241 ~hpt~~~~~------------~~l~~e~~rg~g~ilvn~~G~RF~~~~~~~~~el~~rd~v~~ai~~~~~~~~~~~~~~~ 308 (588)
T 2wdq_A 241 FHPTGIAGA------------GVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWG 308 (588)
T ss_dssp EEEEEETTT------------CCBCCTHHHHTTCEEECTTCCCTHHHHCTTTGGGSCHHHHHHHHHHHHHTTCSBCSTTC
T ss_pred EECCEECCC------------CCEEEEHHCCCCCEEECCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 404134688------------54550001268747999999988645486420004378999999999985798667888
Q ss_pred CEEEEECCCCCHHHHHHHCHHHHHHHHHC-CCCCCCCCEEEEEEECCCCCCEEECCCCCC----------CCCCEEECCC
Q ss_conf 75999178999658994581099999981-999999974474200211473486899973----------2687023254
Q 006532 383 KYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGET----------NVRGLYVAGE 451 (641)
Q Consensus 383 ~~v~ld~~~~~~~~~~~~~~~~~~~~~~~-G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T----------~ipGLyAaGe 451 (641)
.++++|.++.+.+.+.++++++.+++.+. |+||.++|+++.|..|+++|||+||.++|| +|||||||||
T Consensus 309 ~~v~ld~~~~~~~~~~~~~~~i~e~~~~~~GiD~~~~~i~v~p~~h~t~GGi~vd~~~~vl~~~~~~~g~~I~GLyAaGe 388 (588)
T 2wdq_A 309 PHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGE 388 (588)
T ss_dssp SBEEEECGGGHHHHHHHHCHHHHHHHHHHTCCCTTTSCEEEEEEEEEECCBEEBCTTCEEEEECTTSCEEEEEEEEECGG
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCEECCCEECCC
T ss_conf 76997246688889998706899999984798978785788532225276389889998844444568973398065865
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHH
Q ss_conf 46778889982032316899999999989989853104654334544455555775554210111012699999999999
Q 006532 452 VACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIM 531 (641)
Q Consensus 452 ~~~gg~~Ga~rl~g~~l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m 531 (641)
++|+|+||+||++||+|.+|+|||++||++++++++..... .....+........+..-...+...++.+++.+||++|
T Consensus 389 ~a~~g~hG~nrl~gnsl~~~~vfG~~Ag~~aa~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m 467 (588)
T 2wdq_A 389 IACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGAL-RDASESDVEASLDRLNRWNNNRNGEDPVAIRKALQECM 467 (588)
T ss_dssp GEECSSSTTSCCTTHHHHHHHHHHHHHHHTHHHHHHHHCCC-CCCCHHHHHHTTHHHHHHHHCCSSBCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 66667787777764318999999999999999863414766-66544555567888887630578867799999999988
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 7217511399999999999999999999752205-764310009999999799999999999984665755443358999
Q 006532 532 WRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPH 610 (641)
Q Consensus 532 ~~~~~~~r~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~p~ 610 (641)
|+++|++|++++|++++++|++|++++......+ ....++++.+++|++||+++|+++++|||+|+||||+|||+|||+
T Consensus 468 ~~~~gi~R~~~~L~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~~al~R~ESRG~H~r~D~p~ 547 (588)
T 2wdq_A 468 QHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPD 547 (588)
T ss_dssp HHHSSSSBCHHHHHHHHHHHHHHHHHHTTBCCCCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCSCBTTBCBSSSCS
T ss_pred HHCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 64486756899999999999999998763543555444567799999998899999999999985766610266156876
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 85588999265279852111134555
Q 006532 611 VEENKRLPTIILPSLVNCTWSSRQLH 636 (641)
Q Consensus 611 ~d~~~~~~~~~~~~~~~~~~~~~~~~ 636 (641)
+||++|+++++..++ +......|+.
T Consensus 548 ~~~~~~~~~~~~~~~-~~~~~~~~v~ 572 (588)
T 2wdq_A 548 RDDENWLCHSLYLPE-SESMTRRSVN 572 (588)
T ss_dssp CCHHHHSSEEEEETT-TTEEEEECCC
T ss_pred CCHHHHHEEEEEECC-CCEEEEEECC
T ss_conf 680434026999779-8469873066
No 5
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=1.00 E-value=1 Score=680.91 Aligned_cols=536 Identities=32% Similarity=0.474 Sum_probs=452.6
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC---CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHH
Q ss_conf 32126899996079999999988669---869997158999951013586021049978899999999995657889999
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDET 156 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G---~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~ 156 (641)
+.++||||||||+||++||+.|++.| +|+||||....++++.+++||+.......|+++.++.+++..+.+++++..
T Consensus 3 ~~~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~ 82 (602)
T 1kf6_A 3 TFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDV 82 (602)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCCCHHH
T ss_conf 66478899897899999999999609998089996789999757886274188389998999999999986087788999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCC-CEEECCEEEEEE
Q ss_conf 9999978299999999859920358999732235798201314431687279999999999981999-489854278887
Q 006532 157 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPN-ISVFEHHFAIDL 235 (641)
Q Consensus 157 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~g-v~i~~~~~v~~l 235 (641)
+..+++++++.++|+..+|++|...+.+.+....++++..+|.++..+.+|..+...|.+.+.+. + +++++++.|++|
T Consensus 83 v~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~-gnv~i~~~~~v~~l 161 (602)
T 1kf6_A 83 VDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQF-PQIQRFDEHFVLDI 161 (602)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTC-TTEEEEETEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHC-CCCEEEECCEEEEE
T ss_conf 99999989999999997599721289985523355776577179707987999999999999837-99589968799999
Q ss_pred EECCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEECCCCCCCCCEEE
Q ss_conf 74489997559999999658994999982779996997786798997766673321688886599560533322342000
Q 006532 236 LTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTAL 315 (641)
Q Consensus 236 ~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~G~g~~~a~~aGa~l~~~e~~~~~p~~~ 315 (641)
+.+ ++ +|.|+.+.+..+|+...|+|+.||+|||+++.+|..+++++.++|||+.|++++|+.+.+|||+||||+.+
T Consensus 162 ~~~-~g---~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~~~~~~~~~~~tGdgi~~a~~aGa~~~~~e~~qfhPt~~ 237 (602)
T 1kf6_A 162 LVD-DG---HVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGL 237 (602)
T ss_dssp EEE-TT---EEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTTCCEESTTCEEEEEEEC
T ss_pred EEE-CC---EEEEEEEEECCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCC
T ss_conf 976-99---99999999748995899983869988887765556767999966189999998499753736762126644
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCC---------C-CC--CCCCHHHHHHHHHHHHHHCCC-
Q ss_conf 3899988987777763124202117996898199885544453---------2-22--248635899999999993699-
Q 006532 316 ADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD---------E-RA--ELAPRDVVARSIDDQLKKRNE- 382 (641)
