RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 006532
(641 letters)
>gnl|CDD|215436 PLN02815, PLN02815, L-aspartate oxidase.
Length = 594
Score = 1143 bits (2959), Expect = 0.0
Identities = 460/588 (78%), Positives = 499/588 (84%), Gaps = 3/588 (0%)
Query: 57 SPVSENWKSLRT--VPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAE 114
S ++ K + S L D S KYFDF VIGSG+AGL YALEVA++GTVA+ITK E
Sbjct: 2 SAIAATRKPIGAERASSASRLDDESTKYFDFLVIGSGIAGLRYALEVAEYGTVAIITKDE 61
Query: 115 PHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAI 174
PHESNTNYAQGGVSAVL PSDSVESHM+DTIVAGA+LCD+ETVRVVCTEGP+R++ELIA+
Sbjct: 62 PHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVRVVCTEGPERVKELIAM 121
Query: 175 GASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 234
GASFD GEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAV +DPNI+ FEHHFAID
Sbjct: 122 GASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAID 181
Query: 235 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAM 294
LLT+ DG VCHG D L+ T EVVRFISKVTLLASGGAGHIYPSTTNPLVATGDG+AM
Sbjct: 182 LLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGIAM 241
Query: 295 AHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFM 354
AHRAQAV+SNMEFVQFHPTALADEGLPIKP K REN+FLITEAVRGDGGILYNL ERFM
Sbjct: 242 AHRAQAVVSNMEFVQFHPTALADEGLPIKPAKARENAFLITEAVRGDGGILYNLAGERFM 301
Query: 355 PLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLD 414
PLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKP E+ILSHFPNIAAECLK GLD
Sbjct: 302 PLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPREEILSHFPNIAAECLKRGLD 361
Query: 415 ITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVF 474
IT QPIPVVPAAHYMCGGVR GLQGETNV+GLY AGEVACTGLHGANRLASNSLLEALVF
Sbjct: 362 ITKQPIPVVPAAHYMCGGVRTGLQGETNVQGLYAAGEVACTGLHGANRLASNSLLEALVF 421
Query: 475 ARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRY 534
ARRAVQPSIDH D+SA+ W R V P +L +VM IL T VRKELQ IMW Y
Sbjct: 422 ARRAVQPSIDHMARALRDVSAAAAWARPVAPTALADSVMDEILEWTAVVRKELQRIMWNY 481
Query: 535 VGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSAL 594
VGIVRST L+TAE +++ELEAEWE LF HGW+ T VGLEACEMRNLFC AKLVVSSAL
Sbjct: 482 VGIVRSTERLETAERKLEELEAEWEAILFRHGWKPTMVGLEACEMRNLFCVAKLVVSSAL 541
Query: 595 ARHESRGLHYMVDFPHVEENKRLPTIILPSLV-NCTWSSRQLHKLPVC 641
AR ESRGLHY D+P + E++R PT+I PS+ TWSSR LH+
Sbjct: 542 ARKESRGLHYTTDYPELVESERKPTVIFPSVPTAGTWSSRSLHRPKRG 589
>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
Length = 518
Score = 605 bits (1562), Expect = 0.0
Identities = 244/543 (44%), Positives = 317/543 (58%), Gaps = 43/543 (7%)
Query: 87 VIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIV 146
+IGSG+AGL AL +A V V+TK ES++ +AQGG++A L DS E H+ DT+
Sbjct: 12 IIGSGLAGLTAALSLAPSFRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLA 71
Query: 147 AGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMT 206
AGA LCD+E V + +E P+ I LI +G FDR EDG LHL REGGHS RI+HAAD T
Sbjct: 72 AGAGLCDEEAVEFIVSEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADAT 131
Query: 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKV 266
G+EI ALL+ V + PNI+V E A+DL+ GV LN E+ F +K
Sbjct: 132 GKEIMTALLKKVRNRPNITVLEGAEALDLIIE---DGIGVAGVLVLN-RNGELGTFRAKA 187
Query: 267 TLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKK 326
+LA+GG G +Y TTNP +TGDG+AMA RA A ++++EFVQFHPTAL
Sbjct: 188 VVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADLEFVQFHPTAL---------YI 238
Query: 327 TRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVL 386
+ +FLI+EAVRG+G IL N ERFMP Y R ELAPRDVVAR+ID ++K+ V
Sbjct: 239 PQRRAFLISEAVRGEGAILVNEDGERFMPDYHPRGELAPRDVVARAIDAEMKRGGAD-VF 297
Query: 387 LDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGL 446
LDISH P + FP I A CLK G+D T +PIPVVPAAHY GG+ G T++ GL
Sbjct: 298 LDISHIPGDFFERRFPTIYAACLKAGIDPTREPIPVVPAAHYTMGGIAVDANGRTSIPGL 357
Query: 447 YVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDH---KKSTSIDLSASNWWTRTV 503
Y GEVACTGLHGANRLASNSLLE LVF +RA + + L + + V
Sbjct: 358 YAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGRLAPAPREAPTLPVRDDYEENV 417
Query: 504 VPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLF 563
+ H+ R EL+ +MWRYVGIVR+ L+ A R++ L+ E + Y
Sbjct: 418 LLA-------HD--------RHELRRLMWRYVGIVRTAKGLERAIRRLEPLQQENDEYA- 461
Query: 564 EHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIILP 623
+ RNL A L+ +AL R ESRG H+ +D+P + ++
Sbjct: 462 --NFRV--------SNRNLALVALLIARAALLRTESRGAHFRLDYPDTLPEAQRRILVTL 511
Query: 624 SLV 626
+
Sbjct: 512 NDA 514
>gnl|CDD|236374 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
Length = 536
Score = 595 bits (1536), Expect = 0.0
Identities = 252/548 (45%), Positives = 327/548 (59%), Gaps = 31/548 (5%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQ 142
D +IGSG AGL AL +A+H VAV++K E +T YAQGG++AVL +DS+ESH++
Sbjct: 9 CDVLIIGSGAAGLSLALRLAEHRRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVE 68
Query: 143 DTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGN----LHLAREGGHSHHR 198
DT++AGA LCD++ VR + + ++ LI G F E N HL REGGHSH R
Sbjct: 69 DTLIAGAGLCDEDAVRFIAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRR 128
Query: 199 IVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT--LDGPDAVCHGVDTLNVET 256
I+HAAD TG+ ++ L+E + PNI+V E H AIDL+T+ L P G LN
Sbjct: 129 ILHAADATGKAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNK 188
Query: 257 QEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALA 316
+ V +K +LA+GGA +Y TTNP +A+GDG+AMA RA ++NMEF QFHPT L
Sbjct: 189 ERVETIRAKFVVLATGGASKVYLYTTNPDIASGDGIAMAWRAGCRVANMEFNQFHPTCL- 247
Query: 317 DEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQ 376
P + SFLITEA+RG+G L RFMP +DERAELAPRD+VAR+ID +
Sbjct: 248 -----YHP---QARSFLITEALRGEGAYLKLPDGTRFMPDFDERAELAPRDIVARAIDHE 299
Query: 377 LKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAG 436
+K+ V LDISHKP + I HFP I CL+ G+DIT +PIPVVPAAHY CGGV
Sbjct: 300 MKRLGADCVYLDISHKPADFIRQHFPTIYERCLELGIDITKEPIPVVPAAHYTCGGVMVD 359
Query: 437 LQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSAS 496
L G T++ GLY GEV+ TGLHGANR+ASNSLLE LV+ R A + + + +
Sbjct: 360 LHGRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRLPKAPMPPTLP 419
Query: 497 NWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEA 556
W V + HN EL+ MW YVGIVR+T L+ A RI L+
Sbjct: 420 AWDESRVTDSDEEVVIQHNW--------HELRLFMWDYVGIVRTTKRLERALHRIRLLQQ 471
Query: 557 EWETYLFEHGWEQTF-VGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENK 615
E + Y F V E+RNL A+L+V A+ R ESRGLHY +D+P +
Sbjct: 472 EIDEYY------ANFRVSNNLLELRNLVQVAELIVRCAMERKESRGLHYTLDYPELLPEA 525
Query: 616 RLPTIILP 623
PTI+ P
Sbjct: 526 G-PTILSP 532
>gnl|CDD|233018 TIGR00551, nadB, L-aspartate oxidase. L-aspartate oxidase is the B
protein, NadB, of the quinolinate synthetase complex.
Quinolinate synthetase makes a precursor of the pyridine
nucleotide portion of NAD. This model identifies
proteins that cluster as L-aspartate oxidase (a
flavoprotein difficult to separate from the set of
closely related flavoprotein subunits of succinate
dehydrogenase and fumarate reductase) by both UPGMA and
neighbor-joining trees. The most distant protein
accepted as an L-aspartate oxidase (NadB), that from
Pyrococcus horikoshii, not only clusters with other NadB
but is just one gene away from NadA [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pyridine
nucleotides].
Length = 488
Score = 496 bits (1279), Expect = e-171
Identities = 237/527 (44%), Positives = 305/527 (57%), Gaps = 41/527 (7%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQ 142
D VIGSG AGL AL +A G V V++KA E N+ YAQGG++AVL +DS++SH++
Sbjct: 3 CDVVVIGSGAAGLSAALALADQGRVIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVE 62
Query: 143 DTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHA 202
DT+ AGA +CD E V V ++ ++ L+ G FDR E G+ L REGGHS+ RI+HA
Sbjct: 63 DTLAAGAGICDREAVEFVVSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHA 122
Query: 203 ADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRF 262
AD TGRE+ L++ ++ PNI + E A+DLL GV N ET E
Sbjct: 123 ADATGREVITTLVKKALNHPNIRIIEGENALDLLIE----TGRVVGVWVWNRETVETCHA 178
Query: 263 ISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPI 322
+LA+GGAG +Y TTNP ++TGDG+A+A RA + ++EF QFHPTAL
Sbjct: 179 --DAVVLATGGAGKLYQYTTNPKISTGDGIALAWRAGVRVRDLEFNQFHPTAL------Y 230
Query: 323 KPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNE 382
KP+ FLITEAVRG+G L + RFM + R ELAPRD+VAR+ID ++K+
Sbjct: 231 KPRARY---FLITEAVRGEGAYLVDRDGTRFMADFHPRGELAPRDIVARAIDHEMKRGGA 287
Query: 383 KYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETN 442
V LD S E FP I A+CL G+D T +PIPVVPAAHY CGG+ G T
Sbjct: 288 DCVFLDASGI--EAFRQRFPTIYAKCLGAGIDPTREPIPVVPAAHYTCGGISVDDHGRTT 345
Query: 443 VRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRT 502
V GLY GEVACTGLHGANRLASNSLLE LVF A + I + + D+S S W
Sbjct: 346 VPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAE-DISRRPPYASDISTSPPWDE- 403
Query: 503 VVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYL 562
P+S + + EL+S MW Y GIVR T SL+ A R+ L+ E + Y
Sbjct: 404 --PRSENPDDRVVLQHN----MSELRSFMWDYAGIVRLTKSLERALRRLVMLQQEIDEYE 457
Query: 563 FEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 609
+RNL AKL+ SAL R ESRG H+ +D+P
Sbjct: 458 ----------------LRNLVQVAKLITRSALMREESRGAHFRLDYP 488
>gnl|CDD|236102 PRK07804, PRK07804, L-aspartate oxidase; Provisional.
Length = 541
Score = 492 bits (1270), Expect = e-169
Identities = 240/534 (44%), Positives = 299/534 (55%), Gaps = 48/534 (8%)
Query: 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQ 142
D V+GSGVAGL AL + G V V+TKA + +T +AQGG++AVL P DS E+H+
Sbjct: 18 DVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVA 77
Query: 143 DTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHA 202
DT+VAGA LCD + VR + EGP +REL+A+GA FD DG L REGGHS RIVHA
Sbjct: 78 DTLVAGAGLCDPDAVRSLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHA 137
Query: 203 A-DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNV--ETQE- 258
D TG E++RAL AV +DP + + EH A+DLLT DG AV GV TL+V E
Sbjct: 138 GGDATGAEVQRALDAAVRADP-LDIREHALALDLLT--DGTGAVA-GV-TLHVLGEGSPD 192
Query: 259 ---VVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTAL 315
V + +LA+GG G +Y +TTNP +TGDG+A+A RA A +S++EFVQFHPT L
Sbjct: 193 GVGAVH--APAVVLATGGLGQLYAATTNPAGSTGDGVALALRAGAAVSDLEFVQFHPTVL 250
Query: 316 ADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDD 375
LI+EAVRG+G IL + RFM A+LAPRDVVA++ID
Sbjct: 251 ------FLGPAAGGQRPLISEAVRGEGAILVDAQGNRFMAGVHPLADLAPRDVVAKAIDR 304
Query: 376 QLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRA 435
++K + +V LD E FP I A C G+D QPIPV PAAHY CGGV
Sbjct: 305 RMKATGDDHVYLDARG--IEGFARRFPTITASCRAAGIDPVRQPIPVAPAAHYSCGGVVT 362
Query: 436 GLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSA 495
+ G T+V GLY AGEVACTG+HGANRLASNSLLE LV RA +A
Sbjct: 363 DVYGRTSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGA-----------AAAA 411
Query: 496 SNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELE 555
P++ L R ELQ M R G++RS L A D L
Sbjct: 412 HA--AAAGRPRATPAVGPEPGL-LPALDRAELQRAMTRGAGVLRSAAGLARAA---DRLA 465
Query: 556 AEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 609
A + G E NL A+ +V++ALAR ESRG H+ DFP
Sbjct: 466 AGAPA--------RVVPGRADWEDTNLTLVARALVAAALARTESRGCHWREDFP 511
>gnl|CDD|236010 PRK07395, PRK07395, L-aspartate oxidase; Provisional.
Length = 553
Score = 477 bits (1230), Expect = e-163
Identities = 217/567 (38%), Positives = 303/567 (53%), Gaps = 56/567 (9%)
Query: 81 KYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESH 140
FD V+GSG AGL AL + H V +ITK S +++AQGG++A + P DS + H
Sbjct: 8 SQFDVLVVGSGAAGLYAALCLPSHLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLH 67
Query: 141 MQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIV 200
+DT+ AGA LCD E VR + + P+ I L+ +G +FDR +L L E HS R++
Sbjct: 68 YEDTLKAGAGLCDPEAVRFLVEQAPEAIASLVEMGVAFDR-HGQHLALTLEAAHSRPRVL 126
Query: 201 HAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVV 260
HAAD TGR I L E V+ PNI + A+ L L+ C G+ L +
Sbjct: 127 HAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLW--LEPETGRCQGISLLYQGQITWL 184
Query: 261 RFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGL 320
R + +LA+GG G ++ TTNP V+TGDG+A+A RA A + ++EF QFHPTAL G
Sbjct: 185 R--AGAVILATGGGGQVFAQTTNPAVSTGDGVALAWRAGAQLRDLEFFQFHPTALTKPGA 242
Query: 321 PIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKR 380
P FLI+EAVRG+G L + RF Y ELAPRDVV+R+I L+K
Sbjct: 243 P---------RFLISEAVRGEGAHLVDAQGRRFAFDYHPAGELAPRDVVSRAIFSHLQKT 293
Query: 381 NEK----YVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAG 436
+V LD+ P E+I FPNI C K+G+D+ +PIPV PAAHY GGV
Sbjct: 294 ATDPATAHVWLDLRPIPAERIRRRFPNIIRVCQKWGIDVFQEPIPVAPAAHYWMGGVVTD 353
Query: 437 LQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFAR--RAVQPSIDH-----KKST 489
L +T++ GLY GE A TG+HGANRLASNSLLE LVFA ++ I+
Sbjct: 354 LNNQTSIPGLYAVGETASTGVHGANRLASNSLLECLVFAAQLAQLELPIEPPASPDLPPI 413
Query: 490 SIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEW 549
S + AS W N + + +R+EL ++W+ GI R +L+ A
Sbjct: 414 SFIIDASQW---------------KNEQEQIQRIRQELPELVWQSAGICREADTLERAIA 458
Query: 550 RIDELEAEW---------------ETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSAL 594
++++ + + +T F + + L A E RNL A L++ SAL
Sbjct: 459 QVEQWQQQLAALPLSQFLANLPPGQTVSFNGPDAEQQLRLWA-ETRNLLDIAYLILKSAL 517
Query: 595 ARHESRGLHYMVDFPHVEENKRLPTII 621
R ESRG HY +D+P + ++ T++
Sbjct: 518 FRTESRGGHYRLDYPQTDPAWQVHTLV 544
>gnl|CDD|236147 PRK08071, PRK08071, L-aspartate oxidase; Provisional.
