Query 006534
Match_columns 641
No_of_seqs 596 out of 3748
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 00:41:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006534hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0465 HflB ATP-dependent Zn 100.0 8.4E-74 1.8E-78 637.4 37.5 414 181-627 23-438 (596)
2 KOG0731 AAA+-type ATPase conta 100.0 7.1E-68 1.5E-72 598.5 39.5 297 324-625 303-599 (774)
3 KOG0734 AAA+-type ATPase conta 100.0 7.4E-69 1.6E-73 576.4 25.7 294 323-626 295-588 (752)
4 CHL00176 ftsH cell division pr 100.0 5.8E-59 1.3E-63 530.0 41.0 420 179-627 48-470 (638)
5 COG1222 RPT1 ATP-dependent 26S 100.0 2.5E-58 5.4E-63 479.8 26.8 255 323-580 142-397 (406)
6 PRK10733 hflB ATP-dependent me 100.0 3.3E-54 7.1E-59 494.3 46.8 411 182-628 31-441 (644)
7 KOG0730 AAA+-type ATPase [Post 100.0 1.6E-55 3.5E-60 485.9 30.3 327 242-580 322-679 (693)
8 KOG0733 Nuclear AAA ATPase (VC 100.0 5E-54 1.1E-58 468.1 29.9 337 242-582 331-776 (802)
9 TIGR01241 FtsH_fam ATP-depende 100.0 4.5E-51 9.8E-56 456.4 36.6 300 321-627 44-343 (495)
10 CHL00206 ycf2 Ycf2; Provisiona 100.0 6E-48 1.3E-52 460.6 27.4 259 354-629 1619-1924(2281)
11 KOG0729 26S proteasome regulat 100.0 8.4E-46 1.8E-50 372.3 18.9 259 323-584 168-427 (435)
12 KOG0736 Peroxisome assembly fa 100.0 5.6E-45 1.2E-49 405.5 24.2 252 323-579 663-936 (953)
13 KOG0727 26S proteasome regulat 100.0 1.2E-44 2.5E-49 361.9 23.8 251 324-577 147-398 (408)
14 KOG0733 Nuclear AAA ATPase (VC 100.0 7.6E-45 1.6E-49 396.5 22.0 227 326-558 184-414 (802)
15 KOG0728 26S proteasome regulat 100.0 1.5E-44 3.3E-49 360.7 21.8 252 324-578 139-391 (404)
16 KOG0652 26S proteasome regulat 100.0 2.4E-44 5.3E-49 360.9 20.1 252 324-578 163-415 (424)
17 KOG0726 26S proteasome regulat 100.0 3.9E-44 8.5E-49 363.8 16.8 252 324-578 177-429 (440)
18 COG1223 Predicted ATPase (AAA+ 100.0 3.2E-43 6.9E-48 352.9 21.8 242 324-575 113-355 (368)
19 KOG0738 AAA+-type ATPase [Post 100.0 5E-43 1.1E-47 367.2 23.7 249 324-580 204-474 (491)
20 PTZ00454 26S protease regulato 100.0 8E-42 1.7E-46 371.6 29.3 252 324-578 137-389 (398)
21 PRK03992 proteasome-activating 100.0 1.5E-40 3.4E-45 361.3 28.8 256 324-582 123-379 (389)
22 TIGR01243 CDC48 AAA family ATP 100.0 1.8E-40 3.8E-45 386.9 29.4 251 324-579 445-714 (733)
23 KOG0735 AAA+-type ATPase [Post 100.0 1.7E-40 3.7E-45 366.9 23.6 226 327-558 662-888 (952)
24 COG0464 SpoVK ATPases of the A 100.0 3.1E-40 6.8E-45 368.8 25.9 299 273-577 180-485 (494)
25 PTZ00361 26 proteosome regulat 100.0 3.9E-40 8.4E-45 361.2 25.8 252 324-578 175-427 (438)
26 CHL00195 ycf46 Ycf46; Provisio 100.0 2.4E-38 5.2E-43 351.6 26.7 244 327-578 223-466 (489)
27 KOG0739 AAA+-type ATPase [Post 100.0 1.2E-39 2.6E-44 332.0 13.4 228 323-558 124-353 (439)
28 TIGR01242 26Sp45 26S proteasom 100.0 1.2E-37 2.6E-42 335.7 27.9 249 324-575 114-363 (364)
29 KOG0737 AAA+-type ATPase [Post 100.0 6.5E-38 1.4E-42 328.7 22.1 228 323-558 83-314 (386)
30 KOG0651 26S proteasome regulat 100.0 3.3E-38 7.1E-43 323.5 13.7 250 325-577 125-375 (388)
31 TIGR03689 pup_AAA proteasome A 100.0 1.6E-35 3.5E-40 329.2 26.6 254 322-579 172-482 (512)
32 KOG0741 AAA+-type ATPase [Post 100.0 7.1E-34 1.5E-38 306.6 15.7 251 326-578 213-493 (744)
33 KOG0732 AAA+-type ATPase conta 100.0 1.5E-33 3.2E-38 327.0 18.5 251 326-581 259-531 (1080)
34 KOG0730 AAA+-type ATPase [Post 100.0 6.7E-33 1.5E-37 307.0 20.9 238 327-578 180-419 (693)
35 TIGR01243 CDC48 AAA family ATP 100.0 4.2E-32 9E-37 316.7 26.0 247 326-578 172-438 (733)
36 PLN00020 ribulose bisphosphate 100.0 6E-32 1.3E-36 286.4 22.4 261 327-606 110-394 (413)
37 KOG0740 AAA+-type ATPase [Post 100.0 2.6E-31 5.6E-36 287.1 17.1 248 323-578 144-407 (428)
38 CHL00181 cbbX CbbX; Provisiona 99.9 3E-22 6.5E-27 210.0 22.0 212 331-556 22-255 (287)
39 TIGR02881 spore_V_K stage V sp 99.9 4E-22 8.7E-27 205.8 21.0 212 330-556 4-239 (261)
40 KOG0742 AAA+-type ATPase [Post 99.9 4.6E-22 9.9E-27 210.5 20.3 239 327-577 350-614 (630)
41 TIGR02880 cbbX_cfxQ probable R 99.9 8.1E-22 1.8E-26 206.4 21.0 211 333-557 23-255 (284)
42 PF00004 AAA: ATPase family as 99.9 8.6E-22 1.9E-26 179.3 13.3 130 368-502 1-132 (132)
43 KOG0743 AAA+-type ATPase [Post 99.9 2.9E-21 6.2E-26 208.3 17.7 207 328-547 197-412 (457)
44 TIGR00635 ruvB Holliday juncti 99.8 1.3E-19 2.8E-24 190.1 22.2 211 330-574 2-228 (305)
45 PRK00080 ruvB Holliday junctio 99.8 1E-19 2.2E-24 193.9 20.6 219 326-575 19-250 (328)
46 PF05496 RuvB_N: Holliday junc 99.8 2.7E-20 5.8E-25 186.9 13.3 197 322-552 14-226 (233)
47 KOG0744 AAA+-type ATPase [Post 99.8 1.7E-19 3.6E-24 187.0 14.7 242 331-576 141-415 (423)
48 COG2256 MGS1 ATPase related to 99.8 2.4E-18 5.2E-23 183.3 20.2 211 323-578 15-241 (436)
49 KOG0735 AAA+-type ATPase [Post 99.8 1.4E-18 3E-23 194.0 18.7 233 332-577 408-650 (952)
50 TIGR02902 spore_lonB ATP-depen 99.8 1.2E-18 2.5E-23 197.0 17.2 218 321-574 54-331 (531)
51 KOG0736 Peroxisome assembly fa 99.8 2.2E-18 4.8E-23 193.9 18.8 207 361-576 427-654 (953)
52 COG2255 RuvB Holliday junction 99.8 4E-18 8.6E-23 174.7 17.9 217 326-576 20-252 (332)
53 TIGR02639 ClpA ATP-dependent C 99.8 2.7E-18 5.9E-23 200.8 19.0 224 327-576 177-430 (731)
54 COG0464 SpoVK ATPases of the A 99.8 8.7E-18 1.9E-22 188.3 21.6 219 351-577 4-228 (494)
55 PRK00149 dnaA chromosomal repl 99.8 2.8E-17 6E-22 182.5 19.7 225 326-576 116-350 (450)
56 TIGR00763 lon ATP-dependent pr 99.8 1.1E-17 2.5E-22 196.7 17.0 220 332-573 320-584 (775)
57 PRK14962 DNA polymerase III su 99.7 5.5E-17 1.2E-21 180.8 20.3 207 324-573 6-240 (472)
58 PRK14956 DNA polymerase III su 99.7 5.8E-17 1.3E-21 179.2 20.3 213 323-572 9-243 (484)
59 TIGR00362 DnaA chromosomal rep 99.7 1.1E-16 2.4E-21 175.3 21.9 223 327-576 105-338 (405)
60 PRK11034 clpA ATP-dependent Cl 99.7 8.5E-17 1.8E-21 187.7 21.9 221 330-576 184-434 (758)
61 PRK13342 recombination factor 99.7 2.8E-16 6E-21 172.7 23.0 203 326-576 6-220 (413)
62 TIGR02928 orc1/cdc6 family rep 99.7 1.2E-15 2.6E-20 163.8 25.3 225 328-576 11-275 (365)
63 PRK04195 replication factor C 99.7 2.1E-16 4.7E-21 176.9 20.2 210 324-572 6-222 (482)
64 PRK14088 dnaA chromosomal repl 99.7 1.4E-16 3.1E-21 176.4 18.5 225 326-577 99-334 (440)
65 PRK14961 DNA polymerase III su 99.7 2.8E-16 6.1E-21 170.0 20.3 213 324-573 8-242 (363)
66 PRK06645 DNA polymerase III su 99.7 4.2E-16 9.1E-21 174.7 20.9 216 324-573 13-254 (507)
67 PRK14960 DNA polymerase III su 99.7 2.4E-16 5.2E-21 178.9 18.6 205 324-571 7-239 (702)
68 PRK00411 cdc6 cell division co 99.7 2.6E-15 5.6E-20 163.0 25.6 243 328-593 26-301 (394)
69 PRK06893 DNA replication initi 99.7 7.5E-16 1.6E-20 156.5 19.8 211 327-572 11-227 (229)
70 CHL00095 clpC Clp protease ATP 99.7 3.5E-16 7.5E-21 185.3 19.7 202 329-557 176-403 (821)
71 PRK12323 DNA polymerase III su 99.7 1.3E-16 2.7E-21 180.8 15.0 198 324-554 8-232 (700)
72 PRK07003 DNA polymerase III su 99.7 2.1E-16 4.6E-21 180.9 16.9 199 324-555 8-228 (830)
73 PRK14958 DNA polymerase III su 99.7 2.6E-16 5.7E-21 176.9 17.3 206 324-572 8-241 (509)
74 TIGR03420 DnaA_homol_Hda DnaA 99.7 5.6E-16 1.2E-20 155.2 17.7 206 327-572 10-225 (226)
75 PRK14086 dnaA chromosomal repl 99.7 1.1E-15 2.3E-20 173.3 21.0 226 326-577 282-517 (617)
76 PRK12422 chromosomal replicati 99.7 1.1E-15 2.3E-20 169.5 19.9 227 326-577 105-345 (445)
77 PRK07994 DNA polymerase III su 99.7 8.4E-16 1.8E-20 175.9 19.2 211 325-572 9-241 (647)
78 TIGR03345 VI_ClpV1 type VI sec 99.7 8.6E-16 1.9E-20 182.0 19.7 218 327-571 182-427 (852)
79 PRK14964 DNA polymerase III su 99.7 1.1E-15 2.4E-20 170.3 19.4 203 326-571 7-237 (491)
80 PRK13341 recombination factor 99.7 1.2E-15 2.6E-20 177.4 20.0 213 323-575 19-247 (725)
81 PRK14963 DNA polymerase III su 99.7 1.8E-15 3.9E-20 169.9 20.4 205 324-572 6-237 (504)
82 PRK12402 replication factor C 99.7 2.2E-15 4.8E-20 159.5 20.1 210 325-573 8-247 (337)
83 PRK14949 DNA polymerase III su 99.7 1.6E-15 3.5E-20 176.5 20.3 197 324-553 8-226 (944)
84 PRK10865 protein disaggregatio 99.7 1.3E-15 2.8E-20 180.8 19.9 166 327-518 173-356 (857)
85 PRK08903 DnaA regulatory inact 99.7 2.3E-15 5.1E-20 151.7 18.8 202 327-573 13-224 (227)
86 PRK08691 DNA polymerase III su 99.7 1.2E-15 2.6E-20 174.5 18.2 213 324-573 8-242 (709)
87 PRK05563 DNA polymerase III su 99.7 2.5E-15 5.4E-20 171.0 20.1 205 324-571 8-240 (559)
88 TIGR02397 dnaX_nterm DNA polym 99.7 2.4E-15 5.2E-20 160.7 18.6 207 324-573 6-240 (355)
89 PLN03025 replication factor C 99.7 2E-15 4.4E-20 160.4 17.8 202 324-570 5-218 (319)
90 PRK14951 DNA polymerase III su 99.7 2.4E-15 5.2E-20 171.7 18.8 211 325-572 9-246 (618)
91 KOG2028 ATPase related to the 99.7 4.9E-15 1.1E-19 155.9 18.9 254 322-619 128-414 (554)
92 PRK08084 DNA replication initi 99.7 1.1E-14 2.4E-19 148.6 21.1 206 327-572 17-233 (235)
93 PHA02544 44 clamp loader, smal 99.6 9.8E-15 2.1E-19 154.0 20.0 206 324-570 13-226 (316)
94 PRK14969 DNA polymerase III su 99.6 4.4E-15 9.6E-20 167.8 18.0 212 325-573 9-242 (527)
95 PRK14970 DNA polymerase III su 99.6 6.3E-15 1.4E-19 159.2 18.2 213 324-573 9-231 (367)
96 PRK14959 DNA polymerase III su 99.6 7.6E-15 1.6E-19 167.0 18.4 207 323-572 7-241 (624)
97 PRK14957 DNA polymerase III su 99.6 6.8E-15 1.5E-19 166.1 17.7 205 324-571 8-240 (546)
98 PRK14952 DNA polymerase III su 99.6 6.4E-15 1.4E-19 167.6 17.6 212 324-571 5-240 (584)
99 PF00308 Bac_DnaA: Bacterial d 99.6 1.1E-14 2.3E-19 147.3 17.4 201 327-555 3-216 (219)
100 PRK14965 DNA polymerase III su 99.6 6E-15 1.3E-19 168.4 17.1 205 324-571 8-240 (576)
101 PRK14087 dnaA chromosomal repl 99.6 1.7E-14 3.8E-19 160.2 20.3 222 328-575 111-348 (450)
102 PRK07133 DNA polymerase III su 99.6 1.5E-14 3.4E-19 166.6 20.3 211 324-571 10-239 (725)
103 PRK05896 DNA polymerase III su 99.6 1E-14 2.2E-19 165.2 18.5 210 324-570 8-239 (605)
104 PTZ00112 origin recognition co 99.6 1.8E-14 4E-19 165.8 20.5 220 332-578 755-1009(1164)
105 TIGR03346 chaperone_ClpB ATP-d 99.6 1.3E-14 2.9E-19 172.4 20.0 203 327-556 168-397 (852)
106 PRK07764 DNA polymerase III su 99.6 1.2E-14 2.6E-19 170.9 18.9 211 324-570 7-241 (824)
107 PRK14953 DNA polymerase III su 99.6 3.2E-14 6.8E-19 159.4 20.7 211 325-572 9-241 (486)
108 PRK05642 DNA replication initi 99.6 2.5E-14 5.5E-19 145.9 18.2 180 365-572 45-232 (234)
109 PRK08451 DNA polymerase III su 99.6 3E-14 6.4E-19 160.4 20.3 205 324-571 6-238 (535)
110 PRK14955 DNA polymerase III su 99.6 1E-14 2.2E-19 159.6 16.2 217 323-572 7-254 (397)
111 COG0466 Lon ATP-dependent Lon 99.6 1.3E-14 2.7E-19 163.8 16.9 224 332-577 323-586 (782)
112 PRK08727 hypothetical protein; 99.6 2.7E-14 5.9E-19 145.5 18.0 209 327-574 14-230 (233)
113 PRK06647 DNA polymerase III su 99.6 2.6E-14 5.5E-19 162.5 19.7 211 325-572 9-241 (563)
114 COG0593 DnaA ATPase involved i 99.6 5E-14 1.1E-18 153.2 20.9 244 325-597 80-333 (408)
115 PRK09111 DNA polymerase III su 99.6 3.8E-14 8.2E-19 162.0 20.5 214 323-573 15-255 (598)
116 PRK06305 DNA polymerase III su 99.6 5.3E-14 1.1E-18 156.4 20.4 212 324-572 9-243 (451)
117 KOG2004 Mitochondrial ATP-depe 99.6 1.3E-14 2.7E-19 163.0 14.8 165 332-517 411-597 (906)
118 PRK06620 hypothetical protein; 99.6 3.7E-14 8.1E-19 142.9 16.4 199 326-572 10-213 (214)
119 PRK00440 rfc replication facto 99.6 7E-14 1.5E-18 146.8 19.1 205 324-573 9-224 (319)
120 PRK10787 DNA-binding ATP-depen 99.6 2.2E-14 4.8E-19 168.6 16.9 219 332-573 322-580 (784)
121 COG1224 TIP49 DNA helicase TIP 99.6 9.4E-14 2E-18 146.2 19.4 98 473-574 322-431 (450)
122 KOG0989 Replication factor C, 99.6 1.4E-14 3E-19 150.2 12.9 195 322-553 26-236 (346)
123 PRK05342 clpX ATP-dependent pr 99.6 4.7E-14 1E-18 154.9 17.8 217 334-555 73-378 (412)
124 PRK07940 DNA polymerase III su 99.6 3.5E-14 7.5E-19 155.2 16.1 188 330-545 3-212 (394)
125 PRK14948 DNA polymerase III su 99.6 1.2E-13 2.6E-18 158.7 20.2 209 324-570 8-240 (620)
126 PRK14954 DNA polymerase III su 99.6 8.8E-14 1.9E-18 159.3 18.9 216 324-572 8-254 (620)
127 PF05673 DUF815: Protein of un 99.6 1.3E-13 2.8E-18 140.4 17.6 195 325-550 20-244 (249)
128 PRK14950 DNA polymerase III su 99.5 1.9E-13 4.1E-18 156.6 20.2 213 323-572 7-242 (585)
129 COG2812 DnaX DNA polymerase II 99.5 8.2E-14 1.8E-18 155.4 16.7 197 326-555 10-228 (515)
130 PRK13407 bchI magnesium chelat 99.5 3.3E-14 7.2E-19 152.1 13.0 218 327-577 3-308 (334)
131 TIGR02903 spore_lon_C ATP-depe 99.5 2.8E-13 6.2E-18 155.8 20.9 217 326-575 148-430 (615)
132 TIGR02640 gas_vesic_GvpN gas v 99.5 3.4E-13 7.5E-18 139.7 17.4 184 366-577 22-259 (262)
133 COG0542 clpA ATP-binding subun 99.5 7.4E-13 1.6E-17 153.0 20.2 282 326-640 164-494 (786)
134 TIGR00382 clpX endopeptidase C 99.5 3.3E-13 7.1E-18 147.9 16.3 219 333-555 78-384 (413)
135 CHL00081 chlI Mg-protoporyphyr 99.5 1.7E-13 3.6E-18 147.3 13.6 222 327-578 12-325 (350)
136 PRK09087 hypothetical protein; 99.5 2.6E-13 5.6E-18 138.0 14.0 173 366-575 45-222 (226)
137 PRK05201 hslU ATP-dependent pr 99.5 4.7E-13 1E-17 145.8 16.5 175 333-512 16-344 (443)
138 TIGR00390 hslU ATP-dependent p 99.5 4.3E-13 9.3E-18 146.0 15.8 175 333-512 13-342 (441)
139 PRK14971 DNA polymerase III su 99.5 1.1E-12 2.3E-17 150.8 19.5 210 326-572 11-243 (614)
140 TIGR02030 BchI-ChlI magnesium 99.5 4.3E-13 9.3E-18 143.8 15.2 217 330-578 2-312 (337)
141 COG1474 CDC6 Cdc6-related prot 99.5 3.1E-12 6.6E-17 138.7 21.7 220 331-576 16-266 (366)
142 PRK11034 clpA ATP-dependent Cl 99.5 9E-13 1.9E-17 154.3 18.5 165 333-517 459-667 (758)
143 TIGR02639 ClpA ATP-dependent C 99.5 1.4E-12 3.1E-17 153.0 18.0 200 332-553 454-709 (731)
144 TIGR02442 Cob-chelat-sub cobal 99.4 1.3E-12 2.8E-17 151.0 15.4 215 330-577 2-306 (633)
145 COG3829 RocR Transcriptional r 99.4 9.6E-13 2.1E-17 145.5 11.6 215 327-575 240-498 (560)
146 cd00009 AAA The AAA+ (ATPases 99.4 3.9E-12 8.5E-17 115.3 13.5 121 364-501 18-150 (151)
147 TIGR02329 propionate_PrpR prop 99.4 2.2E-12 4.7E-17 145.8 12.2 211 329-571 209-466 (526)
148 PRK15424 propionate catabolism 99.4 2.2E-12 4.7E-17 146.0 11.9 210 329-569 216-479 (538)
149 TIGR00368 Mg chelatase-related 99.4 2.1E-11 4.5E-16 137.1 18.3 212 328-573 188-497 (499)
150 TIGR01650 PD_CobS cobaltochela 99.3 8.1E-12 1.8E-16 132.8 13.5 137 365-516 64-233 (327)
151 PF06068 TIP49: TIP49 C-termin 99.3 1.9E-11 4E-16 130.8 15.8 67 330-403 22-90 (398)
152 KOG1942 DNA helicase, TBP-inte 99.3 4.7E-11 1E-15 123.3 17.6 100 472-575 326-438 (456)
153 TIGR01817 nifA Nif-specific re 99.3 2.9E-12 6.2E-17 145.4 9.7 210 326-570 190-440 (534)
154 PRK05022 anaerobic nitric oxid 99.3 1.2E-11 2.6E-16 139.7 14.1 208 330-569 185-437 (509)
155 PRK11608 pspF phage shock prot 99.3 1.3E-11 2.7E-16 132.1 13.5 194 330-555 4-240 (326)
156 PRK10820 DNA-binding transcrip 99.3 1.1E-11 2.3E-16 140.5 13.1 207 327-568 199-447 (520)
157 COG2607 Predicted ATPase (AAA+ 99.3 7.4E-11 1.6E-15 119.2 17.6 197 324-551 52-277 (287)
158 TIGR02974 phageshock_pspF psp 99.3 1.1E-11 2.3E-16 132.9 12.3 190 334-555 1-233 (329)
159 COG0714 MoxR-like ATPases [Gen 99.3 4.2E-11 9E-16 128.0 16.6 132 366-514 44-200 (329)
160 smart00350 MCM minichromosome 99.3 2.5E-11 5.4E-16 137.1 15.7 223 333-575 204-504 (509)
161 TIGR03345 VI_ClpV1 type VI sec 99.3 5.3E-11 1.2E-15 141.5 18.5 196 332-552 566-827 (852)
162 TIGR00764 lon_rel lon-related 99.3 4.4E-11 9.5E-16 137.6 17.2 105 470-577 267-393 (608)
163 PRK13531 regulatory ATPase Rav 99.3 9.3E-11 2E-15 130.1 19.0 214 333-578 21-286 (498)
164 PRK11388 DNA-binding transcrip 99.3 1.1E-11 2.3E-16 143.6 11.8 211 328-573 321-569 (638)
165 TIGR03346 chaperone_ClpB ATP-d 99.3 5.2E-11 1.1E-15 142.0 17.2 203 332-555 565-825 (852)
166 PRK09112 DNA polymerase III su 99.3 7.4E-11 1.6E-15 127.4 16.8 190 326-550 17-243 (351)
167 PF05621 TniB: Bacterial TniB 99.3 1.9E-10 4E-15 120.7 19.0 219 332-570 34-284 (302)
168 PRK10865 protein disaggregatio 99.3 9.5E-11 2.1E-15 139.7 18.5 166 331-518 567-781 (857)
169 CHL00095 clpC Clp protease ATP 99.3 1.1E-10 2.4E-15 138.9 18.6 166 332-518 509-734 (821)
170 COG1221 PspF Transcriptional r 99.3 1.7E-11 3.7E-16 133.3 10.2 199 327-556 73-310 (403)
171 PRK07471 DNA polymerase III su 99.2 2E-10 4.4E-15 124.6 17.9 187 326-549 13-240 (365)
172 TIGR03015 pepcterm_ATPase puta 99.2 1.7E-10 3.7E-15 118.6 16.0 192 366-575 44-266 (269)
173 COG3604 FhlA Transcriptional r 99.2 1.5E-11 3.3E-16 134.7 8.5 197 327-555 218-456 (550)
174 COG2204 AtoC Response regulato 99.2 3.8E-11 8.2E-16 132.7 11.3 206 329-569 138-385 (464)
175 smart00382 AAA ATPases associa 99.2 2.7E-11 5.8E-16 108.4 8.4 126 365-503 2-147 (148)
176 PHA02244 ATPase-like protein 99.2 3.4E-10 7.4E-15 122.0 18.2 148 329-505 94-263 (383)
177 PF01078 Mg_chelatase: Magnesi 99.2 9.4E-12 2E-16 124.3 5.7 142 330-505 1-204 (206)
178 PRK15429 formate hydrogenlyase 99.2 1.3E-10 2.7E-15 135.9 15.9 195 329-555 373-609 (686)
179 PRK09862 putative ATP-dependen 99.2 1.6E-10 3.6E-15 129.7 15.9 210 329-573 188-490 (506)
180 COG0542 clpA ATP-binding subun 99.2 1.1E-10 2.3E-15 135.4 14.0 161 332-518 491-707 (786)
181 PRK05564 DNA polymerase III su 99.2 1.9E-10 4.2E-15 122.0 14.8 170 329-538 1-182 (313)
182 COG0606 Predicted ATPase with 99.2 2.9E-11 6.3E-16 132.4 8.1 212 328-573 175-483 (490)
183 TIGR02031 BchD-ChlD magnesium 99.2 2E-10 4.4E-15 131.8 13.6 189 366-577 17-260 (589)
184 PRK07399 DNA polymerase III su 99.1 7.3E-10 1.6E-14 118.1 16.0 184 330-550 2-224 (314)
185 TIGR00602 rad24 checkpoint pro 99.1 4.9E-10 1.1E-14 128.8 15.5 259 323-606 75-389 (637)
186 TIGR00678 holB DNA polymerase 99.1 4.7E-10 1E-14 110.1 12.9 144 363-538 12-183 (188)
187 KOG1969 DNA replication checkp 99.1 2.5E-09 5.4E-14 121.4 19.2 206 324-558 263-518 (877)
188 PRK04132 replication factor C 99.1 7.2E-10 1.6E-14 130.6 15.6 170 368-570 567-749 (846)
189 TIGR02915 PEP_resp_reg putativ 99.1 2E-10 4.4E-15 126.9 10.0 205 330-569 137-383 (445)
190 PRK11331 5-methylcytosine-spec 99.1 8.8E-10 1.9E-14 121.6 14.8 155 331-502 174-357 (459)
191 COG1239 ChlI Mg-chelatase subu 99.1 1.9E-09 4.2E-14 116.8 16.5 253 328-638 13-327 (423)
192 PF07728 AAA_5: AAA domain (dy 99.1 1.4E-10 3E-15 107.9 6.4 113 367-494 1-139 (139)
193 COG0470 HolB ATPase involved i 99.1 2.2E-09 4.7E-14 112.9 15.6 144 333-508 2-173 (325)
194 PF00158 Sigma54_activat: Sigm 99.1 2.6E-10 5.7E-15 111.0 6.9 131 334-495 1-155 (168)
195 KOG2680 DNA helicase TIP49, TB 99.0 6.6E-09 1.4E-13 107.9 16.8 100 473-576 319-430 (454)
196 PRK08058 DNA polymerase III su 99.0 2E-09 4.4E-14 115.3 13.7 149 330-514 3-180 (329)
197 COG1219 ClpX ATP-dependent pro 99.0 8.6E-10 1.9E-14 115.3 9.1 125 334-466 63-203 (408)
198 PRK10923 glnG nitrogen regulat 99.0 2E-09 4.3E-14 119.9 12.8 208 330-572 136-385 (469)
199 PRK11361 acetoacetate metaboli 99.0 1.2E-09 2.6E-14 120.9 10.5 208 330-572 141-390 (457)
200 KOG0991 Replication factor C, 99.0 2.4E-09 5.2E-14 107.9 10.3 188 323-553 18-217 (333)
201 COG1220 HslU ATP-dependent pro 99.0 7.1E-09 1.5E-13 109.3 13.9 83 426-513 252-346 (444)
202 PTZ00111 DNA replication licen 99.0 6.7E-09 1.4E-13 122.3 15.2 157 333-511 451-652 (915)
203 smart00763 AAA_PrkA PrkA AAA d 99.0 1.1E-08 2.3E-13 110.3 15.5 83 331-420 49-144 (361)
204 PRK15115 response regulator Gl 99.0 2.4E-09 5.2E-14 118.3 10.4 205 333-572 135-381 (444)
205 PRK05707 DNA polymerase III su 98.9 5.9E-09 1.3E-13 111.8 12.8 154 362-544 19-200 (328)
206 KOG0741 AAA+-type ATPase [Post 98.9 5.2E-09 1.1E-13 115.2 12.0 155 347-514 526-684 (744)
207 PF07724 AAA_2: AAA domain (Cd 98.9 1.6E-09 3.6E-14 105.7 7.0 110 366-481 4-130 (171)
208 PRK08116 hypothetical protein; 98.9 8.1E-09 1.8E-13 107.7 11.9 124 364-505 113-251 (268)
209 TIGR01818 ntrC nitrogen regula 98.9 4.9E-09 1.1E-13 116.4 10.1 207 331-572 133-381 (463)
210 KOG1514 Origin recognition com 98.9 4.1E-08 8.8E-13 111.5 17.0 222 333-578 397-658 (767)
211 PRK13765 ATP-dependent proteas 98.9 1E-08 2.2E-13 118.3 12.4 101 471-574 277-399 (637)
212 PF14532 Sigma54_activ_2: Sigm 98.8 1.7E-09 3.8E-14 101.2 2.1 82 335-440 1-85 (138)
213 PF13177 DNA_pol3_delta2: DNA 98.8 1.5E-08 3.2E-13 98.0 8.4 133 336-502 1-160 (162)
214 PRK10365 transcriptional regul 98.8 1.4E-08 3E-13 111.9 9.3 205 333-572 140-386 (441)
215 PRK13406 bchD magnesium chelat 98.8 3.3E-08 7.2E-13 113.2 12.3 191 366-577 26-252 (584)
216 KOG0990 Replication factor C, 98.8 4.4E-08 9.6E-13 102.8 12.0 194 323-555 32-237 (360)
217 PRK07952 DNA replication prote 98.8 9.5E-08 2.1E-12 98.5 14.1 132 327-481 67-205 (244)
218 PRK06964 DNA polymerase III su 98.8 4.1E-08 8.9E-13 105.8 11.1 134 362-515 18-203 (342)
219 KOG2227 Pre-initiation complex 98.7 3E-07 6.4E-12 100.8 17.5 225 333-579 151-419 (529)
220 PF01637 Arch_ATPase: Archaeal 98.7 4.9E-08 1.1E-12 96.7 10.7 184 335-545 2-232 (234)
221 PF07726 AAA_3: ATPase family 98.7 3E-09 6.6E-14 98.9 1.9 109 367-494 1-129 (131)
222 PRK06871 DNA polymerase III su 98.7 1.5E-07 3.3E-12 100.7 14.9 135 362-516 21-179 (325)
223 PRK12377 putative replication 98.7 9.1E-08 2E-12 98.9 12.0 101 365-481 101-206 (248)
224 COG3283 TyrR Transcriptional r 98.7 1.3E-07 2.7E-12 100.6 12.2 198 327-556 199-433 (511)
225 PRK08939 primosomal protein Dn 98.7 1.4E-07 3.1E-12 100.3 12.4 132 329-481 124-261 (306)
226 KOG0745 Putative ATP-dependent 98.7 6.5E-08 1.4E-12 104.8 9.7 75 366-440 227-307 (564)
227 PRK07993 DNA polymerase III su 98.7 2.4E-07 5.1E-12 99.8 13.4 133 362-514 21-178 (334)
228 PF01434 Peptidase_M41: Peptid 98.6 3.2E-08 6.8E-13 100.0 5.7 60 564-627 1-60 (213)
229 PRK08769 DNA polymerase III su 98.6 3.4E-07 7.4E-12 97.9 13.3 133 362-514 23-183 (319)
230 PRK08181 transposase; Validate 98.6 3E-07 6.4E-12 96.2 12.1 71 365-437 106-180 (269)
231 PRK06526 transposase; Provisio 98.6 2.3E-07 4.9E-12 96.3 9.4 100 365-481 98-201 (254)
232 PF03215 Rad17: Rad17 cell cyc 98.6 1.5E-06 3.3E-11 98.5 16.6 209 324-556 11-269 (519)
233 PRK06835 DNA replication prote 98.5 6E-07 1.3E-11 96.4 12.4 69 366-436 184-258 (329)
234 PF13173 AAA_14: AAA domain 98.5 4.5E-07 9.7E-12 83.8 9.8 69 366-436 3-73 (128)
235 PRK06090 DNA polymerase III su 98.5 6.7E-07 1.5E-11 95.6 12.4 130 362-514 22-178 (319)
236 KOG2035 Replication factor C, 98.5 2.9E-06 6.3E-11 87.9 16.0 174 327-538 8-220 (351)
237 COG1484 DnaC DNA replication p 98.5 3.5E-07 7.6E-12 94.8 9.0 72 364-436 104-179 (254)
238 PRK09183 transposase/IS protei 98.5 2.7E-07 5.9E-12 95.9 7.6 71 365-436 102-176 (259)
239 PF13401 AAA_22: AAA domain; P 98.5 7E-07 1.5E-11 81.5 8.8 98 365-478 4-125 (131)
240 KOG1051 Chaperone HSP104 and r 98.4 1.2E-06 2.6E-11 103.4 12.7 126 333-480 563-710 (898)
241 PF01695 IstB_IS21: IstB-like 98.4 2.1E-07 4.5E-12 91.5 5.3 70 364-435 46-119 (178)
242 PRK06921 hypothetical protein; 98.4 2.3E-06 4.9E-11 89.4 13.2 69 364-435 116-188 (266)
243 PRK08699 DNA polymerase III su 98.4 1.2E-06 2.6E-11 94.0 10.7 132 362-514 18-183 (325)
244 COG3284 AcoR Transcriptional a 98.4 2.7E-07 5.9E-12 104.3 5.9 205 335-574 316-556 (606)
245 PF12775 AAA_7: P-loop contain 98.4 3.2E-06 7E-11 88.6 13.3 138 365-517 33-194 (272)
246 KOG0480 DNA replication licens 98.3 1.1E-06 2.5E-11 98.9 8.4 223 330-575 343-643 (764)
247 COG1241 MCM2 Predicted ATPase 98.3 1.4E-06 3E-11 100.7 9.1 222 332-576 286-593 (682)
248 PF00493 MCM: MCM2/3/5 family 98.3 1.2E-07 2.7E-12 101.8 0.1 221 333-575 25-326 (331)
249 PF05729 NACHT: NACHT domain 98.3 7.3E-06 1.6E-10 77.0 11.9 141 367-517 2-164 (166)
250 KOG0482 DNA replication licens 98.3 1.8E-06 3.9E-11 95.1 8.6 231 332-575 342-638 (721)
251 PF03969 AFG1_ATPase: AFG1-lik 98.3 4.3E-06 9.3E-11 91.0 10.8 103 362-481 59-168 (362)
252 KOG0478 DNA replication licens 98.3 7.6E-06 1.6E-10 93.1 13.0 200 363-574 460-723 (804)
253 cd01120 RecA-like_NTPases RecA 98.3 5.8E-06 1.3E-10 77.0 10.3 109 368-481 2-137 (165)
254 KOG1970 Checkpoint RAD17-RFC c 98.2 4.4E-05 9.5E-10 85.4 17.6 208 324-555 74-320 (634)
255 COG3267 ExeA Type II secretory 98.2 5E-05 1.1E-09 78.3 16.4 186 367-569 53-267 (269)
256 PLN03210 Resistant to P. syrin 98.1 3E-05 6.5E-10 96.1 15.8 158 327-518 179-366 (1153)
257 TIGR02237 recomb_radB DNA repa 98.1 1.2E-05 2.7E-10 79.9 9.1 115 361-479 8-148 (209)
258 PF00931 NB-ARC: NB-ARC domain 98.1 5.1E-05 1.1E-09 78.6 13.1 174 343-547 4-202 (287)
259 PRK05917 DNA polymerase III su 98.0 3E-05 6.6E-10 81.9 10.3 122 362-503 16-154 (290)
260 PF12774 AAA_6: Hydrolytic ATP 98.0 7.4E-05 1.6E-09 76.6 12.5 135 366-521 33-182 (231)
261 TIGR01618 phage_P_loop phage n 97.9 3.1E-05 6.8E-10 78.8 8.8 74 363-438 10-95 (220)
262 PF13191 AAA_16: AAA ATPase do 97.9 1.5E-05 3.3E-10 76.6 6.2 59 334-401 2-63 (185)
263 cd01124 KaiC KaiC is a circadi 97.9 0.00012 2.6E-09 71.0 11.5 71 368-438 2-109 (187)
264 TIGR02688 conserved hypothetic 97.9 0.00018 3.8E-09 79.4 13.4 77 339-438 194-274 (449)
265 COG1485 Predicted ATPase [Gene 97.8 7.7E-05 1.7E-09 80.0 10.1 127 337-481 30-171 (367)
266 PRK07132 DNA polymerase III su 97.8 0.00022 4.8E-09 75.8 13.4 127 363-514 16-160 (299)
267 PRK05818 DNA polymerase III su 97.8 0.00031 6.7E-09 73.1 14.0 121 363-503 5-147 (261)
268 PRK07276 DNA polymerase III su 97.8 0.00024 5.3E-09 75.2 13.2 155 362-548 21-198 (290)
269 KOG0481 DNA replication licens 97.8 0.00014 3E-09 80.8 11.5 229 333-574 332-638 (729)
270 KOG1968 Replication factor C, 97.8 2E-05 4.4E-10 93.8 5.1 205 327-554 315-535 (871)
271 KOG1051 Chaperone HSP104 and r 97.8 0.00017 3.7E-09 85.7 12.5 177 366-556 209-411 (898)
272 PRK00131 aroK shikimate kinase 97.8 9.3E-05 2E-09 70.6 8.5 43 363-407 2-44 (175)
273 PRK09361 radB DNA repair and r 97.8 0.00014 3E-09 73.4 10.0 39 361-399 19-60 (225)
274 PF00910 RNA_helicase: RNA hel 97.8 7.3E-05 1.6E-09 67.2 7.0 23 368-390 1-23 (107)
275 PRK11823 DNA repair protein Ra 97.7 0.00017 3.8E-09 80.7 11.2 79 361-439 76-171 (446)
276 TIGR02012 tigrfam_recA protein 97.7 0.00014 3.1E-09 77.9 10.0 119 361-479 51-190 (321)
277 cd01121 Sms Sms (bacterial rad 97.7 0.0002 4.4E-09 78.3 11.0 79 361-439 78-173 (372)
278 PRK06067 flagellar accessory p 97.6 0.00036 7.9E-09 70.9 11.1 39 361-399 21-62 (234)
279 PF13207 AAA_17: AAA domain; P 97.6 4E-05 8.7E-10 69.2 3.6 30 368-397 2-31 (121)
280 PRK13949 shikimate kinase; Pro 97.6 0.00049 1.1E-08 67.0 11.4 31 367-397 3-33 (169)
281 COG1373 Predicted ATPase (AAA+ 97.6 0.00078 1.7E-08 74.5 14.3 135 367-522 39-186 (398)
282 cd01394 radB RadB. The archaea 97.6 0.00046 1E-08 69.2 11.2 39 361-399 15-56 (218)
283 COG1618 Predicted nucleotide k 97.6 0.00032 6.8E-09 68.0 9.4 26 364-389 4-29 (179)
284 cd00983 recA RecA is a bacter 97.6 0.00024 5.2E-09 76.3 9.5 119 361-479 51-190 (325)
285 PRK08533 flagellar accessory p 97.6 0.00047 1E-08 70.5 10.8 77 361-437 20-130 (230)
286 PF06480 FtsH_ext: FtsH Extrac 97.6 2.1E-05 4.5E-10 69.5 0.8 30 179-208 26-55 (110)
287 PRK08118 topology modulation p 97.6 0.00011 2.4E-09 71.4 5.9 32 367-398 3-34 (167)
288 PHA00729 NTP-binding motif con 97.6 0.00011 2.4E-09 75.0 6.0 25 366-390 18-42 (226)
289 KOG0477 DNA replication licens 97.6 0.00035 7.6E-09 79.2 10.1 226 333-577 450-759 (854)
290 PF05707 Zot: Zonular occluden 97.5 0.00012 2.6E-09 72.7 5.6 123 368-503 3-146 (193)
291 COG4650 RtcR Sigma54-dependent 97.5 0.00033 7.1E-09 73.4 8.8 194 362-576 205-444 (531)
292 PF13671 AAA_33: AAA domain; P 97.5 0.00029 6.3E-09 65.2 7.7 37 368-406 2-38 (143)
293 TIGR02858 spore_III_AA stage I 97.5 0.0003 6.4E-09 73.8 8.5 113 366-501 112-256 (270)
294 cd00046 DEXDc DEAD-like helica 97.5 0.00071 1.5E-08 60.3 9.8 24 366-389 1-24 (144)
295 PRK00771 signal recognition pa 97.5 0.0012 2.5E-08 73.9 13.5 194 363-575 93-332 (437)
296 PRK06762 hypothetical protein; 97.5 0.00043 9.2E-09 66.4 8.6 40 365-404 2-41 (166)
297 PRK07261 topology modulation p 97.5 0.00018 3.9E-09 70.1 5.8 31 368-398 3-33 (171)
298 PF14516 AAA_35: AAA-like doma 97.4 0.007 1.5E-07 65.2 18.1 165 365-540 31-233 (331)
299 PRK14532 adenylate kinase; Pro 97.4 0.00064 1.4E-08 66.6 9.1 36 367-404 2-37 (188)
300 PRK15455 PrkA family serine pr 97.4 0.00016 3.5E-09 82.4 5.4 63 330-398 74-137 (644)
301 PRK12723 flagellar biosynthesi 97.4 0.0011 2.4E-08 73.0 11.7 165 363-543 172-374 (388)
302 PRK14722 flhF flagellar biosyn 97.4 0.00034 7.3E-09 76.6 7.6 111 363-489 135-267 (374)
303 cd01128 rho_factor Transcripti 97.4 0.0016 3.6E-08 67.5 12.0 76 365-440 16-119 (249)
304 PF07693 KAP_NTPase: KAP famil 97.4 0.0038 8.2E-08 66.0 14.9 78 424-518 172-265 (325)
305 COG5271 MDN1 AAA ATPase contai 97.4 0.00064 1.4E-08 83.4 9.6 137 365-517 1543-1704(4600)
306 KOG2228 Origin recognition com 97.4 0.00081 1.8E-08 71.9 9.5 160 333-516 25-219 (408)
307 cd03283 ABC_MutS-like MutS-lik 97.4 0.00077 1.7E-08 67.5 9.0 67 366-433 26-114 (199)
308 PRK10536 hypothetical protein; 97.4 0.001 2.2E-08 69.2 10.1 45 330-388 53-97 (262)
309 cd01393 recA_like RecA is a b 97.4 0.00055 1.2E-08 68.8 7.9 116 361-478 15-166 (226)
310 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.00076 1.6E-08 68.1 8.7 116 361-478 15-167 (235)
311 COG0703 AroK Shikimate kinase 97.3 0.00058 1.2E-08 67.0 7.3 40 366-407 3-42 (172)
312 PRK09376 rho transcription ter 97.3 0.00089 1.9E-08 73.5 9.5 73 368-440 172-272 (416)
313 KOG2383 Predicted ATPase [Gene 97.3 0.0016 3.4E-08 71.1 11.0 28 362-389 111-138 (467)
314 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.0024 5.1E-08 65.4 12.0 39 361-399 17-58 (237)
315 PF13604 AAA_30: AAA domain; P 97.3 0.0012 2.5E-08 65.9 9.4 98 366-480 19-132 (196)
316 PF06745 KaiC: KaiC; InterPro 97.3 0.0013 2.9E-08 66.3 10.0 97 361-464 15-148 (226)
317 cd00464 SK Shikimate kinase (S 97.3 0.00044 9.6E-09 64.8 6.0 39 367-407 1-39 (154)
318 PRK04296 thymidine kinase; Pro 97.3 0.0009 2E-08 66.3 8.4 70 367-436 4-90 (190)
319 TIGR00416 sms DNA repair prote 97.3 0.0015 3.2E-08 73.4 11.0 78 361-438 90-184 (454)
320 KOG2170 ATPase of the AAA+ sup 97.3 0.0066 1.4E-07 64.2 14.8 96 333-437 83-191 (344)
321 PTZ00202 tuzin; Provisional 97.3 0.017 3.6E-07 64.5 18.6 62 329-399 259-320 (550)
322 PF00437 T2SE: Type II/IV secr 97.3 0.00025 5.3E-09 73.6 4.2 99 326-434 98-207 (270)
323 KOG2543 Origin recognition com 97.3 0.0038 8.3E-08 67.8 13.2 159 333-515 7-192 (438)
324 PRK13947 shikimate kinase; Pro 97.2 0.00028 6.1E-09 67.7 4.2 31 367-397 3-33 (171)
325 PF06309 Torsin: Torsin; Inte 97.2 0.0012 2.6E-08 61.7 8.1 52 332-389 25-77 (127)
326 PRK12339 2-phosphoglycerate ki 97.2 0.0059 1.3E-07 61.2 13.6 30 365-394 3-32 (197)
327 cd01131 PilT Pilus retraction 97.2 0.00047 1E-08 68.7 5.5 67 367-433 3-83 (198)
328 PRK05973 replicative DNA helic 97.2 0.0024 5.3E-08 65.8 10.7 39 361-399 60-101 (237)
329 PRK13948 shikimate kinase; Pro 97.2 0.00079 1.7E-08 66.7 6.8 44 363-408 8-51 (182)
330 PRK03839 putative kinase; Prov 97.2 0.00031 6.7E-09 68.4 3.8 31 367-397 2-32 (180)
331 PRK13946 shikimate kinase; Pro 97.2 0.001 2.2E-08 65.4 7.4 35 364-398 9-43 (184)
332 PRK09354 recA recombinase A; P 97.2 0.0015 3.3E-08 70.8 9.3 78 361-438 56-152 (349)
333 PRK14974 cell division protein 97.2 0.002 4.3E-08 69.8 10.0 73 364-436 139-234 (336)
334 TIGR03574 selen_PSTK L-seryl-t 97.2 0.002 4.4E-08 66.2 9.7 36 368-403 2-40 (249)
335 cd01122 GP4d_helicase GP4d_hel 97.2 0.0019 4.2E-08 66.8 9.7 38 361-398 26-67 (271)
336 TIGR01420 pilT_fam pilus retra 97.1 0.00096 2.1E-08 72.2 7.6 70 365-434 122-205 (343)
337 PRK04841 transcriptional regul 97.1 0.0048 1E-07 74.2 14.2 151 366-540 33-219 (903)
338 cd00227 CPT Chloramphenicol (C 97.1 0.00043 9.3E-09 67.3 4.3 39 366-404 3-41 (175)
339 PLN02674 adenylate kinase 97.1 0.0026 5.5E-08 65.9 10.1 41 363-405 29-69 (244)
340 PRK00625 shikimate kinase; Pro 97.1 0.00042 9.1E-09 68.0 4.1 31 367-397 2-32 (173)
341 PRK05800 cobU adenosylcobinami 97.1 0.0031 6.8E-08 61.7 10.2 95 367-465 3-114 (170)
342 cd01130 VirB11-like_ATPase Typ 97.1 0.00056 1.2E-08 67.4 4.9 70 364-433 24-109 (186)
343 PRK08154 anaerobic benzoate ca 97.1 0.0017 3.8E-08 69.2 8.9 35 362-396 130-164 (309)
344 COG1116 TauB ABC-type nitrate/ 97.1 0.0011 2.4E-08 68.3 7.0 23 366-388 30-52 (248)
345 KOG3347 Predicted nucleotide k 97.1 0.0012 2.5E-08 63.3 6.5 33 365-397 7-39 (176)
346 COG3854 SpoIIIAA ncharacterize 97.1 0.0035 7.6E-08 64.2 10.0 69 367-435 139-229 (308)
347 TIGR02782 TrbB_P P-type conjug 97.1 0.00046 1E-08 73.4 4.0 70 365-434 132-214 (299)
348 PF05272 VirE: Virulence-assoc 97.1 0.004 8.7E-08 62.5 10.5 125 341-502 34-169 (198)
349 cd03216 ABC_Carb_Monos_I This 97.1 0.0014 3E-08 63.2 6.9 105 362-481 23-142 (163)
350 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.00052 1.1E-08 66.6 3.9 35 368-404 2-36 (183)
351 PF00448 SRP54: SRP54-type pro 97.0 0.0018 3.8E-08 64.9 7.4 131 365-509 1-156 (196)
352 PF10236 DAP3: Mitochondrial r 97.0 0.039 8.5E-07 59.0 18.2 122 424-546 156-308 (309)
353 PRK14531 adenylate kinase; Pro 97.0 0.00068 1.5E-08 66.5 4.4 36 366-403 3-38 (183)
354 COG4178 ABC-type uncharacteriz 97.0 0.0015 3.3E-08 75.0 7.7 28 361-388 415-442 (604)
355 TIGR03880 KaiC_arch_3 KaiC dom 97.0 0.0076 1.6E-07 60.8 12.0 39 361-399 12-53 (224)
356 PRK04040 adenylate kinase; Pro 97.0 0.0053 1.2E-07 60.9 10.6 31 365-395 2-34 (188)
357 cd02020 CMPK Cytidine monophos 97.0 0.00065 1.4E-08 63.0 3.8 30 368-397 2-31 (147)
358 PRK06217 hypothetical protein; 97.0 0.00069 1.5E-08 66.4 4.1 31 367-397 3-33 (183)
359 cd03281 ABC_MSH5_euk MutS5 hom 97.0 0.0041 8.9E-08 62.9 9.7 23 365-387 29-51 (213)
360 PLN02200 adenylate kinase fami 97.0 0.00086 1.9E-08 68.9 4.9 42 361-404 39-80 (234)
361 cd00984 DnaB_C DnaB helicase C 97.0 0.0028 6.1E-08 64.3 8.6 38 361-398 9-50 (242)
362 PRK10867 signal recognition pa 96.9 0.013 2.7E-07 65.6 13.9 75 362-436 97-195 (433)
363 PF03266 NTPase_1: NTPase; In 96.9 0.001 2.2E-08 65.0 4.7 23 367-389 1-23 (168)
364 cd01428 ADK Adenylate kinase ( 96.9 0.00077 1.7E-08 65.8 3.9 35 368-404 2-36 (194)
365 cd02021 GntK Gluconate kinase 96.9 0.00081 1.7E-08 63.3 3.8 32 368-401 2-33 (150)
366 PRK13900 type IV secretion sys 96.9 0.0018 4E-08 69.9 7.0 71 364-434 159-245 (332)
367 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0023 5E-08 66.9 7.5 93 329-434 57-159 (264)
368 TIGR03881 KaiC_arch_4 KaiC dom 96.9 0.0086 1.9E-07 60.5 11.5 38 361-398 16-56 (229)
369 PRK09519 recA DNA recombinatio 96.9 0.0033 7.2E-08 74.5 9.5 118 361-478 56-194 (790)
370 COG0563 Adk Adenylate kinase a 96.9 0.0016 3.5E-08 64.2 5.9 35 367-403 2-36 (178)
371 PHA02624 large T antigen; Prov 96.9 0.0025 5.5E-08 73.1 8.1 206 361-625 427-645 (647)
372 PRK11889 flhF flagellar biosyn 96.9 0.0067 1.4E-07 66.9 11.0 72 364-435 240-331 (436)
373 cd02027 APSK Adenosine 5'-phos 96.9 0.0037 8E-08 59.5 8.0 36 368-403 2-40 (149)
374 PRK14530 adenylate kinase; Pro 96.9 0.001 2.2E-08 67.0 4.4 36 367-404 5-40 (215)
375 PTZ00088 adenylate kinase 1; P 96.9 0.0011 2.4E-08 67.9 4.7 38 364-403 5-42 (229)
376 TIGR01313 therm_gnt_kin carboh 96.9 0.00087 1.9E-08 64.0 3.7 32 368-401 1-32 (163)
377 PHA02530 pseT polynucleotide k 96.9 0.003 6.5E-08 66.3 8.0 40 365-405 2-41 (300)
378 PRK06547 hypothetical protein; 96.9 0.0011 2.5E-08 64.9 4.5 35 363-397 13-47 (172)
379 PRK06696 uridine kinase; Valid 96.8 0.0017 3.6E-08 65.8 5.8 40 363-402 20-62 (223)
380 TIGR03878 thermo_KaiC_2 KaiC d 96.8 0.0082 1.8E-07 62.5 11.0 38 361-398 32-72 (259)
381 PF04665 Pox_A32: Poxvirus A32 96.8 0.016 3.6E-07 59.9 12.9 133 363-515 11-169 (241)
382 cd00544 CobU Adenosylcobinamid 96.8 0.0076 1.7E-07 59.0 10.1 95 368-464 2-113 (169)
383 TIGR02655 circ_KaiC circadian 96.8 0.0083 1.8E-07 68.0 11.8 78 361-438 259-367 (484)
384 PRK04328 hypothetical protein; 96.8 0.012 2.6E-07 60.8 12.0 38 361-398 19-59 (249)
385 PF13479 AAA_24: AAA domain 96.8 0.0036 7.7E-08 63.2 7.9 68 365-436 3-80 (213)
386 PRK13764 ATPase; Provisional 96.8 0.0017 3.6E-08 75.1 6.1 69 365-434 257-334 (602)
387 TIGR02788 VirB11 P-type DNA tr 96.8 0.0016 3.5E-08 69.4 5.6 74 361-434 140-228 (308)
388 PRK13851 type IV secretion sys 96.8 0.0014 3E-08 71.1 5.0 72 363-434 160-246 (344)
389 PRK05057 aroK shikimate kinase 96.8 0.0013 2.8E-08 64.2 4.4 34 365-398 4-37 (172)
390 TIGR02236 recomb_radA DNA repa 96.8 0.0061 1.3E-07 64.8 9.8 116 361-478 91-244 (310)
391 PRK00279 adk adenylate kinase; 96.8 0.0029 6.3E-08 63.6 7.0 29 368-396 3-31 (215)
392 PRK03731 aroL shikimate kinase 96.8 0.0013 2.8E-08 63.3 4.3 38 366-405 3-40 (171)
393 COG4088 Predicted nucleotide k 96.8 0.0027 5.9E-08 63.9 6.4 22 368-389 4-25 (261)
394 cd03238 ABC_UvrA The excision 96.8 0.012 2.6E-07 57.9 11.0 118 363-502 19-163 (176)
395 PRK04301 radA DNA repair and r 96.8 0.005 1.1E-07 65.9 8.8 117 361-479 98-251 (317)
396 PRK12724 flagellar biosynthesi 96.8 0.014 3.1E-07 64.9 12.4 36 364-399 222-261 (432)
397 TIGR02238 recomb_DMC1 meiotic 96.8 0.0053 1.1E-07 65.8 8.9 116 361-478 92-243 (313)
398 TIGR02525 plasmid_TraJ plasmid 96.7 0.0028 6.2E-08 69.4 7.0 68 367-434 151-235 (372)
399 cd02022 DPCK Dephospho-coenzym 96.7 0.0088 1.9E-07 58.5 9.6 36 368-406 2-37 (179)
400 PRK13833 conjugal transfer pro 96.7 0.002 4.2E-08 69.4 5.4 69 365-433 144-224 (323)
401 PF09848 DUF2075: Uncharacteri 96.7 0.0049 1.1E-07 66.8 8.6 23 367-389 3-25 (352)
402 PRK14730 coaE dephospho-CoA ki 96.7 0.011 2.4E-07 59.0 10.3 38 367-406 3-40 (195)
403 PF13521 AAA_28: AAA domain; P 96.7 0.0027 5.8E-08 60.8 5.8 35 368-403 2-36 (163)
404 PRK13894 conjugal transfer ATP 96.7 0.0017 3.7E-08 69.7 4.9 70 365-434 148-229 (319)
405 PRK13808 adenylate kinase; Pro 96.7 0.0089 1.9E-07 64.6 10.2 34 368-403 3-36 (333)
406 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.0099 2.2E-07 56.2 9.5 71 362-434 23-98 (144)
407 smart00487 DEXDc DEAD-like hel 96.7 0.017 3.7E-07 54.7 11.1 24 366-389 25-49 (201)
408 PF06414 Zeta_toxin: Zeta toxi 96.7 0.0048 1E-07 61.3 7.6 42 363-404 13-55 (199)
409 KOG0479 DNA replication licens 96.7 0.016 3.5E-07 65.8 12.1 157 333-500 302-481 (818)
410 PRK13695 putative NTPase; Prov 96.7 0.012 2.7E-07 56.9 10.1 23 367-389 2-24 (174)
411 TIGR01526 nadR_NMN_Atrans nico 96.7 0.0047 1E-07 66.5 7.8 70 366-436 163-243 (325)
412 PRK10416 signal recognition pa 96.6 0.013 2.8E-07 63.0 11.0 36 363-398 112-150 (318)
413 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0017 3.7E-08 62.9 4.0 34 367-402 5-38 (188)
414 PRK14528 adenylate kinase; Pro 96.6 0.0018 3.8E-08 64.0 4.1 30 367-396 3-32 (186)
415 PLN03187 meiotic recombination 96.6 0.0057 1.2E-07 66.4 8.1 116 361-478 122-273 (344)
416 PRK14527 adenylate kinase; Pro 96.6 0.0017 3.8E-08 64.0 3.8 34 363-396 4-37 (191)
417 PRK05541 adenylylsulfate kinas 96.6 0.0065 1.4E-07 58.9 7.7 41 363-403 5-48 (176)
418 PRK05703 flhF flagellar biosyn 96.6 0.013 2.8E-07 65.5 11.0 36 365-400 221-261 (424)
419 cd03246 ABCC_Protease_Secretio 96.6 0.0081 1.8E-07 58.3 8.3 26 364-389 27-52 (173)
420 PRK02496 adk adenylate kinase; 96.6 0.0018 3.9E-08 63.3 3.7 30 367-396 3-32 (184)
421 PF00406 ADK: Adenylate kinase 96.6 0.0046 9.9E-08 58.5 6.4 35 370-406 1-35 (151)
422 cd03243 ABC_MutS_homologs The 96.6 0.0064 1.4E-07 60.6 7.7 22 366-387 30-51 (202)
423 TIGR01351 adk adenylate kinase 96.6 0.0019 4.1E-08 64.7 3.9 34 368-403 2-35 (210)
424 cd03223 ABCD_peroxisomal_ALDP 96.6 0.011 2.3E-07 57.2 9.0 28 362-389 24-51 (166)
425 TIGR03499 FlhF flagellar biosy 96.6 0.0064 1.4E-07 64.1 8.0 37 364-400 193-234 (282)
426 COG1102 Cmk Cytidylate kinase 96.6 0.0018 3.9E-08 62.8 3.4 28 368-395 3-30 (179)
427 cd00267 ABC_ATPase ABC (ATP-bi 96.6 0.0063 1.4E-07 57.9 7.2 73 363-435 23-109 (157)
428 PRK09302 circadian clock prote 96.6 0.027 5.9E-07 64.1 13.5 39 361-399 27-69 (509)
429 COG4619 ABC-type uncharacteriz 96.6 0.012 2.7E-07 57.7 9.0 26 363-388 27-52 (223)
430 TIGR00152 dephospho-CoA kinase 96.6 0.017 3.6E-07 56.8 10.3 41 368-410 2-42 (188)
431 KOG0732 AAA+-type ATPase conta 96.5 0.0069 1.5E-07 73.1 8.8 75 367-441 594-670 (1080)
432 smart00534 MUTSac ATPase domai 96.5 0.014 3E-07 57.5 9.6 20 368-387 2-21 (185)
433 cd03280 ABC_MutS2 MutS2 homolo 96.5 0.012 2.5E-07 58.6 9.1 21 366-386 29-49 (200)
434 COG1936 Predicted nucleotide k 96.5 0.0038 8.2E-08 61.2 5.4 34 367-403 2-35 (180)
435 COG2805 PilT Tfp pilus assembl 96.5 0.0065 1.4E-07 64.3 7.5 69 368-436 128-210 (353)
436 PTZ00035 Rad51 protein; Provis 96.5 0.013 2.8E-07 63.5 9.9 115 361-477 114-264 (337)
437 PRK08099 bifunctional DNA-bind 96.5 0.007 1.5E-07 67.0 8.0 40 364-403 218-257 (399)
438 cd03228 ABCC_MRP_Like The MRP 96.5 0.0096 2.1E-07 57.6 8.1 28 362-389 25-52 (171)
439 TIGR02655 circ_KaiC circadian 96.5 0.022 4.7E-07 64.7 12.1 39 361-399 17-59 (484)
440 TIGR02533 type_II_gspE general 96.5 0.0066 1.4E-07 68.9 7.9 95 327-435 217-322 (486)
441 cd03247 ABCC_cytochrome_bd The 96.5 0.03 6.6E-07 54.4 11.6 28 362-389 25-52 (178)
442 cd03115 SRP The signal recogni 96.5 0.011 2.4E-07 57.1 8.4 32 368-399 3-37 (173)
443 PLN03186 DNA repair protein RA 96.5 0.0099 2.2E-07 64.5 8.7 117 361-479 119-271 (342)
444 PRK14529 adenylate kinase; Pro 96.5 0.0096 2.1E-07 60.9 8.1 35 367-403 2-36 (223)
445 COG5245 DYN1 Dynein, heavy cha 96.5 0.026 5.6E-07 69.7 12.6 178 362-556 1491-1717(3164)
446 PF01745 IPT: Isopentenyl tran 96.5 0.0037 7.9E-08 63.4 4.9 133 367-517 3-140 (233)
447 PF13238 AAA_18: AAA domain; P 96.4 0.0022 4.9E-08 57.7 3.0 22 368-389 1-22 (129)
448 TIGR00064 ftsY signal recognit 96.4 0.038 8.3E-07 58.1 12.6 38 362-399 69-109 (272)
449 PRK14700 recombination factor 96.4 0.029 6.3E-07 59.6 11.4 141 469-618 6-160 (300)
450 TIGR02239 recomb_RAD51 DNA rep 96.4 0.0074 1.6E-07 64.8 7.1 116 361-478 92-243 (316)
451 cd01125 repA Hexameric Replica 96.4 0.015 3.3E-07 59.4 9.1 21 368-388 4-24 (239)
452 PRK01184 hypothetical protein; 96.4 0.0031 6.8E-08 61.5 3.8 29 367-396 3-31 (184)
453 PHA02774 E1; Provisional 96.3 0.0052 1.1E-07 70.4 5.9 34 365-398 434-468 (613)
454 PRK04182 cytidylate kinase; Pr 96.3 0.0034 7.4E-08 60.3 3.9 29 367-395 2-30 (180)
455 PF13481 AAA_25: AAA domain; P 96.3 0.008 1.7E-07 58.7 6.5 73 367-439 34-156 (193)
456 PRK12338 hypothetical protein; 96.3 0.08 1.7E-06 57.0 14.5 31 364-394 3-33 (319)
457 cd03222 ABC_RNaseL_inhibitor T 96.3 0.012 2.5E-07 58.1 7.6 71 364-434 24-99 (177)
458 PLN02199 shikimate kinase 96.3 0.014 3E-07 62.1 8.5 38 365-404 102-139 (303)
459 TIGR01425 SRP54_euk signal rec 96.3 0.029 6.2E-07 62.7 11.4 196 363-575 98-339 (429)
460 TIGR02173 cyt_kin_arch cytidyl 96.3 0.0037 8.1E-08 59.6 3.8 29 368-396 3-31 (171)
461 TIGR00767 rho transcription te 96.3 0.01 2.2E-07 65.6 7.6 26 365-390 168-193 (415)
462 PRK00889 adenylylsulfate kinas 96.3 0.016 3.5E-07 56.1 8.3 40 364-403 3-45 (175)
463 cd03230 ABC_DR_subfamily_A Thi 96.2 0.017 3.7E-07 56.0 8.1 27 363-389 24-50 (173)
464 KOG0058 Peptide exporter, ABC 96.2 0.019 4E-07 66.9 9.5 27 361-387 490-516 (716)
465 PF08423 Rad51: Rad51; InterP 96.2 0.0081 1.8E-07 62.6 6.1 116 368-485 41-192 (256)
466 cd03227 ABC_Class2 ABC-type Cl 96.2 0.018 3.8E-07 55.5 8.1 23 365-387 21-43 (162)
467 PRK10263 DNA translocase FtsK; 96.2 0.03 6.5E-07 69.1 11.5 74 427-514 1143-1218(1355)
468 PRK00081 coaE dephospho-CoA ki 96.2 0.034 7.4E-07 55.2 10.2 38 366-406 3-40 (194)
469 COG5271 MDN1 AAA ATPase contai 96.2 0.014 2.9E-07 72.6 8.3 135 366-516 889-1047(4600)
470 TIGR00150 HI0065_YjeE ATPase, 96.2 0.0075 1.6E-07 56.9 5.1 29 364-392 21-49 (133)
471 PF13245 AAA_19: Part of AAA d 96.2 0.0069 1.5E-07 51.5 4.5 31 368-398 13-50 (76)
472 PRK08233 hypothetical protein; 96.2 0.0052 1.1E-07 59.2 4.2 33 366-398 4-37 (182)
473 cd03215 ABC_Carb_Monos_II This 96.2 0.019 4.1E-07 56.1 8.2 27 363-389 24-50 (182)
474 cd03213 ABCG_EPDR ABCG transpo 96.2 0.036 7.8E-07 54.9 10.3 27 363-389 33-59 (194)
475 PRK09302 circadian clock prote 96.1 0.027 5.9E-07 64.1 10.4 78 361-438 269-377 (509)
476 TIGR01448 recD_rel helicase, p 96.1 0.017 3.7E-07 68.6 9.1 97 367-481 340-455 (720)
477 TIGR01069 mutS2 MutS2 family p 96.1 0.049 1.1E-06 65.2 12.8 23 366-388 323-345 (771)
478 PF08433 KTI12: Chromatin asso 96.1 0.017 3.6E-07 60.8 7.9 70 368-437 4-83 (270)
479 PF08298 AAA_PrkA: PrkA AAA do 96.1 0.013 2.8E-07 63.5 7.2 82 331-418 59-142 (358)
480 PRK14526 adenylate kinase; Pro 96.1 0.0052 1.1E-07 62.2 3.9 35 367-403 2-36 (211)
481 COG2274 SunT ABC-type bacterio 96.1 0.011 2.5E-07 69.7 7.3 26 363-388 495-522 (709)
482 PRK12337 2-phosphoglycerate ki 96.1 0.12 2.5E-06 58.3 14.6 31 363-393 253-283 (475)
483 PF02562 PhoH: PhoH-like prote 96.1 0.0085 1.8E-07 60.5 5.3 23 367-389 21-43 (205)
484 cd02019 NK Nucleoside/nucleoti 96.1 0.0062 1.4E-07 50.4 3.6 22 368-389 2-23 (69)
485 cd03232 ABC_PDR_domain2 The pl 96.1 0.04 8.6E-07 54.4 10.0 26 363-388 31-56 (192)
486 COG1066 Sms Predicted ATP-depe 96.1 0.04 8.6E-07 60.7 10.6 78 363-440 91-184 (456)
487 TIGR02524 dot_icm_DotB Dot/Icm 96.1 0.011 2.3E-07 64.7 6.3 69 366-434 135-222 (358)
488 PRK10436 hypothetical protein; 96.0 0.016 3.4E-07 65.4 7.7 94 328-434 194-297 (462)
489 PRK10078 ribose 1,5-bisphospho 96.0 0.0065 1.4E-07 59.7 4.1 29 366-394 3-31 (186)
490 cd03214 ABC_Iron-Siderophores_ 96.0 0.032 7E-07 54.4 8.9 27 363-389 23-49 (180)
491 TIGR03819 heli_sec_ATPase heli 96.0 0.0077 1.7E-07 65.3 4.8 70 365-434 178-263 (340)
492 PRK06581 DNA polymerase III su 96.0 0.15 3.4E-06 52.8 13.9 149 363-535 13-176 (263)
493 PF13086 AAA_11: AAA domain; P 96.0 0.0049 1.1E-07 60.9 3.0 22 368-389 20-41 (236)
494 COG2874 FlaH Predicted ATPases 96.0 0.055 1.2E-06 55.0 10.4 125 353-490 14-176 (235)
495 PRK12608 transcription termina 95.9 0.021 4.6E-07 62.6 7.9 23 367-389 135-157 (380)
496 COG1121 ZnuC ABC-type Mn/Zn tr 95.9 0.037 8E-07 57.6 9.2 24 365-388 30-53 (254)
497 TIGR02538 type_IV_pilB type IV 95.9 0.018 3.9E-07 66.6 7.5 95 328-435 292-396 (564)
498 PF07931 CPT: Chloramphenicol 95.9 0.011 2.5E-07 58.1 5.1 40 366-405 2-41 (174)
499 COG2804 PulE Type II secretory 95.9 0.017 3.8E-07 64.9 7.1 96 327-436 233-339 (500)
500 PRK14021 bifunctional shikimat 95.9 0.019 4.2E-07 66.0 7.7 32 366-397 7-38 (542)
No 1
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-74 Score=637.36 Aligned_cols=414 Identities=51% Similarity=0.712 Sum_probs=345.8
Q ss_pred ceechHHHHHHHHcCCccEEEEeCc--EEEEEEecCCcccchhhhhhhchhhhhhhhccCCcceeEEEecCCCCCcchHH
Q 006534 181 VSVPYSDFLSKINSNQVAKVEVDGV--HIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPYE 258 (641)
Q Consensus 181 ~~~~ys~f~~~~~~~~v~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~ 258 (641)
..++|++|+..+..++|++|.+++. .+..+.+++. ...+|.+....|.. ...
T Consensus 23 ~~~~~~~f~~~~~~~~v~~~~~~~~~~~v~~~~~~~~-------------------------~~~~~~~~~~~~~~-~~~ 76 (596)
T COG0465 23 KQVTYSQFIQLVSGGKVSSVSIKGDSKTVNLKLKDGS-------------------------KNTVYLPKGVNDPN-LVS 76 (596)
T ss_pred ccccHHHHHHHHhcCCceEEEEcCCceEEEEEecCCc-------------------------ceEEeecCCcccHH-HHH
Confidence 3589999999999999999999875 4555555441 11233333333433 345
Q ss_pred HHHhCCceeccCCCCCcchHHHHHHHHHHHHHHHHHHhhcccccccccCccccccCCCCCCCccccCCCccccccccCCh
Q 006534 259 KMLENQVEFGSPDKRSGGFLNSALIALFYVAVLAGLLHRFPVSFSQTAGQVGHRKTRGPGGAKVSEQGDTITFADVAGVD 338 (641)
Q Consensus 259 ~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~DV~G~~ 338 (641)
.+..+++.+....+...+++..++.+++++.++.++++.+.....+..+......++++......+....++|.|++|.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~il~~~~~~~~~~r~~~~g~g~~~~~~gkskak~~~~~~~~v~F~DVAG~d 156 (596)
T COG0465 77 FLDSNNITESGFIPEDNSLLASLLSTWLPFILLIGLGWFFFRRQAQGGGGGGAFSFGKSKAKLYLEDQVKVTFADVAGVD 156 (596)
T ss_pred HHHhcCCcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCChHHHHHhcccccCcChhhhcCcH
Confidence 56667765443332333454554545554444443222111111111111112223333333344556889999999999
Q ss_pred HHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHH
Q 006534 339 EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFA 418 (641)
Q Consensus 339 e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~vG~~~~~vr~lF~ 418 (641)
|+|++|.|+|++|++|.+|..+|++.|+|+||+||||||||+||||+|+|+++||+++++++|+++|+|.+++++|++|.
T Consensus 157 Eakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~ 236 (596)
T COG0465 157 EAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFE 236 (596)
T ss_pred HHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEE
Q 006534 419 RAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVV 498 (641)
Q Consensus 419 ~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I 498 (641)
+|++++||||||||||+++++|+.+ .++++++++|++||||.+||+|..+.+|+||++|||||.||+||+||||||++|
T Consensus 237 qAkk~aP~IIFIDEiDAvGr~Rg~g-~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI 315 (596)
T COG0465 237 QAKKNAPCIIFIDEIDAVGRQRGAG-LGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQI 315 (596)
T ss_pred HhhccCCCeEEEehhhhcccccCCC-CCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceee
Confidence 9999999999999999999999766 567899999999999999999999999999999999999999999999999999
Q ss_pred EecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcc
Q 006534 499 MVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAG 578 (641)
Q Consensus 499 ~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~rvi~g 578 (641)
.++.||..+|++|++.|++++ ++++++++..+|+.|+||+|+||.|++|+|++.|.++++..|++.||++|++++++|
T Consensus 316 ~V~~PDi~gRe~IlkvH~~~~--~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G 393 (596)
T COG0465 316 LVELPDIKGREQILKVHAKNK--PLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAG 393 (596)
T ss_pred ecCCcchhhHHHHHHHHhhcC--CCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcC
Confidence 999999999999999999764 777999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCChhHHHHHHHHHHHHHHHHhHHhhcCCCCCceeeEeeeecc
Q 006534 579 IEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRDSK 627 (641)
Q Consensus 579 ~~~~~~~ls~~ek~~va~hEaghAlv~~~l~~~~~~~~~v~kiti~~~~ 627 (641)
.++++..+++.+++.+||||+|||+++. ++|++||||||||+|-.
T Consensus 394 ~erks~vise~ek~~~AYhEaghalv~~----~l~~~d~v~KvtIiPrG 438 (596)
T COG0465 394 PERKSRVISEAEKKITAYHEAGHALVGL----LLPDADPVHKVTIIPRG 438 (596)
T ss_pred cCcCCcccChhhhcchHHHHHHHHHHHH----hCCCCcccceeeeccCc
Confidence 9999999999999999999999999997 89999999999999977
No 2
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-68 Score=598.45 Aligned_cols=297 Identities=61% Similarity=0.879 Sum_probs=285.6
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~ 403 (641)
+..++++|+||+|++++|++|.|+|+||+||++|.++|+++|+|+||+||||||||+||||+|+|+|+||+++++++|++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 45566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCC
Q 006534 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (641)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~ 483 (641)
+++|.++.+++++|..|+.++||||||||||+++..|++....++++++++++||||.+||+|....+|+|+|+||+++.
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI 462 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc
Confidence 99999999999999999999999999999999999997544567899999999999999999999999999999999999
Q ss_pred CChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccc
Q 006534 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (641)
Q Consensus 484 LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~I 563 (641)
||+||+||||||++|.+++|+..+|.+|++.|+++.++. .+++++..+|.+|+||+|+||.|+||+|++.|.|++...|
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i 541 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREI 541 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCcc
Confidence 999999999999999999999999999999999886554 4778999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcchhhhhccCChhHHHHHHHHHHHHHHHHhHHhhcCCCCCceeeEeeee
Q 006534 564 EKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRD 625 (641)
Q Consensus 564 t~~d~~~Al~rvi~g~~~~~~~ls~~ek~~va~hEaghAlv~~~l~~~~~~~~~v~kiti~~ 625 (641)
+..||+.|+++++.|++++...++.++++.+||||+|||++++ ++++.|||.||||++
T Consensus 542 ~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~----~l~~~dpl~kvsIiP 599 (774)
T KOG0731|consen 542 GTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGW----LLEHADPLLKVSIIP 599 (774)
T ss_pred chhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhc----cccccCcceeEEecc
Confidence 9999999999999999999999999999999999999999998 679999999999998
No 3
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-69 Score=576.41 Aligned_cols=294 Identities=54% Similarity=0.782 Sum_probs=281.9
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006534 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v 402 (641)
.+...+++|+||-|++|+|++|+|+|+||++|.+|.++|.+.|+||||+||||||||+||||+|+|+++||+++++++|-
T Consensus 295 p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 295 PEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFD 374 (752)
T ss_pred hhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchh
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC
Q 006534 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd 482 (641)
++|+|.++++||++|..|++.+||||||||||+++.+|... ......|++||||.+||||..+.+||||+|||.|+
T Consensus 375 Em~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~----~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe 450 (752)
T KOG0734|consen 375 EMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS----DQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPE 450 (752)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc----HHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChh
Confidence 99999999999999999999999999999999999988642 23388999999999999999999999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 006534 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (641)
Q Consensus 483 ~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~ 562 (641)
.||+||.||||||++|.+|.||..+|.+||+.|+.+ ++++++||+..||+-|.||+|+||+|++|.|++.|+.++...
T Consensus 451 ~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k--i~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~ 528 (752)
T KOG0734|consen 451 ALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK--IPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEM 528 (752)
T ss_pred hhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc--CCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCccc
Confidence 999999999999999999999999999999999975 688899999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcchhhhhccCChhHHHHHHHHHHHHHHHHhHHhhcCCCCCceeeEeeeec
Q 006534 563 VEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRDS 626 (641)
Q Consensus 563 It~~d~~~Al~rvi~g~~~~~~~ls~~ek~~va~hEaghAlv~~~l~~~~~~~~~v~kiti~~~ 626 (641)
|++.|++.|-+++++|.+++...++++.++++||||.|||+|+. ...++.|+||+||.|-
T Consensus 529 VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~----yTk~A~PlhKaTImPR 588 (752)
T KOG0734|consen 529 VTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVAL----YTKGAMPLHKATIMPR 588 (752)
T ss_pred ccHHHHhhhhhheeecccccccccChhhhhhhhhhccCceEEEe----ecCCCccccceeeccC
Confidence 99999999999999999999999999999999999999999986 7889999999999874
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=5.8e-59 Score=530.04 Aligned_cols=420 Identities=43% Similarity=0.629 Sum_probs=336.8
Q ss_pred ccceechHHHHHHHHcCCccEEEEeCcEEEEEEecCCcccchhhhhhhchhhhhhhhccCCcceeEEEecCCCCCcchHH
Q 006534 179 TFVSVPYSDFLSKINSNQVAKVEVDGVHIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPYE 258 (641)
Q Consensus 179 ~~~~~~ys~f~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~ 258 (641)
...+++||+|++++++|+|++|.+.++.+...+....... ......|.+..|......+.