Q Consensus 316 ~~~g~~~~p~~~~~~~~~~~~~~~~~g~~~vn~~g~rf~~~~~---------~-~~--~~~~~~~~~~~~~~~~~~~~~- 382 (641)
... .+++++.++++|++++|.+|+|||++|. + .. ++.+|+++++++..++.++.+
T Consensus 238 ~~~------------~~l~~e~~rg~g~~lvn~~G~RF~~~y~~~~~~~~~~p~~~~~el~~rd~v~~ai~~~~~~g~g~ 305 (602)
T 1kf6_A 238 PGS------------GILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTI 305 (602)
T ss_dssp TTT------------CCBCCTHHHHTTCEEECTTCCCGGGGTTTCSCCCSSCCCTTSGGGSCHHHHHHHHHHHHHHTCSB
T ss_pred CCC------------CCEECHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 887------------64430534378619999999996322000001123587642110153789999999999854886
Q ss_pred -----CEEEEECCCCCHHHHHHHCHHHHHHHHH-CCCCCCCCCEEEEEEECCCCCCEEECCCCCCCCCCEEECCCCCCCC
Q ss_conf -----7599917899965899458109999998-1999999974474200211473486899973268702325446778
Q 006532 383 -----KYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTG 456 (641)
Q Consensus 383 -----~~v~ld~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~~~gg 456 (641)
..+++|.++.+.+.+.++++++.+.+.. .|+||.++|+++.|..|+++|||+||.++||+||||||||||+|+|
T Consensus 306 ~~~~~~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~G~D~~~~pi~v~p~~h~t~GGi~vd~~~~~~IpGLyAaGe~a~~g 385 (602)
T 1kf6_A 306 STPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVG 385 (602)
T ss_dssp CCTTCCBEEEECGGGCHHHHHHHCHHHHHHHHHHHCCCTTTSCEEEEEEEEEECCEEECCTTSBCSSBTEEECGGGEECS
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHEEECCEEEECCCCCCCCCCEEECCCCCCCC
T ss_conf 57777679963156998999998779999999846999776854774002253773898899945359889761444055
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHCC
Q ss_conf 8899820323168999999999899898531046-543345444555557755542101110126999999999997217
Q 006532 457 LHGANRLASNSLLEALVFARRAVQPSIDHKKSTS-IDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYV 535 (641)
Q Consensus 457 ~~Ga~rl~g~~l~~a~v~G~~Ag~~aa~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~ 535 (641)
+||+||++||++.+|+|||++||+.+++++.... .+............ ..+..-...+....+.+++.+||++||+|+
T Consensus 386 ~hGanrl~gnsl~~~~vfGr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~ 464 (602)
T 1kf6_A 386 LHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAGVE-QRLKDLVNQDGGENWAKIRDEMGLAMEEGC 464 (602)
T ss_dssp SSTTSCCTTHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHH-HHHHHHHHCCCCBCHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-HHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 5678777607799999999999999998654057777301244567788-887663035788688999999999887528
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCC
Q ss_conf 511399999999999999999999752205-764310009999999799999999999984665755443358--99985
Q 006532 536 GIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVD--FPHVE 612 (641)
Q Consensus 536 ~~~r~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D--~p~~d 612 (641)
|++|++++|++++++|++|++++......+ ....++++.+++|++||+++|+++++|||+|+||||+|||+| ||++|
T Consensus 465 gi~R~~~~L~~a~~~l~~l~~~~~~~~~~~~~~~~n~~l~~~~e~~~~~~~a~~~~~~al~R~ESRG~H~r~D~~~p~~d 544 (602)
T 1kf6_A 465 GIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERD 544 (602)
T ss_dssp SSSBCHHHHHHHHHHHHHHHHHHTTBCCCCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCSCBTTBCBCSTTCSSCC
T ss_pred CEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC
T ss_conf 75168999999999999999988645666642100256899999998999999999999838576230773266787558
Q ss_pred CCCCCCEEEC-CC---CCCCCCCCC
Q ss_conf 5889992652-79---852111134
Q 006532 613 ENKRLPTIIL-PS---LVNCTWSSR 633 (641)
Q Consensus 613 ~~~~~~~~~~-~~---~~~~~~~~~ 633 (641)
|++|++++++ .+ .+.+.|+.-
T Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (602)
T 1kf6_A 545 DVNFLKHTLAFRDADGTTRLEYSDV 569 (602)
T ss_dssp TTTCCEEEEEEECTTSCEEEEEEEC
T ss_pred CHHHHEEEEEEECCCCCCEEEEEEC
T ss_conf 1433037999974899725887415
No 6
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=1.00 E-value=1 Score=665.89 Aligned_cols=531 Identities=17% Similarity=0.174 Sum_probs=426.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHC------C-CEEEEEECCCCCCCCCCCCC--CEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 63212689999607999999998866------9-86999715899995101358--602104997889999999999565
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKH------G-TVAVITKAEPHESNTNYAQG--GVSAVLCPSDSVESHMQDTIVAGA 149 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~------G-~V~iiek~~~~~g~s~~~~g--gi~~~~~~~d~~~~~~~~~~~~g~ 149 (641)
.+.++||||||||+|||+||+.|++. | +|+||||....++++ +++| ++++..+ .++++.++.+++..+.
T Consensus 19 ~~~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~~s~s-~AqG~~gi~a~l~-~ds~e~~~~~~~~~~~ 96 (662)
T 3gyx_A 19 VEHSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERSGA-VAQGLSAINTYLG-DNNADDYVRMVRTDLM 96 (662)
T ss_dssp EEEECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTTTCST-TTTCEEEECCCCT-TSCHHHHHHHHHHHTT
T ss_pred CEEECCEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC-CCCCCCHHEEECC-CCCHHHHHHHHHHHCC
T ss_conf 1577399998988999999999986063457978389998237999966-1358203313048-9998999999998627
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCC----------CCCCCCCCCCCEEECCCCCHHHHHHHHHHHH
Q ss_conf 78899999999978299999999859920358-999732----------2357982013144316872799999999999
Q 006532 150 YLCDDETVRVVCTEGPDRIRELIAIGASFDRG-EDGNLH----------LAREGGHSHHRIVHAADMTGREIERALLEAV 218 (641)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~-~~g~~~----------~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~ 218 (641)
++++++.++.+++++++.++|+.++|++|.+. ++|.+. ....++++.+|..+....+|..+...|.+.+
T Consensus 97 gl~d~~~v~~l~~~a~~~i~~L~~~Gv~f~~~~~~G~~~~g~~~~~fg~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~a 176 (662)
T 3gyx_A 97 GLVREDLIYDLGRHVDDSVHLFEEWGLPVWIKDEHGHNLDGAQAKAAGKSLRNGDKPVRSGRWQIMINGESYKVIVAEAA 176 (662)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHTCCBCEECSSSCEECHHHHHHHTCCTTTTCCBCCSSTTCEEEEETSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHH
T ss_conf 87669999999998899999999859973541788750223021113544345763234320105588799999999999
Q ss_pred HCC-CCCEEECCEEEEEEEECCC--CCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCC---------CCC
Q ss_conf 819-9948985427888774489--9975599999996589949999827799969977867989977---------666
Q 006532 219 VSD-PNISVFEHHFAIDLLTTLD--GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTN---------PLV 286 (641)
Q Consensus 219 ~~~-~gv~i~~~~~v~~l~~~~~--g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~---------~~~ 286 (641)
.+. .||+|++++.|++|+.+++ | +|.||.+.+..+|+...|+|+.|||||||++++|..+++ ++.