Length = 510
Score = 444 bits (1145), Expect = e-150
Identities = 217/536 (40%), Positives = 292/536 (54%), Gaps = 51/536 (9%)
Query: 87 VIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIV 146
+IGSG+A L A E+ V +ITK SN++ AQGG++A + DS H +DT+V
Sbjct: 8 IIGSGIAALTVAKELCHEYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLV 67
Query: 147 AGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHA-ADM 205
AG + ++ VR + EGP I+ELI G FD E G LHL +EG H RI+HA D
Sbjct: 68 AGCHHNNERAVRYLVEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDA 127
Query: 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISK 265
TG+ + LL+ +V P+++V E IDL+ + C GV T + E + +
Sbjct: 128 TGKNLLEHLLQELV--PHVTVVEQEMVIDLIIE----NGRCIGVLTKDSEGKLKRYYADY 181
Query: 266 VTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPK 325
V +LASGG G +Y T+N TGDG+AMA+RA A + ++EF+QFHPT L G
Sbjct: 182 V-VLASGGCGGLYAFTSNDKTITGDGLAMAYRAGAELVDLEFIQFHPTMLYANG------ 234
Query: 326 KTRENSFLITEAVRGDGGILYNLGMERFM----PLYDERAELAPRDVVARSIDDQLKKRN 381
L++EAVRG+G +L N RFM PL D LAPRDVVAR+I ++L
Sbjct: 235 ---RCVGLVSEAVRGEGAVLINEDGRRFMMGIHPLAD----LAPRDVVARAIHEELLSGE 287
Query: 382 EKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGET 441
+ V L+IS + FP I+A C K G+DI ++ IPVVP AH++ GGV+ L GET
Sbjct: 288 K--VYLNISSIQNFE--ERFPTISALCEKNGVDIETKRIPVVPGAHFLMGGVKTNLDGET 343
Query: 442 NVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTR 501
++ GLY GEVACTG+HGANRLASNSLLE LVF +RA + I K + + +
Sbjct: 344 SIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAE-HILTKATKPRLNPFAEKEKK 402
Query: 502 TVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTA-EWRIDELEAEWET 560
+V L TKE E+Q M +YVGIVR+ SL A W
Sbjct: 403 FIVLNHL----------PTKE---EIQEKMMKYVGIVRTEQSLSEAKRWLEKYGVRNMIL 449
Query: 561 YLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKR 616
E+ E+ ++ AKL+V SAL R ESRG HY D+PH +
Sbjct: 450 DHDALTNEEI-------ELSHMLTVAKLIVVSALQRTESRGGHYRSDYPHRNWRGK 498
>gnl|CDD|236036 PRK07512, PRK07512, L-aspartate oxidase; Provisional.
Length = 513
Score = 425 bits (1094), Expect = e-143
Identities = 204/526 (38%), Positives = 267/526 (50%), Gaps = 58/526 (11%)
Query: 87 VIGSGVAGLCYALEVAKHGTVAVITKAEP--HESNTNYAQGGVSAVLCPSDSVESHMQDT 144
++G G+AGL AL++A V V++ A P +++ +AQGG++A L P DS H DT
Sbjct: 14 IVGGGLAGLMAALKLAPR-PVVVLSPA-PLGEGASSAWAQGGIAAALGPDDSPALHAADT 71
Query: 145 IVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAA- 203
+ AGA LCD ++ E P I +L+ +G FDR DG L L E HS RIVH
Sbjct: 72 LAAGAGLCDPAVAALITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGG 131
Query: 204 DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFI 263
D G I RAL+ AV + P+I+V E A LL D AV GV L V
Sbjct: 132 DGAGAAIMRALIAAVRATPSITVLEGAEARRLLV--DD-GAVA-GV--LAATAGGPVVLP 185
Query: 264 SKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIK 323
++ +LA+GG G +Y TTNP A G G+A+A RA AVI++ EFVQFHPTA+ P
Sbjct: 186 ARAVVLATGGIGGLYAVTTNPAGAFGQGLALAARAGAVIADPEFVQFHPTAIDIGRDPAP 245
Query: 324 PKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEK 383
L TEA+RG+G IL N ERFM AELAPRDVVAR++ ++ +
Sbjct: 246 ---------LATEALRGEGAILINEDGERFMADIHPGAELAPRDVVARAVFAEIA--AGR 294
Query: 384 YVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNV 443
LD + FP + A C G+D QPIPV PAAHY GG+ G +++
Sbjct: 295 GAFLDARAALGAHFATRFPTVYAACRSAGIDPARQPIPVAPAAHYHMGGIAVDADGRSSL 354
Query: 444 RGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTV 503
GL+ AGEVA TGLHGANRLASNSLLEA+VFA RA + D++ +
Sbjct: 355 PGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAE-----------DIAGT---PAAA 400
Query: 504 VPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLF 563
+R IM R+VG++R L+ A + LEA
Sbjct: 401 AAPLSAAAAPALDPADLALLRP----IMSRHVGVLRDADGLRRAIAALLPLEA------- 449
Query: 564 EHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 609
G + A L+ +ALAR ESRG H+ DFP
Sbjct: 450 ---------GAGPA--ADPATVALLIAVAALAREESRGAHFRTDFP 484
>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and conversion].
Length = 562
Score = 404 bits (1040), Expect = e-134
Identities = 212/561 (37%), Positives = 287/561 (51%), Gaps = 62/561 (11%)
Query: 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-----CP 133
+ FD VIG G AGL A+E A+ G VA+++KA P +T AQGG++A L
Sbjct: 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVE 63
Query: 134 SDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGG 193
DS E H DT+ G L D + V E P+ + EL G F R EDG ++ R GG
Sbjct: 64 GDSPELHFYDTVKGGDGLGDQDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGG 123
Query: 194 HSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLN 253
HS R AAD TG E+ L E ++ I +F+ +F +DLL G GV +
Sbjct: 124 HSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGGG---VAGVVARD 180
Query: 254 VETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPT 313
+ T E+ F +K +LA+GGAG +YP TTN + TGDG+AMA+RA A + +MEFVQFHPT
Sbjct: 181 LRTGELYVFRAKAVILATGGAGRLYPYTTNAHIGTGDGVAMAYRAGAPLIDMEFVQFHPT 240
Query: 314 ALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD---ERAELAPRDVVA 370
L G LITEAVRG+GGIL N ERFM Y + ELAPRDVV+
Sbjct: 241 GLVGSG------------ILITEAVRGEGGILLNKDGERFMERYGYAPKYKELAPRDVVS 288
Query: 371 RSIDDQLK------KRNEKYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVV 423
R+I +++ YV LD+ H E++ P I K+ G+D +PIPV
Sbjct: 289 RAILMEIREGRGVDGPGGDYVYLDLRHLGKEELEERLPGIRELAKKFAGIDPVKEPIPVR 348
Query: 424 PAAHYMCGGVRA-GLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPS 482
P HY GG+ + ET + GL+ AGE A HGANRL NSLL+ +VF R A + +
Sbjct: 349 PTVHYTMGGIPTNTGRVETKIPGLFAAGEAAGVSHHGANRLGGNSLLDLVVFGRIAGEAA 408
Query: 483 IDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRR-----TKEVRKELQSIMWRYVGI 537
++ K S AS +LRR ++R+ELQ +M VGI
Sbjct: 409 AEYAKEKSGSPPASA-VEAER-------ERFDALLRRGGDENPAQIREELQEVMGDNVGI 460
Query: 538 VRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGL---------EACEMRNLFCCAKL 588
R+ L+ A +++L+ E + +A E+ N+ A+
Sbjct: 461 FRNEEGLEKA---LEKLKELRERL-----KDIRVTDKSELFNTDLRDALELGNMLDVAEA 512
Query: 589 VVSSALARHESRGLHYMVDFP 609
V +SALAR ESRG HY D+P
Sbjct: 513 VAASALARTESRGAHYREDYP 533
>gnl|CDD|235758 PRK06263, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 543
Score = 401 bits (1033), Expect = e-133
Identities = 201/532 (37%), Positives = 289/532 (54%), Gaps = 26/532 (4%)
Query: 84 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESN-TNYAQGGVSAVLCPSDSVESHMQ 142
D +IGSG AG A+E + V +++K +S T A+GG +AVL P DS E H +
Sbjct: 9 DVLIIGSGGAGARAAIEAERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFE 68
Query: 143 DTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHA 202
DT+ GAYL D + V ++ E P R+++L GA FDR EDG + GG S +R +A
Sbjct: 69 DTMKGGAYLNDPKLVEILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYA 128
Query: 203 ADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRF 262
D TG E+ L+E ++ + I + E AI L+ + G L++ E+
Sbjct: 129 GDRTGHEMMMGLMEYLIKE-RIKILEEVMAIKLIVD---ENREVIGAIFLDLRNGEIFPI 184
Query: 263 ISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPI 322
+K T+LA+GGAG +YP T+NP+ TGDG A+A+RA A + +ME VQFHPT + +
Sbjct: 185 YAKATILATGGAGQLYPITSNPIQKTGDGFAIAYRAGAELIDMEMVQFHPTGM------V 238
Query: 323 KPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD-ERAELAPRDVVARSIDDQLKK-- 379
P R L+TEAVRG+GGILYN ERFM YD ER EL+ RDVVAR+I ++++
Sbjct: 239 YPYSGR--GILVTEAVRGEGGILYNKNGERFMKRYDPERMELSTRDVVARAIYTEIQEGR 296
Query: 380 -RNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQ 438
N V LD++H P E I + + L G+DI +P+ V P AH+ GG+R
Sbjct: 297 GTNHGGVYLDVTHLPDEVIEEKLETMLEQFLDVGVDIRKEPMEVAPTAHHFMGGIRINED 356
Query: 439 GETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNW 498
ETN+ GL+ GEVA G+HGANRL N+L + VF A + + + ++ + N
Sbjct: 357 CETNIPGLFACGEVA-GGVHGANRLGGNALADTQVFGAIAGKSAAKNAENN--EFKKVNR 413
Query: 499 WTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEW 558
+ + N ++ EL+ MW YV IVR+ L+ A I+EL+ +
Sbjct: 414 SVEEDIARIKSEIKFLNGSINPYDLIDELKKTMWDYVSIVRNEKGLKKALEEINELKEKL 473
Query: 559 ETYLFEHGWEQTFVGL-EACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 609
+ V +A E+ N+ A+LV+ SAL R ESRG HY D+P
Sbjct: 474 KDLKVN-----GIVDFNKALELENMILVAELVIKSALLRKESRGAHYREDYP 520
>gnl|CDD|233582 TIGR01812, sdhA_frdA_Gneg, succinate dehydrogenase or fumarate
reductase, flavoprotein
subunitGram-negative/mitochondrial subgroup. This model
represents the succinate dehydrogenase flavoprotein
subunit as found in Gram-negative bacteria,
mitochondria, and some Archaea. Mitochondrial forms
interact with ubiquinone and are designated EC 1.3.5.1,
but can be degraded to 1.3.99.1. Some isozymes in E.
coli and other species run primarily in the opposite
direction and are designated fumarate reductase [Energy
metabolism, Aerobic, Energy metabolism, Anaerobic,
Energy metabolism, TCA cycle].
Length = 541
Score = 398 bits (1024), Expect = e-132
Identities = 196/527 (37%), Positives = 265/527 (50%), Gaps = 51/527 (9%)
Query: 107 VAVITKAEPHESNTNYAQGGVSAVL---CPSDSVESHMQDTIVAGAYLCDDETVRVVCTE 163
AVI+K P S+T AQGG++A L P DS E H DT+ YL D + V +C E
Sbjct: 2 TAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEYMCQE 61
Query: 164 GPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPN 223
P I EL G F R DG + GGHS R +AAD TG + L E +
Sbjct: 62 APKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKL-G 120
Query: 224 ISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTN 283
+S F +FA+DL+ D GV +++T E+V F +K +LA+GG G IY +TTN
Sbjct: 121 VSFFNEYFALDLIHD----DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYKTTTN 176
Query: 284 PLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGG 343
+ TGDGMAMA RA + +MEFVQFHPT L G+ LITE RG+GG
Sbjct: 177 AHINTGDGMAMALRAGVPLKDMEFVQFHPTGLYPSGI------------LITEGCRGEGG 224
Query: 344 ILYNLGMERFMPLYD-ERAELAPRDVVARSIDDQLKK------RNEKYVLLDISHKPTEK 396
L N ERFM Y E+ ELAPRDVV+R++ ++++ YV LD+ H EK
Sbjct: 225 YLVNKNGERFMERYAPEKMELAPRDVVSRAMWTEIREGRGVGSPPGDYVYLDLRHLGEEK 284
Query: 397 ILSHFPNIAAECLKY-GLDITSQPIPVVPAAHYMCGGVR--AGLQGETNVRGLYVAGEVA 453
I P I + G+D +PIPV P AHY GG+ + + V+GL+ AGE A
Sbjct: 285 IEERLPQIRELAKYFAGVDPVKEPIPVRPTAHYSMGGIPTDVICETRSIVKGLFAAGECA 344
Query: 454 CTGLHGANRLASNSLLEALVFARRA--------VQPSIDHKKSTSIDLSASNWWTRTVVP 505
C +HGANRL NSLLE +VF R A + + A +V
Sbjct: 345 CVSVHGANRLGGNSLLELVVFGRIAGEAAAEYAAKTGNPAADIEEEAVKAEEALIDLLVE 404
Query: 506 KSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWET-YLFE 564
++ G V ++R+EL M VGI R+ L+ A I+EL ++ + +
Sbjct: 405 RNGGERV--------AKIREELGDTMDDNVGIFRTEELLKKAVDEIEELRERYKNVRIND 456
Query: 565 HG--WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 609
+ LEA E+ N+ A++V + AL R ESRG H D+P
Sbjct: 457 KSKVFNTDL--LEALELGNMLDLAEVVAAGALNRKESRGAHAREDYP 501
>gnl|CDD|180442 PRK06175, PRK06175, L-aspartate oxidase; Provisional.
