RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 006532
(641 letters)
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD,
oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 773 bits (1998), Expect = 0.0
Identities = 228/553 (41%), Positives = 310/553 (56%), Gaps = 30/553 (5%)
Query: 79 SVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVE 138
D +IGSG AGL AL +A V V++K E +T YAQGG++AV +DS++
Sbjct: 5 PEHSCDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFYAQGGIAAVFDETDSID 64
Query: 139 SHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDR----GEDGNLHLAREGGH 194
SH++DT++AGA +CD V V + ++ LI G FD + + HL REGGH
Sbjct: 65 SHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGH 124
Query: 195 SHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAV---CHGVDT 251
SH RI+HAAD TGRE+E L+ ++ PNI V E A+DL+ + G
Sbjct: 125 SHRRILHAADATGREVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWV 184
Query: 252 LNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFH 311
N + V +K +LA+GGA +Y TTNP +++GDG+AMA RA ++N+EF QFH
Sbjct: 185 WNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANLEFNQFH 244
Query: 312 PTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVAR 371
PTAL +FL+TEA+RG+G L RFMP +DER ELAPRD+VAR
Sbjct: 245 PTALYHPQAR---------NFLLTEALRGEGAYLKRPDGTRFMPDFDERGELAPRDIVAR 295
Query: 372 SIDDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCG 431
+ID ++K+ + LDISHKP + I HFP I + L G+D+T +P+P+VPAAHY CG
Sbjct: 296 AIDHEMKRLGADCMFLDISHKPADFIRQHFPMIYEKLLGLGIDLTQEPVPIVPAAHYTCG 355
Query: 432 GVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSI 491
GV G T+V GLY GEV+ TGLHGANR+ASNSLLE LV+ A +
Sbjct: 356 GVMVDDHGRTDVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRRMPYAHD 415
Query: 492 DLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRI 551
+ W V + HN EL+ MW YVGIVR+T L+ A RI
Sbjct: 416 ISTLPPWDESRVENPDERVVIQHN--------WHELRLFMWDYVGIVRTTKRLERALRRI 467
Query: 552 DELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHV 611
L+ E + Y + V E+RNL A+L+V A+ R ESRGLH+ +D+P +
Sbjct: 468 TMLQQEIDEY-----YAHFRVSNNLLELRNLVQVAELIVRCAMMRKESRGLHFTLDYPEL 522
Query: 612 EENKRLPTIILPS 624
+ P+I+ P
Sbjct: 523 LTHSG-PSILSPG 534
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
{Sulfolobus tokodaii}
Length = 472
Score = 691 bits (1787), Expect = 0.0
Identities = 166/535 (31%), Positives = 248/535 (46%), Gaps = 70/535 (13%)
Query: 87 VIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIV 146
+IGSG+AGL + + + G + +T A+GGV+A + DS E H QDTI
Sbjct: 4 IIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIR 63
Query: 147 AGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMT 206
G LCD +TV V +E + I + G F+ L EGGH+ R++H D T
Sbjct: 64 VGDGLCDVKTVNYVTSEAKNVIETFESWGFEFEE------DLRLEGGHTKRRVLHRTDET 117
Query: 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKV 266
GREI LL+ + I + E + D G T +
Sbjct: 118 GREIFNFLLKL-AREEGIPIIEDRLVEIRVK-----DGKVTGFVTEK----RGLVEDVDK 167
Query: 267 TLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKK 326
+LA+GG ++Y ++ GDGMA+A +A ++++MEFVQFHPT + +G
Sbjct: 168 LVLATGGYSYLYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDG------- 220
Query: 327 TRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVL 386
FL+TE +RG+G + N ERF+ YD+R ELAPRD+++R+I ++ K + V
Sbjct: 221 ---EVFLLTETLRGEGAQIINENGERFLFNYDKRGELAPRDILSRAIYIEMLKGH--KVF 275
Query: 387 LDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGL 446
+D+S E FP +A ++G + IP+ PAAH++ GG+R ++GE+N+ L
Sbjct: 276 IDLSKI--EDFERKFPVVAKYLARHGHNYK-VKIPIFPAAHFVDGGIRVNIRGESNIVNL 332
Query: 447 YVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPK 506
Y GEV+ +GLHGANRLASNSLLE LVF + + S D + +
Sbjct: 333 YAIGEVSDSGLHGANRLASNSLLEGLVFGINLPRYVDSSWEGISTDDGIVHSVRISGNK- 391
Query: 507 SLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHG 566
KE++ I W VGI+R+ L A I+
Sbjct: 392 --------------TLSLKEIRRINWENVGIIRNEEKLVKA---INTYS----------- 423
Query: 567 WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTII 621
+N + L +A R ESRG H+ D+P+ + N
Sbjct: 424 ----------SSTQNEAIISYLTALAAEIRKESRGNHFREDYPYKDPNWEKRIYF 468
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia
coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A*
1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Length = 602
Score = 491 bits (1265), Expect = e-167
Identities = 165/565 (29%), Positives = 257/565 (45%), Gaps = 61/565 (10%)
Query: 80 VKYFDFSVIGSGVAGLCYALEVAKHGT---VAVITKAEPHESNTNYAQGGVSAVLCPSDS 136
D +++G+G AGL A+ A+ +A+I+K P S+T A+GG +AV DS
Sbjct: 3 TFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDS 62
Query: 137 VESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSH 196
E H DT+ G +LC+ + V P + +L G + R DG++++ R GG
Sbjct: 63 FEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKI 122
Query: 197 HRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVET 256
R AAD TG + L + + P I F+ HF +D+L D G+ +N+
Sbjct: 123 ERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVD----DGHVRGLVAMNMME 178
Query: 257 QEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALA 316
+V+ + ++A+GGAG +Y TN + TGDGM MA + +MEFVQ+HPT L
Sbjct: 179 GTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLP 238
Query: 317 DEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD------------ERAELA 364
G+ L+TE RG+GGIL N R++ Y + EL
Sbjct: 239 GSGI------------LMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELG 286
Query: 365 PRDVVARSIDDQLKK------RNEKYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITS 417
PRD V+++ + +K V LD+ H +K+ P I Y G+D
Sbjct: 287 PRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVK 346
Query: 418 QPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARR 477
+PIPV P AHY GG+ ET ++GL+ GE + GLHGANRL SNSL E +VF R
Sbjct: 347 EPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRL 406
Query: 478 AVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILR--------RTKEVRKELQS 529
A + + + + ++ V + ++R E+
Sbjct: 407 AGEQATERAATAGNG--------NEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGL 458
Query: 530 IMWRYVGIVRSTTSLQTAEWRIDELEAEWET-YLFEHG--WEQTFVGLEACEMRNLFCCA 586
M GI R+ +Q ++ EL+ ++ + + + + E+ + A
Sbjct: 459 AMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLL--YTIELGHGLNVA 516
Query: 587 KLVVSSALARHESRGLHYMVD--FP 609