T Consensus 177 ~~~~~gV~i~~~~~v~dLi~~~~~~g---~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g~~y~~~t~~~~~~~~~~~~~ 253 (662)
T 3gyx_A 177 KNALGQDRIIERIFIVKLLLDKNTPN---RIAGAVGFNLRANEVHIFKANAMVVACGGAVNVYRPRSVGEGMGRAWYPVW 253 (662)
T ss_dssp HHHHCTTTEECSEEECCCEECSSSTT---BEEEEEEEESSSSCEEEEECSEEEECCCCBCSSSCCSCCSGGGGCCSSCTT
T ss_pred HHCCCCCEEEECEEEEEEEEECCCCC---EEEEEEEEECCCCCEEEEEECEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 83379948997619999999689666---589999998679948999809899877843013667677422366348999
Q ss_pred CCCCHHHHHHHCCCEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCC-----
Q ss_conf 733216888865995605333223420003899988987777763124202117996898199885544453222-----
Q 006532 287 ATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA----- 361 (641)
Q Consensus 287 ~~G~g~~~a~~aGa~l~~~e~~~~~p~~~~~~g~~~~p~~~~~~~~~~~~~~~~~g~~~vn~~g~rf~~~~~~~~----- 361 (641)
+||||++|++++||.+.+||| ||||+.+.+... |. ...+++++ ++++|.+|+|||++|++..
T Consensus 254 ~tGdG~~mA~~aGA~l~~me~-QfhPt~~~~~~~---p~---~~~~Lise------~ilvn~~GeRFm~~~~p~~~~~~~ 320 (662)
T 3gyx_A 254 NAGSTYTMCAQVGAEMTMMEN-RFVPARFKDGYG---PV---GAWFLLFK------AKATNCKGEDYCATNRAMLKPYEE 320 (662)
T ss_dssp CBSHHHHHHHTTTCEEECTTC-CBCCEEETTTCC---CC---HHHHHHHC------CCEECTTSCCHHHHTGGGGHHHHT
T ss_pred CCCHHHHHHHHHCCCCCCCCE-EEECCCCCCCCC---CC---CCEEEEEE------EEEECCCCCEECCCCCCHHHCCCC
T ss_conf 765699999984895028771-476530156878---88---76589963------299899999813776731101345
Q ss_pred ------CCCCHHHHHHHHHHHHHHCCCCEEEEECCC--------CCHHHH-----------HHHCHHHHHHHHHCCCCCC
Q ss_conf ------248635899999999993699759991789--------996589-----------9458109999998199999
Q 006532 362 ------ELAPRDVVARSIDDQLKKRNEKYVLLDISH--------KPTEKI-----------LSHFPNIAAECLKYGLDIT 416 (641)
Q Consensus 362 ------~~~~~~~~~~~~~~~~~~~~~~~v~ld~~~--------~~~~~~-----------~~~~~~~~~~~~~~G~d~~ 416 (641)
+++|||+++++|+.++.+++ ++||||+++ ++.+.+ .+.+|.+...+...|+||.
T Consensus 321 ~~y~~~eLapRDvvsrai~~e~~~G~-g~v~LD~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~i~~~~~~~giD~~ 399 (662)
T 3gyx_A 321 RGYAKGHVIPTCLRNHMMLREMREGR-GPIYMDTKTALQTSFATMSPAQQKHLEAEAWEDFLDMCVGQANLWAATNCAPE 399 (662)
T ss_dssp TTSSTTTCCCHHHHTHHHHHHHHTTC-CCCEECHHHHHHHHTTTSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCC-CCEEEECCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCC
T ss_conf 55455355845799999999998299-81999813851010233699999764144589999868489999997499856
Q ss_pred CCCEEEEEEECCCCCC------EEEC--------------------CCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 9974474200211473------4868--------------------9997326870232544677888998203231689
Q 006532 417 SQPIPVVPAAHYMCGG------VRAG--------------------LQGETNVRGLYVAGEVACTGLHGANRLASNSLLE 470 (641)
Q Consensus 417 ~~~i~v~p~~~~~~GG------i~vD--------------------~~~~T~ipGLyAaGe~~~gg~~Ga~rl~g~~l~~ 470 (641)
++||+|.|++||+||| |+|| .+++|+||||||||||+|+++||+ ++|++.+
T Consensus 400 ~~pipV~P~~Hy~mGG~~~~~Gi~vd~~~~~~~~~~~~~~~~~~~~~~~~t~v~gl~a~Ge~~~~~~hg~---~~~sl~~ 476 (662)
T 3gyx_A 400 ERGSEIMPTEPYLLGSHSGCCGIWASGPDEAWVPEDYKVRAANGKVYNRMTTVEGLWTCADGVGASGHKF---SSGSHAE 476 (662)
T ss_dssp TCCEEEEECCCBBCSSSSCCCEECCCCCCCTTSCGGGCCCCTTSCCCTTBCSSBTEECCSSSBCSCCCCH---HHHHHHH
T ss_pred CCCEEEEECCCEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC---HHHHHHH
T ss_conf 6762443123452366566676223574433565322234343323477873487686711243656755---7677999
Q ss_pred HHHHHHHHHHHHHHHHHCCCC--CC--CCCCCCCCC-CCCCCC-C--C-----CCCHHHHHCHHHHHHHHHHHHHHCCC-
Q ss_conf 999999998998985310465--43--345444555-557755-5--4-----21011101269999999999972175-
Q 006532 471 ALVFARRAVQPSIDHKKSTSI--DL--SASNWWTRT-VVPKSL-G--C-----NVMHNILRRTKEVRKELQSIMWRYVG- 536 (641)
Q Consensus 471 a~v~G~~Ag~~aa~~~~~~~~--~~--~~~~~~~~~-~~~~~~-~--~-----~~~~~~~~~~~~~~~~l~~~m~~~~~- 536 (641)
|++||..+++|++.... .. .+...+... ..+... . . ..+.+...++.+++++||++||+|+|
T Consensus 477 ----g~~ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~M~~~~g~ 552 (662)
T 3gyx_A 477 ----GRIVGKQMVRWYLDHKDFKPEFVETAEELKTLIYRPYYNYEKGKGASTCPVVNPEYISPKNFMMRLIKCTDEYGGG 552 (662)
T ss_dssp ----HHHHHHHHHHHHHHTCSCCCCCSSCHHHHHHHHTHHHHHHHHHGGGCSSSSSCSSSBCHHHHHHHHHHHHHHHTTC
T ss_pred ----HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf ----9999999999986177778887779999999998788655302565444446779869999999999999984588
Q ss_pred ---CCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCC
Q ss_conf ---113999-9999999999999999975220576431000999999979999999999998466575--5443358999
Q 006532 537 ---IVRSTT-SLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESR--GLHYMVDFPH 610 (641)
Q Consensus 537 ---~~r~~~-~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~~al~R~ESR--G~h~R~D~p~ 610 (641)
++|+++ +|++++++|++|++++... ...+.+++.+++|++|||++|+++++|||+||||| |+|||+|||+
T Consensus 553 ~~~v~R~~~~~L~~al~~l~~l~~~~~~~----~~~~~~~l~~~~E~~~~l~~a~~~~~~al~R~ESR~~G~H~R~D~P~ 628 (662)
T 3gyx_A 553 VGTYYNTSKALLDTGFWLMEMLEEDSLKL----AARDLHELLRCWENYHRLWTVRLHMQHIAFREESRYPGFYYRADFLG 628 (662)
T ss_dssp TTTTTEECHHHHHHHHHHHHHHHHHGGGB----CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCSSTTTCEETTSCS
T ss_pred CCCEEECCHHHHHHHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCC
T ss_conf 73379708999999999999999998547----68986899999999869999999999998475634566513466875
Q ss_pred CCCCCCCCEEEC--C-CCCCCCCCCCCCCCCC
Q ss_conf 855889992652--7-9852111134555587
Q 006532 611 VEENKRLPTIIL--P-SLVNCTWSSRQLHKLP 639 (641)
Q Consensus 611 ~d~~~~~~~~~~--~-~~~~~~~~~~~~~~~~ 639 (641)
+||++|++++++ + ++.+..+.++|+..+.