Length = 433
Score = 374 bits (963), Expect = e-124
Identities = 163/406 (40%), Positives = 246/406 (60%), Gaps = 22/406 (5%)
Query: 80 VKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVES 139
Y D ++GSGVAGL AL + K + +++K + +E NT AQGG+S D + S
Sbjct: 2 NLYADVLIVGSGVAGLYSALNLRKDLKILMVSKGKLNECNTYLAQGGISVARNKDD-ITS 60
Query: 140 HMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRI 199
++DT+ AG Y + E V+++ E + I +LI +G +FD+ E L +EG HS +RI
Sbjct: 61 FVEDTLKAGQYENNLEAVKILANESIENINKLIDMGLNFDKDEKE-LSYTKEGAHSVNRI 119
Query: 200 VHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEV 259
VH D TG+++E+ LL+ V NI++ E+ + +D++ D C G + ++ +
Sbjct: 120 VHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEN----DNTCIG--AICLKDNKQ 173
Query: 260 VRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEG 319
+ SKVT+LA+GG G ++ ++TN + TGDG+A+A R I +++++Q HPTA +E
Sbjct: 174 INIYSKVTILATGGIGGLFKNSTNQRIITGDGIAIAIRNNIKIKDLDYIQIHPTAFYEE- 232
Query: 320 LPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKK 379
FLI+E+VRG+GG L N ERF+ EL PRDVV ++I +++KK
Sbjct: 233 ------TIEGKKFLISESVRGEGGKLLNSKGERFV------DELLPRDVVTKAILEEMKK 280
Query: 380 RNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQG 439
YV LDI+ + + + FP I ECLK G+DIT IPV PA HY GG++ L
Sbjct: 281 TGSNYVYLDITFLDKDFLKNRFPTIYEECLKRGIDITKDAIPVSPAQHYFMGGIKVDLNS 340
Query: 440 ETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDH 485
+T+++ LY GEV+CTG+HGANRLASNSLLE LVF++R + I+
Sbjct: 341 KTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAE-KINS 385
>gnl|CDD|235689 PRK06069, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 577
Score = 355 bits (913), Expect = e-115
Identities = 196/560 (35%), Positives = 276/560 (49%), Gaps = 58/560 (10%)
Query: 82 YFDFSVIGSGVAGLCYALEVAKHG----TVAVITKAEPHESNTNYAQGGVSAVLCPS--D 135
+D ++GSG+AGL A+ A+ +VAV++K +P S++ A+GG +AVL P D
Sbjct: 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGD 64
Query: 136 SVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS 195
S + H DT+ +L D + V V E P+ IR L G + R DG + GG S
Sbjct: 65 SFDLHAYDTVKGSDFLADQDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMS 124
Query: 196 HHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVE 255
R AAD TG I L + NI ++ HF L+ + V GV ++++
Sbjct: 125 FPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFVTSLIVE----NGVFKGVTAIDLK 180
Query: 256 TQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTAL 315
E F +K ++A+GGAG +Y TT TGDG+A+A+RA + +MEFVQFHPT L
Sbjct: 181 RGEFKVFQAKAGIIATGGAGRLYGFTTYAHSVTGDGLAIAYRAGIPLKDMEFVQFHPTGL 240
Query: 316 ADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERAELAPRDVVARSI- 373
G+ LITEA RG+GG L N ERFM Y ++ ELAPRDVV+R+I
Sbjct: 241 VPSGI------------LITEAARGEGGYLINKEGERFMKRYAPQKMELAPRDVVSRAIM 288
Query: 374 DDQLKKRNEK------YVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVPAA 426
+ ++ R K YV LD+ H EKI P I KY G+D ++PIPV PAA
Sbjct: 289 TEIMEGRGFKHESGLCYVGLDLRHLGEEKINERLPLIREIAKKYAGIDPVTEPIPVRPAA 348
Query: 427 HYMCGGVRAGLQGET------NVRGLYVAGEVACTGLHGANRLASNSLLEALVFAR---- 476
HY GG+ + G VRGL+ AGE A +HGANRL SNS E LV+ R
Sbjct: 349 HYTMGGIHTDVYGRVLTADGEWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGE 408
Query: 477 ----RAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMW 532
A++ + ++ K G + E+R+EL IM
Sbjct: 409 QAAEYALKRPAPSSPVEKLAEKEEKRIFDKLLKKEGGEP--------SYEIRRELNDIMD 460
Query: 533 RYVGIVRSTTSLQTAEWRIDEL-EAEWETYLFEHG--WEQTFVGLEACEMRNLFCCAKLV 589
+ GI R + L A +I +L E + + + +A E+ + A++V
Sbjct: 461 KNFGIFRDESGLAEALKKIKKLRERYKNVRIEDKSRIYNTDLK--DALELDGMLDLAEVV 518
Query: 590 VSSALARHESRGLHYMVDFP 609
AL R ESRG HY +D+P
Sbjct: 519 AIGALLRTESRGAHYRLDYP 538
>gnl|CDD|236185 PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 583
Score = 346 bits (890), Expect = e-111
Identities = 194/560 (34%), Positives = 282/560 (50%), Gaps = 58/560 (10%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESH 140
+D ++G+G AG+ A+E AV+TK P S+T AQGG+ A L D+ E H
Sbjct: 6 YDVVIVGAGGAGMRAAIEAGPRARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWH 65
Query: 141 MQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSH---- 196
DT+ G YL D + ++ E D + +L +G F+R +G + R GGH+
Sbjct: 66 TFDTVKGGDYLVDQDAAEIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGK 125
Query: 197 ---HRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLN 253
R +AAD TG I + L + V + F + +DLL T V GV
Sbjct: 126 APVRRACYAADRTGHMILQTLYQNCVKH-GVEFFNEFYVLDLLLTETPSGPVAAGVVAYE 184
Query: 254 VETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPT 313
+ T E+ F +K + A+GG+G +Y +T+N TGDGM + R + +MEF QFHPT
Sbjct: 185 LATGEIHVFHAKAVVFATGGSGRVYKTTSNAHTLTGDGMGIVFRKGLPLEDMEFHQFHPT 244
Query: 314 ALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-----AELAPRDV 368
LA GL I LI+EA RG+GGIL N ERFM ER +LAPRD+
Sbjct: 245 GLA--GLGI----------LISEAARGEGGILRNAEGERFM----ERYAPTIKDLAPRDI 288
Query: 369 VARSIDDQLKK-----RNEKYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPV 422
VARS+ ++++ N+ YV LD++H E + + P+I Y G+D +P+PV
Sbjct: 289 VARSMVLEVREGRGAGPNKDYVYLDLTHLGEEVLEAKLPDITEFARTYLGVDPVKEPVPV 348
Query: 423 VPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFAR 476
P AHY GG+ + GE T V GLY AGE AC +HGANRL +NSLL+ VF R
Sbjct: 349 YPTAHYAMGGIPTTVDGEVLRDNTTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGR 408
Query: 477 RAVQPSIDHKKSTS-IDLSASNWWTRTVVPKSLGCNVMHNILRRT-KE----VRKELQSI 530
RA + ++ + +DL + P+++ + ++L E +R ELQ
Sbjct: 409 RAGIAAAEYARGADFVDLPEN--------PEAMVVEWVEDLLSEHGNERVADIRGELQQS 460
Query: 531 MWRYVGIVRSTTSLQTAEWRIDELEAEWETY-LFEHGWEQTFVGLEACEMRNLFCCAKLV 589
M + R+ +L+ A I L+ ++ + + G LEA E+ L A++
Sbjct: 461 MDNNASVFRTEETLKQALTDIHALKERYKRITVQDKGKRFNTDLLEAIELGFLLDLAEVT 520
Query: 590 VSSALARHESRGLHYMVDFP 609
V AL R ESRG H D+P
Sbjct: 521 VVGALNRKESRGGHAREDYP 540
>gnl|CDD|130875 TIGR01816, sdhA_forward, succinate dehydrogenase, flavoprotein
subunit, E. coli/mitochondrial subgroup. Succinate
dehydrogenase and fumarate reductase are homologous
enzymes reversible in principle but favored under
different circumstances. This model represents a
narrowly defined clade of the succinate dehydrogenase
flavoprotein subunit as found in mitochondria, in
Rickettsia, in E. coli and other Proteobacteria, and in
a few other lineages. However, This model excludes all
known fumarate reductases. It also excludes putative
succinate dehydrogenases that appear to diverged before
the split between E. coli succinate dehydrogenase and
fumarate reductase [Energy metabolism, TCA cycle].
Length = 565
Score = 343 bits (881), Expect = e-110
Identities = 194/539 (35%), Positives = 261/539 (48%), Gaps = 63/539 (11%)
Query: 107 VAVITKAEPHESNTNYAQGGVSAVL--CPSDSVESHMQDTIVAGAYLCDDETVRVVCTEG 164
A +TK P S+T AQGG+SA L D+ HM DT+ +L D + + +C +
Sbjct: 8 TACVTKLFPTRSHTVAAQGGISAALGNMEEDNWRWHMYDTVKGSDWLGDQDAIEYMCKQA 67
Query: 165 PDRIRELIAIGASFDRGEDGNLHLAREGGHSH--------HRIVHAADMTGREIERALLE 216
P+ + EL +G F R EDG ++ GGH+ R AAD TG I L +
Sbjct: 68 PEAVLELEHMGMPFSRTEDGKIYQRPFGGHTRDFGKGGAAERACAAADRTGHAILHTLYQ 127
Query: 217 AVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276
+ + S F +FA+DLL DG C GV +ET E+ RF +K +LA+GG G
Sbjct: 128 QNLKA-DTSFFNEYFALDLLME-DGE---CRGVIAYCLETGEIHRFRAKAVVLATGGYGR 182
Query: 277 IYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITE 336
IY STTN TGDG M RA + +MEFVQFHPT +A G LITE
Sbjct: 183 IYFSTTNAHTLTGDGTGMVTRAGLPLQDMEFVQFHPTGIAGAGC------------LITE 230
Query: 337 AVRGDGGILYNLGMERFMPLYDERA-ELAPRDVVARSIDDQLKK-----RNEKYVLLDIS 390
RG+GGIL N ERFM Y A +LA RDVV+RS+ ++++ N+ +V LD+
Sbjct: 231 GCRGEGGILINANGERFMERYAPTAKDLASRDVVSRSMTLEIREGRGVGPNKDHVYLDLD 290
Query: 391 HKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGE--------- 440
H E + P I+ + G+D PIPV+P HY GG+ G+
Sbjct: 291 HLGPEVLEGRLPGISETARTFAGVDPVKDPIPVLPTVHYNMGGIPTNYHGQVLRDGNGND 350
Query: 441 TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRA-------VQPSIDHKKSTSIDL 493
V GLY AGE AC +HGANRL +NSLL+ +VF R A +P D K
Sbjct: 351 QIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYAKPGSDVKPMPPNAG 410
Query: 494 SASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDE 553
S + + G V +R ELQ M + G+ R+ LQ +I
Sbjct: 411 EESVMRLDKLRFATGGERV--------AALRLELQRSMQNHAGVFRTGEVLQKGVEKISA 462
Query: 554 LEAEWE-TYLFEHG--WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 609
L+ ++ + + W V EA E++NL CA+ SA AR ESRG H DFP
Sbjct: 463 LKERYKNVKINDKSKVWNTDLV--EALELQNLLECAEATAVSAEARKESRGAHAREDFP 519
>gnl|CDD|180814 PRK07057, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 591
Score = 316 bits (812), Expect = e-100
Identities = 196/571 (34%), Positives = 284/571 (49%), Gaps = 68/571 (11%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL--CPSDSVES 139
FD ++G+G +G+ +L++A+ G +VAV++K P S+T AQGG+ A L D+
Sbjct: 13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHY 72
Query: 140 HMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHH-- 197
H DTI +L D + + +C E P+ + EL G FDR DG ++ GGH+ +
Sbjct: 73 HFYDTIKGSDWLGDQDAIEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYG 132
Query: 198 -----RIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTL 252
R AAD TG + L + V+ F A+DL+ DG GV L
Sbjct: 133 EKPVQRACAAADRTGHALLHTLYQQNVA-AKTQFFVEWMALDLIRDADGD---VLGVTAL 188
Query: 253 NVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHP 312
+ET +V +K TL A+GGAG I+ ++TN + TGDG+ MA RA + +MEF QFHP
Sbjct: 189 EMETGDVYILEAKTTLFATGGAGRIFAASTNAFINTGDGLGMAARAGIPLQDMEFWQFHP 248
Query: 313 TALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVAR 371
T +A G+ LITE VRG+GGIL N ERFM Y +LAPRD V+R
Sbjct: 249 TGVAGAGV------------LITEGVRGEGGILRNKDGERFMERYAPTLKDLAPRDFVSR 296
Query: 372 SIDDQLKK-----RNEKYVLLDISHKPTEKILSHFPNIAAECLKYG-LDITSQPIPVVPA 425
S+D ++K+ N +VLLD++H E I+ P+I LK+ +D +PIPVVP
Sbjct: 297 SMDQEIKEGRGCGPNGDHVLLDLTHLGAETIMKRLPSIREIALKFANVDCIKEPIPVVPT 356
Query: 426 AHYMCGGVRAGLQG---ETN------VRGLYVAGEVACTGLHGANRLASNSLLEALVFAR 476
HY GG+ + G T+ V G Y GE +C +HGANRL +NSLL+ +VF R
Sbjct: 357 IHYQMGGIPTNIHGQVVGTSRDHKEPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGR 416
Query: 477 RAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRR------------TKEVR 524
A +DH K K L + L R ++V
Sbjct: 417 AAGNHIVDHVKKQH-------------EHKPLPADAADFSLARLAKLDKSTSGEYAQDVA 463
Query: 525 KELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWET-YLFEHGWEQTFVGLEACEMRNLF 583
++++ M ++ G+ R+ L +I L E +L + +EA E+ NL
Sbjct: 464 NDIRATMQKHAGVFRTQALLDEGVEQILALAERVENIHLKDKSKVFNTARVEALEVANLI 523
Query: 584 CCAKLVVSSALARHESRGLHYMVDFPHVEEN 614
A+ + SA AR ESRG H D+ H ++
Sbjct: 524 EVARATMVSAAARKESRGAHAHSDYEHRDDE 554
>gnl|CDD|240286 PTZ00139, PTZ00139, Succinate dehydrogenase [ubiquinone]
flavoprotein subunit; Provisional.
Length = 617
Score = 310 bits (796), Expect = 3e-97
Identities = 190/572 (33%), Positives = 278/572 (48%), Gaps = 76/572 (13%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL--CPSDSVES 139
+D V+G+G AGL AL + + G A I+K P S+T AQGG++A L D
Sbjct: 30 YDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRW 89
Query: 140 HMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHH-- 197
H DT+ +L D + ++ +C E P + EL + G F R +DG ++ GG S
Sbjct: 90 HAYDTVKGSDWLGDQDAIQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFG 149
Query: 198 ------RIVHAADMTGREIERALLEAVVSDP---NISVFEHHFAIDLLTTLDGPDAVCHG 248
R AAD TG A+L + + + F +FA+DL+ DG C G
Sbjct: 150 KGGQAYRCAAAADRTGH----AMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGE---CRG 202
Query: 249 VDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFV 308
V +++E + RF + T++A+GG G Y S T+ TGDG AM RA + ++EFV
Sbjct: 203 VIAMSMEDGSIHRFRAHYTVIATGGYGRAYFSCTSAHTCTGDGGAMVSRAGLPLQDLEFV 262
Query: 309 QFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRD 367
QFHPT + G LITE RG+GGIL N ERFM Y A +LA RD
Sbjct: 263 QFHPTGIYGAGC------------LITEGCRGEGGILRNSEGERFMERYAPTAKDLASRD 310
Query: 368 VVARSIDDQLKKR-----NEKYVLLDISHKPTEKILSHFPNIAAECLKY--GLDITSQPI 420
VV+R++ ++ + N+ ++ LD++H P E + P I +E K G+D+T +PI
Sbjct: 311 VVSRAMTIEILEGRGCGPNKDHIYLDLTHLPPETLHERLPGI-SETAKIFAGVDVTKEPI 369
Query: 421 PVVPAAHYMCGGVRAGLQGET----------NVRGLYVAGEVACTGLHGANRLASNSLLE 470
PV+P HY GG+ + + V GL AGE AC +HGANRL +NSLL+
Sbjct: 370 PVLPTVHYNMGGIPTNWKTQVLTQRNGDDDKIVPGLLAAGEAACASVHGANRLGANSLLD 429
Query: 471 ALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLG---CNVMHNIL-----RRTKE 522
+VF R A ++ K PK G + I T +
Sbjct: 430 IVVFGRAAANTVMEILKPGRPQPDL---------PKDAGEASIARLDKIRHNKGDISTAQ 480
Query: 523 VRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVG----LEACE 578
+RK +Q M ++ + R SLQ +I E+ ++++ + +++ V +E E
Sbjct: 481 IRKRMQRTMQKHAAVFRIGESLQEGVEKIKEIYSDFK-DVKIK--DKSLVWNTDLIETLE 537
Query: 579 MRNLFCCAKLVVSSALARHESRGLHYMVDFPH 610
+ NL AK + SA AR ESRG H DFP
Sbjct: 538 LENLLTQAKQTILSAEARKESRGAHARDDFPE 569
>gnl|CDD|180567 PRK06452, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 566
Score = 302 bits (776), Expect = 5e-95
Identities = 190/564 (33%), Positives = 285/564 (50%), Gaps = 55/564 (9%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC----PSDSV 137
+D VIG G+AGL A E+A G VAVI+K P S++ A+GG++A + P+D+
Sbjct: 6 YDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNP 65
Query: 138 ESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHH 197
+ DT+ G YL D + ++ + + + L GA F+R DG + + GG ++
Sbjct: 66 DYMTYDTVKGGDYLVDQDAAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYP 125
Query: 198 RIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQ 257
R D TG + L E S N+ + F++DL+T + G+ + ++T
Sbjct: 126 RTRFVGDKTGMALLHTLFERT-SGLNVDFYNEWFSLDLVTD----NKKVVGIVAMQMKTL 180
Query: 258 EVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALAD 317
F +K +LA+GG G +Y TTN + TGDG +A RA A + + EFVQFHPTAL
Sbjct: 181 TPFFFKTKAVVLATGGMGMLYRHTTNSYINTGDGFGIALRAGAALKDPEFVQFHPTAL-- 238
Query: 318 EGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERAELAPRDVVARSIDDQ 376
+ LI+EA RG+GGIL N+ ERFM Y ++ +LAPRD+V+R+I +
Sbjct: 239 ----------YPSDVLISEAARGEGGILKNVKGERFMTKYAPKKLDLAPRDIVSRAIITE 288
Query: 377 LKKRN---EKYVLLDISHKPTEKILSHFPNIAAECLKY--GLDITSQPIPVVPAAHYMCG 431
+++ YV LD++H E I +A E K G+D ++PIPV PA HY G
Sbjct: 289 IREGRGFPGGYVGLDLTHLGEEYIKERLA-LAVEAAKSFAGVDAFTEPIPVRPAQHYYMG 347
Query: 432 GVRAGLQGET-NVRGLYVAGEVACTGLHGANRLASNSLLEALVFAR---RAV-------- 479
G+ + G ++ GL+ AGE AC +HGANRL SNSLL+ LVF + R V
Sbjct: 348 GIDVDIDGRNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLKSNP 407
Query: 480 -QPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIV 538
P+ +++K + + V G + ++ ++L+ MW YVGI
Sbjct: 408 GNPTSNYEKEAEKVVDDA----YKFVKSESGVHF--------GQILEKLRDTMWDYVGIY 455
Query: 539 RSTTSLQTAEWRIDELEAEWET-YLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARH 597
R L A I++L Y+ + A E+RN+ A ++ SAL R
Sbjct: 456 RDEGGLLNAMSEINKLRGMISNMYVTDKSKVYNTEFFNALELRNMLDLALVIAKSALERK 515
Query: 598 ESRGLHYMVDFPHVEENKRLPTII 621
ESRG HY D+P ++N L I
Sbjct: 516 ESRGAHYRTDYPDRDDNNWLKHTI 539
>gnl|CDD|180319 PRK05945, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 575
Score = 302 bits (776), Expect = 1e-94
Identities = 190/573 (33%), Positives = 293/573 (51%), Gaps = 70/573 (12%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHESNTNYAQGGVSAVLC---PSDS 136
D ++G G+AG ALE+ + VAV+ K P S++ AQGG++A L P DS
Sbjct: 4 HDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDS 63
Query: 137 VESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSH 196
E+H DT+ YL D + V ++ E PD I +L +G F R DG + GGHSH
Sbjct: 64 WEAHAFDTVKGSDYLADQDAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSH 123
Query: 197 HRIVHAADMTGREIERALLEAVVSD---PNISVFEHHFAIDLLTTLDGPDAVCHGVDTLN 253
+R +AAD TG A+L +V++ +++++ + + L+ D GV +
Sbjct: 124 NRTCYAADKTGH----AILHELVNNLRRYGVTIYDEWYVMRLILE----DNQAKGVVMYH 175
Query: 254 VETQ--EVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFH 311
+ EVVR +K + A+GG G ++ +T+N +TGDG+AM A + +MEFVQFH
Sbjct: 176 IADGRLEVVR--AKAVMFATGGYGRVFNTTSNDYASTGDGLAMTAIAGLPLEDMEFVQFH 233
Query: 312 PTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERAELAPRDVVA 370
PT L G+ LI+EAVRG+G L N +RFM Y R ELAPRD+ +
Sbjct: 234 PTGLYPVGV------------LISEAVRGEGAYLINSEGDRFMADYAPSRMELAPRDITS 281
Query: 371 RSIDDQLK---------KRNEKYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPI 420
R+I +++ +V LD+ H EKI+S P E + G+D ++P+
Sbjct: 282 RAITLEIRAGRGINPDGSAGGPFVYLDLRHMGKEKIMSRVPFCWEEAHRLVGVDAVTEPM 341
Query: 421 PVVPAAHYMCGGV------RAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVF 474
PV P HY GG+ R + V G + AGE AC +HGANRL SNSLLE +V+
Sbjct: 342 PVRPTVHYCMGGIPVNTDGRVRRSADGLVEGFFAAGECACVSVHGANRLGSNSLLECVVY 401
Query: 475 ARR---AVQPSIDHKKSTSID----LSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKEL 527
RR A+ + +K +D L + + ++ +S R ++R++
Sbjct: 402 GRRTGAAIAEYVQGRKLPEVDEQRYLKEAKQRIQALLDQSGTY--------RINQLRQQF 453
Query: 528 QSIMWRYVGIVRSTTSLQTAEWRIDELEAEWE-TYLFEHG--WEQTFVGLEACEMRNLFC 584
Q M + G+ R+ +Q +I +L+ ++E YL + G W + EA E+R+L
Sbjct: 454 QDCMTDHCGVFRTEEIMQEGLEKIQQLKQQYEQIYLDDKGKCWNTELI--EALELRSLMV 511
Query: 585 CAKLVVSSALARHESRGLHYMVDFPHVEENKRL 617
+++++SAL R ESRG H D+P ++ L
Sbjct: 512 VGEIILTSALNRQESRGAHSREDYPQRDDQNFL 544
>gnl|CDD|236421 PRK09231, PRK09231, fumarate reductase flavoprotein subunit;
Validated.