T Consensus 48 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~ 107 (638)
T CHL00176 48 ASSRMTYGRFLEYLDMGWIKKVDLYDNGRTAIVEASSPEL--------------------GNRPQRIRVELPVGASELIQ 107 (638)
T ss_pred CCceecHHHHHHHHHcCCeeEEEEecCceEEEEeeccccC--------------------CCcceeEEEeCCCCCHHHHH
Confidence 4457999999999999999999998765433221110000 00011244444532234567
Q ss_pred HHHhCCceeccCCCCCcchHHH-HHHHHHHHHHHHHHHhhccccc--ccccCccccccCCCCCCCccccCCCcccccccc
Q 006534 259 KMLENQVEFGSPDKRSGGFLNS-ALIALFYVAVLAGLLHRFPVSF--SQTAGQVGHRKTRGPGGAKVSEQGDTITFADVA 335 (641)
Q Consensus 259 ~~~~~~v~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~DV~ 335 (641)
.+.+++|++...+.....++.. ++..+++++++.++++.+.... ....++ ....+.++...........++|+||+
T Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~dv~ 186 (638)
T CHL00176 108 KLKEANIDFDAHPPVLKSNIVTILSNLLLPLILIGVLWFFFQRSSNFKGGPGQ-NLMNFGKSKARFQMEADTGITFRDIA 186 (638)
T ss_pred HHHHcCCcEEecCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cccccchhHHHhhcccCCCCCHHhcc
Confidence 8889999987655444444433 3333445554444432211111 111111 01122222222223445679999999
Q ss_pred CChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHH
Q 006534 336 GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRD 415 (641)
Q Consensus 336 G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~vG~~~~~vr~ 415 (641)
|++++|+++.++++++++++.|..+|...|+|+||+||||||||++|+++|+++++||+.+++++|.++++|.+...+++
T Consensus 187 G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~ 266 (638)
T CHL00176 187 GIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRD 266 (638)
T ss_pred ChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcc
Q 006534 416 LFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFD 495 (641)
Q Consensus 416 lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd 495 (641)
+|..|+..+||||||||||.++..++.+. .+.+++.++++++||.+||++..+.+++||++||+++.+|++++||||||
T Consensus 267 lF~~A~~~~P~ILfIDEID~l~~~r~~~~-~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd 345 (638)
T CHL00176 267 LFKKAKENSPCIVFIDEIDAVGRQRGAGI-GGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFD 345 (638)
T ss_pred HHHHHhcCCCcEEEEecchhhhhcccCCC-CCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCc
Confidence 99999999999999999999998775432 34677889999999999999998899999999999999999999999999
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHH
Q 006534 496 RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (641)
Q Consensus 496 ~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~rv 575 (641)
+++.+++|+.++|.+||+.++++. .+.+++++..+|..|.||+|+||++++++|++.|.++++..|+.+||++|++++
T Consensus 346 ~~I~v~lPd~~~R~~IL~~~l~~~--~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 346 RQITVSLPDREGRLDILKVHARNK--KLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRV 423 (638)
T ss_pred eEEEECCCCHHHHHHHHHHHHhhc--ccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 999999999999999999999763 556788899999999999999999999999999999999999999999999999
Q ss_pred hcchhhhhccCChhHHHHHHHHHHHHHHHHhHHhhcCCCCCceeeEeeeecc
Q 006534 576 IAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRDSK 627 (641)
Q Consensus 576 i~g~~~~~~~ls~~ek~~va~hEaghAlv~~~l~~~~~~~~~v~kiti~~~~ 627 (641)
+.|.+++. ..++.+++++||||+|||++++ +++..+||+||||.+--
T Consensus 424 ~~g~~~~~-~~~~~~~~~vA~hEaGhA~v~~----~l~~~~~v~kvtI~prg 470 (638)
T CHL00176 424 IAGLEGTP-LEDSKNKRLIAYHEVGHAIVGT----LLPNHDPVQKVTLIPRG 470 (638)
T ss_pred HhhhccCc-cccHHHHHHHHHHhhhhHHHHh----hccCCCceEEEEEeecC
Confidence 99988764 5678899999999999999997 78999999999998864
No 5
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-58 Score=479.76 Aligned_cols=255 Identities=47% Similarity=0.763 Sum_probs=244.4
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhH
Q 006534 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~ 401 (641)
.++.|.++|+||.|+++.+++++|.|+. |++|+.|.++|..||+|||||||||||||+||||+|++.++.|+.+.+++|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 4567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC
Q 006534 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (641)
Q Consensus 402 v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~p 481 (641)
+.+|.|+|++.+|++|..|+.++||||||||||+++.+|-.. ..+++.|..+++-+||++||||++..+|-||+|||++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~-~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~ 300 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDS-GTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRP 300 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccC-CCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCc
Confidence 999999999999999999999999999999999999998654 3467889999999999999999999999999999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCc
Q 006534 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (641)
Q Consensus 482 d~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~ 561 (641)
|.|||||+||||||+.|+||+||.++|.+||+.|.++ +.+.+++|++.||+.|+|+||+||+++|.||.+.|.|+.+.
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk--M~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~ 378 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK--MNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRD 378 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh--ccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccC
Confidence 9999999999999999999999999999999999976 47889999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcchh
Q 006534 562 VVEKIDFIHAVERSIAGIE 580 (641)
Q Consensus 562 ~It~~d~~~Al~rvi~g~~ 580 (641)
.||++||.+|+++++....
T Consensus 379 ~Vt~~DF~~Av~KV~~~~~ 397 (406)
T COG1222 379 EVTMEDFLKAVEKVVKKKK 397 (406)
T ss_pred eecHHHHHHHHHHHHhccc
Confidence 9999999999999987543
No 6
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=3.3e-54 Score=494.35 Aligned_cols=411 Identities=48% Similarity=0.727 Sum_probs=339.3
Q ss_pred eechHHHHHHHHcCCccEEEEeCcEEEEEEecCCcccchhhhhhhchhhhhhhhccCCcceeEEEecCCCCCcchHHHHH
Q 006534 182 SVPYSDFLSKINSNQVAKVEVDGVHIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPYEKML 261 (641)
Q Consensus 182 ~~~ys~f~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 261 (641)
.++|+.|.+.+.++.+.++.+....|.+..+++. .|.+..|.+....+..+.
T Consensus 31 ~~~~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~----------------------------~~~~~~~~~~~~l~~~l~ 82 (644)
T PRK10733 31 KVDYSTFLQEVNQDQVREARINGREINVTKKDSN----------------------------RYTTYIPVNDPKLLDNLL 82 (644)
T ss_pred cCCHHHHHHHHHcCCeEEEEEeCCEEEEEEcCCc----------------------------eEEEeCCCCCHHHHHHHH
Confidence 5899999999999999999998888777654431 233433422234567788
Q ss_pred hCCceeccCCCCCcchHHHHHHHHHHHHHHHHHHhhcccccccccCccccccCCCCCCCccccCCCccccccccCChHHH
Q 006534 262 ENQVEFGSPDKRSGGFLNSALIALFYVAVLAGLLHRFPVSFSQTAGQVGHRKTRGPGGAKVSEQGDTITFADVAGVDEAK 341 (641)
Q Consensus 262 ~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~DV~G~~e~K 341 (641)
++++.+...+.....++..++..+.+++++++++..+...++...+ .....+.........+.....+|+|+.|.++++
T Consensus 83 ~~~v~~~~~~~~~~~~~~~i~~~~~~~il~ig~~~v~~g~mt~G~~-~~l~af~~~~~~~~~~~~~~~~~~di~g~~~~~ 161 (644)
T PRK10733 83 TKNVKVVGEPPEEPSLLASIFISWFPMLLLIGVWIFFMRQMQGGGG-KGAMSFGKSKARMLTEDQIKTTFADVAGCDEAK 161 (644)
T ss_pred HcCCeEEecCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-ceeEEeccccccccCchhhhCcHHHHcCHHHHH
Confidence 8898887655444444444444433333333333222111111101 011112222222233445568899999999999
Q ss_pred HHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHHHHH
Q 006534 342 EELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAK 421 (641)
Q Consensus 342 ~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~vG~~~~~vr~lF~~A~ 421 (641)
+++.+++++++.+..|..++...|+|+||+||||||||++|+++|+++++||+.++++++.+.+.|.++..++++|..|+
T Consensus 162 ~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~ 241 (644)
T PRK10733 162 EEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAK 241 (644)
T ss_pred HHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEec
Q 006534 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVE 501 (641)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~ 501 (641)
..+||||||||||.++..++... .+++++.++++++||.+||++..+.+++||+|||+|+.||++++||||||+.|.++
T Consensus 242 ~~~P~IifIDEiD~l~~~r~~~~-~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~ 320 (644)
T PRK10733 242 KAAPCIIFIDEIDAVGRQRGAGL-GGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVG 320 (644)
T ss_pred hcCCcEEEehhHhhhhhccCCCC-CCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcC
Confidence 99999999999999998876532 34577889999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcchhh
Q 006534 502 TPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEK 581 (641)
Q Consensus 502 ~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~rvi~g~~~ 581 (641)
+||.++|.+||+.|+.+ .++.+++++..+|+.|.||||+||.++|++|+..|.+.++..|+..||++|++++..+.++
T Consensus 321 ~Pd~~~R~~Il~~~~~~--~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g~~~ 398 (644)
T PRK10733 321 LPDVRGREQILKVHMRR--VPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAER 398 (644)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhccccc
Confidence 99999999999999976 4677889999999999999999999999999999999999999999999999999999988
Q ss_pred hhccCChhHHHHHHHHHHHHHHHHhHHhhcCCCCCceeeEeeeeccc
Q 006534 582 KTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRDSKS 628 (641)
Q Consensus 582 ~~~~ls~~ek~~va~hEaghAlv~~~l~~~~~~~~~v~kiti~~~~~ 628 (641)
+...+++.+++.+||||+|||++++ ++|..+||+||||++--+
T Consensus 399 ~~~~~~~~~~~~~a~he~gha~~~~----~~~~~~~~~~v~i~prg~ 441 (644)
T PRK10733 399 RSMVMTEAQKESTAYHEAGHAIIGR----LVPEHDPVHKVTIIPRGR 441 (644)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHH----HccCCCceeEEEEeccCC
Confidence 8788889999999999999999997 788999999999988543
No 7
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-55 Score=485.93 Aligned_cols=327 Identities=38% Similarity=0.640 Sum_probs=287.5
Q ss_pred eeEEEecCCCCCcchHHH-HHhCCceeccCCCC---------------------------CcchHHHHHHHHHHHHHHHH
Q 006534 242 RIVYTTTRPSDIKTPYEK-MLENQVEFGSPDKR---------------------------SGGFLNSALIALFYVAVLAG 293 (641)
Q Consensus 242 ~~~~~t~~~~~~~~~~~~-~~~~~v~~~~~~~~---------------------------~~~~~~~~l~~~~~~~~~~~ 293 (641)
-++.+|++|..++..+++ .++++|+++.|+.. ++||++++|..+|..+.+..
T Consensus 322 ivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~ 401 (693)
T KOG0730|consen 322 IVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQA 401 (693)
T ss_pred EEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence 346788899988877774 78899999988742 58999999999999998887
Q ss_pred HHhhcccccccccCccccccCCCCCCCccccCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEc
Q 006534 294 LLHRFPVSFSQTAGQVGHRKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVG 372 (641)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~G 372 (641)
..+.+ ..+....++ .+.++......+.|+++|+||.|++++|++|++.|.+ +++|+.|.++|..+|+||||||
T Consensus 402 ~r~~~-~~~~~A~~~-----i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyG 475 (693)
T KOG0730|consen 402 TRRTL-EIFQEALMG-----IRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYG 475 (693)
T ss_pred hhhhH-HHHHHHHhc-----CCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEEC
Confidence 65411 111111111 1222333444677999999999999999999999999 9999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHH
Q 006534 373 LPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDER 452 (641)
Q Consensus 373 PPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~ 452 (641)
|||||||++|||+|++++++|+++.+.++.++|+|++++.++++|++|+..+|||||+||||+++..|++. ++...
T Consensus 476 PPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~----~~~v~ 551 (693)
T KOG0730|consen 476 PPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGS----SSGVT 551 (693)
T ss_pred CCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCC----ccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999743 22677
Q ss_pred HHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHH
Q 006534 453 EQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDI 532 (641)
Q Consensus 453 ~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~L 532 (641)
++++++||++|||+....+|+||||||||+.||+||+||||||+.|+|++||.+.|.+||+.++++ +++.+++|+..|
T Consensus 552 ~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk--mp~~~~vdl~~L 629 (693)
T KOG0730|consen 552 DRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK--MPFSEDVDLEEL 629 (693)
T ss_pred HHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc--CCCCccccHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999965 688899999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHHHhcC--CccccHHHHHHHHHHHhcchh
Q 006534 533 ASMTTGFTGADLANLVNEAALLAGRLN--KVVVEKIDFIHAVERSIAGIE 580 (641)
Q Consensus 533 A~~t~GfSgaDL~~Lv~eAa~~A~r~~--~~~It~~d~~~Al~rvi~g~~ 580 (641)
|+.|+||||+||.++|++|+..|.+++ ...|+.+||++|+..+...+.
T Consensus 630 a~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s~~ 679 (693)
T KOG0730|consen 630 AQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPSLT 679 (693)
T ss_pred HHHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcccCC
Confidence 999999999999999999999999874 567899999999987765543
No 8
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-54 Score=468.12 Aligned_cols=337 Identities=36% Similarity=0.585 Sum_probs=285.0
Q ss_pred eeEEEecCCCCCcchHHH--HHhCCceeccCCCC---------------------------CcchHHHHHHHHHHHHHHH
Q 006534 242 RIVYTTTRPSDIKTPYEK--MLENQVEFGSPDKR---------------------------SGGFLNSALIALFYVAVLA 292 (641)
Q Consensus 242 ~~~~~t~~~~~~~~~~~~--~~~~~v~~~~~~~~---------------------------~~~~~~~~l~~~~~~~~~~ 292 (641)
-++.+|++|+.+++.+++ .++++|.++.|++. ++||++++|.+|+..+.+.
T Consensus 331 lVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~v 410 (802)
T KOG0733|consen 331 LVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFV 410 (802)
T ss_pred EEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHH
Confidence 356799999999888774 78899999888752 6899999999999999888
Q ss_pred HHHhhccccc-----cc-ccCc----c-ccc---c---------------------CC----------------------
Q 006534 293 GLLHRFPVSF-----SQ-TAGQ----V-GHR---K---------------------TR---------------------- 315 (641)
Q Consensus 293 ~~~~~~~~~~-----~~-~~~~----~-~~~---~---------------------~~---------------------- 315 (641)
++-+.+-..- .. ..+. . ... . ..
T Consensus 411 AikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al 490 (802)
T KOG0733|consen 411 AIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEAL 490 (802)
T ss_pred HHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHH
Confidence 8655331100 00 0000 0 000 0 00
Q ss_pred ----CCCCCccccCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC
Q 006534 316 ----GPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (641)
Q Consensus 316 ----~~~~~~~~~~~~~vtf~DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg 390 (641)
++.....-..-|.|+|+||.|+++++.+|...+.+ .++|+.|..+|...|.|||||||||||||+||||+|+|++
T Consensus 491 ~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag 570 (802)
T KOG0733|consen 491 SKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAG 570 (802)
T ss_pred HhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhcc
Confidence 00000111234789999999999999999988877 9999999999999999999999999999999999999999
Q ss_pred CCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCC
Q 006534 391 VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (641)
Q Consensus 391 ~pfi~vs~se~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~ 470 (641)
.+|++|.+.+++++|+|+++..||.+|..|+..+||||||||+|+|.+.|+.. +.....+++||||+||||.....
T Consensus 571 ~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~----~s~~s~RvvNqLLtElDGl~~R~ 646 (802)
T KOG0733|consen 571 ANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDE----GSSVSSRVVNQLLTELDGLEERR 646 (802)
T ss_pred CceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCC----CchhHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999754 35566899999999999999999
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC--CCCHHHHHHHH
Q 006534 471 AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT--GFTGADLANLV 548 (641)
Q Consensus 471 ~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~--GfSgaDL~~Lv 548 (641)
+|.|||||||||.+|||++||||||+.++|++|+.++|.+||+.+.++.+.++.+|||+++||+.+. ||||+||..||
T Consensus 647 gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLv 726 (802)
T KOG0733|consen 647 GVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALV 726 (802)
T ss_pred ceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHH
Confidence 9999999999999999999999999999999999999999999999877789999999999999777 99999999999
Q ss_pred HHHHHHHHhcC----------------CccccHHHHHHHHHHHhcchhhh
Q 006534 549 NEAALLAGRLN----------------KVVVEKIDFIHAVERSIAGIEKK 582 (641)
Q Consensus 549 ~eAa~~A~r~~----------------~~~It~~d~~~Al~rvi~g~~~~ 582 (641)
++|...|.++. ...++..||++|+.++.....++
T Consensus 727 reAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~ 776 (802)
T KOG0733|consen 727 REASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSER 776 (802)
T ss_pred HHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccHH
Confidence 99999997741 12467789999999987765443
No 9
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=4.5e-51 Score=456.37 Aligned_cols=300 Identities=62% Similarity=0.886 Sum_probs=278.6
Q ss_pred ccccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhh
Q 006534 321 KVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (641)
Q Consensus 321 ~~~~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se 400 (641)
...++.+.++|+||+|++++|+++.++++++++++.|...|.++|+|+||+||||||||++|+++|+++++||+.+++++
T Consensus 44 ~~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~ 123 (495)
T TIGR01241 44 LLNEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSD 123 (495)
T ss_pred cccCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCC
Q 006534 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (641)
Q Consensus 401 ~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~ 480 (641)
+.+.+.|.+++.++++|+.|+..+||||||||||.++..++.. ....+++..+++++||.+||++..+.+++||+|||+
T Consensus 124 ~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~-~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~ 202 (495)
T TIGR01241 124 FVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG-LGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNR 202 (495)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccC-cCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCC
Confidence 9999999999999999999999999999999999999887643 223467788999999999999998889999999999
Q ss_pred CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCC
Q 006534 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (641)
Q Consensus 481 pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~ 560 (641)
++.||++++||||||+.|+++.|+.++|.+||+.++.+. ++..++++..+|..+.|||++||.++|++|+..|.++++
T Consensus 203 ~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~--~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~ 280 (495)
T TIGR01241 203 PDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK--KLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNK 280 (495)
T ss_pred hhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC--CCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999764 445678899999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhcchhhhhccCChhHHHHHHHHHHHHHHHHhHHhhcCCCCCceeeEeeeecc
Q 006534 561 VVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRDSK 627 (641)
Q Consensus 561 ~~It~~d~~~Al~rvi~g~~~~~~~ls~~ek~~va~hEaghAlv~~~l~~~~~~~~~v~kiti~~~~ 627 (641)
..|+.+||.+|++++..+.+++...+++.+++.+||||+|||++++ +++..+||++|||.+..
T Consensus 281 ~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~~----~l~~~~~v~~vsi~prg 343 (495)
T TIGR01241 281 TEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGHALVGL----LLKDADPVHKVTIIPRG 343 (495)
T ss_pred CCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhHHHHHH----hcCCCCceEEEEEeecC
Confidence 9999999999999999998887778899999999999999999997 77888999999998753
No 10
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=6e-48 Score=460.63 Aligned_cols=259 Identities=21% Similarity=0.289 Sum_probs=225.8
Q ss_pred hhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHH----------------------------
Q 006534 354 PDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY---------------------------- 405 (641)
Q Consensus 354 p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~---------------------------- 405 (641)
...+.++|..+|+||||+||||||||+||||+|+++++||+.+++++|++.+
T Consensus 1619 kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~ 1698 (2281)
T CHL00206 1619 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLD 1698 (2281)
T ss_pred cCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccc
Confidence 3456788999999999999999999999999999999999999999998643
Q ss_pred ---------------hhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC---
Q 006534 406 ---------------VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--- 467 (641)
Q Consensus 406 ---------------vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~--- 467 (641)
++++..+++++|+.|++++||||||||||+|+.+. ....++++|+.+|++..
T Consensus 1699 ~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d----------s~~ltL~qLLneLDg~~~~~ 1768 (2281)
T CHL00206 1699 TELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE----------SNYLSLGLLVNSLSRDCERC 1768 (2281)
T ss_pred hhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc----------cceehHHHHHHHhccccccC
Confidence 22234459999999999999999999999997542 22456899999999874
Q ss_pred CCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCC-CCHHHHHHhCCCCCHHHHHH
Q 006534 468 SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-IDLGDIASMTTGFTGADLAN 546 (641)
Q Consensus 468 ~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~d-vdl~~LA~~t~GfSgaDL~~ 546 (641)
...+|+||||||+|+.|||||+||||||+.|.|+.|+..+|++++..++..+++++.++ ++++.+|+.|.|||||||++
T Consensus 1769 s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLan 1848 (2281)
T CHL00206 1769 STRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVA 1848 (2281)
T ss_pred CCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHH
Confidence 45689999999999999999999999999999999999999999987765566777654 68999999999999999999
Q ss_pred HHHHHHHHHHhcCCccccHHHHHHHHHHHhcchhhhhccCChhHHHHHHHHHHHHHHHHhHHhhcCCCCCceeeEeeeec
Q 006534 547 LVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRDS 626 (641)
Q Consensus 547 Lv~eAa~~A~r~~~~~It~~d~~~Al~rvi~g~~~~~~~ls~~ek~~va~hEaghAlv~~~l~~~~~~~~~v~kiti~~~ 626 (641)
+|+||+..|+++++..|+.++++.|++|++.|++.+... ..++ .+++||+|||+++. ++++.+||+||||++.
T Consensus 1849 LvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~~~--~~~~-~ia~yEiGhAvvq~----~L~~~~pv~kISIy~~ 1921 (2281)
T CHL00206 1849 LTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRS--VQDH-GILFYQIGRAVAQN----VLLSNCPIDPISIYMK 1921 (2281)
T ss_pred HHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhcccC--cchh-hhhhhHHhHHHHHH----hccCCCCcceEEEecC
Confidence 999999999999999999999999999999998765332 3333 36999999999997 7899999999999877
Q ss_pred ccc
Q 006534 627 KSQ 629 (641)
Q Consensus 627 ~~~ 629 (641)
++.
T Consensus 1922 ~~~ 1924 (2281)
T CHL00206 1922 KKS 1924 (2281)
T ss_pred Ccc
Confidence 654
No 11
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-46 Score=372.28 Aligned_cols=259 Identities=42% Similarity=0.682 Sum_probs=244.9
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhH
Q 006534 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~ 401 (641)
.++.|.+|+.||.|+.+..+.|+++++. +.+|++|..+|..+|+|||||||||||||++|+|+|+..+.-|+.+-++++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 4678999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC
Q 006534 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (641)
Q Consensus 402 v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~p 481 (641)
+.+|+|+++..+|++|+.|+....||||+||||++++.|-+. ..+++.+..+++-+|+.++|+|+...+|-|+.|||+|
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfdd-g~ggdnevqrtmleli~qldgfdprgnikvlmatnrp 326 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDD-GAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRP 326 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccC-CCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCC
Confidence 999999999999999999999999999999999999888543 2456778899999999999999999999999999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCc
Q 006534 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (641)
Q Consensus 482 d~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~ 561 (641)
+.|||||+||||+|+.++|.+||.+.|..|++.|.+. +.+..++-++.||+.+..-+|++|+.+|.+|.+.|++..+.
T Consensus 327 dtldpallrpgrldrkvef~lpdlegrt~i~kihaks--msverdir~ellarlcpnstgaeirsvcteagmfairarrk 404 (435)
T KOG0729|consen 327 DTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKS--MSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRK 404 (435)
T ss_pred CCcCHhhcCCcccccceeccCCcccccceeEEEeccc--cccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhh
Confidence 9999999999999999999999999999999999865 56778899999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcchhhhhc
Q 006534 562 VVEKIDFIHAVERSIAGIEKKTA 584 (641)
Q Consensus 562 ~It~~d~~~Al~rvi~g~~~~~~ 584 (641)
..|..||.+|+++++.|..+.+.
T Consensus 405 ~atekdfl~av~kvvkgy~kfsa 427 (435)
T KOG0729|consen 405 VATEKDFLDAVNKVVKGYAKFSA 427 (435)
T ss_pred hhhHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999877543
No 12
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-45 Score=405.54 Aligned_cols=252 Identities=39% Similarity=0.657 Sum_probs=227.6
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhH
Q 006534 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~ 401 (641)
.++-|+|+|+||.|++++|.++.+-+.. |++|+.|.. |.+...|||||||||||||++|||+|.|+...|++|.+.++
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL 741 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 741 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH
Confidence 3556899999999999999999999998 899887654 88888999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC--CCCcEEEEEecC
Q 006534 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--SNSAVIVLGATN 479 (641)
Q Consensus 402 v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~--~~~~ViVIaATN 479 (641)
++||+|++++++|++|++|+..+|||||+||+|.|+++|+.... +....++++.|||.|||++. +..+|+||+|||
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGD--SGGVMDRVVSQLLAELDgls~~~s~~VFViGATN 819 (953)
T KOG0736|consen 742 LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGD--SGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATN 819 (953)
T ss_pred HHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCC--ccccHHHHHHHHHHHhhcccCCCCCceEEEecCC
Confidence 99999999999999999999999999999999999999987543 34577899999999999997 567899999999
Q ss_pred CCCCCChhhhCCCCcceEEEecCCC-HHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC-CCCHHHHHHHHHHHHHHHHh
Q 006534 480 RSDVLDPALRRPGRFDRVVMVETPD-KIGREAILKVHVSKKELPLAKDIDLGDIASMTT-GFTGADLANLVNEAALLAGR 557 (641)
Q Consensus 480 ~pd~LDpALlRpgRFd~~I~v~~Pd-~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~-GfSgaDL~~Lv~eAa~~A~r 557 (641)
|||.|||+|+||||||+.+++.+++ .+.+..+|+...++ +.++++||+.+||+.++ .|||+|+-.+|..|.+.|.+
T Consensus 820 RPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk--FkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~Aik 897 (953)
T KOG0736|consen 820 RPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK--FKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIK 897 (953)
T ss_pred CccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH--ccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999875 56677899998876 57899999999999875 79999999999999999987
Q ss_pred c-----------------CCccccHHHHHHHHHHHhcch
Q 006534 558 L-----------------NKVVVEKIDFIHAVERSIAGI 579 (641)
Q Consensus 558 ~-----------------~~~~It~~d~~~Al~rvi~g~ 579 (641)
+ ..-.|+++||.+|+++....+
T Consensus 898 R~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSv 936 (953)
T KOG0736|consen 898 RTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSV 936 (953)
T ss_pred HHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcc
Confidence 5 123689999999998876654
No 13
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-44 Score=361.86 Aligned_cols=251 Identities=44% Similarity=0.694 Sum_probs=238.2
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v 402 (641)
.+.|.+++.||.|++-.|+++++.++. +.+.+.|.+.|..+|+|||||||||||||+||||+|+.....|+.+.+++|+
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 456889999999999999999999999 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC
Q 006534 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd 482 (641)
.+|.|++...+|++|..|+.++|+||||||||+++.+|-+.. .+.+.+..+++-+||++||||+...+|-||.|||+.+
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaq-tgadrevqril~ellnqmdgfdq~~nvkvimatnrad 305 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQ-TGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD 305 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhcccc-ccccHHHHHHHHHHHHhccCcCcccceEEEEecCccc
Confidence 999999999999999999999999999999999998885542 5677888999999999999999999999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 006534 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (641)
Q Consensus 483 ~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~ 562 (641)
.|||||+||||+|+.|+||+||..+++-++.....+. .+.+++|++.+..+-+..||+||..+|++|.+.|.|.++-.
T Consensus 306 tldpallrpgrldrkiefplpdrrqkrlvf~titskm--~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryv 383 (408)
T KOG0727|consen 306 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKM--NLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYV 383 (408)
T ss_pred ccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcc--cCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhccee
Confidence 9999999999999999999999999999999988764 67899999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhc
Q 006534 563 VEKIDFIHAVERSIA 577 (641)
Q Consensus 563 It~~d~~~Al~rvi~ 577 (641)
|...||++|...++.
T Consensus 384 vl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 384 VLQKDFEKAYKTVVK 398 (408)
T ss_pred eeHHHHHHHHHhhcC
Confidence 999999999988764
No 14
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-45 Score=396.50 Aligned_cols=227 Identities=45% Similarity=0.764 Sum_probs=214.0
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHH
Q 006534 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (641)
Q Consensus 326 ~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~ 405 (641)
.+.++|.||.|++....+|.+++..+++|+.|..+|..||+||||+||||||||+||+|+|+|+++||+.+++.++++.+
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCC----CcEEEEEecCCC
Q 006534 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN----SAVIVLGATNRS 481 (641)
Q Consensus 406 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~----~~ViVIaATN~p 481 (641)
.|++++++|++|++|+..+||||||||||+++++|+. ++.+--++++.|||+.||++... .+|+||+|||||
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~----aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE----AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhh----HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 9999999999999999999999999999999999974 34445568899999999998654 679999999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 006534 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (641)
Q Consensus 482 d~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~ 558 (641)
|.|||+|+|+||||+.|.+..|+..+|.+||+..+++ +.++.++|+..||+.|+||.|+||..||.+|+..|.++
T Consensus 340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~--lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRG--LRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred cccCHHHhccccccceeeecCCchHHHHHHHHHHHhh--CCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999964 67788999999999999999999999999999999875
No 15
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-44 Score=360.66 Aligned_cols=252 Identities=41% Similarity=0.659 Sum_probs=239.3
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v 402 (641)
+.-|..+++-|.|++...++++++++. .++|+.|..+|...|+|+|||||||||||+||+|+|....+.|+.+++++++
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 344677899999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC
Q 006534 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd 482 (641)
.+|.|++...+|++|-.|+.++|+|||.||||.++..|..+. .+++.+..+++-+||.++|||+...++-||.|||+.|
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~-~ggdsevqrtmlellnqldgfeatknikvimatnrid 297 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESG-SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRID 297 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCC-CCccHHHHHHHHHHHHhccccccccceEEEEeccccc
Confidence 999999999999999999999999999999999999887653 4578889999999999999999999999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 006534 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (641)
Q Consensus 483 ~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~ 562 (641)
.|||||+||||+|+.|+||+|+.+.|.+||+.|.++. .+...+++..+|+...|.||+++..+|.+|.+.|.|+.+..
T Consensus 298 ild~allrpgridrkiefp~p~e~ar~~ilkihsrkm--nl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvh 375 (404)
T KOG0728|consen 298 ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM--NLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVH 375 (404)
T ss_pred cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhh--chhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhcc
Confidence 9999999999999999999999999999999999774 56788999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcc
Q 006534 563 VEKIDFIHAVERSIAG 578 (641)
Q Consensus 563 It~~d~~~Al~rvi~g 578 (641)
+|++||+-|+.+++..
T Consensus 376 vtqedfemav~kvm~k 391 (404)
T KOG0728|consen 376 VTQEDFEMAVAKVMQK 391 (404)
T ss_pred ccHHHHHHHHHHHHhc
Confidence 9999999999999863
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-44 Score=360.86 Aligned_cols=252 Identities=38% Similarity=0.644 Sum_probs=237.3
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v 402 (641)
.+.|+-+++||.|++...++|.+.+.. +.++++|..+|.++|+|+|+|||||||||++|||+|...+..|+.+.+..++
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 456778999999999999999887666 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC
Q 006534 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd 482 (641)
.||.|.+++.+|+.|..|+..+|+||||||+|+++.+|.++. ..++.+..+++-+||.++|||.++..|-||||||+.+
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSe-k~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvD 321 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE-KAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVD 321 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhcccccccc-ccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccc
Confidence 999999999999999999999999999999999999886543 3567788899999999999999999999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 006534 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (641)
Q Consensus 483 ~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~ 562 (641)
.|||||+|+||+|+.|+||.|+.+.|..|++.|.++. .+.+|+++++||+.|++|+|+++..+|-+|.+.|.|++...
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKM--nv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~ate 399 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKM--NVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATE 399 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhc--CCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccccc
Confidence 9999999999999999999999999999999999774 56789999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcc
Q 006534 563 VEKIDFIHAVERSIAG 578 (641)
Q Consensus 563 It~~d~~~Al~rvi~g 578 (641)
|+.+||.+++.++.+.
T Consensus 400 v~heDfmegI~eVqak 415 (424)
T KOG0652|consen 400 VTHEDFMEGILEVQAK 415 (424)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 9999999999887653
No 17
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-44 Score=363.84 Aligned_cols=252 Identities=41% Similarity=0.684 Sum_probs=239.5
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v 402 (641)
+..|.-+|+|+.|++...+++++.++. |.+|+-|..+|.++|+||+|||+||||||+||+|+|+.....|+.+-+++++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 456778999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC
Q 006534 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd 482 (641)
.+|.|.+.+.+|++|..|..++|+|+||||||+++.+|-+. ..++..+..+++-+||+++|||++...|-||.|||+.+
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds-~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie 335 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDS-NSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 335 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccC-CCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccc
Confidence 99999999999999999999999999999999999988654 34667788899999999999999999999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 006534 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (641)
Q Consensus 483 ~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~ 562 (641)
.|||||.||||+|+.|+|+.||...++.|+..|..+ +.+.++|+++.+...-+.+||+||..+|.+|.++|.|+.+..
T Consensus 336 ~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~--Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~ 413 (440)
T KOG0726|consen 336 TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSR--MTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMK 413 (440)
T ss_pred ccCHhhcCCCccccccccCCCchhhhceeEEEeecc--cchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhh
Confidence 999999999999999999999999999999999976 478899999999998899999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcc
Q 006534 563 VEKIDFIHAVERSIAG 578 (641)
Q Consensus 563 It~~d~~~Al~rvi~g 578 (641)
++++||..|.++++..
T Consensus 414 vt~~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 414 VTMEDFKKAKEKVLYK 429 (440)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 9999999999999864
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=3.2e-43 Score=352.95 Aligned_cols=242 Identities=39% Similarity=0.615 Sum_probs=221.9
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~ 403 (641)
+..+.++|+||+|++++|..-+-++++|.+|++|.. =.|++||+|||||||||++|||+|+++++||+.+...+++.
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 456789999999999999999999999999999855 46999999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCC
Q 006534 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (641)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~ 483 (641)
.++|.++.+++++|+.|++.+|||+||||+|+++-.|.-+ .........+|.||++||+...+.+|+.|||||+|+.
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQ---elRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~ 266 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQ---ELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPEL 266 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHH---HhcccHHHHHHHHHHhccCcccCCceEEEeecCChhh
Confidence 9999999999999999999999999999999998766421 1223356789999999999999999999999999999
Q ss_pred CChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHH-HHHHHHHHHHHhcCCcc
Q 006534 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLA-NLVNEAALLAGRLNKVV 562 (641)
Q Consensus 484 LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~-~Lv~eAa~~A~r~~~~~ 562 (641)
||+++++ ||...|+|.+|+.++|..|++.++++. |+.-+.+++.++..|.|+||+||. .++..|...|..++++.
T Consensus 267 LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~--Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~ 342 (368)
T COG1223 267 LDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKF--PLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREK 342 (368)
T ss_pred cCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhC--CCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhh
Confidence 9999998 999999999999999999999999764 666677899999999999999995 67888899999999999
Q ss_pred ccHHHHHHHHHHH
Q 006534 563 VEKIDFIHAVERS 575 (641)
Q Consensus 563 It~~d~~~Al~rv 575 (641)
|+.+|++.|+.+.
T Consensus 343 v~~edie~al~k~ 355 (368)
T COG1223 343 VEREDIEKALKKE 355 (368)
T ss_pred hhHHHHHHHHHhh
Confidence 9999999999873
No 19
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-43 Score=367.15 Aligned_cols=249 Identities=37% Similarity=0.581 Sum_probs=224.2
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v 402 (641)
...|.++|+||+|++++|+-|+|.|.. +..|+.|. -..+|-+|||++||||||||+||||+|.|++..||.|+.+.+.
T Consensus 204 ~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~-GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 204 QRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFK-GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred ccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHh-hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 345789999999999999999998887 66776554 4567889999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCC----CcEEEEEec
Q 006534 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN----SAVIVLGAT 478 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~----~~ViVIaAT 478 (641)
++|.|++++.||-+|+.|+..+|++|||||||+|+.+|++. +.++..+++.++||.+|||.... .-|+|+|||
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s---~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAAT 359 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS---SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAAT 359 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc---cchhHHHHHHHHHHHHhhccccccccceeEEEEecc
Confidence 99999999999999999999999999999999999999853 57788899999999999998643 338999999
Q ss_pred CCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 006534 479 NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (641)
Q Consensus 479 N~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~ 558 (641)
|.|+.||+||+| ||.+.|+||+||.++|..+|+..++. ++++++++++.|++.++||||+||.++|++|.+.+.|+
T Consensus 360 N~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~--~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR 435 (491)
T KOG0738|consen 360 NFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRS--VELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRR 435 (491)
T ss_pred CCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhcc--ccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999999964 68889999999999999999999999999999999874
Q ss_pred C-----------------CccccHHHHHHHHHHHhcchh
Q 006534 559 N-----------------KVVVEKIDFIHAVERSIAGIE 580 (641)
Q Consensus 559 ~-----------------~~~It~~d~~~Al~rvi~g~~ 580 (641)
. +..|+++||++|+.++.....
T Consensus 436 ~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 436 KIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 1 234788999999988866543
No 20
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=8e-42 Score=371.57 Aligned_cols=252 Identities=42% Similarity=0.671 Sum_probs=234.0
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v 402 (641)
++.|.++|+||+|++.+|+++++.+++ +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 456889999999999999999999986 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC
Q 006534 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd 482 (641)
..|.|.++..++++|..|+..+||||||||||.++.++.+.. .+.+.+..+++.+|+.+|+++....+++||+|||+++
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~-~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d 295 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ-TGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 295 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcccccccc-CCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCch
Confidence 999999999999999999999999999999999987764321 2234566788999999999998888999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 006534 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (641)
Q Consensus 483 ~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~ 562 (641)
.||++++||||||+.|++++|+.++|.+||+.++.+. .+..++++..++..|+||||+||.++|++|.+.|.++++..
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~--~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~ 373 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM--NLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYV 373 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC--CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999999764 56788999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcc
Q 006534 563 VEKIDFIHAVERSIAG 578 (641)
Q Consensus 563 It~~d~~~Al~rvi~g 578 (641)
|+++||.+|+++++.+
T Consensus 374 i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 374 ILPKDFEKGYKTVVRK 389 (398)
T ss_pred cCHHHHHHHHHHHHhc
Confidence 9999999999998765
No 21
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.5e-40 Score=361.30 Aligned_cols=256 Identities=47% Similarity=0.764 Sum_probs=235.4
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v 402 (641)
.+.|.++|+||+|+++++++|.+.+.. +.+|+.|..+|..+|+|||||||||||||++|+++|++++.+|+.++++++.
T Consensus 123 ~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~ 202 (389)
T PRK03992 123 IESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 202 (389)
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh
Confidence 355789999999999999999999987 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC
Q 006534 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd 482 (641)
..|.|.++..++.+|+.|+..+||||||||+|.++..+.+.. ..+..+..+++.+++.+++++....+++||+|||+++
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~-~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~ 281 (389)
T PRK03992 203 QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSG-TSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRID 281 (389)
T ss_pred HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCC-CCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChh
Confidence 999999999999999999999999999999999987775432 2234566788999999999998888999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 006534 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (641)
Q Consensus 483 ~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~ 562 (641)
.+|++++||||||+.|+|++|+.++|.+||+.++.+ ..+..++++..+|..|+||+|+||.++|++|+..|.+++...
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~--~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~ 359 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK--MNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTE 359 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc--CCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999865 456677899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcchhhh
Q 006534 563 VEKIDFIHAVERSIAGIEKK 582 (641)
Q Consensus 563 It~~d~~~Al~rvi~g~~~~ 582 (641)
|+.+||.+|++++.....+.
T Consensus 360 i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 360 VTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred cCHHHHHHHHHHHhcccccc
Confidence 99999999999987765443
No 22
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.8e-40 Score=386.89 Aligned_cols=251 Identities=45% Similarity=0.795 Sum_probs=229.7
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v 402 (641)
.+.+.++|+||+|++++|++|++.+.+ +++++.|..+|.++|+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 445 ~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~ 524 (733)
T TIGR01243 445 VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIL 524 (733)
T ss_pred ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHh
Confidence 345789999999999999999999997 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC
Q 006534 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd 482 (641)
++|+|+++..++.+|..|+..+||||||||||.+++.++.. ......++++++||.+||++....+++||+|||+|+
T Consensus 525 ~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~---~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~ 601 (733)
T TIGR01243 525 SKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGAR---FDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPD 601 (733)
T ss_pred hcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCC---CCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChh
Confidence 99999999999999999999999999999999999887642 223355789999999999998888999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC---
Q 006534 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN--- 559 (641)
Q Consensus 483 ~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~--- 559 (641)
.||++++||||||+.|++++||.++|.+||+.+.++ .++.+++++..+|+.|+||||+||.++|++|+..|.++.
T Consensus 602 ~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~--~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~ 679 (733)
T TIGR01243 602 ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS--MPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGS 679 (733)
T ss_pred hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC--CCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999998864 567788999999999999999999999999999887741
Q ss_pred ---------------CccccHHHHHHHHHHHhcch
Q 006534 560 ---------------KVVVEKIDFIHAVERSIAGI 579 (641)
Q Consensus 560 ---------------~~~It~~d~~~Al~rvi~g~ 579 (641)
...|+.+||.+|+.++....
T Consensus 680 ~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~ 714 (733)
T TIGR01243 680 PAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSV 714 (733)
T ss_pred ccchhhhcccccccccCcccHHHHHHHHHHcCCCC
Confidence 13689999999998876553
No 23
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-40 Score=366.90 Aligned_cols=226 Identities=42% Similarity=0.663 Sum_probs=213.1
Q ss_pred CccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHH
Q 006534 327 DTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (641)
Q Consensus 327 ~~vtf~DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~ 405 (641)
..+.|+||+|+.++|+.|++++++ -+.|..|...+.+.+.|||||||||||||+||.|+|..+++.|+++.+.+++++|
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY 741 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH
Confidence 349999999999999999999999 7899999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCC
Q 006534 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (641)
Q Consensus 406 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LD 485 (641)
.|.+++.+|++|.+|+..+|||+|+||+|.++++|+.. +.....+++||||++|||.+.-.+|.|+|||.|||.||
T Consensus 742 IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD----sTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliD 817 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD----STGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLID 817 (952)
T ss_pred hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC----CCCchHHHHHHHHHhhccccccceEEEEEecCCccccC
Confidence 99999999999999999999999999999999999743 23345789999999999999999999999999999999
Q ss_pred hhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 006534 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (641)
Q Consensus 486 pALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~ 558 (641)
|||+||||+|+.++.+.|+..+|.+|++..... ..+++++|++.+|..|+||||+||..++..|.+.|..+
T Consensus 818 pALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s--~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 818 PALLRPGRLDKLVYCPLPDEPERLEILQVLSNS--LLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred HhhcCCCccceeeeCCCCCcHHHHHHHHHHhhc--cCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999865 46788999999999999999999999999999888653
No 24
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-40 Score=368.79 Aligned_cols=299 Identities=44% Similarity=0.656 Sum_probs=252.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhc---ccccccccCcccc--ccCCCCCCCccccCCCccccccccCChHHHHHHHHH
Q 006534 273 RSGGFLNSALIALFYVAVLAGLLHRF---PVSFSQTAGQVGH--RKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEI 347 (641)
Q Consensus 273 ~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vtf~DV~G~~e~K~~L~ei 347 (641)
.+.++....+..++-.+.+..+.+.. +............ .....+ ..+....+.++|+|++|++++|+.+++.
T Consensus 180 ~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~v~~~diggl~~~k~~l~e~ 257 (494)
T COG0464 180 RTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPS--RGVLFEDEDVTLDDIGGLEEAKEELKEA 257 (494)
T ss_pred hcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcc--cccccCCCCcceehhhcHHHHHHHHHHH
Confidence 45677778877777666555544321 0000000000000 000111 2334567889999999999999999999
Q ss_pred HHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCc
Q 006534 348 VEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPS 426 (641)
Q Consensus 348 v~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~vG~~~~~vr~lF~~A~~~aP~ 426 (641)
+++ ++.++.|...+.++|+|+|||||||||||+||+|+|.+++.+|+.+.+++++++|+|++++.++.+|..|+..+||
T Consensus 258 v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~ 337 (494)
T COG0464 258 IETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPS 337 (494)
T ss_pred HHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCc
Confidence 999 7899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHH
Q 006534 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKI 506 (641)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~ 506 (641)
||||||+|++...++.. .+....+++++||.+|++.+...+|+||+|||+|+.+|++++||||||+.++|++||..
T Consensus 338 iiFiDEiDs~~~~r~~~----~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 338 IIFIDEIDSLASGRGPS----EDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred EEEEEchhhhhccCCCC----CchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 99999999999988642 22233689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC-CccccHHHHHHHHHHHhc
Q 006534 507 GREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN-KVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 507 eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~-~~~It~~d~~~Al~rvi~ 577 (641)
+|.+|++.++.+....+..++++..+++.|+||+|+||..+|.+|++.+.++. ...|+++||.+|+.+...
T Consensus 414 ~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~~p 485 (494)
T COG0464 414 ERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREVTLDDFLDALKKIKP 485 (494)
T ss_pred HHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhcCC
Confidence 99999999998766667789999999999999999999999999999999988 788999999999988443
No 25
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=3.9e-40 Score=361.19 Aligned_cols=252 Identities=42% Similarity=0.688 Sum_probs=233.5
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v 402 (641)
++.|.++|+||.|++++++++++.++. +.+|+.|..+|..+|+++|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 345789999999999999999999986 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC
Q 006534 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd 482 (641)
..|.|.++..++++|..|+.+.||||||||||.++.++.... .++..+..+++.+||.++|++....++.||+|||+++
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~-sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d 333 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDAT-SGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 333 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCC-CcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChH
Confidence 999999999999999999999999999999999998775322 2345566788899999999998888999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 006534 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (641)
Q Consensus 483 ~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~ 562 (641)
.||++++||||||+.|+|++||.++|.+||+.++.+ ..+.+++++..++..++||||+||.++|++|+..|.++++..
T Consensus 334 ~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k--~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~ 411 (438)
T PTZ00361 334 SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK--MTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMK 411 (438)
T ss_pred HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc--CCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999875 456788999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcc
Q 006534 563 VEKIDFIHAVERSIAG 578 (641)
Q Consensus 563 It~~d~~~Al~rvi~g 578 (641)
|+.+||..|+++++..
T Consensus 412 Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 412 VTQADFRKAKEKVLYR 427 (438)
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999998654
No 26
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=2.4e-38 Score=351.56 Aligned_cols=244 Identities=27% Similarity=0.438 Sum_probs=215.3
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHh
Q 006534 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (641)
Q Consensus 327 ~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~v 406 (641)
+.++|+||+|++.+|+.|++....+ +..+...|.+.|+|+|||||||||||++|+++|++++.||+.++++.+.+.++
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 5688999999999999999866543 33456779999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCCh
Q 006534 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDP 486 (641)
Q Consensus 407 G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDp 486 (641)
|+++.+++++|+.|+..+||||||||||.+...++.. +......+++++|+..|+. .+.+|+||||||+++.||+
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~---~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~ 375 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK---GDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPL 375 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC---CCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCH
Confidence 9999999999999999999999999999998654321 2334567889999999884 3567999999999999999
Q ss_pred hhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHH
Q 006534 487 ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKI 566 (641)
Q Consensus 487 ALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~ 566 (641)
+++|+||||+.++++.|+.++|.+||+.++.+.......+.+++.+|+.|.||||+||+++|++|+..|..++ ..++.+
T Consensus 376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~~ 454 (489)
T CHL00195 376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTTD 454 (489)
T ss_pred HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCHH
Confidence 9999999999999999999999999999998754333457889999999999999999999999999998766 468999
Q ss_pred HHHHHHHHHhcc
Q 006534 567 DFIHAVERSIAG 578 (641)
Q Consensus 567 d~~~Al~rvi~g 578 (641)
||..|+.+..+.
T Consensus 455 dl~~a~~~~~Pl 466 (489)
T CHL00195 455 DILLALKQFIPL 466 (489)
T ss_pred HHHHHHHhcCCC
Confidence 999999887753
No 27
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-39 Score=332.04 Aligned_cols=228 Identities=37% Similarity=0.625 Sum_probs=206.4
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhH
Q 006534 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~ 401 (641)
..+.|+|.|+||+|++.+|+.|+|.|-. ++.|+.|.. +..|-+|+||||||||||++||+|+|.|++-.|++|+.+++
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL 202 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHH
Confidence 3467899999999999999999998877 777776653 45677999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCC-CCcEEEEEecCC
Q 006534 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIVLGATNR 480 (641)
Q Consensus 402 v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~-~~~ViVIaATN~ 480 (641)
+++|+|++++.++.+|+.|+.+.|+||||||||.++..|.+ +.++..+++..+||.+|+|... +.+|+|++|||-
T Consensus 203 vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e----nEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNi 278 (439)
T KOG0739|consen 203 VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE----NESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNI 278 (439)
T ss_pred HHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC----CchHHHHHHHHHHHHhhhccccCCCceEEEecCCC
Confidence 99999999999999999999999999999999999988864 4566778899999999999854 568999999999
Q ss_pred CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 006534 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (641)
Q Consensus 481 pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~ 558 (641)
|+.||.|++| ||++.|++|+|+...|..+++.|+......+.+ .|+.+|+++|+||||+||.-+|+.|.+.-.|.
T Consensus 279 Pw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~-~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 279 PWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTE-QDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred chhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccch-hhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 9999999999 999999999999999999999999876655654 48999999999999999999999998877653
No 28
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.2e-37 Score=335.70 Aligned_cols=249 Identities=50% Similarity=0.779 Sum_probs=229.0
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v 402 (641)
.+.|.++|+||+|++++++++.+.+.. +.+|+.|..+|..+|+|+||+||||||||++|+++|++++.+|+.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 356789999999999999999999887 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC
Q 006534 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd 482 (641)
..+.|.+...++.+|+.++...||||||||+|.++..+.... .++..+..+++.+++.+++++....++.||+|||+++
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~-~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSG-TSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPD 272 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCC-CCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 999999999999999999999999999999999987765332 2234566778899999999988778999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 006534 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (641)
Q Consensus 483 ~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~ 562 (641)
.+|++++||||||+.|+++.|+.++|.+|++.++.+ ..+..++++..++..+.||+|+||.++|++|+..|.++++..
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~--~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~ 350 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRK--MKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDY 350 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhc--CCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999865 456677899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHH
Q 006534 563 VEKIDFIHAVERS 575 (641)
Q Consensus 563 It~~d~~~Al~rv 575 (641)
|+.+||.+|++++
T Consensus 351 i~~~d~~~a~~~~ 363 (364)
T TIGR01242 351 VTMDDFIKAVEKV 363 (364)
T ss_pred cCHHHHHHHHHHh
Confidence 9999999999876
No 29
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-38 Score=328.66 Aligned_cols=228 Identities=41% Similarity=0.630 Sum_probs=209.1
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhC-CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhh
Q 006534 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLG-ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg-~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se 400 (641)
.+..-.++|+||.|+++++++|++.|.. ++.|+.|...+ .++|+|||||||||||||++|+|+|.++|.+|+.++.+.
T Consensus 83 ~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~ 162 (386)
T KOG0737|consen 83 PPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSN 162 (386)
T ss_pred chhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccc
Confidence 4455679999999999999999999888 88998886333 468999999999999999999999999999999999999
Q ss_pred HHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCc--EEEEEec
Q 006534 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA--VIVLGAT 478 (641)
Q Consensus 401 ~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~--ViVIaAT 478 (641)
+.++|.|++++.++.+|..|.+..||||||||+|.+.+.|+ ...++.....-++|....||+.++.+ |+|+|||
T Consensus 163 lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~----s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgAT 238 (386)
T KOG0737|consen 163 LTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR----STDHEATAMMKNEFMALWDGLSSKDSERVLVLGAT 238 (386)
T ss_pred cchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc----cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCC
Confidence 99999999999999999999999999999999999998884 34667777888999999999988765 9999999
Q ss_pred CCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 006534 479 NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (641)
Q Consensus 479 N~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~ 558 (641)
|+|..||.|++| |+.++++|+.|+..+|.+||+..++.. ++++++|+.++|..|.||||.||.++|..|+....++
T Consensus 239 NRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e--~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 239 NRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKE--KLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred CCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhccc--ccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 999999999999 999999999999999999999999765 5679999999999999999999999999999887663
No 30
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-38 Score=323.51 Aligned_cols=250 Identities=42% Similarity=0.664 Sum_probs=234.1
Q ss_pred CCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006534 325 QGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 325 ~~~~vtf~DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~ 403 (641)
+...++|+++.|.-+...++++.++. +.+|..|.++|.++|++++||||||||||++|+++|..+|++|+.+..+++++
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 34568999999999999999999888 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCC
Q 006534 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (641)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~ 483 (641)
.|.|++++.+|+.|..|+...|||||+||||++++.+. ......+.+..++|-.|+.+|++++....|-+|+|||+|+.
T Consensus 205 kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~-se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdt 283 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRF-SEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDT 283 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEe-ccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccc
Confidence 99999999999999999999999999999999998884 33466788999999999999999999999999999999999
Q ss_pred CChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccc
Q 006534 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (641)
Q Consensus 484 LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~I 563 (641)
|||+|+||||+|+.+++|+|+...|..|++.|... +....++|.+.+.+..+||.|+|+.+.|.||...|.+..+..+
T Consensus 284 LdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~--i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~v 361 (388)
T KOG0651|consen 284 LDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQP--IDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEV 361 (388)
T ss_pred cchhhcCCccccceeccCCcchhhceeeEeecccc--ccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHH
Confidence 99999999999999999999999999999999754 4555678899999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhc
Q 006534 564 EKIDFIHAVERSIA 577 (641)
Q Consensus 564 t~~d~~~Al~rvi~ 577 (641)
-++|+..++.++-.
T Consensus 362 l~Ed~~k~vrk~~~ 375 (388)
T KOG0651|consen 362 LHEDFMKLVRKQAD 375 (388)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999987753
No 31
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=1.6e-35 Score=329.18 Aligned_cols=254 Identities=35% Similarity=0.588 Sum_probs=207.7
Q ss_pred cccCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC--------
Q 006534 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------- 392 (641)
Q Consensus 322 ~~~~~~~vtf~DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p-------- 392 (641)
+.++.|.++|+||+|++++++++++.+.. +.+|+.|...|.++|+|+|||||||||||++|+++|++++.+
T Consensus 172 ~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~ 251 (512)
T TIGR03689 172 VLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDK 251 (512)
T ss_pred eeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCc
Confidence 34667899999999999999999998887 889999999999999999999999999999999999998654
Q ss_pred --eEEeehhhHHHHHhhcchHHHHHHHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC
Q 006534 393 --FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 466 (641)
Q Consensus 393 --fi~vs~se~v~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~ 466 (641)
|+.+.++++.++|+|+++..++.+|+.|+.. .||||||||+|.++..++.+ .+++....++++||.+||++
T Consensus 252 ~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~---~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 252 SYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG---VSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred eeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC---ccchHHHHHHHHHHHHhccc
Confidence 6778888999999999999999999998864 69999999999999877532 23444467889999999999
Q ss_pred CCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCC---------CCHHHHHH---
Q 006534 467 DSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD---------IDLGDIAS--- 534 (641)
Q Consensus 467 ~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~d---------vdl~~LA~--- 534 (641)
....+++||+|||+++.||||++||||||..|+|++|+.++|.+||+.++.. .+++.++ .++..+++
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~~~l~~~~g~~~a~~~al~~~av 407 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLDADLAEFDGDREATAAALIQRAV 407 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCchHHHHHhcCCCHHHHHHHHHHHH
Confidence 9888999999999999999999999999999999999999999999999864 2344211 11222211
Q ss_pred --------------------------hCCCCCHHHHHHHHHHHHHHHHhc----CCccccHHHHHHHHHHHhcch
Q 006534 535 --------------------------MTTGFTGADLANLVNEAALLAGRL----NKVVVEKIDFIHAVERSIAGI 579 (641)
Q Consensus 535 --------------------------~t~GfSgaDL~~Lv~eAa~~A~r~----~~~~It~~d~~~Al~rvi~g~ 579 (641)
.++.+||++|+++|.+|...|.++ +...|+.+|+..|+..-...-
T Consensus 408 ~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~ 482 (512)
T TIGR03689 408 DHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRES 482 (512)
T ss_pred HHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhccc
Confidence 144567777777777777666644 345677777777776665443
No 32
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-34 Score=306.63 Aligned_cols=251 Identities=34% Similarity=0.566 Sum_probs=215.2
Q ss_pred CCcccccc--ccCChHHHHHHHH--HHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCC-CeEEeehhh
Q 006534 326 GDTITFAD--VAGVDEAKEELEE--IVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-PFISCSASE 400 (641)
Q Consensus 326 ~~~vtf~D--V~G~~e~K~~L~e--iv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~-pfi~vs~se 400 (641)
.|...|++ |.|++..-..+-+ ++..+-.|+.-.++|.+.-+|+|||||||||||++||.|...++. +--.|++.+
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 46677777 5688877665532 444477888889999999999999999999999999999998863 445689999
Q ss_pred HHHHHhhcchHHHHHHHHHHHhc--------CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcE
Q 006534 401 FVELYVGMGASRVRDLFARAKKE--------APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 472 (641)
Q Consensus 401 ~v~~~vG~~~~~vr~lF~~A~~~--------aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~V 472 (641)
.+++|+|+++.++|++|..|... .=-||++||||+++++|+.. .++...-.+++||||.-|||.+.-.+|
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~--~g~TGVhD~VVNQLLsKmDGVeqLNNI 370 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSM--AGSTGVHDTVVNQLLSKMDGVEQLNNI 370 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCC--CCCCCccHHHHHHHHHhcccHHhhhcE
Confidence 99999999999999999998542 11299999999999999764 233455678999999999999999999
Q ss_pred EEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC--CCCCCCCCCHHHHHHhCCCCCHHHHHHHHHH
Q 006534 473 IVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (641)
Q Consensus 473 iVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~--~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~e 550 (641)
+||+-|||.|.||+||+|||||.-++++.+||.+.|.+|++.|..+. +-.+.+|||+.+||.+|-.|||++|+.+++.
T Consensus 371 LVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVks 450 (744)
T KOG0741|consen 371 LVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKS 450 (744)
T ss_pred EEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999998653 3357899999999999999999999999999
Q ss_pred HHHHHHhc---------------CCccccHHHHHHHHHHHhcc
Q 006534 551 AALLAGRL---------------NKVVVEKIDFIHAVERSIAG 578 (641)
Q Consensus 551 Aa~~A~r~---------------~~~~It~~d~~~Al~rvi~g 578 (641)
|...|..+ ..-.|+.+||..|++.+.+.
T Consensus 451 A~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPA 493 (744)
T KOG0741|consen 451 AQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPA 493 (744)
T ss_pred HHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcc
Confidence 99888654 23468999999999987654
No 33
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-33 Score=327.01 Aligned_cols=251 Identities=40% Similarity=0.645 Sum_probs=226.1
Q ss_pred CCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEeehh
Q 006534 326 GDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSAS 399 (641)
Q Consensus 326 ~~~vtf~DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el-----g~pfi~vs~s 399 (641)
...++|++|+|++.++.+|+|+|.+ |..|+.|..++..+|+|||++||||||||+.|+|+|..+ .+-|+.-.++
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 4578999999999999999999999 899999999999999999999999999999999999987 4778888999
Q ss_pred hHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006534 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 400 e~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN 479 (641)
+..++|+|+.+..++.+|+.|++..|+|||+||||.|++.|.. ...+....++..||..|||+.+.+.|+||+|||
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSs----kqEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSS----KQEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccc----hHHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 9999999999999999999999999999999999999998853 245566788999999999999999999999999
Q ss_pred CCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC
Q 006534 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (641)
Q Consensus 480 ~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~ 559 (641)
||+.+||||+||||||+.+++++|+.+.|.+|+..|..+..-++... -+..+|+.|.||-|+||+.+|.+|++.+.++.
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~-l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~ 493 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRE-LLLWLAEETSGYGGADLKALCTEAALIALRRS 493 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHH-HHHHHHHhccccchHHHHHHHHHHhhhhhccc
Confidence 99999999999999999999999999999999999998765444333 47889999999999999999999999998752
Q ss_pred ----------------CccccHHHHHHHHHHHhcchhh
Q 006534 560 ----------------KVVVEKIDFIHAVERSIAGIEK 581 (641)
Q Consensus 560 ----------------~~~It~~d~~~Al~rvi~g~~~ 581 (641)
...|...||..|+.+......+
T Consensus 494 ~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 494 FPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred cCeeecccccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 2347788999999887765444
No 34
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-33 Score=307.03 Aligned_cols=238 Identities=44% Similarity=0.663 Sum_probs=221.3
Q ss_pred CccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHH
Q 006534 327 DTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (641)
Q Consensus 327 ~~vtf~DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~ 405 (641)
+.++ +++.|.......+++++.+ +.+|..|...|.++|+|+|+|||||||||.+++++|++.++.++.+++++++..+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 6677 8999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHhcC-CceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCC
Q 006534 406 VGMGASRVRDLFARAKKEA-PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (641)
Q Consensus 406 vG~~~~~vr~lF~~A~~~a-P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~L 484 (641)
.|++++.+|..|++|.+.+ |+||||||||++++++... ++...++..+|++.||+..+..+++||++||+|+.|
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~-----~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sl 333 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGA-----DDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSL 333 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCccccc-----chHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcccc
Confidence 9999999999999999999 9999999999999988642 224578899999999999999999999999999999
Q ss_pred ChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccc
Q 006534 485 DPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVE 564 (641)
Q Consensus 485 DpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It 564 (641)
|++++| ||||+.+.+..|+..+|.+|++.+.++.+ +.+++++..+|..|.||.|+||..+|.+|...+.++ +
T Consensus 334 d~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~--~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~ 405 (693)
T KOG0730|consen 334 DPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMN--LLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----T 405 (693)
T ss_pred Chhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcC--CcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----h
Confidence 999999 99999999999999999999999997754 447789999999999999999999999999999887 7
Q ss_pred HHHHHHHHHHHhcc
Q 006534 565 KIDFIHAVERSIAG 578 (641)
Q Consensus 565 ~~d~~~Al~rvi~g 578 (641)
+++|..|...+...
T Consensus 406 ~~~~~~A~~~i~ps 419 (693)
T KOG0730|consen 406 LEIFQEALMGIRPS 419 (693)
T ss_pred HHHHHHHHhcCCch
Confidence 88888888765543
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=4.2e-32 Score=316.75 Aligned_cols=247 Identities=49% Similarity=0.798 Sum_probs=222.0
Q ss_pred CCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH
Q 006534 326 GDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (641)
Q Consensus 326 ~~~vtf~DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~ 404 (641)
.+.++|+||+|++++++.+++++.. +++|+.|..+|..+|+++|||||||||||+||+++|++++.+|+.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4679999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCC
Q 006534 405 YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (641)
Q Consensus 405 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~L 484 (641)
+.|.++..++.+|+.|....|+||||||||.+..+++.. ..+...+++++|+..|+++.....++||++||+++.|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~----~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~l 327 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV----TGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDAL 327 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC----cchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhc
Confidence 999999999999999999999999999999999877532 2233356889999999999888899999999999999
Q ss_pred ChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC-----
Q 006534 485 DPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN----- 559 (641)
Q Consensus 485 DpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~----- 559 (641)
|++++|+|||++.+.++.|+.++|.+||+.+.+. .++.++++++.+++.+.||+++|+..++++|+..+.++.
T Consensus 328 d~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~--~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~ 405 (733)
T TIGR01243 328 DPALRRPGRFDREIVIRVPDKRARKEILKVHTRN--MPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGK 405 (733)
T ss_pred CHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC--CCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999988754 566778899999999999999999999999998876531
Q ss_pred --------------CccccHHHHHHHHHHHhcc
Q 006534 560 --------------KVVVEKIDFIHAVERSIAG 578 (641)
Q Consensus 560 --------------~~~It~~d~~~Al~rvi~g 578 (641)
...++.+||..|+..+...
T Consensus 406 ~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps 438 (733)
T TIGR01243 406 INFEAEEIPAEVLKELKVTMKDFMEALKMVEPS 438 (733)
T ss_pred cccccccccchhcccccccHHHHHHHHhhcccc
Confidence 1357889999998866543
No 36
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=6e-32 Score=286.40 Aligned_cols=261 Identities=17% Similarity=0.175 Sum_probs=196.6
Q ss_pred Cccccccc-cCChHHHHHHHHHHHHh-cChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH
Q 006534 327 DTITFADV-AGVDEAKEELEEIVEFL-RSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (641)
Q Consensus 327 ~~vtf~DV-~G~~e~K~~L~eiv~~L-~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~ 404 (641)
...+|+++ .|+.-.+.-+.+++..+ ++. ....|.++|++++||||||||||++|+++|+++|++|+.++++++.++
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~--l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNF--LALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhh--hhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 34567777 66666666666555432 221 123678999999999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHHHHh-----cCCceEEEcchhhhhhhcCCcccccchhHHHHHH-HHHHhhhcCC------------
Q 006534 405 YVGMGASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL-NQLLTEMDGF------------ 466 (641)
Q Consensus 405 ~vG~~~~~vr~lF~~A~~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L-nqLL~emdg~------------ 466 (641)
|+|++++.+|++|..|.. .+||||||||||++++.++.. ......+.+ .+|+++||+.
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~----~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~ 263 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT----QYTVNNQMVNGTLMNIADNPTNVSLGGDWREK 263 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC----CcchHHHHHHHHHHHHhcCCcccccccccccc
Confidence 999999999999999975 469999999999999887532 222233444 7888888752
Q ss_pred CCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCC----CCHH
Q 006534 467 DSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG----FTGA 542 (641)
Q Consensus 467 ~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~G----fSga 542 (641)
+...+|+||+|||+|+.|||+|+||||||+.+ ..|+.++|.+||+.++++.++ + ..++..|+..++| |.|+
T Consensus 264 ~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l--~-~~dv~~Lv~~f~gq~~Df~GA 338 (413)
T PLN00020 264 EEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGV--S-REDVVKLVDTFPGQPLDFFGA 338 (413)
T ss_pred ccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCC--C-HHHHHHHHHcCCCCCchhhhH
Confidence 34567999999999999999999999999864 589999999999999987544 3 4678888888877 5666
Q ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcchhhhhccCChhHHHHHHHHHHHHHHHHh
Q 006534 543 DLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGT 606 (641)
Q Consensus 543 DL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~rvi~g~~~~~~~ls~~ek~~va~hEaghAlv~~ 606 (641)
--..+..++...-+.+- ..+.+- .+.+...+ ....+......+-.+-|+||.++..
T Consensus 339 lrar~yd~~v~~~i~~~----g~~~~~---~~l~~~~~-~~p~f~~~~~t~~~l~~~g~~l~~e 394 (413)
T PLN00020 339 LRARVYDDEVRKWIAEV----GVENLG---KKLVNSKK-GPPTFEPPKMTLEKLLEYGNMLVRE 394 (413)
T ss_pred HHHHHHHHHHHHHHHHh----hHHHHH---HHHhcCCC-CCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 66777777665443221 122222 22222222 2344555566677888999999875
No 37
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.6e-31 Score=287.08 Aligned_cols=248 Identities=36% Similarity=0.551 Sum_probs=212.4
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhH
Q 006534 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~ 401 (641)
....+.+.|+|++|++.+|+.+.+.+.+ +..|..|..+ ..+++|+||.||||||||+|++|||.|++..|+.++++.+
T Consensus 144 ~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassL 222 (428)
T KOG0740|consen 144 GDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSL 222 (428)
T ss_pred hccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHh
Confidence 3445679999999999999999999999 5568777654 4567899999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCC--CCcEEEEEecC
Q 006534 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS--NSAVIVLGATN 479 (641)
Q Consensus 402 v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~--~~~ViVIaATN 479 (641)
.++|+|++++.++.+|.-|+...|+|+||||+|.+..+|.+ ..++...+...++|..+++... ++.|+||+|||
T Consensus 223 tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~----~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN 298 (428)
T KOG0740|consen 223 TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD----NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATN 298 (428)
T ss_pred hhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC----cccccchhhhhHHHhhhccccCCCCCeEEEEecCC
Confidence 99999999999999999999999999999999999988853 3455556777888888887643 45899999999
Q ss_pred CCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC
Q 006534 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (641)
Q Consensus 480 ~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~ 559 (641)
+|+.+|.+++| ||.+.+++++||.+.|..+|+..+.+.+..+ .+.+++.|++.|+||++.||.++|.+|++.-.+..
T Consensus 299 ~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l-~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~ 375 (428)
T KOG0740|consen 299 RPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGL-SDLDISLLAKVTEGYSGSDITALCKEAAMGPLREL 375 (428)
T ss_pred CchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhc
Confidence 99999999999 9999999999999999999999998764444 34589999999999999999999999986443322
Q ss_pred -------------CccccHHHHHHHHHHHhcc
Q 006534 560 -------------KVVVEKIDFIHAVERSIAG 578 (641)
Q Consensus 560 -------------~~~It~~d~~~Al~rvi~g 578 (641)
...|+..||..|+..+...
T Consensus 376 ~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~ 407 (428)
T KOG0740|consen 376 GGTTDLEFIDADKIRPITYPDFKNAFKNIKPS 407 (428)
T ss_pred ccchhhhhcchhccCCCCcchHHHHHHhhccc
Confidence 2345667788887766543
No 38
>CHL00181 cbbX CbbX; Provisional
Probab=99.90 E-value=3e-22 Score=209.96 Aligned_cols=212 Identities=20% Similarity=0.292 Sum_probs=165.3
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhhCCCCC---CeeEEEcCCCCcHHHHHHHHHHhc-------CCCeEEeehhh
Q 006534 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPP---RGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSASE 400 (641)
Q Consensus 331 f~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~p---kgVLL~GPPGTGKT~LAkAIA~el-------g~pfi~vs~se 400 (641)
+++++|++++|+++++++.++..+..+...|...| .++||+||||||||++|+++|.++ ..+++.+++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 34899999999999999998777777777786554 358999999999999999999875 24799999999
Q ss_pred HHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCC
Q 006534 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (641)
Q Consensus 401 ~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~ 480 (641)
++..++|.++..++.+|+.|. ++||||||+|.+...+. ..+.....++.|+..|+... .+++||++++.
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~------~~~~~~e~~~~L~~~me~~~--~~~~vI~ag~~ 170 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN------ERDYGSEAIEILLQVMENQR--DDLVVIFAGYK 170 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC------ccchHHHHHHHHHHHHhcCC--CCEEEEEeCCc
Confidence 999999998888888888764 35999999999965332 12223556778888887543 45788888764
Q ss_pred CC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh------CCCCC-HHHHHHHH
Q 006534 481 SD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM------TTGFT-GADLANLV 548 (641)
Q Consensus 481 pd-----~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~------t~GfS-gaDL~~Lv 548 (641)
.. .++|++.+ ||+..|.|++|+.+++.+|++.++.+.+..++++. ...+... .+.|. ++++++++
T Consensus 171 ~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~v 247 (287)
T CHL00181 171 DRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNAL 247 (287)
T ss_pred HHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 32 34699998 99999999999999999999999988777776653 3333321 23344 89999999
Q ss_pred HHHHHHHH
Q 006534 549 NEAALLAG 556 (641)
Q Consensus 549 ~eAa~~A~ 556 (641)
++|...-.
T Consensus 248 e~~~~~~~ 255 (287)
T CHL00181 248 DRARMRQA 255 (287)
T ss_pred HHHHHHHH
Confidence 99876543
No 39
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.89 E-value=4e-22 Score=205.78 Aligned_cols=212 Identities=21% Similarity=0.321 Sum_probs=163.2
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCC---CCeeEEEcCCCCcHHHHHHHHHHhc-------CCCeEEeehh
Q 006534 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARP---PRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSAS 399 (641)
Q Consensus 330 tf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~---pkgVLL~GPPGTGKT~LAkAIA~el-------g~pfi~vs~s 399 (641)
.+++++|++++|+++++++.+..........|... +.++||+||||||||++|+++|+++ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 36789999999999999999976655555566653 3568999999999999999999864 3478999999
Q ss_pred hHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006534 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 400 e~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN 479 (641)
++...++|.....++++|+.|. ++||||||+|.|.... ..+.....++.|+..|+... ..+++|+++.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~-------~~~~~~~~i~~Ll~~~e~~~--~~~~vila~~ 151 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG-------EKDFGKEAIDTLVKGMEDNR--NEFVLILAGY 151 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC-------ccchHHHHHHHHHHHHhccC--CCEEEEecCC
Confidence 9999999999999999998874 4699999999996421 11223456788888888653 4466666654
Q ss_pred CCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh---------CCCCCHHHHH
Q 006534 480 RSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM---------TTGFTGADLA 545 (641)
Q Consensus 480 ~pd-----~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~---------t~GfSgaDL~ 545 (641)
..+ .++|++.+ ||+..+.++.++.+++.+|++.++...+..+++++ +..++.. ...-+++.+.
T Consensus 152 ~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a-~~~l~~~~~~~~~~~~~~~gn~R~~~ 228 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEA-KWKLREHLYKVDQLSSREFSNARYVR 228 (261)
T ss_pred cchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHH-HHHHHHHHHHHHhccCCCCchHHHHH
Confidence 322 46889988 99999999999999999999999987766676664 4444321 1123778999
Q ss_pred HHHHHHHHHHH
Q 006534 546 NLVNEAALLAG 556 (641)
Q Consensus 546 ~Lv~eAa~~A~ 556 (641)
++++.|.....
T Consensus 229 n~~e~a~~~~~ 239 (261)
T TIGR02881 229 NIIEKAIRRQA 239 (261)
T ss_pred HHHHHHHHHHH
Confidence 99998876553
No 40
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=4.6e-22 Score=210.47 Aligned_cols=239 Identities=26% Similarity=0.368 Sum_probs=186.1
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHh
Q 006534 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (641)
Q Consensus 327 ~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~v 406 (641)
..-.|++|+-....+..++++...-.|.+. ...+-++||+|||||||||++|+-+|...|..+-.+.+.+...+ -
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-G 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-c
Confidence 344599999999999999998877555443 34566889999999999999999999999999998888876542 2
Q ss_pred hcchHHHHHHHHHHHhcCCc-eEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCC
Q 006534 407 GMGASRVRDLFARAKKEAPS-IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (641)
Q Consensus 407 G~~~~~vr~lF~~A~~~aP~-ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LD 485 (641)
..+...+.++|+.|++.... +|||||.|++.-.|.. ...++..+..||.||-.-- +....|+++.+||+|..+|
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk---tymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlD 499 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK---TYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLD 499 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch---hhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchh
Confidence 34567789999999876544 8999999999888764 3355667788999886532 3345789999999999999
Q ss_pred hhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCC----------------------CCCCCC---CHHHHHHhCCCCC
Q 006534 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKEL----------------------PLAKDI---DLGDIASMTTGFT 540 (641)
Q Consensus 486 pALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l----------------------~l~~dv---dl~~LA~~t~GfS 540 (641)
.++-. |||.+|+|++|..++|..+|..++.++-. .+..++ .+.+.|+.|+|||
T Consensus 500 sAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfS 577 (630)
T KOG0742|consen 500 SAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFS 577 (630)
T ss_pred HHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCc
Confidence 99998 99999999999999999999998876311 111111 2567789999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhc
Q 006534 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 541 gaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~rvi~ 577 (641)
|++|..|+---...++-.....++..-|++.++-.+.
T Consensus 578 GREiakLva~vQAavYgsedcvLd~~lf~e~v~ykv~ 614 (630)
T KOG0742|consen 578 GREIAKLVASVQAAVYGSEDCVLDEALFDERVDYKVQ 614 (630)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHH
Confidence 9999999876555555556667777777766655443
No 41
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.89 E-value=8.1e-22 Score=206.37 Aligned_cols=211 Identities=20% Similarity=0.303 Sum_probs=166.2
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCC---CCeeEEEcCCCCcHHHHHHHHHHhcC-------CCeEEeehhhHH
Q 006534 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARP---PRGVLLVGLPGTGKTLLAKAVAGEAE-------VPFISCSASEFV 402 (641)
Q Consensus 333 DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~---pkgVLL~GPPGTGKT~LAkAIA~elg-------~pfi~vs~se~v 402 (641)
+++|++++|+++.+++.++..++.+.+.|... ..++||+||||||||++|+++|..+. .+|+.+++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 69999999999999999988888888888764 34899999999999999999988762 379999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC-
Q 006534 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS- 481 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~p- 481 (641)
..+.|.++..++++|++|. +++|||||+|.|.+.++. .+......+.|+..|+.. ..+++||++++..
T Consensus 103 ~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~------~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE------RDYGQEAIEILLQVMENQ--RDDLVVILAGYKDR 171 (284)
T ss_pred HhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc------cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHH
Confidence 9999998888899998874 369999999999643321 122345667788888743 3567888887643
Q ss_pred -C---CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh-------CCCCCHHHHHHHHHH
Q 006534 482 -D---VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM-------TTGFTGADLANLVNE 550 (641)
Q Consensus 482 -d---~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~-------t~GfSgaDL~~Lv~e 550 (641)
+ .++|++.+ ||+..|.|++++.+++.+|++.++.+.+..+.++. +..++.+ ..--++++++++++.
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a-~~~L~~~l~~~~~~~~~GN~R~lrn~ve~ 248 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEA-EEAFADYIALRRTQPHFANARSIRNAIDR 248 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHH-HHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 2 35899999 99999999999999999999999988665565543 4444443 222368999999999
Q ss_pred HHHHHHh
Q 006534 551 AALLAGR 557 (641)
Q Consensus 551 Aa~~A~r 557 (641)
|......
T Consensus 249 ~~~~~~~ 255 (284)
T TIGR02880 249 ARLRQAN 255 (284)
T ss_pred HHHHHHH
Confidence 8765543
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.87 E-value=8.6e-22 Score=179.29 Aligned_cols=130 Identities=45% Similarity=0.671 Sum_probs=117.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcC-CceEEEcchhhhhhhcCCcccc
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEA-PSIIFIDEIDAVAKSRDGRFRI 446 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~vG~~~~~vr~lF~~A~~~a-P~ILfIDEIDaL~~~r~~~~~~ 446 (641)
|||+||||||||++|+++|+.++.+++.++++++.+.+.+.....++++|.+++... ||||||||+|.+....+ .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~----~ 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ----P 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS----T
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc----c
Confidence 699999999999999999999999999999999998888999999999999999888 99999999999988762 2
Q ss_pred cchhHHHHHHHHHHhhhcCCCCC-CcEEEEEecCCCCCCChhhhCCCCcceEEEecC
Q 006534 447 VSNDEREQTLNQLLTEMDGFDSN-SAVIVLGATNRSDVLDPALRRPGRFDRVVMVET 502 (641)
Q Consensus 447 ~~~~e~~~~LnqLL~emdg~~~~-~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~ 502 (641)
.........+++|+..++..... .+++||++||.++.++++++| +||+..+++++
T Consensus 77 ~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 77 SSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 34566678889999999988765 569999999999999999998 89999999874
No 43
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.9e-21 Score=208.33 Aligned_cols=207 Identities=29% Similarity=0.381 Sum_probs=161.6
Q ss_pred ccccccccCChHHHHHHH-HHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHh
Q 006534 328 TITFADVAGVDEAKEELE-EIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (641)
Q Consensus 328 ~vtf~DV~G~~e~K~~L~-eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~v 406 (641)
+.+|+.|+-..+.|+++. ++.+|.+..+-|.+.|....+|.|||||||||||+++.|+|++++..++-++.++..
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~---- 272 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK---- 272 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc----
Confidence 379999999999998885 577779999999999999999999999999999999999999999999888775542
Q ss_pred hcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccc--cch-hHHHHHHHHHHhhhcCCCCCC--cEEEEEecCCC
Q 006534 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI--VSN-DEREQTLNQLLTEMDGFDSNS--AVIVLGATNRS 481 (641)
Q Consensus 407 G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~--~~~-~e~~~~LnqLL~emdg~~~~~--~ViVIaATN~p 481 (641)
.... ++.++..+.. .+||+|.|||+-...+...... ... ....-++..||..+||.-+.. --|||.|||.+
T Consensus 273 -~n~d-Lr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 273 -LDSD-LRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred -CcHH-HHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 2223 7777765543 3699999999975433221110 011 123468999999999998766 57889999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCC-CCCCCCCCHHHHHHhCCC--CCHHHHHHH
Q 006534 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKE-LPLAKDIDLGDIASMTTG--FTGADLANL 547 (641)
Q Consensus 482 d~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~-l~l~~dvdl~~LA~~t~G--fSgaDL~~L 547 (641)
+.|||||+||||.|.+|+++..+..+-..+++.++.-.. .++ ..++.+...+ .||||+...
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L-----~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRL-----FDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcch-----hHHHHHHhhcCccCHHHHHHH
Confidence 999999999999999999999999999999999985432 222 3444443333 589988543
No 44
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.84 E-value=1.3e-19 Score=190.09 Aligned_cols=211 Identities=23% Similarity=0.320 Sum_probs=159.2
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcc
Q 006534 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMG 409 (641)
Q Consensus 330 tf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~vG~~ 409 (641)
+|+|++|+++++++|..++..... ....+.+++|+||||||||+||+++|++++.++..+.++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~-------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM-------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 699999999999999888864332 1245678999999999999999999999998887766543211
Q ss_pred hHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC----------------CCCcEE
Q 006534 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----------------SNSAVI 473 (641)
Q Consensus 410 ~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~----------------~~~~Vi 473 (641)
...+...+... ..+.+|||||+|.+....+ +.|+..|+... ...++.