T Consensus 629 ~dd~~w~~~~~~~~~~~~g~~~~~~~p~~~~~ 660 (662)
T 3gyx_A 629 LDDSKWKCFVNSKYDPAKKETKIFKKPYYQII 660 (662)
T ss_dssp CCTTTCCSEEEEEEETTTTEEEEEEECCEECS
T ss_pred CCCCCCCEEEEEEECCCCCCEEEEEEEHHCCC
T ss_conf 67500035899998078994699996311026
No 7
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=1.00 E-value=1 Score=582.10 Aligned_cols=467 Identities=36% Similarity=0.530 Sum_probs=397.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 6899996079999999988669-869997158999951013586021049978899999999995657889999999997
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCT 162 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~ 162 (641)
||+|||+|+||++||+.|++.| +|+||||. ..+|++.+++|++.+...+.++++.++.+++..+.++++++.++.+++
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~ 79 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTS 79 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 9899997899999999998788988999689-999639898378477479999999999999996688688999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEECCCCC
Q ss_conf 82999999998599203589997322357982013144316872799999999999819994898542788877448999
Q 006532 163 EGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGP 242 (641)
Q Consensus 163 ~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~ 242 (641)
++++.++++.++|++|... ....+++.+++.++..+.++..+...|.+.+.+ .|+++++++.| +|+.+ ++
T Consensus 80 ~~~~~i~~l~~~Gv~~~~~------~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~-~gv~i~~~~~v-~l~~~-~~- 149 (472)
T 2e5v_A 80 EAKNVIETFESWGFEFEED------LRLEGGHTKRRVLHRTDETGREIFNFLLKLARE-EGIPIIEDRLV-EIRVK-DG- 149 (472)
T ss_dssp HHHHHHHHHHHTTCCCCSS------CBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHH-TTCCEECCCEE-EEEEE-TT-
T ss_pred HHHHHHHHHHHCCCCCCCC------CCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHH-CCCEEEECCEE-EEEEE-CC-
T ss_conf 8999999999749898866------656667676838995798899999999999986-89889979599-99994-99-
Q ss_pred CCEEEEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEECCCCCCCCCEEECCCCCCC
Q ss_conf 75599999996589949999827799969977867989977666733216888865995605333223420003899988
Q 006532 243 DAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPI 322 (641)
Q Consensus 243 ~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~G~g~~~a~~aGa~l~~~e~~~~~p~~~~~~g~~~ 322 (641)
+|.|+.+.+ .+| .+.|+.||+|||+++.+|+.++++..++|||+.|++++|+.+.+|||+|+||+.+..++
T Consensus 150 --~v~Gv~v~~-~~g---~~~a~~VVlAtGg~~~~~~~~~~~~~~tGdgi~~a~~aGa~~~d~e~~q~~p~~~~~gg--- 220 (472)
T 2e5v_A 150 --KVTGFVTEK-RGL---VEDVDKLVLATGGYSYLYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDG--- 220 (472)
T ss_dssp --EEEEEEETT-TEE---ECCCSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHHTTCCEECTTCEEEEEEEECGGG---
T ss_pred --EEEEEEEEE-CCC---EEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEECCCCEEEEEEEECCCC---
T ss_conf --899999995-898---39841699877877666766369999736999999984998757741489758973599---
Q ss_pred CCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCH
Q ss_conf 98777776312420211799689819988554445322224863589999999999369975999178999658994581
Q 006532 323 KPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFP 402 (641)
Q Consensus 323 ~p~~~~~~~~~~~~~~~~~g~~~vn~~g~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ld~~~~~~~~~~~~~~ 402 (641)
. .+++++.+++.|.+++|..|+||+++|++..++.+++++++.+..++.+++ .+++|.++.+. +.+.+|
T Consensus 221 ------g-~~~~ae~~~~~G~~~v~~~g~rf~~~~~~~~el~~rd~v~~~i~~~~~~~~--~v~ld~~~~~~--~~~~~~ 289 (472)
T 2e5v_A 221 ------E-VFLLTETLRGEGAQIINENGERFLFNYDKRGELAPRDILSRAIYIEMLKGH--KVFIDLSKIED--FERKFP 289 (472)
T ss_dssp ------C-CEECCTHHHHTTCEEEETTCCCGGGGTCTTGGGSCHHHHHHHHHHHHHHTC--CEEEECTTCTT--HHHHCH
T ss_pred ------C-CEEEEHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC--CEEEECCCHHH--HHHHHH
T ss_conf ------8-626106552786199999999987667865675746499999999998389--37986544499--998708
Q ss_pred HHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 09999998199999997447420021147348689997326870232544677888998203231689999999998998
Q 006532 403 NIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPS 482 (641)
Q Consensus 403 ~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~~~gg~~Ga~rl~g~~l~~a~v~G~~Ag~~a 482 (641)
++...+...|+||. +++++.|..|+++|||+||+++||+||||||||||+|.++||+||++++++.++++||++||+.+
T Consensus 290 ~~~~~~~~~G~dp~-~~i~v~p~~~~~~GGI~vd~~~~t~ipgLyAaGd~a~~~~hg~~rl~~~sl~~~~v~G~~a~~~~ 368 (472)
T 2e5v_A 290 VVAKYLARHGHNYK-VKIPIFPAAHFVDGGIRVNIRGESNIVNLYAIGEVSDSGLHGANRLASNSLLEGLVFGINLPRYV 368 (472)
T ss_dssp HHHHHHHHTTCCTT-SCEECEEEEEEESCEEECCTTCBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHCCCCC-CCEEEEHHHCEECCCEEECCCCCCCCCCEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999998192826-54686623526079767999983656888854021215667887777632899999999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98531046543345444555557755542101110126999999999997217511399999999999999999999752
Q 006532 483 IDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYL 562 (641)
Q Consensus 483 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~~r~~~~L~~al~~l~~l~~~~~~~~ 562 (641)
+.+.... ... .+. .... .....+.+++++||++||+++|++|++++|++++++|++|++
T Consensus 369 a~~~~~~---~~~--------~~~--~~~~--~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~~~~~~~~~~------ 427 (472)
T 2e5v_A 369 DSSWEGI---STD--------DGI--VHSV--RISGNKTLSLKEIRRINWENVGIIRNEEKLVKAINTYSSSTQ------ 427 (472)
T ss_dssp TSCCCCC---CCT--------TEE--EEEE--CCCCCCCCCHHHHHHHHHHHSSSSBCHHHHHHHHHHHTTCCC------