+ + SA+AR ESRG H +D
Sbjct: 517 ECMAHSAMARKESRGAHQRLDEGCT 541
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Length = 660
Score = 482 bits (1243), Expect = e-163
Identities = 168/577 (29%), Positives = 261/577 (45%), Gaps = 73/577 (12%)
Query: 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-----CP 133
V+Y D VIG G+AGL A+ + G + V++ S++ AQGG+ A L
Sbjct: 3 VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSD 62
Query: 134 SDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLARE-- 191
D+ + H DT+ + CD + R+ P IREL A G + R G+
Sbjct: 63 GDNEDLHFMDTVKGSDWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQ 122
Query: 192 -------------------GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFA 232
GG R + AD TG + A+ + +S+ + A
Sbjct: 123 KTTITEEDFRHGLIHSRDFGGTKKWRTCYTADATGHTMLFAVANECLKL-GVSIQDRKEA 181
Query: 233 IDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGM 292
I L+ D C+G ++ T +++ +++K TL+A+GG G IY +TTN +V G G
Sbjct: 182 IALIHQ----DGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGT 237
Query: 293 AMAHRA-QAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGME 351
A+A A + NME VQFHPT L G+ L+TE RGDGGIL ++
Sbjct: 238 AIALETGIAQLGNMEAVQFHPTPLFPSGI------------LLTEGCRGDGGILRDVDGH 285
Query: 352 RFMPLYD-ERAELAPRDVVARSIDDQLKK------RNEKYVLLDISHKPTEKILSHFPNI 404
RFMP Y+ E+ ELA RDVV+R + + ++K +++ LDIS + I ++ ++
Sbjct: 286 RFMPDYEPEKKELASRDVVSRRMIEHIRKGKGVQSPYGQHLWLDISILGRKHIETNLRDV 345
Query: 405 AAECLKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRL 463
C + G+D + PV+P HY GG+R +GE ++GL+ AGE AC +HG NRL
Sbjct: 346 QEICEYFAGIDPAEKWAPVLPMQHYSMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRL 405
Query: 464 ASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILR----- 518
NS+ EA+V + +H +T +DL + +
Sbjct: 406 GGNSVSEAVVAGMIVGEYFAEHCANTQVDLETK-------TLEKFVKGQEAYMKSLVESK 458
Query: 519 ---RTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWET-YLFEHG--WEQTFV 572
+++ ++ +M VGI R L+ A ++EL + + +
Sbjct: 459 GTEDVFKIKNRMKDVMDDNVGIFRDGPHLEKAVKELEELYKKSKNVGIKNKRLHANPELE 518
Query: 573 GLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 609
EA + + A V AL R ESRG H D+P
Sbjct: 519 --EAYRVPMMLKVALCVAKGALDRTESRGAHNREDYP 553
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A*
2wu2_A* 2wu5_A*
Length = 588
Score = 468 bits (1206), Expect = e-159
Identities = 185/569 (32%), Positives = 266/569 (46%), Gaps = 66/569 (11%)
Query: 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL--CPSDS 136
V+ FD VIG+G AG+ AL++++ G T A+++K P S+T AQGG++ L D+
Sbjct: 5 VREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDN 64
Query: 137 VESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSH 196
E HM DT+ Y+ D + + +C GP+ I EL +G F R +DG ++ GG S
Sbjct: 65 WEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSK 124
Query: 197 -------HRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGV 249
R AAD TG + L + + + + ++F +A+DL+ DG G
Sbjct: 125 NFGGEQAARTAAAADRTGHALLHTLYQQNLKN-HTTIFSEWYALDLVKNQDG---AVVGC 180
Query: 250 DTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQ 309
L +ET EVV F ++ T+LA+GGAG IY STTN + TGDG+ MA RA + +ME Q
Sbjct: 181 TALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQ 240
Query: 310 FHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD-ERAELAPRDV 368
FHPT +A G L+TE RG+GG L N ERFM Y +LA RDV
Sbjct: 241 FHPTGIAGAG------------VLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDV 288
Query: 369 VARSIDDQLKK------RNEKYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIP 421
VARSI ++++ + L + H E + S P I + +D +PIP
Sbjct: 289 VARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIP 348
Query: 422 VVPAAHYMCGGVRAGLQGE----------TNVRGLYVAGEVACTGLHGANRLASNSLLEA 471
V+P HYM GG+ + G+ V GL+ GE+AC +HGANRL NSLL+
Sbjct: 349 VIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDL 408
Query: 472 LVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILR--------RTKEV 523
+VF R A + +S + + R +
Sbjct: 409 VVFGRAAGLHLQESIAEQG---------ALRDASESDVEASLDRLNRWNNNRNGEDPVAI 459
Query: 524 RKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWE-TYLFEHG--WEQTFVGLEACEMR 580
RK LQ M + R ++ ++ + + L + + V E E+
Sbjct: 460 RKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNTQRV--ECLELD 517
Query: 581 NLFCCAKLVVSSALARHESRGLHYMVDFP 609
NL A SA R ESRG H DFP
Sbjct: 518 NLMETAYATAVSANFRTESRGAHSRFDFP 546
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane
protein, heme protein, iron sulfur PROT cytochrome B,
oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus
gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A*
1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A*
3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A*
3aec_A* ...
Length = 621
Score = 462 bits (1191), Expect = e-156
Identities = 180/565 (31%), Positives = 269/565 (47%), Gaps = 66/565 (11%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL--CPSDSVES 139
FD V+G+G AGL A +++ G A +TK P S+T AQGG++A L D+
Sbjct: 19 FDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRW 78
Query: 140 HMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS---- 195
H DT+ +L D + + + + P + EL G F R E+G ++ GG S
Sbjct: 79 HFYDTVKGSDWLGDQDAIHYMTEQAPAAVIELENYGMPFSRTEEGKIYQRAFGGQSLQFG 138
Query: 196 ----HHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDT 251
HR AD TG + L + + S F +FA+DLL + C GV
Sbjct: 139 KGGQAHRCCCVADRTGHSLLHTLYGRSLRY-DTSYFVEYFALDLLME----NGECRGVIA 193
Query: 252 LNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFH 311
L +E + RF +K T++A+GG G Y S T+ +TGDG AM RA ++EFVQFH
Sbjct: 194 LCIEDGTIHRFRAKNTVIATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFH 253
Query: 312 PTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD-ERAELAPRDVVA 370
PT + G LITE RG+GGIL N ERFM Y +LA RDVV+
Sbjct: 254 PTGIYGAG------------CLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVS 301
Query: 371 RSIDDQLKK-----RNEKYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVP 424
RS+ ++++ + +V L + H P +++ + P I+ + + G+D+T +PIPV+P
Sbjct: 302 RSMTIEIREGRGCGPEKDHVYLQLHHLPPQQLATRLPGISETAMIFAGVDVTKEPIPVLP 361
Query: 425 AAHYMCGGVRAGLQGET---------NVRGLYVAGEVACTGLHGANRLASNSLLEALVFA 475
HY GG+ +G+ V GLY GE A +HGANRL +NSLL+ +VF
Sbjct: 362 TVHYNMGGIPTNYKGQVITHVNGEDKVVPGLYACGEAASASVHGANRLGANSLLDLVVFG 421