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~~---------------e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPAVE---------------ELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHHHH---------------HHhhHHHhhhheeeeeccCccccceeecCCCeE
Confidence 12222333322 3467999999999864321 11222222111 123488
Q ss_pred EEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q 006534 474 VLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (641)
Q Consensus 474 VIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~ 553 (641)
+|++||++..+++++++ ||...+.+++|+.+++.++++..+...++.+++++ ++.+++.+.| .++.+.++++.+..
T Consensus 132 li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~a-l~~ia~~~~G-~pR~~~~ll~~~~~ 207 (305)
T TIGR00635 132 LVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEA-ALEIARRSRG-TPRIANRLLRRVRD 207 (305)
T ss_pred EEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHH-HHHHHHHhCC-CcchHHHHHHHHHH
Confidence 99999999999999988 99888999999999999999999887777776653 7889999888 56888999998887
Q ss_pred HHHhcCCccccHHHHHHHHHH
Q 006534 554 LAGRLNKVVVEKIDFIHAVER 574 (641)
Q Consensus 554 ~A~r~~~~~It~~d~~~Al~r 574 (641)
.|...+...|+.+++..++..
T Consensus 208 ~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 208 FAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHHHcCCCCcCHHHHHHHHHH
Confidence 776666677999999999887
No 45
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.84 E-value=1e-19 Score=193.86 Aligned_cols=219 Identities=23% Similarity=0.258 Sum_probs=166.0
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHH
Q 006534 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (641)
Q Consensus 326 ~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~ 405 (641)
..+.+|+|++|+++.++.|..++...+.+ ..++.++||+||||||||++|+++|++++..+..+++..+.
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~--- 88 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE--- 88 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc---
Confidence 34568999999999999999888754332 34577899999999999999999999999988877665331
Q ss_pred hhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhh------cC-CC------CCCcE
Q 006534 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM------DG-FD------SNSAV 472 (641)
Q Consensus 406 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~em------dg-~~------~~~~V 472 (641)
....+..++... ..++||||||||.+....+ +.+..++... +. .. .-.++
T Consensus 89 ---~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~~------------e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~ 151 (328)
T PRK00080 89 ---KPGDLAAILTNL--EEGDVLFIDEIHRLSPVVE------------EILYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred ---ChHHHHHHHHhc--ccCCEEEEecHhhcchHHH------------HHHHHHHHhcceeeeeccCccccceeecCCCc
Confidence 122334444432 3467999999999853221 1222222211 10 00 11347
Q ss_pred EEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHH
Q 006534 473 IVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAA 552 (641)
Q Consensus 473 iVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa 552 (641)
.+|++||++..++++|.+ ||+..+.++.|+.+++.+|++..+...++.+++++ +..|+..+.| +++.+.++++.+.
T Consensus 152 ~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~-~~~ia~~~~G-~pR~a~~~l~~~~ 227 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEG-ALEIARRSRG-TPRIANRLLRRVR 227 (328)
T ss_pred eEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHH-HHHHHHHcCC-CchHHHHHHHHHH
Confidence 889999999999999988 99989999999999999999999988888877664 8889999987 6699999999988
Q ss_pred HHHHhcCCccccHHHHHHHHHHH
Q 006534 553 LLAGRLNKVVVEKIDFIHAVERS 575 (641)
Q Consensus 553 ~~A~r~~~~~It~~d~~~Al~rv 575 (641)
..|...+...|+.+++..+++..
T Consensus 228 ~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 228 DFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHh
Confidence 88876666789999999998653
No 46
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.83 E-value=2.7e-20 Score=186.89 Aligned_cols=197 Identities=25% Similarity=0.352 Sum_probs=136.1
Q ss_pred cccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhH
Q 006534 322 VSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (641)
Q Consensus 322 ~~~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~ 401 (641)
..+...+.+|+|++|++++++.++-+++..+.. .....++|||||||+|||+||+.+|++++++|...++..+
T Consensus 14 l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i 86 (233)
T PF05496_consen 14 LAERLRPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAI 86 (233)
T ss_dssp HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC-
T ss_pred hHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhh
Confidence 344556779999999999999998888764331 2345689999999999999999999999999999888543
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC--------C-----
Q 006534 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------S----- 468 (641)
Q Consensus 402 v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~--------~----- 468 (641)
. ....+..++.... ...||||||||.+.+..+ ..|+..|+.+. .
T Consensus 87 ~------k~~dl~~il~~l~--~~~ILFIDEIHRlnk~~q---------------e~LlpamEd~~idiiiG~g~~ar~~ 143 (233)
T PF05496_consen 87 E------KAGDLAAILTNLK--EGDILFIDEIHRLNKAQQ---------------EILLPAMEDGKIDIIIGKGPNARSI 143 (233)
T ss_dssp -------SCHHHHHHHHT----TT-EEEECTCCC--HHHH---------------HHHHHHHHCSEEEEEBSSSSS-BEE
T ss_pred h------hHHHHHHHHHhcC--CCcEEEEechhhccHHHH---------------HHHHHHhccCeEEEEecccccccee
Confidence 1 1233344444332 346999999999976543 34555555431 1
Q ss_pred ---CCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHH
Q 006534 469 ---NSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLA 545 (641)
Q Consensus 469 ---~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~ 545 (641)
-.++.+|+||++...|.+.|+. ||.....+..++.++..+|++......+++++++. ..+||.++.| +++-..
T Consensus 144 ~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~-~~~Ia~rsrG-tPRiAn 219 (233)
T PF05496_consen 144 RINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDA-AEEIARRSRG-TPRIAN 219 (233)
T ss_dssp EEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHH-HHHHHHCTTT-SHHHHH
T ss_pred eccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHH-HHHHHHhcCC-ChHHHH
Confidence 1358899999999999999988 99988899999999999999998887778777663 7889999988 889888
Q ss_pred HHHHHHH
Q 006534 546 NLVNEAA 552 (641)
Q Consensus 546 ~Lv~eAa 552 (641)
++++++.
T Consensus 220 rll~rvr 226 (233)
T PF05496_consen 220 RLLRRVR 226 (233)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 8887654
No 47
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.7e-19 Score=186.97 Aligned_cols=242 Identities=23% Similarity=0.283 Sum_probs=178.6
Q ss_pred cccccCChHHHHHHHHHHHH-hcChhHHhhh-CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---------CCCeEEeehh
Q 006534 331 FADVAGVDEAKEELEEIVEF-LRSPDKYIRL-GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSAS 399 (641)
Q Consensus 331 f~DV~G~~e~K~~L~eiv~~-L~~p~~~~~l-g~~~pkgVLL~GPPGTGKT~LAkAIA~el---------g~pfi~vs~s 399 (641)
|+.++=-...|++|...+.. +...++-..- -....+-+||+||||||||+|+||+|+.+ ...++.+++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 66677677788877765544 3222221110 02234669999999999999999999987 3467899999
Q ss_pred hHHHHHhhcchHHHHHHHHHHHhcC---Cc--eEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEE
Q 006534 400 EFVELYVGMGASRVRDLFARAKKEA---PS--IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (641)
Q Consensus 400 e~v~~~vG~~~~~vr~lF~~A~~~a---P~--ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViV 474 (641)
.+.++|.+++.+.+..+|++..... .+ .|+|||+++|+..|............-+++|.+|++||.+....+|++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 9999999999999999999886532 23 556999999998885433333344556899999999999999999999
Q ss_pred EEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc---CCCCCCCC-------------CCHHHHHH-hCC
Q 006534 475 LGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK---KELPLAKD-------------IDLGDIAS-MTT 537 (641)
Q Consensus 475 IaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~---~~l~l~~d-------------vdl~~LA~-~t~ 537 (641)
++|+|-.+.||.|+.. |-|-+.++.+|+...+.+|++..+.+ .++-+... .....++. .+.
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~ 378 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTV 378 (423)
T ss_pred EeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhc
Confidence 9999999999999999 99999999999999999999987754 12211111 11222333 358
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHh
Q 006534 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (641)
Q Consensus 538 GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~rvi 576 (641)
|.||+-|+.+=--|...- -....|+.++|..|+-...
T Consensus 379 gLSGRtlrkLP~Laha~y--~~~~~v~~~~fl~al~ea~ 415 (423)
T KOG0744|consen 379 GLSGRTLRKLPLLAHAEY--FRTFTVDLSNFLLALLEAA 415 (423)
T ss_pred CCccchHhhhhHHHHHhc--cCCCccChHHHHHHHHHHH
Confidence 999999988865554332 2335788888888775543
No 48
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.80 E-value=2.4e-18 Score=183.35 Aligned_cols=211 Identities=30% Similarity=0.428 Sum_probs=151.6
Q ss_pred ccCCCccccccccCChHHH---HHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehh
Q 006534 323 SEQGDTITFADVAGVDEAK---EELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~~e~K---~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~s 399 (641)
.....+-+++|++|+++.. .-|.++++ .....+++||||||||||+||+.||+..+.+|..+++
T Consensus 15 A~rmRP~~lde~vGQ~HLlg~~~~lrr~v~------------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA- 81 (436)
T COG2256 15 AERLRPKSLDEVVGQEHLLGEGKPLRRAVE------------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA- 81 (436)
T ss_pred HHHhCCCCHHHhcChHhhhCCCchHHHHHh------------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecc-
Confidence 3444677899999999876 33444443 2334579999999999999999999999999999987
Q ss_pred hHHHHHhhcchHHHHHHHHHHHhcC----CceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEE
Q 006534 400 EFVELYVGMGASRVRDLFARAKKEA----PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVL 475 (641)
Q Consensus 400 e~v~~~vG~~~~~vr~lF~~A~~~a----P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVI 475 (641)
+-.+.+.++++++.|+... ..||||||||.+.+.+| ..||-.|+ +..|++|
T Consensus 82 ------v~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ---------------D~lLp~vE----~G~iilI 136 (436)
T COG2256 82 ------VTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ---------------DALLPHVE----NGTIILI 136 (436)
T ss_pred ------ccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh---------------hhhhhhhc----CCeEEEE
Confidence 3456788999999996532 46999999999987765 34666665 6678899
Q ss_pred Eec--CCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc--CCCC-----CCCCCCHHHHHHhCCCCCHHHHHH
Q 006534 476 GAT--NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK--KELP-----LAKDIDLGDIASMTTGFTGADLAN 546 (641)
Q Consensus 476 aAT--N~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~--~~l~-----l~~dvdl~~LA~~t~GfSgaDL~~ 546 (641)
+|| |+.-.|.+||+++.| ++++.+.+.++...+++..+.. +++. ++++ .++.++..+.| ..+-+-|
T Consensus 137 GATTENPsF~ln~ALlSR~~---vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~-a~~~l~~~s~G-D~R~aLN 211 (436)
T COG2256 137 GATTENPSFELNPALLSRAR---VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEE-ALDYLVRLSNG-DARRALN 211 (436)
T ss_pred eccCCCCCeeecHHHhhhhh---eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHH-HHHHHHHhcCc-hHHHHHH
Confidence 887 666799999999433 7889999999999999985433 3333 2232 35667777766 4444445
Q ss_pred HHHHHHHHHHhcCCccccHHHHHHHHHHHhcc
Q 006534 547 LVNEAALLAGRLNKVVVEKIDFIHAVERSIAG 578 (641)
Q Consensus 547 Lv~eAa~~A~r~~~~~It~~d~~~Al~rvi~g 578 (641)
+++.+...+ +.++ .+..+++.+.+.+....
T Consensus 212 ~LE~~~~~~-~~~~-~~~~~~l~~~l~~~~~~ 241 (436)
T COG2256 212 LLELAALSA-EPDE-VLILELLEEILQRRSAR 241 (436)
T ss_pred HHHHHHHhc-CCCc-ccCHHHHHHHHhhhhhc
Confidence 555555444 2232 34477888777765543
No 49
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.4e-18 Score=193.95 Aligned_cols=233 Identities=24% Similarity=0.260 Sum_probs=181.1
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC----CCeEEeehhhHHHHHhh
Q 006534 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE----VPFISCSASEFVELYVG 407 (641)
Q Consensus 332 ~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg----~pfi~vs~se~v~~~vG 407 (641)
.|++-..++|++.-+ ....| ...+.+|||+||+|||||.||++++.++. +.+..++|+.+...-..
T Consensus 408 ~d~i~~~s~kke~~n---~~~sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhh---hhccc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 567777777765544 22222 34456799999999999999999999873 56677899888766666
Q ss_pred cchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhh-cCC-CCCCcEEEEEecCCCCCCC
Q 006534 408 MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM-DGF-DSNSAVIVLGATNRSDVLD 485 (641)
Q Consensus 408 ~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~em-dg~-~~~~~ViVIaATN~pd~LD 485 (641)
...+.++.+|..|.+++|+||++|++|.|....+. ..+..++..+.++.++..+ ..| ..+..+.|||+.+....|+
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~--e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSN--ENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcc--cCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 66778899999999999999999999999873322 2344555566666666443 223 3344579999999999999
Q ss_pred hhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc----CCc
Q 006534 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL----NKV 561 (641)
Q Consensus 486 pALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~----~~~ 561 (641)
|-|.+|++|+.++.++.|+..+|.+||+..+.+.......+ |++.++..|+||...||..++++|...|... +.+
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~-dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~k 634 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMD-DLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPK 634 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhH-HHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999999998754222222 5677999999999999999999999888732 334
Q ss_pred cccHHHHHHHHHHHhc
Q 006534 562 VVEKIDFIHAVERSIA 577 (641)
Q Consensus 562 ~It~~d~~~Al~rvi~ 577 (641)
.+|.++|.++++....
T Consensus 635 lltke~f~ksL~~F~P 650 (952)
T KOG0735|consen 635 LLTKELFEKSLKDFVP 650 (952)
T ss_pred cchHHHHHHHHHhcCh
Confidence 8999999999987554
No 50
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.79 E-value=1.2e-18 Score=197.02 Aligned_cols=218 Identities=24% Similarity=0.299 Sum_probs=155.6
Q ss_pred ccccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc----------C
Q 006534 321 KVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------E 390 (641)
Q Consensus 321 ~~~~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el----------g 390 (641)
...+..++.+|+|++|+++..+.|+..+. ...+.++||+||||||||++|++++.++ +
T Consensus 54 ~~~~~~rp~~f~~iiGqs~~i~~l~~al~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~ 121 (531)
T TIGR02902 54 PLSEKTRPKSFDEIIGQEEGIKALKAALC------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEG 121 (531)
T ss_pred hHHHhhCcCCHHHeeCcHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCC
Confidence 44566678899999999999988875431 2345689999999999999999998653 4
Q ss_pred CCeEEeehhhH-------HHHHhhcc-------h---------HHHHHHHHHHHhcCCceEEEcchhhhhhhcCCccccc
Q 006534 391 VPFISCSASEF-------VELYVGMG-------A---------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIV 447 (641)
Q Consensus 391 ~pfi~vs~se~-------v~~~vG~~-------~---------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~ 447 (641)
.+|+.++|... .+...+.. + ..-...+.+| ...+|||||||.|....+
T Consensus 122 ~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~~~~q------ 192 (531)
T TIGR02902 122 AAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELHPVQM------ 192 (531)
T ss_pred CCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCCHHHH------
Confidence 68999998531 11111100 0 0001122222 235999999999965433
Q ss_pred chhHHHHHHHHHHhhhcCC--------------------------CCCCcEEE-EEecCCCCCCChhhhCCCCcceEEEe
Q 006534 448 SNDEREQTLNQLLTEMDGF--------------------------DSNSAVIV-LGATNRSDVLDPALRRPGRFDRVVMV 500 (641)
Q Consensus 448 ~~~e~~~~LnqLL~emdg~--------------------------~~~~~ViV-IaATN~pd~LDpALlRpgRFd~~I~v 500 (641)
+.|+..|+.. .-+..+.+ ++||+.|+.+++++++ |+. .+.+
T Consensus 193 ---------~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f 260 (531)
T TIGR02902 193 ---------NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFF 260 (531)
T ss_pred ---------HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeC
Confidence 3333333210 01123444 4556788999999998 775 7889
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 006534 501 ETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (641)
Q Consensus 501 ~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~r 574 (641)
++++.+++.+|++..+++.++.+++++ ++.|+..+. +++++.++++.|+..|..+++..|+.+|+++++..
T Consensus 261 ~pL~~eei~~Il~~~a~k~~i~is~~a-l~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 261 RPLLDEEIKEIAKNAAEKIGINLEKHA-LELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcCHHH-HHHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 999999999999999988877776664 677777664 89999999999999998888889999999999863
No 51
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.2e-18 Score=193.92 Aligned_cols=207 Identities=27% Similarity=0.420 Sum_probs=173.0
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhc
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSR 440 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r 440 (641)
+......+||+|+||||||++++++|.++|.+++.++|.+++....+..+.++...|.+|+...|+|||+-++|.++..+
T Consensus 427 ~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~ 506 (953)
T KOG0736|consen 427 LLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQ 506 (953)
T ss_pred ccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecC
Confidence 34455679999999999999999999999999999999999999889999999999999999999999999999998665
Q ss_pred CCcccccchhHHHHHHHHHHhhhcCCC-CCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC
Q 006534 441 DGRFRIVSNDEREQTLNQLLTEMDGFD-SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK 519 (641)
Q Consensus 441 ~~~~~~~~~~e~~~~LnqLL~emdg~~-~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~ 519 (641)
++ +.+-...+.++.++. .|.+. ...+++||++|+..+.+++.+++ -|-..|.++.|+.++|.+||+.++..
T Consensus 507 dg----ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~- 578 (953)
T KOG0736|consen 507 DG----GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNH- 578 (953)
T ss_pred CC----chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhc-
Confidence 43 334445566666666 33333 56789999999999999999998 66678999999999999999999976
Q ss_pred CCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHh---c-----------------CCccccHHHHHHHHHHHh
Q 006534 520 ELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGR---L-----------------NKVVVEKIDFIHAVERSI 576 (641)
Q Consensus 520 ~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r---~-----------------~~~~It~~d~~~Al~rvi 576 (641)
+.+..++.+..++.+|.||+.+||..++..+-..+.. . ....++++||..|+.+..
T Consensus 579 -~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~ 654 (953)
T KOG0736|consen 579 -LPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQ 654 (953)
T ss_pred -cccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHH
Confidence 4678899999999999999999999998776322211 1 125789999999998643
No 52
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.78 E-value=4e-18 Score=174.72 Aligned_cols=217 Identities=23% Similarity=0.281 Sum_probs=171.8
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHH
Q 006534 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (641)
Q Consensus 326 ~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~ 405 (641)
..+-+|+|.+|++++|++|+-++..-+. ......++|||||||.|||+||+.+|+|+|+.+-..++..+..
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~-------r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-- 90 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKK-------RGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-- 90 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHh-------cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--
Confidence 3567899999999999999998877543 2456779999999999999999999999999999888865522
Q ss_pred hhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC--------C--------C
Q 006534 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------S--------N 469 (641)
Q Consensus 406 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~--------~--------~ 469 (641)
...+-.++... ...+|+||||||.+.+.- + .-|.-.|+.|. . -
T Consensus 91 ----~gDlaaiLt~L--e~~DVLFIDEIHrl~~~v------------E---E~LYpaMEDf~lDI~IG~gp~Arsv~ldL 149 (332)
T COG2255 91 ----PGDLAAILTNL--EEGDVLFIDEIHRLSPAV------------E---EVLYPAMEDFRLDIIIGKGPAARSIRLDL 149 (332)
T ss_pred ----hhhHHHHHhcC--CcCCeEEEehhhhcChhH------------H---HHhhhhhhheeEEEEEccCCccceEeccC
Confidence 12233333332 234699999999996532 2 22334454442 1 1
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHH
Q 006534 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVN 549 (641)
Q Consensus 470 ~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~ 549 (641)
.++-+|+||.+...|...|+. ||.....+..++.++..+|+.......++.+.++ ...+||+++.| +++-..++++
T Consensus 150 ppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~-~a~eIA~rSRG-TPRIAnRLLr 225 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEE-AALEIARRSRG-TPRIANRLLR 225 (332)
T ss_pred CCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChH-HHHHHHHhccC-CcHHHHHHHH
Confidence 468899999999999999988 9999999999999999999999887777777766 47789999988 8999999999
Q ss_pred HHHHHHHhcCCccccHHHHHHHHHHHh
Q 006534 550 EAALLAGRLNKVVVEKIDFIHAVERSI 576 (641)
Q Consensus 550 eAa~~A~r~~~~~It~~d~~~Al~rvi 576 (641)
+-.-.|.-.+...|+.+-..+|+....
T Consensus 226 RVRDfa~V~~~~~I~~~ia~~aL~~L~ 252 (332)
T COG2255 226 RVRDFAQVKGDGDIDRDIADKALKMLD 252 (332)
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHhC
Confidence 999888878888898888888877643
No 53
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.78 E-value=2.7e-18 Score=200.85 Aligned_cols=224 Identities=23% Similarity=0.280 Sum_probs=166.8
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc----------CCCeEEe
Q 006534 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (641)
Q Consensus 327 ~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el----------g~pfi~v 396 (641)
.+-++++++|.++..+.+.+++. .+...++||+||||||||++|+++|.++ +..++.+
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLC------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHh------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 34578899999998876555542 2345679999999999999999999986 6789999
Q ss_pred ehhhHH--HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEE
Q 006534 397 SASEFV--ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (641)
Q Consensus 397 s~se~v--~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViV 474 (641)
+++.++ ..|.|+.+.+++++|+.+....|+||||||||.|.+.+... .+..+ .-+.|...+. +..+.+
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~--~~~~~----~~~~L~~~l~----~g~i~~ 314 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATS--GGSMD----ASNLLKPALS----SGKLRC 314 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCC--CccHH----HHHHHHHHHh----CCCeEE
Confidence 998887 47889999999999999988889999999999998654321 11111 1133333333 467999
Q ss_pred EEecCCC-----CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc----CCCCCCCCCCHHHHHHhCCCC-----C
Q 006534 475 LGATNRS-----DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK----KELPLAKDIDLGDIASMTTGF-----T 540 (641)
Q Consensus 475 IaATN~p-----d~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~----~~l~l~~dvdl~~LA~~t~Gf-----S 540 (641)
|++||.. -.+|+++.| ||. .|.++.|+.+++.+||+....+ .++.+.++ .+..++..+..| -
T Consensus 315 IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~-al~~~~~ls~ryi~~r~~ 390 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDE-ALEAAVELSARYINDRFL 390 (731)
T ss_pred EEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHH-HHHHHHHhhhcccccccC
Confidence 9999974 357999999 997 7999999999999999976654 23344444 366666666554 3
Q ss_pred HHHHHHHHHHHHHHHHhc----CCccccHHHHHHHHHHHh
Q 006534 541 GADLANLVNEAALLAGRL----NKVVVEKIDFIHAVERSI 576 (641)
Q Consensus 541 gaDL~~Lv~eAa~~A~r~----~~~~It~~d~~~Al~rvi 576 (641)
|.....++++|+...... ....|+.+|+..++.+..
T Consensus 391 P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 391 PDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred CHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 455678888887644322 245699999999998753
No 54
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=8.7e-18 Score=188.34 Aligned_cols=219 Identities=47% Similarity=0.700 Sum_probs=194.8
Q ss_pred hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEE
Q 006534 351 LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFI 430 (641)
Q Consensus 351 L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~vG~~~~~vr~lF~~A~~~aP~ILfI 430 (641)
+..+..+..++..+|++++++||||||||++++++|.+ +..++.+++.+....+.|.++..++.+|..+...+|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 45677788899999999999999999999999999999 77678899999999999999999999999999999999999
Q ss_pred cchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHH
Q 006534 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREA 510 (641)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~ 510 (641)
||+|.+.+.+.. ........+..+++..|+++.... +++++.||++..+|+++.+|+||++.+.+..|+...+.+
T Consensus 83 d~~~~~~~~~~~----~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~e 157 (494)
T COG0464 83 DEIDALAPKRSS----DQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLE 157 (494)
T ss_pred chhhhcccCccc----cccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHH
Confidence 999999988864 234455678899999999988444 899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC------CccccHHHHHHHHHHHhc
Q 006534 511 ILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN------KVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 511 IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~------~~~It~~d~~~Al~rvi~ 577 (641)
|+..+... ..+..+.+...++..+.|++++++..++.++...+.++. ...++.+++.++++++..
T Consensus 158 i~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 158 ILQIHTRL--MFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHHHHhc--CCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 99998854 455567889999999999999999999999988887764 456888999999998765
No 55
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.75 E-value=2.8e-17 Score=182.46 Aligned_cols=225 Identities=19% Similarity=0.265 Sum_probs=154.4
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEeehhh
Q 006534 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (641)
Q Consensus 326 ~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el-----g~pfi~vs~se 400 (641)
.+..+|++.+.-+........+.....+| ....++++||||||||||+|++++++++ +..++++++.+
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~-------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENP-------GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCc-------CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 35678999553233333333333333332 1233569999999999999999999987 56789999999
Q ss_pred HHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCC
Q 006534 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (641)
Q Consensus 401 ~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~ 480 (641)
|...+.........+-|..... .+++|+|||+|.+..+.. .. ..|+..++........+||+++..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~~------~~-------~~l~~~~n~l~~~~~~iiits~~~ 254 (450)
T PRK00149 189 FTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKER------TQ-------EEFFHTFNALHEAGKQIVLTSDRP 254 (450)
T ss_pred HHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCHH------HH-------HHHHHHHHHHHHCCCcEEEECCCC
Confidence 8776654422222223333222 467999999999854321 11 122222222222233466666666
Q ss_pred CCC---CChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 006534 481 SDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 481 pd~---LDpALlRpgRFd--~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A 555 (641)
|.. ++++|.+ ||. ..+.+.+|+.++|.+||+..+...++.+++++ ++.||....| +.++|..+++.....|
T Consensus 255 p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~-l~~ia~~~~~-~~R~l~~~l~~l~~~~ 330 (450)
T PRK00149 255 PKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEV-LEFIAKNITS-NVRELEGALNRLIAYA 330 (450)
T ss_pred HHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHcCcCC-CHHHHHHHHHHHHHHH
Confidence 644 6788887 885 58999999999999999999988778888775 8889998876 9999999999988777
Q ss_pred HhcCCccccHHHHHHHHHHHh
Q 006534 556 GRLNKVVVEKIDFIHAVERSI 576 (641)
Q Consensus 556 ~r~~~~~It~~d~~~Al~rvi 576 (641)
...+ ..||.+.+.+++....
T Consensus 331 ~~~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 331 SLTG-KPITLELAKEALKDLL 350 (450)
T ss_pred HhhC-CCCCHHHHHHHHHHhh
Confidence 6554 4589999999888764
No 56
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.75 E-value=1.1e-17 Score=196.74 Aligned_cols=220 Identities=24% Similarity=0.311 Sum_probs=149.7
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH---------
Q 006534 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV--------- 402 (641)
Q Consensus 332 ~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v--------- 402 (641)
+|++|++++|+.+.+.+...... +...+..+||+||||||||++|+++|++++.+|+.++++.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 35999999999998876543211 122334799999999999999999999999999999765432
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcC-----CC--------CC
Q 006534 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FD--------SN 469 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg-----~~--------~~ 469 (641)
..|.|.....+.+.|..+....| ||||||||.+.+..++. ..+.|+..+|. |. ..
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-----------~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-----------PASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-----------HHHHHHHhcCHHhcCccccccCCceecc
Confidence 24667777788888888877667 89999999998543211 12344444442 11 12
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc-----CCC-----CCCCCCCHHHHHH-hCCC
Q 006534 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK-----KEL-----PLAKDIDLGDIAS-MTTG 538 (641)
Q Consensus 470 ~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~-----~~l-----~l~~dvdl~~LA~-~t~G 538 (641)
.++++|+|||.++.++++|++ ||+ .|.++.|+.+++.+|++.++.. .++ .+.++ .+..|++ .+..
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~-~l~~i~~~~~~e 537 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDE-ALLLLIKYYTRE 537 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHH-HHHHHHHhcChh
Confidence 478999999999999999999 995 8899999999999999887622 222 22222 2455554 3333
Q ss_pred CCHHHHHHHHHHHHHHHHh----cCC--------ccccHHHHHHHHH
Q 006534 539 FTGADLANLVNEAALLAGR----LNK--------VVVEKIDFIHAVE 573 (641)
Q Consensus 539 fSgaDL~~Lv~eAa~~A~r----~~~--------~~It~~d~~~Al~ 573 (641)
+..++|+..+...+..+.+ .+. ..|+.+++.+-+.
T Consensus 538 ~g~R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 538 AGVRNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred cCChHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcC
Confidence 4446666555554433322 121 3666766655543
No 57
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=5.5e-17 Score=180.76 Aligned_cols=207 Identities=19% Similarity=0.234 Sum_probs=151.3
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCC------------
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV------------ 391 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~------------ 391 (641)
+..++.+|+|++|++++++.|...+.. .+.|.++||+||||||||++|+++|+.+++
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKK-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 344677899999999998888876642 245677999999999999999999998765
Q ss_pred ------------CeEEeehhhHHHHHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHH
Q 006534 392 ------------PFISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (641)
Q Consensus 392 ------------pfi~vs~se~v~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (641)
.++.++++. ..+...+|.+.+.+.. ....||||||+|.|... .
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~---------------a 133 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE---------------A 133 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH---------------H
Confidence 233333321 1234556666655542 22459999999998532 3
Q ss_pred HHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 006534 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (641)
Q Consensus 456 LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~ 535 (641)
.+.|+..++.. ...+++|++|+.++.+++++.+ |+. .+.+.+++.++...+++..+...++.+++++ ++.|+..
T Consensus 134 ~~~LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~ea-l~~Ia~~ 207 (472)
T PRK14962 134 FNALLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREA-LSFIAKR 207 (472)
T ss_pred HHHHHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHH
Confidence 46677777643 3457777777778899999998 764 8999999999999999999887777777664 8888888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 006534 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 536 t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~ 573 (641)
+.| +.+++.+.++.+...+ + ..||.+++.+++.
T Consensus 208 s~G-dlR~aln~Le~l~~~~---~-~~It~e~V~~~l~ 240 (472)
T PRK14962 208 ASG-GLRDALTMLEQVWKFS---E-GKITLETVHEALG 240 (472)
T ss_pred hCC-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHc
Confidence 765 7777777777655433 2 2488888877764
No 58
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=5.8e-17 Score=179.22 Aligned_cols=213 Identities=17% Similarity=0.219 Sum_probs=155.2
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe-------EE
Q 006534 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------IS 395 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pf-------i~ 395 (641)
++...+.+|+||+|++.+...|...+.. .+.+..+||+||||||||++|+++|..+++.- ..
T Consensus 9 ~~KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~ 77 (484)
T PRK14956 9 SRKYRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNE 77 (484)
T ss_pred HHHhCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCC
Confidence 3455677999999999999988887752 34556799999999999999999999987631 11
Q ss_pred e-ehhhHHHH----------HhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHH
Q 006534 396 C-SASEFVEL----------YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (641)
Q Consensus 396 v-s~se~v~~----------~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL 460 (641)
| +|..+... ....+...+|++.+.+.. ....|+||||+|.|.. ...|.||
T Consensus 78 C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~---------------~A~NALL 142 (484)
T PRK14956 78 CTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD---------------QSFNALL 142 (484)
T ss_pred CcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH---------------HHHHHHH
Confidence 1 11111110 012234566766665542 3345999999999853 2458888
Q ss_pred hhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCC
Q 006534 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (641)
Q Consensus 461 ~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfS 540 (641)
..|+. ....+++|.+|+.++.|.+++++ |.. .+.|..++.++..+.++..+.+.++.++++ .+..|++.+.| +
T Consensus 143 KtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~e-AL~~Ia~~S~G-d 215 (484)
T PRK14956 143 KTLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQE-GLFWIAKKGDG-S 215 (484)
T ss_pred HHhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-h
Confidence 88874 34678888899999999999998 653 788999999999999999998878777666 48889998887 8
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006534 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 541 gaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (641)
.++..++++.+...+ ...|+.+++.+.+
T Consensus 216 ~RdAL~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 216 VRDMLSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 899999998876543 2247776665433
No 59
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.74 E-value=1.1e-16 Score=175.31 Aligned_cols=223 Identities=22% Similarity=0.303 Sum_probs=150.8
Q ss_pred Ccccccc-ccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEeehhh
Q 006534 327 DTITFAD-VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (641)
Q Consensus 327 ~~vtf~D-V~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el-----g~pfi~vs~se 400 (641)
+..+|++ ++|.+. ......+.....+| .....+++||||||+|||+|++++++++ +..++++++.+
T Consensus 105 ~~~tfd~fi~g~~n-~~a~~~~~~~~~~~-------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~ 176 (405)
T TIGR00362 105 PKYTFDNFVVGKSN-RLAHAAALAVAENP-------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEK 176 (405)
T ss_pred CCCcccccccCCcH-HHHHHHHHHHHhCc-------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHH
Confidence 5678999 556443 22222233223332 1234579999999999999999999986 67899999998
Q ss_pred HHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCC
Q 006534 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (641)
Q Consensus 401 ~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~ 480 (641)
|...+.......-.+.|..... .+++|+|||+|.+..+.. . . ..|+..++........+||+++..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~~------~----~---~~l~~~~n~~~~~~~~iiits~~~ 242 (405)
T TIGR00362 177 FTNDFVNALRNNKMEEFKEKYR-SVDLLLIDDIQFLAGKER------T----Q---EEFFHTFNALHENGKQIVLTSDRP 242 (405)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH-hCCEEEEehhhhhcCCHH------H----H---HHHHHHHHHHHHCCCCEEEecCCC
Confidence 8776543321111112222222 357999999999854321 1 1 122222222212234466666666
Q ss_pred CC---CCChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 006534 481 SD---VLDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 481 pd---~LDpALlRpgRFd--~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A 555 (641)
|. .+++.+.+ ||. ..+.+++||.++|..|++..+...++.+++++ ++.||++..+ +.++|+.+++.....|
T Consensus 243 p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~-l~~ia~~~~~-~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 243 PKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEV-LEFIAKNIRS-NVRELEGALNRLLAYA 318 (405)
T ss_pred HHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 64 45688887 775 57999999999999999999988888887775 8889988876 8999999999988777
Q ss_pred HhcCCccccHHHHHHHHHHHh
Q 006534 556 GRLNKVVVEKIDFIHAVERSI 576 (641)
Q Consensus 556 ~r~~~~~It~~d~~~Al~rvi 576 (641)
...+ ..||.+.+.+++....
T Consensus 319 ~~~~-~~it~~~~~~~L~~~~ 338 (405)
T TIGR00362 319 SLTG-KPITLELAKEALKDLL 338 (405)
T ss_pred HHhC-CCCCHHHHHHHHHHhc
Confidence 5544 5689988888887654
No 60
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.74 E-value=8.5e-17 Score=187.71 Aligned_cols=221 Identities=22% Similarity=0.289 Sum_probs=159.2
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc----------CCCeEEeehh
Q 006534 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSAS 399 (641)
Q Consensus 330 tf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el----------g~pfi~vs~s 399 (641)
.++.++|.++..+++.+++.. +.+.++||+||||||||++|+++|... +..++.++..
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~ 251 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHH
Confidence 467899999987777766542 234578999999999999999999864 5566777766
Q ss_pred hHH--HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEe
Q 006534 400 EFV--ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (641)
Q Consensus 400 e~v--~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaA 477 (641)
.++ ..|.|+.+.+++.+|..+....++||||||||.|.+.+... ++..+...++..++ ....+.+|++
T Consensus 252 ~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~---~g~~d~~nlLkp~L-------~~g~i~vIgA 321 (758)
T PRK11034 252 SLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS---GGQVDAANLIKPLL-------SSGKIRVIGS 321 (758)
T ss_pred HHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCC---CcHHHHHHHHHHHH-------hCCCeEEEec
Confidence 666 46788889999999999988889999999999998654321 12222223333333 2567999999
Q ss_pred cCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC----CCCCCCCCCHHHHHHhC-----CCCCHHH
Q 006534 478 TNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIASMT-----TGFTGAD 543 (641)
Q Consensus 478 TN~pd-----~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~----~l~l~~dvdl~~LA~~t-----~GfSgaD 543 (641)
|+.++ .+|++|.| ||+ .|.++.|+.+++..||+.+..+. ++.+.++. +...+..+ ..+-|..
T Consensus 322 Tt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~a-l~~a~~ls~ryi~~r~lPdK 397 (758)
T PRK11034 322 TTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKA-VRAAVELAVKYINDRHLPDK 397 (758)
T ss_pred CChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHH-HHHHHHHhhccccCccChHH
Confidence 99864 57999999 997 79999999999999999876543 23333222 33333322 2345678
Q ss_pred HHHHHHHHHHHHHh----cCCccccHHHHHHHHHHHh
Q 006534 544 LANLVNEAALLAGR----LNKVVVEKIDFIHAVERSI 576 (641)
Q Consensus 544 L~~Lv~eAa~~A~r----~~~~~It~~d~~~Al~rvi 576 (641)
...++++|+..... ..+..|+.+|+.+.+.+..
T Consensus 398 aidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 398 AIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_pred HHHHHHHHHHhhccCcccccccccChhhHHHHHHHHh
Confidence 99999999865422 2345688889988887644
No 61
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.73 E-value=2.8e-16 Score=172.72 Aligned_cols=203 Identities=29% Similarity=0.415 Sum_probs=148.7
Q ss_pred CCccccccccCChHHHHH---HHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006534 326 GDTITFADVAGVDEAKEE---LEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 326 ~~~vtf~DV~G~~e~K~~---L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v 402 (641)
..+-+|+|++|++++... |.+++.. ..+.+++|+||||||||++|+++|+..+.+|+.+++...
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~- 72 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS- 72 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-
Confidence 355789999999998766 6666531 234479999999999999999999999999999987532
Q ss_pred HHHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEec
Q 006534 403 ELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaAT 478 (641)
+...++.+++.+.. ....||||||+|.+.... .+.|+..++ ...+++|++|
T Consensus 73 ------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~---------------q~~LL~~le----~~~iilI~at 127 (413)
T PRK13342 73 ------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQ---------------QDALLPHVE----DGTITLIGAT 127 (413)
T ss_pred ------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHH---------------HHHHHHHhh----cCcEEEEEeC
Confidence 34556677776642 256799999999985332 244555554 2456777665
Q ss_pred --CCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC--CC-CCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q 006534 479 --NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK--EL-PLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (641)
Q Consensus 479 --N~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~--~l-~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~ 553 (641)
|....+++++++ |+ ..+.+++++.++...+++..+... ++ .+.++ .++.+++.+.| ..+.+.++++.+..
T Consensus 128 t~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~-al~~l~~~s~G-d~R~aln~Le~~~~ 202 (413)
T PRK13342 128 TENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDE-ALDALARLANG-DARRALNLLELAAL 202 (413)
T ss_pred CCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHH-HHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 334588999998 77 588999999999999999887642 32 44444 36677887755 77888888877664
Q ss_pred HHHhcCCccccHHHHHHHHHHHh
Q 006534 554 LAGRLNKVVVEKIDFIHAVERSI 576 (641)
Q Consensus 554 ~A~r~~~~~It~~d~~~Al~rvi 576 (641)
. ...|+.+++.+++....
T Consensus 203 ~-----~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 203 G-----VDSITLELLEEALQKRA 220 (413)
T ss_pred c-----cCCCCHHHHHHHHhhhh
Confidence 4 45699999998887654
No 62
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.72 E-value=1.2e-15 Score=163.79 Aligned_cols=225 Identities=23% Similarity=0.248 Sum_probs=154.2
Q ss_pred ccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC---------CCeEEeeh
Q 006534 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSA 398 (641)
Q Consensus 328 ~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg---------~pfi~vs~ 398 (641)
....++++|.++..++|...+..... ...+.+++|+||||||||+++++++.++. +++++++|
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 34456899999988888877754221 23456799999999999999999998652 57888887
Q ss_pred hhHHH----------HHh--hc-------c-hHHHHHHHHHHH-hcCCceEEEcchhhhhhhcCCcccccchhHHHHHHH
Q 006534 399 SEFVE----------LYV--GM-------G-ASRVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (641)
Q Consensus 399 se~v~----------~~v--G~-------~-~~~vr~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln 457 (641)
....+ ... |. + ...+..+++... ...+.||+|||+|.+.... ...+.
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~------------~~~L~ 150 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD------------DDLLY 150 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC------------cHHHH
Confidence 54321 111 11 1 122344444443 2446799999999996221 12455
Q ss_pred HHHhhhcC-CCCCCcEEEEEecCCCC---CCChhhhCCCCcc-eEEEecCCCHHHHHHHHHHHHhc--CCCCCCCCCCHH
Q 006534 458 QLLTEMDG-FDSNSAVIVLGATNRSD---VLDPALRRPGRFD-RVVMVETPDKIGREAILKVHVSK--KELPLAKDIDLG 530 (641)
Q Consensus 458 qLL~emdg-~~~~~~ViVIaATN~pd---~LDpALlRpgRFd-~~I~v~~Pd~~eR~~IL~~~l~~--~~l~l~~dvdl~ 530 (641)
+|+...+. ...+.++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++.++.. .+..+++++ ++
T Consensus 151 ~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~-l~ 227 (365)
T TIGR02928 151 QLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGV-IP 227 (365)
T ss_pred hHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhH-HH
Confidence 66654221 12236788999999885 57888877 674 67999999999999999998862 111233332 33
Q ss_pred H---HHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHh
Q 006534 531 D---IASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (641)
Q Consensus 531 ~---LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~rvi 576 (641)
. ++..+.| ..+.+.+++..|+..|..++...|+.+|+..|++...
T Consensus 228 ~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 228 LCAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE 275 (365)
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 3 3444455 6677888999999999888888999999999988764
No 63
>PRK04195 replication factor C large subunit; Provisional
Probab=99.72 E-value=2.1e-16 Score=176.86 Aligned_cols=210 Identities=24% Similarity=0.282 Sum_probs=150.6
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~ 403 (641)
+...+.+|+||+|+++++++|.+.+....+ ..+++++||+||||||||++|+++|++++.+++.+++++...
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 344667899999999999999998865432 234789999999999999999999999999999999876532
Q ss_pred HHhhcchHHHHHHHHHHHh------cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEe
Q 006534 404 LYVGMGASRVRDLFARAKK------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (641)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaA 477 (641)
...++.+...+.. ..+.||+|||+|.+....+ ...++.|+..++. .+..+|++
T Consensus 78 ------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-----------~~~~~aL~~~l~~----~~~~iIli 136 (482)
T PRK04195 78 ------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-----------RGGARAILELIKK----AKQPIILT 136 (482)
T ss_pred ------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-----------hhHHHHHHHHHHc----CCCCEEEe
Confidence 1223333333321 2467999999999864221 1233455555552 22345567
Q ss_pred cCCCCCCCh-hhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 006534 478 TNRSDVLDP-ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAG 556 (641)
Q Consensus 478 TN~pd~LDp-ALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~ 556 (641)
+|.+..+++ .+.+ ....|.|+.|+..+...+++..+.+.++.++++ .+..|+..+.| |++.+++.....+
T Consensus 137 ~n~~~~~~~k~Lrs---r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~e-aL~~Ia~~s~G----DlR~ain~Lq~~a- 207 (482)
T PRK04195 137 ANDPYDPSLRELRN---ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDE-ALKEIAERSGG----DLRSAINDLQAIA- 207 (482)
T ss_pred ccCccccchhhHhc---cceEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC----CHHHHHHHHHHHh-
Confidence 788877777 5544 345899999999999999999998888887765 48888887654 7888887766544
Q ss_pred hcCCccccHHHHHHHH
Q 006534 557 RLNKVVVEKIDFIHAV 572 (641)
Q Consensus 557 r~~~~~It~~d~~~Al 572 (641)
.+...|+.+++....
T Consensus 208 -~~~~~it~~~v~~~~ 222 (482)
T PRK04195 208 -EGYGKLTLEDVKTLG 222 (482)
T ss_pred -cCCCCCcHHHHHHhh
Confidence 244567777776544
No 64
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.72 E-value=1.4e-16 Score=176.35 Aligned_cols=225 Identities=16% Similarity=0.228 Sum_probs=153.6
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEeehhh
Q 006534 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (641)
Q Consensus 326 ~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el-----g~pfi~vs~se 400 (641)
.+..+|++.+--+........+.....+|. ...+++||||||+|||+|++++++++ +..++++++.+
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~--------~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNPG--------RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCcC--------CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 466899998733443333334433333331 14569999999999999999999985 46788999999
Q ss_pred HHHHHhhcc-hHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006534 401 FVELYVGMG-ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 401 ~v~~~vG~~-~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN 479 (641)
|...+...- ...+.+ |.......+.+|+|||++.+..... ...+.-.+++.+. .....+||++.+
T Consensus 171 f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~~------~q~elf~~~n~l~-------~~~k~iIitsd~ 236 (440)
T PRK14088 171 FLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKTG------VQTELFHTFNELH-------DSGKQIVICSDR 236 (440)
T ss_pred HHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcHH------HHHHHHHHHHHHH-------HcCCeEEEECCC
Confidence 877654321 112222 3333334578999999998853321 1112222222222 233456666666
Q ss_pred CCCC---CChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 006534 480 RSDV---LDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (641)
Q Consensus 480 ~pd~---LDpALlRpgRF--d~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~ 554 (641)
.|.. +++.+.+ || +..+.+++||.+.|.+|++..+...++.+++++ ++.||....| +.++|+.+++.....
T Consensus 237 ~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev-~~~Ia~~~~~-~~R~L~g~l~~l~~~ 312 (440)
T PRK14088 237 EPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEV-LNFVAENVDD-NLRRLRGAIIKLLVY 312 (440)
T ss_pred CHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHhcccc-CHHHHHHHHHHHHHH
Confidence 6654 4567777 66 568899999999999999999988788888876 8889998876 899999999998776
Q ss_pred HHhcCCccccHHHHHHHHHHHhc
Q 006534 555 AGRLNKVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 555 A~r~~~~~It~~d~~~Al~rvi~ 577 (641)
+...+ ..||.+...+++...+.
T Consensus 313 ~~~~~-~~it~~~a~~~L~~~~~ 334 (440)
T PRK14088 313 KETTG-EEVDLKEAILLLKDFIK 334 (440)
T ss_pred HHHhC-CCCCHHHHHHHHHHHhc
Confidence 65544 45888888888876643
No 65
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=2.8e-16 Score=169.97 Aligned_cols=213 Identities=17% Similarity=0.172 Sum_probs=151.0
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEE--------
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-------- 395 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~-------- 395 (641)
+...+.+|+||+|++++++.|+..+.. .+.|..+||+||||+|||++|+++|.++++....
T Consensus 8 ~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 8 RKWRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HHhCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 344667899999999999998877742 2456678999999999999999999988642110
Q ss_pred eehhhHHHH----------HhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHh
Q 006534 396 CSASEFVEL----------YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (641)
Q Consensus 396 vs~se~v~~----------~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~ 461 (641)
.+|.++... ........++++.+.+.. ....|++|||+|.+.. ...+.|+.
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~---------------~a~naLLk 141 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR---------------HSFNALLK 141 (363)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH---------------HHHHHHHH
Confidence 011111110 001233456666665432 1234999999998842 23466777
Q ss_pred hhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCH
Q 006534 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (641)
Q Consensus 462 emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSg 541 (641)
.++.. ...+.+|.+|+.++.+.+.+.+ |+ ..+.+++|+.++..++++..+++.+..++++ .+..++..+.| +.
T Consensus 142 ~lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~-al~~ia~~s~G-~~ 214 (363)
T PRK14961 142 TLEEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEY-ALKLIAYHAHG-SM 214 (363)
T ss_pred HHhcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 77743 3456667677778889999887 65 4889999999999999999988777666655 47778888876 88
Q ss_pred HHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 006534 542 ADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 542 aDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~ 573 (641)
+++.++++.+... +...|+.+++.+++.
T Consensus 215 R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 215 RDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 8888888877644 345688888877653
No 66
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=4.2e-16 Score=174.69 Aligned_cols=216 Identities=19% Similarity=0.257 Sum_probs=159.0
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe----------
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF---------- 393 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pf---------- 393 (641)
.+..+-+|+|++|++.+.+.|+..+. ..+.+.++||+||||||||++|+++|..+++.-
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~-----------~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTIL-----------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 44567799999999999998887664 235677899999999999999999999986531
Q ss_pred -EEe-ehhhHHHH----------HhhcchHHHHHHHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHHHH
Q 006534 394 -ISC-SASEFVEL----------YVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (641)
Q Consensus 394 -i~v-s~se~v~~----------~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln 457 (641)
..| +|..+.+. ....+...++++++.+... ...|++|||+|.+.. ...+
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~---------------~a~n 146 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK---------------GAFN 146 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH---------------HHHH
Confidence 111 11121110 0123456788888777532 235999999998842 2357
Q ss_pred HHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC
Q 006534 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (641)
Q Consensus 458 qLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~ 537 (641)
.|+..|+. ....+++|.+|+.++.+++.+++ |. ..+.+..++.++...+++..+++.++.++++ .+..|+..+.
T Consensus 147 aLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~e-AL~~Ia~~s~ 220 (507)
T PRK06645 147 ALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIE-ALRIIAYKSE 220 (507)
T ss_pred HHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC
Confidence 77777773 34567777788888899999987 65 4788999999999999999998887777655 4788898887
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 006534 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 538 GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~ 573 (641)
| +.+++.++++.++..+... ...||.+++.+.+.
T Consensus 221 G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~llg 254 (507)
T PRK06645 221 G-SARDAVSILDQAASMSAKS-DNIISPQVINQMLG 254 (507)
T ss_pred C-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHHC
Confidence 7 9999999999988766322 23588877766543
No 67
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=2.4e-16 Score=178.89 Aligned_cols=205 Identities=20% Similarity=0.233 Sum_probs=152.5
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----------
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p----------- 392 (641)
...++.+|+||+|++.+++.|...+. ..+.+..+||+||||||||++|+++|+.+++.
T Consensus 7 rKyRPktFddVIGQe~vv~~L~~aI~-----------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSRALSSALE-----------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 34466789999999999999988875 23556789999999999999999999998652
Q ss_pred -------------eEEeehhhHHHHHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHH
Q 006534 393 -------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (641)
Q Consensus 393 -------------fi~vs~se~v~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (641)
++.+++++ ..+...+|++...+.. ....|++|||+|.|... .
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~---------------A 134 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH---------------S 134 (702)
T ss_pred HHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH---------------H
Confidence 22222211 1234567777665532 33469999999998532 3
Q ss_pred HHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 006534 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (641)
Q Consensus 456 LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~ 535 (641)
.+.|+..|+.. ...+.+|.+|+.+..+.+.+++ |. .++.+.+++.++..+.++..+.+.++.++++ .+..|++.
T Consensus 135 ~NALLKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~e-AL~~IA~~ 208 (702)
T PRK14960 135 FNALLKTLEEP--PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQD-AIWQIAES 208 (702)
T ss_pred HHHHHHHHhcC--CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 46788877743 3456777777778888888886 65 4889999999999999999998888777665 47888988
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 006534 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (641)
Q Consensus 536 t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~A 571 (641)
+.| +.+++.+++..+... +...|+.+++...
T Consensus 209 S~G-dLRdALnLLDQaIay----g~g~IT~edV~~l 239 (702)
T PRK14960 209 AQG-SLRDALSLTDQAIAY----GQGAVHHQDVKEM 239 (702)
T ss_pred cCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 876 889999998877643 3456888777554
No 68
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.70 E-value=2.6e-15 Score=163.00 Aligned_cols=243 Identities=21% Similarity=0.214 Sum_probs=162.4
Q ss_pred ccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEeehhhHH
Q 006534 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEFV 402 (641)
Q Consensus 328 ~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el-----g~pfi~vs~se~v 402 (641)
....+.++|.++..++|...+..... ...|.+++|+||||||||++++.++.++ ++.+++++|....
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 34557799999988888777743211 2345679999999999999999999876 5788999885331
Q ss_pred ----------HHHhh-------cchH-HHHHHHHHHHh-cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhh
Q 006534 403 ----------ELYVG-------MGAS-RVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (641)
Q Consensus 403 ----------~~~vG-------~~~~-~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~em 463 (641)
....+ .... .+..+.+.... ..+.||+|||+|.+....+ .+.+..|+..+
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-----------~~~l~~l~~~~ 166 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-----------NDVLYSLLRAH 166 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-----------chHHHHHHHhh
Confidence 12212 0111 22222332222 3467999999999972211 23566777666
Q ss_pred cCCCCCCcEEEEEecCCC---CCCChhhhCCCCcc-eEEEecCCCHHHHHHHHHHHHhcC--CCCCCCCCCHHHHHHhCC
Q 006534 464 DGFDSNSAVIVLGATNRS---DVLDPALRRPGRFD-RVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGDIASMTT 537 (641)
Q Consensus 464 dg~~~~~~ViVIaATN~p---d~LDpALlRpgRFd-~~I~v~~Pd~~eR~~IL~~~l~~~--~l~l~~dvdl~~LA~~t~ 537 (641)
+.... .++.+|+++|.. +.+++.+.+ ||. ..|.+++++.++..+|++.++... ...+.++ .++.+++.+.
T Consensus 167 ~~~~~-~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~-~l~~i~~~~~ 242 (394)
T PRK00411 167 EEYPG-ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDE-VLDLIADLTA 242 (394)
T ss_pred hccCC-CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHh-HHHHHHHHHH
Confidence 55432 368888888876 357777766 553 578999999999999999988542 1123333 3666777663
Q ss_pred CC--CHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcch-hhhhccCChhHHHH
Q 006534 538 GF--TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGI-EKKTAKLKGSEKAV 593 (641)
Q Consensus 538 Gf--SgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~rvi~g~-~~~~~~ls~~ek~~ 593 (641)
+. ..+.+.+++..|+..|..++...|+.+|+..|+++..... ...-..++..++.+
T Consensus 243 ~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~ 301 (394)
T PRK00411 243 REHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLL 301 (394)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 32 4566778899999999888889999999999999874332 22233556665544
No 69
>PRK06893 DNA replication initiation factor; Validated
Probab=99.70 E-value=7.5e-16 Score=156.48 Aligned_cols=211 Identities=13% Similarity=0.143 Sum_probs=139.4
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH
Q 006534 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (641)
Q Consensus 327 ~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~ 403 (641)
+..+|++++|.+... .+..+.... . ......++||||||||||+|++|+|+++ +....+++..+...
T Consensus 11 ~~~~fd~f~~~~~~~-~~~~~~~~~------~---~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~ 80 (229)
T PRK06893 11 DDETLDNFYADNNLL-LLDSLRKNF------I---DLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY 80 (229)
T ss_pred CcccccccccCChHH-HHHHHHHHh------h---ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh
Confidence 567899999776532 122221111 1 1122358999999999999999999985 34445555432211
Q ss_pred HHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCC
Q 006534 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (641)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~ 483 (641)
. ..++++.. ....+|+|||++.+.... +.+..+..++..+. .....++|++++..|..
T Consensus 81 ~--------~~~~~~~~--~~~dlLilDDi~~~~~~~----------~~~~~l~~l~n~~~--~~~~~illits~~~p~~ 138 (229)
T PRK06893 81 F--------SPAVLENL--EQQDLVCLDDLQAVIGNE----------EWELAIFDLFNRIK--EQGKTLLLISADCSPHA 138 (229)
T ss_pred h--------hHHHHhhc--ccCCEEEEeChhhhcCCh----------HHHHHHHHHHHHHH--HcCCcEEEEeCCCChHH
Confidence 1 11223322 235699999999885322 22333444444432 12233556666666765
Q ss_pred CC---hhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCC
Q 006534 484 LD---PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (641)
Q Consensus 484 LD---pALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~ 560 (641)
++ +.|.++.+++..+.++.|+.++|.+|++..+..+++.+++++ ++.|+++..| +.+.|.++++.....+. ..+
T Consensus 139 l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v-~~~L~~~~~~-d~r~l~~~l~~l~~~~~-~~~ 215 (229)
T PRK06893 139 LSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEV-ANFLLKRLDR-DMHTLFDALDLLDKASL-QAQ 215 (229)
T ss_pred ccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHHHHHHH-hcC
Confidence 54 889886667789999999999999999999988888888875 8889998886 88999999997654333 333
Q ss_pred ccccHHHHHHHH
Q 006534 561 VVVEKIDFIHAV 572 (641)
Q Consensus 561 ~~It~~d~~~Al 572 (641)
..||...+.+++
T Consensus 216 ~~it~~~v~~~L 227 (229)
T PRK06893 216 RKLTIPFVKEIL 227 (229)
T ss_pred CCCCHHHHHHHh
Confidence 468888877765
No 70
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.70 E-value=3.5e-16 Score=185.33 Aligned_cols=202 Identities=24% Similarity=0.341 Sum_probs=150.9
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc----------CCCeEEeeh
Q 006534 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSA 398 (641)
Q Consensus 329 vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el----------g~pfi~vs~ 398 (641)
-.+++++|.++..+++.+++. .+.+++++|+||||||||++|+++|.+. +.+++.++.
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILG------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHc------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 458899999998887777753 3455689999999999999999999975 478999999
Q ss_pred hhHH--HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEE
Q 006534 399 SEFV--ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (641)
Q Consensus 399 se~v--~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIa 476 (641)
+.++ ..|.|+.+.+++.+|+.+....++||||||||.|.+..+.. +..+ .-+-|...+. +..+.+|+
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---g~~~----~a~lLkp~l~----rg~l~~Ig 312 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE---GAID----AANILKPALA----RGELQCIG 312 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC---Cccc----HHHHhHHHHh----CCCcEEEE
Confidence 8887 36788889999999999988889999999999998654321 1111 1122222222 56689999
Q ss_pred ecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc----CCCCCCCCCCHHHHHHhCCCCC-----HH
Q 006534 477 ATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK----KELPLAKDIDLGDIASMTTGFT-----GA 542 (641)
Q Consensus 477 ATN~pd-----~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~----~~l~l~~dvdl~~LA~~t~GfS-----ga 542 (641)
+|+..+ ..|+++.+ ||. .|.++.|+.++...|++..... .++.+.+++ +..++..+.+|- |.
T Consensus 313 aTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~dea-l~~i~~ls~~yi~~r~lPd 388 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKA-LEAAAKLSDQYIADRFLPD 388 (821)
T ss_pred eCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHhhccCccccCch
Confidence 998763 47999999 996 6899999999999998865432 234444443 666666666653 56
Q ss_pred HHHHHHHHHHHHHHh
Q 006534 543 DLANLVNEAALLAGR 557 (641)
Q Consensus 543 DL~~Lv~eAa~~A~r 557 (641)
..-.++++|+.....
T Consensus 389 kaidlld~a~a~~~~ 403 (821)
T CHL00095 389 KAIDLLDEAGSRVRL 403 (821)
T ss_pred HHHHHHHHHHHHHHh
Confidence 677888988876543
No 71
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=1.3e-16 Score=180.77 Aligned_cols=198 Identities=17% Similarity=0.253 Sum_probs=146.4
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----------
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p----------- 392 (641)
.+..+.+|+||+|++++++.|.+.+.. .+.+..+||+||+|||||++|+.+|+.+++.
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 344667899999999999999888863 3456678999999999999999999998761
Q ss_pred -eEEe-ehh--------hHHHH--HhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHH
Q 006534 393 -FISC-SAS--------EFVEL--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (641)
Q Consensus 393 -fi~v-s~s--------e~v~~--~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (641)
.-.| +|. ++++. -...+...+|++.+.+.. ....|+||||+|.|.. ...
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~---------------~Aa 141 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN---------------HAF 141 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH---------------HHH
Confidence 1111 111 11110 011245667777766542 3346999999999853 245
Q ss_pred HHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhC
Q 006534 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (641)
Q Consensus 457 nqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t 536 (641)
|.||..|+. ...++++|.+||.++.|.+.+++ |. .++.|..++.++..+.|+..+.+.++..+++ .+..|++.+
T Consensus 142 NALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~e-AL~~IA~~A 215 (700)
T PRK12323 142 NAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVN-ALRLLAQAA 215 (700)
T ss_pred HHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 888988884 34567888889999999999998 54 4788999999999999998887776665544 367788888
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 006534 537 TGFTGADLANLVNEAALL 554 (641)
Q Consensus 537 ~GfSgaDL~~Lv~eAa~~ 554 (641)
.| +.++..++++++...
T Consensus 216 ~G-s~RdALsLLdQaia~ 232 (700)
T PRK12323 216 QG-SMRDALSLTDQAIAY 232 (700)
T ss_pred CC-CHHHHHHHHHHHHHh
Confidence 77 899999999887653
No 72
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=2.1e-16 Score=180.94 Aligned_cols=199 Identities=19% Similarity=0.248 Sum_probs=147.7
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe-------EEe
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISC 396 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pf-------i~v 396 (641)
++..+.+|+||+|++++++.|+..++ ..+.+..+||+||+|||||++|+++|+.+++.- -.|
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~-----------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALD-----------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHh-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 44567789999999999999988875 234566789999999999999999999886521 000
Q ss_pred -ehhhHH--------HH--HhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHh
Q 006534 397 -SASEFV--------EL--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (641)
Q Consensus 397 -s~se~v--------~~--~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~ 461 (641)
+|..+. +. ....+...++++++.+.. ....|+||||+|.|.. ...|.||.
T Consensus 77 ~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~---------------~A~NALLK 141 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN---------------HAFNAMLK 141 (830)
T ss_pred HHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH---------------HHHHHHHH
Confidence 111111 00 012234567777776642 2345999999999853 23477888
Q ss_pred hhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCH
Q 006534 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (641)
Q Consensus 462 emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSg 541 (641)
.|+.. ..++++|.+||.++.|.+.+++ |. .++.|..++.++..++|+..+.+.++.++++ .+..|++...| +.
T Consensus 142 tLEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~e-AL~lIA~~A~G-sm 214 (830)
T PRK07003 142 TLEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQ-ALRLLARAAQG-SM 214 (830)
T ss_pred HHHhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 88743 3467888889999999999988 65 4889999999999999999998877777665 48888998887 88
Q ss_pred HHHHHHHHHHHHHH
Q 006534 542 ADLANLVNEAALLA 555 (641)
Q Consensus 542 aDL~~Lv~eAa~~A 555 (641)
++..+++.++..+.
T Consensus 215 RdALsLLdQAia~~ 228 (830)
T PRK07003 215 RDALSLTDQAIAYS 228 (830)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999988877543
No 73
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=2.6e-16 Score=176.88 Aligned_cols=206 Identities=17% Similarity=0.189 Sum_probs=152.7
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----------
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p----------- 392 (641)
++..+-+|+||+|++.+++.|...+.. .+.|..+||+||||||||++|+++|..+++.
T Consensus 8 ~kyRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 8 RKWRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHHCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 344677899999999999999888853 3456679999999999999999999988653
Q ss_pred -------------eEEeehhhHHHHHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHH
Q 006534 393 -------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (641)
Q Consensus 393 -------------fi~vs~se~v~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (641)
++.++++ ...+...+|++.+.+.. ....|++|||+|.|... .
T Consensus 77 ~~C~~i~~g~~~d~~eidaa------s~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~---------------a 135 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAA------SRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH---------------S 135 (509)
T ss_pred HHHHHHhcCCCceEEEEccc------ccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH---------------H
Confidence 3333322 12345567777766542 22359999999998532 3
Q ss_pred HHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 006534 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (641)
Q Consensus 456 LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~ 535 (641)
.|.||..|+.. ...+++|.+|+.+..+.+.+++ |. ..+.+..++.++....++..+.+.++.++++ .+..+++.
T Consensus 136 ~naLLk~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~-al~~ia~~ 209 (509)
T PRK14958 136 FNALLKTLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENA-ALDLLARA 209 (509)
T ss_pred HHHHHHHHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 47788888754 3456777777888888888887 54 3778999999999999999988888777655 47788888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006534 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 536 t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (641)
+.| +.+++.++++.+... +...|+.+++.+.+
T Consensus 210 s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 210 ANG-SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred cCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 876 899999999887644 23467777766544
No 74
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.70 E-value=5.6e-16 Score=155.17 Aligned_cols=206 Identities=17% Similarity=0.234 Sum_probs=139.1
Q ss_pred Ccccccccc--CChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhH
Q 006534 327 DTITFADVA--GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (641)
Q Consensus 327 ~~vtf~DV~--G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~ 401 (641)
...+|++.+ +...+.+.+++++. ...+.+++|+||||||||++|++++.++ +.++++++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 346788876 34445566655542 2345689999999999999999999876 578999999887
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC
Q 006534 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (641)
Q Consensus 402 v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~p 481 (641)
.... .+++.... .+.+|+|||+|.+.... +....+..++..+. .....+|++++..+
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~----------~~~~~L~~~l~~~~---~~~~~iIits~~~~ 134 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP----------EWQEALFHLYNRVR---EAGGRLLIAGRAAP 134 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh----------HHHHHHHHHHHHHH---HcCCeEEEECCCCh
Confidence 6432 23333222 24599999999985321 11122333333332 12233444444444
Q ss_pred CCCC---hhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 006534 482 DVLD---PALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAG 556 (641)
Q Consensus 482 d~LD---pALlRpgRF--d~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~ 556 (641)
..++ +.|.+ || ..++.+++|+.+++..+++.++.+.++.+++++ +..|+... +-+.++|.++++++...+.
T Consensus 135 ~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~-l~~L~~~~-~gn~r~L~~~l~~~~~~~~ 210 (226)
T TIGR03420 135 AQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEV-ADYLLRHG-SRDMGSLMALLDALDRASL 210 (226)
T ss_pred HHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhc-cCCHHHHHHHHHHHHHHHH
Confidence 3332 67776 55 578999999999999999998877777777664 78888864 4599999999999887665
Q ss_pred hcCCccccHHHHHHHH
Q 006534 557 RLNKVVVEKIDFIHAV 572 (641)
Q Consensus 557 r~~~~~It~~d~~~Al 572 (641)
..+ ..|+.+.+.+.+
T Consensus 211 ~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 211 AAK-RKITIPFVKEVL 225 (226)
T ss_pred HhC-CCCCHHHHHHHh
Confidence 544 568888776654
No 75
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.69 E-value=1.1e-15 Score=173.26 Aligned_cols=226 Identities=21% Similarity=0.230 Sum_probs=152.8
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEeehhh
Q 006534 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (641)
Q Consensus 326 ~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el-----g~pfi~vs~se 400 (641)
.+..+|++++.-+........+.....++. ...+.++|||++|+|||+|++|+++++ +..++++++.+
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~~~-------~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee 354 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEAPA-------KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE 354 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhCcc-------ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 356899998743332222222222222221 123459999999999999999999976 57889999999
Q ss_pred HHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCC
Q 006534 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (641)
Q Consensus 401 ~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~ 480 (641)
|++.+.........+.|.... ..+++|+||||+.+..+.. ...+.-.++|.+. .+.+-+||++...
T Consensus 355 f~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke~------tqeeLF~l~N~l~-------e~gk~IIITSd~~ 420 (617)
T PRK14086 355 FTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKES------TQEEFFHTFNTLH-------NANKQIVLSSDRP 420 (617)
T ss_pred HHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCHH------HHHHHHHHHHHHH-------hcCCCEEEecCCC
Confidence 988765443332233444332 3467999999999864321 1112222333322 2233355544433
Q ss_pred C---CCCChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 006534 481 S---DVLDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 481 p---d~LDpALlRpgRF--d~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A 555 (641)
| ..+++.|.+ || ...+.+..||.+.|.+||+.++...++.+.+++ ++.|+.+..+ +.++|+.++++....|
T Consensus 421 P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eV-i~yLa~r~~r-nvR~LegaL~rL~a~a 496 (617)
T PRK14086 421 PKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEV-LEFIASRISR-NIRELEGALIRVTAFA 496 (617)
T ss_pred hHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 4 357889988 76 667899999999999999999999899888876 8888888875 8999999999887666
Q ss_pred HhcCCccccHHHHHHHHHHHhc
Q 006534 556 GRLNKVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 556 ~r~~~~~It~~d~~~Al~rvi~ 577 (641)
...+ ..||.+.+++.++..+.
T Consensus 497 ~~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 497 SLNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HhhC-CCCCHHHHHHHHHHhhc
Confidence 5544 55888888888876544
No 76
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.68 E-value=1.1e-15 Score=169.53 Aligned_cols=227 Identities=18% Similarity=0.213 Sum_probs=150.7
Q ss_pred CCcccccccc-CChHH--HHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehh
Q 006534 326 GDTITFADVA-GVDEA--KEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (641)
Q Consensus 326 ~~~vtf~DV~-G~~e~--K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~s 399 (641)
.+..||++.+ |.... ...++++. .++. .......++++||||||+|||+|++++++++ +..++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a---~~~~---~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFT---KVSE---QGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHH---hccc---cccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 4667899976 53322 22333332 2111 0111234679999999999999999999875 7889999998
Q ss_pred hHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006534 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 400 e~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN 479 (641)
+|...+...-...-...|.... ..+++|+|||++.+.++.. ..++.-.++|.+.. ....+|++++.
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~------~qeelf~l~N~l~~-------~~k~IIlts~~ 244 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA------TQEEFFHTFNSLHT-------EGKLIVISSTC 244 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh------hHHHHHHHHHHHHH-------CCCcEEEecCC
Confidence 8876544322111112344333 3466999999999854321 22333344444432 22346665555
Q ss_pred CC---CCCChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHH-
Q 006534 480 RS---DVLDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL- 553 (641)
Q Consensus 480 ~p---d~LDpALlRpgRFd--~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~- 553 (641)
.| ..++++|.+ ||. ..+.+.+|+.++|..||+..+...++.+++++ ++.|+....+ +.++|.+.++..+.
T Consensus 245 ~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~ev-l~~la~~~~~-dir~L~g~l~~l~~~ 320 (445)
T PRK12422 245 APQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETA-LDFLIEALSS-NVKSLLHALTLLAKR 320 (445)
T ss_pred CHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 55 356788888 884 78999999999999999999988888887775 7778887765 88999999988753
Q ss_pred --HHHhcCCccccHHHHHHHHHHHhc
Q 006534 554 --LAGRLNKVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 554 --~A~r~~~~~It~~d~~~Al~rvi~ 577 (641)
.+.. ....|+.+++.+++...+.
T Consensus 321 ~a~~~~-~~~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 321 VAYKKL-SHQLLYVDDIKALLHDVLE 345 (445)
T ss_pred HHHHHh-hCCCCCHHHHHHHHHHhhh
Confidence 2222 2356899999998877644
No 77
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=8.4e-16 Score=175.90 Aligned_cols=211 Identities=20% Similarity=0.271 Sum_probs=150.7
Q ss_pred CCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe-------EEe-
Q 006534 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISC- 396 (641)
Q Consensus 325 ~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pf-------i~v- 396 (641)
+..+.+|+||+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|..+++.. -.|
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECD 77 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCH
Confidence 34567899999999999988887753 34566789999999999999999999987631 111
Q ss_pred ehhhH--------HHHH--hhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhh
Q 006534 397 SASEF--------VELY--VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (641)
Q Consensus 397 s~se~--------v~~~--vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~e 462 (641)
+|..+ .+.. ...+...+|++.+.+.. +...|+||||+|.|.. ...|.||..
T Consensus 78 ~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~---------------~a~NALLKt 142 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFNALLKT 142 (647)
T ss_pred HHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH---------------HHHHHHHHH
Confidence 01111 1000 01234556776665542 2345999999999853 345888888
Q ss_pred hcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHH
Q 006534 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (641)
Q Consensus 463 mdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSga 542 (641)
|+. ....+++|.+|+.+..|.+.+++ |. ..+.|..++.++....|+..+...++..+++ .+..|+..+.| +.+
T Consensus 143 LEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~-aL~~Ia~~s~G-s~R 215 (647)
T PRK07994 143 LEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPR-ALQLLARAADG-SMR 215 (647)
T ss_pred HHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHH
Confidence 884 34567777788888899999988 63 6899999999999999999887777666544 47788888877 899
Q ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006534 543 DLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 543 DL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (641)
+..+++..|... +...|+.+++...+
T Consensus 216 ~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 216 DALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred HHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 999999877643 22346666555443
No 78
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.68 E-value=8.6e-16 Score=182.01 Aligned_cols=218 Identities=21% Similarity=0.288 Sum_probs=153.7
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc----------CCCeEEe
Q 006534 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (641)
Q Consensus 327 ~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el----------g~pfi~v 396 (641)
.+-++++++|+++... +++..+.. +...+++|+||||||||++|+.+|... +..++.+
T Consensus 182 r~~~ld~~iGr~~ei~---~~i~~l~r---------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 182 REGKIDPVLGRDDEIR---QMIDILLR---------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred cCCCCCcccCCHHHHH---HHHHHHhc---------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 4557899999999644 44443322 233578999999999999999999875 3557888
Q ss_pred ehhhHHH--HHhhcchHHHHHHHHHHHh-cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEE
Q 006534 397 SASEFVE--LYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (641)
Q Consensus 397 s~se~v~--~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~Vi 473 (641)
+.+.+.. .+.|+.+.+++.+|+.++. ..++||||||||.+.+.++.. +..+ .-|.|+-.+ .++.+.
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~---~~~d----~~n~Lkp~l----~~G~l~ 318 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA---GQGD----AANLLKPAL----ARGELR 318 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc---cccc----HHHHhhHHh----hCCCeE
Confidence 8877663 5788889999999999875 467899999999998654321 1222 113333333 256799
Q ss_pred EEEecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc----CCCCCCCCCCHHHHHHhCCCCC----
Q 006534 474 VLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK----KELPLAKDIDLGDIASMTTGFT---- 540 (641)
Q Consensus 474 VIaATN~pd-----~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~----~~l~l~~dvdl~~LA~~t~GfS---- 540 (641)
+|+||+..+ .+|+||.| ||. .|.++.|+.+++..||+.+... .++.+.++ .+..++..+.+|-
T Consensus 319 ~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~-al~~~~~ls~ryi~~r~ 394 (852)
T TIGR03345 319 TIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDE-AVVAAVELSHRYIPGRQ 394 (852)
T ss_pred EEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHH-HHHHHHHHccccccccc
Confidence 999998643 48999999 996 8999999999999998766543 23444444 4777777777663
Q ss_pred -HHHHHHHHHHHHHHHHhc-CCccccHHHHHHH
Q 006534 541 -GADLANLVNEAALLAGRL-NKVVVEKIDFIHA 571 (641)
Q Consensus 541 -gaDL~~Lv~eAa~~A~r~-~~~~It~~d~~~A 571 (641)
|...-.++++|+...... ....+..+++++.
T Consensus 395 LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~ 427 (852)
T TIGR03345 395 LPDKAVSLLDTACARVALSQNATPAALEDLRRR 427 (852)
T ss_pred CccHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence 567788999987655432 3333344444433
No 79
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.1e-15 Score=170.30 Aligned_cols=203 Identities=18% Similarity=0.201 Sum_probs=154.9
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCC--------------
Q 006534 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------------- 391 (641)
Q Consensus 326 ~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~-------------- 391 (641)
..+.+|+||+|++.+++.|+..+. ..+.|.++||+||||+|||++|+.+|..+++
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~-----------~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFT-----------LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 356789999999999998887764 2356778999999999999999999987643
Q ss_pred ----------CeEEeehhhHHHHHhhcchHHHHHHHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHHHH
Q 006534 392 ----------PFISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (641)
Q Consensus 392 ----------pfi~vs~se~v~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln 457 (641)
.++.+++++ ..+...+|++.+.+... ...|++|||+|.|.. ...|
T Consensus 76 C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~---------------~A~N 134 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN---------------SAFN 134 (491)
T ss_pred HHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH---------------HHHH
Confidence 223333321 23456688887776532 345999999998842 2457
Q ss_pred HHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC
Q 006534 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (641)
Q Consensus 458 qLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~ 537 (641)
.|+..|+.. ...+++|.+|+.++.+.+.+++ |. ..+.+.+++.++..+.++..+.+.++.++++ .+..|++.+.
T Consensus 135 aLLK~LEeP--p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~e-AL~lIa~~s~ 208 (491)
T PRK14964 135 ALLKTLEEP--APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEE-SLKLIAENSS 208 (491)
T ss_pred HHHHHHhCC--CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC
Confidence 888888853 3457777778888889999988 55 4789999999999999999998888877766 4788888887
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 006534 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (641)
Q Consensus 538 GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~A 571 (641)
| +.+++.++++.+...+. ..||.+++.+.
T Consensus 209 G-slR~alslLdqli~y~~----~~It~e~V~~l 237 (491)
T PRK14964 209 G-SMRNALFLLEQAAIYSN----NKISEKSVRDL 237 (491)
T ss_pred C-CHHHHHHHHHHHHHhcC----CCCCHHHHHHH
Confidence 6 89999999998876652 36888877664
No 80
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.68 E-value=1.2e-15 Score=177.40 Aligned_cols=213 Identities=21% Similarity=0.291 Sum_probs=147.6
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006534 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v 402 (641)
.+...+.+|+|++|+++.......+...+.. ....++||+||||||||++|+++|+..+.+|+.+++...
T Consensus 19 aek~RP~tldd~vGQe~ii~~~~~L~~~i~~---------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~- 88 (725)
T PRK13341 19 ADRLRPRTLEEFVGQDHILGEGRLLRRAIKA---------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA- 88 (725)
T ss_pred HHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc---------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-
Confidence 3445678899999999988542223222221 123479999999999999999999999999998887521
Q ss_pred HHHhhcchHHHHHHHHHHH-----hcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEe
Q 006534 403 ELYVGMGASRVRDLFARAK-----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~-----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaA 477 (641)
+...+++.+..+. .....+|||||||.+....+ +.|+..++ +..+++|++
T Consensus 89 ------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQ---------------daLL~~lE----~g~IiLI~a 143 (725)
T PRK13341 89 ------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQ---------------DALLPWVE----NGTITLIGA 143 (725)
T ss_pred ------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHH---------------HHHHHHhc----CceEEEEEe
Confidence 2233444454442 12456999999999854321 34555554 345777777
Q ss_pred cCC--CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHh-------cCCCCCCCCCCHHHHHHhCCCCCHHHHHHHH
Q 006534 478 TNR--SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS-------KKELPLAKDIDLGDIASMTTGFTGADLANLV 548 (641)
Q Consensus 478 TN~--pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~-------~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv 548 (641)
|+. ...+++++++ |. ..+.+++++.+++..+++..+. ..++.+++++ ++.|++...| +.+++.+++
T Consensus 144 TTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~dea-L~~La~~s~G-D~R~lln~L 218 (725)
T PRK13341 144 TTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEA-EKHLVDVANG-DARSLLNAL 218 (725)
T ss_pred cCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHH-HHHHHHhCCC-CHHHHHHHH
Confidence 643 3568899998 53 4789999999999999999886 3345565553 7888888865 789999999
Q ss_pred HHHHHHHHhcC--CccccHHHHHHHHHHH
Q 006534 549 NEAALLAGRLN--KVVVEKIDFIHAVERS 575 (641)
Q Consensus 549 ~eAa~~A~r~~--~~~It~~d~~~Al~rv 575 (641)
+.|+..+.... ...|+.+++.+++.+.