T ss_pred HHHCCCC---HHH--------HHH--CCCC--CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH------
T ss_conf 8635343---012--------211--0134--566785899999999998722903289999999999999999------
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 20576431000999999979999999999998466575544335899985588999265
Q 006532 563 FEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTII 621 (641)
Q Consensus 563 ~~~~~~~~~~~~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~p~~d~~~~~~~~~ 621 (641)
+|+++|+++++|||+|+||||+|||+|||++||+|++++++
T Consensus 428 ------------------~~~~~a~~~~~~al~R~esrG~h~r~d~p~~~~~~~~~~~~ 468 (472)
T 2e5v_A 428 ------------------NEAIISYLTALAAEIRKESRGNHFREDYPYKDPNWEKRIYF 468 (472)
T ss_dssp ------------------HHHHHHHHHHHHHHHCCSCBTTBCBTTBCSCCGGGCSEEEE
T ss_pred ------------------HHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHCEEEE
T ss_conf ------------------99999999999998562545536516688768244155898
No 8
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=1.00 E-value=1 Score=570.16 Aligned_cols=525 Identities=20% Similarity=0.223 Sum_probs=387.5
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHH---H-CC-CEEEEEECCCCCCCCCCCCCCEEEC--CCC------CCCHHHHHHHH
Q ss_conf 9632126899996079999999988---6-69-8699971589999510135860210--499------78899999999
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVA---K-HG-TVAVITKAEPHESNTNYAQGGVSAV--LCP------SDSVESHMQDT 144 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa---~-~G-~V~iiek~~~~~g~s~~~~ggi~~~--~~~------~d~~~~~~~~~ 144 (641)
..+.++||||||||+|||+||+.|+ + .| +|+||||....++ +.+++|+.... .++ .++++.++.++
T Consensus 18 ~~~~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~~~s-~~~a~G~~~~~~~~~~~~~~g~~ds~~~~~~~~ 96 (643)
T 1jnr_A 18 TEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERS-GAVAQGLSAINTYIDLTGRSERQNTLEDYVRYV 96 (643)
T ss_dssp EEEEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTC-STTTTCEEEESCCCCSSSSBSCCCCHHHHHHHH
T ss_pred EEECCCCEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC-CCEECCCCCCCCHHHHHHHCCCCCCHHHHHHHH
T ss_conf 2112379899896789999999996423407983999957677898-622036545243066787527899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99565788999999999782999999998599203589997322357982013144316872799999999999819994
Q 006532 145 IVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNI 224 (641)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv 224 (641)
...+.++++++.++.+++++++.++|+.++|++|....+|.+.. .+... . ...+..+.+.|.+.+.+..||
T Consensus 97 ~~~g~~l~d~~~v~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~--~~~~~--~-----~~~g~~~~~~l~~~~~~~~gv 167 (643)
T 1jnr_A 97 TLDMMGLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYVR--EGQWQ--I-----MIHGESYKPIIAEAAKMAVGE 167 (643)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCBCBCTTSCBCB--SSSSC--E-----EEEETTHHHHHHHHHHHHHCG
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCC--CCCCC--C-----CCCCHHHHHHHHHHHHHCCCC
T ss_conf 98716768599999999878999999997599640389997637--78644--6-----778388999999999854998
Q ss_pred -EEECCEEEEEEEECCC--CCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCC---------CCCCCCCCHH
Q ss_conf -8985427888774489--997559999999658994999982779996997786798997---------7666733216
Q 006532 225 -SVFEHHFAIDLLTTLD--GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTT---------NPLVATGDGM 292 (641)
Q Consensus 225 -~i~~~~~v~~l~~~~~--g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~---------~~~~~~G~g~ 292 (641)
++++++.|++|+.+++ + +|.||.+.+..+|+...|+|+.||+||||++.+|..++ +++.++|||+
T Consensus 168 ~~i~~~~~v~~L~~~~~~~g---~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~~y~~~~~~~~~~~~~~~~~~tGdG~ 244 (643)
T 1jnr_A 168 ENIYERVFIFELLKDNNDPN---AVAGAVGFSVREPKFYVFKAKAVILATGGATLLFRPRSTGEAAGRTWYAIFDTGSGY 244 (643)
T ss_dssp GGEECSEEEEEEEECTTCTT---BEEEEEEEESSSSCEEEEECSEEEECCCCBCSSSCCSCCSGGGGCCSSCTTCBSHHH
T ss_pred CEEEECCEEEEEEECCCCCC---EEEEEEEEEECCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 28976689899997388466---368899998058947999748799888762113567656644465569999866899
Q ss_pred HHHHHCCCEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCC-C--------
Q ss_conf 8888659956053332234200038999889877777631242021179968981998855444532222-4--------
Q 006532 293 AMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAE-L-------- 363 (641)
Q Consensus 293 ~~a~~aGa~l~~~e~~~~~p~~~~~~g~~~~p~~~~~~~~~~~~~~~~~g~~~vn~~g~rf~~~~~~~~~-~-------- 363 (641)
.|++++|+.+.+||+ ||||+.+..... |. ...+ ...+++++|.+|+|||++|.+..+ +
T Consensus 245 ~mA~~aGa~l~~me~-qf~pt~~~~~~~---~~---~~~~------l~~g~ilvn~~G~RF~~e~~~~~~~~~~~~~~~~ 311 (643)
T 1jnr_A 245 YMGLKAGAMLTQFEH-RFIPFRFKDGYG---PV---GAWF------LFFKCKAKNAYGEEYIKTRAAELEKYKPYGAAQP 311 (643)
T ss_dssp HHHHHHTCCEESTTC-CBCCEEETTTCC---CC---HHHH------HTSCCCEECTTSCCHHHHTSGGGGGGTTGGGSSS
T ss_pred HHHHHHCCCCCCCHH-EEECCCCCCCCC---CC---CCCE------ECCCCEEECCCCCCHHHCCCHHHHHHHHHCCCCC
T ss_conf 999984796578411-363131368888---86---5111------1356268778998645333535555765403677
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCC---------------CCHHH---HHHHCHHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 8635899999999993699759991789---------------99658---99458109999998199999997447420
Q 006532 364 APRDVVARSIDDQLKKRNEKYVLLDISH---------------KPTEK---ILSHFPNIAAECLKYGLDITSQPIPVVPA 425 (641)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~v~ld~~~---------------~~~~~---~~~~~~~~~~~~~~~G~d~~~~~i~v~p~ 425 (641)
.++++++++++.++..++ +++|+|..+ ++.+. ....++.....+.+.|+|+.++|+++.|.