Query: 476 RRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILR--------RTKEVRKEL 527
R + +I + + + G + N+ + RT E R +
Sbjct: 422 RAC---------ALTIAETCKPGEPVPSIKPNAGEESVANLDKLRFADGTIRTSEARLNM 472
Query: 528 QSIMWRYVGIVRSTTSLQTAEWRIDELEAEWE-TYLFEHG--WEQTFVGLEACEMRNLFC 584
Q M + + R+ + LQ ++ ++ + F+ G W V E E++NL
Sbjct: 473 QKTMQSHAAVFRTGSILQEGCEKLSQIYRDLAHLKTFDRGIVWNTDLV--ETLELQNLML 530
Query: 585 CAKLVVSSALARHESRGLHYMVDFP 609
CA + A AR ESRG H D+
Sbjct: 531 CALQTIYGAEARKESRGAHAREDYK 555
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 305 bits (782), Expect = 4e-95
Identities = 98/625 (15%), Positives = 181/625 (28%), Gaps = 139/625 (22%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGT-----VAVITKAEPHESNTNYAQG-GVSAVLC---- 132
D +IG G +G A E A V ++ KA S ++ +
Sbjct: 23 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGR 82
Query: 133 --PSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLA- 189
+++E +++ + L ++ V + G + DG
Sbjct: 83 SERQNTLEDYVRYVTLDMMGLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYVREG 142
Query: 190 ----REGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAV 245
G S+ I+ A +++E F +LL +
Sbjct: 143 QWQIMIHGESYKPIIAEAAKMAVG-------------EENIYERVFIFELLKD-NNDPNA 188
Query: 246 CHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTN---------PLVATGDGMAMAH 296
G +V + F +K +LA+GGA ++ + + TG G M
Sbjct: 189 VAGAVGFSVREPKFYVFKAKAVILATGGATLLFRPRSTGEAAGRTWYAIFDTGSGYYMGL 248
Query: 297 RAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPL 356
+A A+++ E +F P D P + N E ++
Sbjct: 249 KAGAMLTQFEH-RFIPFRFKDGYGP------------VGAWFLFFKCKAKNAYGEEYIKT 295
Query: 357 YDER---------AELAPRDVVARSIDDQLKKRN--------------EKYVLLDISHKP 393
A+ P + + ++ N + H
Sbjct: 296 RAAELEKYKPYGAAQPIPTPLRNHQVMLEIMDGNQPIYMHTEEALAELAGGDKKKLKHIY 355
Query: 394 TEKILSHFPNIAAECLKY---GLDITSQPIPVVPAAHYMCGGV----------------- 433
E ++ L + +D QP PA Y+ G
Sbjct: 356 EEAFEDFLDMTVSQALLWACQNIDPQEQPSEAAPAEPYIMGSHSGEAGFWVCGPEDLMPE 415
Query: 434 ------RAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487
T V+GL+ G+ A H + +S S E + A+ AV+ ++ K
Sbjct: 416 EYAKLFPLKYNRMTTVKGLFAIGDCAGANPH---KFSSGSFTEGRIAAKAAVRFILEQKP 472
Query: 488 STSI---------DLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIV 538
+ I + + + ++ + LQ IM Y +
Sbjct: 473 NPEIDDAVVEELKKKAYAPMERFMQYKDLSTADDVNPEYILPWQGLVRLQKIMDEYAAGI 532
Query: 539 RST-----TSLQTAEWRIDELEAEWETYLFEHGWEQTFVG-------LEACEMRNLFCCA 586
+ LQ A + L+ + E + + A E+ + A
Sbjct: 533 ATIYKTNEKMLQRALELLAFLKEDLEK-----------LAARDLHELMRAWELVHRVWTA 581
Query: 587 KLVVSSALARHESR--GLHYMVDFP 609
+ V L R E+R G +Y D+P
Sbjct: 582 EAHVRHMLFRKETRWPGYYYRTDYP 606
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 274 bits (701), Expect = 3e-83
Identities = 88/614 (14%), Positives = 159/614 (25%), Gaps = 96/614 (15%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL------CPSD 135
D ++G G+ A E + A K + + G V+ L +
Sbjct: 23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERSGAVAQGLSAINTYLGDN 82
Query: 136 SVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIG-ASFDRGEDGNL-------- 186
+ + +++ L ++ + + D + G + + E G+
Sbjct: 83 NADDYVRMVRTDLMGLVREDLIYDLGRHVDDSVHLFEEWGLPVWIKDEHGHNLDGAQAKA 142
Query: 187 --HLAREGGHSHHRIVHAADMTGREIERALLEAVV-SDPNISVFEHHFAIDLLTTLDGPD 243
R G + G + + EA + + E F + LL
Sbjct: 143 AGKSLRNGDKPVRSGRWQIMINGESYKVIVAEAAKNALGQDRIIERIFIVKLLLD-KNTP 201
Query: 244 AVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYP---------STTNPLVATGDGMAM 294
G N+ EV F + ++A GGA ++Y P+ G M
Sbjct: 202 NRIAGAVGFNLRANEVHIFKANAMVVACGGAVNVYRPRSVGEGMGRAWYPVWNAGSTYTM 261
Query: 295 AHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFM 354
+ A ++ ME +F P D P+ +G+ N M +
Sbjct: 262 CAQVGAEMTMMEN-RFVPARFKDGYGPVGAWFLLFK--AKATNCKGEDYCATNRAMLKPY 318
Query: 355 PLYD-ERAELAPRDVVARSI---------------DDQLKKRNEKYVLLDISHKPTE--- 395
+ + P + + L+ H E
Sbjct: 319 EERGYAKGHVIPTCLRNHMMLREMREGRGPIYMDTKTALQTSFATMSPAQQKHLEAEAWE 378
Query: 396 KILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGG----------------------- 432
L A + ++P Y+ G
Sbjct: 379 DFLDMCVGQANLWAATNCAPEERGSEIMPTEPYLLGSHSGCCGIWASGPDEAWVPEDYKV 438
Query: 433 ---VRAGLQGETNVRGLYVAGEVACTGLHGA-------NRLASNSLLEALVFARRAVQPS 482
T V GL+ + H R+ ++ + + +P
Sbjct: 439 RAANGKVYNRMTTVEGLWTCADGVGASGHKFSSGSHAEGRIVGKQMVRWYL-DHKDFKPE 497
Query: 483 IDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVR--- 539
L ++ + C V++ K L Y G V
Sbjct: 498 FVETAEELKTLIYRPYYNYEKGKGASTCPVVNPEYISPKNFMMRLIKCTDEYGGGVGTYY 557
Query: 540 --STTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARH 597
S L T W ++ LE + L E + +L + R
Sbjct: 558 NTSKALLDTGFWLMEMLEEDSLKL----AARDLHELLRCWENYHRLWTVRLHMQHIAFRE 613
Query: 598 ESR--GLHYMVDFP 609
ESR G +Y DF
Sbjct: 614 ESRYPGFYYRADFL 627
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 270 bits (693), Expect = 8e-83
Identities = 109/465 (23%), Positives = 171/465 (36%), Gaps = 100/465 (21%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCP-------S 134
D V+GSG AG A+ G V +I K N A GG++A +
Sbjct: 127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKIT 186
Query: 135 DSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGH 194
DS E +DT+ G + D V+V+ + D + + A+GA + GG
Sbjct: 187 DSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTD-------VGMMGGA 239
Query: 195 SHHR--IVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTL 252
S +R G + + L + V NI + + I++L G G+
Sbjct: 240 SVNRAHRPTGGAGVGAHVVQVLYDNAVKR-NIDLRMNTRGIEVLKDDKG---TVKGILVK 295
Query: 253 NVETQEVVRFISKVTLLASGGAGHIYP------------STTNPLVATGDGMAMAHRAQA 300
+ + +LA+GG +TN A GDG+ +A A
Sbjct: 296 GMYKGYY-WVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGG 354
Query: 301 VISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER 360
+ +M+++Q HPT G ++TEAVRG+G IL N +RF+
Sbjct: 355 ALKDMQYIQAHPTLSVKGG------------VMVTEAVRGNGAILVNREGKRFV------ 396
Query: 361 AELAPRDVVARSI------------DDQLKKRN---EKYV-------------LLDISHK 392
E+ RD + +I DD ++K +KY+ L +
Sbjct: 397 NEITTRDKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGI 456
Query: 393 PTEKILSHFPNIAAECLK----------YGLDITSQP---IPVVPAAHYMCGGVRAGLQG 439
+ + + + I V P H+ GGV +
Sbjct: 457 DGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKA 516
Query: 440 E------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRA 478