T Consensus 219 e~a~~~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 219 ELAVESTPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred HHHHHhcccCCCCceeccHHHHHHHHHHh
Confidence 98775443222 2347888888887664
No 81
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.8e-15 Score=169.94 Aligned_cols=205 Identities=20% Similarity=0.262 Sum_probs=150.4
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----------
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p----------- 392 (641)
....+.+|+||+|++++++.|+..+.. .+.|..+||+||||||||++|+++|..+.+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 445678999999999999999888863 3456668999999999999999999987531
Q ss_pred ------------eEEeehhhHHHHHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHH
Q 006534 393 ------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (641)
Q Consensus 393 ------------fi~vs~se~v~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (641)
++.++++ ...+...++++.+.+.. ..+.||+|||+|.+. ...+
T Consensus 75 sc~~i~~~~h~dv~el~~~------~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls---------------~~a~ 133 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAA------SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS---------------KSAF 133 (504)
T ss_pred hhHHHhcCCCCceEEeccc------ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccC---------------HHHH
Confidence 2223221 12234556766555432 345699999998763 2345
Q ss_pred HHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhC
Q 006534 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (641)
Q Consensus 457 nqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t 536 (641)
+.|+..++.. ...+++|.+|+.+..+.+.+.+ |.. .+.|.+|+.++..+.++..+.+.++.++++ .+..|+..+
T Consensus 134 naLLk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~-Al~~ia~~s 207 (504)
T PRK14963 134 NALLKTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPE-ALQLVARLA 207 (504)
T ss_pred HHHHHHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 7788888743 3456777778888899999987 653 789999999999999999998888777655 478888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006534 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 537 ~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (641)
.| +.+++.++++.+... ...||.+++.+.+
T Consensus 208 ~G-dlR~aln~Lekl~~~-----~~~It~~~V~~~l 237 (504)
T PRK14963 208 DG-AMRDAESLLERLLAL-----GTPVTRKQVEEAL 237 (504)
T ss_pred CC-CHHHHHHHHHHHHhc-----CCCCCHHHHHHHH
Confidence 76 777888877776432 2357877766653
No 82
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.67 E-value=2.2e-15 Score=159.55 Aligned_cols=210 Identities=19% Similarity=0.221 Sum_probs=139.0
Q ss_pred CCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC-----CCeEEeehh
Q 006534 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSAS 399 (641)
Q Consensus 325 ~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg-----~pfi~vs~s 399 (641)
+..+.+|++++|++++++.|..++.. ....++||+||||||||++|+++++++. .+++.++++
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~~------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~ 75 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDS------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA 75 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechh
Confidence 34567899999999999988887741 1223699999999999999999999873 457888887
Q ss_pred hHHHHH-------------hhc-------chHHHHHHHHHHHh-----cCCceEEEcchhhhhhhcCCcccccchhHHHH
Q 006534 400 EFVELY-------------VGM-------GASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQ 454 (641)
Q Consensus 400 e~v~~~-------------vG~-------~~~~vr~lF~~A~~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~ 454 (641)
++.... .+. ....++.+.+.... ..+.+|+|||+|.+...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~--------------- 140 (337)
T PRK12402 76 DFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED--------------- 140 (337)
T ss_pred hhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH---------------
Confidence 764321 010 11233333333322 22459999999987421
Q ss_pred HHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHH
Q 006534 455 TLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIAS 534 (641)
Q Consensus 455 ~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~ 534 (641)
..+.|...++..... ..+|.+++.+..+.+.|.+ |+ ..+.+.+|+.++...+++..+.+.++.++++ .+..++.
T Consensus 141 ~~~~L~~~le~~~~~--~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-al~~l~~ 214 (337)
T PRK12402 141 AQQALRRIMEQYSRT--CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDD-GLELIAY 214 (337)
T ss_pred HHHHHHHHHHhccCC--CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Confidence 113344444433322 3344455556667777876 54 4789999999999999999998888777665 4788888
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 006534 535 MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 535 ~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~ 573 (641)
.+.| +.+++.+.++ ..+. ....||.+++.+++.
T Consensus 215 ~~~g-dlr~l~~~l~---~~~~--~~~~It~~~v~~~~~ 247 (337)
T PRK12402 215 YAGG-DLRKAILTLQ---TAAL--AAGEITMEAAYEALG 247 (337)
T ss_pred HcCC-CHHHHHHHHH---HHHH--cCCCCCHHHHHHHhC
Confidence 7744 5555544444 3332 223689988887654
No 83
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.6e-15 Score=176.49 Aligned_cols=197 Identities=20% Similarity=0.250 Sum_probs=143.6
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-------eEEe
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC 396 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p-------fi~v 396 (641)
++.++.+|+||+|++.+++.|+.++.. .+.+..+||+||||||||++|+++|+++++. ...|
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~~-----------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALTQ-----------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 445678999999999999998887752 2456678999999999999999999998764 1111
Q ss_pred e-hhhHHHH-------Hh---hcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHh
Q 006534 397 S-ASEFVEL-------YV---GMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (641)
Q Consensus 397 s-~se~v~~-------~v---G~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~ 461 (641)
+ |-.+.+. +. ..+...+|++.+.+.. ....|+||||+|.|.. ...|.||.
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~---------------eAqNALLK 141 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR---------------SSFNALLK 141 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH---------------HHHHHHHH
Confidence 1 1111110 00 1233456766655542 2335999999999853 34588899
Q ss_pred hhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCH
Q 006534 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (641)
Q Consensus 462 emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSg 541 (641)
.|+.. ...+++|.+|+.+..|.+.+++ |. .++.|.+++.++..+.|+..+...++.+.++ .+..|+..+.| +.
T Consensus 142 tLEEP--P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~ede-AL~lIA~~S~G-d~ 214 (944)
T PRK14949 142 TLEEP--PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAE-ALTLLAKAANG-SM 214 (944)
T ss_pred HHhcc--CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 88853 3456777778888889999887 54 4789999999999999999887766666544 37888888877 88
Q ss_pred HHHHHHHHHHHH
Q 006534 542 ADLANLVNEAAL 553 (641)
Q Consensus 542 aDL~~Lv~eAa~ 553 (641)
|++.+++..+..
T Consensus 215 R~ALnLLdQala 226 (944)
T PRK14949 215 RDALSLTDQAIA 226 (944)
T ss_pred HHHHHHHHHHHH
Confidence 999999988773
No 84
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.67 E-value=1.3e-15 Score=180.82 Aligned_cols=166 Identities=25% Similarity=0.368 Sum_probs=127.2
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc----------CCCeEEe
Q 006534 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (641)
Q Consensus 327 ~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el----------g~pfi~v 396 (641)
.+-++++++|.++..+.+.+++. .+...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQ------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHh------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 34568899999986555544442 2233579999999999999999999987 7889999
Q ss_pred ehhhHH--HHHhhcchHHHHHHHHHHHh-cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEE
Q 006534 397 SASEFV--ELYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (641)
Q Consensus 397 s~se~v--~~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~Vi 473 (641)
+.+.++ ..|.|..+.+++.+|+.+.. ..++||||||+|.|.+.+.+ .++.+. . +-|...+ .++.+.
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~---~~~~d~-~---~~lkp~l----~~g~l~ 309 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA---DGAMDA-G---NMLKPAL----ARGELH 309 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC---ccchhH-H---HHhcchh----hcCCCe
Confidence 888876 35888999999999998644 56889999999999865432 122221 1 2222222 356799
Q ss_pred EEEecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc
Q 006534 474 VLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (641)
Q Consensus 474 VIaATN~pd-----~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~ 518 (641)
+|+||+..+ .+|+++.| ||+ .|.++.|+.+++..||+.+..+
T Consensus 310 ~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 310 CVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred EEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 999999876 48999999 998 6889999999999999887654
No 85
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.67 E-value=2.3e-15 Score=151.73 Aligned_cols=202 Identities=16% Similarity=0.196 Sum_probs=137.7
Q ss_pred Ccccccccc--CChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhH
Q 006534 327 DTITFADVA--GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (641)
Q Consensus 327 ~~vtf~DV~--G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~ 401 (641)
++.+|++++ +.+++...++++.. +...+.+++|+||||||||+||++++.++ +.+++++++.++
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 457899977 33444444444443 22345689999999999999999999875 778889988776
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCc-EEEEEecCC
Q 006534 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA-VIVLGATNR 480 (641)
Q Consensus 402 v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~-ViVIaATN~ 480 (641)
.+.. . ......+|+|||+|.+.... ...+..++..+ ..... +++++++..
T Consensus 82 ~~~~------------~--~~~~~~~liiDdi~~l~~~~------------~~~L~~~~~~~---~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 82 LLAF------------D--FDPEAELYAVDDVERLDDAQ------------QIALFNLFNRV---RAHGQGALLVAGPAA 132 (227)
T ss_pred HHHH------------h--hcccCCEEEEeChhhcCchH------------HHHHHHHHHHH---HHcCCcEEEEeCCCC
Confidence 4321 1 12245699999999874221 12233333332 22333 344444433
Q ss_pred C--CCCChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 006534 481 S--DVLDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAG 556 (641)
Q Consensus 481 p--d~LDpALlRpgRF--d~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~ 556 (641)
+ ..+.+.|.+ || ...+.+++|+.+++..+++..+.+.++.+++++ ++.|++...| +.++|.++++.....|.
T Consensus 133 ~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~a-l~~L~~~~~g-n~~~l~~~l~~l~~~~~ 208 (227)
T PRK08903 133 PLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEV-PDYLLTHFRR-DMPSLMALLDALDRYSL 208 (227)
T ss_pred HHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 3 235677776 66 579999999999999999988877788887774 8888886655 99999999998665554
Q ss_pred hcCCccccHHHHHHHHH
Q 006534 557 RLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 557 r~~~~~It~~d~~~Al~ 573 (641)
. .+..||...+.+++.
T Consensus 209 ~-~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 209 E-QKRPVTLPLLREMLA 224 (227)
T ss_pred H-hCCCCCHHHHHHHHh
Confidence 4 446899888877764
No 86
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1.2e-15 Score=174.48 Aligned_cols=213 Identities=18% Similarity=0.246 Sum_probs=154.1
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe-------EEe
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISC 396 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pf-------i~v 396 (641)
.+..+.+|+||+|++.+++.|+..+.. .+.+.++||+||+|+|||++|+++|++++++- -.|
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 344667899999999999999888762 35677899999999999999999999876531 111
Q ss_pred e-hhhHHH----------HHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHh
Q 006534 397 S-ASEFVE----------LYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (641)
Q Consensus 397 s-~se~v~----------~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~ 461 (641)
. |..+.. .....+...++++++.+.. ....||||||+|.|.. ...+.||.
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~---------------~A~NALLK 141 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK---------------SAFNAMLK 141 (709)
T ss_pred HHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH---------------HHHHHHHH
Confidence 0 111100 0112344567888776532 2345999999998742 23477888
Q ss_pred hhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCH
Q 006534 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (641)
Q Consensus 462 emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSg 541 (641)
.|+.. ...+.+|.+|+.+..+.+.+++ |+ ..+.|..++.++...+|+..+.+.++.++++ .+..|++.+.| +.
T Consensus 142 tLEEP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~e-AL~~Ia~~A~G-sl 214 (709)
T PRK08691 142 TLEEP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPP-ALQLLGRAAAG-SM 214 (709)
T ss_pred HHHhC--CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHhCC-CH
Confidence 88743 3456777778888888888886 65 3677889999999999999998888777655 47888888876 89
Q ss_pred HHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 006534 542 ADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 542 aDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~ 573 (641)
+++.++++.+.... ...|+.+++...+.
T Consensus 215 RdAlnLLDqaia~g----~g~It~e~V~~lLG 242 (709)
T PRK08691 215 RDALSLLDQAIALG----SGKVAENDVRQMIG 242 (709)
T ss_pred HHHHHHHHHHHHhc----CCCcCHHHHHHHHc
Confidence 99999998877652 34577776665543
No 87
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=2.5e-15 Score=170.96 Aligned_cols=205 Identities=21% Similarity=0.265 Sum_probs=153.4
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----------
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p----------- 392 (641)
....+.+|+||+|++++++.|+..+.. .+.++.+||+||+|||||++|+.+|..++++
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 344667899999999999999888763 2456679999999999999999999987542
Q ss_pred -------------eEEeehhhHHHHHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHH
Q 006534 393 -------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (641)
Q Consensus 393 -------------fi~vs~se~v~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (641)
++.++++ .+.+...++++.+.+.. ....|++|||+|.|.. ..
T Consensus 77 ~~C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~---------------~a 135 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST---------------GA 135 (559)
T ss_pred HHHHHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HH
Confidence 2222221 12345677888877653 2245999999998842 24
Q ss_pred HHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 006534 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (641)
Q Consensus 456 LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~ 535 (641)
.|.|+..++. ....+++|.+|+.++.+++.+++ |.. .+.|.+|+.++...+++..+.+.++.++++ .+..++..
T Consensus 136 ~naLLKtLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~-al~~ia~~ 209 (559)
T PRK05563 136 FNALLKTLEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDE-ALRLIARA 209 (559)
T ss_pred HHHHHHHhcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 5788888874 34567777777888999999987 654 688999999999999999998888777655 37788888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 006534 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (641)
Q Consensus 536 t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~A 571 (641)
+.| +.+++.++++.+...+ ...|+.+++...
T Consensus 210 s~G-~~R~al~~Ldq~~~~~----~~~It~~~V~~v 240 (559)
T PRK05563 210 AEG-GMRDALSILDQAISFG----DGKVTYEDALEV 240 (559)
T ss_pred cCC-CHHHHHHHHHHHHHhc----cCCCCHHHHHHH
Confidence 876 8899999988876553 345777766543
No 88
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.66 E-value=2.4e-15 Score=160.74 Aligned_cols=207 Identities=21% Similarity=0.265 Sum_probs=150.9
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----------
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p----------- 392 (641)
+..++.+|+|++|++++++.|.+.+.. .+.|..+||+||||+|||++|+++|..+.++
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 344678999999999999988887742 3456779999999999999999999987432
Q ss_pred -------------eEEeehhhHHHHHhhcchHHHHHHHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHH
Q 006534 393 -------------FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (641)
Q Consensus 393 -------------fi~vs~se~v~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (641)
++.+++. ...+...++++++.+... ...||+|||+|.+.. ..
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~---------------~~ 133 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAA------SNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK---------------SA 133 (355)
T ss_pred HHHHHHhcCCCCCEEEeecc------ccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH---------------HH
Confidence 2222221 012344577777776532 234999999998842 23
Q ss_pred HHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 006534 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (641)
Q Consensus 456 LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~ 535 (641)
.+.|+..++.. ...+++|.+|+.++.+.+++.+ |+ ..+.+++|+.++..++++..+++.++.++++ .+..++..
T Consensus 134 ~~~Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~-a~~~l~~~ 207 (355)
T TIGR02397 134 FNALLKTLEEP--PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDE-ALELIARA 207 (355)
T ss_pred HHHHHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 46777777643 3456777778888888889887 66 4789999999999999999998877777655 36777887
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 006534 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 536 t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~ 573 (641)
+.| +.+.+.+.++.+...+ + ..|+.+++.+++.
T Consensus 208 ~~g-~~~~a~~~lekl~~~~---~-~~it~~~v~~~~~ 240 (355)
T TIGR02397 208 ADG-SLRDALSLLDQLISFG---N-GNITYEDVNELLG 240 (355)
T ss_pred cCC-ChHHHHHHHHHHHhhc---C-CCCCHHHHHHHhC
Confidence 765 7788888887777654 2 3488888876553
No 89
>PLN03025 replication factor C subunit; Provisional
Probab=99.66 E-value=2e-15 Score=160.38 Aligned_cols=202 Identities=20% Similarity=0.221 Sum_probs=138.5
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCC-----CeEEeeh
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----PFISCSA 398 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~-----pfi~vs~ 398 (641)
++..+.+|+|++|++++.+.|+.++.. ... .++||+||||||||++|+++|.++.. .++.++.
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~-----------~~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARD-----------GNM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhc-----------CCC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 344677999999999999988877642 122 35999999999999999999999732 3566666
Q ss_pred hhHHHHHhhcchHHHHHHHHHHHh-------cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCc
Q 006534 399 SEFVELYVGMGASRVRDLFARAKK-------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA 471 (641)
Q Consensus 399 se~v~~~vG~~~~~vr~lF~~A~~-------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ 471 (641)
++.. +...+++..+.... ..+.||+|||+|.+....+ +.|+..|+.+.. .
T Consensus 73 sd~~------~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq---------------~aL~~~lE~~~~--~ 129 (319)
T PLN03025 73 SDDR------GIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQ---------------QALRRTMEIYSN--T 129 (319)
T ss_pred cccc------cHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHH---------------HHHHHHHhcccC--C
Confidence 5432 12234444332211 2356999999999854321 445555654433 2
Q ss_pred EEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHH
Q 006534 472 VIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEA 551 (641)
Q Consensus 472 ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eA 551 (641)
..+|.++|.+..+.++|++ |. ..+.+++|+.++....++..+++.++.++++ .+..++....| +.+.+.+.++.+
T Consensus 130 t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~-~l~~i~~~~~g-DlR~aln~Lq~~ 204 (319)
T PLN03025 130 TRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPE-GLEAIIFTADG-DMRQALNNLQAT 204 (319)
T ss_pred ceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHH
Confidence 3456677788888899988 54 4789999999999999999998888888766 47888887765 555555555522
Q ss_pred HHHHHhcCCccccHHHHHH
Q 006534 552 ALLAGRLNKVVVEKIDFIH 570 (641)
Q Consensus 552 a~~A~r~~~~~It~~d~~~ 570 (641)
+. +...|+.+++.+
T Consensus 205 ---~~--~~~~i~~~~v~~ 218 (319)
T PLN03025 205 ---HS--GFGFVNQENVFK 218 (319)
T ss_pred ---Hh--cCCCCCHHHHHH
Confidence 21 234577666654
No 90
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.4e-15 Score=171.75 Aligned_cols=211 Identities=16% Similarity=0.237 Sum_probs=151.3
Q ss_pred CCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC------------
Q 006534 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------ 392 (641)
Q Consensus 325 ~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p------------ 392 (641)
+..+.+|+||+|++.+++.|+..+.. .+.+..+||+||+|||||++|+++|+.+++.
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~-----------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p 77 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQ-----------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP 77 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence 34567899999999999999888763 3456678999999999999999999988652
Q ss_pred eEEe-ehhhH--------HHH--HhhcchHHHHHHHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHHHH
Q 006534 393 FISC-SASEF--------VEL--YVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLN 457 (641)
Q Consensus 393 fi~v-s~se~--------v~~--~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Ln 457 (641)
.-.| +|..+ .+. ....+...+|++.+.+... .-.|++|||+|.|... ..|
T Consensus 78 Cg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~---------------a~N 142 (618)
T PRK14951 78 CGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT---------------AFN 142 (618)
T ss_pred CCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH---------------HHH
Confidence 1111 11111 111 0112345677777765432 2349999999998532 347
Q ss_pred HHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC
Q 006534 458 QLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (641)
Q Consensus 458 qLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~ 537 (641)
.||..++. ....+++|.+|+.+..+.+.+++ |. .++.+..++.++..+.|+..+.+.++.++++ .+..|++.+.
T Consensus 143 aLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~-AL~~La~~s~ 216 (618)
T PRK14951 143 AMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQ-ALRLLARAAR 216 (618)
T ss_pred HHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC
Confidence 78888874 33456777777778888888887 54 4889999999999999999988888777655 4788888887
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006534 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 538 GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (641)
| +.+++.++++.+.... ...|+.+++.+.+
T Consensus 217 G-slR~al~lLdq~ia~~----~~~It~~~V~~~L 246 (618)
T PRK14951 217 G-SMRDALSLTDQAIAFG----SGQLQEAAVRQML 246 (618)
T ss_pred C-CHHHHHHHHHHHHHhc----CCCcCHHHHHHHH
Confidence 7 8899999988776553 3457766665543
No 91
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.65 E-value=4.9e-15 Score=155.91 Aligned_cols=254 Identities=26% Similarity=0.369 Sum_probs=162.0
Q ss_pred cccCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC---eEEee
Q 006534 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCS 397 (641)
Q Consensus 322 ~~~~~~~vtf~DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p---fi~vs 397 (641)
+.+...+-+++|.+|+++...+ ..++.. +.. .+ -..++||||||||||+||+.++....-+ |++++
T Consensus 128 LaermRPktL~dyvGQ~hlv~q-~gllrs~ieq--------~~-ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelS 197 (554)
T KOG2028|consen 128 LAERMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQ--------NR-IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELS 197 (554)
T ss_pred hhhhcCcchHHHhcchhhhcCc-chHHHHHHHc--------CC-CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEe
Confidence 3455567789999999987755 222222 111 12 2369999999999999999999988665 78777
Q ss_pred hhhHHHHHhhcchHHHHHHHHHHHhc-----CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcE
Q 006534 398 ASEFVELYVGMGASRVRDLFARAKKE-----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 472 (641)
Q Consensus 398 ~se~v~~~vG~~~~~vr~lF~~A~~~-----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~V 472 (641)
.. ......+|++|++++.. ...|||||||+.+.+.+|+ .||-.++ +..|
T Consensus 198 At-------~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD---------------~fLP~VE----~G~I 251 (554)
T KOG2028|consen 198 AT-------NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQD---------------TFLPHVE----NGDI 251 (554)
T ss_pred cc-------ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhh---------------cccceec----cCce
Confidence 63 34567899999999753 4569999999999877663 2333332 5678
Q ss_pred EEEEec--CCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHh---c--C-CCCCCC------CCCHHHHHHhCCC
Q 006534 473 IVLGAT--NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS---K--K-ELPLAK------DIDLGDIASMTTG 538 (641)
Q Consensus 473 iVIaAT--N~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~---~--~-~l~l~~------dvdl~~LA~~t~G 538 (641)
++|+|| |+.-.|..+|++++| ++.+...+.++...||..... + + ..++.. +--++.++..++|
T Consensus 252 ~lIGATTENPSFqln~aLlSRC~---VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdG 328 (554)
T KOG2028|consen 252 TLIGATTENPSFQLNAALLSRCR---VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDG 328 (554)
T ss_pred EEEecccCCCccchhHHHHhccc---eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCc
Confidence 999887 555689999998544 788888899999999987443 1 1 112222 1126677888877
Q ss_pred CCHHHHHHHHHHHH-HHHHhc---CCccccHHHHHHHHHHHhcchhhhhccCChhHHHHHHHHHH-----HHHHHHhHHh
Q 006534 539 FTGADLANLVNEAA-LLAGRL---NKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEA-----GHAVVGTAVA 609 (641)
Q Consensus 539 fSgaDL~~Lv~eAa-~~A~r~---~~~~It~~d~~~Al~rvi~g~~~~~~~ls~~ek~~va~hEa-----ghAlv~~~l~ 609 (641)
=..+-| |.++.++ +.+.|. .+..++.+|+.+++.+.-.-..+. -.+.=..+.|+|+. ..|-+-| |+
T Consensus 329 DaR~aL-N~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~~~YDr~---Ge~HYntISA~HKSmRG~D~nAslY~-La 403 (554)
T KOG2028|consen 329 DARAAL-NALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSHILYDRA---GEEHYNTISALHKSMRGSDQNASLYW-LA 403 (554)
T ss_pred hHHHHH-HHHHHHHHHHHhhcCCcccceecHHHHHHHHhhccceeccc---chhHHHHHHHHHHhhcCCccchHHHH-HH
Confidence 433333 3333332 222333 356788999999887754322221 12223456777874 2333332 33
Q ss_pred hcC-CCCCcee
Q 006534 610 SLL-PGQPRVE 619 (641)
Q Consensus 610 ~~~-~~~~~v~ 619 (641)
.+| -+.||++
T Consensus 404 RMLegGEdPLY 414 (554)
T KOG2028|consen 404 RMLEGGEDPLY 414 (554)
T ss_pred HHHccCCCcHH
Confidence 444 4556654
No 92
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.65 E-value=1.1e-14 Score=148.57 Aligned_cols=206 Identities=14% Similarity=0.135 Sum_probs=136.2
Q ss_pred Ccccccccc-C-ChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhH
Q 006534 327 DTITFADVA-G-VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (641)
Q Consensus 327 ~~vtf~DV~-G-~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~ 401 (641)
+..+|++.+ | ...+...++++.. . ..+..++|+||||||||+|++++++++ +....+++..+.
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l~~~~~---~---------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAALQNALR---Q---------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred CcCCccccccCccHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 456788877 4 3444444444432 1 123479999999999999999999875 344556665553
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCc-EEEEEecCC
Q 006534 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA-VIVLGATNR 480 (641)
Q Consensus 402 v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~-ViVIaATN~ 480 (641)
... ..++++.... ..+|+|||+|.+..+. ..+..+-.++..+- .+.+ -+++++++.
T Consensus 85 ~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~----------~~~~~lf~l~n~~~---e~g~~~li~ts~~~ 141 (235)
T PRK08084 85 AWF--------VPEVLEGMEQ--LSLVCIDNIECIAGDE----------LWEMAIFDLYNRIL---ESGRTRLLITGDRP 141 (235)
T ss_pred hhh--------hHHHHHHhhh--CCEEEEeChhhhcCCH----------HHHHHHHHHHHHHH---HcCCCeEEEeCCCC
Confidence 221 1122222211 2489999999985322 22233333333321 1222 355666666
Q ss_pred CCC---CChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 006534 481 SDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 481 pd~---LDpALlRpgRFd--~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A 555 (641)
|.. +.|.|.+ |+. .++.+.+|+.+++.++++..+..+++.+++++ ++.|+.+..| +.+.+.++++.....+
T Consensus 142 p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v-~~~L~~~~~~-d~r~l~~~l~~l~~~~ 217 (235)
T PRK08084 142 PRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDV-GRFLLKRLDR-EMRTLFMTLDQLDRAS 217 (235)
T ss_pred hHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhhcC-CHHHHHHHHHHHHHHH
Confidence 654 5789988 764 78999999999999999998877788888886 8889999887 8999999999864343
Q ss_pred HhcCCccccHHHHHHHH
Q 006534 556 GRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 556 ~r~~~~~It~~d~~~Al 572 (641)
. ..+..||...+.+++
T Consensus 218 l-~~~~~it~~~~k~~l 233 (235)
T PRK08084 218 I-TAQRKLTIPFVKEIL 233 (235)
T ss_pred H-hcCCCCCHHHHHHHH
Confidence 3 334558888777765
No 93
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.64 E-value=9.8e-15 Score=154.01 Aligned_cols=206 Identities=19% Similarity=0.270 Sum_probs=134.3
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~ 403 (641)
+...+.+|+|++|++++++.+...+. ..+.|..+||+||||+|||++|++++++.+.+++.+++++ ..
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~ 80 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVK-----------KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CR 80 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHh-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-cc
Confidence 45567899999999999998888875 1345667777999999999999999999999999998876 11
Q ss_pred HHhhcchHHHHHHHHHHH-hcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC
Q 006534 404 LYVGMGASRVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd 482 (641)
.......+........ ...+++|+|||+|.+... +....+. ..++... .++.+|.+||.++
T Consensus 81 --~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~-----------~~~~~L~---~~le~~~--~~~~~Ilt~n~~~ 142 (316)
T PHA02544 81 --IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA-----------DAQRHLR---SFMEAYS--KNCSFIITANNKN 142 (316)
T ss_pred --HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH-----------HHHHHHH---HHHHhcC--CCceEEEEcCChh
Confidence 1111111222111111 134679999999987321 1122333 3344332 3467778999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHh-------cCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 006534 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS-------KKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 483 ~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~-------~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A 555 (641)
.+++++++ ||. .+.++.|+.+++.++++.++. +.+.++.+++ +..++....| |++.+++.....+
T Consensus 143 ~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~a-l~~l~~~~~~----d~r~~l~~l~~~~ 214 (316)
T PHA02544 143 GIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKV-LAALVKKNFP----DFRRTINELQRYA 214 (316)
T ss_pred hchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhcCC----CHHHHHHHHHHHH
Confidence 99999998 875 789999999999877665432 3455554442 5666765543 4555555444443
Q ss_pred HhcCCccccHHHHHH
Q 006534 556 GRLNKVVVEKIDFIH 570 (641)
Q Consensus 556 ~r~~~~~It~~d~~~ 570 (641)
. ...++.+++..
T Consensus 215 ~---~~~i~~~~l~~ 226 (316)
T PHA02544 215 S---TGKIDAGILSE 226 (316)
T ss_pred c---cCCCCHHHHHH
Confidence 2 23466655443
No 94
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=4.4e-15 Score=167.82 Aligned_cols=212 Identities=19% Similarity=0.245 Sum_probs=151.1
Q ss_pred CCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe-------EEee
Q 006534 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISCS 397 (641)
Q Consensus 325 ~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pf-------i~vs 397 (641)
+..+.+|+||+|++++++.|...+.. .+.+..+||+||||+|||++|+++|..+++.. -.|+
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~ 77 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS 77 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 34567899999999999988888753 34566789999999999999999999886531 1110
Q ss_pred -hhhH--------HHH--HhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhh
Q 006534 398 -ASEF--------VEL--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (641)
Q Consensus 398 -~se~--------v~~--~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~e 462 (641)
|..+ .+. -...+...+|++.+.+.. ....|++|||+|.+.. ...|.||..
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~---------------~a~naLLK~ 142 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK---------------SAFNAMLKT 142 (527)
T ss_pred HHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH---------------HHHHHHHHH
Confidence 1000 000 001234567777776643 2235999999998852 234788888
Q ss_pred hcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHH
Q 006534 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (641)
Q Consensus 463 mdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSga 542 (641)
++.. ...+++|.+|+.++.+.+.+++ |. ..+.|..++.++..+.+...+.+.++.++++ .+..|+..+.| +.+
T Consensus 143 LEep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~-al~~la~~s~G-slr 215 (527)
T PRK14969 143 LEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDAT-ALQLLARAAAG-SMR 215 (527)
T ss_pred HhCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHH
Confidence 8753 3456777777778888888877 54 4888999999999999998888777666544 46778888766 889
Q ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 006534 543 DLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 543 DL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~ 573 (641)
++.++++.|... +...|+.+++...+.
T Consensus 216 ~al~lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 216 DALSLLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred HHHHHHHHHHHh----cCCCcCHHHHHHHHC
Confidence 999999888654 345678777766543
No 95
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=6.3e-15 Score=159.18 Aligned_cols=213 Identities=19% Similarity=0.262 Sum_probs=148.2
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhH--
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF-- 401 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~-- 401 (641)
+...+.+|+|++|++++++.+...+.. .+.|.++|||||||+|||++|+++|.++..+.....+..+
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 445678999999999999888777752 2456789999999999999999999987542211111000
Q ss_pred ----HHHHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEE
Q 006534 402 ----VELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (641)
Q Consensus 402 ----v~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~Vi 473 (641)
.+.....+...++.+++.+.. ..+.||+|||+|.+.. ..++.|+..++.. ....+
T Consensus 78 ~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~---------------~~~~~ll~~le~~--~~~~~ 140 (367)
T PRK14970 78 NIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS---------------AAFNAFLKTLEEP--PAHAI 140 (367)
T ss_pred ceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH---------------HHHHHHHHHHhCC--CCceE
Confidence 000111234567777776643 2345999999998742 2346677766642 23445
Q ss_pred EEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q 006534 474 VLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (641)
Q Consensus 474 VIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~ 553 (641)
+|.+|+.+..+.+++.+ |+ ..+.+++|+.++...++...+.+.++.++++ .+..++..+.| +.+.+.+.++....
T Consensus 141 ~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~-al~~l~~~~~g-dlr~~~~~lekl~~ 215 (367)
T PRK14970 141 FILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDD-ALHIIAQKADG-ALRDALSIFDRVVT 215 (367)
T ss_pred EEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 55566677888899987 54 3789999999999999999888888877766 47888887765 77777777777666
Q ss_pred HHHhcCCccccHHHHHHHHH
Q 006534 554 LAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 554 ~A~r~~~~~It~~d~~~Al~ 573 (641)
++. .. ||.++++..+.
T Consensus 216 y~~---~~-it~~~v~~~~~ 231 (367)
T PRK14970 216 FCG---KN-ITRQAVTENLN 231 (367)
T ss_pred hcC---CC-CCHHHHHHHhC
Confidence 542 22 78777766543
No 96
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=7.6e-15 Score=167.00 Aligned_cols=207 Identities=19% Similarity=0.229 Sum_probs=148.3
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC----------
Q 006534 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---------- 392 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p---------- 392 (641)
.+...+.+|+||+|++.+++.|+..+.. .+.+..+||+||||||||++|+++|+.+.+.
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~ 75 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNT 75 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcc
Confidence 3445678999999999999999888852 2445689999999999999999999988653
Q ss_pred --------------eEEeehhhHHHHHhhcchHHHHHHHHHHH----hcCCceEEEcchhhhhhhcCCcccccchhHHHH
Q 006534 393 --------------FISCSASEFVELYVGMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQ 454 (641)
Q Consensus 393 --------------fi~vs~se~v~~~vG~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~ 454 (641)
++.+++.. ..+...++.+.+.+. .....||||||+|.|.. .
T Consensus 76 C~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~---------------~ 134 (624)
T PRK14959 76 CEQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR---------------E 134 (624)
T ss_pred cHHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH---------------H
Confidence 22222210 112344455433332 23345999999999852 2
Q ss_pred HHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHH
Q 006534 455 TLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIAS 534 (641)
Q Consensus 455 ~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~ 534 (641)
..+.|+..|+.. ...+++|.+|+.++.+.+.+++ |+. .+.|..++.++...+|+..+.+.++.++++ .+..|++
T Consensus 135 a~naLLk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~e-al~lIA~ 208 (624)
T PRK14959 135 AFNALLKTLEEP--PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPA-AVRLIAR 208 (624)
T ss_pred HHHHHHHHhhcc--CCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Confidence 347788888753 3467888888888888888887 653 788999999999999999888777767665 4778888
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006534 535 MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 535 ~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (641)
.+.| +.+++.+++++++ + .+...|+.+++..++
T Consensus 209 ~s~G-dlR~Al~lLeqll--~--~g~~~It~d~V~~~l 241 (624)
T PRK14959 209 RAAG-SVRDSMSLLGQVL--A--LGESRLTIDGARGVL 241 (624)
T ss_pred HcCC-CHHHHHHHHHHHH--H--hcCCCcCHHHHHHHh
Confidence 8875 7778878877653 2 244478888776554
No 97
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=6.8e-15 Score=166.11 Aligned_cols=205 Identities=20% Similarity=0.275 Sum_probs=148.1
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----------
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p----------- 392 (641)
+...+.+|+||+|++.+++.|...+.. .+.+..+||+||||+|||++|+++|..+++.
T Consensus 8 ~KyRP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 8 RKYRPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHHCcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 344667899999999999988887752 2456679999999999999999999987641
Q ss_pred -------------eEEeehhhHHHHHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHH
Q 006534 393 -------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (641)
Q Consensus 393 -------------fi~vs~se~v~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (641)
++.+++. ...+...++++.+.+.. ....|++|||+|.+.. ..
T Consensus 77 ~sC~~i~~~~~~dlieidaa------s~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~---------------~a 135 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAA------SRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK---------------QS 135 (546)
T ss_pred HHHHHHhcCCCCceEEeecc------cccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH---------------HH
Confidence 1222211 11233455666665542 2345999999998853 23
Q ss_pred HHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 006534 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (641)
Q Consensus 456 LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~ 535 (641)
.+.||..|+.. ...+++|.+|+.+..+.+.+++ |. ..+++.+++.++....++..+.+.++.++++ .+..++..
T Consensus 136 ~naLLK~LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~-Al~~Ia~~ 209 (546)
T PRK14957 136 FNALLKTLEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQ-SLEYIAYH 209 (546)
T ss_pred HHHHHHHHhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 47788888743 3456666677778888888887 54 5899999999999999999888777766554 47788888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 006534 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (641)
Q Consensus 536 t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~A 571 (641)
+.| +.+++.++++.+...+. ..|+.+++.++
T Consensus 210 s~G-dlR~alnlLek~i~~~~----~~It~~~V~~~ 240 (546)
T PRK14957 210 AKG-SLRDALSLLDQAISFCG----GELKQAQIKQM 240 (546)
T ss_pred cCC-CHHHHHHHHHHHHHhcc----CCCCHHHHHHH
Confidence 865 88999999888775532 45777777764
No 98
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=6.4e-15 Score=167.58 Aligned_cols=212 Identities=20% Similarity=0.210 Sum_probs=149.8
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-------eEEe
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC 396 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p-------fi~v 396 (641)
+...+-+|+||+|++.+++.|+..+.. .+.|..+||+||+|||||++|+++|+.+++. .-.|
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 344677899999999999998888752 3466678999999999999999999987642 1111
Q ss_pred -ehhhHHH----------H--HhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHH
Q 006534 397 -SASEFVE----------L--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 459 (641)
Q Consensus 397 -s~se~v~----------~--~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqL 459 (641)
+|..+.. . -...+...++++.+.+.. ....|++|||+|.|.. ...|.|
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~---------------~A~NAL 138 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT---------------AGFNAL 138 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH---------------HHHHHH
Confidence 1111110 0 001134556666555432 2234999999999853 245788
Q ss_pred HhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCC
Q 006534 460 LTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF 539 (641)
Q Consensus 460 L~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~Gf 539 (641)
|..|+. ....+++|.+|+.++.|.+.+++ | ..++.|..++.++..+.+...+.+.++.++++ .+..++....|
T Consensus 139 LK~LEE--pp~~~~fIL~tte~~kll~TI~S--R-c~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~-al~~Ia~~s~G- 211 (584)
T PRK14952 139 LKIVEE--PPEHLIFIFATTEPEKVLPTIRS--R-THHYPFRLLPPRTMRALIARICEQEGVVVDDA-VYPLVIRAGGG- 211 (584)
T ss_pred HHHHhc--CCCCeEEEEEeCChHhhHHHHHH--h-ceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-
Confidence 888884 34467888888888999999988 5 35899999999999999999998877776554 36677777665
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 006534 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (641)
Q Consensus 540 SgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~A 571 (641)
+.+++.++++.++..+ +...|+.+++...
T Consensus 212 dlR~aln~Ldql~~~~---~~~~It~~~v~~l 240 (584)
T PRK14952 212 SPRDTLSVLDQLLAGA---ADTHVTYQRALGL 240 (584)
T ss_pred CHHHHHHHHHHHHhcc---CCCCcCHHHHHHH
Confidence 8899999998876543 2345666665544
No 99
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.62 E-value=1.1e-14 Score=147.29 Aligned_cols=201 Identities=23% Similarity=0.341 Sum_probs=127.6
Q ss_pred Ccccccccc-CC--hHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEeeh
Q 006534 327 DTITFADVA-GV--DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSA 398 (641)
Q Consensus 327 ~~vtf~DV~-G~--~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el-----g~pfi~vs~ 398 (641)
+..||++.+ |. ..+...++.+.+ ++. .....++||||+|+|||+|.+|+++++ +..++++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~---~~~-------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAE---NPG-------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHH---STT-------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHh---cCC-------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 567899986 42 223333333332 221 123459999999999999999999874 678999999
Q ss_pred hhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEec
Q 006534 399 SEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (641)
Q Consensus 399 se~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaAT 478 (641)
.+|...+...-...-..-|..... ...+|+||++|.+..+. ... ..|+..++.+....+.+|+++.
T Consensus 73 ~~f~~~~~~~~~~~~~~~~~~~~~-~~DlL~iDDi~~l~~~~----------~~q---~~lf~l~n~~~~~~k~li~ts~ 138 (219)
T PF00308_consen 73 EEFIREFADALRDGEIEEFKDRLR-SADLLIIDDIQFLAGKQ----------RTQ---EELFHLFNRLIESGKQLILTSD 138 (219)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHC-TSSEEEEETGGGGTTHH----------HHH---HHHHHHHHHHHHTTSEEEEEES
T ss_pred HHHHHHHHHHHHcccchhhhhhhh-cCCEEEEecchhhcCch----------HHH---HHHHHHHHHHHhhCCeEEEEeC
Confidence 999877654322211122322222 34599999999986432 112 2333333333334556777776
Q ss_pred CCCCC---CChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q 006534 479 NRSDV---LDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (641)
Q Consensus 479 N~pd~---LDpALlRpgRF--d~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~ 553 (641)
..|.. +++.|.+ || ...+.+..|+.++|.+|++..+..+++.+++++ ++.|+.+..+ +.++|..+++.-..
T Consensus 139 ~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v-~~~l~~~~~~-~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 139 RPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEV-IEYLARRFRR-DVRELEGALNRLDA 214 (219)
T ss_dssp S-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHH-HHHHHHHTTS-SHHHHHHHHHHHHH
T ss_pred CCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHH-HHHHHHhhcC-CHHHHHHHHHHHHH
Confidence 66654 5677877 66 568999999999999999999999999988886 7888888765 89999999998776
Q ss_pred HH
Q 006534 554 LA 555 (641)
Q Consensus 554 ~A 555 (641)
.+
T Consensus 215 ~~ 216 (219)
T PF00308_consen 215 YA 216 (219)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 100
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=6e-15 Score=168.44 Aligned_cols=205 Identities=18% Similarity=0.243 Sum_probs=152.1
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----------
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p----------- 392 (641)
+...+.+|+||+|++++++.|...+.. .+.+..+||+||+|+|||++|+++|+.++++
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 344567899999999999999888752 3456778999999999999999999987643
Q ss_pred -------------eEEeehhhHHHHHhhcchHHHHHHHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHH
Q 006534 393 -------------FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (641)
Q Consensus 393 -------------fi~vs~se~v~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (641)
++.+++. ...+...++++.+.+... ...|++|||+|.|.. ..
T Consensus 77 ~~c~~i~~g~~~d~~eid~~------s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~---------------~a 135 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGA------SNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST---------------NA 135 (576)
T ss_pred HHHHHHhcCCCCCeeeeecc------CccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH---------------HH
Confidence 2222211 112345677777666432 224999999998853 23
Q ss_pred HHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 006534 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (641)
Q Consensus 456 LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~ 535 (641)
.|.|+..|+. ....+++|.+|+.++.|.+.+++ |. ..+.|..++.++....+...+.+.++.++++ .+..++..
T Consensus 136 ~naLLk~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~-al~~la~~ 209 (576)
T PRK14965 136 FNALLKTLEE--PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDA-ALALVARK 209 (576)
T ss_pred HHHHHHHHHc--CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHH
Confidence 4788888884 34567888888888999999987 54 3788999999999999998888888777666 47888888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 006534 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (641)
Q Consensus 536 t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~A 571 (641)
+.| +.+++.++++.+..... ..|+.+++...
T Consensus 210 a~G-~lr~al~~Ldqliay~g----~~It~edV~~l 240 (576)
T PRK14965 210 GDG-SMRDSLSTLDQVLAFCG----DAVGDDDVAEL 240 (576)
T ss_pred cCC-CHHHHHHHHHHHHHhcc----CCCCHHHHHHH
Confidence 876 88888888887766542 24777776544
No 101
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.62 E-value=1.7e-14 Score=160.18 Aligned_cols=222 Identities=14% Similarity=0.215 Sum_probs=146.2
Q ss_pred ccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEeehhhHH
Q 006534 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEFV 402 (641)
Q Consensus 328 ~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el-----g~pfi~vs~se~v 402 (641)
..+|++.+--+.....+..+.....+| | ...++++|||++|+|||+|++|+++++ +..++++++.+|.
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~------~-~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~ 183 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNP------G-ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA 183 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCc------C-cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 468888763333222232222222332 1 233569999999999999999999854 5788999999998
Q ss_pred HHHhhcchH---HHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006534 403 ELYVGMGAS---RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 403 ~~~vG~~~~---~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN 479 (641)
..+...-.. .+.. |... ...+.+|+|||++.+..+.. ....+-.++..+ ....+.+|+++..
T Consensus 184 ~~~~~~l~~~~~~~~~-~~~~-~~~~dvLiIDDiq~l~~k~~----------~~e~lf~l~N~~---~~~~k~iIltsd~ 248 (450)
T PRK14087 184 RKAVDILQKTHKEIEQ-FKNE-ICQNDVLIIDDVQFLSYKEK----------TNEIFFTIFNNF---IENDKQLFFSSDK 248 (450)
T ss_pred HHHHHHHHHhhhHHHH-HHHH-hccCCEEEEeccccccCCHH----------HHHHHHHHHHHH---HHcCCcEEEECCC
Confidence 876543221 2222 2111 13456999999998853221 112222223322 2233345555544
Q ss_pred CCC---CCChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCC--CCCCCCCHHHHHHhCCCCCHHHHHHHHHHHH
Q 006534 480 RSD---VLDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKEL--PLAKDIDLGDIASMTTGFTGADLANLVNEAA 552 (641)
Q Consensus 480 ~pd---~LDpALlRpgRF--d~~I~v~~Pd~~eR~~IL~~~l~~~~l--~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa 552 (641)
.|. .+++.|.+ || +..+.+.+|+.++|.+||+..++..++ .+++++ +..|+....| +++.|.++++.+.
T Consensus 249 ~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~ev-l~~Ia~~~~g-d~R~L~gaL~~l~ 324 (450)
T PRK14087 249 SPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEA-INFISNYYSD-DVRKIKGSVSRLN 324 (450)
T ss_pred CHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHH-HHHHHHccCC-CHHHHHHHHHHHH
Confidence 453 45788888 77 567889999999999999999987664 455554 7888888887 9999999999988
Q ss_pred HHHHhcC-CccccHHHHHHHHHHH
Q 006534 553 LLAGRLN-KVVVEKIDFIHAVERS 575 (641)
Q Consensus 553 ~~A~r~~-~~~It~~d~~~Al~rv 575 (641)
..+.... ...||.+.+.+++...
T Consensus 325 ~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 325 FWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHhcccCCCCCCHHHHHHHHhhc
Confidence 6665542 3679999998888765
No 102
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1.5e-14 Score=166.65 Aligned_cols=211 Identities=21% Similarity=0.288 Sum_probs=153.7
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEE---eehhh
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS---CSASE 400 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~---vs~se 400 (641)
...++.+|+||+|++.+++.|+..+.. .+.+..+||+||+|+|||++|+++|..+.++--. -.|..
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 445678999999999999998888852 2456779999999999999999999987653210 11221
Q ss_pred HHHH-------H--h---hcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhc
Q 006534 401 FVEL-------Y--V---GMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (641)
Q Consensus 401 ~v~~-------~--v---G~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd 464 (641)
+... + . ..+...+|++.+.+.. ....|++|||+|.|.. ...+.||..|+
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~---------------~A~NALLKtLE 143 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK---------------SAFNALLKTLE 143 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH---------------HHHHHHHHHhh
Confidence 1110 0 0 1235567888777654 2345999999998842 24578888888
Q ss_pred CCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHH
Q 006534 465 GFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADL 544 (641)
Q Consensus 465 g~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL 544 (641)
. +...+++|.+|+.++.|.+.+++ |+. ++.+.+|+.++...+|+..+.+.++.+.++ .+..+|..+.| +.+++
T Consensus 144 E--PP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~e-Al~~LA~lS~G-slR~A 216 (725)
T PRK07133 144 E--PPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKN-ALKLIAKLSSG-SLRDA 216 (725)
T ss_pred c--CCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHH
Confidence 4 34567778888888999999988 664 889999999999999999888777666554 37778888876 88888
Q ss_pred HHHHHHHHHHHHhcCCccccHHHHHHH
Q 006534 545 ANLVNEAALLAGRLNKVVVEKIDFIHA 571 (641)
Q Consensus 545 ~~Lv~eAa~~A~r~~~~~It~~d~~~A 571 (641)
.++++.+.... ...|+.+++.++
T Consensus 217 lslLekl~~y~----~~~It~e~V~el 239 (725)
T PRK07133 217 LSIAEQVSIFG----NNKITLKNVEEL 239 (725)
T ss_pred HHHHHHHHHhc----cCCCCHHHHHHH
Confidence 88888766543 233777777654
No 103
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1e-14 Score=165.24 Aligned_cols=210 Identities=19% Similarity=0.243 Sum_probs=148.8
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe-----EEeeh
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-----ISCSA 398 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pf-----i~vs~ 398 (641)
+...+.+|+|++|++.+++.|...+. ..+.|.++||+||||+|||++|+++|..+.+.- ..-.|
T Consensus 8 ~KyRP~~F~dIIGQe~iv~~L~~aI~-----------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 8 RKYRPHNFKQIIGQELIKKILVNAIL-----------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 34467789999999999998887764 235567899999999999999999999875310 00011
Q ss_pred hhH-----------HHH--HhhcchHHHHHHHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHh
Q 006534 399 SEF-----------VEL--YVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (641)
Q Consensus 399 se~-----------v~~--~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~ 461 (641)
..+ .+. ....+...+|++.+.+... ...|++|||+|.+... ..+.|+.
T Consensus 77 ~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~---------------A~NaLLK 141 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS---------------AWNALLK 141 (605)
T ss_pred HHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHH---------------HHHHHHH
Confidence 110 000 0012445677777665532 2349999999988421 2367888
Q ss_pred hhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCH
Q 006534 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (641)
Q Consensus 462 emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSg 541 (641)
.|+. +...+++|.+|+.++.|.+.+++ |+. .+.+.+|+.++....++..+.+.+..++++. +..++..+.| +.
T Consensus 142 tLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~ea-l~~La~lS~G-dl 214 (605)
T PRK05896 142 TLEE--PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNA-IDKIADLADG-SL 214 (605)
T ss_pred HHHh--CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-cH
Confidence 7774 33467777788888999999988 654 7899999999999999998887777776653 7778888876 88
Q ss_pred HHHHHHHHHHHHHHHhcCCccccHHHHHH
Q 006534 542 ADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (641)
Q Consensus 542 aDL~~Lv~eAa~~A~r~~~~~It~~d~~~ 570 (641)
+++.++++.+...+ +. .|+.+++.+
T Consensus 215 R~AlnlLekL~~y~---~~-~It~e~V~e 239 (605)
T PRK05896 215 RDGLSILDQLSTFK---NS-EIDIEDINK 239 (605)
T ss_pred HHHHHHHHHHHhhc---CC-CCCHHHHHH
Confidence 88888888865543 22 277766665
No 104
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.62 E-value=1.8e-14 Score=165.82 Aligned_cols=220 Identities=17% Similarity=0.158 Sum_probs=145.2
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc----------CCCeEEeehhhH
Q 006534 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSASEF 401 (641)
Q Consensus 332 ~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el----------g~pfi~vs~se~ 401 (641)
+.|.|.++..++|..++..... +..+...++|+|+||||||++++.+..++ .+.+++++|..+
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 5788898888888777764221 22233345699999999999999998765 255789998543
Q ss_pred HHH----------Hh------h-cchHHHHHHHHHHH--hcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhh
Q 006534 402 VEL----------YV------G-MGASRVRDLFARAK--KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (641)
Q Consensus 402 v~~----------~v------G-~~~~~vr~lF~~A~--~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~e 462 (641)
... .. | .....+..+|.... ....+||+|||||.|.... ..+|..|+..
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~------------QDVLYnLFR~ 895 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT------------QKVLFTLFDW 895 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH------------HHHHHHHHHH
Confidence 221 10 1 12234556666542 2335699999999996432 2345556554
Q ss_pred hcCCCCCCcEEEEEecCC---CCCCChhhhCCCCcce-EEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCC
Q 006534 463 MDGFDSNSAVIVLGATNR---SDVLDPALRRPGRFDR-VVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (641)
Q Consensus 463 mdg~~~~~~ViVIaATN~---pd~LDpALlRpgRFd~-~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~G 538 (641)
.. .....++||+++|. ++.|++.+.+ ||.. .+.|++++.+++.+||+..+......+.+++ +..+|+....
T Consensus 896 ~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdA-IELIArkVAq 970 (1164)
T PTZ00112 896 PT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTA-IQLCARKVAN 970 (1164)
T ss_pred hh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHH-HHHHHHhhhh
Confidence 33 23457999999986 4677888877 5543 4788999999999999999875322344443 6666764442
Q ss_pred C--CHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcc
Q 006534 539 F--TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAG 578 (641)
Q Consensus 539 f--SgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~rvi~g 578 (641)
. ..|..-++|..|+.. .+...|+.+|+.+|++++...
T Consensus 971 ~SGDARKALDILRrAgEi---kegskVT~eHVrkAleeiE~s 1009 (1164)
T PTZ00112 971 VSGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQLFDS 1009 (1164)
T ss_pred cCCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHHhh
Confidence 2 335555666666654 244589999999999876443
No 105
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.61 E-value=1.3e-14 Score=172.44 Aligned_cols=203 Identities=22% Similarity=0.337 Sum_probs=147.1
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc----------CCCeEEe
Q 006534 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (641)
Q Consensus 327 ~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el----------g~pfi~v 396 (641)
.+-.++.++|.++..+.+.+++. .+...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLS------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHh------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 34568899999996555554442 2334578999999999999999999975 6788999
Q ss_pred ehhhHH--HHHhhcchHHHHHHHHHHHh-cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEE
Q 006534 397 SASEFV--ELYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (641)
Q Consensus 397 s~se~v--~~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~Vi 473 (641)
+.+.++ ..|.|..+.+++.+|+.+.. ..|+||||||||.|.+.+... +.. ...+.|...+ .+..+.
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~---~~~----d~~~~Lk~~l----~~g~i~ 304 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE---GAM----DAGNMLKPAL----ARGELH 304 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc---chh----HHHHHhchhh----hcCceE
Confidence 888876 46888899999999998865 458999999999997543211 111 1223333222 356799
Q ss_pred EEEecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC----CCCCCCCCCHHHHHHhCCCC-----
Q 006534 474 VLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIASMTTGF----- 539 (641)
Q Consensus 474 VIaATN~pd-----~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~----~l~l~~dvdl~~LA~~t~Gf----- 539 (641)
+|++|+..+ .+|+++.| ||. .|.++.|+.+++..||+.+..+. ++.+.++ .+...+..+.+|
T Consensus 305 ~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~-~i~~~~~ls~~yi~~r~ 380 (852)
T TIGR03346 305 CIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDP-AIVAAATLSHRYITDRF 380 (852)
T ss_pred EEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHH-HHHHHHHhccccccccC
Confidence 999998763 47999999 997 68999999999999999876553 2223222 355556655554
Q ss_pred CHHHHHHHHHHHHHHHH
Q 006534 540 TGADLANLVNEAALLAG 556 (641)
Q Consensus 540 SgaDL~~Lv~eAa~~A~ 556 (641)
-|...-.++++|+..+.
T Consensus 381 lPdkAidlld~a~a~~~ 397 (852)
T TIGR03346 381 LPDKAIDLIDEAAARIR 397 (852)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 35677788999887654
No 106
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=1.2e-14 Score=170.93 Aligned_cols=211 Identities=21% Similarity=0.181 Sum_probs=147.9
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeE-----Eeeh
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI-----SCSA 398 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi-----~vs~ 398 (641)
.+..+.+|+||+|++.+++.|+..+.. .+.+..+||+||+|||||++|+.+|+.+++.-- +-.|
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 344677999999999999998888752 345667999999999999999999999865210 0011
Q ss_pred hhHHHHHhh---------------cchHHHHHHHHHHH----hcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHH
Q 006534 399 SEFVELYVG---------------MGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 459 (641)
Q Consensus 399 se~v~~~vG---------------~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqL 459 (641)
..+..+..| .+...+|++.+.+. .....|+||||+|.|.. ...|.|
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~---------------~a~NaL 140 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP---------------QGFNAL 140 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH---------------HHHHHH
Confidence 111111101 13445566544432 23445999999999953 344788
Q ss_pred HhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCC
Q 006534 460 LTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF 539 (641)
Q Consensus 460 L~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~Gf 539 (641)
|..|+... ..+++|.+|+.++.|.+.|++ |. .++.|..++.++..++|+..+.+.++.++++ .+..|+....|
T Consensus 141 LK~LEEpP--~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~e-al~lLa~~sgG- 213 (824)
T PRK07764 141 LKIVEEPP--EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPG-VLPLVIRAGGG- 213 (824)
T ss_pred HHHHhCCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-
Confidence 88887543 456777777888889889887 54 4889999999999999999998877776554 36777777766
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccccHHHHHH
Q 006534 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (641)
Q Consensus 540 SgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~ 570 (641)
+.+++.++++..+..+ +...||.+++..
T Consensus 214 dlR~Al~eLEKLia~~---~~~~IT~e~V~a 241 (824)
T PRK07764 214 SVRDSLSVLDQLLAGA---GPEGVTYERAVA 241 (824)
T ss_pred CHHHHHHHHHHHHhhc---CCCCCCHHHHHH
Confidence 8888888888766433 234566665443
No 107
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=3.2e-14 Score=159.38 Aligned_cols=211 Identities=21% Similarity=0.279 Sum_probs=148.3
Q ss_pred CCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCC-------CeEEe-
Q 006534 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISC- 396 (641)
Q Consensus 325 ~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~-------pfi~v- 396 (641)
..++.+|+|++|++.+.+.|+..+.. .+.+..+|||||+|+|||++|+.+|..+++ |+-.|
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 34567899999999999988888752 245567899999999999999999998764 11111
Q ss_pred ehhhHHH-----HH-----hhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhh
Q 006534 397 SASEFVE-----LY-----VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (641)
Q Consensus 397 s~se~v~-----~~-----vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~e 462 (641)
+|..+.. .+ ...+...++.+.+.+.. ....|++|||+|.+.. ...+.|+..
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~---------------~a~naLLk~ 142 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK---------------EAFNALLKT 142 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH---------------HHHHHHHHH
Confidence 1111111 00 11234456666655543 2345999999998842 234677777
Q ss_pred hcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHH
Q 006534 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (641)
Q Consensus 463 mdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSga 542 (641)
++.. ...+++|.+|+.++.+.+++.+ |+. .+.+.+|+.++...+++.++++.++.++++ .+..++..+.| +.+
T Consensus 143 LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~-al~~La~~s~G-~lr 215 (486)
T PRK14953 143 LEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEK-ALDLLAQASEG-GMR 215 (486)
T ss_pred HhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHH
Confidence 7743 3345666666777888888887 654 789999999999999999998888776555 37778888776 788
Q ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006534 543 DLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 543 DL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (641)
++.++++.+...+ ...||.+++.+++
T Consensus 216 ~al~~Ldkl~~~~----~~~It~~~V~~~l 241 (486)
T PRK14953 216 DAASLLDQASTYG----EGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHHHHhc----CCCcCHHHHHHHh
Confidence 8888888876543 3457877777654
No 108
>PRK05642 DNA replication initiation factor; Validated
Probab=99.61 E-value=2.5e-14 Score=145.85 Aligned_cols=180 Identities=16% Similarity=0.221 Sum_probs=128.0
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcC
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRD 441 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~ 441 (641)
..+++|+||+|||||+|++|+++++ +...++++..++.... ..+.+.... ..+|+|||++.+..+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~~ 114 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKAD 114 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCChH
Confidence 4679999999999999999998764 6788889988876531 122222222 24899999998853321
Q ss_pred CcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC---CCChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHH
Q 006534 442 GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD---VLDPALRRPGRF--DRVVMVETPDKIGREAILKVHV 516 (641)
Q Consensus 442 ~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd---~LDpALlRpgRF--d~~I~v~~Pd~~eR~~IL~~~l 516 (641)
.+. .|+..++....+...+|++++..|. .+.+.|.+ || ...+.+..|+.+++..+++..+
T Consensus 115 ----------~~~---~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 115 ----------WEE---ALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred ----------HHH---HHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 122 2333333333445667777776663 33688888 77 4678889999999999999777
Q ss_pred hcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006534 517 SKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 517 ~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (641)
...++.+++++ ++.|+++..+ +.+.|.++++.-...+.. .+..||..-+.+++
T Consensus 180 ~~~~~~l~~ev-~~~L~~~~~~-d~r~l~~~l~~l~~~~l~-~~~~it~~~~~~~L 232 (234)
T PRK05642 180 SRRGLHLTDEV-GHFILTRGTR-SMSALFDLLERLDQASLQ-AQRKLTIPFLKETL 232 (234)
T ss_pred HHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHHHHH-cCCcCCHHHHHHHh
Confidence 77778887775 7888888876 999999999987654433 34568887777665
No 109
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=3e-14 Score=160.35 Aligned_cols=205 Identities=21% Similarity=0.257 Sum_probs=149.9
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----------
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p----------- 392 (641)
+...+.+|+||+|++.+++.|+..+.. .+.|..+|||||+|+|||++|+++|..+.++
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 345678999999999999999888752 3466778999999999999999999987421
Q ss_pred -------------eEEeehhhHHHHHhhcchHHHHHHHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHH
Q 006534 393 -------------FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (641)
Q Consensus 393 -------------fi~vs~se~v~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (641)
++.++++. ..+...++++.+.+... ...|++|||+|.+.. ..
T Consensus 75 ~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~---------------~A 133 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK---------------EA 133 (535)
T ss_pred HHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HH
Confidence 22222110 11245677776654321 124999999998852 34
Q ss_pred HHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 006534 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (641)
Q Consensus 456 LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~ 535 (641)
.|.||..|+... ..+.+|.+|+.+..|.+++++ |. ..+.+.+++.++....++..+.+.++.++++ .+..|+..
T Consensus 134 ~NALLK~LEEpp--~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~-Al~~Ia~~ 207 (535)
T PRK08451 134 FNALLKTLEEPP--SYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPE-ALEILARS 207 (535)
T ss_pred HHHHHHHHhhcC--CceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 578888888653 345666666778999999988 63 5889999999999999999998888777655 47888888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 006534 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (641)
Q Consensus 536 t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~A 571 (641)
..| +.+++.++++.|...+ ...||.+++.+.
T Consensus 208 s~G-dlR~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 208 GNG-SLRDTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred cCC-cHHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 876 8899999998887665 235666666543
No 110
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1e-14 Score=159.62 Aligned_cols=217 Identities=14% Similarity=0.185 Sum_probs=150.0
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeE--------
Q 006534 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI-------- 394 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi-------- 394 (641)
++...+.+|+||+|++.+++.|+..+. ..+.|..+||+||||+|||++|+++|+++.+.-.
T Consensus 7 ~~k~RP~~~~eiiGq~~~~~~L~~~~~-----------~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~ 75 (397)
T PRK14955 7 ARKYRPKKFADITAQEHITRTIQNSLR-----------MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQ 75 (397)
T ss_pred HHhcCCCcHhhccChHHHHHHHHHHHH-----------hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccc
Confidence 345567899999999999998888775 2356778999999999999999999999866310
Q ss_pred --Eee------hhhHHH-------HHhh---cchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHH
Q 006534 395 --SCS------ASEFVE-------LYVG---MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDER 452 (641)
Q Consensus 395 --~vs------~se~v~-------~~vG---~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~ 452 (641)
.-. |..+.. .+.+ .+...++++.+.+.. ....|++|||+|.+...
T Consensus 76 ~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~------------- 142 (397)
T PRK14955 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA------------- 142 (397)
T ss_pred cCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH-------------
Confidence 001 111110 0111 124566666555531 12349999999988531
Q ss_pred HHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHH
Q 006534 453 EQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDI 532 (641)
Q Consensus 453 ~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~L 532 (641)
..+.|+..++.. ....++|.+|+.+..+-+.+.+ |.. .+++.+++.++..+.++..+.+.+..++++ .++.|
T Consensus 143 --~~~~LLk~LEep--~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~-al~~l 214 (397)
T PRK14955 143 --AFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDAD-ALQLI 214 (397)
T ss_pred --HHHHHHHHHhcC--CCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHH
Confidence 235677777633 3345555566667788888877 553 788999999999999998887777677666 37788
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHHHh-cCCccccHHHHHHHH
Q 006534 533 ASMTTGFTGADLANLVNEAALLAGR-LNKVVVEKIDFIHAV 572 (641)
Q Consensus 533 A~~t~GfSgaDL~~Lv~eAa~~A~r-~~~~~It~~d~~~Al 572 (641)
+..+.| +.+.+.+.++.+..++.. .....|+.+++.+.+
T Consensus 215 ~~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 215 GRKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 888866 788888888887766632 234578888877655
No 111
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.3e-14 Score=163.81 Aligned_cols=224 Identities=22% Similarity=0.306 Sum_probs=157.6
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH--------
Q 006534 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-------- 403 (641)
Q Consensus 332 ~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~-------- 403 (641)
.|-.|++++|+++.|.+.-.+.. ......-++|+||||+|||+|++.||..+|.+|+.++...+.+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 47899999999888876553321 1122346889999999999999999999999999998764433
Q ss_pred -HHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCC-------------C
Q 006534 404 -LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-------------N 469 (641)
Q Consensus 404 -~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~-------------~ 469 (641)
.|+|....++-+-..+|....| +++|||||.++.+-.+. - -..||..+|--++ -
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGD-------P----aSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGD-------P----ASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCC-------h----HHHHHhhcCHhhcCchhhccccCccch
Confidence 5899999999999999999999 99999999997654321 1 1445555542111 2
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc-----CCC-----CCCCCCCHHHHHHhCC--
Q 006534 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK-----KEL-----PLAKDIDLGDIASMTT-- 537 (641)
Q Consensus 470 ~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~-----~~l-----~l~~dvdl~~LA~~t~-- 537 (641)
+.|++|||+|..+.++.+|+. |+. .|++.-++.+|..+|.+.|+=. .++ .+.+++ +..|.+...
T Consensus 465 S~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~a-i~~iI~~YTRE 540 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEA-IKDIIRYYTRE 540 (782)
T ss_pred hheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHH-HHHHHHHHhHh
Confidence 479999999999999999999 885 8999999999999999988632 222 222222 333333221
Q ss_pred -CCCH--HHHHHHHHHHHHHHHhcCCc---cccHHHHHHHHHHHhc
Q 006534 538 -GFTG--ADLANLVNEAALLAGRLNKV---VVEKIDFIHAVERSIA 577 (641)
Q Consensus 538 -GfSg--aDL~~Lv~eAa~~A~r~~~~---~It~~d~~~Al~rvi~ 577 (641)
|.-+ ++|..+|+.++..-...... .|+..++.+-+.....
T Consensus 541 AGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~~f 586 (782)
T COG0466 541 AGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGVPVF 586 (782)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCCccc
Confidence 2211 56667777666543332222 5777777776655433
No 112
>PRK08727 hypothetical protein; Validated
Probab=99.60 E-value=2.7e-14 Score=145.51 Aligned_cols=209 Identities=19% Similarity=0.217 Sum_probs=136.8
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH
Q 006534 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (641)
Q Consensus 327 ~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~ 403 (641)
+..+|++.++.++. .+..+..... ......++|+||+|||||+|++|++.++ +...++++..++..
T Consensus 14 ~~~~f~~f~~~~~n--~~~~~~~~~~---------~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~ 82 (233)
T PRK08727 14 SDQRFDSYIAAPDG--LLAQLQALAA---------GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG 82 (233)
T ss_pred CcCChhhccCCcHH--HHHHHHHHHh---------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh
Confidence 45689888765542 2222111111 1223559999999999999999997764 66777777666543
Q ss_pred HHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCC
Q 006534 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (641)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~ 483 (641)
. +.+.++.. ....+|+|||+|.+..... ....+-.++..+. .+..-+|+++...|..
T Consensus 83 ~--------~~~~~~~l--~~~dlLiIDDi~~l~~~~~----------~~~~lf~l~n~~~---~~~~~vI~ts~~~p~~ 139 (233)
T PRK08727 83 R--------LRDALEAL--EGRSLVALDGLESIAGQRE----------DEVALFDFHNRAR---AAGITLLYTARQMPDG 139 (233)
T ss_pred h--------HHHHHHHH--hcCCEEEEeCcccccCChH----------HHHHHHHHHHHHH---HcCCeEEEECCCChhh
Confidence 2 23344333 2345999999998853321 1223333444432 1222244444455654
Q ss_pred C---ChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 006534 484 L---DPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (641)
Q Consensus 484 L---DpALlRpgRF--d~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~ 558 (641)
+ +++|.+ || ...+.+++|+.+++.+|++.++..+++.+++++ ++.|++++.| +.+.+.++++.....+...
T Consensus 140 l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~-~~~La~~~~r-d~r~~l~~L~~l~~~~~~~ 215 (233)
T PRK08727 140 LALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAA-IDWLLTHGER-ELAGLVALLDRLDRESLAA 215 (233)
T ss_pred hhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhCCC-CHHHHHHHHHHHHHHHHHh
Confidence 4 789988 76 568899999999999999998877788887775 8889998875 7777777788766544443
Q ss_pred CCccccHHHHHHHHHH
Q 006534 559 NKVVVEKIDFIHAVER 574 (641)
Q Consensus 559 ~~~~It~~d~~~Al~r 574 (641)
+ ..||...+.+.+..
T Consensus 216 ~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 216 K-RRVTVPFLRRVLEE 230 (233)
T ss_pred C-CCCCHHHHHHHHhh
Confidence 3 46888888777643
No 113
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=2.6e-14 Score=162.54 Aligned_cols=211 Identities=18% Similarity=0.199 Sum_probs=151.8
Q ss_pred CCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-------eEEe-
Q 006534 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC- 396 (641)
Q Consensus 325 ~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p-------fi~v- 396 (641)
...+.+|+||+|++.+++.|+..+.. .+.+..+||+||||+|||++|+++|+.++++ .-.|
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 44667899999999999998888752 3456779999999999999999999988652 1111
Q ss_pred ehhhHHHH-------Hhh---cchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhh
Q 006534 397 SASEFVEL-------YVG---MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (641)
Q Consensus 397 s~se~v~~-------~vG---~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~e 462 (641)
+|..+... +.| .+...++++.+.+.. ....|++|||+|.+.. ...|.||..
T Consensus 78 ~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~---------------~a~naLLK~ 142 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN---------------SAFNALLKT 142 (563)
T ss_pred HHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH---------------HHHHHHHHh
Confidence 11111100 011 223456666544432 3345999999998842 245778888
Q ss_pred hcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHH
Q 006534 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (641)
Q Consensus 463 mdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSga 542 (641)
++. +...+++|.+|+.++.|.+++++ |+. .+.+.+++.++..++++..+.+.++.++++ .+..|+..+.| +.+
T Consensus 143 LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~e-Al~lLa~~s~G-dlR 215 (563)
T PRK06647 143 IEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDE-ALKWIAYKSTG-SVR 215 (563)
T ss_pred hcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHH
Confidence 874 44567777888888899999988 654 789999999999999999988878777665 47788888776 889
Q ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006534 543 DLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 543 DL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (641)
++.++++.+...+ ...|+.+++.+++
T Consensus 216 ~alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 216 DAYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 9999988876553 2357777766644
No 114
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.60 E-value=5e-14 Score=153.18 Aligned_cols=244 Identities=20% Similarity=0.244 Sum_probs=173.5
Q ss_pred CCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEeehh
Q 006534 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSAS 399 (641)
Q Consensus 325 ~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el-----g~pfi~vs~s 399 (641)
-.+..+|++++.-+.-.....-.......|. ..-..++||||.|.|||+|++|+++++ +..+++++..
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g-------~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENPG-------GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhccC-------CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 4567899998766555444444444444431 244569999999999999999999876 3468999999
Q ss_pred hHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006534 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 400 e~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN 479 (641)
+|...++......-.+-|+.-. .-.+++||||+.+.++.. ...+.--++|.+ ....+-+|+++..
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~------~qeefFh~FN~l-------~~~~kqIvltsdr 217 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKER------TQEEFFHTFNAL-------LENGKQIVLTSDR 217 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChh------HHHHHHHHHHHH-------HhcCCEEEEEcCC
Confidence 9988877665554455566655 445999999999975432 122333333433 3345567777777
Q ss_pred CCCC---CChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 006534 480 RSDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (641)
Q Consensus 480 ~pd~---LDpALlRpgRFd--~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~ 554 (641)
.|.. +.+.|.+ ||. ..+.+.+||.+.|..||+..+...++.+++++ +..+|.+... +.++|..+++.....
T Consensus 218 ~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev-~~~la~~~~~-nvReLegaL~~l~~~ 293 (408)
T COG0593 218 PPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEV-LEFLAKRLDR-NVRELEGALNRLDAF 293 (408)
T ss_pred CchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHhhc-cHHHHHHHHHHHHHH
Confidence 7754 4588888 774 57788999999999999999998899998886 7778887764 899999999998888
Q ss_pred HHhcCCccccHHHHHHHHHHHhcchhhhhccCChhHHHHHHHH
Q 006534 555 AGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARH 597 (641)
Q Consensus 555 A~r~~~~~It~~d~~~Al~rvi~g~~~~~~~ls~~ek~~va~h 597 (641)
|...++ .||.+.+.+++.......+ + .......+.+..|+
T Consensus 294 a~~~~~-~iTi~~v~e~L~~~~~~~~-~-itie~I~~~Va~~y 333 (408)
T COG0593 294 ALFTKR-AITIDLVKEILKDLLRAGE-K-ITIEDIQKIVAEYY 333 (408)
T ss_pred HHhcCc-cCcHHHHHHHHHHhhcccc-c-CCHHHHHHHHHHHh
Confidence 866554 7888888888887776544 2 33333344443343
No 115
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=3.8e-14 Score=161.98 Aligned_cols=214 Identities=18% Similarity=0.202 Sum_probs=155.8
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEe------
Q 006534 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC------ 396 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~v------ 396 (641)
..+..+.+|+||+|++.+++.|...+.. .+.|..+||+||+|+|||++|+++|+.+++.....
T Consensus 15 a~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~ 83 (598)
T PRK09111 15 ARKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI 83 (598)
T ss_pred HhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc
Confidence 3455678999999999999998887752 35677899999999999999999999886542111
Q ss_pred -------ehhhHHH--------HH--hhcchHHHHHHHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHH
Q 006534 397 -------SASEFVE--------LY--VGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (641)
Q Consensus 397 -------s~se~v~--------~~--vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (641)
+|..+.+ .. ...+...+|++.+.+... ...|++|||+|.+.. ..
T Consensus 84 ~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~---------------~a 148 (598)
T PRK09111 84 DLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST---------------AA 148 (598)
T ss_pred ccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH---------------HH
Confidence 1111111 00 012456778888776532 245999999998842 23
Q ss_pred HHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 006534 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (641)
Q Consensus 456 LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~ 535 (641)
.|.||..|+... ..+++|.+|+.++.+.+.+++ |. ..+.+..|+.++...+++..+.+.++.++++ .+..|+..
T Consensus 149 ~naLLKtLEePp--~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~e-Al~lIa~~ 222 (598)
T PRK09111 149 FNALLKTLEEPP--PHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDE-ALALIARA 222 (598)
T ss_pred HHHHHHHHHhCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 577888887433 346666677777788888887 54 4789999999999999999998887777655 47778888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 006534 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 536 t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~ 573 (641)
+.| +.+++.++++.+.... ...||.+++...+.
T Consensus 223 a~G-dlr~al~~Ldkli~~g----~g~It~e~V~~llg 255 (598)
T PRK09111 223 AEG-SVRDGLSLLDQAIAHG----AGEVTAEAVRDMLG 255 (598)
T ss_pred cCC-CHHHHHHHHHHHHhhc----CCCcCHHHHHHHhC
Confidence 876 8899999998876543 34688888876653
No 116
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=5.3e-14 Score=156.41 Aligned_cols=212 Identities=21% Similarity=0.241 Sum_probs=145.6
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe--------EE
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF--------IS 395 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pf--------i~ 395 (641)
+...+.+|+||+|++.+++.|+..+.. .+.|..+|||||||+|||++|+++|..+.++- ..
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 444678999999999999988887752 34567899999999999999999999875421 00
Q ss_pred -eehhhHHHH-------Hhh---cchHHHHHHHHHHH----hcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHH
Q 006534 396 -CSASEFVEL-------YVG---MGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (641)
Q Consensus 396 -vs~se~v~~-------~vG---~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL 460 (641)
.+|..+... +.| .+...++++-+... .....||+|||+|.+.. ...+.|+
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~---------------~~~n~LL 142 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK---------------EAFNSLL 142 (451)
T ss_pred cHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH---------------HHHHHHH
Confidence 011111100 011 12344554443332 23456999999998852 2347788
Q ss_pred hhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCC
Q 006534 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (641)
Q Consensus 461 ~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfS 540 (641)
..|+.. ...+++|.+|+.+..|.+.+.+ |.. .+++..++.++....++..+.+.++.++++ .+..|+..+.| +
T Consensus 143 k~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~-al~~L~~~s~g-d 215 (451)
T PRK06305 143 KTLEEP--PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSRE-ALLPIARAAQG-S 215 (451)
T ss_pred HHhhcC--CCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-C
Confidence 888753 3466777777888899999988 653 789999999999999998888777777555 47788888865 6
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006534 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 541 gaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (641)
.+++.++++...... + ..|+.+++.+++
T Consensus 216 lr~a~~~Lekl~~~~---~-~~It~~~V~~l~ 243 (451)
T PRK06305 216 LRDAESLYDYVVGLF---P-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHHHHHHhc---c-CCcCHHHHHHHH
Confidence 777777777655432 2 337777766554
No 117
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.3e-14 Score=163.03 Aligned_cols=165 Identities=25% Similarity=0.394 Sum_probs=131.3
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH--------
Q 006534 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-------- 403 (641)
Q Consensus 332 ~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~-------- 403 (641)
+|-.|++++|+++.|++.--+- .|....+-++|+||||+|||+++|+||..+|..|+.++...+.+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kL------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKL------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhh------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 5789999999999887765221 13345677889999999999999999999999999998654433
Q ss_pred -HHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC-------------CC
Q 006534 404 -LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-------------SN 469 (641)
Q Consensus 404 -~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~-------------~~ 469 (641)
.|+|....++-+.++......| +++|||||.++..-++. - . ..||..+|--+ .-
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGD-------P-a---sALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGD-------P-A---SALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCC-------h-H---HHHHHhcChhhccchhhhccccccch
Confidence 5899999999999999999999 99999999998422211 1 1 34444444211 12
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHh
Q 006534 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS 517 (641)
Q Consensus 470 ~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~ 517 (641)
+.|++|||.|..+.|+++|+. |+. .|+++-+..++...|.+.|+-
T Consensus 553 SkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 479999999999999999998 885 899999999999999998874
No 118
>PRK06620 hypothetical protein; Validated
Probab=99.58 E-value=3.7e-14 Score=142.94 Aligned_cols=199 Identities=15% Similarity=0.217 Sum_probs=130.8
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCC-CCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH
Q 006534 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARP-PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (641)
Q Consensus 326 ~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~-pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~ 404 (641)
.+..+|++++--+.-......+..+...+ +..+ -+.++||||||||||+|++++++..+..++. .....
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~~-- 79 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQCGF------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFFN-- 79 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHHcc------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhhc--
Confidence 35668888765443333333332222211 1122 1679999999999999999999988764432 11110
Q ss_pred HhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCC-
Q 006534 405 YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV- 483 (641)
Q Consensus 405 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~- 483 (641)
.+.+ ...++|+|||||.+. . ..+-.++..+ ..++..+||+++..|..
T Consensus 80 ---------~~~~-----~~~d~lliDdi~~~~-----------~----~~lf~l~N~~---~e~g~~ilits~~~p~~l 127 (214)
T PRK06620 80 ---------EEIL-----EKYNAFIIEDIENWQ-----------E----PALLHIFNII---NEKQKYLLLTSSDKSRNF 127 (214)
T ss_pred ---------hhHH-----hcCCEEEEeccccch-----------H----HHHHHHHHHH---HhcCCEEEEEcCCCcccc
Confidence 1111 123599999999441 1 1222333332 23455788888866653
Q ss_pred -CChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCC
Q 006534 484 -LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (641)
Q Consensus 484 -LDpALlRpgRFd--~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~ 560 (641)
+ ++|++ |+. .++.+..|+.+++..+++.++...++.+++++ ++.|+.+..| +.+.+.++++.....+.. .+
T Consensus 128 ~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev-~~~L~~~~~~-d~r~l~~~l~~l~~~~~~-~~ 201 (214)
T PRK06620 128 TL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQI-IDFLLVNLPR-EYSKIIEILENINYFALI-SK 201 (214)
T ss_pred ch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHccC-CHHHHHHHHHHHHHHHHH-cC
Confidence 5 78887 763 57899999999999999999887788888875 8889998876 899999999986544443 33
Q ss_pred ccccHHHHHHHH
Q 006534 561 VVVEKIDFIHAV 572 (641)
Q Consensus 561 ~~It~~d~~~Al 572 (641)
..||...+.+++
T Consensus 202 ~~it~~~~~~~l 213 (214)
T PRK06620 202 RKITISLVKEVL 213 (214)
T ss_pred CCCCHHHHHHHh
Confidence 568888877765
No 119
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.58 E-value=7e-14 Score=146.82 Aligned_cols=205 Identities=23% Similarity=0.260 Sum_probs=138.4
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC-----CCeEEeeh
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSA 398 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg-----~pfi~vs~ 398 (641)
+...+.+|+|++|++++++.|...+.. .. ..++||+||||||||++++++++++. .+++.+++
T Consensus 9 ~kyrP~~~~~~~g~~~~~~~l~~~i~~-----------~~-~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~ 76 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIVERLKSYVKE-----------KN-MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA 76 (319)
T ss_pred hhhCCCcHHHhcCcHHHHHHHHHHHhC-----------CC-CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc
Confidence 344567999999999999988877642 11 23589999999999999999999863 34555554
Q ss_pred hhHHHHHhhcchHHHHHHHHHHHh------cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcE
Q 006534 399 SEFVELYVGMGASRVRDLFARAKK------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 472 (641)
Q Consensus 399 se~v~~~vG~~~~~vr~lF~~A~~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~V 472 (641)
++-. +...+++.+..... ..+.+|+|||+|.+... ..+.|+..++..... .