T Consensus 312 ~~rd~~~~~i~~e~~~g~-g~~~l~~~~~~~ela~~~gld~~~l~~~~~~~~l~~~~~~~~~~~~~G~D~~~~~ipv~p~ 390 (643)
T 1jnr_A 312 IPTPLRNHQVMLEIMDGN-QPIYMHTEEALAELAGGDKKKLKHIYEEAFEDFLDMTVSQALLWACQNIDPQEQPSEAAPA 390 (643)
T ss_dssp CCHHHHHHHHHHHHHTTC-CCEEECHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTTSCEEEEEC
T ss_pred CCCHHHHHHHHHHHHCCC-CCCEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 882156899999986379-9824660465999998715685450577898899985999999986699966686523687
Q ss_pred ECCCCC------CEEEC-----------------CCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 021147------34868-----------------9997326870232544677888998203231689999999998998
Q 006532 426 AHYMCG------GVRAG-----------------LQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPS 482 (641)
Q Consensus 426 ~~~~~G------Gi~vD-----------------~~~~T~ipGLyAaGe~~~gg~~Ga~rl~g~~l~~a~v~G~~Ag~~a 482 (641)
.||++| ||+|| .+++|+|||||||||++|++ .||++||+|+ +|++||+++
T Consensus 391 ~hy~~G~~~t~gGi~~d~~~~vl~~~~~~~v~~~~~~~t~I~GLyAaGe~a~~~---~~r~~~~sl~----~G~~ag~~a 463 (643)
T 1jnr_A 391 EPYIMGSHSGEAGFWVCGPEDLMPEEYAKLFPLKYNRMTTVKGLFAIGDCAGAN---PHKFSSGSFT----EGRIAAKAA 463 (643)
T ss_dssp CCBBCSSSSCCCEECCCCCTTTCCHHHHTTCSSCCTTBCSSBTEEECGGGBCSC---CCCHHHHHHH----HHHHHHHHH
T ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEECCEEEEECCCCCC---CCCCCHHHHH----HHHHHHHHH
T ss_conf 880256544666546567401045311233334456886547887511244465---6664146999----999999999
Q ss_pred HHHHHCCC--CCCC--CCCCC-CCCCCCCC--------CCCCCCHHHHHCHHHHHHHHHHHHHHCCC----CCCCHH-HH
Q ss_conf 98531046--5433--45444-55555775--------55421011101269999999999972175----113999-99
Q 006532 483 IDHKKSTS--IDLS--ASNWW-TRTVVPKS--------LGCNVMHNILRRTKEVRKELQSIMWRYVG----IVRSTT-SL 544 (641)
Q Consensus 483 a~~~~~~~--~~~~--~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~m~~~~~----~~r~~~-~L 544 (641)
+++++... .... +.... .....+.. ......++...++.+++.+||++||+|+| ++|+++ +|
T Consensus 464 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~M~~~~g~i~~~~R~~~~~L 543 (643)
T 1jnr_A 464 VRFILEQKPNPEIDDAVVEELKKKAYAPMERFMQYKDLSTADDVNPEYILPWQGLVRLQKIMDEYAAGIATIYKTNEKML 543 (643)
T ss_dssp HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHGGGCSSTTCCTTCBCHHHHHHHHHHHHHHHTTCGGGTTEECHHHH
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCHHHH
T ss_conf 99985058888988789999999997178876520233456656768889999999999999997377863242078999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 99999999999999975220576431000999999979999999999998466575--5443358999855889992652
Q 006532 545 QTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESR--GLHYMVDFPHVEENKRLPTIIL 622 (641)
Q Consensus 545 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~~al~R~ESR--G~h~R~D~p~~d~~~~~~~~~~ 622 (641)
++++++|++|++++... ...+.+++.+++|++||+++|+++++|||+|+||| |+|||+|||++||++|+++++.
T Consensus 544 ~~al~~l~~l~~~~~~~----~~~~~~~l~~~~e~~n~l~~a~~i~~aAl~R~ESR~~G~H~R~D~P~~d~~~~~~~~~~ 619 (643)
T 1jnr_A 544 QRALELLAFLKEDLEKL----AARDLHELMRAWELVHRVWTAEAHVRHMLFRKETRWPGYYYRTDYPELNDEEWKCFVCS 619 (643)
T ss_dssp HHHHHHHHHHHHHHTTB----CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCSSTTTCEETTSCSCCTTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCHHHHHHHHHH
T ss_conf 99999999999998744----58988999999999989999999999998450414677334356886684888888765
Q ss_pred --C-CCCCCCCCCCCCCCCCC
Q ss_conf --7-98521111345555879
Q 006532 623 --P-SLVNCTWSSRQLHKLPV 640 (641)
Q Consensus 623 --~-~~~~~~~~~~~~~~~~~ 640 (641)
+ ++.++.....|+..+|.
T Consensus 620 ~~~~~~~~~~~~~~pv~~~~~ 640 (643)
T 1jnr_A 620 KYDAEKDEWTFEKVPYVQVIE 640 (643)
T ss_dssp EEETTTTEEEEEEEECCCCBC
T ss_pred HCCCCCCCEEEEEEECCCCCC
T ss_conf 222689835899853566776
No 9
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=1.00 E-value=1 Score=408.13 Aligned_cols=377 Identities=30% Similarity=0.434 Sum_probs=299.7
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECC-------CCCCCHHHHHHHHHHHCC
Q ss_conf 9632126899996079999999988669-86999715899995101358602104-------997889999999999565
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGA 149 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~-------~~~d~~~~~~~~~~~~g~ 149 (641)
....++||||||+|+||++||+.|++.| +|+||||....+|++.++.|+++... +..++++.++.+++..+.