E + GLY AGEV G+HGANRL N++ + + F R A
Sbjct: 517 EVMNAKKQVIPGLYGAGEVTG-GVHGANRLGGNAISDIITFGRLA 560
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 263 bits (674), Expect = 5e-80
Identities = 115/468 (24%), Positives = 176/468 (37%), Gaps = 101/468 (21%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCP-------S 134
D +IGSG AGL A+ G V ++ K NT A GG++A
Sbjct: 127 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIE 186
Query: 135 DSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGH 194
D + + DT+ G + D E V+V+ D I L ++GA + R GG
Sbjct: 187 DKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTD-------VGRMGGA 239
Query: 195 SHHR--IVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTL 252
S +R G + + L + V + + + +L G GV
Sbjct: 240 SVNRSHRPTGGAGVGAHVAQVLWDNAVKR-GTDIRLNSRVVRILEDASG---KVTGVLVK 295
Query: 253 NVETQEVVRFISKVTLLASGGAGHIYP------------STTNPLVATGDGMAMAHRAQA 300
T V + ++A+GG TN ATGDG+ +A +A A
Sbjct: 296 GEYTGYYV-IKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGA 354
Query: 301 VISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER 360
+++++Q HPT G +ITEAVRG+G I+ N RFM
Sbjct: 355 ATRDLQYIQAHPTYSPAGG------------VMITEAVRGNGAIVVNREGNRFM------ 396
Query: 361 AELAPRDVVARSIDDQ---------------LKKRNEKYVLLDISHK-PTEKILSHFPNI 404
E+ RD + +I Q K E YV L+I + T + L+ ++
Sbjct: 397 NEITTRDKASAAILQQKGESAYLVFDDSIRKSLKAIEGYVHLNIVKEGKTIEELAKQIDV 456
Query: 405 AAECLK----------------------YGLDITSQP---IPVVPAAHYMCGGVRAGLQG 439
A L ++ P + + PA H+ GG+ +
Sbjct: 457 PAAELAKTVTAYNGFVKSGKDAQFERPDLPRELVVAPFYALEIAPAVHHTMGGLVIDTKA 516
Query: 440 E-------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQ 480
E + GLY AGEV G+HGANRL N++ + + + R A
Sbjct: 517 EVKSEKTAKPITGLYAAGEVTG-GVHGANRLGGNAISDIVTYGRIAGA 563
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 223 bits (569), Expect = 6e-65
Identities = 122/543 (22%), Positives = 195/543 (35%), Gaps = 123/543 (22%)
Query: 13 HFGGIRCKGQSCQQASLVSSLTFNGCIQRELSWFLRFQRFNFSHSPVSENW--KSLRTVP 70
H G I C SC + N C F+ P S+ KS
Sbjct: 59 HLGDINCT--SCHKGHEEPKFYCNEC-----------HSFDIKPMPFSDAKKKKSWDDGW 105
Query: 71 VLSCLRDGSVKYFDFS----VIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG 125
++ + V+G+G AG +L K G V ++ KA N+ + G
Sbjct: 106 DQDKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAG 165
Query: 126 GVSAVLCP-------SDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASF 178
G++AV D VE ++D + G D + V ++ + D ++ L ++GA+
Sbjct: 166 GMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANL 225
Query: 179 DRGEDGNLHLAREGGHSHHR--IVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 236
D L R GG R H +G EI L +A I + + L+
Sbjct: 226 DD-------LKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQ-GIDTRLNSRVVKLV 277
Query: 237 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGG-----------AGHIYP-STTNP 284
D G T + +K +LA+GG + +++N
Sbjct: 278 VNDDH---SVVGAVVHGKHTGYYMI-GAKSVVLATGGYGMNKEMIAYYRPTMKDMTSSNN 333
Query: 285 LVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGI 344
+ ATGDG+ MA A ++++++VQ HPT D LI+E VRG G +
Sbjct: 334 ITATGDGVLMAKEIGASMTDIDWVQAHPTVGKDSR------------ILISETVRGVGAV 381
Query: 345 LYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFP-- 402
+ N RF+ +EL RD + +I Q +++ D K++ +
Sbjct: 382 MVNKDGNRFI------SELTTRDKASDAILKQ--PGQFAWIIFDNQLYKKAKMVRGYDHL 433
Query: 403 ----------------NIAAECLK----------------------YGLDITSQP---IP 421
+ L L++T P +
Sbjct: 434 EMLYKGDTVEQLAKSTGMKVADLAKTVSDYNGYVASGKDTAFGRADMPLNMTQSPYYAVK 493
Query: 422 VVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFA 475
V P H+ GGV + GL+ AGEV G+HG NRL N++ + +VF
Sbjct: 494 VAPGIHHTMGGVAINTTASVLDLQSKPIDGLFAAGEVTG-GVHGYNRLGGNAIADTVVFG 552
Query: 476 RRA 478
R A
Sbjct: 553 RIA 555
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 145 bits (368), Expect = 2e-37
Identities = 75/496 (15%), Positives = 132/496 (26%), Gaps = 135/496 (27%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPS------- 134
D V G G+AG+ ++E A+ G V V+ + T A G +
Sbjct: 42 ADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGATALAGGFIYLGGGTPLQKACGF 101
Query: 135 -DSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGN-------- 185
DS E+ + A D+E + C + L+ G F G
Sbjct: 102 DDSPENMKTFMMAALGPGADEEKITDYCEGSVEHYNWLVDCGVPFKESFWGEPGWEPPFD 161
Query: 186 LHLAREGGHSHHRIVHAADM------------------TGREIERALLEAVVSDPNISVF 227
L GG + A G + + L+E +
Sbjct: 162 DGLMYSGGENAAPFNEIAAPAPRGHVPQMDGKRTGEKGGGYMLMKPLVETA-EKLGVRAE 220
Query: 228 EHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH----------- 276
L+T G V G+ + VR + +LA+G +
Sbjct: 221 YDMRVQTLVTDDTG--RVV-GIVAKQYGKEVAVR-ARRGVVLATGSFAYNDKMIEAHAPR 276
Query: 277 -IYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLIT 335
I G + MA A +++M+ +
Sbjct: 277 LIGRPGAAIEEHDGRSILMAQALGADLAHMDATEVAFVCDPQL----------------- 319
Query: 336 EAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTE 395
GIL N +R++ E + + + N+ ++++D +
Sbjct: 320 ----IVRGILVNGRGQRYV------PEDTYSGRIGQMTLFH--QDNQAFLIIDEASYEEG 367
Query: 396 KILSHFPNIAA----------ECL--KYGLD----------------------------- 414
+ E L GL
Sbjct: 368 AAATTATPFLRVQPKWAAETVEELESDMGLPAGALQSTVEVYNKHAAEGSDPLLHKKSEW 427
Query: 415 --ITSQP---IPVVPAA-HYMCGGVRAGLQGE---TN---VRGLYVAGEVACTGLHGANR 462
P + + + GG+R + E + + GL+ AG G+
Sbjct: 428 VKPIGTPVAALDLRGFTLGFTLGGLRTTVNSEVLHVSGEPIPGLFAAGRCTS-GVCAGGY 486
Query: 463 LASNSLLEALVFARRA 478
+ SL + + RRA
Sbjct: 487 ASGTSLGDGSFYGRRA 502
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 3e-07
Identities = 107/626 (17%), Positives = 188/626 (30%), Gaps = 210/626 (33%)
Query: 4 GVAARTSNFHFGGIRCKGQSCQQASLVSSLTFNGCIQRELSWFLRFQRFNFSHSPVSENW 63
+ R G + LV + +F Q L+ ++FN +E +
Sbjct: 3 AYSTRPLTLSHGSLEH-------VLLVPTASFFIASQ------LQ-EQFNKILPEPTEGF 48
Query: 64 KS---LRTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNT 120
+ T L K+ + V+ L +E +K G + E
Sbjct: 49 AADDEPTTPAELV------GKFLGY------VSSL---VEPSKVGQFDQVLNLCLTEFEN 93
Query: 121 NYAQGG-----VSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIG 175
Y +G + +L +D+ ++ I Y+ T R++ D+
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIKN--YI----TARIMAKRPFDKKSN----S 143
Query: 176 ASFDRGEDGNLHLARE-GG---------------HSHHRIVHAADMTGREIERA--LLEA 217
A F +GN L GG ++H +V I+ + L
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL------IKFSAETLSE 197