T Consensus 77 ~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~---------------~~~~L~~~le~~~~~--~ 133 (319)
T PRK00440 77 SDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD---------------AQQALRRTMEMYSQN--T 133 (319)
T ss_pred cccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH---------------HHHHHHHHHhcCCCC--C
Confidence 3221 11122222222211 22459999999988422 123455555544433 3
Q ss_pred EEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHH
Q 006534 473 IVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAA 552 (641)
Q Consensus 473 iVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa 552 (641)
.+|.++|.+..+.+++.+ |+. .+.+++|+.++...+++.++.+.++.+.++ .+..++..+.| +.+.+.+.++.++
T Consensus 134 ~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~-al~~l~~~~~g-d~r~~~~~l~~~~ 208 (319)
T PRK00440 134 RFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDD-ALEAIYYVSEG-DMRKAINALQAAA 208 (319)
T ss_pred eEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 455566777777777877 664 689999999999999999998888777666 48888888765 6666666666544
Q ss_pred HHHHhcCCccccHHHHHHHHH
Q 006534 553 LLAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 553 ~~A~r~~~~~It~~d~~~Al~ 573 (641)
.. ...||.+++..++.
T Consensus 209 ~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 209 AT-----GKEVTEEAVYKITG 224 (319)
T ss_pred Hc-----CCCCCHHHHHHHhC
Confidence 32 35688888877654
No 120
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.58 E-value=2.2e-14 Score=168.55 Aligned_cols=219 Identities=20% Similarity=0.280 Sum_probs=147.6
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH--------
Q 006534 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-------- 403 (641)
Q Consensus 332 ~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~-------- 403 (641)
+|..|++++|+.+.+.+...... +......++|+||||+|||++++++|+.++.+|+.++.+...+
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 35999999999998877653321 1123446999999999999999999999999999887654322
Q ss_pred -HHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcC-----CC--------CC
Q 006534 404 -LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FD--------SN 469 (641)
Q Consensus 404 -~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg-----~~--------~~ 469 (641)
.|.|.....+...+..+....| ||+|||||.+....++ .....|+..+|. |. .-
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g-----------~~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG-----------DPASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC-----------CHHHHHHHHhccccEEEEecccccccccC
Confidence 3566666666666766655556 8999999999764321 122455555552 11 12
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC----------CCCCCCCCCHHHHHH-hCCC
Q 006534 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----------ELPLAKDIDLGDIAS-MTTG 538 (641)
Q Consensus 470 ~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~----------~l~l~~dvdl~~LA~-~t~G 538 (641)
+++++|||+|.. .|+++|++ ||. .|.+..++.++..+|.+.++..+ .+.+.+++ +..|++ .+..
T Consensus 464 s~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~a-i~~ii~~yt~e 538 (784)
T PRK10787 464 SDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSA-IIGIIRYYTRE 538 (784)
T ss_pred CceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHH-HHHHHHhCCcc
Confidence 679999999987 59999998 995 89999999999999999888421 11222222 444543 2333
Q ss_pred CCHHHHHHHHHHHHHHHHh----cC---CccccHHHHHHHHH
Q 006534 539 FTGADLANLVNEAALLAGR----LN---KVVVEKIDFIHAVE 573 (641)
Q Consensus 539 fSgaDL~~Lv~eAa~~A~r----~~---~~~It~~d~~~Al~ 573 (641)
+-.|.|+.+++..+..+.. .+ ...|+.+++.+.+.
T Consensus 539 ~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 539 AGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLG 580 (784)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhC
Confidence 3346666666554433222 21 24678888776664
No 121
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.58 E-value=9.4e-14 Score=146.25 Aligned_cols=98 Identities=20% Similarity=0.245 Sum_probs=84.1
Q ss_pred EEEEecCC------------CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCC
Q 006534 473 IVLGATNR------------SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (641)
Q Consensus 473 iVIaATN~------------pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfS 540 (641)
++|.|||+ |.-++..|+. |. ..|...+++.++.++|++..+...++.++++ .++.|+..-..-|
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~-Ale~L~~ig~etS 397 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDD-ALEYLTDIGEETS 397 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHH-HHHHHHhhchhhh
Confidence 77778886 6778888887 65 3677788999999999999999888888877 4888888877778
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 006534 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (641)
Q Consensus 541 gaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~r 574 (641)
-+...+|+.-|...|.+++...|..+|+++|.+-
T Consensus 398 LRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 398 LRYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred HHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 8999999999999999999999999999998653
No 122
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.57 E-value=1.4e-14 Score=150.15 Aligned_cols=195 Identities=23% Similarity=0.234 Sum_probs=139.1
Q ss_pred cccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC------eEE
Q 006534 322 VSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------FIS 395 (641)
Q Consensus 322 ~~~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p------fi~ 395 (641)
..++..+-+|+|++|++.+.+.|...+.. +.-.++|||||||||||+.|+++|.+++.| +..
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 34666788999999999999999988864 223469999999999999999999998762 222
Q ss_pred eehhhHHHHHhhcchHHHHHHHHHHHh------cCC----ceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcC
Q 006534 396 CSASEFVELYVGMGASRVRDLFARAKK------EAP----SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 465 (641)
Q Consensus 396 vs~se~v~~~vG~~~~~vr~lF~~A~~------~aP----~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg 465 (641)
.+.++....-+ ...++ .-|.+... ..| .|++|||.|.+....+ +.|.+.|+.
T Consensus 94 lnaSderGisv--vr~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq---------------~aLrr~mE~ 155 (346)
T KOG0989|consen 94 LNASDERGISV--VREKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQ---------------AALRRTMED 155 (346)
T ss_pred hcccccccccc--hhhhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHH---------------HHHHHHHhc
Confidence 23333221111 11111 11333222 122 4999999999964433 667788886
Q ss_pred CCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHH
Q 006534 466 FDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLA 545 (641)
Q Consensus 466 ~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~ 545 (641)
+.. .+++|..||..+.|.+.+.+ |-. .+.|+....+.....|+..+.+.++++++++ ++.|+..++| +-++..
T Consensus 156 ~s~--~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~a-l~~I~~~S~G-dLR~Ai 228 (346)
T KOG0989|consen 156 FSR--TTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDA-LKLIAKISDG-DLRRAI 228 (346)
T ss_pred ccc--ceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCC-cHHHHH
Confidence 543 56778889999999988887 543 5678888888888899999999999988774 8889998877 666666
Q ss_pred HHHHHHHH
Q 006534 546 NLVNEAAL 553 (641)
Q Consensus 546 ~Lv~eAa~ 553 (641)
..++.+..
T Consensus 229 t~Lqsls~ 236 (346)
T KOG0989|consen 229 TTLQSLSL 236 (346)
T ss_pred HHHHHhhc
Confidence 66666654
No 123
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.57 E-value=4.7e-14 Score=154.89 Aligned_cols=217 Identities=29% Similarity=0.355 Sum_probs=134.8
Q ss_pred ccCChHHHHHHHHHHHH----hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH-HHhhc
Q 006534 334 VAGVDEAKEELEEIVEF----LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVGM 408 (641)
Q Consensus 334 V~G~~e~K~~L~eiv~~----L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~-~~vG~ 408 (641)
|+|++++|+.|...+.. +........-......++||+||||||||++|+++|..+++||+.++++.+.+ .|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 89999999999766632 11110000001123478999999999999999999999999999999988764 47776
Q ss_pred chHH-HHHHHHHH----HhcCCceEEEcchhhhhhhcCCcccccchh-HHHHHHHHHHhhhcCCC-----------CCCc
Q 006534 409 GASR-VRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSND-EREQTLNQLLTEMDGFD-----------SNSA 471 (641)
Q Consensus 409 ~~~~-vr~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~-e~~~~LnqLL~emdg~~-----------~~~~ 471 (641)
.... +..++..+ ....++||||||||.+..+.++.. ...+ ..+.+.+.||..|++-. ....
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~--~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~ 230 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPS--ITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQE 230 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCC--cCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCC
Confidence 5443 34444332 234678999999999987643210 1111 11345567777776431 1123
Q ss_pred EEEEEecCCCC----------------------------------------------------CCChhhhCCCCcceEEE
Q 006534 472 VIVLGATNRSD----------------------------------------------------VLDPALRRPGRFDRVVM 499 (641)
Q Consensus 472 ViVIaATN~pd----------------------------------------------------~LDpALlRpgRFd~~I~ 499 (641)
.++|.|+|... -+.|+++ ||+|..+.
T Consensus 231 ~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~ 308 (412)
T PRK05342 231 FIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVAT 308 (412)
T ss_pred eEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeee
Confidence 55666655400 0234444 49999999
Q ss_pred ecCCCHHHHHHHHHH----HH-------hcCCCC--CCCCCCHHHHHHh--CCCCCHHHHHHHHHHHHHHH
Q 006534 500 VETPDKIGREAILKV----HV-------SKKELP--LAKDIDLGDIASM--TTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 500 v~~Pd~~eR~~IL~~----~l-------~~~~l~--l~~dvdl~~LA~~--t~GfSgaDL~~Lv~eAa~~A 555 (641)
+.+.+.++..+|+.. .+ ..+++. ++++ .++.|++. ..++-.+.|+.++++...-.
T Consensus 309 f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~-al~~Ia~~~~~~~~GAR~Lrriie~~l~~~ 378 (412)
T PRK05342 309 LEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDE-ALEAIAKKAIERKTGARGLRSILEEILLDV 378 (412)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHH-HHHHHHHhCCCCCCCCchHHHHHHHHhHHH
Confidence 999999999999873 22 222332 2333 25566664 33445577777777655443
No 124
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.57 E-value=3.5e-14 Score=155.18 Aligned_cols=188 Identities=21% Similarity=0.326 Sum_probs=126.6
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeE------Ee-ehhhHH
Q 006534 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI------SC-SASEFV 402 (641)
Q Consensus 330 tf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi------~v-s~se~v 402 (641)
.|++|+|++.+++.|++.+..-+.+ +...+.+.|.++||+||||+|||++|+++|+.+.+..- .| +|..+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~--~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD--VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc--ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 5899999999999999999864331 23345567889999999999999999999998654310 00 000110
Q ss_pred H----------H-HhhcchHHHHHHHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC
Q 006534 403 E----------L-YVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD 467 (641)
Q Consensus 403 ~----------~-~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~ 467 (641)
. . -...+...+|++++.+... ...|+||||+|.+... ..|.||..|+...
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~---------------aanaLLk~LEep~ 145 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER---------------AANALLKAVEEPP 145 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH---------------HHHHHHHHhhcCC
Confidence 0 0 0112345688888877642 3459999999999532 2377888887543
Q ss_pred CCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHH
Q 006534 468 SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLA 545 (641)
Q Consensus 468 ~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~ 545 (641)
. ..++|+ +|+.++.+.|.+++ |. ..+.|++|+.++..++|.... + +.++ ....++..+.|..+..+.
T Consensus 146 ~-~~~fIL-~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~--~~~~-~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 146 P-RTVWLL-CAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---G--VDPE-TARRAARASQGHIGRARR 212 (394)
T ss_pred C-CCeEEE-EECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---C--CCHH-HHHHHHHHcCCCHHHHHH
Confidence 2 334444 44448899999998 65 489999999998877776322 2 2222 356778888886654443
No 125
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.2e-13 Score=158.66 Aligned_cols=209 Identities=19% Similarity=0.233 Sum_probs=147.0
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEE------e-
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS------C- 396 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~------v- 396 (641)
++.++.+|++++|++++++.|...+.. .+.+.++||+||+|+|||++|+++|+.+++.... |
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~-----------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALIS-----------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 445668899999999999999888863 2345679999999999999999999998652110 0
Q ss_pred ehhh---H--------H--HHHhhcchHHHHHHHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHH
Q 006534 397 SASE---F--------V--ELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 459 (641)
Q Consensus 397 s~se---~--------v--~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqL 459 (641)
.|.. + . +.....+...+|++++.+... ...|++|||+|.|.. ...+.|
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~---------------~a~naL 141 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST---------------AAFNAL 141 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH---------------HHHHHH
Confidence 1110 0 0 011224556788888776532 235999999998842 245788
Q ss_pred HhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCC
Q 006534 460 LTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF 539 (641)
Q Consensus 460 L~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~Gf 539 (641)
|..|+. ....+++|.+|+.++.+.+.+++ |. ..+.|..++.++....+...+.+.++.+.++. +..+++.+.|
T Consensus 142 LK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~a-l~~La~~s~G- 214 (620)
T PRK14948 142 LKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEA-LTLVAQRSQG- 214 (620)
T ss_pred HHHHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCC-
Confidence 888884 33457777777888888889887 55 47889999998888888888877666666553 7778888876
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccccHHHHHH
Q 006534 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (641)
Q Consensus 540 SgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~ 570 (641)
+.+++.++++...++. ..|+.+++.+
T Consensus 215 ~lr~A~~lLeklsL~~-----~~It~e~V~~ 240 (620)
T PRK14948 215 GLRDAESLLDQLSLLP-----GPITPEAVWD 240 (620)
T ss_pred CHHHHHHHHHHHHhcc-----CCCCHHHHHH
Confidence 6677777777654431 2355555443
No 126
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=8.8e-14 Score=159.33 Aligned_cols=216 Identities=16% Similarity=0.237 Sum_probs=150.2
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeE---------
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI--------- 394 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi--------- 394 (641)
...++.+|+||+|++.+++.|+..+. ..+.+.++||+||+|||||++|+++|+.+.+.--
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~-----------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLR-----------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 34467799999999999999888764 2356778999999999999999999999876310
Q ss_pred ---Ee----ehhhHHH-------HHhh---cchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHH
Q 006534 395 ---SC----SASEFVE-------LYVG---MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDERE 453 (641)
Q Consensus 395 ---~v----s~se~v~-------~~vG---~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~ 453 (641)
.| +|..+.. .+.+ .+...++++.+.+.. ....|++|||+|.+..
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~--------------- 141 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST--------------- 141 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH---------------
Confidence 00 1111110 0111 124567776655532 2234999999998842
Q ss_pred HHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHH
Q 006534 454 QTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIA 533 (641)
Q Consensus 454 ~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA 533 (641)
...+.|+..|+... ..+++|.+|+.++.|.+.+.+ |. ..+.+..++.++....+...+.+.++.++++ .++.|+
T Consensus 142 ~a~naLLK~LEePp--~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~e-al~~La 215 (620)
T PRK14954 142 AAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDAD-ALQLIA 215 (620)
T ss_pred HHHHHHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Confidence 22477888887533 345555566667888888887 43 4899999999999989988887777777665 477888
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHH-hcCCccccHHHHHHHH
Q 006534 534 SMTTGFTGADLANLVNEAALLAG-RLNKVVVEKIDFIHAV 572 (641)
Q Consensus 534 ~~t~GfSgaDL~~Lv~eAa~~A~-r~~~~~It~~d~~~Al 572 (641)
..+.| +.+++.+.++....++. ......|+.+++.+.+
T Consensus 216 ~~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 216 RKAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 88866 77888888887766652 1234568887776655
No 127
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.55 E-value=1.3e-13 Score=140.43 Aligned_cols=195 Identities=23% Similarity=0.358 Sum_probs=139.1
Q ss_pred CCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhH
Q 006534 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (641)
Q Consensus 325 ~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~ 401 (641)
..+.+.+++++|.++.|+.|.+-...+.. ..+..++||+|++|||||+++||+..+. |..++.+...++
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 34678999999999999999877655432 3578899999999999999999999865 788999988776
Q ss_pred HHHHhhcchHHHHHHHHHHHh-cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC--CCCCcEEEEEec
Q 006534 402 VELYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--DSNSAVIVLGAT 478 (641)
Q Consensus 402 v~~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~--~~~~~ViVIaAT 478 (641)
.. +.++++..+. ..+-|||+|++- + . .. +.....|-..|||- ..+.+|++.||+
T Consensus 92 ~~---------l~~l~~~l~~~~~kFIlf~DDLs-F-e---------~~---d~~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 92 GD---------LPELLDLLRDRPYKFILFCDDLS-F-E---------EG---DTEYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred cc---------HHHHHHHHhcCCCCEEEEecCCC-C-C---------CC---cHHHHHHHHHhcCccccCCCcEEEEEec
Confidence 43 4455555542 345699999963 1 1 11 12234555556653 345689999999
Q ss_pred CCCCCCChhh---------------------hCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCC-CCHH--HHHH
Q 006534 479 NRSDVLDPAL---------------------RRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-IDLG--DIAS 534 (641)
Q Consensus 479 N~pd~LDpAL---------------------lRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~d-vdl~--~LA~ 534 (641)
|+-+.+++.. --..||...|.|..|+.++-.+|++.++.+.+++++.+ .... ..|.
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~ 228 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWAL 228 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9854333222 11239999999999999999999999999888877642 1112 2244
Q ss_pred hCCCCCHHHHHHHHHH
Q 006534 535 MTTGFTGADLANLVNE 550 (641)
Q Consensus 535 ~t~GfSgaDL~~Lv~e 550 (641)
...|.||+-..+.++.
T Consensus 229 ~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 229 RRGGRSGRTARQFIDD 244 (249)
T ss_pred HcCCCCHHHHHHHHHH
Confidence 5567788877777654
No 128
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.9e-13 Score=156.60 Aligned_cols=213 Identities=19% Similarity=0.228 Sum_probs=146.7
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeE-----Eee
Q 006534 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI-----SCS 397 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi-----~vs 397 (641)
+++..+.+|+||+|++.+++.|+..+.. .+.+..+||+||||+|||++|+++|+.+++..- .|.
T Consensus 7 ~~kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 7 YRKWRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 3455678999999999999998887752 234567899999999999999999998764221 111
Q ss_pred -hh---hHHHH----------HhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHH
Q 006534 398 -AS---EFVEL----------YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 459 (641)
Q Consensus 398 -~s---e~v~~----------~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqL 459 (641)
|. .+... ....+...++++.+.+.. ....||+|||+|.|.. ..++.|
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~---------------~a~naL 140 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST---------------AAFNAL 140 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH---------------HHHHHH
Confidence 11 11100 011233455665554432 2234999999998842 235778
Q ss_pred HhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCC
Q 006534 460 LTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF 539 (641)
Q Consensus 460 L~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~Gf 539 (641)
+..++... ..+++|.+++..+.+.+.+.+ |.. .+.|..++..+...+++..+.+.++.++++ .+..|+..+.|
T Consensus 141 Lk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~e-al~~La~~s~G- 213 (585)
T PRK14950 141 LKTLEEPP--PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPG-ALEAIARAATG- 213 (585)
T ss_pred HHHHhcCC--CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-
Confidence 88777543 345666666777778888877 553 788999999999999999888877777665 37788888876
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006534 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 540 SgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (641)
+.+++.+.++....+ ....|+.+++.+.+
T Consensus 214 dlr~al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 214 SMRDAENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred CHHHHHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 888888888875543 23458887766543
No 129
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.55 E-value=8.2e-14 Score=155.41 Aligned_cols=197 Identities=22% Similarity=0.311 Sum_probs=153.9
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-------eEEee-
Q 006534 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISCS- 397 (641)
Q Consensus 326 ~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p-------fi~vs- 397 (641)
.++.+|+|++|++.+...|...+..- +...+.||.||.|||||++||.+|..+++. +..|.
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 35678999999999999999998753 344568999999999999999999988654 22111
Q ss_pred h--------hhHHHH--HhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhh
Q 006534 398 A--------SEFVEL--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (641)
Q Consensus 398 ~--------se~v~~--~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~em 463 (641)
| .++++. -...+.+.+|++.+.+.. ....|.+|||+|.|.. +..|.||..+
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~---------------~afNALLKTL 143 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK---------------QAFNALLKTL 143 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH---------------HHHHHHhccc
Confidence 1 111111 123356778888887753 3345999999999853 4568999998
Q ss_pred cCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHH
Q 006534 464 DGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGAD 543 (641)
Q Consensus 464 dg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaD 543 (641)
+ ++...|++|.||..++.+++.+++ |- .++.+...+.++....|...+.++++..+++. +..+|+...| |.+|
T Consensus 144 E--EPP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~a-L~~ia~~a~G-s~RD 216 (515)
T COG2812 144 E--EPPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDA-LSLIARAAEG-SLRD 216 (515)
T ss_pred c--cCccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHH-HHHHHHHcCC-Chhh
Confidence 8 566789999999999999999987 32 25568899999999999999999988887764 8889999988 9999
Q ss_pred HHHHHHHHHHHH
Q 006534 544 LANLVNEAALLA 555 (641)
Q Consensus 544 L~~Lv~eAa~~A 555 (641)
...+++.|....
T Consensus 217 alslLDq~i~~~ 228 (515)
T COG2812 217 ALSLLDQAIAFG 228 (515)
T ss_pred HHHHHHHHHHcc
Confidence 999999998765
No 130
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.54 E-value=3.3e-14 Score=152.08 Aligned_cols=218 Identities=23% Similarity=0.346 Sum_probs=135.8
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-------CCCeEEe--e
Q 006534 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISC--S 397 (641)
Q Consensus 327 ~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el-------g~pfi~v--s 397 (641)
.+..|++|+|++++++.|.-.+. ++ ...++||+||||||||++|+++|+-+ ++|+-.. .
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~---~~---------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAI---DP---------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHh---cc---------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 45789999999999987765331 01 11469999999999999999999987 3322111 1
Q ss_pred h-hhH---------------HHHHhhcchHHHH------------------HHHHHHHhcCCceEEEcchhhhhhhcCCc
Q 006534 398 A-SEF---------------VELYVGMGASRVR------------------DLFARAKKEAPSIIFIDEIDAVAKSRDGR 443 (641)
Q Consensus 398 ~-se~---------------v~~~vG~~~~~vr------------------~lF~~A~~~aP~ILfIDEIDaL~~~r~~~ 443 (641)
+ .++ .....+.++.++- ..+..|. ..+||+|||+.+...
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~---~GiL~lDEInrl~~~---- 143 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARAN---RGYLYIDEVNLLEDH---- 143 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcC---CCeEEecChHhCCHH----
Confidence 0 000 0011111111111 1111111 249999999998543
Q ss_pred ccccchhHHHHHHHHHHhhhcCC-----------CCCCcEEEEEecCCCC-CCChhhhCCCCcceEEEecCCCH-HHHHH
Q 006534 444 FRIVSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETPDK-IGREA 510 (641)
Q Consensus 444 ~~~~~~~e~~~~LnqLL~emdg~-----------~~~~~ViVIaATN~pd-~LDpALlRpgRFd~~I~v~~Pd~-~eR~~ 510 (641)
+.+.|+..|+.- .....+++|+++|..+ .++++++. ||...+.++.|.. ++|.+
T Consensus 144 -----------~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~ 210 (334)
T PRK13407 144 -----------IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVE 210 (334)
T ss_pred -----------HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHH
Confidence 334455555422 1245789999999754 68999999 9999999998866 89999
Q ss_pred HHHHHHhcCC-----------------------------CCCCCCC--CHHHHHHhCC-CCCHHHHHHHHHHHHHHHHhc
Q 006534 511 ILKVHVSKKE-----------------------------LPLAKDI--DLGDIASMTT-GFTGADLANLVNEAALLAGRL 558 (641)
Q Consensus 511 IL~~~l~~~~-----------------------------l~l~~dv--dl~~LA~~t~-GfSgaDL~~Lv~eAa~~A~r~ 558 (641)
|++....... +.+++++ .+..++..+. .-.-+++. +++.|...|..+
T Consensus 211 il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~ 289 (334)
T PRK13407 211 VIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFE 289 (334)
T ss_pred HHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHc
Confidence 9987542210 1111111 0122222322 11335555 999999999999
Q ss_pred CCccccHHHHHHHHHHHhc
Q 006534 559 NKVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 559 ~~~~It~~d~~~Al~rvi~ 577 (641)
++..|+.+|+..+..-++.
T Consensus 290 Gr~~V~~~Di~~~~~~vl~ 308 (334)
T PRK13407 290 GAEAVGRSHLRSVATMALS 308 (334)
T ss_pred CCCeeCHHHHHHHHHHhhh
Confidence 9999999999888765553
No 131
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.54 E-value=2.8e-13 Score=155.80 Aligned_cols=217 Identities=24% Similarity=0.328 Sum_probs=140.1
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc----------CCCeEE
Q 006534 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFIS 395 (641)
Q Consensus 326 ~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el----------g~pfi~ 395 (641)
..+.+|++++|++++.+.+.+.+. ...+.+++|+||||||||++|+++++.. +.+|+.
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVA------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 346789999999998887654442 1235579999999999999999998755 468999
Q ss_pred eehhhHH-------HHHhhcchHH----HHHHHHH----------HHhcCCceEEEcchhhhhhhcCCcccccchhHHHH
Q 006534 396 CSASEFV-------ELYVGMGASR----VRDLFAR----------AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQ 454 (641)
Q Consensus 396 vs~se~v-------~~~vG~~~~~----vr~lF~~----------A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~ 454 (641)
++|..+. ....+..... .+..+.. .......+|||||++.|....+
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q------------- 282 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQ------------- 282 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHH-------------
Confidence 9987541 1111211100 0111110 0012345999999998864332
Q ss_pred HHHHHHhhhcC--------------------------CCCCCcEEEEEec-CCCCCCChhhhCCCCcceEEEecCCCHHH
Q 006534 455 TLNQLLTEMDG--------------------------FDSNSAVIVLGAT-NRSDVLDPALRRPGRFDRVVMVETPDKIG 507 (641)
Q Consensus 455 ~LnqLL~emdg--------------------------~~~~~~ViVIaAT-N~pd~LDpALlRpgRFd~~I~v~~Pd~~e 507 (641)
..|+..|+. ......+++|++| +.++.++++|++ ||. .+.+++++.++
T Consensus 283 --~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~ed 357 (615)
T TIGR02903 283 --NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPED 357 (615)
T ss_pred --HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHH
Confidence 222222211 0112346666655 567889999987 886 67889999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHh--------cCCccccHHHHHHHHHHH
Q 006534 508 REAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGR--------LNKVVVEKIDFIHAVERS 575 (641)
Q Consensus 508 R~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r--------~~~~~It~~d~~~Al~rv 575 (641)
...|++..+.+.++.++++ .++.|+..+. .++...+++..+...+.. .....|+.+|+++++...
T Consensus 358 i~~Il~~~a~~~~v~ls~e-al~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 358 IALIVLNAAEKINVHLAAG-VEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 9999999988766666554 3666777654 567766777666544321 123478999999988753
No 132
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.52 E-value=3.4e-13 Score=139.74 Aligned_cols=184 Identities=25% Similarity=0.258 Sum_probs=115.3
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehh------hHHHHHhhcchHHHHH--------------------HHHH
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS------EFVELYVGMGASRVRD--------------------LFAR 419 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~s------e~v~~~vG~~~~~vr~--------------------lF~~ 419 (641)
.++||+||||||||++|+++|..+|.||+.++|. +++..+.+.....+.+ .+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 4699999999999999999999999999998765 3333332221111111 1122
Q ss_pred HHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC--------------CCCCcEEEEEecCCC----
Q 006534 420 AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--------------DSNSAVIVLGATNRS---- 481 (641)
Q Consensus 420 A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~--------------~~~~~ViVIaATN~p---- 481 (641)
|... +.+|+|||||.+.+. +.+.|+..|+.. ..+.++.||+|+|..
T Consensus 102 A~~~-g~~lllDEi~r~~~~---------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g 165 (262)
T TIGR02640 102 AVRE-GFTLVYDEFTRSKPE---------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAG 165 (262)
T ss_pred HHHc-CCEEEEcchhhCCHH---------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccc
Confidence 2222 359999999987532 223344444321 122467899999976
Q ss_pred -CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHH---HH--h-C---CCCCHHHHHHHHHHH
Q 006534 482 -DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDI---AS--M-T---TGFTGADLANLVNEA 551 (641)
Q Consensus 482 -d~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~L---A~--~-t---~GfSgaDL~~Lv~eA 551 (641)
..++++|++ || ..+.++.|+.++-.+|++.+.. ++++. .+.+ +. + . ...+.+.+ +.-|
T Consensus 166 ~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~-----~~~~~-~~~iv~~~~~~R~~~~~~~~~~r~~---i~~~ 233 (262)
T TIGR02640 166 VHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD-----VAEDS-AATIVRLVREFRASGDEITSGLRAS---LMIA 233 (262)
T ss_pred eecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC-----CCHHH-HHHHHHHHHHHHhhCCccCCcHHHH---HHHH
Confidence 367899998 88 5899999999999999998752 22221 2221 11 1 1 12333444 4434
Q ss_pred HHHHHhcCCccccHHHHHHHHHHHhc
Q 006534 552 ALLAGRLNKVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 552 a~~A~r~~~~~It~~d~~~Al~rvi~ 577 (641)
...+....+..++.+||.+....++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 234 EVATQQDIPVDVDDEDFVDLCIDILA 259 (262)
T ss_pred HHHHHcCCCCCCCcHHHHHHHHHHhc
Confidence 44444445678888888888777654
No 133
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=7.4e-13 Score=152.97 Aligned_cols=282 Identities=21% Similarity=0.232 Sum_probs=184.0
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc----------CCCeEE
Q 006534 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFIS 395 (641)
Q Consensus 326 ~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el----------g~pfi~ 395 (641)
...-.++-|+|.++..+++-+++. .+..++-+|+|+||+|||.++..+|... +..+++
T Consensus 164 Ar~gklDPvIGRd~EI~r~iqIL~------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s 231 (786)
T COG0542 164 AREGKLDPVIGRDEEIRRTIQILS------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS 231 (786)
T ss_pred HhcCCCCCCcChHHHHHHHHHHHh------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE
Confidence 345668889999998887777764 3344567999999999999999999864 567888
Q ss_pred eehhhHHH--HHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEE
Q 006534 396 CSASEFVE--LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (641)
Q Consensus 396 vs~se~v~--~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~Vi 473 (641)
++...++. +|.|+-+.+++.+.+...+..+.||||||||.+.+...... +..|. ...|.-.| ....+.
T Consensus 232 LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G--~a~DA-aNiLKPaL-------ARGeL~ 301 (786)
T COG0542 232 LDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG--GAMDA-ANLLKPAL-------ARGELR 301 (786)
T ss_pred ecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc--cccch-hhhhHHHH-------hcCCeE
Confidence 88888875 68999999999999999988889999999999976543211 01111 12222222 245688
Q ss_pred EEEecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC----CCCCCCCCCHHHHHHh-----CCCC
Q 006534 474 VLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIASM-----TTGF 539 (641)
Q Consensus 474 VIaATN~pd-----~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~----~l~l~~dvdl~~LA~~-----t~Gf 539 (641)
+|+||...+ .-|+||-| ||. .|.+..|+.++-..||+..-.++ ++.+.+++ +...+.. +..|
T Consensus 302 ~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~A-l~aAv~LS~RYI~dR~ 377 (786)
T COG0542 302 CIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEA-LVAAVTLSDRYIPDRF 377 (786)
T ss_pred EEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHH-HHHHHHHHHhhcccCC
Confidence 999996432 45999999 997 89999999999999998765543 33444332 3333332 2344
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcchhhhhccCChhHHHH----------------------HHHH
Q 006534 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAV----------------------VARH 597 (641)
Q Consensus 540 SgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~rvi~g~~~~~~~ls~~ek~~----------------------va~h 597 (641)
-|.-.-.++++|+.............+.+++-+.......+.-...-.+.++.. +...
T Consensus 378 LPDKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 457 (786)
T COG0542 378 LPDKAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEAEVDED 457 (786)
T ss_pred CCchHHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhhccCHH
Confidence 556667889998876644322222222222222111100000000000011111 1123
Q ss_pred HHHHHHHHhHHhhcCCCCCceeeEeeeecccc-chhcccccccc
Q 006534 598 EAGHAVVGTAVASLLPGQPRVEVKDWRDSKSQ-CMSCVCHKALI 640 (641)
Q Consensus 598 EaghAlv~~~l~~~~~~~~~v~kiti~~~~~~-~~~~~~~~~~~ 640 (641)
+++..+..| +..||.|++..+..++ -|+..+|+|+|
T Consensus 458 ~Ia~vv~~~-------TgIPv~~l~~~e~~kll~le~~L~~rVi 494 (786)
T COG0542 458 DIAEVVARW-------TGIPVAKLLEDEKEKLLNLERRLKKRVI 494 (786)
T ss_pred HHHHHHHHH-------HCCChhhhchhhHHHHHHHHHHHhccee
Confidence 355555544 6789999999998888 99999999986
No 134
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.50 E-value=3.3e-13 Score=147.90 Aligned_cols=219 Identities=28% Similarity=0.355 Sum_probs=134.4
Q ss_pred cccCChHHHHHHHHHHHH----hcCh-hHHhhhCC-CCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH-HH
Q 006534 333 DVAGVDEAKEELEEIVEF----LRSP-DKYIRLGA-RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LY 405 (641)
Q Consensus 333 DV~G~~e~K~~L~eiv~~----L~~p-~~~~~lg~-~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~-~~ 405 (641)
-|+|++++++.|...+.. +... ..-..-+. ....++||+||||||||++|+++|..+++||..+++..+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 379999999999877632 1110 00000000 12468999999999999999999999999999999887653 46
Q ss_pred hhcc-hHHHHHHHHHH----HhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC-----------CC
Q 006534 406 VGMG-ASRVRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SN 469 (641)
Q Consensus 406 vG~~-~~~vr~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~-----------~~ 469 (641)
+|.. +..+..++..+ ....++||||||||.+.+++.+.. ...+-..+.+.+.||+.|++.. +.
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s-~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPS-ITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhcccc-ccccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 6764 33344444322 234578999999999987543211 0001111245566666665532 12
Q ss_pred CcEEEEEecCCC---------------------------C-----------------------CCChhhhCCCCcceEEE
Q 006534 470 SAVIVLGATNRS---------------------------D-----------------------VLDPALRRPGRFDRVVM 499 (641)
Q Consensus 470 ~~ViVIaATN~p---------------------------d-----------------------~LDpALlRpgRFd~~I~ 499 (641)
.+.++|.|+|-. + .+.|+++ ||+|..+.
T Consensus 237 ~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~ 314 (413)
T TIGR00382 237 QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIAT 314 (413)
T ss_pred CCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEee
Confidence 356777777751 0 0234444 49999999
Q ss_pred ecCCCHHHHHHHHHHH----Hhc-------CCCC--CCCCCCHHHHHHh--CCCCCHHHHHHHHHHHHHHH
Q 006534 500 VETPDKIGREAILKVH----VSK-------KELP--LAKDIDLGDIASM--TTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 500 v~~Pd~~eR~~IL~~~----l~~-------~~l~--l~~dvdl~~LA~~--t~GfSgaDL~~Lv~eAa~~A 555 (641)
+.+.+.++..+|+... +++ +++. ++++ .++.|++. ...+-.|.|+.++++...-+
T Consensus 315 f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~-a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~ 384 (413)
T TIGR00382 315 LEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEE-ALKAIAKKALERKTGARGLRSIVEGLLLDV 384 (413)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHH-HHHHHHHhCCCCCCCchHHHHHHHHhhHHH
Confidence 9999999999988753 221 1222 2222 25566654 33455577777777766544
No 135
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.50 E-value=1.7e-13 Score=147.28 Aligned_cols=222 Identities=21% Similarity=0.263 Sum_probs=142.5
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-------CCCeEEeeh-
Q 006534 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSA- 398 (641)
Q Consensus 327 ~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el-------g~pfi~vs~- 398 (641)
+...|++|+|++++|..|.-.+. +| ...||||.||+|||||++||+++..+ +.||. +..
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~---~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVI---DP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhcc---CC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCC
Confidence 45789999999999987765442 22 23589999999999999999998765 23443 111
Q ss_pred ------hhHHHH-------------------HhhcchHHH------HHHHHHHH---------hcCCceEEEcchhhhhh
Q 006534 399 ------SEFVEL-------------------YVGMGASRV------RDLFARAK---------KEAPSIIFIDEIDAVAK 438 (641)
Q Consensus 399 ------se~v~~-------------------~vG~~~~~v------r~lF~~A~---------~~aP~ILfIDEIDaL~~ 438 (641)
+++... ..|.++.++ ...|.... .....+||+|||+.+..
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 011110 012222221 11111110 11134999999999865
Q ss_pred hcCCcccccchhHHHHHHHHHHhhhcC---------C--CCCCcEEEEEecCCCC-CCChhhhCCCCcceEEEecCCC-H
Q 006534 439 SRDGRFRIVSNDEREQTLNQLLTEMDG---------F--DSNSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETPD-K 505 (641)
Q Consensus 439 ~r~~~~~~~~~~e~~~~LnqLL~emdg---------~--~~~~~ViVIaATN~pd-~LDpALlRpgRFd~~I~v~~Pd-~ 505 (641)
..+ ..|+..|+. . .....+++|++.|..+ .++++|+. ||...+.+..|+ .
T Consensus 159 ~~Q---------------~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~ 221 (350)
T CHL00081 159 HLV---------------DILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDP 221 (350)
T ss_pred HHH---------------HHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCCh
Confidence 433 334444432 1 1235788999888765 69999999 999999999997 5
Q ss_pred HHHHHHHHHHHhcC-----------------------------CCCCCCCC--CHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 006534 506 IGREAILKVHVSKK-----------------------------ELPLAKDI--DLGDIASMTTGFTGADLANLVNEAALL 554 (641)
Q Consensus 506 ~eR~~IL~~~l~~~-----------------------------~l~l~~dv--dl~~LA~~t~GfSgaDL~~Lv~eAa~~ 554 (641)
+.+.+|++...... .+.+++++ -+..++..+.--+++--..+++-|...
T Consensus 222 ~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~ 301 (350)
T CHL00081 222 ELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKAL 301 (350)
T ss_pred HHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHH
Confidence 89999998753211 01111111 022233344333667777788888899
Q ss_pred HHhcCCccccHHHHHHHHHHHhcc
Q 006534 555 AGRLNKVVVEKIDFIHAVERSIAG 578 (641)
Q Consensus 555 A~r~~~~~It~~d~~~Al~rvi~g 578 (641)
|+.+++..|+.+|+..+..-++..
T Consensus 302 Aal~GR~~V~pdDv~~~a~~vL~H 325 (350)
T CHL00081 302 AAFEGRTEVTPKDIFKVITLCLRH 325 (350)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999998877754
No 136
>PRK09087 hypothetical protein; Validated
Probab=99.49 E-value=2.6e-13 Score=137.95 Aligned_cols=173 Identities=18% Similarity=0.194 Sum_probs=120.9
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCccc
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFR 445 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~ 445 (641)
+.++|+||+|+|||+|+++++...++.++ +..++...+. ..... .+|+|||+|.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~~~~~-----------~~~~~---~~l~iDDi~~~~~------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIGSDAA-----------NAAAE---GPVLIEDIDAGGF------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcchHHH-----------Hhhhc---CeEEEECCCCCCC-------
Confidence 34999999999999999999988766544 4433332221 11111 3799999997621
Q ss_pred ccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC---CCChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCC
Q 006534 446 IVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD---VLDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKE 520 (641)
Q Consensus 446 ~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd---~LDpALlRpgRF--d~~I~v~~Pd~~eR~~IL~~~l~~~~ 520 (641)
...+ +-.++.. .....+.+||+++..|. ...+.|++ || ...+++..|+.++|.++++.+++..+
T Consensus 102 --~~~~----lf~l~n~---~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~ 170 (226)
T PRK09087 102 --DETG----LFHLINS---VRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQ 170 (226)
T ss_pred --CHHH----HHHHHHH---HHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcC
Confidence 1112 2222222 22334567777776553 23677887 76 47899999999999999999999888
Q ss_pred CCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHH
Q 006534 521 LPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (641)
Q Consensus 521 l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~rv 575 (641)
+.+++++ ++.|+++..+ +.+.+..+++.....+...+ ..||...+.+++...
T Consensus 171 ~~l~~ev-~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 171 LYVDPHV-VYYLVSRMER-SLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred CCCCHHH-HHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 8888875 8889998875 77888888877766665444 558988888888654
No 137
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.49 E-value=4.7e-13 Score=145.81 Aligned_cols=175 Identities=30% Similarity=0.409 Sum_probs=126.3
Q ss_pred cccCChHHHHHHHHHHHH-hcChhHHhhhC-CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH-HHhh-c
Q 006534 333 DVAGVDEAKEELEEIVEF-LRSPDKYIRLG-ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVG-M 408 (641)
Q Consensus 333 DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg-~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~-~~vG-~ 408 (641)
.|+|++++|+.+...+.. ++.......+. ...|.++||+||||||||++|+++|..++.||+.+++++|.+ .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 399999999999877632 11110000000 123689999999999999999999999999999999998887 5777 3
Q ss_pred chHHHHHHHHHHH-------------------------------------------------------------------
Q 006534 409 GASRVRDLFARAK------------------------------------------------------------------- 421 (641)
Q Consensus 409 ~~~~vr~lF~~A~------------------------------------------------------------------- 421 (641)
.+..++++|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4566677766661
Q ss_pred -----------------------------------------------------------------------hcCCceEEE
Q 006534 422 -----------------------------------------------------------------------KEAPSIIFI 430 (641)
Q Consensus 422 -----------------------------------------------------------------------~~aP~ILfI 430 (641)
...-.||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 012349999
Q ss_pred cchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC--------CCCcEEEEEecC----CCCCCChhhhCCCCcceEE
Q 006534 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVLGATN----RSDVLDPALRRPGRFDRVV 498 (641)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~--------~~~~ViVIaATN----~pd~LDpALlRpgRFd~~I 498 (641)
||||.++.+.+.. +.+-..+.+-..||..++|-. ...+|++||+.- .|+.|-|.|.- ||..++
T Consensus 256 DEiDKIa~~~~~~---~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v 330 (443)
T PRK05201 256 DEIDKIAARGGSS---GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRV 330 (443)
T ss_pred EcchhhcccCCCC---CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEE
Confidence 9999998765321 122223446678888888732 346788888863 45667788864 999999
Q ss_pred EecCCCHHHHHHHH
Q 006534 499 MVETPDKIGREAIL 512 (641)
Q Consensus 499 ~v~~Pd~~eR~~IL 512 (641)
.+..++.++...||
T Consensus 331 ~L~~L~~~dL~~IL 344 (443)
T PRK05201 331 ELDALTEEDFVRIL 344 (443)
T ss_pred ECCCCCHHHHHHHh
Confidence 99999999998887
No 138
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.48 E-value=4.3e-13 Score=146.04 Aligned_cols=175 Identities=33% Similarity=0.459 Sum_probs=124.5
Q ss_pred cccCChHHHHHHHHHHHH-hcChhHHhhh-CCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH-HHhh-c
Q 006534 333 DVAGVDEAKEELEEIVEF-LRSPDKYIRL-GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVG-M 408 (641)
Q Consensus 333 DV~G~~e~K~~L~eiv~~-L~~p~~~~~l-g~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~-~~vG-~ 408 (641)
-|+|++++|+.+...+.. ++.......+ ..-.|+++||+||||||||++|+++|..++.||+.+++..+.+ .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 389999999999776653 1111100001 1235799999999999999999999999999999999887765 5666 3
Q ss_pred chHHHHHHHHHHH-------------------------------------------------------------------
Q 006534 409 GASRVRDLFARAK------------------------------------------------------------------- 421 (641)
Q Consensus 409 ~~~~vr~lF~~A~------------------------------------------------------------------- 421 (641)
.+..++++|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 5566666665540
Q ss_pred ------------------------------------------------------------------------hcCCceEE
Q 006534 422 ------------------------------------------------------------------------KEAPSIIF 429 (641)
Q Consensus 422 ------------------------------------------------------------------------~~aP~ILf 429 (641)
...-.|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01234999
Q ss_pred EcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC--------CCCcEEEEEecC----CCCCCChhhhCCCCcceE
Q 006534 430 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVLGATN----RSDVLDPALRRPGRFDRV 497 (641)
Q Consensus 430 IDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~--------~~~~ViVIaATN----~pd~LDpALlRpgRFd~~ 497 (641)
|||||.++.+.... +.+-..+.+-..||..++|-. ...+|++||+.- .|+.|=|.|. |||...
T Consensus 253 iDEiDKIa~~~~~~---~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~ 327 (441)
T TIGR00390 253 IDEIDKIAKKGESS---GADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIR 327 (441)
T ss_pred EEchhhhcccCCCC---CCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceE
Confidence 99999998765221 122223446678888888732 245788998863 4556667776 599999
Q ss_pred EEecCCCHHHHHHHH
Q 006534 498 VMVETPDKIGREAIL 512 (641)
Q Consensus 498 I~v~~Pd~~eR~~IL 512 (641)
+.+..++.++...||
T Consensus 328 v~L~~L~~edL~rIL 342 (441)
T TIGR00390 328 VELQALTTDDFERIL 342 (441)
T ss_pred EECCCCCHHHHHHHh
Confidence 999999999998887
No 139
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.1e-12 Score=150.83 Aligned_cols=210 Identities=19% Similarity=0.260 Sum_probs=146.1
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEE--------e-
Q 006534 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS--------C- 396 (641)
Q Consensus 326 ~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~--------v- 396 (641)
..+.+|+||+|++++++.|...+. ..+.|..+|||||+|+|||++|+++|..+.+.... |
T Consensus 11 yRP~~f~~viGq~~~~~~L~~~i~-----------~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 11 YRPSTFESVVGQEALTTTLKNAIA-----------TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 356789999999999998888875 23567779999999999999999999987542110 0
Q ss_pred ehhhHHHH-------Hh---hcchHHHHHHHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhh
Q 006534 397 SASEFVEL-------YV---GMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (641)
Q Consensus 397 s~se~v~~-------~v---G~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~e 462 (641)
+|..+.+. +. ..+...++++.+.+... ...|++|||+|.+.. ...+.|+..
T Consensus 80 sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~---------------~a~naLLK~ 144 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ---------------AAFNAFLKT 144 (614)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH---------------HHHHHHHHH
Confidence 11111110 01 11245677777666432 223999999998842 234778888
Q ss_pred hcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHH
Q 006534 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (641)
Q Consensus 463 mdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSga 542 (641)
|+... ...++|.+|+.+..|-+.+++ |. ..+.|.+++.++....++..+.+.++.++++ .+..|+..+.| +.+
T Consensus 145 LEepp--~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~-al~~La~~s~g-dlr 217 (614)
T PRK14971 145 LEEPP--SYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPE-ALNVIAQKADG-GMR 217 (614)
T ss_pred HhCCC--CCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHH
Confidence 87533 345666666667888899988 54 3789999999999999999888888776655 47788888765 778
Q ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006534 543 DLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 543 DL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (641)
++.++++....++ +.. |+.+++.+.+
T Consensus 218 ~al~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 218 DALSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred HHHHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 8877777766554 222 6666555443
No 140
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.48 E-value=4.3e-13 Score=143.80 Aligned_cols=217 Identities=24% Similarity=0.275 Sum_probs=138.6
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-------CCCeE--------
Q 006534 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFI-------- 394 (641)
Q Consensus 330 tf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el-------g~pfi-------- 394 (641)
.|..|+|++++|..|.-.+- +| ...++||.|+||+|||+|++++++-. ++|+-
T Consensus 2 pf~~ivgq~~~~~al~~~~~---~~---------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVI---DP---------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhc---CC---------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 48899999999987643331 22 23579999999999999999999866 33332
Q ss_pred -Eeehhh----------------HHHHHhhcchHHHHH------------------HHHHHHhcCCceEEEcchhhhhhh
Q 006534 395 -SCSASE----------------FVELYVGMGASRVRD------------------LFARAKKEAPSIIFIDEIDAVAKS 439 (641)
Q Consensus 395 -~vs~se----------------~v~~~vG~~~~~vr~------------------lF~~A~~~aP~ILfIDEIDaL~~~ 439 (641)
..+|.. +.++..|.++.++-. ++.+| ...+||||||+.+...
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L~~~ 146 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLLEDH 146 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhCCHH
Confidence 111111 011111122222211 11112 1349999999998543
Q ss_pred cCCcccccchhHHHHHHHHHHhhhcCC-----------CCCCcEEEEEecCCCC-CCChhhhCCCCcceEEEecCCCH-H
Q 006534 440 RDGRFRIVSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETPDK-I 506 (641)
Q Consensus 440 r~~~~~~~~~~e~~~~LnqLL~emdg~-----------~~~~~ViVIaATN~pd-~LDpALlRpgRFd~~I~v~~Pd~-~ 506 (641)
.+ +.|+..|+.- ..+..+++|+++|..+ .++++|+. ||...+.++.|+. +
T Consensus 147 ~Q---------------~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~e 209 (337)
T TIGR02030 147 LV---------------DVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVE 209 (337)
T ss_pred HH---------------HHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHH
Confidence 32 3444444321 1234689999988765 79999999 9999999999875 8
Q ss_pred HHHHHHHHHHhcC-----------------------------CCCCCCCC--CHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 006534 507 GREAILKVHVSKK-----------------------------ELPLAKDI--DLGDIASMTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 507 eR~~IL~~~l~~~-----------------------------~l~l~~dv--dl~~LA~~t~GfSgaDL~~Lv~eAa~~A 555 (641)
+|.+|++...... .+.+++++ .+..++..+..-+.+-...+++-|...|
T Consensus 210 er~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~A 289 (337)
T TIGR02030 210 LRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALA 289 (337)
T ss_pred HHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHH
Confidence 8889988743210 11111111 0223333443335677778889999999
Q ss_pred HhcCCccccHHHHHHHHHHHhcc
Q 006534 556 GRLNKVVVEKIDFIHAVERSIAG 578 (641)
Q Consensus 556 ~r~~~~~It~~d~~~Al~rvi~g 578 (641)
..+++..|+.+|+..++.-++..
T Consensus 290 al~GR~~V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 290 AFEGRTEVTVDDIRRVAVLALRH 312 (337)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998877653
No 141
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.1e-12 Score=138.72 Aligned_cols=220 Identities=21% Similarity=0.277 Sum_probs=155.2
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----eEEeehhhHHHHH
Q 006534 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-----FISCSASEFVELY 405 (641)
Q Consensus 331 f~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p-----fi~vs~se~v~~~ 405 (641)
-+.+.+.++..++|..++...- ....|.++++|||||||||.+++.++.++.-+ ++++||....+.+
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~--------~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 16 PEELPHREEEINQLASFLAPAL--------RGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccccHHHHHHHHHHHHHHh--------cCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 3448899998888887765422 23456679999999999999999999987433 8999987554321
Q ss_pred ---------------hhcchHHH-HHHHHHHHh-cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCC
Q 006534 406 ---------------VGMGASRV-RDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS 468 (641)
Q Consensus 406 ---------------vG~~~~~v-r~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~ 468 (641)
.|.....+ ..+++.... ...-||++||+|.|....+ .+|..|+...+..
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~------------~~LY~L~r~~~~~-- 153 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG------------EVLYSLLRAPGEN-- 153 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc------------hHHHHHHhhcccc--
Confidence 11122222 222222222 3455999999999975432 5777787776655
Q ss_pred CCcEEEEEecCCC---CCCChhhhCCCCc-ceEEEecCCCHHHHHHHHHHHHhcC--CCCCCCCCCHHHHH---HhCCCC
Q 006534 469 NSAVIVLGATNRS---DVLDPALRRPGRF-DRVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGDIA---SMTTGF 539 (641)
Q Consensus 469 ~~~ViVIaATN~p---d~LDpALlRpgRF-d~~I~v~~Pd~~eR~~IL~~~l~~~--~l~l~~dvdl~~LA---~~t~Gf 539 (641)
..+|.+|+.+|.. +.+|+.+.+ +| ...|.|++++.+|..+|++..++.. ...+++++ ++.+| ....|
T Consensus 154 ~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~v-l~lia~~~a~~~G- 229 (366)
T COG1474 154 KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDV-LKLIAALVAAESG- 229 (366)
T ss_pred ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccH-HHHHHHHHHHcCc-
Confidence 5678999999876 578899887 44 2458999999999999999988641 12233332 43344 34444
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHh
Q 006534 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (641)
Q Consensus 540 SgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~rvi 576 (641)
+.+-...++..|+..|.+++...++.+++..|.+..-
T Consensus 230 DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~ 266 (366)
T COG1474 230 DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIE 266 (366)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhh
Confidence 6677789999999999999999999999999955443
No 142
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.47 E-value=9e-13 Score=154.25 Aligned_cols=165 Identities=22% Similarity=0.327 Sum_probs=115.8
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH-----HHhh
Q 006534 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-----LYVG 407 (641)
Q Consensus 333 DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~-----~~vG 407 (641)
.|+|++++++.|.+.+...+..-. -..++...+||+||||||||.+|+++|..++.+|+.++++++.+ .+.|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~---~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG---HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc---CCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 489999999999998875432100 00123346999999999999999999999999999999998754 3333
Q ss_pred cchH-----HHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC---------CCCcEE
Q 006534 408 MGAS-----RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SNSAVI 473 (641)
Q Consensus 408 ~~~~-----~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~---------~~~~Vi 473 (641)
.... .-..+.+..+....|||||||||.+.+ .+.+.|++.||... .-.+++
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~---------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~i 600 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP---------------DVFNLLLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH---------------HHHHHHHHHHhcCeeecCCCceecCCCcE
Confidence 2111 111223333445568999999999853 24466666665321 114678
Q ss_pred EEEecCCC-------------------------CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHh
Q 006534 474 VLGATNRS-------------------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS 517 (641)
Q Consensus 474 VIaATN~p-------------------------d~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~ 517 (641)
+|+|||.- ..+.|.++. |+|.+|.|++.+.++..+|+...+.
T Consensus 601 iI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred EEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 99999832 125577777 9999999999999999999887664
No 143
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.45 E-value=1.4e-12 Score=153.00 Aligned_cols=200 Identities=27% Similarity=0.345 Sum_probs=132.2
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCC-eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH-----H
Q 006534 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPR-GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-----Y 405 (641)
Q Consensus 332 ~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pk-gVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~-----~ 405 (641)
..|+|++++++.+.+.+...+..- .....|. .+||+||||||||+||+++|..++.+++.++++++.+. .
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~----~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~l 529 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGL----GNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRL 529 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCC----CCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHH
Confidence 358899999998888776532110 0012244 48899999999999999999999999999999987652 2
Q ss_pred hhc-----chHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC---------CCCc
Q 006534 406 VGM-----GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SNSA 471 (641)
Q Consensus 406 vG~-----~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~---------~~~~ 471 (641)
.|. +......+.+..+....+||+|||||.+.+ .+.+.|++.||... .-.+
T Consensus 530 ig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~---------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~ 594 (731)
T TIGR02639 530 IGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHP---------------DIYNILLQVMDYATLTDNNGRKADFRN 594 (731)
T ss_pred hcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCH---------------HHHHHHHHhhccCeeecCCCcccCCCC
Confidence 222 112223344445556668999999998743 24466666666431 1235
Q ss_pred EEEEEecCCCC-------------------------CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc-------C
Q 006534 472 VIVLGATNRSD-------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK-------K 519 (641)
Q Consensus 472 ViVIaATN~pd-------------------------~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~-------~ 519 (641)
.++|+|||... .+.|.++. |||.+|.|.+.+.++..+|++..+.+ +
T Consensus 595 ~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~ 672 (731)
T TIGR02639 595 VILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEK 672 (731)
T ss_pred CEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 78888988631 24666765 99999999999999999999887753 1
Q ss_pred C--CCCCCCCCHHHHHHh--CCCCCHHHHHHHHHHHHH
Q 006534 520 E--LPLAKDIDLGDIASM--TTGFTGADLANLVNEAAL 553 (641)
Q Consensus 520 ~--l~l~~dvdl~~LA~~--t~GfSgaDL~~Lv~eAa~ 553 (641)
+ +.++++ .++.|+.. ...+-.+.|+.+++.-..
T Consensus 673 ~~~l~i~~~-a~~~La~~~~~~~~GaR~l~r~i~~~~~ 709 (731)
T TIGR02639 673 NIKLELTDD-AKKYLAEKGYDEEFGARPLARVIQEEIK 709 (731)
T ss_pred CCeEEeCHH-HHHHHHHhCCCcccCchHHHHHHHHHhH
Confidence 2 122222 24445543 334455667666665443
No 144
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.43 E-value=1.3e-12 Score=150.99 Aligned_cols=215 Identities=23% Similarity=0.285 Sum_probs=140.2
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc--------------------
Q 006534 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------------------- 389 (641)
Q Consensus 330 tf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el-------------------- 389 (641)
.|.+|+|+++++..|.-... +| ...+|||.||||||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~av---~~---------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAV---DP---------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhh---CC---------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 48899999999977654332 22 12469999999999999999999877
Q ss_pred ---------------CCCeEEeehhhHHHHHhhcc--hHHH--------HHHHHHHHhcCCceEEEcchhhhhhhcCCcc
Q 006534 390 ---------------EVPFISCSASEFVELYVGMG--ASRV--------RDLFARAKKEAPSIIFIDEIDAVAKSRDGRF 444 (641)
Q Consensus 390 ---------------g~pfi~vs~se~v~~~vG~~--~~~v--------r~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~ 444 (641)
..||+.+.++.......|.- ...+ ..++.+|. ..|||||||+.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~---~GiL~lDEi~~l~~~----- 141 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAH---RGILYIDEVNLLDDH----- 141 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecC---CCeEEeChhhhCCHH-----
Confidence 35777665554333333321 0000 11122222 249999999998643
Q ss_pred cccchhHHHHHHHHHHhhhcCC-----------CCCCcEEEEEecCCC-CCCChhhhCCCCcceEEEecCCC-HHHHHHH
Q 006534 445 RIVSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRS-DVLDPALRRPGRFDRVVMVETPD-KIGREAI 511 (641)
Q Consensus 445 ~~~~~~e~~~~LnqLL~emdg~-----------~~~~~ViVIaATN~p-d~LDpALlRpgRFd~~I~v~~Pd-~~eR~~I 511 (641)
+.+.|+..|+.- .....+++|+++|.. ..+.++|+. ||+.+|.++.|. .+++.++
T Consensus 142 ----------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~i 209 (633)
T TIGR02442 142 ----------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEI 209 (633)
T ss_pred ----------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHH
Confidence 335566655421 113468999999964 368899999 999999998764 5777777
Q ss_pred HHHHHhcC-----------------------------CCCCCCCCCHHHHHHhC--CCC-CHHHHHHHHHHHHHHHHhcC
Q 006534 512 LKVHVSKK-----------------------------ELPLAKDIDLGDIASMT--TGF-TGADLANLVNEAALLAGRLN 559 (641)
Q Consensus 512 L~~~l~~~-----------------------------~l~l~~dvdl~~LA~~t--~Gf-SgaDL~~Lv~eAa~~A~r~~ 559 (641)
++...... .+.+.++ .+..++..+ .|. +.+-...+++-|..+|..++
T Consensus 210 l~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~-~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~g 288 (633)
T TIGR02442 210 IRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDS-LIRFISELCIEFGVDGHRADIVMARAARALAALDG 288 (633)
T ss_pred HHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC
Confidence 76532210 1122221 123333222 244 45666778888889999999
Q ss_pred CccccHHHHHHHHHHHhc
Q 006534 560 KVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 560 ~~~It~~d~~~Al~rvi~ 577 (641)
+..|+.+|+.+|+.-++.
T Consensus 289 r~~V~~~Dv~~A~~lvL~ 306 (633)
T TIGR02442 289 RRRVTAEDVREAAELVLP 306 (633)
T ss_pred CCcCCHHHHHHHHHHHhh
Confidence 999999999999998774
No 145
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.40 E-value=9.6e-13 Score=145.54 Aligned_cols=215 Identities=25% Similarity=0.360 Sum_probs=143.1
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH
Q 006534 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (641)
Q Consensus 327 ~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~ 403 (641)
...+|+||+|.+++..++.+.+... ++.+..|||.|.+||||.++|++|.+.. +.||+.+||..+-+
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr~----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKRI----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHhh----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 4578999999999988888877643 4556689999999999999999999865 78999999976543
Q ss_pred H-------------HhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC----
Q 006534 404 L-------------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF---- 466 (641)
Q Consensus 404 ~-------------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~---- 466 (641)
. |.|....--..+|+.|..+ .||+|||..+...-| ..||+.++.-
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgempl~LQ---------------aKLLRVLQEkei~r 371 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMPLPLQ---------------AKLLRVLQEKEIER 371 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCCHHHH---------------HHHHHHHhhceEEe
Confidence 2 2222222145677777655 899999998865443 3344444321
Q ss_pred -C----CCCcEEEEEecCCCCCCChhhhCCCCcce-------EEEecCCCHHHHHH--------HHHHHHhcCC--CC-C
Q 006534 467 -D----SNSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA--------ILKVHVSKKE--LP-L 523 (641)
Q Consensus 467 -~----~~~~ViVIaATN~pd~LDpALlRpgRFd~-------~I~v~~Pd~~eR~~--------IL~~~l~~~~--l~-l 523 (641)
. ....|.||||||+. |-.++ ..|+|-. ++.+..|+..+|.+ ++..+.++.+ ++ +
T Consensus 372 vG~t~~~~vDVRIIAATN~n--L~~~i-~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~l 448 (560)
T COG3829 372 VGGTKPIPVDVRIIAATNRN--LEKMI-AEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGL 448 (560)
T ss_pred cCCCCceeeEEEEEeccCcC--HHHHH-hcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccC
Confidence 1 23469999999985 22222 2344422 56677788888864 2333222222 22 3
Q ss_pred CCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHH-HHHHHH
Q 006534 524 AKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI-HAVERS 575 (641)
Q Consensus 524 ~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~-~Al~rv 575 (641)
.+++ +..|.++.+--+.++|+|++.+|...+. +...|+.+|+. .++...
T Consensus 449 s~~a-~~~L~~y~WPGNVRELeNviER~v~~~~--~~~~I~~~~lp~~~l~~k 498 (560)
T COG3829 449 SPDA-LALLLRYDWPGNVRELENVIERAVNLVE--SDGLIDADDLPAFALEEK 498 (560)
T ss_pred CHHH-HHHHHhCCCCchHHHHHHHHHHHHhccC--Ccceeehhhcchhhhccc
Confidence 3332 5556666655578999999999998553 44458888877 555543
No 146
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.40 E-value=3.9e-12 Score=115.31 Aligned_cols=121 Identities=42% Similarity=0.640 Sum_probs=81.9
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHhhcchHH---HHHHHHHHHhcCCceEEEcchhhhh
Q 006534 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGASR---VRDLFARAKKEAPSIIFIDEIDAVA 437 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~~vG~~~~~---vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (641)
...+++++||||||||++++.+++++ +.+++.+++.+............ ....+..+....+++|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45679999999999999999999998 89999999887765433222111 1222333445567899999999873
Q ss_pred hhcCCcccccchhHHHHHHHHHHhhhcCCC----CCCcEEEEEecCCCC--CCChhhhCCCCcceEEEec
Q 006534 438 KSRDGRFRIVSNDEREQTLNQLLTEMDGFD----SNSAVIVLGATNRSD--VLDPALRRPGRFDRVVMVE 501 (641)
Q Consensus 438 ~~r~~~~~~~~~~e~~~~LnqLL~emdg~~----~~~~ViVIaATN~pd--~LDpALlRpgRFd~~I~v~ 501 (641)
... . ..++..+..+. ...++.+|+++|... .+++.+.. ||+..+.++
T Consensus 98 ~~~------------~---~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 RGA------------Q---NALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred HHH------------H---HHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 211 1 22222222222 245788888998876 67788877 898777665
No 147
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.37 E-value=2.2e-12 Score=145.80 Aligned_cols=211 Identities=20% Similarity=0.271 Sum_probs=133.7
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHH-
Q 006534 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL- 404 (641)
Q Consensus 329 vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~- 404 (641)
.+|+|++|.+++.+.+.+.+..+.. ...+|||+|++||||+++|+++.... +.||+.++|..+-+.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~----------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYAR----------SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 6799999999999988888865432 34579999999999999999998764 679999999766332
Q ss_pred ----Hhhcc------h--HHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC-----C
Q 006534 405 ----YVGMG------A--SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----D 467 (641)
Q Consensus 405 ----~vG~~------~--~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~-----~ 467 (641)
..|.. + ..-..+|+.|.. ..||||||+.|....+ ..|+..++.- .
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~~~Q---------------~~Ll~~L~~~~~~r~g 340 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMPLPLQ---------------TRLLRVLEEREVVRVG 340 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCCHHHH---------------HHHHHHHhcCcEEecC
Confidence 11210 0 012345665543 3899999999975443 2333333321 1
Q ss_pred ----CCCcEEEEEecCCC--C-----CCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHhc----CCCCCCCCCC
Q 006534 468 ----SNSAVIVLGATNRS--D-----VLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KELPLAKDID 528 (641)
Q Consensus 468 ----~~~~ViVIaATN~p--d-----~LDpALlRpgRFd~~I~v~~Pd~~eR~~----IL~~~l~~----~~l~l~~dvd 528 (641)
...++.+|++||.. + .+.+.|.. |+. .+.+..|+..+|.+ ++..++.+ .++++.++.
T Consensus 341 ~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a- 416 (526)
T TIGR02329 341 GTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAA- 416 (526)
T ss_pred CCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHH-
Confidence 12346899999875 1 12223322 332 46777888887764 33444432 233343332
Q ss_pred HHH-------HHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 006534 529 LGD-------IASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (641)
Q Consensus 529 l~~-------LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~A 571 (641)
+.. |..+.+--+.++|++++++++..+.......|+.+++...
T Consensus 417 ~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~~ 466 (526)
T TIGR02329 417 AQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRAL 466 (526)
T ss_pred HHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhhh
Confidence 333 5555555577999999999988764333457888886543
No 148
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.37 E-value=2.2e-12 Score=145.95 Aligned_cols=210 Identities=22% Similarity=0.306 Sum_probs=132.8
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHh-----------cCCCeEEee
Q 006534 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE-----------AEVPFISCS 397 (641)
Q Consensus 329 vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~e-----------lg~pfi~vs 397 (641)
.+|+|++|.+.+.+++.+.+..+.. .+.+|||+|++||||+++|+++... .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~----------s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYAR----------SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 5799999999999998888765422 3457999999999999999999887 468999999
Q ss_pred hhhHHHH-----Hhhc------ch--HHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhc
Q 006534 398 ASEFVEL-----YVGM------GA--SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (641)
Q Consensus 398 ~se~v~~-----~vG~------~~--~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd 464 (641)
|..+.+. ..|. ++ ..-..+|+.|..+ .||||||+.|....+ ..|+..++
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~Lp~~~Q---------------~kLl~~L~ 347 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG---TLFLDEIGEMPLPLQ---------------TRLLRVLE 347 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCCC---EEEEcChHhCCHHHH---------------HHHHhhhh
Confidence 9866332 1221 11 0112356655433 999999999975443 33444443
Q ss_pred CC-----C----CCCcEEEEEecCCCCCCChhhhCCCCcce-------EEEecCCCHHHHHH----HHHHHHhc----CC
Q 006534 465 GF-----D----SNSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSK----KE 520 (641)
Q Consensus 465 g~-----~----~~~~ViVIaATN~pd~LDpALlRpgRFd~-------~I~v~~Pd~~eR~~----IL~~~l~~----~~ 520 (641)
.- . ...++.+|++||.. +. .+...|+|.. .+.+..|+..+|.+ +++.++.+ .+
T Consensus 348 e~~~~r~G~~~~~~~dvRiIaat~~~--L~-~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~ 424 (538)
T PRK15424 348 EKEVTRVGGHQPVPVDVRVISATHCD--LE-EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALS 424 (538)
T ss_pred cCeEEecCCCceeccceEEEEecCCC--HH-HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcC
Confidence 21 1 12357899999875 22 2222233321 56778888888764 34444433 34
Q ss_pred CCCCCCCC------HHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHH
Q 006534 521 LPLAKDID------LGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (641)
Q Consensus 521 l~l~~dvd------l~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~ 569 (641)
.++.+++- +..|..+.+--+.++|++++++++..+.......|+.+++.
T Consensus 425 ~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 425 APFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred CCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 44443321 13444455545779999999999987543333456666653
No 149
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.35 E-value=2.1e-11 Score=137.07 Aligned_cols=212 Identities=22% Similarity=0.293 Sum_probs=134.0
Q ss_pred ccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc------------------
Q 006534 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA------------------ 389 (641)
Q Consensus 328 ~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el------------------ 389 (641)
...|+||.|++.+++.+.-.+ ....+++|+||||||||++|+++++.+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 348999999999877655443 223579999999999999999998632
Q ss_pred ----------CCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHH
Q 006534 390 ----------EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 459 (641)
Q Consensus 390 ----------g~pfi~vs~se~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqL 459 (641)
..||...+++.......|.+...-...+..|.. .+|||||++.+... +++.|
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~~~~---------------~~~~L 315 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEFKRS---------------VLDAL 315 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhCCHH---------------HHHHH
Confidence 235554444333333333332222234455543 49999999987532 23344
Q ss_pred HhhhcCCC-----------CCCcEEEEEecCCC------C-----------------CCChhhhCCCCcceEEEecCCCH
Q 006534 460 LTEMDGFD-----------SNSAVIVLGATNRS------D-----------------VLDPALRRPGRFDRVVMVETPDK 505 (641)
Q Consensus 460 L~emdg~~-----------~~~~ViVIaATN~p------d-----------------~LDpALlRpgRFd~~I~v~~Pd~ 505 (641)
+..|+... ...++.+|+++|.- + .+...|+. |||.++.++.++.
T Consensus 316 ~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~ 393 (499)
T TIGR00368 316 REPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPP 393 (499)
T ss_pred HHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCH
Confidence 44443221 13478999999962 1 58888888 9999999997654
Q ss_pred HH-------------HHHHHHHHHhc----CCC---CCCCCCC-------------HHH---HHHhCCCCCHHHHHHHHH
Q 006534 506 IG-------------REAILKVHVSK----KEL---PLAKDID-------------LGD---IASMTTGFTGADLANLVN 549 (641)
Q Consensus 506 ~e-------------R~~IL~~~l~~----~~l---~l~~dvd-------------l~~---LA~~t~GfSgaDL~~Lv~ 549 (641)
.+ |..+.+.+-.+ .+. .+..++. ... -+....++|.+-...+++
T Consensus 394 ~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilr 473 (499)
T TIGR00368 394 EKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILK 473 (499)
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 32 22222211110 010 1111111 111 122334689999999999
Q ss_pred HHHHHHHhcCCccccHHHHHHHHH
Q 006534 550 EAALLAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 550 eAa~~A~r~~~~~It~~d~~~Al~ 573 (641)
-|..+|..++...|+.+|+.+|+.
T Consensus 474 vArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 474 VARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHHHHhhcCCCCCCHHHHHHHHh
Confidence 999999999999999999999974
No 150
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.34 E-value=8.1e-12 Score=132.77 Aligned_cols=137 Identities=19% Similarity=0.243 Sum_probs=99.2
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH--HhhcchHH----------HHHHHHHHHhcCCceEEEcc
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL--YVGMGASR----------VRDLFARAKKEAPSIIFIDE 432 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~--~vG~~~~~----------vr~lF~~A~~~aP~ILfIDE 432 (641)
.++|||.||||||||++|+.+|.+++.|++.+++...+.. +.|...-. ....+..|.. .++++++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 3579999999999999999999999999999988766554 34432111 1123444443 467899999
Q ss_pred hhhhhhhcCCcccccchhHHHHHHHHHHhh-----h----cCCCCCCcEEEEEecCCCC------------CCChhhhCC
Q 006534 433 IDAVAKSRDGRFRIVSNDEREQTLNQLLTE-----M----DGFDSNSAVIVLGATNRSD------------VLDPALRRP 491 (641)
Q Consensus 433 IDaL~~~r~~~~~~~~~~e~~~~LnqLL~e-----m----dg~~~~~~ViVIaATN~pd------------~LDpALlRp 491 (641)
||...+.. ...|+.+|.. + +.+.....+.||||.|..+ .+++|++.
T Consensus 143 in~a~p~~------------~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 143 YDAGRPDV------------MFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhccCHHH------------HHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 99874332 2344555542 1 1123445799999999853 56899998
Q ss_pred CCcceEEEecCCCHHHHHHHHHHHH
Q 006534 492 GRFDRVVMVETPDKIGREAILKVHV 516 (641)
Q Consensus 492 gRFd~~I~v~~Pd~~eR~~IL~~~l 516 (641)
||-..+.++.|+.++-.+|+....
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhc
Confidence 998788999999999999998765
No 151
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.34 E-value=1.9e-11 Score=130.79 Aligned_cols=67 Identities=39% Similarity=0.573 Sum_probs=53.7
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC--CCeEEeehhhHHH
Q 006534 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVE 403 (641)
Q Consensus 330 tf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg--~pfi~vs~se~v~ 403 (641)
..+.++|+.++++..--+++..+.. .-..+++||.||||||||.||-++|+++| +||+.++++++.+
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~-------K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEG-------KIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred ccccccChHHHHHHHHHHHHHHhcc-------cccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 3568999999999999999888763 34568999999999999999999999996 9999999998854
No 152
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.33 E-value=4.7e-11 Score=123.27 Aligned_cols=100 Identities=21% Similarity=0.215 Sum_probs=80.0
Q ss_pred EEEEEecCC-------------CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCC
Q 006534 472 VIVLGATNR-------------SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (641)
Q Consensus 472 ViVIaATN~-------------pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~G 538 (641)
-+||.|||+ |.-+++.|+. |+ ..|..-+++.++.++|++..++..++.++++ .+..++.....
T Consensus 326 PivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~-a~~~l~~~gt~ 401 (456)
T KOG1942|consen 326 PIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEE-ALDLLAEIGTS 401 (456)
T ss_pred ceEEEecCCcceeecCCcCCCCCCCCCHHHhh--he-eEEeeccCCHHHHHHHHHHHHhhhcceecHH-HHHHHHhhccc
Confidence 467778886 4667788877 65 2556667888999999999998888888766 47788887766
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHH
Q 006534 539 FTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (641)
Q Consensus 539 fSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~rv 575 (641)
-|-+...+++.-|.++|...+++.|..+|++++-+-.
T Consensus 402 tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf 438 (456)
T KOG1942|consen 402 TSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELF 438 (456)
T ss_pred hhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHH
Confidence 7788888899989999999999999999999876543
No 153
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.33 E-value=2.9e-12 Score=145.44 Aligned_cols=210 Identities=22% Similarity=0.290 Sum_probs=132.7
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHH
Q 006534 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (641)
Q Consensus 326 ~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v 402 (641)
.+..+|++++|.+...+++.+.+..+.. ...+|||+|++|||||++|++|+... +.||+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVAR----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 4457899999999999988888776532 34569999999999999999999874 6799999997663
Q ss_pred HHH-----hhcch-------HHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC---
Q 006534 403 ELY-----VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--- 467 (641)
Q Consensus 403 ~~~-----vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~--- 467 (641)
+.. .|... ......|+.| ...+|||||||.|....+ ..|+..++.-.
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~~~Q---------------~~Ll~~l~~~~~~~ 321 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISPAFQ---------------AKLLRVLQEGEFER 321 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCHHHH---------------HHHHHHHhcCcEEE
Confidence 321 11110 0001123333 245999999999965433 33444443211
Q ss_pred --C----CCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHH----HHHHHHHhc----CC--CCCC
Q 006534 468 --S----NSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGRE----AILKVHVSK----KE--LPLA 524 (641)
Q Consensus 468 --~----~~~ViVIaATN~p-------d~LDpALlRpgRFd~~I~v~~Pd~~eR~----~IL~~~l~~----~~--l~l~ 524 (641)
. ...+.+|++|+.. ..+.+.|.. |+. .+.+..|+..+|. .+++.++.+ .+ ..++
T Consensus 322 ~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s 398 (534)
T TIGR01817 322 VGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTIT 398 (534)
T ss_pred CCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--Hhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCC
Confidence 1 1257899998764 123333333 333 4556666666653 344444432 22 2333
Q ss_pred CCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHH
Q 006534 525 KDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (641)
Q Consensus 525 ~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~ 570 (641)
++ .+..|..+.+--+.++|+++++.|+..+ ....|+.+|+..
T Consensus 399 ~~-a~~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~~ 440 (534)
T TIGR01817 399 PS-AIRVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFSC 440 (534)
T ss_pred HH-HHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCch
Confidence 33 2566666665557899999999998765 456788888753
No 154
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.32 E-value=1.2e-11 Score=139.67 Aligned_cols=208 Identities=22% Similarity=0.290 Sum_probs=132.9
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHH--
Q 006534 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-- 404 (641)
Q Consensus 330 tf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~-- 404 (641)
++.+++|.+...+.+.+.+..+. ..+.+|||+|++||||+++|+++.... +.||+.++|..+-+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 57889999999998888887643 235579999999999999999998874 689999999876432
Q ss_pred ---Hhhcch-------HHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC-------
Q 006534 405 ---YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD------- 467 (641)
Q Consensus 405 ---~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~------- 467 (641)
..|... ......|+.|. ..+|||||||.|....+ ..|+..++.-.
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~~~~Q---------------~~Ll~~l~~~~~~~~g~~ 316 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELPLALQ---------------AKLLRVLQYGEIQRVGSD 316 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCCHHHH---------------HHHHHHHhcCCEeeCCCC
Confidence 112100 00112355443 34899999999975433 33333333211
Q ss_pred --CCCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHh----cCC---CCCCCCC
Q 006534 468 --SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVS----KKE---LPLAKDI 527 (641)
Q Consensus 468 --~~~~ViVIaATN~p-------d~LDpALlRpgRFd~~I~v~~Pd~~eR~~----IL~~~l~----~~~---l~l~~dv 527 (641)
...++.+|++||.. ..+.+.|.. |+. .+.+..|+..+|.+ +++.++. +.+ ..+.++
T Consensus 317 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~- 392 (509)
T PRK05022 317 RSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPA- 392 (509)
T ss_pred cceecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHH-
Confidence 12368899999875 123444443 443 56778888888754 3333332 212 233333
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCC---ccccHHHHH
Q 006534 528 DLGDIASMTTGFTGADLANLVNEAALLAGRLNK---VVVEKIDFI 569 (641)
Q Consensus 528 dl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~---~~It~~d~~ 569 (641)
.+..|..+.+--+.++|++++++|+..+..... ..|+.+++.
T Consensus 393 a~~~L~~y~WPGNvrEL~~~i~ra~~~~~~~~~~~~~~i~~~~l~ 437 (509)
T PRK05022 393 AQAALLAYDWPGNVRELEHVISRAALLARARGAGRIVTLEAQHLD 437 (509)
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhcCCCccCccceecHHHcC
Confidence 256666666666889999999999988753211 246666654
No 155
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.32 E-value=1.3e-11 Score=132.06 Aligned_cols=194 Identities=23% Similarity=0.259 Sum_probs=123.8
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHH--
Q 006534 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-- 404 (641)
Q Consensus 330 tf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~-- 404 (641)
.+++++|.+...+.+.+.+..+. ..+.+|||+|++||||+++|+++.... +.||+.++|..+-+.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 36789999999988888776643 234579999999999999999998764 579999999875321
Q ss_pred ---Hhhcch-------HHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC-------
Q 006534 405 ---YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD------- 467 (641)
Q Consensus 405 ---~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~------- 467 (641)
..|... ......|..|. ..+|||||||.|....+ ..|+..++.-.