T Consensus 122 ~~~~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~ 201 (571)
T 1y0p_A 122 APHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQ 201 (571)
T ss_dssp CCSEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTT
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCEEEECCCHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf 88888998998978899999999997899589996888898721230965783799999974899999999999997468
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC--CCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 7889999999997829999999985992035899973223579820131443168--72799999999999819994898
Q 006532 150 YLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAAD--MTGREIERALLEAVVSDPNISVF 227 (641)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~--~~g~~~~~~l~~~~~~~~gv~i~ 227 (641)
+..++++++.+.+.+.+.++|+.++|++|.. ....+++.+++.....+ ..+..+...|.+.+.+ .||+|+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~-------~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~-~gv~i~ 273 (571)
T 1y0p_A 202 NINDPALVKVLSSHSKDSVDWMTAMGADLTD-------VGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVK-RNIDLR 273 (571)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHTTCCCCE-------EECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHH-TTCEEE
T ss_pred CCCCHHHHHHHHHCCHHHHHHHHHCCCCCCC-------CCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHH-CCCEEE
T ss_conf 8799999999997329999999963998765-------75547867880375689887779999999999996-599799
Q ss_pred CCEEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCCC------CC------CCCCCCCCCCCHHHHH
Q ss_conf 54278887744899975599999996589949999827799969977867------98------9977666733216888
Q 006532 228 EHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI------YP------STTNPLVATGDGMAMA 295 (641)
Q Consensus 228 ~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~------~~------~~~~~~~~~G~g~~~a 295 (641)
++++|++|+.++++ +|.|+.+.+ .+|+...|+|+.||+|||+++.. |. .+.+++.++|||+.|+
T Consensus 274 ~~~~v~~l~~~~~g---~v~Gv~~~~-~~g~~~~i~a~~VVlAtGg~~~n~~~~~~~~p~~~~~~~~~~~~~tGdg~~~a 349 (571)
T 1y0p_A 274 MNTRGIEVLKDDKG---TVKGILVKG-MYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVA 349 (571)
T ss_dssp SSEEEEEEEECTTS---CEEEEEEEE-TTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCCBCSCTTCSSHHHHHH
T ss_pred ECCEEEEEEECCCC---EEEEEEEEE-CCCCEEEEECCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 57885486986998---299999996-79968999789599948985209999997586545776559999856999999
Q ss_pred HHCCCEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 86599560533322342000389998898777776312420211799689819988554445322224863589999999
Q 006532 296 HRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDD 375 (641)
Q Consensus 296 ~~aGa~l~~~e~~~~~p~~~~~~g~~~~p~~~~~~~~~~~~~~~~~g~~~vn~~g~rf~~~~~~~~~~~~~~~~~~~~~~ 375 (641)
+++|+.+.+|+++|+||+.+...+ .+.++.+++++.++||.+|+||++ |+.+|+.+++++..
T Consensus 350 ~~~Ga~~~~~~~~~~~p~~~~~~~------------~~~~~~~~~~g~i~vn~~G~RF~~------E~~~~~~~~~a~~~ 411 (571)
T 1y0p_A 350 ENAGGALKDMQYIQAHPTLSVKGG------------VMVTEAVRGNGAILVNREGKRFVN------EITTRDKASAAILA 411 (571)
T ss_dssp HHTTCCEECTTCEEEEEEEETTTC------------SBCCTHHHHTTCEEECTTSCCCSC------TTSCHHHHHHHHHT
T ss_pred HHCCCCEECCCCEEECCCCCCCCC------------CEEEECCCCCCEEEECCCCCCCCC------CCCCHHHHHHHHHH
T ss_conf 984993847862036574037878------------512200257863899998887758------88757689999984
Q ss_pred HHHHCCCCEEEEECCCCCH----HHHH-----HHCHHHHHHHHHC--------------------CCCC-----------
Q ss_conf 9993699759991789996----5899-----4581099999981--------------------9999-----------
Q 006532 376 QLKKRNEKYVLLDISHKPT----EKIL-----SHFPNIAAECLKY--------------------GLDI----------- 415 (641)
Q Consensus 376 ~~~~~~~~~v~ld~~~~~~----~~~~-----~~~~~~~~~~~~~--------------------G~d~----------- 415 (641)
+... ..++++|...... +... .+.+++.+++.+. |.|+
T Consensus 412 ~~~~--~~~~i~d~~~~~~~~~~~~~~~~g~~~~~~tl~ela~~~gi~~~~l~~tv~~yn~~~~~g~D~~f~k~~~~~~i 489 (571)
T 1y0p_A 412 QTGK--SAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRAL 489 (571)
T ss_dssp SGGG--CEEEEEEHHHHHHCTTHHHHHHHTCCCEESSHHHHHHHHTSCHHHHHHHHHHHHHHHHHTCCTTTCCSCCCCCS
T ss_pred CCCC--CEEEEECHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 7699--78999883897641417778657808981989999988296999999999999999873998355987777747
Q ss_pred CCCC---EEEEEEECCCCCCEEECCCCC------CCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9997---447420021147348689997------3268702325446778889982032316899999999989989853
Q 006532 416 TSQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 486 (641)
Q Consensus 416 ~~~~---i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~~~gg~~Ga~rl~g~~l~~a~v~G~~Ag~~aa~~~ 486 (641)
.+.| +++.|..|+++|||+||+++| |+|||||||||++ +|+||+||++|+++++++|||++||+++++++
T Consensus 490 ~~~Pfya~~~~p~~~~t~GGl~id~~~~vl~~~g~~I~GLyAaGe~~-~g~~g~~~l~g~sl~~~~~fGr~Ag~~aa~~~ 568 (571)
T 1y0p_A 490 NEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLYGAGEVT-GGVHGANRLGGNAISDIITFGRLAGEEAAKYS 568 (571)
T ss_dssp CSSCEEEEEEEEEEEEECCEEEBCTTCEEECTTSCEEEEEEECSTTE-ESSSTTSCCTTHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEEEEEEEEECCCEEECCCCEEECCCCCCCCCCEECEECC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78988999975345575477279999669889998837737660767-78867987836768999999999999999975
Q ss_pred H
Q ss_conf 1
Q 006532 487 K 487 (641)
Q Consensus 487 ~ 487 (641)
+
T Consensus 569 ~ 569 (571)
T 1y0p_A 569 K 569 (571)
T ss_dssp -
T ss_pred H
T ss_conf 3
No 10
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=1.00 E-value=1 Score=405.66 Aligned_cols=376 Identities=30% Similarity=0.447 Sum_probs=299.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECC-------CCCCCHHHHHHHHHHHCCC
Q ss_conf 632126899996079999999988669-86999715899995101358602104-------9978899999999995657