Length = 582
Score = 293 bits (751), Expect = 6e-91
Identities = 175/568 (30%), Positives = 268/568 (47%), Gaps = 67/568 (11%)
Query: 84 DFSVIGSGVAGLCYALEVAK---HGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESH 140
D ++IG+G AGL A+ A+ + +A+I+K P S+T A+GG +AV DS + H
Sbjct: 6 DLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYH 65
Query: 141 MQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIV 200
DT+ G +LC+ + V P + +L G + R DG++++ R GG R
Sbjct: 66 FHDTVAGGDWLCEQDVVEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTW 125
Query: 201 HAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVV 260
AAD TG + L + + P I F+ HF +D+L D G+ +N+ +V
Sbjct: 126 FAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILVD----DGHVRGLVAMNMMEGTLV 181
Query: 261 RFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGL 320
+ + ++A+GGAG +Y TN + TGDGM MA+R + +MEFVQ+HPT L G+
Sbjct: 182 QIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAYRHGVPLRDMEFVQYHPTGLPGSGI 241
Query: 321 PIKPKKTRENSFLITEAVRGDGGIL-----------YNLGMERFMPLYDER---AELAPR 366
L+TE RG+GGIL Y LG E PL + + EL PR
Sbjct: 242 ------------LMTEGCRGEGGILVNKDGYRYLQDYGLGPE--TPLGEPKNKYMELGPR 287
Query: 367 DVVARSIDDQLKKRNE------KYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQP 419
D V+++ + +K N V LD+ H +K+ P I Y G+D +P
Sbjct: 288 DKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEP 347
Query: 420 IPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAV 479
IPV P AHY GG+ ET ++GL+ GE + GLHGANRL SNSL E +VF R A
Sbjct: 348 IPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAG 407
Query: 480 QPSIDH-KKSTSIDLSASNWWTRTVVPKSLGCNVMHNILR-----RTKEVRKELQSIMWR 533
+ + + + + +A + V + + ++ ++R E+ M
Sbjct: 408 EQAAERAATAGPGNEAALDAQAADVEQR------LKALVNQEGGENWAKIRDEMGLSMEE 461
Query: 534 YVGIVRSTTSLQTAEWRIDELEAEWETY-------LFEHGWEQTFVGLEACEMRNLFCCA 586
GI R+ +Q ++ EL+ ++ +F L E+ A
Sbjct: 462 GCGIYRTPELMQKTIDKLAELKERFKRVRITDTSSVFNTDL------LYTIELGYGLDVA 515
Query: 587 KLVVSSALARHESRGLHYMVDFPHVEEN 614
+ + SALAR ESRG H +D E +
Sbjct: 516 ECMAHSALARKESRGAHQRLDEGCTERD 543
>gnl|CDD|233302 TIGR01176, fum_red_Fp, fumarate reductase, flavoprotein subunit.
The terms succinate dehydrogenase and fumarate reductase
may be used interchangeably in certain systems. However,
a number of species have distinct complexes, with the
fumarate reductase active under anaerobic conditions.
This model represents the fumarate reductase
flavoprotein subunit from several such species in which
a distinct succinate dehydrogenase is also found. Not
all bona fide fumarate reductases will be found by this
model.
Length = 580
Score = 292 bits (749), Expect = 8e-91
Identities = 182/558 (32%), Positives = 268/558 (48%), Gaps = 47/558 (8%)
Query: 84 DFSVIGSGVAGLCYALEVAK---HGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESH 140
D +VIG+G AGL A+ A+ H VA+I+K P S+T A+GG +AV DS++ H
Sbjct: 5 DIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEH 64
Query: 141 MQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIV 200
DT+ G +LC+ + V E P + +L G + R DG +++ R GG R
Sbjct: 65 FHDTVSGGDWLCEQDVVEYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTW 124
Query: 201 HAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVV 260
AAD TG + L + ++ P I ++ F DLL D G+ + + +V
Sbjct: 125 FAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD----DGRVCGLVAIEMAEGRLV 180
Query: 261 RFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGL 320
++ +LA+GGAG +YP TN + TGDGMAMA R + +MEFVQ+HPT L G+
Sbjct: 181 TILADAVVLATGGAGRVYPFNTNGGIVTGDGMAMAFRHGVPLRDMEFVQYHPTGLPGTGI 240
Query: 321 PIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD------------ERAELAPRDV 368
L+TE RG+GGIL N R++ Y + EL PRD
Sbjct: 241 ------------LMTEGCRGEGGILVNKDGYRYLQDYGMGPETPVGEPKNKYMELGPRDK 288
Query: 369 VARSIDDQLKKRNE------KYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIP 421
V+++ + K N V LD+ H + + P I Y +D +PIP
Sbjct: 289 VSQAFWHEHNKGNTIDTPYGDVVYLDLRHLGEDLLDERLPFICELAKAYVHVDPVKEPIP 348
Query: 422 VVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQP 481
V P HY GG+ + ET ++GL+ GE A GLHGANRL SNSL E +VF RRA +
Sbjct: 349 VRPTVHYTMGGIETDINCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEA 408
Query: 482 SID----HKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGI 537
+ + H+KS + A RTV + L + + ++R E+ + M GI
Sbjct: 409 AAERAARHQKSNESAIRAQ---ARTVELR-LERLLSQHGGENWADIRAEMGATMESGCGI 464
Query: 538 VRSTTSLQTAEWRIDELEAEWETY-LFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALAR 596
R +Q ++ EL+ ++ + +H L E+ A+ +V SAL R
Sbjct: 465 YRDGPLMQKTIDKLAELQERFKRAGIDDHSRVFNTDLLYLIELGGGLDVAEAMVHSALRR 524
Query: 597 HESRGLHYMVDFPHVEEN 614
ESRG H +D E +
Sbjct: 525 KESRGAHQRLDEGCTERD 542
>gnl|CDD|180193 PRK05675, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 570
Score = 292 bits (748), Expect = 9e-91
Identities = 190/550 (34%), Positives = 274/550 (49%), Gaps = 63/550 (11%)
Query: 98 ALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC---PSDSVESHMQDTIVAGAYLCD 153
AL++A+ G AV+TK P S+T AQGG++ + P+D HM DT+ Y+ D
Sbjct: 4 ALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGD 63
Query: 154 DETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHH--------RIVHAADM 205
+ + +C+ GP+ + EL +G F R E G ++ GG S R AAD
Sbjct: 64 QDAIEYMCSVGPEAVFELEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADR 123
Query: 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISK 265
TG + L + + + + +A+DL+ DG AV GV + +ET E V SK
Sbjct: 124 TGHALLHTLYQGNLKN-GTTFLNEWYAVDLVKNQDG--AVV-GVIAICIETGETVYIKSK 179
Query: 266 VTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPK 325
T+LA+GGAG IY STTN L+ TGDG+ MA RA + ++E QFHPT +A G+
Sbjct: 180 ATVLATGGAGRIYASTTNALINTGDGVGMALRAGVPVQDIEMWQFHPTGIAGAGV----- 234
Query: 326 KTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRDVVARS-IDDQLKKR--- 380
L+TE RG+GG L N ERFM Y A +LA RDVVARS + + L
Sbjct: 235 -------LVTEGCRGEGGYLINKHGERFMERYAPNAKDLAGRDVVARSMVKEILAGNGCG 287
Query: 381 -NEKYVLLDISHKPTEKILSHFPNIAAECLKYG-LDITSQPIPVVPAAHYMCGGVRAGLQ 438
N+ +VLL + H E + S P I + +D PIPVVP HYM GGV +
Sbjct: 288 PNKDHVLLKLDHLGEEVLHSRLPGICELSKTFAHVDPVVAPIPVVPTCHYMMGGVATNIH 347
Query: 439 G----------ETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFAR-------RAVQP 481
G + + GL+ GEVAC +HGANRL NSLL+ +VF R +A++
Sbjct: 348 GQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKALKE 407
Query: 482 SIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRST 541
I+++ ++ D+ A+ + ++ G +V +R+ELQS M Y G+ R+
Sbjct: 408 GIEYRDASESDIDAALARLNKLNERTGGEDV--------AALRRELQSCMQNYFGVFRTG 459
Query: 542 TSLQTAEWRIDELEAEWETYLFEHGWEQTF--VGLEACEMRNLFCCAKLVVSSALARHES 599
+Q ++ +L Q F +EA E++NL A+ +A R ES
Sbjct: 460 EYMQKGIAQLADLRERIANVKINDK-SQAFNTARIEALELQNLLEVAEATAIAAEVRKES 518
Query: 600 RGLHYMVDFP 609
RG H DF
Sbjct: 519 RGAHAREDFE 528
>gnl|CDD|181594 PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 588
Score = 283 bits (725), Expect = 4e-87
Identities = 193/570 (33%), Positives = 283/570 (49%), Gaps = 68/570 (11%)
Query: 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPS--DS 136
V+ FD VIG+G AG+ AL++++ G + A+++K P S+T AQGG++ L + D+
Sbjct: 5 VREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDN 64
Query: 137 VESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSH 196
E HM DT+ Y+ D + + +C GP+ I EL +G F R +DG ++ GG S
Sbjct: 65 WEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSK 124
Query: 197 H-------RIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGV 249
+ R AAD TG + L + + + + ++F +A+DL+ DG AV G
Sbjct: 125 NFGGEQAARTAAAADRTGHALLHTLYQQNLKN-HTTIFSEWYALDLVKNQDG--AVV-GC 180
Query: 250 DTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQ 309
+ +ET EVV F ++ T+LA+GGAG IY STTN + TGDG+ MA RA + +ME Q
Sbjct: 181 TAICIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMALRAGVPVQDMEMWQ 240
Query: 310 FHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRDV 368
FHPT +A G+ L+TE RG+GG L N ERFM Y A +LA RDV
Sbjct: 241 FHPTGIAGAGV------------LVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDV 288
Query: 369 VARSIDDQLKK-RNEK-----YVLLDISHKPTEKILSHFPNIAAECLKYG-LDITSQPIP 421
VARSI ++++ R + L + H E + S P I + +D +PIP
Sbjct: 289 VARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIP 348
Query: 422 VVPAAHYMCGGVRAGLQG----------ETNVRGLYVAGEVACTGLHGANRLASNSLLEA 471
V+P HYM GG+ + G + V GL+ GE+AC +HGANRL NSLL+
Sbjct: 349 VIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDL 408
Query: 472 LVFARRA---VQPSIDH----KKSTSIDLSAS----NWWTRTVVPKSLGCNVMHNILRRT 520
+VF R A +Q S+ + ++ D+ AS N W ++ V
Sbjct: 409 VVFGRAAGLHLQESLAEQGALRDASESDIEASLARLNRWNNN---RNGEDPV-------- 457
Query: 521 KEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWE-TYLFEHGWEQTFVGLEACEM 579
++RK LQ M + R ++ + + + L + E +E E+
Sbjct: 458 -QIRKALQECMQNNFSVFREGDAMAKGLEELKVIRERLKNARLDDTSSEFNTQRIECLEL 516
Query: 580 RNLFCCAKLVVSSALARHESRGLHYMVDFP 609
NL A SA R ESRG H DFP
Sbjct: 517 DNLMETAYATAVSANFRTESRGAHSRFDFP 546
>gnl|CDD|177739 PLN00128, PLN00128, Succinate dehydrogenase [ubiquinone]
flavoprotein subunit.