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~~~~Q---------------~~L~~~l~~~~~~~~g~~ 135 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAPMLVQ---------------EKLLRVIEYGELERVGGS 135 (326)
T ss_pred HHHHccccccccCCcccccCCchhccC---CCeEEeCChhhCCHHHH---------------HHHHHHHhcCcEEeCCCC
Confidence 112110 01123344443 34999999999965433 23333332211
Q ss_pred --CCCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHH----hcCCCC----CCCC
Q 006534 468 --SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHV----SKKELP----LAKD 526 (641)
Q Consensus 468 --~~~~ViVIaATN~p-------d~LDpALlRpgRFd~~I~v~~Pd~~eR~~----IL~~~l----~~~~l~----l~~d 526 (641)
...++.||++|+.. ..+.+.|.. ||. .+.+..|+..+|.+ +++.++ .+.+.+ ++++
T Consensus 136 ~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~ 212 (326)
T PRK11608 136 QPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTER 212 (326)
T ss_pred ceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence 12358899988764 345566665 664 45677777777753 344433 222222 2333
Q ss_pred CCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 006534 527 IDLGDIASMTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 527 vdl~~LA~~t~GfSgaDL~~Lv~eAa~~A 555 (641)
.+..|..+.+--+.++|++++++|+..+
T Consensus 213 -al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 213 -ARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred -HHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 2555666665557799999999998765
No 156
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.31 E-value=1.1e-11 Score=140.50 Aligned_cols=207 Identities=20% Similarity=0.278 Sum_probs=130.4
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH
Q 006534 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (641)
Q Consensus 327 ~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~ 403 (641)
...+|++++|.+...+++.+.+..+.. ....|||+|++||||+++|+++.... +.||+.++|+.+-+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 456899999999988777766654322 23469999999999999999997654 57999999987643
Q ss_pred H-----Hhhcch-------HHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcC--C---
Q 006534 404 L-----YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG--F--- 466 (641)
Q Consensus 404 ~-----~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg--~--- 466 (641)
. ..|... .....+|+.|. ...|||||||.|....+ ..|+..++. +
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~~~~Q---------------~~Ll~~l~~~~~~~~ 330 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMSPRMQ---------------AKLLRFLNDGTFRRV 330 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCCHHHH---------------HHHHHHHhcCCcccC
Confidence 2 112111 11123455554 34899999999965433 223333322 1
Q ss_pred ----CCCCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH----H----HHHHHhcCCC---CCC
Q 006534 467 ----DSNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----I----LKVHVSKKEL---PLA 524 (641)
Q Consensus 467 ----~~~~~ViVIaATN~p-------d~LDpALlRpgRFd~~I~v~~Pd~~eR~~----I----L~~~l~~~~l---~l~ 524 (641)
....++.||++|+.+ ..+.+.|.. |+. .+.+..|+..+|.+ + ++.+..+.+. .++
T Consensus 331 g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls 407 (520)
T PRK10820 331 GEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLA 407 (520)
T ss_pred CCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 112357899998764 234455554 554 47778888888763 2 3333333332 233
Q ss_pred CCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHH
Q 006534 525 KDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDF 568 (641)
Q Consensus 525 ~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~ 568 (641)
+++ +..|..+.+--+.++|++++.+|+..+ ....|+.+|+
T Consensus 408 ~~a-~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 408 ADL-NTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHH-HHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 332 455555555457799999999998765 3456777774
No 157
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.31 E-value=7.4e-11 Score=119.19 Aligned_cols=197 Identities=22% Similarity=0.324 Sum_probs=139.4
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhh
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE 400 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se 400 (641)
+..+.+.+.+++|.+.+|+.|.+-...+.. ..+.++|||+|..||||++|+||+.++. +..++.|+-++
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 345678999999999999998776655432 3566789999999999999999998876 67899999888
Q ss_pred HHHHHhhcchHHHHHHHHHHHhc-CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC--CCCCcEEEEEe
Q 006534 401 FVELYVGMGASRVRDLFARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--DSNSAVIVLGA 477 (641)
Q Consensus 401 ~v~~~vG~~~~~vr~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~--~~~~~ViVIaA 477 (641)
+.. +.++++..+.. ..-|||+|++-- -.+ +.....|-..|||- ..+.+|+|.||
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF-----------e~g---d~~yK~LKs~LeG~ve~rP~NVl~YAT 180 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLSF-----------EEG---DDAYKALKSALEGGVEGRPANVLFYAT 180 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCCC-----------CCC---chHHHHHHHHhcCCcccCCCeEEEEEe
Confidence 754 44566665543 345999999721 011 12234444555654 23468999999
Q ss_pred cCCCCCCChhh--------------------hCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCC-CCHHHH--HH
Q 006534 478 TNRSDVLDPAL--------------------RRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-IDLGDI--AS 534 (641)
Q Consensus 478 TN~pd~LDpAL--------------------lRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~d-vdl~~L--A~ 534 (641)
+|+-..|+..+ --+.||+..+.|.+++.++-..|+..++++.+++++++ .+.+.+ |.
T Consensus 181 SNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt 260 (287)
T COG2607 181 SNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWAT 260 (287)
T ss_pred cCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99865554222 12349999999999999999999999999888777532 233333 34
Q ss_pred hCCCCCHHHHHHHHHHH
Q 006534 535 MTTGFTGADLANLVNEA 551 (641)
Q Consensus 535 ~t~GfSgaDL~~Lv~eA 551 (641)
.-.|-||+-..+.++..
T Consensus 261 ~rg~RSGR~A~QF~~~~ 277 (287)
T COG2607 261 TRGGRSGRVAWQFIRDL 277 (287)
T ss_pred hcCCCccHhHHHHHHHH
Confidence 44567777777766553
No 158
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.31 E-value=1.1e-11 Score=132.87 Aligned_cols=190 Identities=22% Similarity=0.241 Sum_probs=119.8
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHH-----H
Q 006534 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-----Y 405 (641)
Q Consensus 334 V~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~-----~ 405 (641)
++|.+.+.+.+.+.+..+. ....+|||+|++||||+++|++|.... +.||+.++|..+.+. .
T Consensus 1 liG~S~~m~~~~~~~~~~a----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 4688888887777776543 234579999999999999999998755 579999999755321 1
Q ss_pred hhcch-------HHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC---------CCC
Q 006534 406 VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF---------DSN 469 (641)
Q Consensus 406 vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~---------~~~ 469 (641)
.|... ..-..+|+.|. ..+|||||||.|....+ ..|+..++.- ...
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L~~~~Q---------------~~Ll~~l~~~~~~~~g~~~~~~ 132 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATASLLVQ---------------EKLLRVIEYGEFERVGGSQTLQ 132 (329)
T ss_pred hccccccccCcccccCCchhhCC---CCEEEeCChHhCCHHHH---------------HHHHHHHHcCcEEecCCCceec
Confidence 12100 01122355443 34999999999965433 2333333221 112
Q ss_pred CcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHh----cCCC----CCCCCCCHH
Q 006534 470 SAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVS----KKEL----PLAKDIDLG 530 (641)
Q Consensus 470 ~~ViVIaATN~p-------d~LDpALlRpgRFd~~I~v~~Pd~~eR~~----IL~~~l~----~~~l----~l~~dvdl~ 530 (641)
.++.+|++|+.. ..+.+.|.. ||. .+.+..|+..+|.+ +++.++. +.+. .+.++ .+.
T Consensus 133 ~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~-a~~ 208 (329)
T TIGR02974 133 VDVRLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQ-ARE 208 (329)
T ss_pred cceEEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHH-HHH
Confidence 468899999864 234455555 554 46677888887754 3333332 2222 23333 256
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHH
Q 006534 531 DIASMTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 531 ~LA~~t~GfSgaDL~~Lv~eAa~~A 555 (641)
.|..+.+--+.++|++++++|+..+
T Consensus 209 ~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 209 QLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHhCCCCchHHHHHHHHHHHHHhC
Confidence 6666665557799999999988776
No 159
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.31 E-value=4.2e-11 Score=128.00 Aligned_cols=132 Identities=30% Similarity=0.378 Sum_probs=89.0
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHH------HHHHH--hcCC--ceEEEcchhh
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDL------FARAK--KEAP--SIIFIDEIDA 435 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~vG~~~~~vr~l------F~~A~--~~aP--~ILfIDEIDa 435 (641)
+++||.||||||||+||+.+|..++.+|+.+.|..........+...+... |.... -... +|+|+|||+.
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 469999999999999999999999999999998755443221121111111 00000 0011 4999999987
Q ss_pred hhhhcCCcccccchhHHHHHHHHHHhhhcC----------CCCCCcEEEEEecC-----CCCCCChhhhCCCCcceEEEe
Q 006534 436 VAKSRDGRFRIVSNDEREQTLNQLLTEMDG----------FDSNSAVIVLGATN-----RSDVLDPALRRPGRFDRVVMV 500 (641)
Q Consensus 436 L~~~r~~~~~~~~~~e~~~~LnqLL~emdg----------~~~~~~ViVIaATN-----~pd~LDpALlRpgRFd~~I~v 500 (641)
..+. +.+.|+..|+. +.-..+++||+|.| ....|++|+++ ||...+.+
T Consensus 124 a~p~---------------~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v 186 (329)
T COG0714 124 APPE---------------VQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYV 186 (329)
T ss_pred CCHH---------------HHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEec
Confidence 6533 33556666554 34456889999999 44678999999 99889999
Q ss_pred cCCCHHHHHHHHHH
Q 006534 501 ETPDKIGREAILKV 514 (641)
Q Consensus 501 ~~Pd~~eR~~IL~~ 514 (641)
+.|+.++-..++..
T Consensus 187 ~yp~~~~e~~~i~~ 200 (329)
T COG0714 187 DYPDSEEEERIILA 200 (329)
T ss_pred CCCCchHHHHHHHH
Confidence 99954444444333
No 160
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.31 E-value=2.5e-11 Score=137.12 Aligned_cols=223 Identities=20% Similarity=0.166 Sum_probs=132.0
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCC-CeEEe---ehhhHHHHHhh-
Q 006534 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-PFISC---SASEFVELYVG- 407 (641)
Q Consensus 333 DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~-pfi~v---s~se~v~~~vG- 407 (641)
+|.|++.+|..+.-.+-.-..+..-.....+...+|||+|+||||||++|++++..+.. +|... ++..+......
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~ 283 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRD 283 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEc
Confidence 58899998776644332211110000011233447999999999999999999997753 33321 22222110000
Q ss_pred --cchHHH-HHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC-----------CCCcEE
Q 006534 408 --MGASRV-RDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSAVI 473 (641)
Q Consensus 408 --~~~~~v-r~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~-----------~~~~Vi 473 (641)
.++..+ ...+..| ...+++|||+|.+....+ ..|+..|+.-. -+..+.
T Consensus 284 ~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~~~~q---------------~~L~e~me~~~i~i~k~G~~~~l~~~~~ 345 (509)
T smart00350 284 PETREFTLEGGALVLA---DNGVCCIDEFDKMDDSDR---------------TAIHEAMEQQTISIAKAGITTTLNARCS 345 (509)
T ss_pred cCcceEEecCccEEec---CCCEEEEechhhCCHHHH---------------HHHHHHHhcCEEEEEeCCEEEEecCCcE
Confidence 000000 0111222 234999999999854322 33444443211 135689
Q ss_pred EEEecCCCC-------------CCChhhhCCCCcceEEEe-cCCCHHHHHHHHHHHHhcCC------C-CC---------
Q 006534 474 VLGATNRSD-------------VLDPALRRPGRFDRVVMV-ETPDKIGREAILKVHVSKKE------L-PL--------- 523 (641)
Q Consensus 474 VIaATN~pd-------------~LDpALlRpgRFd~~I~v-~~Pd~~eR~~IL~~~l~~~~------l-~l--------- 523 (641)
||||+|+.+ .|++++++ |||..+.+ +.|+.+...+|++..+.... . ..
T Consensus 346 viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l 423 (509)
T smart00350 346 VLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFL 423 (509)
T ss_pred EEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHH
Confidence 999999752 68999999 99987655 78999888888877543210 0 00
Q ss_pred -----------CCCCC---HHHHH-----Hh----------CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 006534 524 -----------AKDID---LGDIA-----SM----------TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (641)
Q Consensus 524 -----------~~dvd---l~~LA-----~~----------t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~r 574 (641)
.+.+. .+.|. .+ ..+.|++.+..+++-|...|..+.+..|+.+|+.+|++=
T Consensus 424 ~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l 503 (509)
T smart00350 424 RKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRL 503 (509)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 00010 11111 01 235688999999999999999999999999999999864
Q ss_pred H
Q 006534 575 S 575 (641)
Q Consensus 575 v 575 (641)
+
T Consensus 504 ~ 504 (509)
T smart00350 504 L 504 (509)
T ss_pred H
Confidence 4
No 161
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.30 E-value=5.3e-11 Score=141.55 Aligned_cols=196 Identities=26% Similarity=0.335 Sum_probs=128.3
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCe-eEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHH---
Q 006534 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRG-VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL--- 404 (641)
Q Consensus 332 ~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkg-VLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~--- 404 (641)
..|+|++++.+.+.+.+...+..-. ....|.+ +||+||||||||.+|+++|..+ ...++.++++++.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLE----DPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCC----CCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 3689999999988887765321100 0134555 7999999999999999999988 458899999988653
Q ss_pred ---------HhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC--------
Q 006534 405 ---------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-------- 467 (641)
Q Consensus 405 ---------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~-------- 467 (641)
|+|.... ..+.+..+....+||+|||||.+.+ .+.+.|++.+|.-.
T Consensus 642 ~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~~---------------~v~~~Llq~ld~g~l~d~~Gr~ 704 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAHP---------------DVLELFYQVFDKGVMEDGEGRE 704 (852)
T ss_pred ccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcCH---------------HHHHHHHHHhhcceeecCCCcE
Confidence 3333221 1233444567778999999986532 23455666555321
Q ss_pred -CCCcEEEEEecCCCC-----------------------------CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHh
Q 006534 468 -SNSAVIVLGATNRSD-----------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS 517 (641)
Q Consensus 468 -~~~~ViVIaATN~pd-----------------------------~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~ 517 (641)
.-.+.++|.|||... .+.|+++. |++ .|.|.+.+.++..+|+...+.
T Consensus 705 vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 705 IDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred EeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 013578888988521 14566666 887 889999999999999887764
Q ss_pred cC--------CC--CCCCCCCHHHHHHhCCC--CCHHHHHHHHHHHH
Q 006534 518 KK--------EL--PLAKDIDLGDIASMTTG--FTGADLANLVNEAA 552 (641)
Q Consensus 518 ~~--------~l--~l~~dvdl~~LA~~t~G--fSgaDL~~Lv~eAa 552 (641)
+. ++ .++++ ..+.|+....+ +-.+.|.++++.-.
T Consensus 782 ~l~~rl~~~~gi~l~i~d~-a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 782 RIARRLKENHGAELVYSEA-LVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred HHHHHHHHhcCceEEECHH-HHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 31 22 22322 25556665432 34677777776644
No 162
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.30 E-value=4.4e-11 Score=137.56 Aligned_cols=105 Identities=24% Similarity=0.367 Sum_probs=69.3
Q ss_pred CcEEEEEecCCC--CCCChhhhCCCCcc---eEEEec--CCC-HHHHHHHHHH---HHhcCC-CC-CCCCCCHHHHHH--
Q 006534 470 SAVIVLGATNRS--DVLDPALRRPGRFD---RVVMVE--TPD-KIGREAILKV---HVSKKE-LP-LAKDIDLGDIAS-- 534 (641)
Q Consensus 470 ~~ViVIaATN~p--d~LDpALlRpgRFd---~~I~v~--~Pd-~~eR~~IL~~---~l~~~~-l~-l~~dvdl~~LA~-- 534 (641)
..+.||+++|+. ..++++++. ||+ ..+.++ .|+ .+.+.++++. .+++.+ .+ ++++ .+..|.+
T Consensus 267 ~dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~-Av~~Li~~~ 343 (608)
T TIGR00764 267 CDFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRD-AVEEIVREA 343 (608)
T ss_pred cceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHH-HHHHHHHHH
Confidence 368899999975 578999998 998 666664 344 5555544443 333321 22 2222 1333321
Q ss_pred -hCC------CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhc
Q 006534 535 -MTT------GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 535 -~t~------GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~rvi~ 577 (641)
+.. ..+.++|.+++++|...|..+++..|+.+|+.+|++....
T Consensus 344 ~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~~ 393 (608)
T TIGR00764 344 QRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAKT 393 (608)
T ss_pred HHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHHH
Confidence 111 1357999999999988888888899999999999886543
No 163
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.30 E-value=9.3e-11 Score=130.14 Aligned_cols=214 Identities=16% Similarity=0.132 Sum_probs=126.7
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCC--CeEEeehhh-HHHHHhhcc
Q 006534 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASE-FVELYVGMG 409 (641)
Q Consensus 333 DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~--pfi~vs~se-~v~~~vG~~ 409 (641)
.|+|.+++.+.+...+. ...+|||+||||||||++|++++..++. +|....+.- ..+...|..
T Consensus 21 ~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 47888887776655542 2346999999999999999999997642 555444321 111222211
Q ss_pred -hHHH--HHHHHHHHhc---CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC--------CCCcEEEE
Q 006534 410 -ASRV--RDLFARAKKE---APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVL 475 (641)
Q Consensus 410 -~~~v--r~lF~~A~~~---aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~--------~~~~ViVI 475 (641)
.... ..-|.....+ ...+||+|||..+.++ +.+.||..|+.-. .-+..+++
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~---------------~QsaLLeam~Er~~t~g~~~~~lp~rfiv 151 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPA---------------ILNTLLTAINERRFRNGAHEEKIPMRLLV 151 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccCCHH---------------HHHHHHHHHHhCeEecCCeEEeCCCcEEE
Confidence 0110 1123222211 2339999999866533 4466777763211 01123445
Q ss_pred EecCCCC---CCChhhhCCCCcceEEEecCCC-HHHHHHHHHHHHhc--CCC---------------------CCCCCC-
Q 006534 476 GATNRSD---VLDPALRRPGRFDRVVMVETPD-KIGREAILKVHVSK--KEL---------------------PLAKDI- 527 (641)
Q Consensus 476 aATN~pd---~LDpALlRpgRFd~~I~v~~Pd-~~eR~~IL~~~l~~--~~l---------------------~l~~dv- 527 (641)
+|||... ...++++. ||-..+.+++|+ .++-.++|...... ... .+++.+
T Consensus 152 ~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~ 229 (498)
T PRK13531 152 TASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVF 229 (498)
T ss_pred EECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHH
Confidence 5557432 23358888 998889999996 45557777654221 101 111111
Q ss_pred -CHHHHHHh---C---CCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcc
Q 006534 528 -DLGDIASM---T---TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAG 578 (641)
Q Consensus 528 -dl~~LA~~---t---~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~rvi~g 578 (641)
-+..|... + ...|++-...+++-|...|...++..|+.+|+. .+..++..
T Consensus 230 eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~H 286 (498)
T PRK13531 230 ELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWH 286 (498)
T ss_pred HHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhcc
Confidence 01122221 2 237889999999999999999999999999998 55555543
No 164
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.29 E-value=1.1e-11 Score=143.63 Aligned_cols=211 Identities=20% Similarity=0.270 Sum_probs=133.3
Q ss_pred ccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH-
Q 006534 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE- 403 (641)
Q Consensus 328 ~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~- 403 (641)
..+|++++|.+.+.+++.+.+..+.. ...+|||+|++||||+++|+++.... +.||+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAK----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 45799999999988887777665322 23469999999999999999999865 57999999976532
Q ss_pred ----HHhhcc----hHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC-----CC--
Q 006534 404 ----LYVGMG----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----DS-- 468 (641)
Q Consensus 404 ----~~vG~~----~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~-----~~-- 468 (641)
...|.. .......|+.| ...+||||||+.|....+ ..|+..++.- .+
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~~~Q---------------~~Ll~~l~~~~~~~~~~~~ 452 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSPELQ---------------SALLQVLKTGVITRLDSRR 452 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCHHHH---------------HHHHHHHhcCcEEeCCCCc
Confidence 222211 00011123333 245999999999965443 2333333321 11
Q ss_pred --CCcEEEEEecCCCCCCChhhhCCCCcc-------eEEEecCCCHHHHHH----HHHHHHhc----CC--CCCCCCCCH
Q 006534 469 --NSAVIVLGATNRSDVLDPALRRPGRFD-------RVVMVETPDKIGREA----ILKVHVSK----KE--LPLAKDIDL 529 (641)
Q Consensus 469 --~~~ViVIaATN~pd~LDpALlRpgRFd-------~~I~v~~Pd~~eR~~----IL~~~l~~----~~--l~l~~dvdl 529 (641)
..++.+|+||+.. + ..+...|+|. ..+.+..|+..+|.+ +++.++.+ .+ +.+.++ .+
T Consensus 453 ~~~~~~riI~~t~~~--l-~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~-a~ 528 (638)
T PRK11388 453 LIPVDVRVIATTTAD--L-AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDD-AL 528 (638)
T ss_pred eEEeeEEEEEeccCC--H-HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHH-HH
Confidence 1257899999864 1 1222223332 156778888888853 33333332 11 233433 35
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 006534 530 GDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 530 ~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~ 573 (641)
..|..+...-+.++|+++++.|+..+ ....|+.+|+...+.
T Consensus 529 ~~L~~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~~ 569 (638)
T PRK11388 529 ARLVSYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHLF 569 (638)
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhhh
Confidence 66666665558899999999988765 445788888876663
No 165
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.28 E-value=5.2e-11 Score=142.03 Aligned_cols=203 Identities=21% Similarity=0.305 Sum_probs=131.1
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHH----
Q 006534 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL---- 404 (641)
Q Consensus 332 ~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~---- 404 (641)
..|+|++++.+.+.+.+......-. -..++...+||+||+|||||++|+++|..+ +.+++.++++++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~---~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLS---DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCC---CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 4699999999999888875321000 011334568999999999999999999976 578999999887542
Q ss_pred -Hhhcc-----hHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC---------CC
Q 006534 405 -YVGMG-----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SN 469 (641)
Q Consensus 405 -~vG~~-----~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~---------~~ 469 (641)
..|.. ...-..+....+....+||+|||||.+.+ .+.+.|+..|+.-. .-
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~---------------~v~~~Ll~~l~~g~l~d~~g~~vd~ 706 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP---------------DVFNVLLQVLDDGRLTDGQGRTVDF 706 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH---------------HHHHHHHHHHhcCceecCCCeEEec
Confidence 12211 11112233444455557999999997743 23455666554221 11
Q ss_pred CcEEEEEecCCCC-------------------------CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc------
Q 006534 470 SAVIVLGATNRSD-------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK------ 518 (641)
Q Consensus 470 ~~ViVIaATN~pd-------------------------~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~------ 518 (641)
.+.+||+|||... .+.|.|+. |+|.++.+.+++.++..+|+...+..
T Consensus 707 rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~ 784 (852)
T TIGR03346 707 RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLA 784 (852)
T ss_pred CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999731 13456665 99999999999999999988776642
Q ss_pred -CCC--CCCCCCCHHHHHHhCC--CCCHHHHHHHHHHHHHHH
Q 006534 519 -KEL--PLAKDIDLGDIASMTT--GFTGADLANLVNEAALLA 555 (641)
Q Consensus 519 -~~l--~l~~dvdl~~LA~~t~--GfSgaDL~~Lv~eAa~~A 555 (641)
.++ .++++ .++.|++... .+..+.|+++++......
T Consensus 785 ~~~~~l~i~~~-a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~ 825 (852)
T TIGR03346 785 ERKITLELSDA-ALDFLAEAGYDPVYGARPLKRAIQREIENP 825 (852)
T ss_pred HCCCeecCCHH-HHHHHHHhCCCCCCCchhHHHHHHHHHHHH
Confidence 222 22333 2555666532 456688888887766433
No 166
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.28 E-value=7.4e-11 Score=127.39 Aligned_cols=190 Identities=16% Similarity=0.181 Sum_probs=126.2
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCC-------CeEEe--
Q 006534 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISC-- 396 (641)
Q Consensus 326 ~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~-------pfi~v-- 396 (641)
..+..|++|+|++++++.|...+. ..+.|..+||+||+|+|||++|+.+|..+.+ |....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~-----------~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYR-----------EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHH-----------cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 346789999999999999988875 2456778999999999999999999998754 21110
Q ss_pred --ehhhHHHH--------H-h-------------hcchHHHHHHHHHHH----hcCCceEEEcchhhhhhhcCCcccccc
Q 006534 397 --SASEFVEL--------Y-V-------------GMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVS 448 (641)
Q Consensus 397 --s~se~v~~--------~-v-------------G~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~ 448 (641)
.|..+... + . .-+...+|++-+... .....|++|||+|.+..
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~---------- 155 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR---------- 155 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH----------
Confidence 11111000 0 0 011244555443332 23345999999999853
Q ss_pred hhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCC
Q 006534 449 NDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDID 528 (641)
Q Consensus 449 ~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvd 528 (641)
...|.||..++... .+.++|..|+.++.+.|.+++ |. ..+.+++|+.++..++|+...... .++++ .
T Consensus 156 -----~aanaLLk~LEEpp--~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~--~~~~~-~ 222 (351)
T PRK09112 156 -----NAANAILKTLEEPP--ARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQ--GSDGE-I 222 (351)
T ss_pred -----HHHHHHHHHHhcCC--CCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhccc--CCCHH-H
Confidence 23477888888633 344555556778888899987 65 499999999999999998753221 12222 2
Q ss_pred HHHHHHhCCCCCHHHHHHHHHH
Q 006534 529 LGDIASMTTGFTGADLANLVNE 550 (641)
Q Consensus 529 l~~LA~~t~GfSgaDL~~Lv~e 550 (641)
+..+++.+.| +++...++++.
T Consensus 223 ~~~i~~~s~G-~pr~Al~ll~~ 243 (351)
T PRK09112 223 TEALLQRSKG-SVRKALLLLNY 243 (351)
T ss_pred HHHHHHHcCC-CHHHHHHHHhc
Confidence 5667777766 77776666654
No 167
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.28 E-value=1.9e-10 Score=120.74 Aligned_cols=219 Identities=19% Similarity=0.244 Sum_probs=141.7
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---------CCCeEEeehh---
Q 006534 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSAS--- 399 (641)
Q Consensus 332 ~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---------g~pfi~vs~s--- 399 (641)
+.-+|++.+++.|..+.+.+..|.. ..+.++||+|++|.|||++++.++... .+|++.+...
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p 107 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEP 107 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCC
Confidence 3468999999999999999988854 344579999999999999999998753 3577777542
Q ss_pred ---hHHHHH---hh------c-chHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC
Q 006534 400 ---EFVELY---VG------M-GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 466 (641)
Q Consensus 400 ---e~v~~~---vG------~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~ 466 (641)
.|.... .| . ..+.-..+....+...+-+|+|||++.+.. |.....+.++|.|-...+.+
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa--------Gs~~~qr~~Ln~LK~L~NeL 179 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA--------GSYRKQREFLNALKFLGNEL 179 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc--------ccHHHHHHHHHHHHHHhhcc
Confidence 222110 00 1 112222334555667778999999999852 33445566666654443322
Q ss_pred CCCCcEEEEEecCCCC--CCChhhhCCCCcceEEEecCCC-HHHHHHHHHHHHhcCCCCCCCCCCH----HHHHHhCCCC
Q 006534 467 DSNSAVIVLGATNRSD--VLDPALRRPGRFDRVVMVETPD-KIGREAILKVHVSKKELPLAKDIDL----GDIASMTTGF 539 (641)
Q Consensus 467 ~~~~~ViVIaATN~pd--~LDpALlRpgRFd~~I~v~~Pd-~~eR~~IL~~~l~~~~l~l~~dvdl----~~LA~~t~Gf 539 (641)
.-.++.+++..-.. .-|+.+-+ ||+ .+.++... .++...++..+-..-.+.-..+..- ..|-..+.|
T Consensus 180 --~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G- 253 (302)
T PF05621_consen 180 --QIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEG- 253 (302)
T ss_pred --CCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCC-
Confidence 23455555433222 33778877 997 56666533 3455566666544322222222222 345567777
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccccHHHHHH
Q 006534 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (641)
Q Consensus 540 SgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~ 570 (641)
+.+++..+++.|+..|++.+++.||.+.++.
T Consensus 254 ~iG~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 254 LIGELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred chHHHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 5689999999999999999999999988765
No 168
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.27 E-value=9.5e-11 Score=139.66 Aligned_cols=166 Identities=25% Similarity=0.368 Sum_probs=110.7
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhhCCCCC-CeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHH-
Q 006534 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPP-RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY- 405 (641)
Q Consensus 331 f~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~p-kgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~~- 405 (641)
++.|+|++++.+.+.+.+...+..-. ....| ..+||+||||||||++|+++|..+ +.+|+.++++++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLS----DPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhccc----CCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 34699999999999888875431100 01123 358999999999999999999876 5689999999886531
Q ss_pred ----hhc-----chHHHHHHHHHH-HhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC--C------
Q 006534 406 ----VGM-----GASRVRDLFARA-KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--D------ 467 (641)
Q Consensus 406 ----vG~-----~~~~vr~lF~~A-~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~--~------ 467 (641)
.|. +... ...+..+ +....+||+|||++.+.+ .+.+.|+..++.. .
T Consensus 643 ~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~---------------~v~~~Ll~ile~g~l~d~~gr~ 706 (857)
T PRK10865 643 VSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHP---------------DVFNILLQVLDDGRLTDGQGRT 706 (857)
T ss_pred HHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCH---------------HHHHHHHHHHhhCceecCCceE
Confidence 111 1111 1122333 333347999999987643 2335555555421 1
Q ss_pred -CCCcEEEEEecCCC-------------------------CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc
Q 006534 468 -SNSAVIVLGATNRS-------------------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (641)
Q Consensus 468 -~~~~ViVIaATN~p-------------------------d~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~ 518 (641)
.-.+.++|+|||.. ..+.|+|+. |+|..+.+.+++.++...|++..+.+
T Consensus 707 vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 707 VDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred EeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 11345788899862 134567777 99999999999999999988877654
No 169
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.26 E-value=1.1e-10 Score=138.86 Aligned_cols=166 Identities=23% Similarity=0.317 Sum_probs=113.5
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCC-CeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH----
Q 006534 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPP-RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE---- 403 (641)
Q Consensus 332 ~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~p-kgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~---- 403 (641)
+.|+|++++++.+.+.+...+..-. ....| ..+||+||+|||||+||+++|..+ +.+++.++++++.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK----NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc----CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 4699999999999887764321000 11224 347999999999999999999987 46899999888743
Q ss_pred -HHhhcc-----hHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC---------C
Q 006534 404 -LYVGMG-----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------S 468 (641)
Q Consensus 404 -~~vG~~-----~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~---------~ 468 (641)
...|.. ......+.+..+....+||+|||+|.+.+ .+.+.|+..|+... .
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~---------------~v~~~Llq~le~g~~~d~~g~~v~ 649 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHP---------------DIFNLLLQILDDGRLTDSKGRTID 649 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCH---------------HHHHHHHHHhccCceecCCCcEEe
Confidence 222211 11123345555555558999999998743 34466666666421 1
Q ss_pred CCcEEEEEecCCCCC-------------------------------------CChhhhCCCCcceEEEecCCCHHHHHHH
Q 006534 469 NSAVIVLGATNRSDV-------------------------------------LDPALRRPGRFDRVVMVETPDKIGREAI 511 (641)
Q Consensus 469 ~~~ViVIaATN~pd~-------------------------------------LDpALlRpgRFd~~I~v~~Pd~~eR~~I 511 (641)
-.+.++|+|||.... +.|.++. |+|.+|.|.+.+.++..+|
T Consensus 650 ~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~I 727 (821)
T CHL00095 650 FKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEI 727 (821)
T ss_pred cCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHH
Confidence 246889999885311 2245565 9999999999999999999
Q ss_pred HHHHHhc
Q 006534 512 LKVHVSK 518 (641)
Q Consensus 512 L~~~l~~ 518 (641)
++..+.+
T Consensus 728 v~~~l~~ 734 (821)
T CHL00095 728 AEIMLKN 734 (821)
T ss_pred HHHHHHH
Confidence 8877653
No 170
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.26 E-value=1.7e-11 Score=133.29 Aligned_cols=199 Identities=26% Similarity=0.363 Sum_probs=131.4
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHh----cCCCeEEeehhhHH
Q 006534 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSASEFV 402 (641)
Q Consensus 327 ~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~e----lg~pfi~vs~se~v 402 (641)
....+++++|.+...+++.+-+..+ .+...+||++|++||||+++|+.+... .+.||+.+||..+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAY----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhh----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 4567899999999988888877652 233467999999999999999999753 36799999999875
Q ss_pred HH-------------HhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC---
Q 006534 403 EL-------------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--- 466 (641)
Q Consensus 403 ~~-------------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~--- 466 (641)
+. |.| ....-..+|++|..+ +||+|||+.|....+ ..|++.||.-
T Consensus 143 en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~LP~~~Q---------------~kLl~~le~g~~~ 203 (403)
T COG1221 143 ENLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRLPPEGQ---------------EKLLRVLEEGEYR 203 (403)
T ss_pred cCHHHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhCCHhHH---------------HHHHHHHHcCceE
Confidence 52 222 223334567777655 999999999975433 3455555531
Q ss_pred ------CCCCcEEEEEecCCCCCCChhhhC-CCCcc--eEEEecCCCHHHHHH--------HHHHHHhcCCCCCCCCC--
Q 006534 467 ------DSNSAVIVLGATNRSDVLDPALRR-PGRFD--RVVMVETPDKIGREA--------ILKVHVSKKELPLAKDI-- 527 (641)
Q Consensus 467 ------~~~~~ViVIaATN~pd~LDpALlR-pgRFd--~~I~v~~Pd~~eR~~--------IL~~~l~~~~l~l~~dv-- 527 (641)
.....|.+|+|||.. ++.+++. ..-+. -.+.+..|+..+|.+ +++..+.+.+.++..+.
T Consensus 204 rvG~~~~~~~dVRli~AT~~~--l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~ 281 (403)
T COG1221 204 RVGGSQPRPVDVRLICATTED--LEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPE 281 (403)
T ss_pred ecCCCCCcCCCceeeeccccC--HHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHH
Confidence 123478999999853 4443332 01111 134567777777753 34455555566655443
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 006534 528 DLGDIASMTTGFTGADLANLVNEAALLAG 556 (641)
Q Consensus 528 dl~~LA~~t~GfSgaDL~~Lv~eAa~~A~ 556 (641)
.+..+-....--+.++|+|+++.++..+.
T Consensus 282 a~~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 282 ALRALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 13333333333377999999999998884
No 171
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.25 E-value=2e-10 Score=124.64 Aligned_cols=187 Identities=18% Similarity=0.165 Sum_probs=124.8
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe-------E----
Q 006534 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------I---- 394 (641)
Q Consensus 326 ~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pf-------i---- 394 (641)
..+.++++|+|++++++.|.+.+.. .+.|..+||+||+|+||+++|.++|+.+-+.- .
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 3567899999999999999887752 46677899999999999999999999763210 0
Q ss_pred --E-e-ehhhH--HH---------HH---hh--------cchHHHHHHHHHHH----hcCCceEEEcchhhhhhhcCCcc
Q 006534 395 --S-C-SASEF--VE---------LY---VG--------MGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRF 444 (641)
Q Consensus 395 --~-v-s~se~--v~---------~~---vG--------~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~ 444 (641)
. + .|... +. .. .+ -....+|++.+.+. ...|.|++|||+|.+..
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------ 155 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------ 155 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH------
Confidence 0 0 11111 00 00 01 12345666655443 34567999999998853
Q ss_pred cccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCC
Q 006534 445 RIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLA 524 (641)
Q Consensus 445 ~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~ 524 (641)
...|.||..++.. ..+.++|.+|+.++.+.+.+++ |. ..+.+++|+.++-.++|...... ..
T Consensus 156 ---------~aanaLLK~LEep--p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~----~~ 217 (365)
T PRK07471 156 ---------NAANALLKVLEEP--PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD----LP 217 (365)
T ss_pred ---------HHHHHHHHHHhcC--CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc----CC
Confidence 3457888888743 3456777788888889888877 54 48999999999999888776421 11
Q ss_pred CCCCHHHHHHhCCCCCHHHHHHHHH
Q 006534 525 KDIDLGDIASMTTGFTGADLANLVN 549 (641)
Q Consensus 525 ~dvdl~~LA~~t~GfSgaDL~~Lv~ 549 (641)
+..+..++..+.| +++....+++
T Consensus 218 -~~~~~~l~~~s~G-sp~~Al~ll~ 240 (365)
T PRK07471 218 -DDPRAALAALAEG-SVGRALRLAG 240 (365)
T ss_pred -HHHHHHHHHHcCC-CHHHHHHHhc
Confidence 1123456666666 6655555543
No 172
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.24 E-value=1.7e-10 Score=118.63 Aligned_cols=192 Identities=14% Similarity=0.196 Sum_probs=118.8
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCC-CeE--E-e----ehhhHHHH---Hhhcc---h---H---HHHHHH-HHHHhcC
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEAEV-PFI--S-C----SASEFVEL---YVGMG---A---S---RVRDLF-ARAKKEA 424 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~elg~-pfi--~-v----s~se~v~~---~vG~~---~---~---~vr~lF-~~A~~~a 424 (641)
..++|+||+|+|||++++.+++++.. .+. . + +..++... ..|.. . . .+.+.+ .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35889999999999999999998752 222 1 1 11222211 11211 1 1 122222 2233556
Q ss_pred CceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCC--CCCCC----hhhhCCCCcceEE
Q 006534 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR--SDVLD----PALRRPGRFDRVV 498 (641)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~--pd~LD----pALlRpgRFd~~I 498 (641)
+.+|+|||+|.+.... ...+..+..... .....+.|+.+... .+.+. ..+.+ |+...+
T Consensus 124 ~~vliiDe~~~l~~~~------------~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~ 187 (269)
T TIGR03015 124 RALLVVDEAQNLTPEL------------LEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASC 187 (269)
T ss_pred CeEEEEECcccCCHHH------------HHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeee
Confidence 7799999999874211 122233322211 11222333333221 11221 22444 777788
Q ss_pred EecCCCHHHHHHHHHHHHhcCCC----CCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 006534 499 MVETPDKIGREAILKVHVSKKEL----PLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (641)
Q Consensus 499 ~v~~Pd~~eR~~IL~~~l~~~~l----~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~r 574 (641)
.+++.+.++..+++...+...+. .+.++ .++.|++.+.|. ++.+..+++.|...|..++...|+.+++++++..
T Consensus 188 ~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~-~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 188 HLGPLDREETREYIEHRLERAGNRDAPVFSEG-AFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEVREVIAE 265 (269)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHH-HHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 99999999999999988865332 34333 478888999885 5779999999999999999999999999999876
Q ss_pred H
Q 006534 575 S 575 (641)
Q Consensus 575 v 575 (641)
.
T Consensus 266 ~ 266 (269)
T TIGR03015 266 I 266 (269)
T ss_pred h
Confidence 4
No 173
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.24 E-value=1.5e-11 Score=134.65 Aligned_cols=197 Identities=27% Similarity=0.374 Sum_probs=129.3
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH
Q 006534 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (641)
Q Consensus 327 ~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~ 403 (641)
+...+.+|+|.+.+..++.+.++.... ..-.|||.|.+||||..+||+|.+.. +.||+.+||+.+-+
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~VA~----------Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVVAK----------SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHHhc----------CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 366788999999999999999887543 33479999999999999999999876 68999999987755
Q ss_pred HH-----hhcch-------HHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhc-----CC
Q 006534 404 LY-----VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD-----GF 466 (641)
Q Consensus 404 ~~-----vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd-----g~ 466 (641)
.. .|.-. ..-+.-|+.|..+ .||+|||..|...-| ..||..++ ..
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGG---TLFLDEIGelPL~lQ---------------aKLLRvLQegEieRv 349 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGG---TLFLDEIGELPLALQ---------------AKLLRVLQEGEIERV 349 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCC---eEechhhccCCHHHH---------------HHHHHHHhhcceeec
Confidence 32 11100 0112234444433 899999988865433 23444333 23
Q ss_pred CCC----CcEEEEEecCCCCCCChhhhCCCCcce-------EEEecCCCHHHHHH--------HHHHHHhcCC---CCCC
Q 006534 467 DSN----SAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA--------ILKVHVSKKE---LPLA 524 (641)
Q Consensus 467 ~~~----~~ViVIaATN~pd~LDpALlRpgRFd~-------~I~v~~Pd~~eR~~--------IL~~~l~~~~---l~l~ 524 (641)
.++ -.|.||||||+. |..++. .|+|-. ++.+..|+..+|.+ +++.+..+.+ +.++
T Consensus 350 G~~r~ikVDVRiIAATNRD--L~~~V~-~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls 426 (550)
T COG3604 350 GGDRTIKVDVRVIAATNRD--LEEMVR-DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLS 426 (550)
T ss_pred CCCceeEEEEEEEeccchh--HHHHHH-cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccC
Confidence 222 268999999984 433333 355521 55666788888853 2222222222 2233
Q ss_pred CCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 006534 525 KDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 525 ~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A 555 (641)
.+ .++.|..+..--+.++|++++++|+..|
T Consensus 427 ~~-Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 427 AE-ALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HH-HHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 33 2555665554447799999999999988
No 174
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.23 E-value=3.8e-11 Score=132.68 Aligned_cols=206 Identities=24% Similarity=0.340 Sum_probs=135.1
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHH-
Q 006534 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL- 404 (641)
Q Consensus 329 vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~- 404 (641)
..+.+++|.+.+.+++.+.+..+... ...|||+|++||||.++|++|.+.. +.||+.+||..+-+.
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPS----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 45778999999999999999876443 3479999999999999999999876 569999999755332
Q ss_pred ----Hhhc------c-hHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcC-----CCC
Q 006534 405 ----YVGM------G-ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FDS 468 (641)
Q Consensus 405 ----~vG~------~-~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg-----~~~ 468 (641)
..|. + ..+-...|+.|..+ .||||||..+...-| ..||..++. ..+
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~mpl~~Q---------------~kLLRvLqe~~~~rvG~ 269 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEMPLELQ---------------VKLLRVLQEREFERVGG 269 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccCCHHHH---------------HHHHHHHHcCeeEecCC
Confidence 2221 1 11123456666555 999999998865443 334444432 222
Q ss_pred ----CCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH--------HHHHHHhcCCCCCCCCCCH
Q 006534 469 ----NSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA--------ILKVHVSKKELPLAKDIDL 529 (641)
Q Consensus 469 ----~~~ViVIaATN~p-------d~LDpALlRpgRFd~~I~v~~Pd~~eR~~--------IL~~~l~~~~l~l~~dvdl 529 (641)
+-.|.||+|||+. ..+-+.|.- |+. ++.+..|...+|.+ +++.+..+.+.+ ...++-
T Consensus 270 ~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~-~~~~s~ 345 (464)
T COG2204 270 NKPIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRP-PKGFSP 345 (464)
T ss_pred CcccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCC-CCCCCH
Confidence 2368999999975 122333333 443 77888999998875 333444333322 233444
Q ss_pred HHH---HHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHH
Q 006534 530 GDI---ASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (641)
Q Consensus 530 ~~L---A~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~ 569 (641)
+.+ ..+.+--+.++|+|++++++..+ ....|+.+++.
T Consensus 346 ~a~~~L~~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l~ 385 (464)
T COG2204 346 EALAALLAYDWPGNVRELENVVERAVILS---EGPEIEVEDLP 385 (464)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHhcC---Cccccchhhcc
Confidence 444 33333335699999999998877 44556666654
No 175
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.23 E-value=2.7e-11 Score=108.40 Aligned_cols=126 Identities=33% Similarity=0.448 Sum_probs=83.3
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCCC---eEEeehhhHHHH--------------HhhcchHHHHHHHHHHHhcCCce
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSASEFVEL--------------YVGMGASRVRDLFARAKKEAPSI 427 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~elg~p---fi~vs~se~v~~--------------~vG~~~~~vr~lF~~A~~~aP~I 427 (641)
+..++|+||||||||++++++|..+..+ ++.++++..... .........+.++..++...|++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999998765 888877654331 12345566778888888887899
Q ss_pred EEEcchhhhhhhcCCcccccchhHHHHHHHHH--HhhhcCCCCCCcEEEEEecCC-CCCCChhhhCCCCcceEEEecCC
Q 006534 428 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL--LTEMDGFDSNSAVIVLGATNR-SDVLDPALRRPGRFDRVVMVETP 503 (641)
Q Consensus 428 LfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqL--L~emdg~~~~~~ViVIaATN~-pd~LDpALlRpgRFd~~I~v~~P 503 (641)
|+|||++.+....... ..... ..............+|+++|. ....+..+.+ |++.++.+..+
T Consensus 82 iiiDei~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEA-----------LLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHH-----------HHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 9999999986443210 00000 000011122345688888886 3334444444 88888887655
No 176
>PHA02244 ATPase-like protein
Probab=99.23 E-value=3.4e-10 Score=121.99 Aligned_cols=148 Identities=24% Similarity=0.331 Sum_probs=92.7
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHH--h
Q 006534 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY--V 406 (641)
Q Consensus 329 vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~--v 406 (641)
+.+.-+.+..........+..++.. +.+|||+||||||||++|+++|..++.||+.++.. .+.+ .
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~-----------~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~ 160 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNA-----------NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELK 160 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhc-----------CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhc
Confidence 3343344444444455555544433 34699999999999999999999999999999842 2211 1
Q ss_pred hc--chHHH-HHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhh-----hcC-CCCCCcEEEEEe
Q 006534 407 GM--GASRV-RDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE-----MDG-FDSNSAVIVLGA 477 (641)
Q Consensus 407 G~--~~~~v-r~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~e-----mdg-~~~~~~ViVIaA 477 (641)
|. ....+ ..-|-.|.. ...+|+|||++.+.+.. ...|+.++.. .++ +....++.+|+|
T Consensus 161 G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~p~v------------q~~L~~lLd~r~l~l~g~~i~~h~~FRlIAT 227 (383)
T PHA02244 161 GFIDANGKFHETPFYEAFK-KGGLFFIDEIDASIPEA------------LIIINSAIANKFFDFADERVTAHEDFRVISA 227 (383)
T ss_pred ccccccccccchHHHHHhh-cCCEEEEeCcCcCCHHH------------HHHHHHHhccCeEEecCcEEecCCCEEEEEe
Confidence 10 00011 112333333 35699999999875432 1233444421 111 123467899999
Q ss_pred cCCC-----------CCCChhhhCCCCcceEEEecCCCH
Q 006534 478 TNRS-----------DVLDPALRRPGRFDRVVMVETPDK 505 (641)
Q Consensus 478 TN~p-----------d~LDpALlRpgRFd~~I~v~~Pd~ 505 (641)
+|.+ ..|+++++. ||- .|+++.|+.
T Consensus 228 sN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~~ 263 (383)
T PHA02244 228 GNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDEK 263 (383)
T ss_pred eCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCcH
Confidence 9973 578999999 995 799999984
No 177
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.22 E-value=9.4e-12 Score=124.33 Aligned_cols=142 Identities=27% Similarity=0.401 Sum_probs=72.7
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc--------------------
Q 006534 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------------------- 389 (641)
Q Consensus 330 tf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el-------------------- 389 (641)
.|+||+|++++|..|.-.+. | +.++||+||||||||++|+++..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 48999999999999887764 2 3579999999999999999999843
Q ss_pred --------CCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHh
Q 006534 390 --------EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (641)
Q Consensus 390 --------g~pfi~vs~se~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~ 461 (641)
..||.....+.-....+|.+....-..+..|..+ |||+||+-.+. ..+++.|.+
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~G---VLflDE~~ef~---------------~~vld~Lr~ 128 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRG---VLFLDELNEFD---------------RSVLDALRQ 128 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTS---EEEECETTTS----------------HHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCC---EEEechhhhcC---------------HHHHHHHHH
Confidence 1345544443333334444332222334444444 99999997663 356677777
Q ss_pred hhcCC-----------CCCCcEEEEEecCCC-----------------------CCCChhhhCCCCcceEEEecCCCH
Q 006534 462 EMDGF-----------DSNSAVIVLGATNRS-----------------------DVLDPALRRPGRFDRVVMVETPDK 505 (641)
Q Consensus 462 emdg~-----------~~~~~ViVIaATN~p-----------------------d~LDpALlRpgRFd~~I~v~~Pd~ 505 (641)
-|+.. .-..++++|+|+|.- ..|...++. |||..+.++..+.
T Consensus 129 ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~ 204 (206)
T PF01078_consen 129 PLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSY 204 (206)
T ss_dssp HHHHSBEEEEETTEEEEEB--EEEEEEE-S------------------------------------------------
T ss_pred HHHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence 66532 113468999999851 244555555 6776666665543
No 178
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.22 E-value=1.3e-10 Score=135.85 Aligned_cols=195 Identities=22% Similarity=0.311 Sum_probs=125.7
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHH-
Q 006534 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL- 404 (641)
Q Consensus 329 vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~- 404 (641)
.+|++++|.+.+.+.+.+.+..+.. ...+|||+|++|||||++|+++.... +.||+.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~ 442 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQ----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 442 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhH
Confidence 5788999999999988887776432 23579999999999999999998754 679999999765321
Q ss_pred ----Hhhcc-------hHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC-------
Q 006534 405 ----YVGMG-------ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF------- 466 (641)
Q Consensus 405 ----~vG~~-------~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~------- 466 (641)
..|.. .......|+.|. ..+|||||||.+....+ ..|+..++.-
T Consensus 443 ~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L~~~~Q---------------~~L~~~l~~~~~~~~g~ 504 (686)
T PRK15429 443 LESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDMPLELQ---------------PKLLRVLQEQEFERLGS 504 (686)
T ss_pred hhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhCCHHHH---------------HHHHHHHHhCCEEeCCC
Confidence 12210 011223454443 35999999999865433 3333333221
Q ss_pred --CCCCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHh----cCCCC---CCCC
Q 006534 467 --DSNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVS----KKELP---LAKD 526 (641)
Q Consensus 467 --~~~~~ViVIaATN~p-------d~LDpALlRpgRFd~~I~v~~Pd~~eR~~----IL~~~l~----~~~l~---l~~d 526 (641)
....++.+|++|+.. ..+.+.|.. |+. .+.+..|+..+|.+ +++.++. +.+.+ ++++
T Consensus 505 ~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~ 581 (686)
T PRK15429 505 NKIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAE 581 (686)
T ss_pred CCcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 112468899999875 122233332 332 56788888888864 3333332 22222 3333
Q ss_pred CCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 006534 527 IDLGDIASMTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 527 vdl~~LA~~t~GfSgaDL~~Lv~eAa~~A 555 (641)
.+..|..+.+--+.++|++++++|+..+
T Consensus 582 -al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 582 -TLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred -HHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 3566666666567899999999999865
No 179
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.22 E-value=1.6e-10 Score=129.67 Aligned_cols=210 Identities=24% Similarity=0.299 Sum_probs=131.2
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC------------------
Q 006534 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE------------------ 390 (641)
Q Consensus 329 vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg------------------ 390 (641)
..|.++.|+..+++.+.-. ......++|+||||+|||+|++.+++.+.
T Consensus 188 ~d~~~v~Gq~~~~~al~la--------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT--------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhhee--------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 4788999998777654322 22345799999999999999999997531
Q ss_pred ----------CCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHH
Q 006534 391 ----------VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (641)
Q Consensus 391 ----------~pfi~vs~se~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL 460 (641)
.||...+.+--....+|.+...-...+..|..+ +|||||++.+.. .++..|+
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~~~---------------~~~~~L~ 315 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEFER---------------RTLDALR 315 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhCCH---------------HHHHHHH
Confidence 122222111111123343332223456666555 999999987643 2334455
Q ss_pred hhhcCCC-----------CCCcEEEEEecCCCC---------------------CCChhhhCCCCcceEEEecCCCHHH-
Q 006534 461 TEMDGFD-----------SNSAVIVLGATNRSD---------------------VLDPALRRPGRFDRVVMVETPDKIG- 507 (641)
Q Consensus 461 ~emdg~~-----------~~~~ViVIaATN~pd---------------------~LDpALlRpgRFd~~I~v~~Pd~~e- 507 (641)
+.|+.-. ...++.+|+|+|... .|+.+++. |||.++.++.|+.++
T Consensus 316 ~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l 393 (506)
T PRK09862 316 EPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGIL 393 (506)
T ss_pred HHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHH
Confidence 4443211 235789999999752 47778888 999999999885321
Q ss_pred ---------HHHHHHHH-------HhcCCCCCCCCCC--------------HH--HHHHhCCCCCHHHHHHHHHHHHHHH
Q 006534 508 ---------REAILKVH-------VSKKELPLAKDID--------------LG--DIASMTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 508 ---------R~~IL~~~-------l~~~~l~l~~dvd--------------l~--~LA~~t~GfSgaDL~~Lv~eAa~~A 555 (641)
..++-+.. ..+.+ .+...+. .. .-+....|+|.+....+++-|..+|
T Consensus 394 ~~~~~~~ess~~i~~rV~~ar~~q~~r~~-~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiA 472 (506)
T PRK09862 394 SKTVVPGESSATVKQRVMAARERQFKRQN-KLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIA 472 (506)
T ss_pred hcccCCCCChHHHHHHHhhHHHHHHHHHH-HHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 11121110 00000 0011111 01 1122445789999999999999999
Q ss_pred HhcCCccccHHHHHHHHH
Q 006534 556 GRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 556 ~r~~~~~It~~d~~~Al~ 573 (641)
..++++.|+.+|+.+|+.
T Consensus 473 DL~g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 473 DIDQSDIITRQHLQEAVS 490 (506)
T ss_pred HHcCCCCCCHHHHHHHHH
Confidence 999999999999999986
No 180
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.1e-10 Score=135.38 Aligned_cols=161 Identities=29% Similarity=0.430 Sum_probs=118.2
Q ss_pred ccccCChHHHHHHHHHHHH----hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC---CCeEEeehhhHHHH
Q 006534 332 ADVAGVDEAKEELEEIVEF----LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVEL 404 (641)
Q Consensus 332 ~DV~G~~e~K~~L~eiv~~----L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg---~pfi~vs~se~v~~ 404 (641)
..|+|++++.+.+.+.+.. +.+| .+|-..+||.||+|+|||.||+++|..+. ..++.+++|+|.+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp-------~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDP-------NRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCC-------CCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 3599999999999888866 3333 22334677899999999999999999986 89999999999884
Q ss_pred ------------HhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCC---C
Q 006534 405 ------------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS---N 469 (641)
Q Consensus 405 ------------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~---~ 469 (641)
|+|..+. ..+-+..+....|||++|||+.-.+ .++|-||+.||.-.- .
T Consensus 564 HsVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKAHp---------------dV~nilLQVlDdGrLTD~~ 626 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKAHP---------------DVFNLLLQVLDDGRLTDGQ 626 (786)
T ss_pred HHHHHHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhcCH---------------HHHHHHHHHhcCCeeecCC
Confidence 4444331 2344455566678999999987542 467888888875321 1
Q ss_pred ------CcEEEEEecCCC----------------------------CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHH
Q 006534 470 ------SAVIVLGATNRS----------------------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVH 515 (641)
Q Consensus 470 ------~~ViVIaATN~p----------------------------d~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~ 515 (641)
.+.++|+|||-- ..+.|+++. |+|.+|.|.+.+.+...+|+...
T Consensus 627 Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~ 704 (786)
T COG0542 627 GRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQ 704 (786)
T ss_pred CCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHH
Confidence 257899999842 122455565 88988999888888888888777
Q ss_pred Hhc
Q 006534 516 VSK 518 (641)
Q Consensus 516 l~~ 518 (641)
+.+
T Consensus 705 L~~ 707 (786)
T COG0542 705 LNR 707 (786)
T ss_pred HHH
Confidence 653
No 181
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.20 E-value=1.9e-10 Score=122.00 Aligned_cols=170 Identities=16% Similarity=0.307 Sum_probs=115.8
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC--------eEEeehhh
Q 006534 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--------FISCSASE 400 (641)
Q Consensus 329 vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p--------fi~vs~se 400 (641)
.+|+||+|++.+++.|...+. ..+.|..+||+||+|+|||++|+++|+.+.+. ++.+...+
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~-----------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSII-----------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred CChhhccCcHHHHHHHHHHHH-----------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 369999999999999888774 24567789999999999999999999976332 22222100
Q ss_pred HHHHHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEE
Q 006534 401 FVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (641)
Q Consensus 401 ~v~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIa 476 (641)
. ...+...++++.+.+.. ....|++|||+|.+... ..|.||..++. +..++++|.
T Consensus 70 --~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~---------------a~naLLK~LEe--pp~~t~~il 128 (313)
T PRK05564 70 --K--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ---------------AQNAFLKTIEE--PPKGVFIIL 128 (313)
T ss_pred --C--CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHH---------------HHHHHHHHhcC--CCCCeEEEE
Confidence 0 11233467777665432 23449999999988532 34788888884 344556665
Q ss_pred ecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCC
Q 006534 477 ATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (641)
Q Consensus 477 ATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~G 538 (641)
+|+.++.+.+.+++ |- ..+.+.+|+.++....+...+. .+.++ .+..++..+.|
T Consensus 129 ~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~----~~~~~-~~~~l~~~~~g 182 (313)
T PRK05564 129 LCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYN----DIKEE-EKKSAIAFSDG 182 (313)
T ss_pred EeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhc----CCCHH-HHHHHHHHcCC
Confidence 66778999999988 43 4889999999988887776542 12222 24556666655
No 182
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.9e-11 Score=132.41 Aligned_cols=212 Identities=24% Similarity=0.297 Sum_probs=130.8
Q ss_pred ccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC-----------------
Q 006534 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE----------------- 390 (641)
Q Consensus 328 ~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg----------------- 390 (641)
...|.||+|++.+|+.|.....- .+++|++||||||||+||+.+.+-+-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG--------------gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG--------------GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc--------------CCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 45899999999999999887753 34699999999999999999877431
Q ss_pred ------------CCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHH
Q 006534 391 ------------VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (641)
Q Consensus 391 ------------~pfi~vs~se~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Lnq 458 (641)
.||..-..+.-....+|.+..---.-...|.. .|||+||+-.+- .++|+.
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~---GVLFLDElpef~---------------~~iLe~ 302 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHN---GVLFLDELPEFK---------------RSILEA 302 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecC---CEEEeeccchhh---------------HHHHHH
Confidence 12222111111122222221111111222222 399999985542 467788
Q ss_pred HHhhhcCCC-----------CCCcEEEEEecCCC-----------------------CCCChhhhCCCCcceEEEecCCC
Q 006534 459 LLTEMDGFD-----------SNSAVIVLGATNRS-----------------------DVLDPALRRPGRFDRVVMVETPD 504 (641)
Q Consensus 459 LL~emdg~~-----------~~~~ViVIaATN~p-----------------------d~LDpALlRpgRFd~~I~v~~Pd 504 (641)
|-+-|+.-. -...+.+|+|+|.. ..|...+++ |||..++++.++
T Consensus 303 LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~ 380 (490)
T COG0606 303 LREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLS 380 (490)
T ss_pred HhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCC
Confidence 877776421 12367889999852 245566676 999999999876
Q ss_pred HHHHH--------------HHHHHH----HhcCCC---------------CCC-CCCCHHHHHHhCCCCCHHHHHHHHHH
Q 006534 505 KIGRE--------------AILKVH----VSKKEL---------------PLA-KDIDLGDIASMTTGFTGADLANLVNE 550 (641)
Q Consensus 505 ~~eR~--------------~IL~~~----l~~~~l---------------~l~-~dvdl~~LA~~t~GfSgaDL~~Lv~e 550 (641)
..++. .+++.+ .+...+ .+. .+.++...+-..-++|.+....+++-
T Consensus 381 ~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKv 460 (490)
T COG0606 381 AGELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKV 460 (490)
T ss_pred HHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 43331 111111 111111 111 11122233445557888888889888
Q ss_pred HHHHHHhcCCccccHHHHHHHHH
Q 006534 551 AALLAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 551 Aa~~A~r~~~~~It~~d~~~Al~ 573 (641)
|..+|..++...|...|+.+|+.
T Consensus 461 arTiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 461 ARTIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred HhhhhcccCcchhhHHHHHHHHh
Confidence 98888888888888888888875
No 183
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.16 E-value=2e-10 Score=131.81 Aligned_cols=189 Identities=20% Similarity=0.243 Sum_probs=126.3
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcC--CCeEEeehhhHHHHHhhcchHHHHH------------HHHHHHhcCCceEEEc
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMGASRVRD------------LFARAKKEAPSIIFID 431 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~elg--~pfi~vs~se~v~~~vG~~~~~vr~------------lF~~A~~~aP~ILfID 431 (641)
.+|||.|+||||||++|++++..++ .||+.+......+...|.- .+.. ++.+| ...+||||
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A---~~GvL~lD 91 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEA---PRGVLYVD 91 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeC---CCCcEecc
Confidence 4799999999999999999999874 4788887533333333321 1111 11112 12499999
Q ss_pred chhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC-----------CCCcEEEEEecCCCC---CCChhhhCCCCcceE
Q 006534 432 EIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSAVIVLGATNRSD---VLDPALRRPGRFDRV 497 (641)
Q Consensus 432 EIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~-----------~~~~ViVIaATN~pd---~LDpALlRpgRFd~~ 497 (641)
||+.+.... .+.|+..|+.-. ....+.|||++|..+ .|+++|+. ||+.+
T Consensus 92 Ei~rl~~~~---------------q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~ 154 (589)
T TIGR02031 92 MANLLDDGL---------------SNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALH 154 (589)
T ss_pred chhhCCHHH---------------HHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCe
Confidence 999986443 345555554221 124689999999865 79999999 99988
Q ss_pred EEec-CCCHHHHHHHHHHHHhc-----------------------CCCCCCCCCCHHHHHHh--CCCCC-HHHHHHHHHH
Q 006534 498 VMVE-TPDKIGREAILKVHVSK-----------------------KELPLAKDIDLGDIASM--TTGFT-GADLANLVNE 550 (641)
Q Consensus 498 I~v~-~Pd~~eR~~IL~~~l~~-----------------------~~l~l~~dvdl~~LA~~--t~GfS-gaDL~~Lv~e 550 (641)
+.+. .|+.++|.+|++..+.. ..+.+.+++ +..|+.. ..|.+ .+-...+++-
T Consensus 155 v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~-~~~l~~~~~~~gv~s~Ra~i~~~r~ 233 (589)
T TIGR02031 155 VSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQ-VKELVLTAASLGISGHRADLFAVRA 233 (589)
T ss_pred eecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHH-HHHHHHHHHHcCCCCccHHHHHHHH
Confidence 8776 46778889988775421 112222221 2233222 22443 4566677888
Q ss_pred HHHHHHhcCCccccHHHHHHHHHHHhc
Q 006534 551 AALLAGRLNKVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 551 Aa~~A~r~~~~~It~~d~~~Al~rvi~ 577 (641)
|...|..+++..|+.+|+..|+.-++.
T Consensus 234 ArA~Aal~gr~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 234 AKAHAALHGRTEVTEEDLKLAVELVLL 260 (589)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhh
Confidence 888999999999999999999987764
No 184
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=7.3e-10 Score=118.06 Aligned_cols=184 Identities=15% Similarity=0.235 Sum_probs=124.5
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----------------
Q 006534 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------------- 392 (641)
Q Consensus 330 tf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p----------------- 392 (641)
.|++|+|++++++.|.+.+.. .+.|..+||+||+|+||+++|+++|..+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 589999999999999998863 3556789999999999999999999875321
Q ss_pred -eEEeehh-----h-HHHH---Hhh--------cchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchh
Q 006534 393 -FISCSAS-----E-FVEL---YVG--------MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSND 450 (641)
Q Consensus 393 -fi~vs~s-----e-~v~~---~vG--------~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~ 450 (641)
++.+... . .... ..| -....+|++.+.+.. ....|++||++|.+..
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~------------ 138 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE------------ 138 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH------------
Confidence 1111110 0 0000 000 112356666555432 3345999999999853
Q ss_pred HHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHH
Q 006534 451 EREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLG 530 (641)
Q Consensus 451 e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~ 530 (641)
...|.||..|+... + .++|..|+.++.|-|.+++ |. ..+.|++|+.++..++|........ .+.+..
T Consensus 139 ---~aaNaLLK~LEEPp-~--~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~----~~~~~~ 205 (314)
T PRK07399 139 ---AAANALLKTLEEPG-N--GTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI----LNINFP 205 (314)
T ss_pred ---HHHHHHHHHHhCCC-C--CeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc----chhHHH
Confidence 23488899888654 2 3556667788999999998 54 4899999999999998887643211 112346
Q ss_pred HHHHhCCCCCHHHHHHHHHH
Q 006534 531 DIASMTTGFTGADLANLVNE 550 (641)
Q Consensus 531 ~LA~~t~GfSgaDL~~Lv~e 550 (641)
.++....| +++.+.++++.
T Consensus 206 ~l~~~a~G-s~~~al~~l~~ 224 (314)
T PRK07399 206 ELLALAQG-SPGAAIANIEQ 224 (314)
T ss_pred HHHHHcCC-CHHHHHHHHHH
Confidence 77777776 77776666654
No 185
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.14 E-value=4.9e-10 Score=128.83 Aligned_cols=259 Identities=12% Similarity=0.127 Sum_probs=141.6
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEE-eehh--
Q 006534 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-CSAS-- 399 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~-vs~s-- 399 (641)
.+...+.+++||+|+++..++|+.++..... +..+.+.++|+||||||||++++.+|++++..++. .+..
T Consensus 75 ~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~ 147 (637)
T TIGR00602 75 VEKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLP 147 (637)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhh
Confidence 4555678999999999999988877765322 22334559999999999999999999998765533 1110
Q ss_pred -hHH----------HH--HhhcchHHHHHHHHHHHh----------cCCceEEEcchhhhhhhcCCcccccchhHHHHHH
Q 006534 400 -EFV----------EL--YVGMGASRVRDLFARAKK----------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (641)
Q Consensus 400 -e~v----------~~--~vG~~~~~vr~lF~~A~~----------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (641)
... .. ........+++++..+.. ....|||||||+.+... + ...+
T Consensus 148 ~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~-----------~~~l 215 (637)
T TIGR00602 148 DFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D-----------TRAL 215 (637)
T ss_pred cccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h-----------HHHH
Confidence 000 00 001223445555555542 23559999999987532 1 1133
Q ss_pred HHHHh-hhcCCCCCCcEEEEEecCCC-------------CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC
Q 006534 457 NQLLT-EMDGFDSNSAVIVLGATNRS-------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELP 522 (641)
Q Consensus 457 nqLL~-emdg~~~~~~ViVIaATN~p-------------d~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~ 522 (641)
..+|. .... .....+|+|.+-+.. ..|.++++...|. .+|.|.+.......+.|+..+......
T Consensus 216 q~lLr~~~~e-~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~ 293 (637)
T TIGR00602 216 HEILRWKYVS-IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKK 293 (637)
T ss_pred HHHHHHHhhc-CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhc
Confidence 34444 2111 122233333332211 1134677743344 378999999999888888777654322
Q ss_pred CCCC------CCHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-------cCCccccHHHHHHHHHHHhcc--hhhh-hccC
Q 006534 523 LAKD------IDLGDIASMTTGFTGADLANLVNEAALLAGR-------LNKVVVEKIDFIHAVERSIAG--IEKK-TAKL 586 (641)
Q Consensus 523 l~~d------vdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r-------~~~~~It~~d~~~Al~rvi~g--~~~~-~~~l 586 (641)
...+ -.+..|+.. +.+|++.+++.....+.+ .+...++..+...+..+.... .++. ...+
T Consensus 294 ~~~~~~~p~~~~l~~I~~~----s~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~~~~t~~e~~~l~~~ 369 (637)
T TIGR00602 294 NGEKIKVPKKTSVELLCQG----CSGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKGKHSSNNENQEIQAL 369 (637)
T ss_pred cccccccCCHHHHHHHHHh----CCChHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccCCCCCchhHHHHHhh
Confidence 2221 135556654 445888777766554432 223345554444443322110 0000 0112
Q ss_pred ChhHHHHHHHHHHHHHHHHh
Q 006534 587 KGSEKAVVARHEAGHAVVGT 606 (641)
Q Consensus 587 s~~ek~~va~hEaghAlv~~ 606 (641)
...+..+..+|-.|..|-.+
T Consensus 370 ~~rd~sl~lfhalgkily~K 389 (637)
T TIGR00602 370 GGKDVSLFLFRALGKILYCK 389 (637)
T ss_pred ccccchhHHHHHhChhhccc
Confidence 23344456667666666543
No 186
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.14 E-value=4.7e-10 Score=110.07 Aligned_cols=144 Identities=18% Similarity=0.267 Sum_probs=97.8
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCCC------------------------eEEeehhhHHHHHhhcchHHHHHHHH
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------------------FISCSASEFVELYVGMGASRVRDLFA 418 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~elg~p------------------------fi~vs~se~v~~~vG~~~~~vr~lF~ 418 (641)
+.|..+||+||+|+|||++|++++.++... +..+.... ...+...++++.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~-----~~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG-----QSIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc-----CcCCHHHHHHHHH
Confidence 567789999999999999999999986432 11111100 0123356666666
Q ss_pred HHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCc
Q 006534 419 RAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRF 494 (641)
Q Consensus 419 ~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRF 494 (641)
.+.. ....||+|||+|.+... ..+.|+..|+... ...++|.+|+.++.+.+++.+ |.
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~~---------------~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~i~s--r~ 147 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNEA---------------AANALLKTLEEPP--PNTLFILITPSPEKLLPTIRS--RC 147 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCHH---------------HHHHHHHHhcCCC--CCeEEEEEECChHhChHHHHh--hc
Confidence 6643 23459999999998532 2366788887533 345555566677899999988 65
Q ss_pred ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCC
Q 006534 495 DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (641)
Q Consensus 495 d~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~G 538 (641)
..+.+.+|+.++..++++.. + ++++ .+..++..+.|
T Consensus 148 -~~~~~~~~~~~~~~~~l~~~----g--i~~~-~~~~i~~~~~g 183 (188)
T TIGR00678 148 -QVLPFPPLSEEALLQWLIRQ----G--ISEE-AAELLLALAGG 183 (188)
T ss_pred -EEeeCCCCCHHHHHHHHHHc----C--CCHH-HHHHHHHHcCC
Confidence 48999999999988888776 2 3333 36666666655
No 187
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.12 E-value=2.5e-09 Score=121.42 Aligned_cols=206 Identities=22% Similarity=0.330 Sum_probs=132.4
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHh----hh-------------------CCCCCCeeEEEcCCCCcHHH
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYI----RL-------------------GARPPRGVLLVGLPGTGKTL 380 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~----~l-------------------g~~~pkgVLL~GPPGTGKT~ 380 (641)
++..+-.|.|+.|.+.+-..+...+... +|..|. ++ +.+..+-+||+||||-|||+
T Consensus 263 dky~Pk~FtdLLsDe~tNR~~L~WLK~W-D~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTT 341 (877)
T KOG1969|consen 263 DKYRPKKFTDLLSDEKTNRRMLGWLKQW-DPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTT 341 (877)
T ss_pred cccChhHHHHHhcchhHHHHHHHHHHhh-cHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhH
Confidence 4456678999999998776554433221 122222 11 22334668899999999999
Q ss_pred HHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHHHHH--------hcCCceEEEcchhhhhhhcCCcccccchhHH
Q 006534 381 LAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAK--------KEAPSIIFIDEIDAVAKSRDGRFRIVSNDER 452 (641)
Q Consensus 381 LAkAIA~elg~pfi~vs~se~v~~~vG~~~~~vr~lF~~A~--------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~ 452 (641)
||+.+|.++|..++.+++++-. ++..++..+..|- ...|.+|+|||||.-.
T Consensus 342 LAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~--------------- 400 (877)
T KOG1969|consen 342 LAHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP--------------- 400 (877)
T ss_pred HHHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc---------------
Confidence 9999999999999999998643 2333444333332 2568899999998532
Q ss_pred HHHHHHHHhhhc-------CCCCC------------CcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHH
Q 006534 453 EQTLNQLLTEMD-------GFDSN------------SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILK 513 (641)
Q Consensus 453 ~~~LnqLL~emd-------g~~~~------------~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~ 513 (641)
...++.++..+. |-... -.--|||.+|.. .-|+|+.---|...|.|.+|...-..+-|+
T Consensus 401 ~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~ 478 (877)
T KOG1969|consen 401 RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLVERLN 478 (877)
T ss_pred HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCChhHHHHHHH
Confidence 112223333222 11110 012467777753 456764322488899999999888888888
Q ss_pred HHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 006534 514 VHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (641)
Q Consensus 514 ~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~ 558 (641)
..+.+.++..+.. .+..|++.|. .|++..+|....+|.+.
T Consensus 479 ~IC~rE~mr~d~~-aL~~L~el~~----~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 479 EICHRENMRADSK-ALNALCELTQ----NDIRSCINTLQFLASNV 518 (877)
T ss_pred HHHhhhcCCCCHH-HHHHHHHHhc----chHHHHHHHHHHHHHhc
Confidence 8888877654333 2555555554 59999999988887553
No 188
>PRK04132 replication factor C small subunit; Provisional
Probab=99.12 E-value=7.2e-10 Score=130.57 Aligned_cols=170 Identities=21% Similarity=0.223 Sum_probs=127.6
Q ss_pred eEEEc--CCCCcHHHHHHHHHHhc-----CCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcC------CceEEEcchh
Q 006534 368 VLLVG--LPGTGKTLLAKAVAGEA-----EVPFISCSASEFVELYVGMGASRVRDLFARAKKEA------PSIIFIDEID 434 (641)
Q Consensus 368 VLL~G--PPGTGKT~LAkAIA~el-----g~pfi~vs~se~v~~~vG~~~~~vr~lF~~A~~~a------P~ILfIDEID 434 (641)
-+..| |++.|||++|+++|+++ +.+++.+|+++.. +...++++.+.+.... ..|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 45568 99999999999999997 5689999998742 3356777776654332 2599999999
Q ss_pred hhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHH
Q 006534 435 AVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKV 514 (641)
Q Consensus 435 aL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~ 514 (641)
.|.... .+.|+..|+... ..+.+|.+||.+..+.+++++ |. ..+.|++|+.++....|+.
T Consensus 641 ~Lt~~A---------------QnALLk~lEep~--~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 641 ALTQDA---------------QQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred cCCHHH---------------HHHHHHHhhCCC--CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHH
Confidence 996432 377888888544 467888899999999999988 64 5889999999999999998
Q ss_pred HHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHH
Q 006534 515 HVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (641)
Q Consensus 515 ~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~ 570 (641)
.+.+.++.++++ .+..++..+.| +.+...++++.++... ..|+.+++..
T Consensus 701 I~~~Egi~i~~e-~L~~Ia~~s~G-DlR~AIn~Lq~~~~~~-----~~It~~~V~~ 749 (846)
T PRK04132 701 IAENEGLELTEE-GLQAILYIAEG-DMRRAINILQAAAALD-----DKITDENVFL 749 (846)
T ss_pred HHHhcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHHhc-----CCCCHHHHHH
Confidence 888777776655 58888988887 7777777777655322 2455555443
No 189
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.11 E-value=2e-10 Score=126.87 Aligned_cols=205 Identities=19% Similarity=0.245 Sum_probs=127.2
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHh
Q 006534 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV 406 (641)
Q Consensus 330 tf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~~v 406 (641)
.+.+++|.....+.+.+.+..+. ....+++|+|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIA----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 45678898888777777665432 223569999999999999999998765 57999999987633211
Q ss_pred -----hcc-------hHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC-----C--
Q 006534 407 -----GMG-------ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----D-- 467 (641)
Q Consensus 407 -----G~~-------~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~-----~-- 467 (641)
|.. .......|..| ...+|||||||.|....+ ..|+..++.- .
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~~~q---------------~~l~~~l~~~~~~~~~~~ 268 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDLPLNLQ---------------AKLLRFLQERVIERLGGR 268 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhCCHHHH---------------HHHHHHHhhCeEEeCCCC
Confidence 100 00111123333 245999999999965433 2333333211 1
Q ss_pred --CCCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHhc----CC---CCCCCCC
Q 006534 468 --SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KE---LPLAKDI 527 (641)
Q Consensus 468 --~~~~ViVIaATN~p-------d~LDpALlRpgRFd~~I~v~~Pd~~eR~~----IL~~~l~~----~~---l~l~~dv 527 (641)
...++.+|++|+.. ..+.+.|.. |+. .+.+..|+..+|.+ +++.++.+ .+ ..+.++
T Consensus 269 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~- 344 (445)
T TIGR02915 269 EEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDD- 344 (445)
T ss_pred ceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHH-
Confidence 12367889998865 234444443 443 46777888888864 33333322 22 123333
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHH
Q 006534 528 DLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (641)
Q Consensus 528 dl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~ 569 (641)
.+..|..+.+--+.++|++++++|+..+ ....|+.+++.
T Consensus 345 a~~~L~~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l~ 383 (445)
T TIGR02915 345 ALRALEAHAWPGNVRELENKVKRAVIMA---EGNQITAEDLG 383 (445)
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHcC
Confidence 3666666665557899999999998766 34567777764
No 190
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.11 E-value=8.8e-10 Score=121.55 Aligned_cols=155 Identities=26% Similarity=0.411 Sum_probs=90.9
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCC-------CeEEee----hh
Q 006534 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISCS----AS 399 (641)
Q Consensus 331 f~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~-------pfi~vs----~s 399 (641)
++++.+.++..+.+...+ . ..++++|+||||||||++|+++|..+.. .++.++ ..
T Consensus 174 l~d~~i~e~~le~l~~~L---~-----------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRL---T-----------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHH---h-----------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 677777776655554333 2 2357999999999999999999988742 123333 23
Q ss_pred hHHHHH--hhcchH----HHHHHHHHHHh--cCCceEEEcchhhhhhhc--CCcccccchhHHHHHHHHH--Hhh--hcC
Q 006534 400 EFVELY--VGMGAS----RVRDLFARAKK--EAPSIIFIDEIDAVAKSR--DGRFRIVSNDEREQTLNQL--LTE--MDG 465 (641)
Q Consensus 400 e~v~~~--vG~~~~----~vr~lF~~A~~--~aP~ILfIDEIDaL~~~r--~~~~~~~~~~e~~~~LnqL--L~e--mdg 465 (641)
+++..+ .+.+.. .+.++...|+. ..|++||||||+.....+ +.-......+.+.+....- ..+ .+.
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~ 319 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEER 319 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeecccccccc
Confidence 444332 111211 23445566654 358999999998865332 1100000111100000000 011 123
Q ss_pred CCCCCcEEEEEecCCCC----CCChhhhCCCCcceEEEecC
Q 006534 466 FDSNSAVIVLGATNRSD----VLDPALRRPGRFDRVVMVET 502 (641)
Q Consensus 466 ~~~~~~ViVIaATN~pd----~LDpALlRpgRFd~~I~v~~ 502 (641)
+....++.||||+|..| .+|.||+| ||. .|++.+
T Consensus 320 f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 55677899999999987 89999999 996 566654
No 191
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.10 E-value=1.9e-09 Score=116.79 Aligned_cols=253 Identities=22% Similarity=0.276 Sum_probs=150.8
Q ss_pred ccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-------CCCeEEe----
Q 006534 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISC---- 396 (641)
Q Consensus 328 ~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el-------g~pfi~v---- 396 (641)
...|.-++|++..|..|--. .-+|+ -.|+||.|+.|||||+++||+|.-+ |+||-.-
T Consensus 13 ~~pf~aivGqd~lk~aL~l~---av~P~---------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLN---AVDPQ---------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhh---hcccc---------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 46788899999988766432 12332 2589999999999999999999966 3433110
Q ss_pred --ehhh-------------------HHHHHhhcchHHHH------HHHH----------HHHhcCCceEEEcchhhhhhh
Q 006534 397 --SASE-------------------FVELYVGMGASRVR------DLFA----------RAKKEAPSIIFIDEIDAVAKS 439 (641)
Q Consensus 397 --s~se-------------------~v~~~vG~~~~~vr------~lF~----------~A~~~aP~ILfIDEIDaL~~~ 439 (641)
.|.+ ++..-.|.++.++- ...+ .|+.+ -.|+||||+..|..
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL~d- 158 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLLDD- 158 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEeccccccH-
Confidence 1111 22222344444321 1111 11222 23999999988753
Q ss_pred cCCcccccchhHHHHHHHHHHhhhcC-----------CCCCCcEEEEEecCCC-CCCChhhhCCCCcceEEEecCC-CHH
Q 006534 440 RDGRFRIVSNDEREQTLNQLLTEMDG-----------FDSNSAVIVLGATNRS-DVLDPALRRPGRFDRVVMVETP-DKI 506 (641)
Q Consensus 440 r~~~~~~~~~~e~~~~LnqLL~emdg-----------~~~~~~ViVIaATN~p-d~LDpALlRpgRFd~~I~v~~P-d~~ 506 (641)
.+.+.||+.+.. +....++++|+|+|+- ..|-|.|+. ||+..|.+..| +.+
T Consensus 159 --------------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~ 222 (423)
T COG1239 159 --------------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLE 222 (423)
T ss_pred --------------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHH
Confidence 344555554432 2334579999999986 488899998 99999999876 689
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHH-HHHHHHHHHhcchhhhhcc
Q 006534 507 GREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKI-DFIHAVERSIAGIEKKTAK 585 (641)
Q Consensus 507 eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~-d~~~Al~rvi~g~~~~~~~ 585 (641)
+|.+|++..+... - +.+.+.+... +...-++ +...++++.-..|+.. ++...+.. .......