Query: 218 VVSDPN--ISVFEHHFAIDLLTTLDGPDAVCHGVDTL---------NVETQEVVRFISKV 266
++ VF +++L L+ P D L Q + ++ V
Sbjct: 198 LIRTTLDAEKVFTQ--GLNILEWLENPSNT-PDKDYLLSIPISCPLIGVIQ-LAHYV--V 251
Query: 267 TLLASGGAGHIYPSTTNPLV--ATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKP 324
T G P + ATG +Q ++ TA+A I
Sbjct: 252 TAKLLG----FTPGELRSYLKGATG-------HSQGLV----------TAVA-----IAE 285
Query: 325 KKTRENSFL--ITEAVRGDGGILYNLGME--RFMPLYD----------ERAELAP----- 365
+ E SF + +A+ +L+ +G+ P E E P
Sbjct: 286 TDSWE-SFFVSVRKAIT----VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 366 -RDVVARSIDDQLKKRNEKYVLLDISHKPTEK-------------ILSHFP------NIA 405
++ + D + K N SH P K ++S P N+
Sbjct: 341 ISNLTQEQVQDYVNKTN--------SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 406 AECLK--YGLDITSQP------------IPV-VPA-AHYMCGGVRAGLQGETNVRGLYVA 449
K GLD + P +PV P +H + + + +
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL-VPASDLINKDLVKNNVSFN 451
Query: 450 GE-----VACTGLHGAN-RLASNSLLEALV--FARRAVQ-PSIDHKKSTSI--------- 491
+ V T G++ R+ S S+ E +V R V+ + K+T I
Sbjct: 452 AKDIQIPVYDTF-DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGAS 510
Query: 492 ---DLSASNW---WTRTVVPKSLGCN 511
L+ N R +V +L N
Sbjct: 511 GLGVLTHRNKDGTGVRVIVAGTLDIN 536
Score = 47.4 bits (112), Expect = 2e-05
Identities = 55/273 (20%), Positives = 84/273 (30%), Gaps = 102/273 (37%)
Query: 291 GMAMAHR-----AQAV-------------ISNMEFVQFHPTALADEGLPIKPKKTRENSF 332
GM M AQ V S ++ V +P L K K+ REN
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 333 LITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHK 392
+ DG L E+ +E + RS L
Sbjct: 1690 AMIFETIVDG----KLKTEKIFKEINEHS----TSYTFRSEKGLLSA------------- 1728
Query: 393 PTEKILSHF--PNIAA------ECLK-YGLDITSQPIPVVPAAHYMCGGVRAG--LQGET 441
T+ F P + E LK GL +PA AG L GE
Sbjct: 1729 -TQ-----FTQPALTLMEKAAFEDLKSKGL---------IPADATF-----AGHSL-GE- 1766
Query: 442 NVRGLYVAGEVACTGLHGANRLASNSLLEALVFAR-RAVQPSI--DHKKSTSIDLSASNW 498
Y A +A A+ ++ SL+E +VF R +Q ++ D ++ + A
Sbjct: 1767 -----YAA--LASL----ADVMSIESLVE-VVFYRGMTMQVAVPRDELGRSNYGMIA--- 1811
Query: 499 WTRTVVPKS--LGCN------VMHNILRRTKEV 523
+ P + V+ + +RT +
Sbjct: 1812 ----INPGRVAASFSQEALQYVVERVGKRTGWL 1840
Score = 36.2 bits (83), Expect = 0.044
Identities = 37/200 (18%), Positives = 61/200 (30%), Gaps = 67/200 (33%)
Query: 12 FHFGGIRCKGQSCQQASLVSSLTFNGCIQRELSWFLRFQRFNFSHSPVSENWKS----LR 67
HFGG KG+ ++ S++ F + +L F+ N + + ++S L
Sbjct: 1674 IHFGGE--KGKRIRE--NYSAMIFETIVDGKLKTEKIFKEINEHSTSYT--FRSEKGLLS 1727
Query: 68 ----TVPVL-----SCLRD----GSVKYFDFSVIGSGVAGL---------CYA----LE- 100
T P L + D G + AG A +E
Sbjct: 1728 ATQFTQPALTLMEKAAFEDLKSKGLIPADAT------FAGHSLGEYAALASLADVMSIES 1781
Query: 101 ----VAKHGTVAVITKAEPHESN--TNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDD 154
V G + A P + +NY G+ A+ P + A
Sbjct: 1782 LVEVVFYRG--MTMQVAVPRDELGRSNY---GMIAIN-PG---------RVAAS---FSQ 1823
Query: 155 ETVRVVCTEGPDRIRELIAI 174
E ++ V R L+ I
Sbjct: 1824 EALQYVVERVGKRTGWLVEI 1843
Score = 29.2 bits (65), Expect = 5.6
Identities = 46/296 (15%), Positives = 96/296 (32%), Gaps = 97/296 (32%)
Query: 375 DQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVR 434
QL+++ I +PTE AA+ D + P +V ++
Sbjct: 31 SQLQEQ-----FNKILPEPTE-------GFAAD------DEPTTPAELV--GKFLG---- 66
Query: 435 AGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSID-HKKSTSIDL 493
YV+ V + + +++ + L E F ++ D H + + L
Sbjct: 67 ------------YVSSLVEPSKVGQFDQVLNLCLTE---FENCYLE-GNDIH--ALAAKL 108
Query: 494 SASNWWTRTVVPKSLGCNVMHNILRR--------TKEVRKELQSIMWRYVGIVRSTTSL- 544
N T + K+ +++ + K+ S ++R VG L
Sbjct: 109 LQEN---DTTLVKT------KELIKNYITARIMAKRPFDKKSNSALFRAVG--EGNAQLV 157
Query: 545 -----Q-TAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHE 598
Q + +EL ++TY H + A + L + + + +
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTY---HVLVGDLIKFSAETLSEL---IRTTLDA--EKVF 209
Query: 599 SRGLH---------------YMVDFPHVEENKRLPTIILPSLVNCTWSSRQLHKLP 639
++GL+ Y++ P + P I + L + +++ L P
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIP-IS----CPLIGVIQLAHYVVTAKLLGFTP 260
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 6e-06
Identities = 74/531 (13%), Positives = 159/531 (29%), Gaps = 172/531 (32%)
Query: 194 HSHHRI---VHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT------LDGPDA 244
H HH + ++I +A V + + + +L+ + DA
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD-MPKSILSKEEIDHIIMSKDA 60
Query: 245 VCHG---VDTLNVETQEVV-RFISKV-----TLLAS---------GGAGHIYPSTTNPLV 286
V TL + +E+V +F+ +V L S +Y + L
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 287 ATGDGMAMAH--RAQAV---------ISNMEFVQFHPTALADEGLPIKPKKTRENSFLIT 335
A + R Q + + V G+ K +++
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-------GVLGSGK-----TWVAL 168
Query: 336 EAVRG-------DGGILY-NLG--------ME-------RFMPLYDERAELAPR-DVVAR 371
+ D I + NL +E + P + R++ + +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 372 SIDDQLKK--RNEKY-----VLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVP 424
SI +L++ +++ Y VLL++ + K + F N++ + L +T++ V
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNA---KAWNAF-NLSCKIL-----LTTRFKQV-- 277
Query: 425 AAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEAL-VFARRAVQPSI 483
++ + + + L E + + +
Sbjct: 278 -TDFLSAATTTHISLDHHSMTLTPD--------------------EVKSLLLK-----YL 311
Query: 484 DHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTS 543
D + DL T P ++ I ++ + W++V + TT
Sbjct: 312 DCRPQ---DLPRE---VLTTNP--RRLSI---IAESIRDGLATWDN--WKHVNCDKLTTI 358
Query: 544 LQTAEWRIDELE-AEWETY-----LFEHG-----------WEQTFVGLEACEMRNLFCCA 586
++++ ++ LE AE+ +F W +++ M +
Sbjct: 359 IESS---LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD---VIKSDVMVVV---N 409
Query: 587 KLVVSSALARHESRGLHYMVDFPHVEENKRLPTIILPSLVNCTWSSRQLHK 637
KL S + + +P+I L V + LH+
Sbjct: 410 KLHKYSLVEKQPKESTIS------------IPSIYLELKVKLE-NEYALHR 447
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 37.2 bits (87), Expect = 0.012
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 61 ENWKSLRTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHGT-VAVITKAEPHESN 119
+ + + + ++++ VIG G+ G A +AK A+
Sbjct: 3 HHHHHMARIRAMK-------RHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRT 55
Query: 120 TNYAQGGVSA 129
T+ A G + A
Sbjct: 56 TSAAAGMLGA 65