Length = 635
Score = 282 bits (724), Expect = 2e-86
Identities = 192/574 (33%), Positives = 275/574 (47%), Gaps = 82/574 (14%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL--CPSDSVES 139
+D V+G+G AGL A+ +++HG A ITK P S+T AQGG++A L D
Sbjct: 51 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRW 110
Query: 140 HMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS---- 195
HM DT+ +L D + ++ +C E P + EL G F R EDG ++ GG S
Sbjct: 111 HMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFG 170
Query: 196 ----HHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDT 251
+R AAD TG + L + N F +FA+DL+ DG C GV
Sbjct: 171 KGGQAYRCACAADRTGHAMLHTLYGQAMKH-NTQFFVEYFALDLIMDSDG---ACQGVIA 226
Query: 252 LNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFH 311
LN+E + RF + T+LA+GG G Y S T+ TGDG AM RA + ++EFVQFH
Sbjct: 227 LNMEDGTLHRFRAHSTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFH 286
Query: 312 PTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRDVVA 370
PT + G LITE RG+GGIL N ERFM Y A +LA RDVV+
Sbjct: 287 PTGIYGAGC------------LITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVS 334
Query: 371 RSIDDQLKK-----RNEKYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVP 424
RS+ ++++ + ++ L ++H P E + P I+ + G+D+T +PIPV+P
Sbjct: 335 RSMTMEIREGRGVGPEKDHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLP 394
Query: 425 AAHYMCGGVRAGLQGE----------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVF 474
HY GG+ GE V GL AGE AC +HGANRL +NSLL+ +VF
Sbjct: 395 TVHYNMGGIPTNYHGEVVTIKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVF 454
Query: 475 AR-------RAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNI--LR------R 519
R +P K +PK G + + LR
Sbjct: 455 GRACANRVAEIAKPGEKQKP----------------LPKDAGEKTIAWLDKLRNANGSLP 498
Query: 520 TKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVG----LE 575
T ++R +Q +M + R+ +L+ IDE W+++ +++ + +E
Sbjct: 499 TSKIRLNMQRVMQNNAAVFRTQETLEEGCKLIDEA---WDSFHDVKVTDRSLIWNSDLIE 555
Query: 576 ACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 609
E+ NL A + + SA AR ESRG H DF
Sbjct: 556 TLELENLLINACITMHSAEARKESRGAHAREDFT 589
>gnl|CDD|236375 PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 598
Score = 279 bits (716), Expect = 1e-85
Identities = 187/583 (32%), Positives = 265/583 (45%), Gaps = 100/583 (17%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL--CPSDSVES 139
+D V+G+G AGL L +A+ G A ITK P S+T AQGG+SA L D
Sbjct: 13 YDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRW 72
Query: 140 HMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHH-- 197
HM DT+ +L D + + +C E P + EL G F R E+G ++ GG + +
Sbjct: 73 HMYDTVKGSDWLGDQDAIEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYG 132
Query: 198 ------RIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDT 251
R AAD TG I L + + N F +FA+DL+ VC GV
Sbjct: 133 KGPPAQRTCAAADRTGHAILHTLYQQSLKH-NAEFFIEYFALDLIMD---DGGVCRGVVA 188
Query: 252 LNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFH 311
N++ + RF + + +LA+GG G Y S T+ TGDG M RA + +MEFVQFH
Sbjct: 189 WNLDDGTLHRFRAHMVVLATGGYGRAYFSATSAHTCTGDGGGMVLRAGLPLQDMEFVQFH 248
Query: 312 PTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRDVVA 370
PT + G LITE RG+GG L N ERFM Y A +LA RDVV+
Sbjct: 249 PTGIYGAGC------------LITEGARGEGGYLTNSEGERFMERYAPSAKDLASRDVVS 296
Query: 371 RSIDDQLKK-----RNEKYVLLDISHKPTEKILSHFPNIAAECLKY--GLDITSQPIPVV 423
R++ ++++ + + ++ L + H E + P I +E K G+D+T +PIPV+
Sbjct: 297 RAMTIEIREGRGVGKKKDHIFLHLDHLDPEVLHERLPGI-SESAKIFAGVDVTKEPIPVL 355
Query: 424 PAAHYMCGGVRAGLQGE----------TNVRGLYVAGEVACTGLHGANRLASNSLLEALV 473
P HY GG+ GE V GL GE AC +HGANRL SNSL++ +V
Sbjct: 356 PTVHYNMGGIPTNYHGEVLTKTGDNPDAVVPGLMAVGEAACVSVHGANRLGSNSLIDLVV 415
Query: 474 FARRA-------VQPSIDHK--KSTSIDLSASNWWTRTVVPKSLGCNVMHNILR------ 518
F R A ++P H + D + + + LR
Sbjct: 416 FGRAAALRAAEVIKPGAPHPPLPKDACDKALDRF----------------DRLRHANGGT 459
Query: 519 RTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAE------------WETYLFEHG 566
T E+R ++Q M + R+ L+ +I E+ A W + L
Sbjct: 460 PTAELRLKMQRTMQEDAAVFRTGEVLEEGVEKISEVWAGLPDIKVTDRSLIWNSDL---- 515
Query: 567 WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 609
+E E+ NL A + + SA R ESRG H DFP
Sbjct: 516 -------VETLELDNLMAQAVVTMESAENRKESRGAHAREDFP 551
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family includes
members that bind FAD. This family includes the
flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 272 bits (697), Expect = 3e-85
Identities = 151/419 (36%), Positives = 190/419 (45%), Gaps = 58/419 (13%)
Query: 87 VIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCP-----SDSVESH 140
VIGSG+AGL ALE A+ G VAV+ K +P T ++ GG+ A+ P DS + H
Sbjct: 4 VIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGATAWSSGGIDALGTPPQGAGIDSPDLH 63
Query: 141 MQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGN-LHLAREGGHSHHRI 199
DT+ L D V P+ + L A+G F R + + L GG S
Sbjct: 64 PTDTLKGLDELADHPYVEAFVEAAPEAVDWLEALGVPFSRSTEDGHIDLRPLGGLS-ATW 122
Query: 200 VHAADM---------TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVD 250
D+ TG + LLE + I H A DL+ D GV
Sbjct: 123 RTPHDVADRRRGTLGTGHALLARLLEGALKRG-IDFQPRHPADDLIVE----DGRVTGVV 177
Query: 251 TLNVETQEVVRFISKV-TLLASGGAGH---------IYPSTTNPLVATGDGMAMAHRAQA 300
N VR + LLA+GG G Y TT P TGDG+A+A RA A
Sbjct: 178 VENRRNGREVRIRAIAGVLLATGGFGRNAELLLPAAGYADTTGPPANTGDGIALALRAGA 237
Query: 301 VISN--MEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD 358
+++ MEFVQFHPT+L I R S L+ EA+RG+GGIL N RFM
Sbjct: 238 ALTDDLMEFVQFHPTSL----PGI-----RLGSGLLIEALRGEGGILVNDDGRRFM---- 284
Query: 359 ERAELAPRDVVARSIDDQLKKRNEK-YVLLDISHK-PTEKILSHFPNIAAEC-LKYGLDI 415
ELA RDVV+R+I +V LD E + + P E +D
Sbjct: 285 --NELASRDVVSRAITRNEIDEGRGAHVYLDADGSLDAEGLKATLPAFNEEAIFGLDVDP 342
Query: 416 TSQPIPVVPAAHYMCGGVRAGLQGET------NVRGLYVAGEVACTGLHGANRLASNSL 468
+PIPV PA HY GGVR G + GLY AGEVAC G+HGANRL NSL
Sbjct: 343 YDRPIPVFPAQHYTMGGVRTDENGRVLDADGQPIPGLYAAGEVACGGVHGANRLGGNSL 401
>gnl|CDD|236101 PRK07803, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 626
Score = 278 bits (712), Expect = 7e-85
Identities = 194/597 (32%), Positives = 281/597 (47%), Gaps = 91/597 (15%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC---PSDSVE 138
+D VIG+G AGL A+E + G VAV+ K+ +++T A+GG +A + P D+ +
Sbjct: 9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQ 68
Query: 139 SHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHR 198
H +DT+ G +L + + E PDR+ EL GA FDR +DG + GGH++ R
Sbjct: 69 VHFRDTMRGGKFLNNWRMAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPR 128
Query: 199 IVHAADMTGREIERALLEAVVS------------DPNISVFEHHFAIDLLTTLDGPDAVC 246
+ H D TG E+ R L + +VS + I VF +LL DG +
Sbjct: 129 LAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLK--DG-GRIA 185
Query: 247 HGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNME 306
G E+ V F + +LA+GG G + T+N TGDG A+A RA A + NME
Sbjct: 186 -GAFGYWRESGRFVLFEAPAVVLATGGIGKSFKVTSNSWEYTGDGHALALRAGATLINME 244
Query: 307 FVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD-------- 358
FVQFHPT + + P + L+TE VRGDGG+L N +RFM Y
Sbjct: 245 FVQFHPTGM------VWPPSVK--GILVTEGVRGDGGVLKNSEGKRFMFDYIPDVFKGQY 296
Query: 359 ----ERA--------------ELAPRDVVARSIDDQLKK-RNEKY--VLLDI-SHKPTEK 396
E A EL PRD VAR+I+ ++K R + V LDI S P E+
Sbjct: 297 AETEEEADRWYKDNDNNRRPPELLPRDEVARAINSEVKAGRGSPHGGVYLDIASRLPAEE 356
Query: 397 ILSHFPNIAAECLKYG-LDITSQPIPVVPAAHYMCGGVRAGLQ-GETNVRGLYVAGEVAC 454
I P++ + + +DIT +P+ V P HY+ GGV G V GL+ AGE A
Sbjct: 357 IKRRLPSMYHQFKELADVDITKEPMEVGPTCHYVMGGVEVDPDTGAATVPGLFAAGECA- 415
Query: 455 TGLHGANRLASNSLLEALVFARRAVQPSIDHKKS---------TSIDLSASNWWTRTVVP 505
G+HG+NRL NSL + LVF RRA + D+ + ++D +A+
Sbjct: 416 GGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVRGLGSRPAVSEEAVD-AAAREALAPFER 474
Query: 506 KSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWE------ 559
+ N + ELQ M VGI+R ++ A ++ EL+
Sbjct: 475 PAGAEN--------PYTLHAELQQTMNDLVGIIRKEDEIEQALEKLAELKERAANVSVEG 526
Query: 560 TYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKR 616
+ GW A ++RN+ ++ V +AL R ESRG H D P ++ R
Sbjct: 527 HRQYNPGWHL------ALDLRNMLLVSECVARAALERTESRGGHTRDDHPGMDPEWR 577
>gnl|CDD|236259 PRK08401, PRK08401, L-aspartate oxidase; Provisional.
Length = 466
Score = 242 bits (620), Expect = 3e-73
Identities = 165/539 (30%), Positives = 240/539 (44%), Gaps = 90/539 (16%)
Query: 87 VIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIV 146
++G G+AGL A+ +AK G I +SN+ AQ G++ + DS+ +H+ DTI
Sbjct: 6 IVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIR 65
Query: 147 AGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMT 206
AG Y+ D+E V V ++ + L ++G F+ E EGGHS R+ + T
Sbjct: 66 AGKYINDEEVVWNVISKSSEAYDFLTSLGLEFEGNE-------LEGGHSFPRVFTIKNET 118
Query: 207 GREIERAL-LEAVVSDPN-ISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFIS 264
G+ I + L A N I F AI + +GV E+++F
Sbjct: 119 GKHIIKILYKHARELGVNFIRGFAEELAIK--------NGKAYGV----FLDGELLKF-- 164
Query: 265 KVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKP 324
T++A+GG ++ T + G + A A ++EFVQFHPT
Sbjct: 165 DATVIATGGFSGLFKFTAGSPLNLGTLIGDAVMKGAPARDLEFVQFHPTGFIG------- 217
Query: 325 KKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKY 384
+ ++LI+EAVRG G L ERF+ EL RD+VAR+I K + K
Sbjct: 218 ---KRGTYLISEAVRGAGAKLVTGDGERFV------NELETRDIVARAI--YRKMQEGKG 266
Query: 385 VLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVR 444
V LD + E FP I A K G+D + IPV P AHY GG+ T ++
Sbjct: 267 VFLDATG--IEDFKRRFPQIYAFLRKEGIDPSRDLIPVTPIAHYTIGGISVDTFYRTGIK 324
Query: 445 GLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVV 504
LY GE A G HGANRLASNSLLE +V + ++++ RT+
Sbjct: 325 NLYAIGEAASNGFHGANRLASNSLLECIV---------------SGLEVA------RTIS 363
Query: 505 ---PKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETY 561
PK +V ++ I+W + GIVRS SL+ +++ +EA+
Sbjct: 364 RERPKLREVKEPPYHGYELGDV-DSIREILWNHAGIVRSEESLREGLKKLEGIEAD---- 418
Query: 562 LFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTI 620
L AK V+ ALAR ESRG HY DFP + + P+
Sbjct: 419 ------------------PRLKLLAKGVLECALAREESRGAHYREDFPFMRKEFERPSF 459
>gnl|CDD|181507 PRK08626, PRK08626, fumarate reductase flavoprotein subunit;
Provisional.
Length = 657
Score = 246 bits (631), Expect = 7e-73
Identities = 183/588 (31%), Positives = 266/588 (45%), Gaps = 94/588 (15%)
Query: 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPS---- 134
+ Y D VIG+G+AGL A+ A+ G V++ S++ AQGG+ A L +
Sbjct: 3 IIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGE 62
Query: 135 -DSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGN-------- 185
D+ + H DT+ + CD E R+ P +REL A G + R G
Sbjct: 63 GDNEDVHFADTVKGSDWGCDQEVARMFVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGE 122
Query: 186 ------------LHLARE-GGHSHHRIVHAADMTGREIERALLEAV---VSDPNISVFEH 229
L AR+ GG R + AD TG +L AV + V +
Sbjct: 123 KVTITEKEEAHGLINARDFGGTKKWRTCYTADGTGH----TMLYAVDNEAIKLGVPVHDR 178
Query: 230 HFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATG 289
AI L+ DG C+G + T E+ +++K TL+A+GG G IY TTN ++ G
Sbjct: 179 KEAIALIH--DG--KRCYGAVVRCLITGELRAYVAKATLIATGGYGRIYKVTTNAVICEG 234
Query: 290 DGMAMAHRAQ-AVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNL 348
G A+A A + NME VQFHPTA+ G+ L+TE RGDGG+L +
Sbjct: 235 IGAAIALETGVAPLGNMEAVQFHPTAIVPSGI------------LVTEGCRGDGGLLRDK 282
Query: 349 GMERFMPLYD-ERAELAPRDVVARSIDDQLKK------RNEKYVLLDISHKPTEKILSHF 401
RFMP Y+ E+ ELA RDVV+R + + ++K ++ LDI + I ++
Sbjct: 283 DGYRFMPDYEPEKKELASRDVVSRRMTEHIRKGKGVKSPYGPHLWLDIRILGRKHIETNL 342
Query: 402 PNIAAECLKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGET-NVRGLYVAGEVACTGLHG 459
+ C + G+D IPV P HY GG+R GE+ ++GL+ AGE AC +HG
Sbjct: 343 REVQEICENFLGIDPAKDWIPVRPTQHYSMGGIRTNPTGESYGLKGLFSAGEAACWDMHG 402
Query: 460 ANRLASNSLLEALVFARRAVQPSI-DHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILR 518
NRL NSL E +V A V + D +++ + V K + + ++
Sbjct: 403 FNRLGGNSLAETVV-AGMIVGKYVADFCLGNELEIDTAL--VEKFVKKQQ--DRIDELIA 457
Query: 519 RTK-----EVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVG 573
E++ E+Q IM VGI R+ L+ A + EL+ L E +G
Sbjct: 458 GEGKENVFEIKNEMQEIMMEKVGIFRNGPELEKA---VKELQE-----LLE---RSKNIG 506
Query: 574 L------------EACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 609
L EA + + A V ALAR ESRG H D+P
Sbjct: 507 LKSKKRGANPELEEALRVPRMLKLALCVAYGALARTESRGAHAREDYP 554
>gnl|CDD|130870 TIGR01811, sdhA_Bsu, succinate dehydrogenase or fumarate reductase,
flavoprotein subunit, Bacillus subtilis subgroup. This
model represents the succinate dehydrogenase
flavoprotein subunit as found in the low-GC
Gram-positive bacteria and a few other lineages. This
enzyme may act in a complete or partial TCA cycle, or
act in the opposite direction as fumarate reductase. In
some but not all species, succinate dehydrogenase and
fumarate reductase may be encoded as separate isozymes
[Energy metabolism, TCA cycle].