T Consensus 223 ~rv~Ii~r~~~f~---~----~Pe~f~~~~~-----~~~~~lR-~~ii~ar~~l~~V~l~~~~~~~ia~----~~~~~~v 285 (423)
T COG1239 223 ERVEIIRRRLAFE---A----VPEAFLEKYA-----DAQRALR-ARIIAARSLLSEVELDDDAETKIAE----LCARLAV 285 (423)
T ss_pred HHHHHHHHHHHhh---c----CcHHHHHHHH-----HHHHHHH-HHHHHHHhccccccCcHHHHHHHHH----HHHHhcc
Confidence 9999999887531 1 2223332221 1112222 3333444444433332 22222222 2221111
Q ss_pred CChhHHHHHHHHHHHHHHHHhHHhhcCCCCCceeeEeeeeccccchhcccccc
Q 006534 586 LKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRDSKSQCMSCVCHKA 638 (641)
Q Consensus 586 ls~~ek~~va~hEaghAlv~~~l~~~~~~~~~v~kiti~~~~~~~~~~~~~~~ 638 (641)
...+..+...+++.|+.++ .-..+|++.+.+.-.-.|+.|++
T Consensus 286 --~g~radi~~~r~a~a~aa~---------~Gr~~v~~~Di~~a~~l~l~hR~ 327 (423)
T COG1239 286 --DGHRADIVVVRAAKALAAL---------RGRTEVEEEDIREAAELALLHRR 327 (423)
T ss_pred --CCCchhhHHHHHHHHHHHh---------cCceeeehhhHHHHHhhhhhhhh
Confidence 1255667788888888875 34567888888888888888875
No 192
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.09 E-value=1.4e-10 Score=107.90 Aligned_cols=113 Identities=32% Similarity=0.385 Sum_probs=68.1
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH--HHhhcchHH------HHHHHHHHHhcCCceEEEcchhhhhh
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE--LYVGMGASR------VRDLFARAKKEAPSIIFIDEIDAVAK 438 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~--~~vG~~~~~------vr~lF~~A~~~aP~ILfIDEIDaL~~ 438 (641)
+|||+||||||||+||+.+|..++.+++.++++...+ .+.|.-.-. ....+.++.. .+++++||||+....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a~~ 79 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRAPP 79 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG--H
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccCCH
Confidence 5899999999999999999999999999988765432 111110000 0000111111 467999999987642
Q ss_pred hcCCcccccchhHHHHHHHHHHhhhcCC--------CCCC------cEEEEEecCCCC----CCChhhhCCCCc
Q 006534 439 SRDGRFRIVSNDEREQTLNQLLTEMDGF--------DSNS------AVIVLGATNRSD----VLDPALRRPGRF 494 (641)
Q Consensus 439 ~r~~~~~~~~~~e~~~~LnqLL~emdg~--------~~~~------~ViVIaATN~pd----~LDpALlRpgRF 494 (641)
. .-..++.++..-.-. .... ++.+|+|+|+.+ .++++|++ ||
T Consensus 80 ~------------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 80 E------------VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp H------------HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred H------------HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 1 122333333321100 0111 499999999988 99999999 87
No 193
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.08 E-value=2.2e-09 Score=112.86 Aligned_cols=144 Identities=24% Similarity=0.324 Sum_probs=96.2
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC----------------------
Q 006534 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------------------- 390 (641)
Q Consensus 333 DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg---------------------- 390 (641)
+++|.+++...+...+..- .+.|..+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred CcccchhHHHHHHHHHHhc----------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence 5777777777766665421 13455799999999999999999999875
Q ss_pred --CCeEEeehhhHHHHHhhcchHHHHHHHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhc
Q 006534 391 --VPFISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (641)
Q Consensus 391 --~pfi~vs~se~v~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd 464 (641)
-.++.++.++....- .....++++-+..... ..-||+|||+|.+... ..|.++..|+
T Consensus 72 ~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~---------------A~nallk~lE 134 (325)
T COG0470 72 NHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED---------------AANALLKTLE 134 (325)
T ss_pred CCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH---------------HHHHHHHHhc
Confidence 355666655432210 1234455554444322 3459999999999653 3477888887
Q ss_pred CCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHH
Q 006534 465 GFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGR 508 (641)
Q Consensus 465 g~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR 508 (641)
... .+..+|.+||.++.+-+.+.+ |- ..+.|.+|+....
T Consensus 135 ep~--~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~ 173 (325)
T COG0470 135 EPP--KNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEA 173 (325)
T ss_pred cCC--CCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHH
Confidence 444 456777788899888888887 42 3677776544333
No 194
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.05 E-value=2.6e-10 Score=110.97 Aligned_cols=131 Identities=28% Similarity=0.446 Sum_probs=82.0
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHH-----H
Q 006534 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-----Y 405 (641)
Q Consensus 334 V~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~-----~ 405 (641)
|+|.++..+++.+.+..+. ..+.+|||+|++||||+++|+++.+.. +.||+.++|+.+.+. .
T Consensus 1 liG~s~~m~~~~~~~~~~a----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 5788888888877776543 234679999999999999999999865 579999999866432 2
Q ss_pred hhcch-------HHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcC-----CCC----C
Q 006534 406 VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FDS----N 469 (641)
Q Consensus 406 vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg-----~~~----~ 469 (641)
.|... ..-..+|++|... +||||||+.|...-| ..|+..++. ... .
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~~~~Q---------------~~Ll~~l~~~~~~~~g~~~~~~ 132 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLPPELQ---------------AKLLRVLEEGKFTRLGSDKPVP 132 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS-HHHH---------------HHHHHHHHHSEEECCTSSSEEE
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhhHHHHH---------------HHHHHHHhhchhcccccccccc
Confidence 33211 1123678877666 999999999975443 333333331 111 2
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcc
Q 006534 470 SAVIVLGATNRSDVLDPALRRPGRFD 495 (641)
Q Consensus 470 ~~ViVIaATN~pd~LDpALlRpgRFd 495 (641)
.++.||++|+.+ |... ...|+|.
T Consensus 133 ~~~RiI~st~~~--l~~~-v~~g~fr 155 (168)
T PF00158_consen 133 VDVRIIASTSKD--LEEL-VEQGRFR 155 (168)
T ss_dssp --EEEEEEESS---HHHH-HHTTSS-
T ss_pred ccceEEeecCcC--HHHH-HHcCCCh
Confidence 378999999964 3333 3335663
No 195
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.04 E-value=6.6e-09 Score=107.92 Aligned_cols=100 Identities=18% Similarity=0.211 Sum_probs=80.3
Q ss_pred EEEEecCC------------CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCC
Q 006534 473 IVLGATNR------------SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (641)
Q Consensus 473 iVIaATN~------------pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfS 540 (641)
++|.|||+ |.-+|-.++. |. ..|...+++.++..+||+..+...++.+.++. ++.|......-|
T Consensus 319 iiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A-~d~Lt~i~~~ts 394 (454)
T KOG2680|consen 319 IIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDA-LDLLTKIGEATS 394 (454)
T ss_pred EEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHH-HHHHHHhhhhhh
Confidence 56667775 5677777877 54 36777788999999999999988888777663 666666666667
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHh
Q 006534 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (641)
Q Consensus 541 gaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~rvi 576 (641)
-+...+|+..|.+.|.++....++.+|+..+.+-.+
T Consensus 395 LRYai~Lit~a~~~~~krk~~~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 395 LRYAIHLITAASLVCLKRKGKVVEVDDIERVYRLFL 430 (454)
T ss_pred HHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHHHh
Confidence 888999999999999999999999999998876444
No 196
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=2e-09 Score=115.34 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=105.5
Q ss_pred ccccccC-ChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC----------------
Q 006534 330 TFADVAG-VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---------------- 392 (641)
Q Consensus 330 tf~DV~G-~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p---------------- 392 (641)
.|++|+| ++.+++.|+..+. ..+.|..+||+||+|+|||++|+++|+.+.++
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~-----------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA-----------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 5888998 8889998888875 24567789999999999999999999986332
Q ss_pred --------eEEeehhhHHHHHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHH
Q 006534 393 --------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (641)
Q Consensus 393 --------fi~vs~se~v~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL 460 (641)
+..+... . ...+...++++.+.+.. ....|++|||+|.+.. ...|.||
T Consensus 72 ~~~~~hpD~~~i~~~---~--~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~---------------~a~NaLL 131 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---G--QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA---------------SAANSLL 131 (329)
T ss_pred HhcCCCCCEEEeccc---c--ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH---------------HHHHHHH
Confidence 1111110 0 01123566776655442 2234999999999853 2347899
Q ss_pred hhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHH
Q 006534 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKV 514 (641)
Q Consensus 461 ~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~ 514 (641)
..++. +..++++|.+|+.++.|.|.+++ |. ..+++.+|+.++..++|+.
T Consensus 132 K~LEE--Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 132 KFLEE--PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHhcC--CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 98885 34556677788788899999988 53 3889999998887766653
No 197
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=8.6e-10 Score=115.33 Aligned_cols=125 Identities=35% Similarity=0.529 Sum_probs=86.1
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhhCCC--------CCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH-H
Q 006534 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGAR--------PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-L 404 (641)
Q Consensus 334 V~G~~e~K~~L~eiv~~L~~p~~~~~lg~~--------~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~-~ 404 (641)
|+|++.+|+.|.-.|- ..|.++... .-.+|||.||.|||||+||+.+|..+++||...++..+.+ .
T Consensus 63 VIGQe~AKKvLsVAVY-----NHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 63 VIGQEQAKKVLSVAVY-----NHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred eecchhhhceeeeeeh-----hHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 8899999988765442 123333221 1246999999999999999999999999999999988877 4
Q ss_pred HhhcchHHH-HHHHHHHH----hcCCceEEEcchhhhhhhcCCccc--ccchhHHHHHHHHHHhhhcCC
Q 006534 405 YVGMGASRV-RDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFR--IVSNDEREQTLNQLLTEMDGF 466 (641)
Q Consensus 405 ~vG~~~~~v-r~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~--~~~~~e~~~~LnqLL~emdg~ 466 (641)
|+|+...++ ..++..|. .....||||||||.++++..+... ..+. +.+-..||..++|.
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSG---EGVQQALLKiiEGT 203 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSG---EGVQQALLKIIEGT 203 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCc---hHHHHHHHHHHcCc
Confidence 888865554 34443331 122349999999999987654311 1111 34446677777764
No 198
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.01 E-value=2e-09 Score=119.88 Aligned_cols=208 Identities=21% Similarity=0.268 Sum_probs=130.7
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHH--
Q 006534 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-- 404 (641)
Q Consensus 330 tf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~-- 404 (641)
.+.+++|.....+.+.+.+..+. .....+|+.|++|||||++|++++... +.||+.++|..+...
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 35689999988877777665432 234569999999999999999999875 579999999876331
Q ss_pred ---Hhhcch------HH-HHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC-------
Q 006534 405 ---YVGMGA------SR-VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD------- 467 (641)
Q Consensus 405 ---~vG~~~------~~-vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~------- 467 (641)
..|... .. ....|+.| ....|||||||.|....+ ..|+..++...
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~~~~q---------------~~L~~~l~~~~~~~~~~~ 267 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMPLDVQ---------------TRLLRVLADGQFYRVGGY 267 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCCHHHH---------------HHHHHHHhcCcEEeCCCC
Confidence 111100 00 01123322 234899999999865433 23444333211
Q ss_pred --CCCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHhc----CCCC---CCCCC
Q 006534 468 --SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KELP---LAKDI 527 (641)
Q Consensus 468 --~~~~ViVIaATN~p-------d~LDpALlRpgRFd~~I~v~~Pd~~eR~~----IL~~~l~~----~~l~---l~~dv 527 (641)
...++.+|++|+.. ..+.+.|.. ||. .+.+..|+..+|.+ +++.++.+ .+.+ +.++
T Consensus 268 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~- 343 (469)
T PRK10923 268 APVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPE- 343 (469)
T ss_pred CeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHH-
Confidence 12357889998764 234555655 553 46677777666654 44444432 2221 3333
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006534 528 DLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 528 dl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (641)
.+..|..+.+--+.++|++++++|+..+ ....|+.+|+...+
T Consensus 344 a~~~L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 344 TEAALTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 3666677766667899999999998776 45578888876544
No 199
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.00 E-value=1.2e-09 Score=120.92 Aligned_cols=208 Identities=20% Similarity=0.299 Sum_probs=126.3
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHH-
Q 006534 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY- 405 (641)
Q Consensus 330 tf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~~- 405 (641)
.+.+++|.+.....+.+.+..+.. ....+|++|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIAL----------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcC----------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 455688888877766655544322 23469999999999999999998764 6899999998663321
Q ss_pred ----hhcchH-------HHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC-----CC-
Q 006534 406 ----VGMGAS-------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----DS- 468 (641)
Q Consensus 406 ----vG~~~~-------~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~-----~~- 468 (641)
.|.... .....|..|. ..+|||||||.|....+ ..|+..++.- ..
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~ld~i~~l~~~~q---------------~~L~~~l~~~~~~~~~~~ 272 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERAN---EGTLLLDEIGEMPLVLQ---------------AKLLRILQEREFERIGGH 272 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEECC---CCEEEEechhhCCHHHH---------------HHHHHHHhcCcEEeCCCC
Confidence 111000 0011233332 34999999999975432 3333333221 11
Q ss_pred ---CCcEEEEEecCCCCCCChhhhCCCCcce-------EEEecCCCHHHHHH----HHHHHHhc----CCC---CCCCCC
Q 006534 469 ---NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSK----KEL---PLAKDI 527 (641)
Q Consensus 469 ---~~~ViVIaATN~pd~LDpALlRpgRFd~-------~I~v~~Pd~~eR~~----IL~~~l~~----~~l---~l~~dv 527 (641)
..++.+|++||.. + ..+.+.|+|.. .+.+..|+..+|.+ ++..++.+ .+. .+.++
T Consensus 273 ~~~~~~~rii~~t~~~--l-~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~- 348 (457)
T PRK11361 273 QTIKVDIRIIAATNRD--L-QAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPM- 348 (457)
T ss_pred ceeeeceEEEEeCCCC--H-HHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHH-
Confidence 2357899999864 1 12223334332 56778888888754 33333322 111 23333
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006534 528 DLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 528 dl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (641)
.+..|..+..--+.++|++++++|+..+ ....|+.+|+...+
T Consensus 349 a~~~L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~~~ 390 (457)
T PRK11361 349 AMSLLTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPPQI 390 (457)
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChHhh
Confidence 2556666665557899999999988765 45578888886544
No 200
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.97 E-value=2.4e-09 Score=107.94 Aligned_cols=188 Identities=22% Similarity=0.287 Sum_probs=117.6
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-CC----CeEEee
Q 006534 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-EV----PFISCS 397 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el-g~----pfi~vs 397 (641)
.++..++.+.||+|.++..+.|+-+...-.- | +++|.||||||||+-+.++|.++ |- -+..++
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~via~~gnm-----------P-~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN 85 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERLSVIAKEGNM-----------P-NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN 85 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHHHHHHHcCCC-----------C-ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc
Confidence 3566788899999999999999888754322 2 59999999999999999999986 31 234445
Q ss_pred hhhHHHHHhhcchHHHHH---HHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCC
Q 006534 398 ASEFVELYVGMGASRVRD---LFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (641)
Q Consensus 398 ~se~v~~~vG~~~~~vr~---lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~ 470 (641)
+++- .+...+|. .|.+-+-. ...||++||.|.+.... .+ .|-+.|+-+.+..
T Consensus 86 ASde------RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gA--------QQ-------AlRRtMEiyS~tt 144 (333)
T KOG0991|consen 86 ASDE------RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGA--------QQ-------ALRRTMEIYSNTT 144 (333)
T ss_pred Cccc------cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHH--------HH-------HHHHHHHHHcccc
Confidence 4432 23344443 34433322 22399999999985322 12 2223344334333
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHH
Q 006534 471 AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (641)
Q Consensus 471 ~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~e 550 (641)
.+..++|..+.+=+.+.+ |-. .+.+...+..+...-|....+..+++..++ -++.+....+| |+++.+|.
T Consensus 145 --RFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~d-gLeaiifta~G----DMRQalNn 214 (333)
T KOG0991|consen 145 --RFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDD-GLEAIIFTAQG----DMRQALNN 214 (333)
T ss_pred --hhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcc-hHHHhhhhccc----hHHHHHHH
Confidence 455577877777777766 321 344555565655555555555566777665 46767665554 77777776
Q ss_pred HHH
Q 006534 551 AAL 553 (641)
Q Consensus 551 Aa~ 553 (641)
...
T Consensus 215 LQs 217 (333)
T KOG0991|consen 215 LQS 217 (333)
T ss_pred HHH
Confidence 543
No 201
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=7.1e-09 Score=109.26 Aligned_cols=83 Identities=30% Similarity=0.424 Sum_probs=60.9
Q ss_pred ceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC--------CCCCcEEEEEec----CCCCCCChhhhCCCC
Q 006534 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--------DSNSAVIVLGAT----NRSDVLDPALRRPGR 493 (641)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~--------~~~~~ViVIaAT----N~pd~LDpALlRpgR 493 (641)
.||||||||.++.+.+.+ +.+-.++.+-..||-.++|- -....+++||+. ..|..|=|.|. ||
T Consensus 252 GIvFIDEIDKIa~~~~~g---~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GR 326 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSG---GPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GR 326 (444)
T ss_pred CeEEEehhhHHHhcCCCC---CCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CC
Confidence 499999999998766422 12334455666677777653 234578999887 46778888886 59
Q ss_pred cceEEEecCCCHHHHHHHHH
Q 006534 494 FDRVVMVETPDKIGREAILK 513 (641)
Q Consensus 494 Fd~~I~v~~Pd~~eR~~IL~ 513 (641)
|.-.|++...+.++-..||.
T Consensus 327 fPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 327 FPIRVELDALTKEDFERILT 346 (444)
T ss_pred CceEEEcccCCHHHHHHHHc
Confidence 99999999999998887764
No 202
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.96 E-value=6.7e-09 Score=122.29 Aligned_cols=157 Identities=20% Similarity=0.221 Sum_probs=90.4
Q ss_pred cccCChHHHHHHHHHHHHhcChhH-----------HhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-------CCCeE
Q 006534 333 DVAGVDEAKEELEEIVEFLRSPDK-----------YIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFI 394 (641)
Q Consensus 333 DV~G~~e~K~~L~eiv~~L~~p~~-----------~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el-------g~pfi 394 (641)
.|.|++.+|+.+. +..+....+ |.....+...+|||+|+||||||.+|++++... |.++.
T Consensus 451 ~I~G~e~vK~ail--L~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s 528 (915)
T PTZ00111 451 SIKARNNVKIGLL--CQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSS 528 (915)
T ss_pred eEECCHHHHHHHH--HHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCc
Confidence 5888888887663 222222111 000123445589999999999999999999854 24555
Q ss_pred EeehhhHHHHHh-hcchHHH-HHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC------
Q 006534 395 SCSASEFVELYV-GMGASRV-RDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF------ 466 (641)
Q Consensus 395 ~vs~se~v~~~v-G~~~~~v-r~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~------ 466 (641)
.+.+..+..... ..++..+ ...+..|. ..+++|||+|.+....+ ..|+..|+.-
T Consensus 529 ~vgLTa~~~~~d~~tG~~~le~GaLvlAd---gGtL~IDEidkms~~~Q---------------~aLlEaMEqqtIsI~K 590 (915)
T PTZ00111 529 SVGLTASIKFNESDNGRAMIQPGAVVLAN---GGVCCIDELDKCHNESR---------------LSLYEVMEQQTVTIAK 590 (915)
T ss_pred cccccchhhhcccccCcccccCCcEEEcC---CCeEEecchhhCCHHHH---------------HHHHHHHhCCEEEEec
Confidence 555443321000 0011000 01122222 24999999999854322 3344444321
Q ss_pred -----CCCCcEEEEEecCCC-------------CCCChhhhCCCCcceEEEe-cCCCHHHHHHH
Q 006534 467 -----DSNSAVIVLGATNRS-------------DVLDPALRRPGRFDRVVMV-ETPDKIGREAI 511 (641)
Q Consensus 467 -----~~~~~ViVIaATN~p-------------d~LDpALlRpgRFd~~I~v-~~Pd~~eR~~I 511 (641)
.-+..+.||||+|+. -.|+++|++ |||..+.+ +.|+.+.-..|
T Consensus 591 aGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 591 AGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred CCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHH
Confidence 123578999999974 256899999 99977544 66775544443
No 203
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.96 E-value=1.1e-08 Score=110.32 Aligned_cols=83 Identities=22% Similarity=0.291 Sum_probs=60.8
Q ss_pred cc-cccCChHHHHHHHHHHHHhcChhHHhhhC-CCCCCeeEEEcCCCCcHHHHHHHHHHhcCC-------CeEEeeh---
Q 006534 331 FA-DVAGVDEAKEELEEIVEFLRSPDKYIRLG-ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISCSA--- 398 (641)
Q Consensus 331 f~-DV~G~~e~K~~L~eiv~~L~~p~~~~~lg-~~~pkgVLL~GPPGTGKT~LAkAIA~elg~-------pfi~vs~--- 398 (641)
|+ |++|++++++++- ++++.... | ....+.++|+||||||||+||+++|+.++. |++.+.+
T Consensus 49 F~~~~~G~~~~i~~lv---~~l~~~a~----g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~ 121 (361)
T smart00763 49 FDHDFFGMEEAIERFV---NYFKSAAQ----GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGE 121 (361)
T ss_pred cchhccCcHHHHHHHH---HHHHHHHh----cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCC
Confidence 56 8999999966554 44443321 2 234577899999999999999999999976 9999988
Q ss_pred -hhHHHHHhhcchHHHHHHHHHH
Q 006534 399 -SEFVELYVGMGASRVRDLFARA 420 (641)
Q Consensus 399 -se~v~~~vG~~~~~vr~lF~~A 420 (641)
+.+.+...+.....+|+.|.+.
T Consensus 122 ~sp~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 122 ESPMHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred CCCCccCCcccCCHHHHHHHHHH
Confidence 7666666666666666655443
No 204
>PRK15115 response regulator GlrR; Provisional
Probab=98.95 E-value=2.4e-09 Score=118.35 Aligned_cols=205 Identities=22% Similarity=0.332 Sum_probs=123.3
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHh---
Q 006534 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV--- 406 (641)
Q Consensus 333 DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~~v--- 406 (641)
.++|.......+.+.+..+. .....++|+|++|||||++|+++.... +.||+.++|..+.+...
T Consensus 135 ~lig~s~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~ 204 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA----------QSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESE 204 (444)
T ss_pred cccccCHHHHHHHHHHHhhc----------cCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHH
Confidence 46777665554444443322 223469999999999999999998865 58999999986633211
Q ss_pred --hcch-------HHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC-----CC----
Q 006534 407 --GMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----DS---- 468 (641)
Q Consensus 407 --G~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~-----~~---- 468 (641)
|... .....+|+.| ...+|||||||.|....+ ..|+..++.. ..
T Consensus 205 lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~~~q---------------~~L~~~l~~~~~~~~g~~~~~ 266 (444)
T PRK15115 205 LFGHARGAFTGAVSNREGLFQAA---EGGTLFLDEIGDMPAPLQ---------------VKLLRVLQERKVRPLGSNRDI 266 (444)
T ss_pred hcCCCcCCCCCCccCCCCcEEEC---CCCEEEEEccccCCHHHH---------------HHHHHHHhhCCEEeCCCCcee
Confidence 1100 0001122222 235999999999975543 2333333321 11
Q ss_pred CCcEEEEEecCCCCCCChhhhCCCCcc-------eEEEecCCCHHHHHH----HHHHHHhc----CCC---CCCCCCCHH
Q 006534 469 NSAVIVLGATNRSDVLDPALRRPGRFD-------RVVMVETPDKIGREA----ILKVHVSK----KEL---PLAKDIDLG 530 (641)
Q Consensus 469 ~~~ViVIaATN~pd~LDpALlRpgRFd-------~~I~v~~Pd~~eR~~----IL~~~l~~----~~l---~l~~dvdl~ 530 (641)
..++.+|++|+.. ++..+. .|+|. ..+.+..|+..+|.+ +++.++.+ .+. .++++ .+.
T Consensus 267 ~~~~rii~~~~~~--l~~~~~-~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~-a~~ 342 (444)
T PRK15115 267 DIDVRIISATHRD--LPKAMA-RGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTD-AMK 342 (444)
T ss_pred eeeEEEEEeCCCC--HHHHHH-cCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHH-HHH
Confidence 1267899999863 333332 24442 156777888888853 33444332 121 23444 366
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006534 531 DIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 531 ~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (641)
.|..+.+.-+.++|+++++.|+..+ ....|+.+++...+
T Consensus 343 ~L~~~~WpgNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 381 (444)
T PRK15115 343 RLMTASWPGNVRQLVNVIEQCVALT---SSPVISDALVEQAL 381 (444)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhC---CCCccChhhhhhhh
Confidence 7777775568899999999988765 45578888876544
No 205
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=5.9e-09 Score=111.81 Aligned_cols=154 Identities=18% Similarity=0.272 Sum_probs=104.4
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC------------------------eEEeehhhHHHHHhhcchHHHHHHH
Q 006534 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------------------FISCSASEFVELYVGMGASRVRDLF 417 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p------------------------fi~vs~se~v~~~vG~~~~~vr~lF 417 (641)
.+.|..+||+||+|+|||++|+++|+.+.+. ++.+...+- -...+...+|++.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~---~~~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA---DKTIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC---CCCCCHHHHHHHH
Confidence 4678889999999999999999999987432 111111000 0012446778777
Q ss_pred HHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCC
Q 006534 418 ARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGR 493 (641)
Q Consensus 418 ~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgR 493 (641)
+.+.. ....|++|||+|.+.. ...|.||..++. +..++++|.+|+.++.|.|.+++ |
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m~~---------------~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--R 156 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMNR---------------NAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--R 156 (328)
T ss_pred HHHhhccccCCCeEEEECChhhCCH---------------HHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--h
Confidence 66643 3345999999999853 344889999885 34567888899999999999998 6
Q ss_pred cceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHH
Q 006534 494 FDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADL 544 (641)
Q Consensus 494 Fd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL 544 (641)
.. .+.|++|+.++-.+.|...... . .+-+...++....| ++...
T Consensus 157 c~-~~~~~~~~~~~~~~~L~~~~~~----~-~~~~~~~~l~la~G-sp~~A 200 (328)
T PRK05707 157 CQ-QQACPLPSNEESLQWLQQALPE----S-DERERIELLTLAGG-SPLRA 200 (328)
T ss_pred ce-eeeCCCcCHHHHHHHHHHhccc----C-ChHHHHHHHHHcCC-CHHHH
Confidence 53 6899999999888888765311 1 11123455556665 44433
No 206
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=5.2e-09 Score=115.21 Aligned_cols=155 Identities=24% Similarity=0.398 Sum_probs=108.3
Q ss_pred HHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEe-ehhhHHHHHhhcchHHHHHHHHHHHhcCC
Q 006534 347 IVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC-SASEFVELYVGMGASRVRDLFARAKKEAP 425 (641)
Q Consensus 347 iv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~v-s~se~v~~~vG~~~~~vr~lF~~A~~~aP 425 (641)
++...+++++ .+-..+||.||||+|||.||-.+|...+.||+.+ +..+++.+.....-..++..|+.|++..-
T Consensus 526 lv~qvk~s~~------s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~l 599 (744)
T KOG0741|consen 526 LVQQVKNSER------SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPL 599 (744)
T ss_pred HHHHhhcccc------CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcc
Confidence 4444555543 4456899999999999999999999999999986 45455443333334568999999999988
Q ss_pred ceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCC-cEEEEEecCCCCCCC-hhhhCCCCcceEEEecCC
Q 006534 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS-AVIVLGATNRSDVLD-PALRRPGRFDRVVMVETP 503 (641)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~-~ViVIaATN~pd~LD-pALlRpgRFd~~I~v~~P 503 (641)
+||++|+|+.|..- ...+-.....++..|+..+....+.. +.+|++||.+.+.|. -.++. .|+-.+.+|..
T Consensus 600 siivvDdiErLiD~-----vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl 672 (744)
T KOG0741|consen 600 SIIVVDDIERLLDY-----VPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNL 672 (744)
T ss_pred eEEEEcchhhhhcc-----cccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCcc
Confidence 99999999998632 22344455667777888777665543 577888887765442 23344 78888888765
Q ss_pred CH-HHHHHHHHH
Q 006534 504 DK-IGREAILKV 514 (641)
Q Consensus 504 d~-~eR~~IL~~ 514 (641)
.. ++..+++..
T Consensus 673 ~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 673 TTGEQLLEVLEE 684 (744)
T ss_pred CchHHHHHHHHH
Confidence 43 444444443
No 207
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.93 E-value=1.6e-09 Score=105.73 Aligned_cols=110 Identities=32% Similarity=0.362 Sum_probs=73.8
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCC----CeEEeehhhHHHHHhhcchHHHHHHHHHH----HhcCCceEEEcchhhhh
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEAEV----PFISCSASEFVELYVGMGASRVRDLFARA----KKEAPSIIFIDEIDAVA 437 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~elg~----pfi~vs~se~v~~~vG~~~~~vr~lF~~A----~~~aP~ILfIDEIDaL~ 437 (641)
..+||.||+|||||.+|+++|..+.. +++.++++++.+. +.....+..++..+ ......||||||||.+.
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 46899999999999999999999996 9999999998761 11122222222211 01111299999999998
Q ss_pred hhcCCcccccchhHHHHHHHHHHhhhcCCC---------CCCcEEEEEecCCC
Q 006534 438 KSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SNSAVIVLGATNRS 481 (641)
Q Consensus 438 ~~r~~~~~~~~~~e~~~~LnqLL~emdg~~---------~~~~ViVIaATN~p 481 (641)
+... .+.+-....+.+.||..+|+-. .-.++++|+|+|--
T Consensus 82 ~~~~----~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 82 PSNS----GGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp HTTT----TCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred cccc----ccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 7522 2233444567777888776421 12478999999965
No 208
>PRK08116 hypothetical protein; Validated
Probab=98.91 E-value=8.1e-09 Score=107.75 Aligned_cols=124 Identities=20% Similarity=0.263 Sum_probs=73.9
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHhhc----chHHHHHHHHHHHhcCCceEEEcchhhh
Q 006534 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM----GASRVRDLFARAKKEAPSIIFIDEIDAV 436 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~~vG~----~~~~vr~lF~~A~~~aP~ILfIDEIDaL 436 (641)
.+.|++|+|+||||||+||.++|+++ +.+++.++.++++..+... +.....++++.. . ...+|+|||++..
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l-~-~~dlLviDDlg~e 190 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL-V-NADLLILDDLGAE 190 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh-c-CCCEEEEecccCC
Confidence 34689999999999999999999985 7899999999887754321 111222333332 2 2349999999542
Q ss_pred hhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC-CC----CChhhhCCCCc---ceEEEecCCCH
Q 006534 437 AKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS-DV----LDPALRRPGRF---DRVVMVETPDK 505 (641)
Q Consensus 437 ~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~p-d~----LDpALlRpgRF---d~~I~v~~Pd~ 505 (641)
. ..+.....+..++.. ... .+..+|.|||.+ +. ++.++.+ |+ ...|.+.-||.
T Consensus 191 ~----------~t~~~~~~l~~iin~---r~~-~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 191 R----------DTEWAREKVYNIIDS---RYR-KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred C----------CCHHHHHHHHHHHHH---HHH-CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 1 112222233333332 211 223466677765 22 4566665 53 34566666664
No 209
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.89 E-value=4.9e-09 Score=116.39 Aligned_cols=207 Identities=21% Similarity=0.273 Sum_probs=123.8
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHH--
Q 006534 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY-- 405 (641)
Q Consensus 331 f~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~~-- 405 (641)
+.+++|..+...++.+.+..+. .....+++.|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLS----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHh----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 3468888888777766665432 223469999999999999999998764 6799999997663321
Q ss_pred ---hhcchH-------HHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC-----C---
Q 006534 406 ---VGMGAS-------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----D--- 467 (641)
Q Consensus 406 ---vG~~~~-------~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~-----~--- 467 (641)
.|.... .....|.. ...++|||||||.|....+ ..|+..++.. .
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~ei~~l~~~~q---------------~~ll~~l~~~~~~~~~~~~ 264 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQ---ADGGTLFLDEIGDMPLDAQ---------------TRLLRVLADGEFYRVGGRT 264 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEE---CCCCeEEEEchhhCCHHHH---------------HHHHHHHhcCcEEECCCCc
Confidence 111000 00111222 2356899999999865432 2333333211 1
Q ss_pred -CCCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHH----HHHHHHHhc----CCC---CCCCCCC
Q 006534 468 -SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGRE----AILKVHVSK----KEL---PLAKDID 528 (641)
Q Consensus 468 -~~~~ViVIaATN~p-------d~LDpALlRpgRFd~~I~v~~Pd~~eR~----~IL~~~l~~----~~l---~l~~dvd 528 (641)
...++.+|++|+.. ..+.+.|.. |+. .+.+..|+..+|. .+++.++.+ .+. .++++ .
T Consensus 265 ~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a 340 (463)
T TIGR01818 265 PIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPE-A 340 (463)
T ss_pred eeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHH-H
Confidence 12357888898764 133344443 443 3456666655554 344444332 221 23333 2
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006534 529 LGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 529 l~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (641)
+..|..+..--+.++|+++++.|+..+ ....|+.+|+...+
T Consensus 341 ~~~L~~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 341 LERLKQLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 555666554446699999999998776 34578888887655
No 210
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.88 E-value=4.1e-08 Score=111.54 Aligned_cols=222 Identities=18% Similarity=0.271 Sum_probs=143.2
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc----------CCCeEEeehhhHH
Q 006534 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSASEFV 402 (641)
Q Consensus 333 DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el----------g~pfi~vs~se~v 402 (641)
.|.+.+....++..+++..-..+ .....+++.|-||||||.+++.+-.++ ..+|+.+++-.+.
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~-------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~ 469 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQ-------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLA 469 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCC-------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeec
Confidence 35666666666666665533221 122368999999999999999998854 3677888876654
Q ss_pred HH---Hh-------hc------chHHHHHHHHHH-HhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcC
Q 006534 403 EL---YV-------GM------GASRVRDLFARA-KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 465 (641)
Q Consensus 403 ~~---~v-------G~------~~~~vr~lF~~A-~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg 465 (641)
++ |. |. +...+..-|... ....+|||+|||+|.|....| .++..|+..-.
T Consensus 470 ~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q------------dVlYn~fdWpt- 536 (767)
T KOG1514|consen 470 SPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ------------DVLYNIFDWPT- 536 (767)
T ss_pred CHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH------------HHHHHHhcCCc-
Confidence 42 21 11 122223333311 134578999999999986553 34555554432
Q ss_pred CCCCCcEEEEEecCCCCCCChhhhC---CCCcc-eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCH
Q 006534 466 FDSNSAVIVLGATNRSDVLDPALRR---PGRFD-RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (641)
Q Consensus 466 ~~~~~~ViVIaATN~pd~LDpALlR---pgRFd-~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSg 541 (641)
..+.+++||+..|..+ |++.++- ..|.+ ..+.|.+++..+.++|+...+.... .+..+ ..+-+|+.-...||
T Consensus 537 -~~~sKLvvi~IaNTmd-lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~-~f~~~-aielvarkVAavSG 612 (767)
T KOG1514|consen 537 -LKNSKLVVIAIANTMD-LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLD-AFENK-AIELVARKVAAVSG 612 (767)
T ss_pred -CCCCceEEEEeccccc-CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchh-hcchh-HHHHHHHHHHhccc
Confidence 3456788888888764 3444432 12443 4688999999999999999885431 22222 24444554444444
Q ss_pred --HHHHHHHHHHHHHHHhcCC-------ccccHHHHHHHHHHHhcc
Q 006534 542 --ADLANLVNEAALLAGRLNK-------VVVEKIDFIHAVERSIAG 578 (641)
Q Consensus 542 --aDL~~Lv~eAa~~A~r~~~-------~~It~~d~~~Al~rvi~g 578 (641)
+....+|++|...|..+.. ..|+..|+.+|+......
T Consensus 613 DaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~ 658 (767)
T KOG1514|consen 613 DARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLAS 658 (767)
T ss_pred cHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhh
Confidence 6777899999999977654 568999999999987654
No 211
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.88 E-value=1e-08 Score=118.34 Aligned_cols=101 Identities=20% Similarity=0.276 Sum_probs=65.6
Q ss_pred cEEEEEecCCC--CCCChhhhCCCCcc---eEEEecC--C-CHHHHHHHHHHHHhcC----CC-CCCCCCCHHHHHH---
Q 006534 471 AVIVLGATNRS--DVLDPALRRPGRFD---RVVMVET--P-DKIGREAILKVHVSKK----EL-PLAKDIDLGDIAS--- 534 (641)
Q Consensus 471 ~ViVIaATN~p--d~LDpALlRpgRFd---~~I~v~~--P-d~~eR~~IL~~~l~~~----~l-~l~~dvdl~~LA~--- 534 (641)
.+.||+++|+. ..+||+|.. ||. ..+.++. + +.+.+..+++...+.. +. +++.+. +..|.+
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eA-Va~LI~~~~ 353 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDA-VEEIIREAK 353 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHH-HHHHHHHHH
Confidence 67899999885 567999988 775 4455542 2 2455666665444321 11 222221 223322
Q ss_pred hCCC------CCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 006534 535 MTTG------FTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (641)
Q Consensus 535 ~t~G------fSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~r 574 (641)
+..| +.-++|.+++++|...|...++..|+.+|+.+|+.+
T Consensus 354 R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 354 RRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 1122 346899999999999999999999999999988854
No 212
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.80 E-value=1.7e-09 Score=101.17 Aligned_cols=82 Identities=29% Similarity=0.477 Sum_probs=57.9
Q ss_pred cCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC---CCeEEeehhhHHHHHhhcchH
Q 006534 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVELYVGMGAS 411 (641)
Q Consensus 335 ~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg---~pfi~vs~se~v~~~vG~~~~ 411 (641)
+|...+.+++++-++.+.. ....|||+|++||||+++|++++...+ .+|+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~----------~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----------SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----------SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhC----------CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 4777777888777766533 234699999999999999999998764 477877776532
Q ss_pred HHHHHHHHHHhcCCceEEEcchhhhhhhc
Q 006534 412 RVRDLFARAKKEAPSIIFIDEIDAVAKSR 440 (641)
Q Consensus 412 ~vr~lF~~A~~~aP~ILfIDEIDaL~~~r 440 (641)
.++++.+ ...+|||+|+|.|....
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~~~~ 85 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLSPEA 85 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-HHH
T ss_pred --HHHHHHc---CCCEEEECChHHCCHHH
Confidence 3455555 45599999999996543
No 213
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.79 E-value=1.5e-08 Score=97.99 Aligned_cols=133 Identities=24% Similarity=0.362 Sum_probs=86.3
Q ss_pred CChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----------------------
Q 006534 336 GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------------------- 392 (641)
Q Consensus 336 G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p----------------------- 392 (641)
|++++++.|.+.+. ..+.|..+||+||+|+||+++|+++|..+-..
T Consensus 1 gq~~~~~~L~~~~~-----------~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIK-----------SGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHH-----------CTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHH-----------cCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 78888888888775 34567789999999999999999999976321
Q ss_pred eEEeehhhHHHHHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCC
Q 006534 393 FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS 468 (641)
Q Consensus 393 fi~vs~se~v~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~ 468 (641)
++.++..+.. ..-..+.++++.+.+.. ...-|++|||+|.+.. ...|.||..|+..
T Consensus 70 ~~~~~~~~~~---~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~---------------~a~NaLLK~LEep-- 129 (162)
T PF13177_consen 70 FIIIKPDKKK---KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE---------------EAQNALLKTLEEP-- 129 (162)
T ss_dssp EEEEETTTSS---SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H---------------HHHHHHHHHHHST--
T ss_pred eEEEeccccc---chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH---------------HHHHHHHHHhcCC--
Confidence 1222111100 01234667766665532 2345999999999853 3448899999844
Q ss_pred CCcEEEEEecCCCCCCChhhhCCCCcceEEEecC
Q 006534 469 NSAVIVLGATNRSDVLDPALRRPGRFDRVVMVET 502 (641)
Q Consensus 469 ~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~ 502 (641)
..++++|.+|+.++.|.|.+++ |. ..+.+++
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred CCCEEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 4567888888889999999998 54 2555554
No 214
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.79 E-value=1.4e-08 Score=111.89 Aligned_cols=205 Identities=22% Similarity=0.327 Sum_probs=122.8
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHh---
Q 006534 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV--- 406 (641)
Q Consensus 333 DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~~v--- 406 (641)
.++|.......+.+-+..+. .....++++|.+||||+++|+++.... +.||+.++|..+.+...
T Consensus 140 ~lig~s~~~~~~~~~i~~~~----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVA----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhcc----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 46677776665554444332 234579999999999999999998654 57999999986533211
Q ss_pred --hcchH-------HHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC---------C
Q 006534 407 --GMGAS-------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------S 468 (641)
Q Consensus 407 --G~~~~-------~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~---------~ 468 (641)
|.... ....+|..| ..++|||||||.|....+ ..|+..++.-. .
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ldei~~l~~~~q---------------~~l~~~l~~~~~~~~~~~~~~ 271 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPMMQ---------------VRLLRAIQEREVQRVGSNQTI 271 (441)
T ss_pred hcCCCCCCcCCCCcCCCCceeEC---CCCEEEEeccccCCHHHH---------------HHHHHHHccCcEEeCCCCcee
Confidence 11000 001112222 356999999999975433 23344333211 1
Q ss_pred CCcEEEEEecCCCCCCChhhhCCCCcce-------EEEecCCCHHHHHH----HHHHHHhc----CCC---CCCCCCCHH
Q 006534 469 NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSK----KEL---PLAKDIDLG 530 (641)
Q Consensus 469 ~~~ViVIaATN~pd~LDpALlRpgRFd~-------~I~v~~Pd~~eR~~----IL~~~l~~----~~l---~l~~dvdl~ 530 (641)
..++.+|++|+.+ + ..+..+|+|.. .+.+..|+..+|.+ +++.++.+ .+. .+.++ .+.
T Consensus 272 ~~~~rii~~t~~~--~-~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~ 347 (441)
T PRK10365 272 SVDVRLIAATHRD--L-AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQ-AMD 347 (441)
T ss_pred eeceEEEEeCCCC--H-HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHH-HHH
Confidence 1257788888764 1 22334455532 56777888887754 44444332 111 13333 355
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006534 531 DIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 531 ~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al 572 (641)
.|......-+.++|.++++.|+..+ ....|+.+++...+
T Consensus 348 ~L~~~~wpgN~reL~~~~~~~~~~~---~~~~i~~~~l~~~~ 386 (441)
T PRK10365 348 LLIHYDWPGNIRELENAVERAVVLL---TGEYISERELPLAI 386 (441)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHhC---CCCccchHhCchhh
Confidence 6666665457799999999988764 44578888876544
No 215
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.78 E-value=3.3e-08 Score=113.24 Aligned_cols=191 Identities=14% Similarity=0.105 Sum_probs=131.0
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcC--CCeEEeehhhHHHHHhhcc---------hH-HHHHHHHHHHhcCCceEEEcch
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMG---------AS-RVRDLFARAKKEAPSIIFIDEI 433 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~elg--~pfi~vs~se~v~~~vG~~---------~~-~vr~lF~~A~~~aP~ILfIDEI 433 (641)
.||||.|++||||++++++++.-+. .||+.+..+--....+|.. .. .-..++..|.. .|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 5899999999999999999999874 5888876655555555542 11 11223333333 39999999
Q ss_pred hhhhhhcCCcccccchhHHHHHHHHHHhhhcCC-----------CCCCcEEEEEecCCC---CCCChhhhCCCCcceEEE
Q 006534 434 DAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRS---DVLDPALRRPGRFDRVVM 499 (641)
Q Consensus 434 DaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~-----------~~~~~ViVIaATN~p---d~LDpALlRpgRFd~~I~ 499 (641)
..+. ..+++.|++-|+.- .-...+++|++.|.. ..|+++++. ||+.+|.
T Consensus 103 n~~~---------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~ 165 (584)
T PRK13406 103 ERLE---------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLD 165 (584)
T ss_pred ccCC---------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEE
Confidence 8774 34667777777642 223568888874432 468999999 9999999
Q ss_pred ecCCCHHHHH-------HHHHHHHhcCCCCCCCCCCHHHHHHh--CCCC-CHHHHHHHHHHHHHHHHhcCCccccHHHHH
Q 006534 500 VETPDKIGRE-------AILKVHVSKKELPLAKDIDLGDIASM--TTGF-TGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (641)
Q Consensus 500 v~~Pd~~eR~-------~IL~~~l~~~~l~l~~dvdl~~LA~~--t~Gf-SgaDL~~Lv~eAa~~A~r~~~~~It~~d~~ 569 (641)
++.|+..+.. +|....-.-.++.+.+++ +..++.. ..|. |.+-...+++-|..+|..+++..|+.+|+.
T Consensus 166 v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~-l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~ 244 (584)
T PRK13406 166 LDGLALRDAREIPIDADDIAAARARLPAVGPPPEA-IAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLA 244 (584)
T ss_pred cCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHH-HHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 9988765421 233322211234444432 3443322 2355 778888899999999999999999999999
Q ss_pred HHHHHHhc
Q 006534 570 HAVERSIA 577 (641)
Q Consensus 570 ~Al~rvi~ 577 (641)
+|+.-++.
T Consensus 245 ~Aa~lvL~ 252 (584)
T PRK13406 245 LAARLVLA 252 (584)
T ss_pred HHHHHHHH
Confidence 99987764
No 216
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.78 E-value=4.4e-08 Score=102.83 Aligned_cols=194 Identities=19% Similarity=0.203 Sum_probs=123.0
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006534 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v 402 (641)
.+..++-+++|++++++....+.+..+.-+ .| +.|+|||||||||....+.|..+..|.=. .+-+.
T Consensus 32 vekyrP~~l~dv~~~~ei~st~~~~~~~~~-----------lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~--~~m~l 97 (360)
T KOG0990|consen 32 VEKYRPPFLGIVIKQEPIWSTENRYSGMPG-----------LP-HLLFYGPPGTGKTSTILANARDFYSPHPT--TSMLL 97 (360)
T ss_pred ccCCCCchhhhHhcCCchhhHHHHhccCCC-----------CC-cccccCCCCCCCCCchhhhhhhhcCCCCc--hhHHH
Confidence 456677789999999999988888743222 22 79999999999999999999998765111 11122
Q ss_pred HHH----hhcchHH-HHHHHHHHHh-------cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCC
Q 006534 403 ELY----VGMGASR-VRDLFARAKK-------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (641)
Q Consensus 403 ~~~----vG~~~~~-vr~lF~~A~~-------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~ 470 (641)
++. .|-+.-+ --..|..++. ..+..|++||.|++....| |+|-+.++.+..+
T Consensus 98 elnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQ---------------nALRRviek~t~n- 161 (360)
T KOG0990|consen 98 ELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQ---------------NALRRVIEKYTAN- 161 (360)
T ss_pred HhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHH---------------HHHHHHHHHhccc-
Confidence 211 1111111 1234444442 2567999999999976554 4444555555554
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHH
Q 006534 471 AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (641)
Q Consensus 471 ~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~e 550 (641)
+.++...|.+..+.|++++ |+. .+.+.+.+...-...+..++........++ -...++. .+-+|++..+|.
T Consensus 162 -~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~-~~~a~~r----~s~gDmr~a~n~ 232 (360)
T KOG0990|consen 162 -TRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPE-GYSALGR----LSVGDMRVALNY 232 (360)
T ss_pred -eEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHH-HHHHHHH----HhHHHHHHHHHH
Confidence 4455668999999999987 654 455667777777778888876544433332 1233333 245677776666
Q ss_pred HHHHH
Q 006534 551 AALLA 555 (641)
Q Consensus 551 Aa~~A 555 (641)
....+
T Consensus 233 Lqs~~ 237 (360)
T KOG0990|consen 233 LQSIL 237 (360)
T ss_pred HHHHH
Confidence 54433
No 217
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.77 E-value=9.5e-08 Score=98.49 Aligned_cols=132 Identities=17% Similarity=0.257 Sum_probs=80.2
Q ss_pred Ccccccccc-CChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHH
Q 006534 327 DTITFADVA-GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (641)
Q Consensus 327 ~~vtf~DV~-G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v 402 (641)
...+|++.. +.++.+..+..+..+..+.. ....+++|+|+||||||+||.++|.++ +..++.++..++.
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~a~~~~~~~~-------~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~ 139 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSKARQYVEEFD-------GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM 139 (244)
T ss_pred cCCccccccCCCchHHHHHHHHHHHHHhhc-------cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH
Confidence 455777765 33344444444444443211 113489999999999999999999987 7888999999888
Q ss_pred HHHhhc---chHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006534 403 ELYVGM---GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 403 ~~~vG~---~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN 479 (641)
..+... ......++++... ..++|+|||++... ..+....++.+++..-- ... -.+|.+||
T Consensus 140 ~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~----------~s~~~~~~l~~Ii~~Ry--~~~--~~tiitSN 203 (244)
T PRK07952 140 SAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT----------ESRYEKVIINQIVDRRS--SSK--RPTGMLTN 203 (244)
T ss_pred HHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC----------CCHHHHHHHHHHHHHHH--hCC--CCEEEeCC
Confidence 754332 1112234444432 46699999997753 12233456666665421 212 24455788
Q ss_pred CC
Q 006534 480 RS 481 (641)
Q Consensus 480 ~p 481 (641)
..
T Consensus 204 l~ 205 (244)
T PRK07952 204 SN 205 (244)
T ss_pred CC
Confidence 64
No 218
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=4.1e-08 Score=105.78 Aligned_cols=134 Identities=22% Similarity=0.258 Sum_probs=95.2
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe-------------------------EEeehhhHH--------------
Q 006534 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------------------------ISCSASEFV-------------- 402 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pf-------------------------i~vs~se~v-------------- 402 (641)
.+.|.++||+||+|+||+++|+++|+.+.+.. +.+......
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 47889999999999999999999998764421 111110000
Q ss_pred --HH------H-hhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCC
Q 006534 403 --EL------Y-VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN 469 (641)
Q Consensus 403 --~~------~-vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~ 469 (641)
+. . ..-+...+|++.+.+.. ..-.|++||++|.+.. ..-|.||..++ ++.
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLE--EPp 160 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV---------------AAANALLKTLE--EPP 160 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH---------------HHHHHHHHHhc--CCC
Confidence 00 0 01133567776665432 2234999999999853 34489999998 566
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHH
Q 006534 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVH 515 (641)
Q Consensus 470 ~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~ 515 (641)
.++++|..|++++.|.|.+++ |. ..+.|++|+.++..+.|...
T Consensus 161 ~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 161 PGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 778899999999999999998 65 48999999998888887653
No 219
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=3e-07 Score=100.77 Aligned_cols=225 Identities=18% Similarity=0.211 Sum_probs=142.9
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEeehhhHHH----
Q 006534 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEFVE---- 403 (641)
Q Consensus 333 DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el-----g~pfi~vs~se~v~---- 403 (641)
.+.|.+..+..+++++..-. ....+..+++.|-||||||.+...+-... ....++++|..+.+
T Consensus 151 ~l~gRe~e~~~v~~F~~~hl--------e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ai 222 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHL--------ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAI 222 (529)
T ss_pred CccchHHHHHHHHHHHHhhh--------hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHH
Confidence 47788888887777765422 24556789999999999999998776544 22447788764321
Q ss_pred ------HH----hhcch-HHHHHHHHH-HHhcC-CceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCC
Q 006534 404 ------LY----VGMGA-SRVRDLFAR-AKKEA-PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (641)
Q Consensus 404 ------~~----vG~~~-~~vr~lF~~-A~~~a-P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~ 470 (641)
.+ .+.+. ......|.. ..... +-++++||+|.|....+. ++..|. ++..+ .+.
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~------------vLy~lF-ewp~l-p~s 288 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT------------VLYTLF-EWPKL-PNS 288 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc------------eeeeeh-hcccC-Ccc
Confidence 11 11111 122223322 22233 669999999999855432 222222 12222 356
Q ss_pred cEEEEEecCCCCCCChhhhC----CCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCH--HHH
Q 006534 471 AVIVLGATNRSDVLDPALRR----PGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG--ADL 544 (641)
Q Consensus 471 ~ViVIaATN~pd~LDpALlR----pgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSg--aDL 544 (641)
.+++|+..|..|.=|..|-| .+--...+.|++++.++..+||...+.........+..+...|+...|.|| +.+
T Consensus 289 r~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRka 368 (529)
T KOG2227|consen 289 RIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKA 368 (529)
T ss_pred eeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHH
Confidence 78999999987655554422 223346889999999999999999987643322223346667888888776 566
Q ss_pred HHHHHHHHHHHHhcCC----------------ccccHHHHHHHHHHHhcch
Q 006534 545 ANLVNEAALLAGRLNK----------------VVVEKIDFIHAVERSIAGI 579 (641)
Q Consensus 545 ~~Lv~eAa~~A~r~~~----------------~~It~~d~~~Al~rvi~g~ 579 (641)
-.+|+.|..+|..+.+ ..|..+++..++.++....
T Consensus 369 Ldv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~ 419 (529)
T KOG2227|consen 369 LDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSP 419 (529)
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccCh
Confidence 6778888888866433 2355777777777765543
No 220
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.75 E-value=4.9e-08 Score=96.70 Aligned_cols=184 Identities=27% Similarity=0.357 Sum_probs=93.7
Q ss_pred cCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCC---CeEEeeh-h-h---HHHHH-
Q 006534 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV---PFISCSA-S-E---FVELY- 405 (641)
Q Consensus 335 ~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~---pfi~vs~-s-e---~v~~~- 405 (641)
+|.++..+.|.+++.. .....++|+||+|+|||+|++.+..+..- ..+++.. . . ....+
T Consensus 2 ~gR~~el~~l~~~l~~------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLES------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 4666655555555432 12457999999999999999999998732 1111111 0 0 00000
Q ss_pred ------------h-----------------hcchHHHHHHHHHHHhcC-CceEEEcchhhhh-hhcCCcccccchhHHHH
Q 006534 406 ------------V-----------------GMGASRVRDLFARAKKEA-PSIIFIDEIDAVA-KSRDGRFRIVSNDEREQ 454 (641)
Q Consensus 406 ------------v-----------------G~~~~~vr~lF~~A~~~a-P~ILfIDEIDaL~-~~r~~~~~~~~~~e~~~ 454 (641)
. ......+..+++...... ..||+|||+|.+. .... ...
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~----------~~~ 139 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE----------DKD 139 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT----------THH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc----------hHH
Confidence 0 112344566666665433 4799999999997 2211 123
Q ss_pred HHHHHHhhhcCCCCCCcE-EEEEecCCC---C--CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCC-CCCC
Q 006534 455 TLNQLLTEMDGFDSNSAV-IVLGATNRS---D--VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPL-AKDI 527 (641)
Q Consensus 455 ~LnqLL~emdg~~~~~~V-iVIaATN~p---d--~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l-~~dv 527 (641)
.+..|...++......++ +|++++... + .-...+. +|+.. +.+++.+.++..++++..+.+. ..+ .++.
T Consensus 140 ~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~ 215 (234)
T PF01637_consen 140 FLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDE 215 (234)
T ss_dssp HHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC-------HH
T ss_pred HHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHH
Confidence 444455555543333444 444444321 1 1122232 37776 9999999999999999987654 333 2334
Q ss_pred CHHHHHHhCCCCCHHHHH
Q 006534 528 DLGDIASMTTGFTGADLA 545 (641)
Q Consensus 528 dl~~LA~~t~GfSgaDL~ 545 (641)
+++.+...+.| .|+.|.
T Consensus 216 ~~~~i~~~~gG-~P~~l~ 232 (234)
T PF01637_consen 216 DIEEIYSLTGG-NPRYLQ 232 (234)
T ss_dssp HHHHHHHHHTT--HHHHH
T ss_pred HHHHHHHHhCC-CHHHHh
Confidence 67888888877 555554
No 221
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.75 E-value=3e-09 Score=98.90 Aligned_cols=109 Identities=28% Similarity=0.414 Sum_probs=58.2
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehh-hHHH-HHhhcchHHHH-HHHHHHHhcC---CceEEEcchhhhhhhc
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS-EFVE-LYVGMGASRVR-DLFARAKKEA---PSIIFIDEIDAVAKSR 440 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~s-e~v~-~~vG~~~~~vr-~lF~~A~~~a---P~ILfIDEIDaL~~~r 440 (641)
+|||.|+||+|||++|+++|..++..|..|.+. ++.. ...|...-.-. ..|+. ... ..|+++|||....++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~--~~GPif~~ill~DEiNrappkt 78 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEF--RPGPIFTNILLADEINRAPPKT 78 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEE--EE-TT-SSEEEEETGGGS-HHH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEe--ecChhhhceeeecccccCCHHH
Confidence 589999999999999999999999999877663 3332 22232100000 00000 001 1399999998876544
Q ss_pred CCcccccchhHHHHHHHHHHhhhcC---------CCCCCcEEEEEecCCCC-----CCChhhhCCCCc
Q 006534 441 DGRFRIVSNDEREQTLNQLLTEMDG---------FDSNSAVIVLGATNRSD-----VLDPALRRPGRF 494 (641)
Q Consensus 441 ~~~~~~~~~~e~~~~LnqLL~emdg---------~~~~~~ViVIaATN~pd-----~LDpALlRpgRF 494 (641)
+ +.||+.|.. +.-...+.||||-|+.+ .|+++++. ||
T Consensus 79 Q---------------sAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 79 Q---------------SALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp H---------------HHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred H---------------HHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 3 455555542 23346799999999875 78899988 87
No 222
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=1.5e-07 Score=100.73 Aligned_cols=135 Identities=18% Similarity=0.300 Sum_probs=94.3
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe-------EEe-ehh--------hH--HHHHhh--cchHHHHHHHHHHH
Q 006534 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISC-SAS--------EF--VELYVG--MGASRVRDLFARAK 421 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pf-------i~v-s~s--------e~--v~~~vG--~~~~~vr~lF~~A~ 421 (641)
.+.|.++||+||+|+||+++|+++|+.+-+.- -.| +|. ++ +....| -+...+|++.+.+.
T Consensus 21 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~ 100 (325)
T PRK06871 21 GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVS 100 (325)
T ss_pred CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHh
Confidence 46678899999999999999999999763311 011 000 11 000011 24567787766554
Q ss_pred h----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceE
Q 006534 422 K----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRV 497 (641)
Q Consensus 422 ~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~ 497 (641)
. +.-.|++||++|.+.. ..-|.||..++. +..++++|.+|+.++.|.|.+++ |- ..
T Consensus 101 ~~~~~g~~KV~iI~~a~~m~~---------------~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~~ 160 (325)
T PRK06871 101 QHAQQGGNKVVYIQGAERLTE---------------AAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-QT 160 (325)
T ss_pred hccccCCceEEEEechhhhCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-eE
Confidence 3 2334999999999853 334889999984 55677888888889999999988 53 37
Q ss_pred EEecCCCHHHHHHHHHHHH
Q 006534 498 VMVETPDKIGREAILKVHV 516 (641)
Q Consensus 498 I~v~~Pd~~eR~~IL~~~l 516 (641)
+.+.+|+.++..+.|....
T Consensus 161 ~~~~~~~~~~~~~~L~~~~ 179 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQS 179 (325)
T ss_pred EeCCCCCHHHHHHHHHHHh
Confidence 8899999988887777653
No 223
>PRK12377 putative replication protein; Provisional
Probab=98.72 E-value=9.1e-08 Score=98.88 Aligned_cols=101 Identities=20% Similarity=0.226 Sum_probs=63.3
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHhhcc--hHHHHHHHHHHHhcCCceEEEcchhhhhhh
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMG--ASRVRDLFARAKKEAPSIIFIDEIDAVAKS 439 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~~vG~~--~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~ 439 (641)
..+++|+||||||||+||.|+|+++ +..++.++..+++......- .....++++.. ....+|+|||++....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~- 177 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRE- 177 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCC-
Confidence 3689999999999999999999987 67888888888877543210 01112333332 3456999999966421
Q ss_pred cCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC
Q 006534 440 RDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (641)
Q Consensus 440 r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~p 481 (641)
......++.+++..-. .... -+|.+||..
T Consensus 178 ---------s~~~~~~l~~ii~~R~--~~~~--ptiitSNl~ 206 (248)
T PRK12377 178 ---------TKNEQVVLNQIIDRRT--ASMR--SVGMLTNLN 206 (248)
T ss_pred ---------CHHHHHHHHHHHHHHH--hcCC--CEEEEcCCC
Confidence 1223445555555432 1112 334578864
No 224
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.69 E-value=1.3e-07 Score=100.59 Aligned_cols=198 Identities=22% Similarity=0.291 Sum_probs=126.4
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH
Q 006534 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (641)
Q Consensus 327 ~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~ 403 (641)
+...|+.+++.+...+.+.+-...+.- ....+||.|..||||-++||+..... ..||+.++|..+-+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k~Am----------lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQKLAM----------LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHHhhc----------cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 456788899888877766554433211 12349999999999999999987754 78999999986644
Q ss_pred H-----Hhhcc--hHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcC--C-------C
Q 006534 404 L-----YVGMG--ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG--F-------D 467 (641)
Q Consensus 404 ~-----~vG~~--~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg--~-------~ 467 (641)
. ..|.. ...-..+|++|... .||+|||..+.+.-+ ..||+-+.. | +
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmSp~lQ---------------aKLLRFL~DGtFRRVGee~E 330 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMSPRLQ---------------AKLLRFLNDGTFRRVGEDHE 330 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcCHHHH---------------HHHHHHhcCCceeecCCcce
Confidence 2 22222 23445788888766 899999988865543 233443321 1 1
Q ss_pred CCCcEEEEEecCCC--C-----CCChhhhCCCCcceEEEecCCCHHHHHH--------HHHHHHhcCCCCCC---CCCCH
Q 006534 468 SNSAVIVLGATNRS--D-----VLDPALRRPGRFDRVVMVETPDKIGREA--------ILKVHVSKKELPLA---KDIDL 529 (641)
Q Consensus 468 ~~~~ViVIaATN~p--d-----~LDpALlRpgRFd~~I~v~~Pd~~eR~~--------IL~~~l~~~~l~l~---~dvdl 529 (641)
-.-+|.|||||..+ + .+-..|.- |+. ++.+..|...+|.+ ++..+.++.+++.. ++ -+
T Consensus 331 v~vdVRVIcatq~nL~~lv~~g~fReDLfy--RLN-VLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~-~~ 406 (511)
T COG3283 331 VHVDVRVICATQVNLVELVQKGKFREDLFY--RLN-VLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAAD-LL 406 (511)
T ss_pred EEEEEEEEecccccHHHHHhcCchHHHHHH--Hhh-eeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHH-HH
Confidence 12368999999765 1 22222222 332 66777888877753 34455555555432 22 14
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 006534 530 GDIASMTTGFTGADLANLVNEAALLAG 556 (641)
Q Consensus 530 ~~LA~~t~GfSgaDL~~Lv~eAa~~A~ 556 (641)
..+.+.-+--+.++|.|++-+|+....
T Consensus 407 ~~L~~y~WpGNVRqL~N~iyRA~s~~E 433 (511)
T COG3283 407 TVLTRYAWPGNVRQLKNAIYRALTLLE 433 (511)
T ss_pred HHHHHcCCCccHHHHHHHHHHHHHHhc
Confidence 445555554477999999999987763
No 225
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.68 E-value=1.4e-07 Score=100.29 Aligned_cols=132 Identities=23% Similarity=0.306 Sum_probs=77.6
Q ss_pred cccccccCCh-HHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHH
Q 006534 329 ITFADVAGVD-EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL 404 (641)
Q Consensus 329 vtf~DV~G~~-e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~ 404 (641)
.+|+++...+ +....+..+.+++.+. .. ....+|++|+||+|||||+||.|+|+++ |.+...++.++|+..
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~---~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~ 198 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAY---PP--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRE 198 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHh---hc--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHH
Confidence 4666665433 2223333344444322 11 2346799999999999999999999987 788888888888765
Q ss_pred Hhhc-chHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhh-hcCCCCCCcEEEEEecCCC
Q 006534 405 YVGM-GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE-MDGFDSNSAVIVLGATNRS 481 (641)
Q Consensus 405 ~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~e-mdg~~~~~~ViVIaATN~p 481 (641)
+... ....+.+.++... ...+|+|||+.+-. .....+..++..++.. +. .+.-.|.|||.+
T Consensus 199 lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~---------~s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl~ 261 (306)
T PRK08939 199 LKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQ---------MSSWVRDEVLGVILQYRMQ-----EELPTFFTSNFD 261 (306)
T ss_pred HHHHHhcCcHHHHHHHhc--CCCEEEEecCCCcc---------ccHHHHHHHHHHHHHHHHH-----CCCeEEEECCCC
Confidence 4322 1112334444332 34599999996542 1222233455555542 22 123456688865
No 226
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=6.5e-08 Score=104.81 Aligned_cols=75 Identities=37% Similarity=0.682 Sum_probs=60.0
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH-HHhhcchH-HHHHHHHHHH----hcCCceEEEcchhhhhhh
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVGMGAS-RVRDLFARAK----KEAPSIIFIDEIDAVAKS 439 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~-~~vG~~~~-~vr~lF~~A~----~~aP~ILfIDEIDaL~~~ 439 (641)
.+|||.||.|+|||+||+.+|.-+++||..++|..+.. -|+|+... -+..++..|. +....||||||+|.+..+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 36999999999999999999999999999999998876 48887543 4455655542 223459999999999854
Q ss_pred c
Q 006534 440 R 440 (641)
Q Consensus 440 r 440 (641)
.
T Consensus 307 ~ 307 (564)
T KOG0745|consen 307 A 307 (564)
T ss_pred C
Confidence 4
No 227
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=2.4e-07 Score=99.78 Aligned_cols=133 Identities=17% Similarity=0.234 Sum_probs=92.7
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-------eEEe-ehhhHH----------HHH---hhcchHHHHHHHHHH
Q 006534 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC-SASEFV----------ELY---VGMGASRVRDLFARA 420 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p-------fi~v-s~se~v----------~~~---vG~~~~~vr~lF~~A 420 (641)
.+.|..+||+||+|+||+++|.++|+.+-+. .-.| +|..+. ... ..-+.+.+|++.+.+
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH
Confidence 5678899999999999999999999976321 1011 010000 000 012355677766655
Q ss_pred Hh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcce
Q 006534 421 KK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDR 496 (641)
Q Consensus 421 ~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~ 496 (641)
.. +.-.|++||++|.+.. +.-|.||..++. +..+.++|..|+.++.|.|.+++ |-.
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq- 160 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALLTD---------------AAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR- 160 (334)
T ss_pred hhccccCCceEEEEcchHhhCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-
Confidence 42 3345999999999953 344899999984 56678888899999999999998 543
Q ss_pred EEEecCCCHHHHHHHHHH
Q 006534 497 VVMVETPDKIGREAILKV 514 (641)
Q Consensus 497 ~I~v~~Pd~~eR~~IL~~ 514 (641)
.+.+++|+.++..+.|..
T Consensus 161 ~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred cccCCCCCHHHHHHHHHH
Confidence 678999988877776654
No 228
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=98.64 E-value=3.2e-08 Score=99.97 Aligned_cols=60 Identities=40% Similarity=0.458 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHHhcchhhhhccCChhHHHHHHHHHHHHHHHHhHHhhcCCCCCceeeEeeeecc
Q 006534 564 EKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRDSK 627 (641)
Q Consensus 564 t~~d~~~Al~rvi~g~~~~~~~ls~~ek~~va~hEaghAlv~~~l~~~~~~~~~v~kiti~~~~ 627 (641)
|++||++|+++++.|.+++...+++.+++.+||||+||||+++ ++|..+||++|||++.-
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~----~l~~~~~v~~vsi~prg 60 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAY----LLPPADPVSKVSIVPRG 60 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHH----HSSS---EEEEESSTTC
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHH----HhcccccEEEEEEecCC
Confidence 6899999999999999988788999999999999999999997 78888999999998754
No 229
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=3.4e-07 Score=97.87 Aligned_cols=133 Identities=20% Similarity=0.286 Sum_probs=90.7
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe----EEeehhhHHHH-------Hh-------h------cchHHHHHHH
Q 006534 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF----ISCSASEFVEL-------YV-------G------MGASRVRDLF 417 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pf----i~vs~se~v~~-------~v-------G------~~~~~vr~lF 417 (641)
.+.|..+||+||+|+||+++|.++|..+-+.- -.+.+..++.. ++ | .+.+.||++.
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 46778899999999999999999998763211 01111111110 00 1 1345677776
Q ss_pred HHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCC
Q 006534 418 ARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGR 493 (641)
Q Consensus 418 ~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgR 493 (641)
+.+... .-.|++||++|.+.. ..-|.||..++. +..++++|..|+.++.|.|.+++ |
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--R 163 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAINR---------------AACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--R 163 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhhCH---------------HHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--h
Confidence 655432 234999999999953 344889999885 44466777788888999999998 6
Q ss_pred cceEEEecCCCHHHHHHHHHH
Q 006534 494 FDRVVMVETPDKIGREAILKV 514 (641)
Q Consensus 494 Fd~~I~v~~Pd~~eR~~IL~~ 514 (641)
. ..+.|+.|+.++-.+.|..
T Consensus 164 C-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 164 C-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred h-eEeeCCCcCHHHHHHHHHH
Confidence 4 3788999998877776653
No 230
>PRK08181 transposase; Validated
Probab=98.61 E-value=3e-07 Score=96.16 Aligned_cols=71 Identities=20% Similarity=0.309 Sum_probs=51.8
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHhhc-chHHHHHHHHHHHhcCCceEEEcchhhhh
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (641)
..+++|+||||||||+||.+++.++ |..+++++..+++..+... ........++.. ..+.+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc
Confidence 3579999999999999999999754 7888889999888865321 112233344433 345699999998764
No 231
>PRK06526 transposase; Provisional
Probab=98.56 E-value=2.3e-07 Score=96.26 Aligned_cols=100 Identities=21% Similarity=0.317 Sum_probs=62.9
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHhhc-chHHHHHHHHHHHhcCCceEEEcchhhhhhhc
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAVAKSR 440 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r 440 (641)
+.+++|+||||||||+||.+++.++ |..++.++..++++..... ....+...+... ..+.+|+|||++.+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~~- 174 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPFE- 174 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCCC-
Confidence 4679999999999999999998875 6777777888877654321 111222333322 34579999999876422
Q ss_pred CCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC
Q 006534 441 DGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (641)
Q Consensus 441 ~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~p 481 (641)
......+.+++..... +. .+|.+||.+
T Consensus 175 ---------~~~~~~L~~li~~r~~---~~--s~IitSn~~ 201 (254)
T PRK06526 175 ---------PEAANLFFQLVSSRYE---RA--SLIVTSNKP 201 (254)
T ss_pred ---------HHHHHHHHHHHHHHHh---cC--CEEEEcCCC
Confidence 2223445555554321 22 255577765
No 232
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.55 E-value=1.5e-06 Score=98.54 Aligned_cols=209 Identities=17% Similarity=0.205 Sum_probs=117.3
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEee-hhhHH
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS-ASEFV 402 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs-~se~v 402 (641)
+...+.+.+||+-+..-.++++..++... .+....+-+||+||||||||++++.+|.+++..+..-. ...+.
T Consensus 11 ~ky~P~~~~eLavhkkKv~eV~~wl~~~~-------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~ 83 (519)
T PF03215_consen 11 EKYAPKTLDELAVHKKKVEEVRSWLEEMF-------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFR 83 (519)
T ss_pred hhcCCCCHHHhhccHHHHHHHHHHHHHHh-------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcc
Confidence 44567789999999876666666665321 12334456889999999999999999999987776542 21110
Q ss_pred ------HHHhhcc---------hHHHHHH-HHHHHh-----------cCCceEEEcchhhhhhhcCCcccccchhHHHHH
Q 006534 403 ------ELYVGMG---------ASRVRDL-FARAKK-----------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (641)
Q Consensus 403 ------~~~vG~~---------~~~vr~l-F~~A~~-----------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (641)
..+.+.. .....++ +..++. ..+.||+|||+-.+.... .......
T Consensus 84 ~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~--------~~~f~~~ 155 (519)
T PF03215_consen 84 ESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD--------TSRFREA 155 (519)
T ss_pred ccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh--------HHHHHHH
Confidence 0111110 0111111 111121 235699999997554211 1233334
Q ss_pred HHHHHhhhcCCCCCCcEEEEEe-c------CCC--------CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC-
Q 006534 456 LNQLLTEMDGFDSNSAVIVLGA-T------NRS--------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK- 519 (641)
Q Consensus 456 LnqLL~emdg~~~~~~ViVIaA-T------N~p--------d~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~- 519 (641)
|.+++.. ....++|+|.+ + |.. ..+++.++...+. .+|.|.+-...-....|+..+...
T Consensus 156 L~~~l~~----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~ 230 (519)
T PF03215_consen 156 LRQYLRS----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEA 230 (519)
T ss_pred HHHHHHc----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHh
Confidence 4444432 11116666666 1 111 1456777654344 478887766665555555555432
Q ss_pred ----CC-CCCCCCC-HHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 006534 520 ----EL-PLAKDID-LGDIASMTTGFTGADLANLVNEAALLAG 556 (641)
Q Consensus 520 ----~l-~l~~dvd-l~~LA~~t~GfSgaDL~~Lv~eAa~~A~ 556 (641)
+. ....... ++.|+..+. +||+.+++.....+.
T Consensus 231 ~~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 231 RSSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred hhhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 11 1121122 667776554 599999998877776
No 233
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.54 E-value=6e-07 Score=96.42 Aligned_cols=69 Identities=23% Similarity=0.424 Sum_probs=49.8
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHhhc---chHHHHHHHHHHHhcCCceEEEcchhhh
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM---GASRVRDLFARAKKEAPSIIFIDEIDAV 436 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~~vG~---~~~~vr~lF~~A~~~aP~ILfIDEIDaL 436 (641)
.+++|+||+|||||+||.|+|.++ |..+++++..+++..+... ........++.. ....+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCC
Confidence 789999999999999999999986 7888999999887755321 111111223322 23459999999765
No 234
>PF13173 AAA_14: AAA domain
Probab=98.54 E-value=4.5e-07 Score=83.80 Aligned_cols=69 Identities=25% Similarity=0.304 Sum_probs=47.6
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcC--CCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhh
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAV 436 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~elg--~pfi~vs~se~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL 436 (641)
+.++|+||+|+|||++++.++++.. -.++++++.+......... . +.+.+.......+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADP-D-LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhh-h-hHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999998876 7777887776544221110 0 223333322235679999999887
No 235
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=6.7e-07 Score=95.61 Aligned_cols=130 Identities=18% Similarity=0.210 Sum_probs=91.5
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----------------------eEEeehhhHHHHHhhcchHHHHHHHH
Q 006534 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-----------------------FISCSASEFVELYVGMGASRVRDLFA 418 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p-----------------------fi~vs~se~v~~~vG~~~~~vr~lF~ 418 (641)
.+.|..+||+||.|+||+.+|+++|+.+-+. |+.+...+ .-..-+.+.+|++-+
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~---~~~~I~vdqiR~l~~ 98 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK---EGKSITVEQIRQCNR 98 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc---CCCcCCHHHHHHHHH
Confidence 5678889999999999999999999875321 11121100 000123456677655
Q ss_pred HHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCc
Q 006534 419 RAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRF 494 (641)
Q Consensus 419 ~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRF 494 (641)
.+.. +.-.|++||++|.+.. ..-|.||..++. +..++++|..|+.++.|.|.+++ |-
T Consensus 99 ~~~~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RC 159 (319)
T PRK06090 99 LAQESSQLNGYRLFVIEPADAMNE---------------SASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RC 159 (319)
T ss_pred HHhhCcccCCceEEEecchhhhCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cc
Confidence 5432 2235999999999953 334889999984 55668888888889999999988 54
Q ss_pred ceEEEecCCCHHHHHHHHHH
Q 006534 495 DRVVMVETPDKIGREAILKV 514 (641)
Q Consensus 495 d~~I~v~~Pd~~eR~~IL~~ 514 (641)
..+.+++|+.++..+.|..
T Consensus 160 -q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 160 -QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred -eeEeCCCCCHHHHHHHHHH
Confidence 3789999998887776654
No 236
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.52 E-value=2.9e-06 Score=87.91 Aligned_cols=174 Identities=18% Similarity=0.279 Sum_probs=119.9
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCC-----------
Q 006534 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVP----------- 392 (641)
Q Consensus 327 ~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~p----------- 392 (641)
.+-+++.+.+.++....|+.+...-. -.++|+|||+|+||-+.+.++.+++ |++
T Consensus 8 rpksl~~l~~~~e~~~~Lksl~~~~d------------~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~t 75 (351)
T KOG2035|consen 8 RPKSLDELIYHEELANLLKSLSSTGD------------FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTT 75 (351)
T ss_pred CcchhhhcccHHHHHHHHHHhcccCC------------CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEec
Confidence 34467778888888887777664111 1369999999999999999999886 221
Q ss_pred ---------------eEEeehhhHHHHHhhc-chHHHHHHHHHHHhcCC---------ceEEEcchhhhhhhcCCccccc
Q 006534 393 ---------------FISCSASEFVELYVGM-GASRVRDLFARAKKEAP---------SIIFIDEIDAVAKSRDGRFRIV 447 (641)
Q Consensus 393 ---------------fi~vs~se~v~~~vG~-~~~~vr~lF~~A~~~aP---------~ILfIDEIDaL~~~r~~~~~~~ 447 (641)
.+.++.++ .|. ..--+.+++++..+..| .+|+|-|+|.|....|
T Consensus 76 pS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ------ 144 (351)
T KOG2035|consen 76 PSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQ------ 144 (351)
T ss_pred CCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHH------
Confidence 11222222 122 22335566665544332 3899999999976544
Q ss_pred chhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCC
Q 006534 448 SNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDI 527 (641)
Q Consensus 448 ~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dv 527 (641)
..|-+.|+.+.++. .+|..+|....+=+++++ |- ..|.++.|+.++...++...+.+.++.++.++
T Consensus 145 ---------~aLRRTMEkYs~~~--RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~ 210 (351)
T KOG2035|consen 145 ---------HALRRTMEKYSSNC--RLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKEL 210 (351)
T ss_pred ---------HHHHHHHHHHhcCc--eEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHH
Confidence 34555566666554 555567777778888887 42 36889999999999999999999998887664
Q ss_pred CHHHHHHhCCC
Q 006534 528 DLGDIASMTTG 538 (641)
Q Consensus 528 dl~~LA~~t~G 538 (641)
+..||+.+.|
T Consensus 211 -l~rIa~kS~~ 220 (351)
T KOG2035|consen 211 -LKRIAEKSNR 220 (351)
T ss_pred -HHHHHHHhcc
Confidence 7778887654
No 237
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.50 E-value=3.5e-07 Score=94.85 Aligned_cols=72 Identities=24% Similarity=0.380 Sum_probs=50.7
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHhhcch-HHHHHHHHHHHhcCCceEEEcchhhh
Q 006534 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGA-SRVRDLFARAKKEAPSIIFIDEIDAV 436 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~~vG~~~-~~vr~lF~~A~~~aP~ILfIDEIDaL 436 (641)
.+.+++|+||||||||+||-|++.++ |..++.++..+++...-..-. .....-+.... ....+|+|||+-..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l-~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL-KKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh-hcCCEEEEecccCc
Confidence 46789999999999999999999986 789999999999875432111 11111122211 23459999999765
No 238
>PRK09183 transposase/IS protein; Provisional
Probab=98.48 E-value=2.7e-07 Score=95.89 Aligned_cols=71 Identities=28% Similarity=0.394 Sum_probs=51.0
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHhhc-chHHHHHHHHHHHhcCCceEEEcchhhh
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAV 436 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL 436 (641)
..+++|+||||||||+||.+++.++ |..+..+++.++...+... ....+...+... ...+++++|||++.+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 4579999999999999999997664 7778888888877544221 112344555543 245679999999765
No 239
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.45 E-value=7e-07 Score=81.47 Aligned_cols=98 Identities=26% Similarity=0.376 Sum_probs=58.1
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhc--------CCCeEEeehhhHH------HH----Hh----h-cchHHHHHHHHHH-
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEA--------EVPFISCSASEFV------EL----YV----G-MGASRVRDLFARA- 420 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~el--------g~pfi~vs~se~v------~~----~v----G-~~~~~vr~lF~~A- 420 (641)
.+.++++||||+|||++++.++.+. +.+++.+++.... .. +. . .....+.+.+...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3568999999999999999999987 7788888765443 11 10 0 1223333444333
Q ss_pred HhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEec
Q 006534 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (641)
Q Consensus 421 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaAT 478 (641)
......+|+|||+|.+. + ...++.|...++ ..+-.+++++..