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 35.9 bits (82), Expect = 0.041
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 116
K FD+ ++G+G AG A +A G V ++ + PH
Sbjct: 28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDR-RPH 63
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics,
northeast structural genomics consortiu PSI-biology; NMR
{Lactobacillus plantarum}
Length = 160
Score = 33.8 bits (78), Expect = 0.067
Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 6/43 (13%)
Query: 334 ITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQ 376
++ G I N +R + E +I Q
Sbjct: 13 ASKQATDMGAIYVNSKGDRIV------NESNVYTTFRNAILKQ 49
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 35.0 bits (80), Expect = 0.072
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 116
K ++G+G +G ++A+ G V +I + H
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQ-RDH 37
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium
toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A*
1c0k_A*
Length = 363
Score = 34.7 bits (79), Expect = 0.087
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 87 VIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL 131
V+GSGV GL AL +A+ G +V ++ + P + ++ +
Sbjct: 11 VLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWAGAN 56
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 34.6 bits (80), Expect = 0.097
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITK-AEPHESNTNYAQGGV 127
FD V+G+G G+ ++AK G ++ PH + +++ +
Sbjct: 4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRI 50
>3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint
center for STR genomics, JCSG, protein structure
initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium
loti}
Length = 136
Score = 33.0 bits (75), Expect = 0.11
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 194 HSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT--LDGPDAVCHGVD 250
H HH ++ MT EI + E + N E + A D+ + ++GP AV HG +
Sbjct: 9 HHHHENLYFQGMTIAEIAKDFTELLKQGDNAGAAEKYNADDIASYEAMEGPMAVSHGKE 67
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 34.1 bits (79), Expect = 0.13
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGT-VAVITKAEPHESNTNYAQGG 126
FD VIG G GL A E A+ G VAV EP T + GG
Sbjct: 7 FDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGG 51
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands,
dimer, cavity, oxidoreductase; 2.30A {Pseudomonas
putida}
Length = 430
Score = 33.7 bits (76), Expect = 0.17
Identities = 31/137 (22%), Positives = 47/137 (34%), Gaps = 12/137 (8%)
Query: 87 VIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTI 145
++G+G AGL L + +H V V T +P E Y+ + + +
Sbjct: 27 IVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDE----YSGLRLLNTVAHNAVTVQREVALD 82
Query: 146 VAG-AYLCDDETVRVVCTEGPDRIR---ELIAIGASFD-RGEDGNL--HLAREGGHSHHR 198
V GP +R +L A + D R L L GG +
Sbjct: 83 VNEWPSEEFGYFGHYYYVGGPQPMRFYGDLKAPSRAVDYRLYQPMLMRALEARGGKFCYD 142
Query: 199 IVHAADMTGREIERALL 215
V A D+ G + LL
Sbjct: 143 AVSAEDLEGLSEQYDLL 159
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 33.7 bits (78), Expect = 0.19
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGT-VAVITKAEPHESNTNYAQGG 126
+D +IG G GL A E A++G V V+ P T + GG
Sbjct: 33 YDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGG 77
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 33.5 bits (77), Expect = 0.24
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 70 PVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHGT-VAVITKAEPHESNTNYAQGG 126
L+ + + S +D VIG G GL E AK+G AV+ EP T + GG
Sbjct: 95 DELAGIVNESKYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGG 152
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 33.1 bits (75), Expect = 0.25
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 116
+D+ ++GSG+ G A E+ K V VI K H
Sbjct: 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEK-RNH 35
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN;
2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 32.4 bits (73), Expect = 0.47
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 81 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPH 116
FD V+GSG GL A VA V V+ + PH
Sbjct: 6 ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLER-RPH 42
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET:
FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 32.4 bits (73), Expect = 0.48
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 7/64 (10%)
Query: 87 VIGSGVAGLCYALEVAKHG-------TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVES 139
VIG+GV GL AL + + + V + T+ A G L ++ +
Sbjct: 5 VIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPNNPQE 64
Query: 140 HMQD 143
Sbjct: 65 ADWS 68
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 32.1 bits (72), Expect = 0.57
Identities = 16/112 (14%), Positives = 40/112 (35%), Gaps = 23/112 (20%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQ 142
+D V+G+G+ + ++ +G + + N Y GG S+ + P + + Q
Sbjct: 7 YDVIVLGTGLTECILSGIMSVNGKKVLHM-----DRNPYY--GGESSSITPLEELYKRFQ 59
Query: 143 DT----------------IVAGAYLCDDETVRVVCTEGPDRIRELIAIGASF 178
++ + + + V+++ R + + SF
Sbjct: 60 LLEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSF 111
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.66
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 22/52 (42%)
Query: 255 ETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNME 306
E Q + + + + L A A P A+A +A ME
Sbjct: 18 EKQALKKLQASLKLYADDSA----P-------------ALAIKAT-----ME 47
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 31.7 bits (72), Expect = 0.68
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGT-VAVITKAEP 115
+D V+G G GL A +VA+ G V V+ +
Sbjct: 5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHTF 38
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 31.7 bits (73), Expect = 0.72
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGT-VAVITKAE 114
D VIG+GV GL A +A G V V AE
Sbjct: 5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE 37
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 31.7 bits (73), Expect = 0.78
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114
+Y + +IG+G AGL A ++AK G +V V +
Sbjct: 3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGK 37