Length = 603
Score = 207 bits (529), Expect = 7e-59
Identities = 147/580 (25%), Positives = 243/580 (41%), Gaps = 83/580 (14%)
Query: 87 VIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNTNYAQGGVSAVL---CPSDSVESHM 141
V+G+G+AG A ++A+ G P +++ AQGG++ + DS H
Sbjct: 3 VVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSPWRHF 62
Query: 142 QDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVH 201
DT+ G + + V+ + P+ I + A+G F R G L GG R +
Sbjct: 63 DDTVKGGDFRARESPVKRLAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQVSRTAY 122
Query: 202 AADMTGREIERALLEAV---VSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQE 258
A TG+++ AL A+ ++ + +E +D++ G+ N+ T E
Sbjct: 123 ARGQTGQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGN---RARGIIARNLVTGE 179
Query: 259 VVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADE 318
+ + +LA+GG G+++ +TN + + A+ A +N EF+Q HPTA+ +
Sbjct: 180 IETHSADAVILATGGYGNVFGKSTNAMNSNASAAWRAYEQGAYFANPEFIQIHPTAIPVD 239
Query: 319 GLPIKPKKTRENSFLITEAVRGDGGIL--------------------YNLGMERFMPLYD 358
G K R L++E++R DG I Y L ER P +
Sbjct: 240 G--TWQSKLR----LMSESLRNDGRIWTPKEKNDNRDPNTIPEDKRDYFL--ERRYPAF- 290
Query: 359 ERAELAPRDVVARSIDDQ-----LKKRNEKYVLLDISHKPTEKILSH-----FPNIAAEC 408
L PRD+ +R+I E V LD S E++ + N+
Sbjct: 291 --GNLVPRDIASRAIFQVCDAGKGVGPGENAVYLDFSDA-DERLGRKEIDAKYGNLFEMY 347
Query: 409 LKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNS 467
K+ G D P+ + PA HY GG+ TN+ GL+ AGE + HGANRL +NS
Sbjct: 348 EKFTGDDPYKVPMRIFPAVHYTMGGLWVDYDQMTNIPGLFAAGECDFSQ-HGANRLGANS 406
Query: 468 LLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKE----- 522
LL A+ A+ +I + +LS+ + +P+ L +E
Sbjct: 407 LLSAIADGYFALPFTIPN--YLGPELSSED------MPEDA--PEFQAALAEEQERFDRL 456
Query: 523 -----------VRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAE-WETYLFEHGWEQT 570
+ +EL IM G+ R+ L + +I EL W+ +++
Sbjct: 457 LKMRGDENPYYLHRELGEIMTENCGVSRNNEKLLKTDEKIRELRERFWKNIDIPGTTKES 516
Query: 571 FVGLE-ACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 609
LE A + + A+L+ AL R+ES G H+ +FP
Sbjct: 517 NQVLEFARRVADYLELAELMCLDALNRNESCGAHFRPEFP 556
>gnl|CDD|236319 PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 589
Score = 199 bits (507), Expect = 9e-56
Identities = 161/558 (28%), Positives = 254/558 (45%), Gaps = 62/558 (11%)
Query: 87 VIGSGVAGLCYALEVAKHGT-VAVITKAEPHESNTNYAQGGVSAVL---CPSDSVESHMQ 142
V+G G+AGL ++ A+ G V + + S++ AQGG++ + DS H
Sbjct: 8 VVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFD 67
Query: 143 DTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHA 202
DT+ G +L + V+ +C P I L +G F+R +G L R GG HHR A
Sbjct: 68 DTVYGGDFLANQPPVKAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFA 127
Query: 203 ADMTGREIERALLEAV---VSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEV 259
TG+++ AL E V ++ +E + L + + VC G+ ++ T E+
Sbjct: 128 GATTGQQLLYALDEQVRRYEVAGLVTKYEGW---EFLGAVLDDEGVCRGIVAQDLFTMEI 184
Query: 260 VRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEG 319
F + ++A+GG G I+ +TN + TG + ++ A +N EF+Q HPTA+ +
Sbjct: 185 ESFPADAVIMATGGPGIIFGKSTNSTINTGSAASRVYQQGAYYANGEFIQIHPTAIPGD- 243
Query: 320 LPIKPKKTRENSFLITEAVRGDGGILYNLG-------MERFMPLYDERAELAPRDVVARS 372
K R L++E+ RG+GG ++ +E P Y L PRD+ R
Sbjct: 244 -----DKLR----LMSESARGEGGRVWTYKDGKPWYFLEEKYPAY---GNLVPRDIATRE 291
Query: 373 I-----DDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVPAA 426
I + +L E V LD+SHK +++ I K+ G D P+ + PA
Sbjct: 292 IFDVCVEQKLGINGENMVYLDLSHKDPKELDIKLGGILEIYEKFTGDDPRKVPMKIFPAV 351
Query: 427 HYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEA----LVFARRAVQPS 482
HY GG+ TN+ GL+ AGE + HGANRL +NSLL A +V AV+
Sbjct: 352 HYSMGGLWVDYDQMTNIPGLFAAGECDYS-YHGANRLGANSLLSAIYGGMVAGPNAVE-Y 409
Query: 483 IDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRT-KE----VRKELQSIMWRYVGI 537
I ++ D+S+S + + NIL E + KEL M V +
Sbjct: 410 IKGLGKSADDVSSSVFEQALKQEQEK----FDNILSMDGTENAYVLHKELGEWMTDNVTV 465
Query: 538 VRSTTSLQTAEWRIDELEAEWE------TYLFEHGWEQTFVGLEACEMRNLFCCAKLVVS 591
VR L + +I EL ++ T + + Q ++ N+ A+++
Sbjct: 466 VRENDKLLETDEKIQELMERYKRISVNDTSRWSN---QGASFTR--QLWNMLELARVITI 520
Query: 592 SALARHESRGLHYMVDFP 609
AL R+ESRG HY +FP
Sbjct: 521 GALNRNESRGAHYKPEFP 538
>gnl|CDD|233583 TIGR01813, flavo_cyto_c, flavocytochrome c. This model describes a
family of redox proteins related to the succinate
dehydrogenases and fumarate reductases of E. coli,
mitochondria, and other well-characterized systems. A
member of this family from Shewanella frigidimarina
NCIMB400 is characterized as a water-soluble periplasmic
protein with four heme groups, a non-covalently bound
FAD, and essentially unidirectional fumarate reductase
activity. At least seven distinct members of this family
are found in Shewanella oneidensis, a species able to
use a wide variety of pathways for respiraton [Energy
metabolism, Electron transport].
Length = 439
Score = 150 bits (382), Expect = 1e-39
Identities = 136/469 (28%), Positives = 197/469 (42%), Gaps = 106/469 (22%)
Query: 84 DFSVIGSGVAGLCYALEVAKHGT--VAVITKAEPHESNTNYAQGGVSAVLCP-------S 134
D V+GSG AGL AL K G V ++ K N+ A GG++A
Sbjct: 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIE 60
Query: 135 DSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGH 194
DS E ++DT+ G + D + VR++ E D + L G L + GGH
Sbjct: 61 DSPELFIKDTLKGGRGINDPDLVRILAEESADAVDWLQD-GVGARLD-----DLIQLGGH 114
Query: 195 SHHR--IVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTL 252
S R +G EI + L + I + DL+ G V +
Sbjct: 115 SVPRAHRPTGGAASGAEIVQKLYKKAK-KEGIDTRLNSKVEDLIQDDQGT------VVGV 167
Query: 253 NVETQEVVRFI--SKVTLLASGGAG-------HIYPS-----TTNPLVATGDGMAMAHRA 298
V+ + +I +K +LA+GG G P+ +TN ATGDG+ MA +
Sbjct: 168 VVKGKGKGIYIKAAKAVVLATGGFGSNKEMIAKYDPTLKKLGSTNQPGATGDGLLMAEKI 227
Query: 299 QAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD 358
A + +M+++Q HPTA DEG FLI+EAVRG G IL N ERFM
Sbjct: 228 GAALVDMDYIQAHPTASPDEG-----------GFLISEAVRGYGAILVNKTGERFM---- 272
Query: 359 ERAELAPRDVVARSI------------DDQLKKR---NEKYVLLDISHK--PTEKILSHF 401
ELA RD V+ +I DD + K+ + Y L +++K E++ F
Sbjct: 273 --NELATRDTVSDAILAQPGKSAYLIFDDDVYKKAKKVDNYYRLGVAYKGDSLEELAKQF 330
Query: 402 PNIAAECLKYGL-----------------------DITSQPIPVV---PAAHYMCGGVRA 435
I A LK + D++ P + P H+ GGV+
Sbjct: 331 -GIPAAALKKTVKDYNDYVASGKDTPFGRPMDMPVDLSKSPYYAIKVTPGVHHTMGGVKI 389
Query: 436 GLQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRA 478
+ E + GL+ AGEV G+HGANRL N++ + +VF R A
Sbjct: 390 NTKAEVLDANGKPIPGLFAAGEVT-GGVHGANRLGGNAIADCIVFGRIA 437
>gnl|CDD|236054 PRK07573, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 640
Score = 114 bits (288), Expect = 1e-26
Identities = 133/560 (23%), Positives = 210/560 (37%), Gaps = 120/560 (21%)
Query: 123 AQGGVSAVLC---PSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFD 179
AQGG++A DSV DT+ G + + V + + I + +A G F
Sbjct: 78 AQGGINAAKNYQNDGDSVYRLFYDTVKGGDFRAREANVYRLAEVSVNIIDQCVAQGVPFA 137
Query: 180 RGEDGNLHLAREGGHSHHRIVHAADMTGREIERAL---LEAVVSDPNISVFEHHFAIDLL 236
R G L GG R +A TG+++ L ++ + ++ +DL+
Sbjct: 138 REYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYQALSRQIAAGTVKMYTRTEMLDLV 197
Query: 237 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAH 296
D G+ N+ T E+ R + +LA+GG G+++ +TN + + + AH
Sbjct: 198 VV----DGRARGIVARNLVTGEIERHTADAVVLATGGYGNVFYLSTNAMGSNATAIWRAH 253
Query: 297 RAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGIL----------- 345
+ A +N F Q HPT + G + K T L++E++R DG I
Sbjct: 254 KKGAYFANPCFTQIHPTCIPVSG-DYQSKLT-----LMSESLRNDGRIWVPKKKGDKRKP 307
Query: 346 ---------YNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKY--------VLLD 388
Y L ER P + L PRDV +R+ ++ + V LD
Sbjct: 308 NDIPEEERDYYL--ERRYPAF---GNLVPRDVASRAAKERC---DAGRGVGPTGLGVYLD 359
Query: 389 ----ISHKPTEKILSHFPNIAAECLKYG------LDIT-----SQPIPVVPAAHYMCGGV 433
I + I +YG IT P+ + PA HY GG+
Sbjct: 360 FADAIKRLGKDVIRE----------RYGNLFDMYERITGENPYETPMRIYPAVHYTMGGL 409
Query: 434 RAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALV-------------FARRAVQ 480
+ + GL+V GE + HGANRL +++L++ L A
Sbjct: 410 WVDYNLMSTIPGLFVIGEANFSD-HGANRLGASALMQGLADGYFVLPYTIGNYLADTIGT 468
Query: 481 PSI--DHKK--------STSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSI 530
P + DH + ID + RTV +EL I
Sbjct: 469 PKVSTDHPEFKEAEAEVQDRIDRLLNIKGKRTV-----------------DSFHRELGKI 511
Query: 531 MWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTF-VGLE-ACEMRNLFCCAKL 588
MW Y G+ R+ L+ A +I L E+ + G LE A + + +L
Sbjct: 512 MWDYCGMARNEEGLKKALEKIRALREEFWKNVRVPGSADELNQELEKAGRVADFLELGEL 571
Query: 589 VVSSALARHESRGLHYMVDF 608
+ AL R ES G H+ +
Sbjct: 572 MCRDALHREESCGGHFREEH 591
>gnl|CDD|180584 PRK06481, PRK06481, fumarate reductase flavoprotein subunit;
Validated.
Length = 506
Score = 113 bits (283), Expect = 2e-26
Identities = 118/468 (25%), Positives = 178/468 (38%), Gaps = 106/468 (22%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEP--------HESNTNYAQGGVSAVLCPS 134
+D ++G+G AG+ A+E G VI + P S N ++ +
Sbjct: 62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIA 121
Query: 135 DSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGH 194
DS + ++T+ G D +R I L ++G D L GG
Sbjct: 122 DSNDKFYEETLKGGGGTNDKALLRYFVDNSASAIDWLDSMGIKLDN-------LTITGGM 174
Query: 195 SHHRIVHAAD--MTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTL 252
S R D G + LL+ V I +F + D+ T + D GV +
Sbjct: 175 SEKRTHRPHDGSAVGGYLVDGLLKNVQER-KIPLFVN---ADV-TKITEKDGKVTGV-KV 228
Query: 253 NVETQEVVRFISKVTLLASGGAG-------HIYPS-----TTNPLVATGDGMAMAHRAQA 300
+ +E SK ++ +GG G P TTN +TGDG+ M +
Sbjct: 229 KINGKETKTISSKAVVVTTGGFGANKDMIAKYRPDLKGYVTTNQEGSTGDGIKMIEKLGG 288
Query: 301 VISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER 360
+M+ +Q HPT + S+LI EAVRG+G IL N +RF
Sbjct: 289 TTVDMDQIQIHPTV------------QQSKSYLIGEAVRGEGAILVNQKGKRFG------ 330
Query: 361 AELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFP------------------ 402
EL RD V+ +I+ YV+ D K K ++ +
Sbjct: 331 NELDTRDKVSAAINKL--PEKYAYVVFDSGVKDRVKAIAQYEEKGFVEEGKTIDELAKKI 388
Query: 403 NIAAECLKYGLD-----------------------ITSQP---IPVVPAAHYMCGGVRAG 436
N+ AE L LD +++ P I + P HY GGV+
Sbjct: 389 NVPAETLTKTLDTWNKAVKNKKDEAFGRTTGMDNDLSTGPYYAIKIAPGIHYTMGGVKIN 448
Query: 437 LQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRA 478
E + + GLY AGEV GLHG NR+ NS+ + ++F R+A
Sbjct: 449 TNTEVLKKDGSPITGLYAAGEVT-GGLHGENRIGGNSVADIIIFGRQA 495
>gnl|CDD|217281 pfam02910, Succ_DH_flav_C, Fumarate reductase flavoprotein C-term.
This family contains fumarate reductases, succinate
dehydrogenases and L-aspartate oxidases.
Length = 127
Score = 90.7 bits (226), Expect = 1e-21
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 524 RKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWET-YLFEHG--WEQTFVGLEACEMR 580
RKELQ IM + G+ R+ L+ A +I EL ++ + + + + EA E+
Sbjct: 1 RKELQEIMQEHAGVFRTEEGLEEALEKIKELRERFKNVRVDDKSKVFNTDLI--EALELG 58
Query: 581 NLFCCAKLVVSSALARHESRGLHYMVDFP 609
NL A+ + +SALAR ESRG HY D+P
Sbjct: 59 NLLELAEAIATSALARKESRGAHYREDYP 87
>gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional.
Length = 1167
Score = 90.6 bits (225), Expect = 1e-18
Identities = 86/330 (26%), Positives = 135/330 (40%), Gaps = 58/330 (17%)
Query: 87 VIGSGVAGLCYALEVAKHGTVAVITKAEPH-ESNTNYAQGGVSAVLCPSDSVESHM---- 141
V+G G+AG A+E A G ++ + E N+ A G++ + + + +
Sbjct: 414 VVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGK 473
Query: 142 ---QDTIVAG-AYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHH 197
+DT ++G CD V+ + + D I L ++G L++ GG S
Sbjct: 474 FFERDTHLSGKGGHCDPGLVKTLSVKSADAISWLSSLGVPLTV-------LSQLGGASRK 526
Query: 198 RIVHAADMT-------GREIERALLEAVVSD--PNISVFEHHFAIDLLTTLDG-PDAV-- 245
R A D G I R L + + + +++ LL+ PD V
Sbjct: 527 RCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVRE 586
Query: 246 --CHGVDTLNVETQE--VVRFISKVTLLASGG--------------AGHIYP-STTNPLV 286
GV V+ ++ +LA+GG A + TTN
Sbjct: 587 IRVTGVRYKQASDASGQVMDLLADAVILATGGFSNDHTPNSLLREYAPQLSGFPTTNGPW 646
Query: 287 ATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILY 346
ATGDG+ +A + A + +M+ VQ HPT L D P K +L EA+RG GG+L
Sbjct: 647 ATGDGVKLARKLGATLVDMDKVQLHPTGLIDPKDPSNRTK-----YLGPEALRGSGGVLL 701
Query: 347 NLGMERFMPLYDERAELAPRDVVARSIDDQ 376
N ERF+ EL R VV+++I Q
Sbjct: 702 NKNGERFV------NELDLRSVVSQAIIAQ 725
Score = 52.9 bits (127), Expect = 5e-07
Identities = 38/97 (39%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 422 VVPAAHYMCGGV----RAGLQGETN----------VRGLYVAGEVACTGLHGANRLASNS 467
V P+ HY GG A +Q E N + GL+ AGEV G+HG NRL NS
Sbjct: 825 VTPSIHYTMGGCLISPSAEMQMEDNSVNIFEDRRPILGLFGAGEVT-GGVHGGNRLGGNS 883
Query: 468 LLEALVFAR----RAVQPSIDHKKSTSIDLSASNWWT 500
LLE +VF + RA +I KK LS W T
Sbjct: 884 LLECVVFGKIAGDRAA--TILQKKKYG--LSKDKWTT 916
>gnl|CDD|237512 PRK13800, PRK13800, putative oxidoreductase/HEAT repeat-containing
protein; Provisional.