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGAY 150 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~-------~~~d~~~~~~~~~~~~g~~ 150 (641)
....+||+|||+|++|+++|+.|++.| +|+|+|+....+|.+.++.|+++... +..++++.++.+++..+.+
T Consensus 123 ~~~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~ 202 (572)
T 1d4d_A 123 VKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRN 202 (572)
T ss_dssp CCEECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTT
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCEEECCCCHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf 77879989989779999999999988993899966898886426539846716999999748999999999999986288
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC--CCHHHHHHHHHHHHHCCCCCEEEC
Q ss_conf 889999999997829999999985992035899973223579820131443168--727999999999998199948985
Q 006532 151 LCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAAD--MTGREIERALLEAVVSDPNISVFE 228 (641)
Q Consensus 151 ~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~--~~g~~~~~~l~~~~~~~~gv~i~~ 228 (641)
..+++++..+.+.+.+.++|+.++|++|.. ....+++.++|.....+ ..+..+...|.+.+.+. ||+|++
T Consensus 203 ~~~~~~v~~~~~~~~~~i~~l~~~Gv~~~~-------~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~-gv~i~~ 274 (572)
T 1d4d_A 203 INDPELVKVLANNSSDSIDWLTSMGADMTD-------VGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKR-GTDIRL 274 (572)
T ss_dssp CSCHHHHHHHHHTHHHHHHHHHHHTCCCCE-------EECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHT-TCEEES
T ss_pred CCCHHHHHHHHHCCHHHHHHHHHCCCCCCC-------CCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHC-CCEEEE
T ss_conf 798999999997529999999965992221-------245577767835756898877799999999999975-986995
Q ss_pred CEEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCCC------C-C-----CCCCCCCCCCCHHHHHH
Q ss_conf 4278887744899975599999996589949999827799969977867------9-8-----99776667332168888
Q 006532 229 HHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI------Y-P-----STTNPLVATGDGMAMAH 296 (641)
Q Consensus 229 ~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~------~-~-----~~~~~~~~~G~g~~~a~ 296 (641)
++.|++|+.++++ +|.||.+.+ .+|+...|.|+.||+|||+++.. | + .+.+++.++|||+.|++
T Consensus 275 ~t~v~~l~~~~~g---~v~GV~~~~-~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~p~~~~~~~~~~~~~tGdgi~~a~ 350 (572)
T 1d4d_A 275 NSRVVRILEDASG---KVTGVLVKG-EYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVAL 350 (572)
T ss_dssp SEEEEEEEEC--C---CEEEEEEEE-TTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCCBSSCTTCSSHHHHHHH
T ss_pred CCEEEEEEECCCC---EEEEEEEEE-CCCCEEEEECCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 6887898987998---089999995-799689997699999389976599999985854447776699998658999999
Q ss_pred HCCCEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 65995605333223420003899988987777763124202117996898199885544453222248635899999999
Q 006532 297 RAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQ 376 (641)
Q Consensus 297 ~aGa~l~~~e~~~~~p~~~~~~g~~~~p~~~~~~~~~~~~~~~~~g~~~vn~~g~rf~~~~~~~~~~~~~~~~~~~~~~~ 376 (641)
++|+.+.+|+++|+||+..... .+++++.+++++++++|.+|+||++ |+.+|+.++++++.+
T Consensus 351 ~~Ga~~~~~~~~q~~p~~~~~~------------~~l~~~~~~~~g~i~vn~~G~RF~~------E~~~~~~~~~ai~~~ 412 (572)
T 1d4d_A 351 QAGAATRDLQYIQAHPTYSPAG------------GVMITEAVRGNGAIVVNREGNRFMN------EITTRDKASAAILQQ 412 (572)
T ss_dssp HTTBCEECTTCEEEEEEEETTT------------TEECCHHHHHTTCEEECTTSCCCSC------TTSCHHHHHHHHHTS
T ss_pred HCCCEEECCCCEEEECCCCCCC------------CCCCHHHHCCCCEEEECCCCCCCCC------CCCCHHHHHHHHHHC
T ss_conf 8398081787223735647875------------6443344256863899999988348------888774899999848
Q ss_pred HHHCCCCEEEEECCCCCH----HH-----HHHHCHHHHHHHHHCCC--------------------CC-----------C
Q ss_conf 993699759991789996----58-----99458109999998199--------------------99-----------9
Q 006532 377 LKKRNEKYVLLDISHKPT----EK-----ILSHFPNIAAECLKYGL--------------------DI-----------T 416 (641)
Q Consensus 377 ~~~~~~~~v~ld~~~~~~----~~-----~~~~~~~~~~~~~~~G~--------------------d~-----------~ 416 (641)
. ++..++++|...... +. +..+++++.+++.+.|+ |+ .
T Consensus 413 ~--~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~ti~ela~~~gi~~~~l~~tv~~yn~~~~~g~D~~fg~~~~~~~i~ 490 (572)
T 1d4d_A 413 K--GESAYLVFDDSIRKSLKAIEGYVHLNIVKEGKTIEELAKQIDVPAAELAKTVTAYNGFVKSGKDAQFERPDLPRELV 490 (572)
T ss_dssp G--GGCEEEEECHHHHTTCTHHHHHHHTTCCEEESSHHHHHHHHTCCHHHHHHHHHHHHHHC-CCCCTTTCCSCCCCCCC
T ss_pred C--CCEEEEEECHHHHHHCCCHHHHHHCCCEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 6--98099998867854030067785379489838899999881989999999999999998639970339877777477
Q ss_pred CCC---EEEEEEECCCCCCEEECCCCC-------CCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 997---447420021147348689997-------3268702325446778889982032316899999999989989853
Q 006532 417 SQP---IPVVPAAHYMCGGVRAGLQGE-------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 486 (641)
Q Consensus 417 ~~~---i~v~p~~~~~~GGi~vD~~~~-------T~ipGLyAaGe~~~gg~~Ga~rl~g~~l~~a~v~G~~Ag~~aa~~~ 486 (641)
+.| +++.|..|+++|||+||+++| |+|||||||||++ +|+||+||++|++|++++|||++||+++++++
T Consensus 491 ~~Pfya~~v~p~~~~t~GGl~id~~~~Vl~~~g~~~I~GLyAaGe~~-~g~~g~~~l~g~sl~~~~vfGr~Ag~~aa~~~ 569 (572)
T 1d4d_A 491 VAPFYALEIAPAVHHTMGGLVIDTKAEVKSEKTAKPITGLYAAGEVT-GGVHGANRLGGNAISDIVTYGRIAGASAAKFA 569 (572)
T ss_dssp SSSEEEEEEEEEEEEECCEEEBCTTCEEEBSSSSSEEEEEEECSTTE-ESTTTTSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEECCCCEECCCEEECCCCEEECCCCCCCCCCEEECEECC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89979999775520307783799998387589994258826771546-67888987716768999999999999999976
Q ss_pred H
Q ss_conf 1
Q 006532 487 K 487 (641)
Q Consensus 487 ~ 487 (641)
+
T Consensus 570 ~ 570 (572)
T 1d4d_A 570 K 570 (572)
T ss_dssp C
T ss_pred H
T ss_conf 3
Done!