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 31.2 bits (71), Expect = 0.95
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE-PHESNTNYAQGGV 127
+D +IGSG G + G V + PH+ +++ +
Sbjct: 3 YDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHHGDTRL 49
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 31.4 bits (72), Expect = 1.1
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114
+ ++D VIG G +GL A+ A+ G V ++ K
Sbjct: 23 NAMHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN 59
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 31.3 bits (70), Expect = 1.2
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 46 FLRFQRFNF-SHSPVSENWKSLRTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKH 104
F F + +F S + + SL +P G +D ++GSG G YA E+
Sbjct: 9 FFNFAKSSFRSAAAQKASASSLPPLPGPDKKVPGMDIKYDVVIVGSGPIGCTYARELVGA 68
Query: 105 G-TVAVI 110
G VA+
Sbjct: 69 GYKVAMF 75
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 31.0 bits (69), Expect = 1.4
Identities = 11/56 (19%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSD 135
+++D ++G+G+ + ++ +G + V+ + N Y GG +A L ++
Sbjct: 19 EHYDVIILGTGLKECILSGLLSHYGKKILVL------DRNPYY--GGETASLNLTN 66
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 31.0 bits (69), Expect = 1.5
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 87 VIGSGVAGLCYALEVAKHG-TVAVITKAEPH 116
+IG+G GL A+ + + G + +
Sbjct: 14 IIGAGPTGLGAAVRLTELGYKNWHLYECNDT 44
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 30.8 bits (69), Expect = 1.6
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 87 VIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNY-AQGGVSAVLCPSDSVESHM 141
VIG G GL L +A+ G ++ + + T L P +V+
Sbjct: 112 VIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGE 168
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 30.7 bits (70), Expect = 1.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 84 DFSVIGSGVAGLCYALEVAKHGTVAVI 110
D+ VIG+G+AG ++ HG V V+
Sbjct: 11 DYLVIGAGIAGASTGYWLSAHGRVVVL 37
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 30.4 bits (69), Expect = 1.8
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVI 110
++ +D V+G G G A AK+G +I
Sbjct: 2 METYDVLVVGGGPGGSTAARYAAKYGLKTLMI 33
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate
porphyria disease, VP oxidoreductase-oxidoreductase
inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 30.4 bits (68), Expect = 1.8
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 87 VIGSGVAGLCYALEVAKHGTVAVIT 111
V+G G++GL + +++ +
Sbjct: 7 VLGGGISGLAASYHLSRAPCPPKVV 31
>3ejv_A Uncharacterized protein with cystatin-like fold; structural
genomics, joint center for ST genomics, JCSG; HET: MSE
PGE; 1.40A {Novosphingobium aromaticivorans dsm
12ORGANISM_TAXID} SCOP: d.17.4.28
Length = 179
Score = 29.7 bits (65), Expect = 1.8
Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
Query: 140 HMQDTIVAGAYLCDDETVRVVC---TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSH 196
H ++ G + D+ + V T DR R+ A+ A F + + + G +
Sbjct: 11 HHENLYFQGMTMADETIILNVLGQYTRAHDR-RDPDAMAALF--APEATIEIVDAVGGAS 67
Query: 197 HRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVC 246
I + GR+ R + +++ + + + ++G AV
Sbjct: 68 RSISR---LEGRDAIRVAVRQMMAPHGYRAWSQNVVNAPIIVIEGDHAVL 114
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 30.3 bits (69), Expect = 1.9
Identities = 16/151 (10%), Positives = 37/151 (24%), Gaps = 37/151 (24%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHM 141
D + G G+ G A + + G V V+ +A A G + V +
Sbjct: 7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRE-----RAINGADLLKPAGIRV---V 58
Query: 142 Q-----DTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSH 196
+ + + + F+
Sbjct: 59 EAAGLLAEVTRRG----------GRVRHELEVYHDGELLRYFNYSSVDARGY----FI-- 102
Query: 197 HRIVHAADMTGREIERALLEAVVSDPNISVF 227
++ + R +LE + + + +
Sbjct: 103 --LMPC-----ESLRRLVLEKIDGEATVEML 126
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 30.2 bits (69), Expect = 2.0
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 431 GGVRAGLQGETNVRGLYVAGEVACTGLH 458
G G T+ + +Y+AGE G
Sbjct: 252 GTFVIDDFGRTSEKNIYLAGETTTQGPS 279
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc; HET: FDA; 2.51A
{Sinorhizobium meliloti}
Length = 417
Score = 30.2 bits (69), Expect = 2.0
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114
+ D +IG+G AG+ A+E K G V VI A
Sbjct: 24 VAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHAR 60
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 30.0 bits (68), Expect = 2.5
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 87 VIGSGVAGLCYALEVAKHG-TVAVI 110
VIG+G+ GL A ++K G V V
Sbjct: 5 VIGAGLGGLLSAARLSKAGHEVEVF 29
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan
biosynthesis, glutamine amidotransferase, allosteric
interaction, lyase; 2.50A {Sulfolobus solfataricus}
SCOP: c.23.16.1
Length = 195
Score = 29.4 bits (67), Expect = 2.6
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 6/28 (21%)
Query: 287 ATGDG--MAMAHRAQAVISNMEFVQFHP 312
+ D MA+ H + VQFHP
Sbjct: 153 SAEDNEIMAIHHEEYPI----YGVQFHP 176
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 30.0 bits (68), Expect = 2.7
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 87 VIGSGVAGLCYALEVAKHG 105
V+G+G+ GL +A++G
Sbjct: 5 VVGAGLGGLLAGAFLARNG 23
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine
synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus
KT}
Length = 432
Score = 29.9 bits (67), Expect = 2.7
Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 13/126 (10%)
Query: 281 TTNPLVATGDGMAMAH-RAQAVISNMEFVQFHPTALADEGLPIKPKK-----TRENS--F 332
P+ + + + + + A++ N + P L + P TR S F
Sbjct: 153 LLEPVRRKANRLELDNFDSCAILLNNDLSGGIPDILQGLEQSLIPPLHAGWATRRKSNHF 212
Query: 333 LITEAVRGDGGILYNLGMERFMPLYDERAEL-----APRDVVARSIDDQLKKRNEKYVLL 387
+ V + L ++ P +D L + +A +D L K KY
Sbjct: 213 TAYDRVVEEFAPLIDIDPWLLNPYFDTCGGLDFHARLGEEQLAEKVDSLLAKIRRKYAEY 272
Query: 388 DISHKP 393
+ +P
Sbjct: 273 GVKQEP 278
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 29.9 bits (67), Expect = 2.7
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 82 YFDFSVIGSGVAGLCYALEVAKHGTVAVI 110
D ++IG G AG+ ALE+ ++ TVA+I
Sbjct: 108 VVDVAIIGGGPAGIGAALELQQYLTVALI 136
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 29.9 bits (66), Expect = 2.8