Length = 897
Score = 57.9 bits (140), Expect = 1e-08
Identities = 145/579 (25%), Positives = 223/579 (38%), Gaps = 107/579 (18%)
Query: 84 DFSVIGSGVAGLCYALEVAKHGT-VAVITKAEPHESNTNYAQG--GVS-AVLCPSDSVES 139
D VIG G AG AL A+HG V ++ KA S A G GV+ AV+ E
Sbjct: 15 DVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRHSGA-LAMGMDGVNNAVIPGKAEPED 73
Query: 140 HMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRI 199
++ + A + + TV T G ++ L G F++ E G + R H
Sbjct: 74 YVAEITRANDGIVNQRTVYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRR----VHRSG 129
Query: 200 VHAADM-TGREIERALLEAVVSDPN---ISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVE 255
+ M G+++++AL + I + + +LT +G AV G LN
Sbjct: 130 SYVLPMPEGKDVKKALYRVLRQRSMRERIRIENRLMPVRVLT--EGGRAV--GAAALNTR 185
Query: 256 TQEVVRFISKVTLLASG--------GAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEF 307
T E V +K +LA+G +G++Y + NP A GDG +MA+ A A +S +E
Sbjct: 186 TGEFVTVGAKAVILATGPCGRLGLPASGYLYGTYENPTNA-GDGYSMAYHAGAELSGIEC 244
Query: 308 VQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPL-YDERAELAPR 366
Q +P + D P N F GG N ERF+ Y +A
Sbjct: 245 FQINPL-IKDYNGPACAYVA--NPF---------GGYQVNAQGERFVDSDYWSGQMMAE- 291
Query: 367 DVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLK---------YGLDITS 417
V R I+ R Y L +SH P E+ LS +I + G D +
Sbjct: 292 --VKREIESA---RGPIY--LKVSHLP-EETLSALESILHTTERPTRGTFHANRGHDYRT 343
Query: 418 QPIPVVPAAHYMCG-----GVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEAL 472
I + + +C GV T V GLY AG++AC + N ++ A
Sbjct: 344 HDIEMHISEIGLCSGHSASGVWVDEHARTTVPGLYAAGDLAC--------VPHNYMIGAF 395
Query: 473 VFARRAVQPSIDHKKSTSIDLS---ASNWWTRTVVPKSLGCNVM---HNILRR------- 519
VF DL+ A+ P L + + H ++ R
Sbjct: 396 VFG----------------DLAGAHAAGTLAEVPAPGELPADQLAEAHELIYRPLRHPDG 439
Query: 520 --TKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEAC 577
+V +L+ + YV ++ L A + + AE + G +
Sbjct: 440 PPQPQVEYKLRRFVNDYVAPPKTAAKLSIAVETFERMAAE----IAGMGARTPHELMRCA 495
Query: 578 EMRNLFCCAKLVVSSALARHESR-GL-HYMVDFPHVEEN 614
E+ + CA++ S+L R ESR GL H D P ++
Sbjct: 496 EVSFIRDCAEMAARSSLTRTESRWGLYHDRADLPERDDA 534
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 57.4 bits (139), Expect = 1e-08
Identities = 65/251 (25%), Positives = 105/251 (41%), Gaps = 37/251 (14%)
Query: 83 FDFSVIGSGVAGLCYALEVAKH----GTVAVITKAEPHESNTNYAQGGVS--------AV 130
D VIG G AG A++ AK V ++ KA S G +S AV
Sbjct: 10 TDILVIGGGTAGPMAAIK-AKERNPALRVLLLEKANVKRS------GAISMGMDGLNNAV 62
Query: 131 LCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAR 190
+ + E + ++ +A + D + V + I++L G F++ E G+ + +
Sbjct: 63 IPGHATPEQYTKEITIANDGIVDQKAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKK 122
Query: 191 EGGHSHHRIVHAADM-TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGV 249
HH + M G +I++ L + + + A LLT DG V G
Sbjct: 123 ----VHHMGSYVLPMPEGHDIKKVLYRQL-KRARVLITNRIMATRLLTDADG--RVA-GA 174
Query: 250 DTLNVETQEVVRFISKVTLLASGGAGHI-YPST-------TNPLVATGDGMAMAHRAQAV 301
+ T E + +K +L G AG + P++ NP A GDG AMA+ A A
Sbjct: 175 LGFDCRTGEFLVIRAKAVILCCGAAGRLGLPASGYLFGTYENPTNA-GDGYAMAYHAGAE 233
Query: 302 ISNMEFVQFHP 312
++N+E Q +P
Sbjct: 234 LANLECFQINP 244
Score = 46.2 bits (110), Expect = 4e-05
Identities = 49/217 (22%), Positives = 83/217 (38%), Gaps = 43/217 (19%)
Query: 412 GLDITSQPIPVVPAAHYMCGG-----VRAGLQGETNVRGLYVAGEVACTGLHGANRLASN 466
G D Q + + + C G V + ET V GLY AG++A N
Sbjct: 333 GTDYRQQMVEMHISEIGFCSGHSASGVWVNEKAETTVPGLYAAGDMASVPH--------N 384
Query: 467 SLLEALVFARRAVQPSIDHKKSTSI------DLSASNWWTRTVVPKSLGCNVMHNILRRT 520
+L A + A + + ++ + + A R + P L R
Sbjct: 385 YMLGAFTYGWFAGENAAEYVAGRDLPEVDAAQVEAER--ARVLAP-----------LHRE 431
Query: 521 -----KEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLE 575
+V +L+ ++ Y+ + T ++ R E+ + E + + LE
Sbjct: 432 DGLPPAQVEYKLRRLVNDYLQPPKVTRKMEIGLQRFAEIREDLE-RIKARDPHELMRALE 490
Query: 576 ACEMRNLFCCAKLVVSSALARHESR-GL-HYMVDFPH 610
+R+ CA++ ++L R ESR GL HY VDFP
Sbjct: 491 VSSIRD---CAEMAARASLFRTESRWGLYHYRVDFPE 524
>gnl|CDD|235879 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha;
Validated.
Length = 608
Score = 45.7 bits (109), Expect = 7e-05
Identities = 30/110 (27%), Positives = 42/110 (38%), Gaps = 13/110 (11%)
Query: 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKV 266
G + + EA +V F DLL D G +V + F +K
Sbjct: 131 GESYKPIVAEAAKKALGDNVLNRVFITDLLVD----DNRIAGAVGFSVRENKFYVFKAKA 186
Query: 267 TLLASGGAGHIY-PSTTN--------PLVATGDGMAMAHRAQAVISNMEF 307
++A+GGA IY P + P TG G AM RA A ++ E
Sbjct: 187 VIVATGGAAGIYRPRSPGEGRGRMWYPPFNTGSGYAMGIRAGAEMTTFEN 236
Score = 40.7 bits (96), Expect = 0.003
Identities = 45/201 (22%), Positives = 80/201 (39%), Gaps = 41/201 (20%)
Query: 440 ETNVRGLYVAGEVACTGLHGAN--RLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASN 497
T V GL+ AG+V G + + +S S E + A+ AV+ +D+K ++
Sbjct: 392 MTTVEGLFAAGDVV-----GGSPHKFSSGSFAEGRIAAKAAVRYILDNKD-EKPEIDDDQ 445
Query: 498 ------------WWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRS--TTS 543
S +V N + +++ + LQ IM Y G + + TT+
Sbjct: 446 IEELKKEIYAPLERYEEFKDYSTDPDVNPNYIS-PEQLEERLQKIMDEYAGGISTNYTTN 504
Query: 544 ---LQTAEWRIDELEAEWETY----LFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALAR 596
L+ A ++ LE + E L E + E+++ A+ + L R
Sbjct: 505 EKLLEIALELLEMLEEDSEKLAARDLHEL--------MRCWELKHRLLVAEAHIRHLLFR 556
Query: 597 HESR--GLHYMVDFPHV-EEN 614
E+R G + D+P +EN
Sbjct: 557 KETRWPGYYERADYPGKDDEN 577
>gnl|CDD|236214 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated.
Length = 466
Score = 42.6 bits (101), Expect = 6e-04
Identities = 31/117 (26%), Positives = 42/117 (35%), Gaps = 9/117 (7%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP--------HESNTNYAQGGVSAVLCP 133
D VIG G A LC AL + G +V ++ A H N VL
Sbjct: 5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVG 64
Query: 134 SDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAR 190
+ E QD + D+ R++ E D + G F G LH+AR
Sbjct: 65 AYPEEEFWQDLLRVTGGRTDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVAR 121
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family includes
various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 40.7 bits (96), Expect = 0.001
Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 20/107 (18%)
Query: 87 VIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTI 145
VIG G+ GL A E+A+ G +V ++ + + + G +
Sbjct: 4 VIGGGIVGLSTAYELARRGLSVTLLERGDLASGASGRNAGLLH----------------- 46
Query: 146 VAGAYLCDDETVRVVCTEGPDRIRELIAI-GASFDRGEDGNLHLARE 191
G + + E D RELI G D G L LAR+
Sbjct: 47 -PGLRKERAPLLARLALESRDLWRELIEELGIDCDFRRTGVLVLARD 92
>gnl|CDD|233702 TIGR02061, aprA, adenosine phosphosulphate reductase, alpha
subunit. During dissimilatory sulfate reduction or
sulfur oxidation, adenylylsulfate (APS) reductase
catalyzes reversibly the two-electron reduction of APS
to sulfite and AMP. Found in several bacterial lineages
and in Archaeoglobales, APS reductase is a heterodimer
composed of an alpha subunit containing a noncovalently
bound FAD, and a beta subunit containing two [4Fe-4S]
clusters. Described by this model is the alpha subunit
of APS reductase, sharing common evolutionary origin
with fumarate reductase/succinate dehydrogenase
flavoproteins [Central intermediary metabolism, Sulfur
metabolism].
Length = 614
Score = 39.5 bits (92), Expect = 0.005
Identities = 62/262 (23%), Positives = 96/262 (36%), Gaps = 70/262 (26%)
Query: 84 DFSVIGSGVAGLCYALEVA----KHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVES 139
D ++G G+ G A E K G V+ + E + AQG +SA+ +
Sbjct: 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSGAVAQG-LSAINTYLGTRFG 59
Query: 140 HMQDTIVAGAYLCDDETVRVVCTEGPDRIRE-LIAIGASFDRGEDGNLHL---------- 188
++ ++ VR V T+ +RE LI R D ++HL
Sbjct: 60 --ENNA--------EDYVRYVRTDLMGLVREDLIF---DMARHVDDSVHLFEEWGLPLWI 106
Query: 189 -------AREG-------GHSHHRIV-HAADMTGREIERALLEAVVSDPNISVFEHHFAI 233
REG G S+ IV AA +I FE F +
Sbjct: 107 KPEDGKYVREGRWQIMIHGESYKPIVAEAAKNALGDI----------------FERIFIV 150
Query: 234 DLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIY-PSTTN--------P 284
LL + P+ + V NV EV F +K ++A+GGA ++Y P +
Sbjct: 151 KLLLDKNTPNRIAGAVG-FNVRANEVHVFKAKTVIVAAGGAVNVYRPRSVGEGAGRAWYA 209
Query: 285 LVATGDGMAMAHRAQAVISNME 306
+ G M +A A ++ ME
Sbjct: 210 VWNAGSTYTMCAQAGAEMTQME 231
>gnl|CDD|237224 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed.
Length = 574
Score = 39.7 bits (93), Expect = 0.005
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 84 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQD 143
D VIGSG GL A+ K G V+ + EP T GGV + + E+ + D
Sbjct: 11 DVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAFSGGVLWIPGNPHAREAGVAD 70
Query: 144 TIVAGA-YL 151
+ A YL
Sbjct: 71 SREAARTYL 79
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 37.6 bits (87), Expect = 0.017
Identities = 25/133 (18%), Positives = 40/133 (30%), Gaps = 15/133 (11%)
Query: 87 VIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTI 145
+IG G+ GL A +A+ G V V+ E GG+ A
Sbjct: 9 IIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRPLAD 68
Query: 146 VAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADM 205
++ A + E + GA R +L AA++
Sbjct: 69 LSLALW--------------RELSEELGTGAGLRRRGLLDLAAREGLKGLAQLERLAAEL 114
Query: 206 TGREIERALLEAV 218
+ LL+A
Sbjct: 115 EAAGEDAELLDAA 127
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 36.0 bits (84), Expect = 0.054
Identities = 34/127 (26%), Positives = 47/127 (37%), Gaps = 27/127 (21%)
Query: 75 LRDGSVKYFDFS----VIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTN------YA 123
+ V +D V+G G AG C A+E A G V V+ +A T Y
Sbjct: 9 VSAEDVTSWDDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATALSGGVIYL 68
Query: 124 QGGVSAVLCP--SDSVESHMQDTIVAGAYLC-------DDETVRVVCTEGPDRIRELIAI 174
GG + DS E+ M AYL D+E +R C + L +
Sbjct: 69 GGGTAVQKAAGFEDSPEN-MY------AYLRVAVGPGVDEEKLRRYCEGSVEHFDWLEGL 121
Query: 175 GASFDRG 181
G F+R
Sbjct: 122 GVPFERS 128
>gnl|CDD|233889 TIGR02485, CobZ_N-term, precorrin 3B synthase CobZ. CobZ is
essential for cobalamin biosynthesis (by knockout of the
R. capsulatus gene ) and is complemented by the
characterized precorrin 3B synthase CobG. The enzyme has
been shown to contain flavin, heme and Fe-S cluster
cofactors and is believed to require dioxygen as a
substrate. This model identifies the N-terminal portion
of the R. capsulatus gene which, in other species exists
as a separate protein. The C-terminal portion is
homologous to the 2-component signal transduction system
protein CitB (TIGR02484) [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 432
Score = 35.6 bits (82), Expect = 0.070
Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 9/113 (7%)
Query: 87 VIGSGVAGLCYALEVAKHGTVAVITKAEP---------HESNTNYAQGGVSAVLCPSDSV 137
VIG G+AGLC A+E A+ G ++ +A P H N A + S
Sbjct: 1 VIGGGLAGLCAAIEAARAGASVLLLEAAPRARRGGNARHGRNIRVAHDIPTDFQRDSYPA 60
Query: 138 ESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAR 190
E +D ++ R+ G +R A G GNL +R
Sbjct: 61 EEFERDLAPVTGGRTNESLSRLGIGRGSRDLRWAFAHGVHLQPWAAGNLPYSR 113
>gnl|CDD|236111 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
Length = 557
Score = 35.0 bits (81), Expect = 0.14
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 127
+D V+GSG AG+ AL A G + V+ KA + +T + GGV
Sbjct: 8 YDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARSGGGV 53
Score = 29.6 bits (67), Expect = 5.3
Identities = 36/141 (25%), Positives = 50/141 (35%), Gaps = 43/141 (30%)
Query: 236 LTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH------IY---PSTTNPLV 286
LT L D GV +++R V +LASGG H Y P T V
Sbjct: 231 LTDLYVEDGRVTGVHAAESGEPQLIRARRGV-ILASGGFEHNEQMRAKYQRAPIGTEWTV 289
Query: 287 A----TGDGMAMAHRAQAVISNMEFVQFHPT---------ALADEGLPIKPKKTRENSFL 333
TGDG+ + A + M+ + PT AL++ LP
Sbjct: 290 GAKANTGDGILAGEKLGAALDLMDDAWWGPTIPLPGGPWFALSERNLP------------ 337
Query: 334 ITEAVRGDGGILYNLGMERFM 354
G I+ N+ +RFM
Sbjct: 338 --------GSIIVNMSGKRFM 350
>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase
selenoprotein. This homodimeric, FAD-containing member
of the pyridine nucleotide disulfide oxidoreductase
family contains a C-terminal motif Cys-SeCys-Gly, where
SeCys is selenocysteine encoded by TGA (in some sequence
reports interpreted as a stop codon). In some members of
this subfamily, Cys-SeCys-Gly is replaced by
Cys-Cys-Gly. The reach of the selenium atom at the
C-term arm of the protein is proposed to allow broad
substrate specificity.
Length = 484
Score = 34.4 bits (79), Expect = 0.16
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGT-VAVITKAEPHESNTNYAQGGVSA 129
+D VIG G GL A E A +G V ++ P T + GG
Sbjct: 3 YDLIVIGGGSGGLAAAKEAAAYGAKVMLLDFVTPTPLGTRWGIGGTCV 50
>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
Length = 557
Score = 33.6 bits (77), Expect = 0.31
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGV 127
+D V+GSG G+C AL A G +I + + + GGV
Sbjct: 7 YDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMSGGV 51
>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed.