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 87 VIGSGVAGLCYALEVAKHGTVAVI 110
++G+G+AGL + + G I
Sbjct: 49 IVGAGIAGLVAGDLLTRAGHDVTI 72
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 29.8 bits (66), Expect = 3.3
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 14/95 (14%)
Query: 22 QSCQQASLVSSLTFNGCIQRELSWFLRFQRFNFSHSPVSENWKSLRTVPVLSCLRDGSVK 81
++ Q + + R S+ R NF + + +T V+
Sbjct: 61 EATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVI--------- 111
Query: 82 YFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPH 116
+IGSGV+GL A ++ G + +A
Sbjct: 112 -----IIGSGVSGLAAARQLQSFGMDVTLLEARDR 141
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 29.8 bits (67), Expect = 3.3
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114
+D +IG G AG A ++++ G + ++
Sbjct: 7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKP 39
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 29.4 bits (67), Expect = 4.0
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH-ESNTNYAQGG 126
+D VIG G AGL A E +G VA + +P T + GG
Sbjct: 10 YDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGG 55
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 29.5 bits (65), Expect = 4.5
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 81 KYFDFSVIGSGVAGLCYALEVAKHGTVAVI 110
D VIG+G GL A + + + +
Sbjct: 9 ISVDVLVIGAGPTGLGAAKRLNQIDGPSWM 38
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 29.0 bits (66), Expect = 5.0
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGT-VAVI 110
+D+ IG G G+ A +G A+I
Sbjct: 5 YDYIAIGGGSGGIASINRAAMYGQKCALI 33
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 28.9 bits (63), Expect = 5.5
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKA 113
++IG+G+AGL A + G V + K+
Sbjct: 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKS 34
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase;
HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1
PDB: 1i7q_B 1i7s_B*
Length = 192
Score = 28.2 bits (64), Expect = 6.1
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 6/28 (21%)
Query: 287 ATGDG--MAMAHRAQAVISNMEFVQFHP 312
A +G MA+ H A V QFHP
Sbjct: 147 AHFNGMVMAVRHDADRV----CGFQFHP 170
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 28.9 bits (64), Expect = 6.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 87 VIGSGVAGLCYALEVAKHG 105
VIG+GV+GL A ++ HG
Sbjct: 18 VIGAGVSGLAAAYKLKIHG 36
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 28.8 bits (64), Expect = 6.6
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 87 VIGSGVAGLCYALEVAKHG 105
V+G G++GL A + G
Sbjct: 21 VVGGGISGLAVAHHLRSRG 39
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 28.6 bits (64), Expect = 6.7
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114
D VIG+G AG A V K G V ++ K +
Sbjct: 6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK 38
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 28.7 bits (63), Expect = 6.7
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQ 142
+D V+G+G+ + ++ G K + +Y GG +A + S E Q
Sbjct: 12 YDVIVLGTGITECILSGLLSVDG-----KKVLHIDKQDHY--GGEAASVTLSQLYEKFKQ 64
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 28.8 bits (63), Expect = 6.9
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 14/76 (18%)
Query: 38 CIQRELSWFLRFQRFNFSHSPVSENWKSLRTVPVLSCLRDGSVKYFDFSVIGSGVAGLCY 97
+ R S+ R NF + + +T V+ +IGSGV+GL
Sbjct: 248 LVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVI--------------IIGSGVSGLAA 293
Query: 98 ALEVAKHGTVAVITKA 113
A ++ G + +A
Sbjct: 294 ARQLQSFGMDVTLLEA 309
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 28.6 bits (65), Expect = 7.1
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVI 110
FD IG G GL A + A G VA+I
Sbjct: 5 FDLIAIGGGSGGLAVAEKAAAFGKRVALI 33
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase,
CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP:
a.100.1.1 c.2.1.6
Length = 478
Score = 28.4 bits (64), Expect = 7.5
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 84 DFSVIGSGVAGLCYALEVAKHG-TVAV--ITKAEPHESNTNYAQGGVSAVLCPSDSVES 139
D V+G GV G AL +A+ G VAV T ++ E A + L +++E+
Sbjct: 3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEA 61
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 28.8 bits (64), Expect = 7.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 82 YFDFSVIGSGVAGLCYALEVAKHG 105
+ D V+G+G AGL A E ++ G
Sbjct: 128 HTDVLVVGAGPAGLAAAREASRSG 151
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 28.3 bits (64), Expect = 8.2
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 83 FDFSVIGSGVAGLCYALEVAK-HG-TVAVITKAEPHESNTNYAQGG 126
+D VIG+G GL A H VAVI + H A GG
Sbjct: 4 YDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGG 49
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 28.4 bits (64), Expect = 8.5
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVI 110
+D VIG G G+ A A+H VA++
Sbjct: 3 YDLIVIGGGSGGMAAARRAARHNAKVALV 31
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 28.3 bits (63), Expect = 8.7
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 87 VIGSGVAGLCYALEVAKHG--TVAVI 110
+IG+G AGL + + + G ++
Sbjct: 11 IIGAGPAGLAAGMYLEQAGFHDYTIL 36
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 28.4 bits (63), Expect = 9.0
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 76 RDGSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114
R + ++IG G AG L + K G V + ++
Sbjct: 17 RGSHMTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSA 56
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 27.9 bits (63), Expect = 9.1
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 427 HYMCGGVRAGLQGETNVRGLYVAGEVA 453
M + +T RG++ G+VA
Sbjct: 241 GPMGSTIVTDPMKQTTARGIFACGDVA 267
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.409
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,099,863
Number of extensions: 638082
Number of successful extensions: 1711
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1597
Number of HSP's successfully gapped: 100
Length of query: 641
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 541
Effective length of database: 3,909,693
Effective search space: 2115143913
Effective search space used: 2115143913
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.7 bits)