Length = 581
Score = 33.5 bits (77), Expect = 0.32
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 84 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQD 143
D VIGSG AGL A+ A HG ++ + +P T GG + + + + +
Sbjct: 14 DVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAWSGGWMWIPRNPLARRAGIVE 73
Query: 144 TI 145
I
Sbjct: 74 DI 75
>gnl|CDD|181564 PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 384
Score = 33.6 bits (77), Expect = 0.32
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 116
+D +V+G G+ G AL AK G +VAVI EP
Sbjct: 2 NKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPK 38
>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 33.4 bits (77), Expect = 0.36
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVI 110
D V+G+G AGL +A +A G V +I
Sbjct: 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLI 32
>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 33.3 bits (77), Expect = 0.39
Identities = 33/124 (26%), Positives = 47/124 (37%), Gaps = 14/124 (11%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG--GVSAVLCPSDSVES 139
FD VIG G+AGL AL A+ G VA++ K + +++ G + L V
Sbjct: 3 FDVLVIGGGLAGLTAALAAAEAGKRVALVAKG---QGALHFSSGSIDLLGYLPDGQPVSD 59
Query: 140 HMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDR-GEDGNLHLAREGGHSHHR 198
+ A A L + G D +RE + A F E L L +H R
Sbjct: 60 PFE----ALAALAEQAPEHPYSLVGADAVREAL---AQFQALLEAAGLPLVGSVERNHLR 112
Query: 199 IVHA 202
Sbjct: 113 PTPL 116
>gnl|CDD|213807 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase,
anaerobic, B subunit. Members of this protein family
are the B subunit, product of the glpB gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase [Energy
metabolism, Anaerobic].
Length = 419
Score = 33.1 bits (76), Expect = 0.43
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGT-VAVIT 111
FD +IG G+AGL AL +A+ G A+I
Sbjct: 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIA 30
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 33.2 bits (77), Expect = 0.44
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115
+ +D VIG+G AG A AK G VA+I K
Sbjct: 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPL 37
>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional.
Length = 499
Score = 32.9 bits (75), Expect = 0.50
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGT-VAVITKAEPHESNTNYAQGG 126
+D VIG G G+ A E A HG VA+ +P T + GG
Sbjct: 6 YDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGG 50
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related
FAD-dependent oxidoreductases [Coenzyme metabolism /
Energy production and conversion].
Length = 387
Score = 32.8 bits (75), Expect = 0.53
Identities = 28/167 (16%), Positives = 50/167 (29%), Gaps = 38/167 (22%)
Query: 87 VIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQ--- 142
++G+G AGL AL +A+ G V ++ +A + G + S + ++
Sbjct: 7 IVGAGPAGLALALALARAGLDVTLLERAPRE-----LLERG--RGIALSPNALRALERLG 59
Query: 143 --DTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIV 200
D + A D G L
Sbjct: 60 LWDRLEALGVPPLH--------------------VMVVDDGGRRLLIFDAAELGRGALGY 99
Query: 201 HAADMTGR-EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVC 246
+ R ++ ALLEA + PN+++ + DG
Sbjct: 100 ----VVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTL 142
>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
polyferredoxins [Energy production and conversion].
Length = 622
Score = 32.8 bits (75), Expect = 0.69
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 87 VIGSGVAGLCYALEVAKHGTVAVITKAEP 115
VIG GVAG+ ALE+A G + + EP
Sbjct: 129 VIGGGVAGITAALELADMGFKVYLVEKEP 157
>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis,
outer membrane].
Length = 374
Score = 31.9 bits (73), Expect = 1.0
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPH 116
FD+ ++G+G++G A A+ G +I + H
Sbjct: 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNH 35
>gnl|CDD|217230 pfam02784, Orn_Arg_deC_N, Pyridoxal-dependent decarboxylase,
pyridoxal binding domain. These pyridoxal-dependent
decarboxylases acting on ornithine, lysine, arginine and
related substrates This domain has a TIM barrel fold.
Length = 245
Score = 31.5 bits (72), Expect = 1.0
Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 159 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGRE-IERALLEA 217
V P +R L +G FD G L G RI+ A R + AL
Sbjct: 26 VKANSDPAVLRLLAELGLGFDCASKGELERVLAAGVPPERIIFANPCKSRSELRYALEHG 85
Query: 218 VVSDPNISVFEHHFAIDLL 236
VV ++ ++ L
Sbjct: 86 VV----CVTVDNVEELEKL 100
>gnl|CDD|233108 TIGR00735, hisF, imidazoleglycerol phosphate synthase, cyclase
subunit. [Amino acid biosynthesis, Histidine family].
Length = 254
Score = 31.6 bits (72), Expect = 1.2
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 15/93 (16%)
Query: 235 LLTTLDGPDAVCHGVD-TLNVETQEVVRFISKVTLLASGGAG---HIYPSTTNPLVATGD 290
LLT++D D G D L E V K+ ++ASGGAG H Y + T
Sbjct: 173 LLTSMDK-DGTKSGYDLELTKAVSEAV----KIPVIASGGAGKPEHFYEAFTKGKADAAL 227
Query: 291 GMAMAHRAQAVISNMEFVQFHPTALADEGLPIK 323
++ H + I ++ LA+ G+P++
Sbjct: 228 AASVFHYREITIGEVK------EYLAERGIPVR 254
>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein. This
family includes lycopene beta and epsilion cyclases
(which form beta and delta carotene, respectively) from
bacteria and plants as well as the plant
capsanthin/capsorubin and neoxanthin cyclases which
appear to have evolved from the plant lycopene cyclases.
The plant lycopene epsilon cyclases also transform
neurosporene to alpha zeacarotene.
Length = 388
Score = 31.6 bits (72), Expect = 1.2
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNY 122
D +VIG G AGL ALE+A+ G V +I P N Y
Sbjct: 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTY 40
>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system
oxidoreductase, YpdA family. Members of this protein
family, including YpdA from Bacillus subtilis, are
apparent oxidoreductases present only in species with an
active bacillithiol system. They have been suggested
actually to be thiol disulfide oxidoreductases (TDOR),
although the evidence is incomplete [Unknown function,
Enzymes of unknown specificity].
Length = 316
Score = 31.4 bits (72), Expect = 1.6
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 440 ETNVRGLYVAGEVACTGLH 458
ETNV GLY+AG V G+
Sbjct: 276 ETNVPGLYLAG-VIAAGMD 293
>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism].
Length = 444
Score = 31.5 bits (72), Expect = 1.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 87 VIGSGVAGLCYALEVAKHGTVAVITKAEP 115
+IG G+AGL A + K G +T E
Sbjct: 5 IIGGGIAGLSAAYRLQKAGPDVEVTLFEA 33
>gnl|CDD|215375 PLN02697, PLN02697, lycopene epsilon cyclase.
Length = 529
Score = 31.3 bits (71), Expect = 1.6
Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV----SAVLCPSDSVE 138
D VIG G AGL A E AK G V +I P +N GV L D +E
Sbjct: 110 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY-----GVWEDEFKDLGLEDCIE 164
Query: 139 SHMQDTIVAGAYLCDDETV 157
+DTIV YL DD+ +
Sbjct: 165 HVWRDTIV---YLDDDKPI 180
>gnl|CDD|232789 TIGR00027, mthyl_TIGR00027, methyltransferase, TIGR00027 family.
This model represents a set of probable
methyltransferases, about 300 amino acids long, with
essentially full length homology. Members share an
N-terminal region described by pfam02409. Included are a
paralogous family of 12 proteins in Mycobacterium
tuberculosis, plus close homologs in related species, a
family of 8 in the archaeon Methanosarcina acetivorans,
and small numbers of members in other species, including
plants [Unknown function, Enzymes of unknown
specificity].
Length = 260
Score = 30.7 bits (70), Expect = 2.2
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 525 KELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLE 575
E ++ M + + + + A+ +L E GW +
Sbjct: 203 GEWRAGMRA--PVYHAARGVDGSGLVFGIDRADVAEWLAERGWRASEHTPG 251
>gnl|CDD|224981 COG2070, COG2070, Dioxygenases related to 2-nitropropane
dioxygenase [General function prediction only].
Length = 336
Score = 30.8 bits (70), Expect = 2.5
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 19/68 (27%)
Query: 241 GPDAVCH-GVDTLNVET----QEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMA 295
G +A H G L V T EVV + + ++A+GG +A G G+A A
Sbjct: 155 GAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGG------------IADGRGIAAA 202
Query: 296 HR--AQAV 301
A V
Sbjct: 203 LALGADGV 210
>gnl|CDD|237223 PRK12839, PRK12839, hypothetical protein; Provisional.
Length = 572
Score = 31.0 bits (70), Expect = 2.5
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114
+D V+GSG GL A+ A G V V+ KA
Sbjct: 9 YDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKAS 41
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 30.5 bits (70), Expect = 2.7
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITK 112
+D VIGSG AG A++ AK G VAVI +
Sbjct: 6 YDLVVIGSGPAGEGAAMQAAKLGKRVAVIER 36
>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Reviewed.
Length = 391
Score = 30.7 bits (70), Expect = 2.7
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHE-SNTNYAQGGVSAVLCPS 134
D +++G G+ G AL +A+HG +VAV+ A P + +SA+ S
Sbjct: 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAAS 59
>gnl|CDD|225617 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino
acid transport and metabolism].
Length = 421
Score = 30.5 bits (69), Expect = 2.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGTVAVI 110
FD ++IG G+AGL L + + G I
Sbjct: 3 FDVAIIGGGLAGLTCGLALQQAGKRCAI 30
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 27.8 bits (63), Expect = 3.1
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 87 VIGSGVAGLCYALEVAKHG-TVAVI 110
++G+G++GL A +AK G V V+
Sbjct: 1 IVGAGLSGLVAAYLLAKRGKDVLVL 25
>gnl|CDD|220512 pfam09998, DUF2239, Uncharacterized protein conserved in bacteria
(DUF2239). This domain, found in various hypothetical
bacterial proteins, has no known function.
Length = 173
Score = 29.1 bits (66), Expect = 4.4
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 453 ACTGLHGANRLASNSLLEALVFARRAVQPS-----IDHKKSTSIDL 493
T G RLAS L E + + A + D +DL
Sbjct: 2 TYTAFAGHRRLASGPLPEVALAVKAAAGTAAPVLVFDDATGRPVDL 47
>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional.
Length = 479
Score = 29.9 bits (68), Expect = 4.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 87 VIGSGVAGLCYALEVAKHGTVAVITKAEPH 116
+IG+G AGL A E+ K G + +A+P
Sbjct: 9 IIGAGPAGLTAAYELLKRGYPVTVLEADPV 38
>gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase. This
enzyme is involved in the conversion of UDP-GALP into
UDP-GALF through a 2-keto intermediate. It contains FAD
as a cofactor. The gene is known as glf, ceoA, and rfbD.
It is known experimentally in E. coli, Mycobacterium
tuberculosis, and Klebsiella pneumoniae [Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides].
Length = 377
Score = 29.7 bits (67), Expect = 4.7
Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITK 112
FD+ ++G+G++G+ A +A+ V V+ K
Sbjct: 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEK 32
>gnl|CDD|179027 PRK00441, argR, arginine repressor; Provisional.
Length = 149
Score = 28.9 bits (65), Expect = 5.3
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 40 QRELSWFLRFQRFNFSHSPVSENWKSLRTVPVLSCLRDGSVKY 82
Q EL+ L+ F+ + + VS + K L+ + VLS DG KY
Sbjct: 21 QEELAEELKKMGFDVTQATVSRDIKELKLIKVLS--NDGKYKY 61
>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase.
Length = 447
Score = 29.7 bits (67), Expect = 5.4
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVI 110
+ D V+G G AGL A +V++ G +V I
Sbjct: 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCI 57
>gnl|CDD|224000 COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit
(contains helicase and exonuclease domains) [DNA
replication, recombination, and repair].
Length = 1139
Score = 29.7 bits (67), Expect = 5.5
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 12/56 (21%)
Query: 196 HHRIVHAADMT--------GREIERALLEA----VVSDPNISVFEHHFAIDLLTTL 239
R + A D+ IERAL +A V S+FE A DLL L
Sbjct: 548 GERPIRAGDIAVLVRSRNEAAAIERALKKAGIIPVYLSNRSSLFETLEAQDLLALL 603
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases, as
yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme activities
have been described, UbiB (which acts first at position
6, see TIGR01982), UbiH (which acts at position 4,) and
UbiF (which acts at position 5,). UbiH and UbiF are
similar to one another and form the basis of this
subfamily. Interestingly, E. coli contains another
hydroxylase gene, called visC, that is highly similar to
UbiF, adjacent to UbiH and, when mutated, results in a
phenotype similar to that of UbiH (which has also been
named visB). Several other species appear to have three
homologs in this family, although they assort themselves
differently on phylogenetic trees (e.g. Xylella and
Mesorhizobium) making it difficult to ascribe a specific
activity to each one. Eukaryotes appear to have only a
single homolog in this subfamily (COQ6,) which
complements UbiH, but also possess a non-orthologous
gene, COQ7 which complements UbiF [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 387
Score = 29.5 bits (67), Expect = 6.2
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 84 DFSVIGSGVAGLCYALEVAKHGT--VAVITKAEPHESNTNYAQGGVSAV 130
D ++G G GL AL +A+ G VA+I VSA+
Sbjct: 1 DIVIVGGGPVGLALALALARSGGLKVALIEATPLPAPADPGFDNRVSAL 49
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 29.3 bits (66), Expect = 6.6
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 27/119 (22%)
Query: 322 IKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAEL--------APRDVVARSI 373
+ K R N L+ E+++ G + ++ +E+ + L DER +L A R+ +++ I
Sbjct: 2 LDRKLLRNNPDLVKESLKARGLSV-DIDLEKLIALDDERKKLLSEIEELQAKRNELSKQI 60
Query: 374 D--------------DQLKKRNEKYVLLDISHKPTE----KILSHFPNIAAECLKYGLD 414
+LK+ E+ L + K E L PNI E + G D
Sbjct: 61 GKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESVPVGKD 119
>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase.
Length = 496
Score = 29.6 bits (67), Expect = 6.7
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Query: 84 DFSVIGSGVAGLC--YALEVAKHGTVAVITKAE 114
D +V+G+GV+GL YAL +KHG ++T+A
Sbjct: 14 DVAVVGAGVSGLAAAYAL-ASKHGVNVLVTEAR 45
>gnl|CDD|216687 pfam01763, Herpes_UL6, Herpesvirus UL6 like. This family consists
of various proteins from the herpesviridae that are
similar to herpes simplex virus type I UL6 virion
protein. UL6 is essential for cleavage and packaging of
the viral genome.
Length = 556
Score = 29.1 bits (66), Expect = 9.1
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 10/50 (20%)
Query: 513 MHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYL 562
++N LR + ++L + + T+L D++ ++W +
Sbjct: 19 IYNSLRSPEVFIRQLFYTLLK--------TALNAC--TYDDVLSDWRKHE 58
>gnl|CDD|237613 PRK14109, PRK14109, bifunctional glutamine-synthetase
adenylyltransferase/deadenyltransferase; Provisional.
Length = 1007
Score = 29.0 bits (66), Expect = 9.4
Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 15/94 (15%)
Query: 154 DETVRVVCTEGPDRIRELIA-IGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGR-EIE 211
E + + + R R L+A +GAS G+ HL + + E+
Sbjct: 74 AELLAALRADPGLRGR-LLAVLGASSALGD----HLVAHPEDWRALLRDPVALPSAEELR 128
Query: 212 RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAV 245
ALLEAV +DP + + G +AV
Sbjct: 129 AALLEAVGADPGAPTP--------VAGVTGAEAV 154
>gnl|CDD|202027 pfam01884, PcrB, PcrB family. This family contains proteins that
are related to PcrB. The function of these proteins is
unknown.
Length = 231
Score = 28.6 bits (64), Expect = 9.6
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 240 DGPDAVCHGVDTLNVETQEVVRFISKVTLL 269
G DA+ G T V VVR I KV L
Sbjct: 31 SGTDAIMIGGSTGGVTLDNVVRLIKKVYGL 60
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.409
Gapped
Lambda K H
0.267 0.0851 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,665,856
Number of extensions: 3235285
Number of successful extensions: 3330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3065
Number of HSP's successfully gapped: 126
Length of query: 641
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 538
Effective length of database: 6,369,140
Effective search space: 3426597320
Effective search space used: 3426597320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.4 bits)