T Consensus 84 ~~~~~~~lviDe~~~l~-~-------------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S-------------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T-------------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-C-------------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 33333499999999984 1 345566655555 333344555444
No 240
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.2e-06 Score=103.44 Aligned_cols=126 Identities=33% Similarity=0.396 Sum_probs=91.9
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCC-CCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHH----
Q 006534 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGA-RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL---- 404 (641)
Q Consensus 333 DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~-~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~---- 404 (641)
.|+|++++...+.+.+..-+.. ++. .++..+||.||.|+|||-||+|+|..+ .-.|+.++.++|.+.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~g-----l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAG-----LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcc-----cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 5999999999988888764431 111 356779999999999999999999986 567899999987661
Q ss_pred -----HhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCC---------CC
Q 006534 405 -----YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS---------NS 470 (641)
Q Consensus 405 -----~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~---------~~ 470 (641)
|+|. .....+.+..+...-+||+|||||.-. ..+++.|++.+|...- -.
T Consensus 638 gsp~gyvG~--e~gg~LteavrrrP~sVVLfdeIEkAh---------------~~v~n~llq~lD~GrltDs~Gr~Vd~k 700 (898)
T KOG1051|consen 638 GSPPGYVGK--EEGGQLTEAVKRRPYSVVLFEEIEKAH---------------PDVLNILLQLLDRGRLTDSHGREVDFK 700 (898)
T ss_pred CCCcccccc--hhHHHHHHHHhcCCceEEEEechhhcC---------------HHHHHHHHHHHhcCccccCCCcEeecc
Confidence 2332 334466666667777899999998753 2355666676665422 24
Q ss_pred cEEEEEecCC
Q 006534 471 AVIVLGATNR 480 (641)
Q Consensus 471 ~ViVIaATN~ 480 (641)
++|||+|+|.
T Consensus 701 N~I~IMTsn~ 710 (898)
T KOG1051|consen 701 NAIFIMTSNV 710 (898)
T ss_pred ceEEEEeccc
Confidence 6899999886
No 241
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.44 E-value=2.1e-07 Score=91.53 Aligned_cols=70 Identities=29% Similarity=0.441 Sum_probs=48.9
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHhhc-chHHHHHHHHHHHhcCCceEEEcchhh
Q 006534 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDA 435 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDa 435 (641)
.+.+++|+||||||||+||.+++.++ |.+...++.+++++..... ......+.++... .+.+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 45689999999999999999999876 8899999999998865432 1122334444433 345999999854
No 242
>PRK06921 hypothetical protein; Provisional
Probab=98.44 E-value=2.3e-06 Score=89.42 Aligned_cols=69 Identities=26% Similarity=0.330 Sum_probs=47.7
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhc----CCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhh
Q 006534 364 PPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDA 435 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAIA~el----g~pfi~vs~se~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDa 435 (641)
...+++|+||||||||+||.|+|+++ +..+++++..+++...... .......++.. ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 45789999999999999999999975 6777888877766543221 11122222222 2356999999943
No 243
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=1.2e-06 Score=93.97 Aligned_cols=132 Identities=22% Similarity=0.311 Sum_probs=89.3
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCC--------C-----------------eEEeehhhHHHHHhh-----cchH
Q 006534 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--------P-----------------FISCSASEFVELYVG-----MGAS 411 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAIA~elg~--------p-----------------fi~vs~se~v~~~vG-----~~~~ 411 (641)
.+.|..+||+||+|+|||++|+++|+.+.+ | |+.++...-. ...| -+.+
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id 96 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKID 96 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHH
Confidence 478889999999999999999999997632 1 2222211000 0001 2456
Q ss_pred HHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChh
Q 006534 412 RVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPA 487 (641)
Q Consensus 412 ~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpA 487 (641)
.+|++.+.+.. ....|++||++|.+... ..+.|+..++... .++.+|.+|+.++.+.+.
T Consensus 97 ~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~---------------a~naLLk~LEep~--~~~~~Ilvth~~~~ll~t 159 (325)
T PRK08699 97 AVREIIDNVYLTSVRGGLRVILIHPAESMNLQ---------------AANSLLKVLEEPP--PQVVFLLVSHAADKVLPT 159 (325)
T ss_pred HHHHHHHHHhhCcccCCceEEEEechhhCCHH---------------HHHHHHHHHHhCc--CCCEEEEEeCChHhChHH
Confidence 77887777653 22349999999998533 3366777777554 335566688888889999
Q ss_pred hhCCCCcceEEEecCCCHHHHHHHHHH
Q 006534 488 LRRPGRFDRVVMVETPDKIGREAILKV 514 (641)
Q Consensus 488 LlRpgRFd~~I~v~~Pd~~eR~~IL~~ 514 (641)
+.+ |. ..+.|++|+.++..+.|..
T Consensus 160 i~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 160 IKS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 887 43 3788999998887776654
No 244
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.41 E-value=2.7e-07 Score=104.33 Aligned_cols=205 Identities=22% Similarity=0.316 Sum_probs=124.1
Q ss_pred cCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc--CCCeEEeehhhHHHH-----Hhh
Q 006534 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA--EVPFISCSASEFVEL-----YVG 407 (641)
Q Consensus 335 ~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el--g~pfi~vs~se~v~~-----~vG 407 (641)
.+.+...+.+...+..+... .-.+||.|.|||||-.|||++.+.. ..||+.++|...-+. +.|
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~----------~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFG 385 (606)
T COG3284 316 PLLDPSRATLLRKAERVAAT----------DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFG 385 (606)
T ss_pred cccCHHHHHHHHHHHHHhhc----------CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhc
Confidence 45555555555544443322 2359999999999999999998754 679999999755432 222
Q ss_pred cc--------hHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhc--------CCCCCCc
Q 006534 408 MG--------ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--------GFDSNSA 471 (641)
Q Consensus 408 ~~--------~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd--------g~~~~~~ 471 (641)
.. .+-.+..+++|..+ .+|+|||..+.-.-| ..||..+. +-...-.
T Consensus 386 y~~GafTga~~kG~~g~~~~A~gG---tlFldeIgd~p~~~Q---------------s~LLrVl~e~~v~p~g~~~~~vd 447 (606)
T COG3284 386 YVAGAFTGARRKGYKGKLEQADGG---TLFLDEIGDMPLALQ---------------SRLLRVLQEGVVTPLGGTRIKVD 447 (606)
T ss_pred cCccccccchhccccccceecCCC---ccHHHHhhhchHHHH---------------HHHHHHHhhCceeccCCcceeEE
Confidence 21 12223344444443 899999998864332 33444332 2223346
Q ss_pred EEEEEecCCCCCCChhhhCCCCcce-------EEEecCCCHHHHHH---HHHHHHhcCC---CCCCCCCCHHHHHHhCCC
Q 006534 472 VIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA---ILKVHVSKKE---LPLAKDIDLGDIASMTTG 538 (641)
Q Consensus 472 ViVIaATN~pd~LDpALlRpgRFd~-------~I~v~~Pd~~eR~~---IL~~~l~~~~---l~l~~dvdl~~LA~~t~G 538 (641)
|.||+||+++ -..|.+-|||-+ .+.+.+|...+|.+ .|..++.+.+ +.++++. +..|....+-
T Consensus 448 irvi~ath~d---l~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~-~~~l~~~~WP 523 (606)
T COG3284 448 IRVIAATHRD---LAQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDA-LARLLAYRWP 523 (606)
T ss_pred EEEEeccCcC---HHHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHH-HHHHHhCCCC
Confidence 8999999985 245566677743 34566788777754 4444444332 3344443 3344333333
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 006534 539 FTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (641)
Q Consensus 539 fSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~r 574 (641)
-+.++|.+++..+++.+ +...|...|+...+-.
T Consensus 524 GNirel~~v~~~~~~l~---~~g~~~~~dlp~~l~~ 556 (606)
T COG3284 524 GNIRELDNVIERLAALS---DGGRIRVSDLPPELLE 556 (606)
T ss_pred CcHHHHHHHHHHHHHcC---CCCeeEcccCCHHHHh
Confidence 37799999999988776 4455666666655544
No 245
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.40 E-value=3.2e-06 Score=88.57 Aligned_cols=138 Identities=20% Similarity=0.331 Sum_probs=76.8
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCC-C--eEEeehhhHHHHHhhcchHHHHHHHHHH-----------HhcCCceEEE
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV-P--FISCSASEFVELYVGMGASRVRDLFARA-----------KKEAPSIIFI 430 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~elg~-p--fi~vs~se~v~~~vG~~~~~vr~lF~~A-----------~~~aP~ILfI 430 (641)
.+++||+||+|||||++++.+-.++.- . ...++++... ++..+.++.+.. ..+..+|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 357999999999999999988776532 2 2233333221 112222222111 1123469999
Q ss_pred cchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCC-------CcEEEEEecCCC---CCCChhhhCCCCcceEEEe
Q 006534 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN-------SAVIVLGATNRS---DVLDPALRRPGRFDRVVMV 500 (641)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~-------~~ViVIaATN~p---d~LDpALlRpgRFd~~I~v 500 (641)
||+..-....- +....-+.|.|++..---++.. .++.+|||.+++ ..+++.++| .|. .+.+
T Consensus 107 DDlN~p~~d~y------gtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i~~~ 177 (272)
T PF12775_consen 107 DDLNMPQPDKY------GTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-ILNI 177 (272)
T ss_dssp ETTT-S---TT------S--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-EEE-
T ss_pred cccCCCCCCCC------CCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-EEEe
Confidence 99976543321 1222234555555432112211 367888998864 257888888 674 8899
Q ss_pred cCCCHHHHHHHHHHHHh
Q 006534 501 ETPDKIGREAILKVHVS 517 (641)
Q Consensus 501 ~~Pd~~eR~~IL~~~l~ 517 (641)
+.|+.+....|+...+.
T Consensus 178 ~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 178 PYPSDESLNTIFSSILQ 194 (272)
T ss_dssp ---TCCHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHh
Confidence 99999988888777665
No 246
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.33 E-value=1.1e-06 Score=98.93 Aligned_cols=223 Identities=21% Similarity=0.220 Sum_probs=129.8
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHh--hhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhh
Q 006534 330 TFADVAGVDEAKEELEEIVEFLRSPDKYI--RLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (641)
Q Consensus 330 tf~DV~G~~e~K~~L~eiv~~L~~p~~~~--~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~vG 407 (641)
=|..|.|.+.+|.-+.=.+ +-.-.++. ....+---+|+++|.|||||+-+.+++++-+..-.+.. +.. +.-.|
T Consensus 343 l~PsIyGhe~VK~GilL~L--fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYts-Gka--SSaAG 417 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSL--FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTS-GKA--SSAAG 417 (764)
T ss_pred hCccccchHHHHhhHHHHH--hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEec-Ccc--ccccc
Confidence 3667999999998654332 22222222 22234456799999999999999999998775544432 210 00112
Q ss_pred cchHHHHHH----H-HHHHh---cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC-----------C
Q 006534 408 MGASRVRDL----F-ARAKK---EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------S 468 (641)
Q Consensus 408 ~~~~~vr~l----F-~~A~~---~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~-----------~ 468 (641)
-++..+++- | -+|-+ .-..|..|||+|.+..+.+ ..++..|+... -
T Consensus 418 LTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dq---------------vAihEAMEQQtISIaKAGv~aTL 482 (764)
T KOG0480|consen 418 LTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQ---------------VAIHEAMEQQTISIAKAGVVATL 482 (764)
T ss_pred ceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhH---------------HHHHHHHHhheehheecceEEee
Confidence 222222110 0 00100 1123999999999865332 23344443211 1
Q ss_pred CCcEEEEEecCCCC-------------CCChhhhCCCCcceEE-EecCCCHHHHHHHHHHHHhcCCCCCCCCC------C
Q 006534 469 NSAVIVLGATNRSD-------------VLDPALRRPGRFDRVV-MVETPDKIGREAILKVHVSKKELPLAKDI------D 528 (641)
Q Consensus 469 ~~~ViVIaATN~pd-------------~LDpALlRpgRFd~~I-~v~~Pd~~eR~~IL~~~l~~~~l~l~~dv------d 528 (641)
+..--||||+|+.. .+++++++ |||..+ -++.|+...-..|-++.+.... .+++.+ .
T Consensus 483 nARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~-~i~~~~~~~~~~~ 559 (764)
T KOG0480|consen 483 NARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHR-GIDDATERVCVYT 559 (764)
T ss_pred cchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhc-ccccccccccccc
Confidence 22345888998742 56889999 999764 4577877665554444333210 000000 0
Q ss_pred -----------------------------HHHHH--------HhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 006534 529 -----------------------------LGDIA--------SMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (641)
Q Consensus 529 -----------------------------l~~LA--------~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~A 571 (641)
+..+- +.+.+.+.++|+.+++-+-.+|.-+-++.||.+|+++|
T Consensus 560 ~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea 639 (764)
T KOG0480|consen 560 LEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEA 639 (764)
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHH
Confidence 00110 11346788999999999988888888899999999999
Q ss_pred HHHH
Q 006534 572 VERS 575 (641)
Q Consensus 572 l~rv 575 (641)
++-.
T Consensus 640 ~eLl 643 (764)
T KOG0480|consen 640 VELL 643 (764)
T ss_pred HHHH
Confidence 8744
No 247
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.32 E-value=1.4e-06 Score=100.72 Aligned_cols=222 Identities=26% Similarity=0.283 Sum_probs=128.1
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhC--CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEE-eehhhHHHHHhhc
Q 006534 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLG--ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-CSASEFVELYVGM 408 (641)
Q Consensus 332 ~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg--~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~-vs~se~v~~~vG~ 408 (641)
-.|.|++++|+.+.=.+ +....+...-| .+---+|||.|.||||||.|.|.+++-+..-.+. -.++. -+|-
T Consensus 286 PsIyG~e~VKkAilLqL--fgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss----~~GL 359 (682)
T COG1241 286 PSIYGHEDVKKAILLQL--FGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSS----AAGL 359 (682)
T ss_pred ccccCcHHHHHHHHHHh--cCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEcccccc----ccCc
Confidence 35889999888654322 22221111101 2333679999999999999999999877544332 12211 1233
Q ss_pred chHHHHHHH--H---HHH---hcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC-----------CC
Q 006534 409 GASRVRDLF--A---RAK---KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SN 469 (641)
Q Consensus 409 ~~~~vr~lF--~---~A~---~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~-----------~~ 469 (641)
++..+++-+ + .|- ...+.|++|||+|.+.... -+.+...|+... -+
T Consensus 360 TAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~d---------------r~aihEaMEQQtIsIaKAGI~atLn 424 (682)
T COG1241 360 TAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEED---------------RVAIHEAMEQQTISIAKAGITATLN 424 (682)
T ss_pred eeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHH---------------HHHHHHHHHhcEeeecccceeeecc
Confidence 333333322 1 110 1124599999999874321 133444444221 12
Q ss_pred CcEEEEEecCCCC-------------CCChhhhCCCCcceEEEe-cCCCHHHHH----HHHHHHHhc-------------
Q 006534 470 SAVIVLGATNRSD-------------VLDPALRRPGRFDRVVMV-ETPDKIGRE----AILKVHVSK------------- 518 (641)
Q Consensus 470 ~~ViVIaATN~pd-------------~LDpALlRpgRFd~~I~v-~~Pd~~eR~----~IL~~~l~~------------- 518 (641)
...-|+||+|+.. .|++.|++ |||..+.+ +.||.+.-+ .++..|...
T Consensus 425 ARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~ 502 (682)
T COG1241 425 ARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDE 502 (682)
T ss_pred hhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccc
Confidence 3345788888753 57889999 99987666 457654332 244444210
Q ss_pred -----------------CCC-CCCCCCCHHHHHH-----h----------CCCCCHHHHHHHHHHHHHHHHhcCCccccH
Q 006534 519 -----------------KEL-PLAKDIDLGDIAS-----M----------TTGFTGADLANLVNEAALLAGRLNKVVVEK 565 (641)
Q Consensus 519 -----------------~~l-~l~~dvdl~~LA~-----~----------t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~ 565 (641)
..+ |.-.+-..+.|.. + +...|.++|+.+++-|-..|..+-+..|+.
T Consensus 503 ~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~ 582 (682)
T COG1241 503 VEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEE 582 (682)
T ss_pred cccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCH
Confidence 001 1111101111111 1 123578999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 006534 566 IDFIHAVERSI 576 (641)
Q Consensus 566 ~d~~~Al~rvi 576 (641)
+|+.+|++-+.
T Consensus 583 eD~~eAi~lv~ 593 (682)
T COG1241 583 EDVDEAIRLVD 593 (682)
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 248
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.31 E-value=1.2e-07 Score=101.75 Aligned_cols=221 Identities=24% Similarity=0.226 Sum_probs=110.4
Q ss_pred cccCChHHHHHHHH-HHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH--HH-----
Q 006534 333 DVAGVDEAKEELEE-IVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV--EL----- 404 (641)
Q Consensus 333 DV~G~~e~K~~L~e-iv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v--~~----- 404 (641)
+|.|.+.+|..+.= ++........ .....+..-++||+|.||||||.|.+.++.-+.... ++++.... ..
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~-~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~ 102 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDP-DGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVS 102 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCC-T-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEEC
T ss_pred cCcCcHHHHHHHHHHHHhccccccc-cccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceec
Confidence 57888887764421 1111100000 000123445899999999999999998876543322 33322110 00
Q ss_pred -HhhcchHHH-HHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC-----------CCCc
Q 006534 405 -YVGMGASRV-RDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSA 471 (641)
Q Consensus 405 -~vG~~~~~v-r~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~-----------~~~~ 471 (641)
....++-.+ ...+-.|.. .|++|||+|.+... ....|+..|+... -+..
T Consensus 103 ~d~~~~~~~leaGalvlad~---GiccIDe~dk~~~~---------------~~~~l~eaMEqq~isi~kagi~~~l~ar 164 (331)
T PF00493_consen 103 RDPVTGEWVLEAGALVLADG---GICCIDEFDKMKED---------------DRDALHEAMEQQTISIAKAGIVTTLNAR 164 (331)
T ss_dssp CCGGTSSECEEE-HHHHCTT---SEEEECTTTT--CH---------------HHHHHHHHHHCSCEEECTSSSEEEEE--
T ss_pred cccccceeEEeCCchhcccC---ceeeecccccccch---------------HHHHHHHHHHcCeeccchhhhcccccch
Confidence 000000000 112333433 49999999988431 1245555565421 1235
Q ss_pred EEEEEecCCCC-------------CCChhhhCCCCcceEEEe-cCCCHHHHHHHHHHHHhcCCC--------------CC
Q 006534 472 VIVLGATNRSD-------------VLDPALRRPGRFDRVVMV-ETPDKIGREAILKVHVSKKEL--------------PL 523 (641)
Q Consensus 472 ViVIaATN~pd-------------~LDpALlRpgRFd~~I~v-~~Pd~~eR~~IL~~~l~~~~l--------------~l 523 (641)
.-|+||+|+.. .+++.|++ |||..+.+ +.|+.+.-..+.+..++.... .+
T Consensus 165 ~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~ 242 (331)
T PF00493_consen 165 CSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPI 242 (331)
T ss_dssp -EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT
T ss_pred hhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCCcc
Confidence 67999998754 57888998 99988765 667765555554443332100 11
Q ss_pred CCCCC-------------------HHHHHH-------------hCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 006534 524 AKDID-------------------LGDIAS-------------MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (641)
Q Consensus 524 ~~dvd-------------------l~~LA~-------------~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~A 571 (641)
+.+.- .+.|.. .....+.+.|+.+++-|...|..+-+..|+.+|+..|
T Consensus 243 ~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~A 322 (331)
T PF00493_consen 243 SEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEA 322 (331)
T ss_dssp -HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHH
Confidence 11110 111111 1123566788899999999998888999999999999
Q ss_pred HHHH
Q 006534 572 VERS 575 (641)
Q Consensus 572 l~rv 575 (641)
++=.
T Consensus 323 i~L~ 326 (331)
T PF00493_consen 323 IRLF 326 (331)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8643
No 249
>PF05729 NACHT: NACHT domain
Probab=98.30 E-value=7.3e-06 Score=77.01 Aligned_cols=141 Identities=16% Similarity=0.247 Sum_probs=73.7
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhc------C--CC-eEEeehhhHHHH------------HhhcchHHHHHH-HHHHHhcC
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEA------E--VP-FISCSASEFVEL------------YVGMGASRVRDL-FARAKKEA 424 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el------g--~p-fi~vs~se~v~~------------~vG~~~~~vr~l-F~~A~~~a 424 (641)
-++|+|+||+|||++++.++..+ + .+ ++.+++.+.... ........+... ...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 48899999999999999999764 1 12 223333322211 111111112221 22233456
Q ss_pred CceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCC
Q 006534 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPD 504 (641)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd 504 (641)
+.+|+||.+|.+....+. .........+.+++.. ....+..++|.+.+.....+...+.. ...+.+...+
T Consensus 82 ~~llilDglDE~~~~~~~----~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~~ 151 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS----QERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPFS 151 (166)
T ss_pred ceEEEEechHhcccchhh----hHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCCC
Confidence 679999999999753321 0111122333344332 11222333333322222122222222 1478899999
Q ss_pred HHHHHHHHHHHHh
Q 006534 505 KIGREAILKVHVS 517 (641)
Q Consensus 505 ~~eR~~IL~~~l~ 517 (641)
.++..++++.+++
T Consensus 152 ~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 152 EEDIKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998875
No 250
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.29 E-value=1.8e-06 Score=95.15 Aligned_cols=231 Identities=23% Similarity=0.200 Sum_probs=131.2
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEe-ehhhHHHHHhhcch
Q 006534 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC-SASEFVELYVGMGA 410 (641)
Q Consensus 332 ~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~v-s~se~v~~~vG~~~ 410 (641)
-+|.|++++|+.|.-++----+...-.-+..+-.-+|+|.|.||+.|+-|.+++..-+..-.+.. .++ .-+|.++
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS----SGVGLTA 417 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS----SGVGLTA 417 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC----Cccccch
Confidence 36999999999887665442211111112233446799999999999999999998765444432 111 1133333
Q ss_pred HHHHHHH-----------HHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006534 411 SRVRDLF-----------ARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 411 ~~vr~lF-----------~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN 479 (641)
.-+++-. -.|. ..|.+|||+|.+....- ...++..+|.--.+-..--.-.-+...-|+||.|
T Consensus 418 AVmkDpvTgEM~LEGGALVLAD---~GICCIDEfDKM~e~DR----tAIHEVMEQQTISIaKAGI~TtLNAR~sILaAAN 490 (721)
T KOG0482|consen 418 AVMKDPVTGEMVLEGGALVLAD---GGICCIDEFDKMDESDR----TAIHEVMEQQTISIAKAGINTTLNARTSILAAAN 490 (721)
T ss_pred hhhcCCCCCeeEeccceEEEcc---CceEeehhhhhhhhhhh----HHHHHHHHhhhhhhhhhccccchhhhHHhhhhcC
Confidence 3333211 1122 23899999999864321 2234444432222221100011234556888888
Q ss_pred CCC-------------CCChhhhCCCCcceEEEe-cCCCHHHHHHHHHH----HHhcCCCCCC-CCCCHH----------
Q 006534 480 RSD-------------VLDPALRRPGRFDRVVMV-ETPDKIGREAILKV----HVSKKELPLA-KDIDLG---------- 530 (641)
Q Consensus 480 ~pd-------------~LDpALlRpgRFd~~I~v-~~Pd~~eR~~IL~~----~l~~~~l~l~-~dvdl~---------- 530 (641)
+.. .|+.||++ |||...-+ +.||.+.-..+.++ |...+.-++. +.++.+
T Consensus 491 PayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak 568 (721)
T KOG0482|consen 491 PAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAK 568 (721)
T ss_pred ccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHh
Confidence 641 68999999 99976544 56776544443332 2222111100 001111
Q ss_pred ------------HH----------HH--hCC-CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHH
Q 006534 531 ------------DI----------AS--MTT-GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (641)
Q Consensus 531 ------------~L----------A~--~t~-GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~rv 575 (641)
.| ++ ... -.|++.|-.+++-+..+|..+-...|..+|+.+|+.-.
T Consensus 569 ~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLm 638 (721)
T KOG0482|consen 569 RKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLM 638 (721)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 11 10 011 23788999999999889988888999999999999643
No 251
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.27 E-value=4.3e-06 Score=90.99 Aligned_cols=103 Identities=20% Similarity=0.300 Sum_probs=62.2
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCC-CeEEeehhhHHHHHhh------cchHHHHHHHHHHHhcCCceEEEcchh
Q 006534 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-PFISCSASEFVELYVG------MGASRVRDLFARAKKEAPSIIFIDEID 434 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAIA~elg~-pfi~vs~se~v~~~vG------~~~~~vr~lF~~A~~~aP~ILfIDEID 434 (641)
...|+|++||||+|+|||+|.-.+...+.. .-..++-.+|+..... .....+..+-+...... .+|+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~-~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKES-RLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcC-CEEEEeeee
Confidence 457999999999999999999999887754 1112222233221110 11222333333333332 399999986
Q ss_pred hhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC
Q 006534 435 AVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (641)
Q Consensus 435 aL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~p 481 (641)
--. -.....+..|+..+- ..++++|+|+|++
T Consensus 138 V~D------------iaDAmil~rLf~~l~----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VTD------------IADAMILKRLFEALF----KRGVVLVATSNRP 168 (362)
T ss_pred ccc------------hhHHHHHHHHHHHHH----HCCCEEEecCCCC
Confidence 421 111345566666653 4678999999986
No 252
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.26 E-value=7.6e-06 Score=93.09 Aligned_cols=200 Identities=27% Similarity=0.289 Sum_probs=101.6
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHH-----HHHHHHHH---hcCCceEEEcchh
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRV-----RDLFARAK---KEAPSIIFIDEID 434 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~vG~~~~~v-----r~lF~~A~---~~aP~ILfIDEID 434 (641)
+.--+|||+|.||||||.+.+.+++-+..-.+ .++.. +.-+|.++-.. +++.-+.- .....|.+|||+|
T Consensus 460 R~~INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkG--sSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFD 536 (804)
T KOG0478|consen 460 RGDINILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKG--SSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFD 536 (804)
T ss_pred cccceEEEecCCCcCHHHHHHHHHHhCCccee-ecCCc--cchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhh
Confidence 33467999999999999999999987643222 22210 00011111000 11111110 0113488999999
Q ss_pred hhhhhcCCcccccchhHHHH-HHHHHHhh-hcCCCCCCcEEEEEecCCCC-------------CCChhhhCCCCcceEE-
Q 006534 435 AVAKSRDGRFRIVSNDEREQ-TLNQLLTE-MDGFDSNSAVIVLGATNRSD-------------VLDPALRRPGRFDRVV- 498 (641)
Q Consensus 435 aL~~~r~~~~~~~~~~e~~~-~LnqLL~e-mdg~~~~~~ViVIaATN~pd-------------~LDpALlRpgRFd~~I- 498 (641)
.+...... ..++..+| +++--..- +.. -+..--|||+.|+.+ .|+|.|++ |||.++
T Consensus 537 KM~dStrS----vLhEvMEQQTvSIAKAGII~s--LNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIyl 608 (804)
T KOG0478|consen 537 KMSDSTRS----VLHEVMEQQTLSIAKAGIIAS--LNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFL 608 (804)
T ss_pred hhhHHHHH----HHHHHHHHhhhhHhhcceeee--ccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEE
Confidence 99533211 11222221 11100000 111 133456889998531 67899999 999775
Q ss_pred EecCCCHHHHHHHH----HHHHhc----------------------C-CCC-CCCCCCHHHH-HH----hC----CC---
Q 006534 499 MVETPDKIGREAIL----KVHVSK----------------------K-ELP-LAKDIDLGDI-AS----MT----TG--- 538 (641)
Q Consensus 499 ~v~~Pd~~eR~~IL----~~~l~~----------------------~-~l~-l~~dvdl~~L-A~----~t----~G--- 538 (641)
-++.||...-+.+- ..|... + ..+ +.+++ ...+ +. +. .|
T Consensus 609 llD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea-~~~l~~ayvd~rk~~~~~~~it 687 (804)
T KOG0478|consen 609 LLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEA-SQALIQAYVDMRKIGEGAGQIT 687 (804)
T ss_pred EecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHhccCCccccHHH-HHHHHHHhhhhhhhcccccccc
Confidence 44778765222222 222211 0 011 11111 1111 10 00 11
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 006534 539 FTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (641)
Q Consensus 539 fSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~r 574 (641)
-++++++.|++.+...|..+....+...|+++|+.-
T Consensus 688 at~rQlesLiRlsEahak~r~s~~ve~~dV~eA~~l 723 (804)
T KOG0478|consen 688 ATPRQLESLIRLSEAHAKMRLSNRVEEIDVEEAVRL 723 (804)
T ss_pred hhHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 256788888888777777777788888888888653
No 253
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.26 E-value=5.8e-06 Score=77.00 Aligned_cols=109 Identities=20% Similarity=0.220 Sum_probs=62.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHh----------------------hc--chHHHHHHHHHH
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV----------------------GM--GASRVRDLFARA 420 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~~v----------------------G~--~~~~vr~lF~~A 420 (641)
++|+||||+|||+++..++..+ +.+.+.++......... .. .....+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 56666666543322110 00 011112234455
Q ss_pred HhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC
Q 006534 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (641)
Q Consensus 421 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~p 481 (641)
....|.+|+|||+..+....... .........+.+..++..+. ..++.+|++++..
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~ 137 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREI-REGYPGELDEELRELLERAR----KGGVTVIFTLQVP 137 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHh----cCCceEEEEEecC
Confidence 56778899999999987543210 01122233445555555543 2345555555443
No 254
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.22 E-value=4.4e-05 Score=85.45 Aligned_cols=208 Identities=14% Similarity=0.156 Sum_probs=108.5
Q ss_pred cCCCccccccccCChHHHHHHHHHHH---HhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehh-
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVE---FLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS- 399 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~---~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~s- 399 (641)
++..+-+.++|+-+..-..++++.+. .++. .-..+-+||+||+|||||+.++.++.|+|+.++.-+..
T Consensus 74 eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~--------~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi 145 (634)
T KOG1970|consen 74 EKYKPRTLEELAVHKKKISEVKQWLKQVAEFTP--------KLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPI 145 (634)
T ss_pred HhcCcccHHHHhhhHHhHHHHHHHHHHHHHhcc--------CCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCc
Confidence 34445567777766544444443333 1111 11234588999999999999999999999877765411
Q ss_pred ------------hHHHHHhhcchHHHHHHHHHHHh------------cCCceEEEcchhhhhhhcCCcccccchhHHHHH
Q 006534 400 ------------EFVELYVGMGASRVRDLFARAKK------------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (641)
Q Consensus 400 ------------e~v~~~vG~~~~~vr~lF~~A~~------------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (641)
.+...+...--.........+.+ ..+.+|+|||+-...... ....
T Consensus 146 ~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d-----------~~~~ 214 (634)
T KOG1970|consen 146 NLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD-----------DSET 214 (634)
T ss_pred cccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh-----------hHHH
Confidence 11111111111111222222211 235689999997664321 1233
Q ss_pred HHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhC------CCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCC----
Q 006534 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRR------PGRFDRVVMVETPDKIGREAILKVHVSKKELPLAK---- 525 (641)
Q Consensus 456 LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlR------pgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~---- 525 (641)
+..+|.+.-.....+-|++|.-.+.++..++..+. ..|.+ .|.|.+-...--...|+..+.....+...
T Consensus 215 f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~ 293 (634)
T KOG1970|consen 215 FREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICRIEANKKSGIKVP 293 (634)
T ss_pred HHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHHHHHhcccccCCcCc
Confidence 33344433333323323333333333433333322 12443 67777666666666676666654444432
Q ss_pred -CCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 006534 526 -DIDLGDIASMTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 526 -dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A 555 (641)
...++.++.. +++||+.+++...+.+
T Consensus 294 ~~~~v~~i~~~----s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 294 DTAEVELICQG----SGGDIRSAINSLQLSS 320 (634)
T ss_pred hhHHHHHHHHh----cCccHHHHHhHhhhhc
Confidence 2234444443 5679999999887775
No 255
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.21 E-value=5e-05 Score=78.26 Aligned_cols=186 Identities=22% Similarity=0.242 Sum_probs=114.4
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcC---CCeEEee-----hhhHHHHHhhc------------chHHHHHHHHHHHh-cCC
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAE---VPFISCS-----ASEFVELYVGM------------GASRVRDLFARAKK-EAP 425 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg---~pfi~vs-----~se~v~~~vG~------------~~~~vr~lF~~A~~-~aP 425 (641)
-+.++|+-|+|||++.||+...++ +-.+.++ .+.+.+.++.+ .+..-+.+....++ ..|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 377999999999999997776653 2223333 23333332222 12222333443333 445
Q ss_pred ceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCC------CCcceEEE
Q 006534 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRP------GRFDRVVM 499 (641)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRp------gRFd~~I~ 499 (641)
-++++||.+.+.... . ..+.-|.+.-+++...-.+++|+-.. |.+.+++| -|++..|+
T Consensus 133 v~l~vdEah~L~~~~---------l---e~Lrll~nl~~~~~~~l~ivL~Gqp~----L~~~lr~~~l~e~~~R~~ir~~ 196 (269)
T COG3267 133 VVLMVDEAHDLNDSA---------L---EALRLLTNLEEDSSKLLSIVLIGQPK----LRPRLRLPVLRELEQRIDIRIE 196 (269)
T ss_pred eEEeehhHhhhChhH---------H---HHHHHHHhhcccccCceeeeecCCcc----cchhhchHHHHhhhheEEEEEe
Confidence 799999999985322 1 12222222222333333466665442 33322111 27776788
Q ss_pred ecCCCHHHHHHHHHHHHhcCC--CCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHH
Q 006534 500 VETPDKIGREAILKVHVSKKE--LPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (641)
Q Consensus 500 v~~Pd~~eR~~IL~~~l~~~~--l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~ 569 (641)
+++.+.++-...++.+++.-+ .++-.+-.+..+...+.| .|+-+.+++..|...|...++..|+...+.
T Consensus 197 l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 197 LPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred cCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 899999989999999987642 233333346777888887 788999999999999998898888876554
No 256
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.14 E-value=3e-05 Score=96.11 Aligned_cols=158 Identities=20% Similarity=0.285 Sum_probs=92.0
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe---EEeehh---h
Q 006534 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF---ISCSAS---E 400 (641)
Q Consensus 327 ~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pf---i~vs~s---e 400 (641)
+...+++++|.++..+++.+++.. .....+-|-|+||+|+|||+||+++++.....| +.++.. .
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 345688999999988888777642 223356688999999999999999988764433 111110 0
Q ss_pred HHHHHh-----------hcchHHHH-------------HHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHH
Q 006534 401 FVELYV-----------GMGASRVR-------------DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (641)
Q Consensus 401 ~v~~~v-----------G~~~~~vr-------------~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (641)
..+.+. ......+. ...+......+.+|++||+|.. ..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-----------------~~l 311 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-----------------DVL 311 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-----------------HHH
Confidence 000000 00000000 1122223355678999998643 123
Q ss_pred HHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc
Q 006534 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (641)
Q Consensus 457 nqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~ 518 (641)
..+....+.+.. +-.||.||.. ..+++....++.+.++.|+.++..+++..++-+
T Consensus 312 ~~L~~~~~~~~~--GsrIIiTTrd-----~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 312 DALAGQTQWFGS--GSRIIVITKD-----KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFK 366 (1153)
T ss_pred HHHHhhCccCCC--CcEEEEEeCc-----HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcC
Confidence 333333333322 2344446653 334433356788999999999999999988754
No 257
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.09 E-value=1.2e-05 Score=79.90 Aligned_cols=115 Identities=16% Similarity=0.216 Sum_probs=64.5
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHH-HHHhhc----------------------chHHHH
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV-ELYVGM----------------------GASRVR 414 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v-~~~vG~----------------------~~~~vr 414 (641)
|.....-++++||||+|||+++..++.+. +.+.++++..++. +.+... ....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 44555668999999999999999988643 6667777765421 111000 011133
Q ss_pred HHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006534 415 DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 415 ~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN 479 (641)
.+.+.+....|++|+||-|.++....... ....+.+.+..++..+..+....++.++.+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~~~----~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLELSD----DRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHhCC----ccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 34444555578999999999986432110 11122223333333343333345566666543
No 258
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.05 E-value=5.1e-05 Score=78.63 Aligned_cols=174 Identities=22% Similarity=0.288 Sum_probs=90.3
Q ss_pred HHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHh--cCCC-----eEEeehh----hHHH----HHhh
Q 006534 343 ELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE--AEVP-----FISCSAS----EFVE----LYVG 407 (641)
Q Consensus 343 ~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~e--lg~p-----fi~vs~s----e~v~----~~vG 407 (641)
+++++.+.|... ....+-|.|+|++|+|||+||+.++.. .... ++.+... ++.. ....
T Consensus 4 ~~~~l~~~L~~~-------~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 4 EIEKLKDWLLDN-------SNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp HHHHHHHHHHTT-------TTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCC-------CCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 455666665442 134567899999999999999999987 3322 2222211 1111 1111
Q ss_pred --------cchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006534 408 --------MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 408 --------~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN 479 (641)
.....+.+.+.......+++|+||+++... .+..+...+.... .+..||.||.
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~-----------------~~~~l~~~~~~~~--~~~kilvTTR 137 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE-----------------DLEELREPLPSFS--SGSKILVTTR 137 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH-----------------HH-------HCHH--SS-EEEEEES
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccc-----------------ccccccccccccc--cccccccccc
Confidence 112233444444555669999999987642 1122222221111 2345555665
Q ss_pred CCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCC-CCC-CCCCHHHHHHhCCCCCHHHHHHH
Q 006534 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKEL-PLA-KDIDLGDIASMTTGFTGADLANL 547 (641)
Q Consensus 480 ~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l-~l~-~dvdl~~LA~~t~GfSgaDL~~L 547 (641)
..... .... .-+..+.++..+.++-.+++...+..... ... .+-....|++.+.| .|--|.-+
T Consensus 138 ~~~v~-~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 202 (287)
T PF00931_consen 138 DRSVA-GSLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLI 202 (287)
T ss_dssp CGGGG-TTHH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred ccccc-cccc---cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 43221 1111 11468999999999999999998765430 111 11135678888877 44444444
No 259
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.00 E-value=3e-05 Score=81.87 Aligned_cols=122 Identities=14% Similarity=0.164 Sum_probs=80.7
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH--------HH-hh----cchHHHHHHHHHHHh----cC
Q 006534 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE--------LY-VG----MGASRVRDLFARAKK----EA 424 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~--------~~-vG----~~~~~vr~lF~~A~~----~a 424 (641)
.+.|..+||+||+|+||+.+|.++|..+-+.--.-.|..+.. .+ .+ -+.+.+|++.+.+.. ..
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCC
Confidence 467788999999999999999999997644210011111100 00 11 134566776665543 22
Q ss_pred CceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCC
Q 006534 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETP 503 (641)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~P 503 (641)
..|++||++|.+... .-|.||..++. +..++++|..|+.++.|.|.+++ |.. .+.|+++
T Consensus 96 ~kv~ii~~ad~mt~~---------------AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 96 YKIYIIHEADRMTLD---------------AISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred ceEEEEechhhcCHH---------------HHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 349999999998643 34889999884 55677888888888999999987 532 5556543
No 260
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.98 E-value=7.4e-05 Score=76.63 Aligned_cols=135 Identities=19% Similarity=0.201 Sum_probs=75.5
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCccc
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFR 445 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~ 445 (641)
.+..++||+|||||.++|++|..+|.+++.++|++-.+ ...+..+|.-+... .+-+++||++.|...-
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~~~v----- 100 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLSEEV----- 100 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSHHH-----
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-CchhhhhhhhhhhHHH-----
Confidence 46789999999999999999999999999999987543 35566777665554 4599999999885321
Q ss_pred ccchhHHHHHHHHHHhhhcCCC-----------CCCcEEEEEecCCC----CCCChhhhCCCCcceEEEecCCCHHHHHH
Q 006534 446 IVSNDEREQTLNQLLTEMDGFD-----------SNSAVIVLGATNRS----DVLDPALRRPGRFDRVVMVETPDKIGREA 510 (641)
Q Consensus 446 ~~~~~e~~~~LnqLL~emdg~~-----------~~~~ViVIaATN~p----d~LDpALlRpgRFd~~I~v~~Pd~~eR~~ 510 (641)
-....+.+..+...+..-. -+...-+..+.|+. ..||+.|+. -| |.|.+..||...
T Consensus 101 ---LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~~--- 171 (231)
T PF12774_consen 101 ---LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLSL--- 171 (231)
T ss_dssp ---HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HHH---
T ss_pred ---HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHHH---
Confidence 0111122222222222110 11223344455532 578888876 34 689999998775
Q ss_pred HHHHHHhcCCC
Q 006534 511 ILKVHVSKKEL 521 (641)
Q Consensus 511 IL~~~l~~~~l 521 (641)
|.+..+--.+.
T Consensus 172 I~ei~L~s~GF 182 (231)
T PF12774_consen 172 IAEILLLSQGF 182 (231)
T ss_dssp HHHHHHHCCCT
T ss_pred HHHHHHHHcCc
Confidence 44444443343
No 261
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.94 E-value=3.1e-05 Score=78.78 Aligned_cols=74 Identities=26% Similarity=0.304 Sum_probs=42.5
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhh-HH---------HHHhhcchHHHHHHHHHHH--hcCCceEEE
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE-FV---------ELYVGMGASRVRDLFARAK--KEAPSIIFI 430 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se-~v---------~~~vG~~~~~vr~lF~~A~--~~aP~ILfI 430 (641)
+.|.-+||||+||+|||++|+.+++. ..++..+.+. .+ ..-.......+.+.+..+. .....+|+|
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVI 87 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVI 87 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEE
Confidence 34667999999999999999999742 2223232211 00 0000111223334343332 233569999
Q ss_pred cchhhhhh
Q 006534 431 DEIDAVAK 438 (641)
Q Consensus 431 DEIDaL~~ 438 (641)
|+|+.+..
T Consensus 88 DsI~~l~~ 95 (220)
T TIGR01618 88 DNISALQN 95 (220)
T ss_pred ecHHHHHH
Confidence 99999865
No 262
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.94 E-value=1.5e-05 Score=76.62 Aligned_cols=59 Identities=29% Similarity=0.459 Sum_probs=35.7
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC---eEEeehhhH
Q 006534 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSASEF 401 (641)
Q Consensus 334 V~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p---fi~vs~se~ 401 (641)
++|.++..++|...+.. . ....++.++|+|++|+|||+|++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T--------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-H--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 57888877777766641 1 23456789999999999999999988765322 666665544
No 263
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.88 E-value=0.00012 Score=70.98 Aligned_cols=71 Identities=25% Similarity=0.271 Sum_probs=45.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHH------hhc-----------------------chH----
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY------VGM-----------------------GAS---- 411 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~~------vG~-----------------------~~~---- 411 (641)
+|++||||||||+|+..++.+. |.+.++++..+-.+.+ .|. +..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999886643 6677666643222110 010 000
Q ss_pred -HHHHHHHHHHhcCCceEEEcchhhhhh
Q 006534 412 -RVRDLFARAKKEAPSIIFIDEIDAVAK 438 (641)
Q Consensus 412 -~vr~lF~~A~~~aP~ILfIDEIDaL~~ 438 (641)
.+..+...+....|.+|+|||+..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 123334444566799999999988753
No 264
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.86 E-value=0.00018 Score=79.45 Aligned_cols=77 Identities=10% Similarity=0.132 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHh----cCCCeEEeehhhHHHHHhhcchHHHH
Q 006534 339 EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSASEFVELYVGMGASRVR 414 (641)
Q Consensus 339 e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~e----lg~pfi~vs~se~v~~~vG~~~~~vr 414 (641)
.....|..++.++.. ..++++.||+|||||++|.+++.. .| -.++.+.++.....
T Consensus 194 ~k~~~L~rl~~fve~-----------~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~~------- 252 (449)
T TIGR02688 194 QKLLLLARLLPLVEP-----------NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIST------- 252 (449)
T ss_pred HHHHHHHhhHHHHhc-----------CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHHH-------
Confidence 334445555555544 346999999999999999998776 24 23344444332211
Q ss_pred HHHHHHHhcCCceEEEcchhhhhh
Q 006534 415 DLFARAKKEAPSIIFIDEIDAVAK 438 (641)
Q Consensus 415 ~lF~~A~~~aP~ILfIDEIDaL~~ 438 (641)
..+. .-....+|+|||+..+.-
T Consensus 253 ~~lg--~v~~~DlLI~DEvgylp~ 274 (449)
T TIGR02688 253 RQIG--LVGRWDVVAFDEVATLKF 274 (449)
T ss_pred HHHh--hhccCCEEEEEcCCCCcC
Confidence 1111 123456999999988643
No 265
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.84 E-value=7.7e-05 Score=79.97 Aligned_cols=127 Identities=20% Similarity=0.253 Sum_probs=72.3
Q ss_pred ChHHHHHHHHHHHHhcChhHH----hhh---CCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe-EEeehhhHHHH----
Q 006534 337 VDEAKEELEEIVEFLRSPDKY----IRL---GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-ISCSASEFVEL---- 404 (641)
Q Consensus 337 ~~e~K~~L~eiv~~L~~p~~~----~~l---g~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pf-i~vs~se~v~~---- 404 (641)
+..+.+.|.++.+.+..+..- ..+ ...+|+|+.|||+-|.|||+|.-.+...+..+- ..+.--.|+-.
T Consensus 30 Q~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~ 109 (367)
T COG1485 30 QPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQR 109 (367)
T ss_pred HHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHH
Confidence 455556666666543322211 112 234789999999999999999999988775432 22332333321
Q ss_pred ---HhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC
Q 006534 405 ---YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (641)
Q Consensus 405 ---~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~p 481 (641)
..|+. .-+..+-+...++ -.||+|||++- .+-...-++..|+.++- ..+|++++|+|.+
T Consensus 110 l~~l~g~~-dpl~~iA~~~~~~-~~vLCfDEF~V------------tDI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~ 171 (367)
T COG1485 110 LHTLQGQT-DPLPPIADELAAE-TRVLCFDEFEV------------TDIADAMILGRLLEALF----ARGVVLVATSNTA 171 (367)
T ss_pred HHHHcCCC-CccHHHHHHHHhc-CCEEEeeeeee------------cChHHHHHHHHHHHHHH----HCCcEEEEeCCCC
Confidence 12322 2222222222222 23999999853 11122346666777664 3589999999974
No 266
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.83 E-value=0.00022 Score=75.81 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=85.2
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCC-----------C--eEEeehhhHHHHHhhcchHHHHHHHHHHHh-----cC
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----------P--FISCSASEFVELYVGMGASRVRDLFARAKK-----EA 424 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~elg~-----------p--fi~vs~se~v~~~vG~~~~~vr~lF~~A~~-----~a 424 (641)
+.+...||+|+.|.||+.+|++++..+-+ | ++.++... ...+...++++.+.... +.
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g-----~~i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD-----KDLSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC-----CcCCHHHHHHHHHHhccCCcccCC
Confidence 45667899999999999999999987622 2 22222000 01123456666655532 24
Q ss_pred CceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCC
Q 006534 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPD 504 (641)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd 504 (641)
..|++||++|.+.. +..|.||..++. ++..+++|..|+.++.|-+.+++ |- ..+.+.+|+
T Consensus 91 ~KvvII~~~e~m~~---------------~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~ 150 (299)
T PRK07132 91 KKILIIKNIEKTSN---------------SLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPD 150 (299)
T ss_pred ceEEEEecccccCH---------------HHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCC
Confidence 45999999988742 344788888885 34456666666677889899887 42 378999998
Q ss_pred HHHHHHHHHH
Q 006534 505 KIGREAILKV 514 (641)
Q Consensus 505 ~~eR~~IL~~ 514 (641)
.++..+.|..
T Consensus 151 ~~~l~~~l~~ 160 (299)
T PRK07132 151 QQKILAKLLS 160 (299)
T ss_pred HHHHHHHHHH
Confidence 8877766654
No 267
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.00031 Score=73.11 Aligned_cols=121 Identities=13% Similarity=0.159 Sum_probs=79.7
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----eEEe-ehhhHHH--------HHh---hcchHHHHHHHHHHHh---
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-----FISC-SASEFVE--------LYV---GMGASRVRDLFARAKK--- 422 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~elg~p-----fi~v-s~se~v~--------~~v---G~~~~~vr~lF~~A~~--- 422 (641)
.+|..+||+||+|+||..+|.++|..+-+. .-.| +|..+.. .+. .-+.+.+|++.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 467789999999999999999999875321 1000 1111110 000 1234556666554432
Q ss_pred --cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEe
Q 006534 423 --EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMV 500 (641)
Q Consensus 423 --~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v 500 (641)
....|++||++|.+.. ...|.||..++. +..++++|..|+.++.+.|.+++ |-. .+.+
T Consensus 85 e~~~~KV~II~~ae~m~~---------------~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~ 144 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK---------------QSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCV-QYVV 144 (261)
T ss_pred hcCCCEEEEeccHhhhCH---------------HHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--hee-eeec
Confidence 2245999999999853 345889999984 56678888889889999999998 532 4555
Q ss_pred cCC
Q 006534 501 ETP 503 (641)
Q Consensus 501 ~~P 503 (641)
+.+
T Consensus 145 ~~~ 147 (261)
T PRK05818 145 LSK 147 (261)
T ss_pred CCh
Confidence 554
No 268
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=0.00024 Score=75.17 Aligned_cols=155 Identities=16% Similarity=0.234 Sum_probs=93.5
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-------eEEe-ehh--------hHHHHH-hh--cchHHHHHHHHHHHh
Q 006534 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC-SAS--------EFVELY-VG--MGASRVRDLFARAKK 422 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p-------fi~v-s~s--------e~v~~~-vG--~~~~~vr~lF~~A~~ 422 (641)
.+.+..+||+|| +||+++|+++|..+-+. .-.| +|. |+.... .| -+...+|++.+.+..
T Consensus 21 ~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~ 98 (290)
T PRK07276 21 DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQ 98 (290)
T ss_pred CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhh
Confidence 467788999996 68999999999865321 1111 111 111000 11 134677777666543
Q ss_pred ----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEE
Q 006534 423 ----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVV 498 (641)
Q Consensus 423 ----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I 498 (641)
....|++||++|.+.. ..-|.||..++. +..++++|..|+.++.|-|.+++ |- ..+
T Consensus 99 ~p~~~~~kV~II~~ad~m~~---------------~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i 158 (290)
T PRK07276 99 SGYEGKQQVFIIKDADKMHV---------------NAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RT-QIF 158 (290)
T ss_pred CcccCCcEEEEeehhhhcCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cc-eee
Confidence 2235999999999853 334889999984 44567888888888999999988 53 367
Q ss_pred EecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHH
Q 006534 499 MVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLV 548 (641)
Q Consensus 499 ~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv 548 (641)
.|+. +.++..+++. +.+++ .+ ...++....| ++.....+.
T Consensus 159 ~f~~-~~~~~~~~L~----~~g~~--~~--~a~~la~~~~-s~~~A~~l~ 198 (290)
T PRK07276 159 HFPK-NEAYLIQLLE----QKGLL--KT--QAELLAKLAQ-STSEAEKLA 198 (290)
T ss_pred eCCC-cHHHHHHHHH----HcCCC--hH--HHHHHHHHCC-CHHHHHHHh
Confidence 7755 4444444443 33332 21 2333333445 666666555
No 269
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.81 E-value=0.00014 Score=80.83 Aligned_cols=229 Identities=24% Similarity=0.276 Sum_probs=119.6
Q ss_pred cccCChHHHHHHHHHHHHhcChhHH-hhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchH
Q 006534 333 DVAGVDEAKEELEEIVEFLRSPDKY-IRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGAS 411 (641)
Q Consensus 333 DV~G~~e~K~~L~eiv~~L~~p~~~-~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~vG~~~~ 411 (641)
.|.|.+++|+.+.=++---.. +.. ..+..+-.-+|||.|.|||.|+-|.|-+-.-+.+-++. ++.. +.-.|.++.
T Consensus 332 SIfG~~DiKkAiaClLFgGsr-K~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYT-SGKG--SSAAGLTAS 407 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSR-KRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYT-SGKG--SSAAGLTAS 407 (729)
T ss_pred hhcCchhHHHHHHHHhhcCcc-ccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEe-cCCC--cccccceee
Confidence 477888887766544421100 000 01112233569999999999999999886654333322 2110 000111222
Q ss_pred HHHHHH-----------HHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCC
Q 006534 412 RVRDLF-----------ARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (641)
Q Consensus 412 ~vr~lF-----------~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~ 480 (641)
-+|+-- -.|. ..|++|||+|.+-... ...-++..+|..-.+-..--.-.-+...-|+||.|.
T Consensus 408 V~RD~~tReFylEGGAMVLAD---gGVvCIDEFDKMre~D----RVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANp 480 (729)
T KOG0481|consen 408 VIRDPSTREFYLEGGAMVLAD---GGVVCIDEFDKMREDD----RVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANP 480 (729)
T ss_pred EEecCCcceEEEecceEEEec---CCEEEeehhhccCchh----hhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCC
Confidence 222110 0111 2499999999984321 122333333322222211101112445678888886
Q ss_pred C-----------CCCC--hhhhCCCCcceEEEecCCCHHHHH-----HHHHHHHhcCCCCCC------CCCCHHHHHH--
Q 006534 481 S-----------DVLD--PALRRPGRFDRVVMVETPDKIGRE-----AILKVHVSKKELPLA------KDIDLGDIAS-- 534 (641)
Q Consensus 481 p-----------d~LD--pALlRpgRFd~~I~v~~Pd~~eR~-----~IL~~~l~~~~l~l~------~dvdl~~LA~-- 534 (641)
+ +.+| +.+++ |||..+-+..-..++|- .++..|..+.+..-+ ..+.++.+-+
T Consensus 481 vfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI 558 (729)
T KOG0481|consen 481 VFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYI 558 (729)
T ss_pred ccccccccCCcccccchhhhHhh--hccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHH
Confidence 4 2333 77888 99988777644333332 345555542211111 1112111110
Q ss_pred ----------------------------------------hCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 006534 535 ----------------------------------------MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (641)
Q Consensus 535 ----------------------------------------~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~r 574 (641)
.+--.+.++|+.+++-+-.+|..+-....|..|+++|+.-
T Consensus 559 ~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RL 638 (729)
T KOG0481|consen 559 QYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEEALRL 638 (729)
T ss_pred HHHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHH
Confidence 1112456889999988888888888888999999999863
No 270
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.78 E-value=2e-05 Score=93.75 Aligned_cols=205 Identities=16% Similarity=0.223 Sum_probs=121.0
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChh--HHhhhCCCCC-C-eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006534 327 DTITFADVAGVDEAKEELEEIVEFLRSPD--KYIRLGARPP-R-GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 327 ~~vtf~DV~G~~e~K~~L~eiv~~L~~p~--~~~~lg~~~p-k-gVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v 402 (641)
.+....++.|....-..+.+-++..+.++ .|...+.... . .+|++||||+|||+.|.++|.+.|..++..|.++..
T Consensus 315 ~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~R 394 (871)
T KOG1968|consen 315 QPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVR 394 (871)
T ss_pred ccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCccccc
Confidence 34445566666655544443333332221 1221111111 2 379999999999999999999999999999988654
Q ss_pred HHHh-----hc--chHHHHHHHH---HHHh-cCC-ceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCC
Q 006534 403 ELYV-----GM--GASRVRDLFA---RAKK-EAP-SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (641)
Q Consensus 403 ~~~v-----G~--~~~~vr~lF~---~A~~-~aP-~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~ 470 (641)
+... +. +...+...|. .... ... .||++||+|.+.. .+. ++ -+.+.++.. ..
T Consensus 395 Sk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~dR----g~----v~~l~~l~~-------ks 458 (871)
T KOG1968|consen 395 SKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-EDR----GG----VSKLSSLCK-------KS 458 (871)
T ss_pred cccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-hhh----hh----HHHHHHHHH-------hc
Confidence 4321 11 2223333330 0000 112 2999999999865 111 01 122333333 12
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHH
Q 006534 471 AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (641)
Q Consensus 471 ~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~e 550 (641)
.+-+|+++|..+......+. |-+..++|+.|+...+..-+...+...++.+.++ .++.+.+.+ ++||+++++.
T Consensus 459 ~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~-~l~~~s~~~----~~DiR~~i~~ 531 (871)
T KOG1968|consen 459 SRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDD-VLEEISKLS----GGDIRQIIMQ 531 (871)
T ss_pred cCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcH-HHHHHHHhc----ccCHHHHHHH
Confidence 23456666655444432333 4445789999999999999988888777777666 477777765 5688888777
Q ss_pred HHHH
Q 006534 551 AALL 554 (641)
Q Consensus 551 Aa~~ 554 (641)
-...
T Consensus 532 lq~~ 535 (871)
T KOG1968|consen 532 LQFW 535 (871)
T ss_pred Hhhh
Confidence 5544
No 271
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00017 Score=85.75 Aligned_cols=177 Identities=24% Similarity=0.339 Sum_probs=115.3
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhc----------CCCeEEeehhhHHH--HHhhcchHHHHHHHHHHHh-cCCceEEEcc
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSASEFVE--LYVGMGASRVRDLFARAKK-EAPSIIFIDE 432 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~el----------g~pfi~vs~se~v~--~~vG~~~~~vr~lF~~A~~-~aP~ILfIDE 432 (641)
++-+|+|.||+|||.++.-+|+.. +..++.++...++. ++.|+.+.+++++.+.+.. ...-||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 678999999999999999999864 34566666654433 5678888999999998884 4455899999
Q ss_pred hhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC-----CCCChhhhCCCCcceEEEecCCCHHH
Q 006534 433 IDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS-----DVLDPALRRPGRFDRVVMVETPDKIG 507 (641)
Q Consensus 433 IDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~p-----d~LDpALlRpgRFd~~I~v~~Pd~~e 507 (641)
++-+...... .+ .....| +|..+- ...++-+|+||..- -.-||++-| ||+ .+.++.|+...
T Consensus 289 lh~lvg~g~~---~~----~~d~~n-lLkp~L---~rg~l~~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~ 354 (898)
T KOG1051|consen 289 LHWLVGSGSN---YG----AIDAAN-LLKPLL---ARGGLWCIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVEN 354 (898)
T ss_pred eeeeecCCCc---ch----HHHHHH-hhHHHH---hcCCeEEEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccc
Confidence 9999765432 11 122222 222222 23348889887532 245899999 998 67789999887
Q ss_pred HHHHHHHHHhcCCC----CCCCC--CCHHHHH--HhCCCCCHHHHHHHHHHHHHHHH
Q 006534 508 REAILKVHVSKKEL----PLAKD--IDLGDIA--SMTTGFTGADLANLVNEAALLAG 556 (641)
Q Consensus 508 R~~IL~~~l~~~~l----~l~~d--vdl~~LA--~~t~GfSgaDL~~Lv~eAa~~A~ 556 (641)
-..||.....+..+ ...+. +....++ ..+..+-+.-...++++|+....
T Consensus 355 ~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~ 411 (898)
T KOG1051|consen 355 LSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVK 411 (898)
T ss_pred hhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHHHHh
Confidence 77777776554211 11111 1112222 23344556667788888876553
No 272
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.77 E-value=9.3e-05 Score=70.62 Aligned_cols=43 Identities=23% Similarity=0.461 Sum_probs=34.3
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhh
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~vG 407 (641)
.++..|+|+|+||||||++|+++|..++.+|+.. +++.....|
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~--d~~~~~~~g 44 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT--DHLIEARAG 44 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHHHcC
Confidence 3567899999999999999999999999998854 444444333
No 273
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.76 E-value=0.00014 Score=73.41 Aligned_cols=39 Identities=28% Similarity=0.293 Sum_probs=31.3
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehh
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~s 399 (641)
|.+...-++++||||+|||++|..+|.+. +.+.++++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 45556668999999999999999998744 6777777766
No 274
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.75 E-value=7.3e-05 Score=67.24 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcC
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEAE 390 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg 390 (641)
|.|+||||+|||++|+.+|..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999987653
No 275
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.73 E-value=0.00017 Score=80.69 Aligned_cols=79 Identities=27% Similarity=0.402 Sum_probs=57.5
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHh------hc--------chHHHHHHHHHHHhc
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV------GM--------GASRVRDLFARAKKE 423 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~~v------G~--------~~~~vr~lF~~A~~~ 423 (641)
|..+..-+||+||||+|||+|+..+|... +.+.++++..+..+... |. .+..+.++++.....
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 44555668999999999999999998764 67888888765444321 11 123456677777777
Q ss_pred CCceEEEcchhhhhhh
Q 006534 424 APSIIFIDEIDAVAKS 439 (641)
Q Consensus 424 aP~ILfIDEIDaL~~~ 439 (641)
.|.+|+||+|..+...
T Consensus 156 ~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 156 KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCCEEEEechhhhccc
Confidence 8999999999998643
No 276
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.73 E-value=0.00014 Score=77.93 Aligned_cols=119 Identities=18% Similarity=0.138 Sum_probs=68.5
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHH----------------hhcchHHHHHHHHHHH
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY----------------VGMGASRVRDLFARAK 421 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~~----------------vG~~~~~vr~lF~~A~ 421 (641)
|.+..+-++|+||||||||+||..++.++ +.+.++++..+..+.. ....+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 44555678999999999999988776544 6677777665433210 0112222333333345
Q ss_pred hcCCceEEEcchhhhhhhcCCcccccc--hhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006534 422 KEAPSIIFIDEIDAVAKSRDGRFRIVS--NDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~--~~e~~~~LnqLL~emdg~~~~~~ViVIaATN 479 (641)
...+++|+||-+.++.+...-....+. .....+.+++++..+...-...++.+|.+..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 677899999999999754211000011 1122344556566555554455666666543
No 277
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.70 E-value=0.0002 Score=78.32 Aligned_cols=79 Identities=29% Similarity=0.434 Sum_probs=55.8
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHH------hhc--------chHHHHHHHHHHHhc
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY------VGM--------GASRVRDLFARAKKE 423 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~~------vG~--------~~~~vr~lF~~A~~~ 423 (641)
|..+..-+||+|+||+|||+|+..+|... +.+.++++..+-.+.. .|. .+..+..+++.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 44555668999999999999999998764 4577777765433221 111 123456677777778
Q ss_pred CCceEEEcchhhhhhh
Q 006534 424 APSIIFIDEIDAVAKS 439 (641)
Q Consensus 424 aP~ILfIDEIDaL~~~ 439 (641)
.|.+|+||+|..+...
T Consensus 158 ~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 158 KPDLVIIDSIQTVYSS 173 (372)
T ss_pred CCcEEEEcchHHhhcc
Confidence 8999999999998643
No 278
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.64 E-value=0.00036 Score=70.91 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=30.6
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehh
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~s 399 (641)
|.+.+..++++||||+|||+|+..++.+. +.+.++++..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 56667779999999999999999997653 6666666543
No 279
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.64 E-value=4e-05 Score=69.18 Aligned_cols=30 Identities=40% Similarity=0.697 Sum_probs=27.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEee
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~vs 397 (641)
|+|.||||+|||++|+.+|..+|++++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999998877554
No 280
>PRK13949 shikimate kinase; Provisional
Probab=97.64 E-value=0.00049 Score=67.03 Aligned_cols=31 Identities=45% Similarity=0.662 Sum_probs=29.0
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEee
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~vs 397 (641)
.|+|+||||+|||++++.+|+.++.+|+..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5999999999999999999999999998765
No 281
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.63 E-value=0.00078 Score=74.45 Aligned_cols=135 Identities=18% Similarity=0.178 Sum_probs=80.6
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccc
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI 446 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~ 446 (641)
-++|+||.+||||++++.+.....-.++.++..+........ ......+..+.....+.||||||+.+.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~--------- 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVP--------- 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCch---------
Confidence 799999999999999998888775546666655544322111 111222222222244699999998763
Q ss_pred cchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHH-------------HHH
Q 006534 447 VSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREA-------------ILK 513 (641)
Q Consensus 447 ~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~-------------IL~ 513 (641)
.+...+..|..... . .+++.+++...-....+-.-+||. ..+.+.+.+..|... .++
T Consensus 108 ----~W~~~lk~l~d~~~---~--~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~~~~~~~~~~~~~~f~ 177 (398)
T COG1373 108 ----DWERALKYLYDRGN---L--DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKLKGEEIEPSKLELLFE 177 (398)
T ss_pred ----hHHHHHHHHHcccc---c--eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhhcccccchhHHHHHHH
Confidence 24455555544321 1 344444443332333333446785 478888888888864 466
Q ss_pred HHHhcCCCC
Q 006534 514 VHVSKKELP 522 (641)
Q Consensus 514 ~~l~~~~l~ 522 (641)
.++..-+.|
T Consensus 178 ~Yl~~GGfP 186 (398)
T COG1373 178 KYLETGGFP 186 (398)
T ss_pred HHHHhCCCc
Confidence 676665555
No 282
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.61 E-value=0.00046 Score=69.16 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=30.0
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehh
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~s 399 (641)
|.....-++++|+||+|||+++..+|.+. +.+.++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 44455559999999999999999998764 5666666553
No 283
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.61 E-value=0.00032 Score=67.97 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.0
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhc
Q 006534 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAIA~el 389 (641)
.+..++++|+||+|||++++.+|..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 45569999999999999999999865
No 284
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.60 E-value=0.00024 Score=76.32 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=66.3
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHH-H---------------hhcchHHHHHHHHHHH
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-Y---------------VGMGASRVRDLFARAK 421 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~-~---------------vG~~~~~vr~lF~~A~ 421 (641)
|.+..+-++++||||||||+||-.++.++ +.+.++++..+-.+. + ....+..+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 34555568899999999999999887543 677777766432221 0 0111222222333345
Q ss_pred hcCCceEEEcchhhhhhhcCCcccccc--hhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006534 422 KEAPSIIFIDEIDAVAKSRDGRFRIVS--NDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~--~~e~~~~LnqLL~emdg~~~~~~ViVIaATN 479 (641)
...+++|+||-+-++.+...-....+. .....+.+.+.+..+...-...++.+|.+..
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 667899999999999753211000111 1122334455555554443445556665543
No 285
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.58 E-value=0.00047 Score=70.53 Aligned_cols=77 Identities=19% Similarity=0.285 Sum_probs=47.0
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhh----HHHHHh--hc-----------------------
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE----FVELYV--GM----------------------- 408 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se----~v~~~v--G~----------------------- 408 (641)
|.+...-++|+||||||||+++..++... |.+.++++..+ +..... |.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 34555679999999999999986554432 55666665432 211110 00
Q ss_pred --chHHHHHHHHHHHhcCCceEEEcchhhhh
Q 006534 409 --GASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (641)
Q Consensus 409 --~~~~vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (641)
....+..+...+....|.+++|||+-.+.
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 02233344455455578899999998764
No 286
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=97.58 E-value=2.1e-05 Score=69.48 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=23.9
Q ss_pred ccceechHHHHHHHHcCCccEEEEeCcEEE
Q 006534 179 TFVSVPYSDFLSKINSNQVAKVEVDGVHIM 208 (641)
Q Consensus 179 ~~~~~~ys~f~~~~~~~~v~~v~~~~~~~~ 208 (641)
...+++||+|+++|++|+|++|++.++.+.
T Consensus 26 ~~~~i~YS~F~~~l~~g~V~~V~i~~~~~~ 55 (110)
T PF06480_consen 26 QTKEISYSEFLQMLEKGNVKKVVIQNDKIT 55 (110)
T ss_dssp SSEE--HHHHHHTGGGT-EEEEEEETTTEE
T ss_pred CCcEECHHHHHHHHHcCCEEEEEEECCEEE
Confidence 456899999999999999999999987666
No 287
>PRK08118 topology modulation protein; Reviewed
Probab=97.57 E-value=0.00011 Score=71.39 Aligned_cols=32 Identities=28% Similarity=0.563 Sum_probs=29.8
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeeh
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~ 398 (641)
.|+++||||+|||+||+.++..++.|++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 48999999999999999999999999988764
No 288
>PHA00729 NTP-binding motif containing protein
Probab=97.56 E-value=0.00011 Score=75.00 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.9
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcC
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEAE 390 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~elg 390 (641)
..++|+|+||||||+||.++|.+++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3699999999999999999999875
No 289
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.55 E-value=0.00035 Score=79.18 Aligned_cols=226 Identities=22% Similarity=0.281 Sum_probs=120.3
Q ss_pred cccCChHHHHHHHHHHHH--hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcch
Q 006534 333 DVAGVDEAKEELEEIVEF--LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGA 410 (641)
Q Consensus 333 DV~G~~e~K~~L~eiv~~--L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~vG~~~ 410 (641)
.|.|+.++|..+.-.+-. -+++..- -..+---+|||.|.|||||+-+.|.++.-+..-++..--. ..-+|.++
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~k--hkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqG---ASavGLTa 524 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGK--HKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQG---ASAVGLTA 524 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCC--ceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCC---ccccceeE
Confidence 477888888776544322 2222110 0122335699999999999999999998776555543110 00112211
Q ss_pred HHHHH-----H------HHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHH-----HHhhhcCCCCCCcEEE
Q 006534 411 SRVRD-----L------FARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ-----LLTEMDGFDSNSAVIV 474 (641)
Q Consensus 411 ~~vr~-----l------F~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Lnq-----LL~emdg~~~~~~ViV 474 (641)
...++ + +-.|. ..|.+|||+|.+....- ...++..+|.--. +.+.+ +....|
T Consensus 525 ~v~KdPvtrEWTLEaGALVLAD---kGvClIDEFDKMndqDR----tSIHEAMEQQSISISKAGIVtsL-----qArctv 592 (854)
T KOG0477|consen 525 YVRKDPVTREWTLEAGALVLAD---KGVCLIDEFDKMNDQDR----TSIHEAMEQQSISISKAGIVTSL-----QARCTV 592 (854)
T ss_pred EEeeCCccceeeeccCeEEEcc---CceEEeehhhhhccccc----chHHHHHHhcchhhhhhhHHHHH-----Hhhhhh
Confidence 11111 1 11122 23899999999864321 1223333321111 11111 123578
Q ss_pred EEecCCC-----------C--CCChhhhCCCCcceEEEecC---CCHHHHHH--HHHHHHhcCC----------------
Q 006534 475 LGATNRS-----------D--VLDPALRRPGRFDRVVMVET---PDKIGREA--ILKVHVSKKE---------------- 520 (641)
Q Consensus 475 IaATN~p-----------d--~LDpALlRpgRFd~~I~v~~---Pd~~eR~~--IL~~~l~~~~---------------- 520 (641)
|||+|+. + .|-..+++ |||-.-.+.. |-.+++.. ++..|.+...
T Consensus 593 IAAanPigGRY~~s~tFaqNV~ltePIlS--RFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~ 670 (854)
T KOG0477|consen 593 IAAANPIGGRYNPSLTFAQNVDLTEPILS--RFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPAR 670 (854)
T ss_pred heecCCCCCccCCccchhhccccccchhh--hcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccc
Confidence 8999872 1 44456677 9996555542 33333332 3333332110
Q ss_pred --------------------CCCCCCCCHHHHHH---------hCCC---CCHHHHHHHHHHHHHHHHhcCCccccHHHH
Q 006534 521 --------------------LPLAKDIDLGDIAS---------MTTG---FTGADLANLVNEAALLAGRLNKVVVEKIDF 568 (641)
Q Consensus 521 --------------------l~l~~dvdl~~LA~---------~t~G---fSgaDL~~Lv~eAa~~A~r~~~~~It~~d~ 568 (641)
.|--.+.|.+.++. ...| .+.+-|+.++.-+...|...-+..|+.+|+
T Consensus 671 v~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~ 750 (854)
T KOG0477|consen 671 VEPIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDV 750 (854)
T ss_pred cccChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHH
Confidence 01111233333332 1112 255888888888888887778889999999
Q ss_pred HHHHHHHhc
Q 006534 569 IHAVERSIA 577 (641)
Q Consensus 569 ~~Al~rvi~ 577 (641)
..|+.-++.
T Consensus 751 ~~AI~v~ld 759 (854)
T KOG0477|consen 751 DMAIRVMLD 759 (854)
T ss_pred HHHHHHHHH
Confidence 988875543
No 290
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.53 E-value=0.00012 Score=72.66 Aligned_cols=123 Identities=18% Similarity=0.170 Sum_probs=59.6
Q ss_pred eEEEcCCCCcHHHHHHHH-HHh---cCCCeEEeehhhHH-HHHhh---cchH-------------HHHHHHHHHHhcCCc
Q 006534 368 VLLVGLPGTGKTLLAKAV-AGE---AEVPFISCSASEFV-ELYVG---MGAS-------------RVRDLFARAKKEAPS 426 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAI-A~e---lg~pfi~vs~se~v-~~~vG---~~~~-------------~vr~lF~~A~~~aP~ 426 (641)
.+++|.||+|||+.|-.. ... .|.+++. +...+. +.... .... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 588999999999988655 433 3666665 444221 11000 0000 001111111111457
Q ss_pred eEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCC
Q 006534 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETP 503 (641)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~P 503 (641)
+|+|||++.+.+.+... .......+ +++.+.. ..++-||.+|..+..+|+.+++ ..+.++.+..+
T Consensus 82 liviDEa~~~~~~r~~~-----~~~~~~~~-~~l~~hR----h~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWK-----GKKVPEII-EFLAQHR----HYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T------T----HHH-HGGGGCC----CTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred EEEEECChhhcCCCccc-----cccchHHH-HHHHHhC----cCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 99999999998877531 01112333 4444432 4567888899999999999986 77777777655
No 291
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.52 E-value=0.00033 Score=73.43 Aligned_cols=194 Identities=20% Similarity=0.227 Sum_probs=102.2
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHH------hcCCCeEEeehhhHHHHH-hhcchHHHHHHHHHHHh--------cCCc
Q 006534 362 ARPPRGVLLVGLPGTGKTLLAKAVAG------EAEVPFISCSASEFVELY-VGMGASRVRDLFARAKK--------EAPS 426 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAIA~------elg~pfi~vs~se~v~~~-vG~~~~~vr~lF~~A~~--------~aP~ 426 (641)
.+....+||.||.|.||+.||+.|-. .+..+|+.++|..+...- +..--..++..|.-|+. ....
T Consensus 205 ~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 205 IRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred hhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCc
Confidence 44556799999999999999999854 457899999998663210 00001112222322221 1234
Q ss_pred eEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcC--C-------CCCCcEEEEEecCCC-------CCCChhhhC
Q 006534 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG--F-------DSNSAVIVLGATNRS-------DVLDPALRR 490 (641)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg--~-------~~~~~ViVIaATN~p-------d~LDpALlR 490 (641)
++|+|||..|+...+ . .||..++. | +-...+-+|+.|.+. ...-+.|.-
T Consensus 285 mlfldeigelgadeq-----------a----mllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~a 349 (531)
T COG4650 285 MLFLDEIGELGADEQ-----------A----MLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYA 349 (531)
T ss_pred eEehHhhhhcCccHH-----------H----HHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHH
Confidence 999999988864332 1 23333331 1 112345667666542 122223322
Q ss_pred CCCcceEEEecCCCHHHHHHH--------HHHHHhcCCCC--CCCCCCHHHHHH-----hCCCCCHHHHHHHHHHHHHHH
Q 006534 491 PGRFDRVVMVETPDKIGREAI--------LKVHVSKKELP--LAKDIDLGDIAS-----MTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 491 pgRFd~~I~v~~Pd~~eR~~I--------L~~~l~~~~l~--l~~dvdl~~LA~-----~t~GfSgaDL~~Lv~eAa~~A 555 (641)
|+. ...+.+|...+|.+= |..|....+-. +..+.--..++- .+..-+-++|..-+.+.+.+|
T Consensus 350 --rin-lwtf~lpgl~qr~ediepnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatla 426 (531)
T COG4650 350 --RIN-LWTFTLPGLRQRQEDIEPNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATLA 426 (531)
T ss_pred --hhh-eeeeeccccccCccccCCCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHHh
Confidence 332 456777877777652 33444332211 111111111221 111224477777777766666
Q ss_pred HhcCCccccHHHHHHHHHHHh
Q 006534 556 GRLNKVVVEKIDFIHAVERSI 576 (641)
Q Consensus 556 ~r~~~~~It~~d~~~Al~rvi 576 (641)
+...||.+.+++-+.+..
T Consensus 427 ---d~grit~~~ve~ei~rlr 444 (531)
T COG4650 427 ---DSGRITLDVVEDEINRLR 444 (531)
T ss_pred ---cCCceeHHHHHHHHHHHH
Confidence 455677777776666543
No 292
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.52 E-value=0.00029 Score=65.23 Aligned_cols=37 Identities=32% Similarity=0.474 Sum_probs=30.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHh
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~v 406 (641)
|++.||||+|||++|+.++..++ ...++.+++.....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~ 38 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLA 38 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHc
Confidence 78999999999999999999988 55567676665443
No 293
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.51 E-value=0.0003 Score=73.85 Aligned_cols=113 Identities=22% Similarity=0.383 Sum_probs=66.0
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcC----------CCeEEee-hhhHHHHHhhc-------------chHHHHHHHHHHH
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEAE----------VPFISCS-ASEFVELYVGM-------------GASRVRDLFARAK 421 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~elg----------~pfi~vs-~se~v~~~vG~-------------~~~~vr~lF~~A~ 421 (641)
.+++|.||+|+|||+|.+++++... .++..++ ..++...+.+. ...+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 5799999999999999999999763 2222222 22332221111 1122345666777
Q ss_pred hcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChh--------hhCCCC
Q 006534 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPA--------LRRPGR 493 (641)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpA--------LlRpgR 493 (641)
...|.+|++||+.. ...+..++..+. .+..+|++|..++ +... |+..+-
T Consensus 192 ~~~P~villDE~~~-----------------~e~~~~l~~~~~-----~G~~vI~ttH~~~-~~~~~~r~~~~~l~~~~~ 248 (270)
T TIGR02858 192 SMSPDVIVVDEIGR-----------------EEDVEALLEALH-----AGVSIIATAHGRD-VEDLYKRPVFKELIENEA 248 (270)
T ss_pred hCCCCEEEEeCCCc-----------------HHHHHHHHHHHh-----CCCEEEEEechhH-HHHHHhChHHHHHHhcCc
Confidence 78999999999621 122344444442 2456777887542 2222 233445
Q ss_pred cceEEEec
Q 006534 494 FDRVVMVE 501 (641)
Q Consensus 494 Fd~~I~v~ 501 (641)
|++.+.+.
T Consensus 249 ~~r~i~L~ 256 (270)
T TIGR02858 249 FERYVVLS 256 (270)
T ss_pred eEEEEEEe
Confidence 77776664
No 294
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.50 E-value=0.00071 Score=60.29 Aligned_cols=24 Identities=46% Similarity=0.450 Sum_probs=20.9
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhc
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~el 389 (641)
++++++||+|+|||+++-.++.++
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999998887765
No 295
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.50 E-value=0.0012 Score=73.90 Aligned_cols=194 Identities=18% Similarity=0.244 Sum_probs=97.8
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH-------HH--------hhc-----chHHHHHHHHH
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE-------LY--------VGM-----GASRVRDLFAR 419 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~-------~~--------vG~-----~~~~vr~lF~~ 419 (641)
..|..++|+|++|+|||+++..+|..+ |.....++++.+.. .+ .+. ....+++.++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 467889999999999999999998765 55555555543211 10 110 11223444444
Q ss_pred HHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhh--CCCCcceE
Q 006534 420 AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALR--RPGRFDRV 497 (641)
Q Consensus 420 A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALl--RpgRFd~~ 497 (641)
+... .+|+||..-.+.. + +..+.+|-...+-.....-++|+-++...+.++.+-. ..-.++ .
T Consensus 173 ~~~~--DvVIIDTAGr~~~----------d---~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~~~l~i~-g 236 (437)
T PRK00771 173 FKKA--DVIIVDTAGRHAL----------E---EDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIG-G 236 (437)
T ss_pred hhcC--CEEEEECCCcccc----------h---HHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHHhcCCCC-E
Confidence 4443 6899998754421 1 1222222222222233344555655554333332211 100122 2
Q ss_pred EEecCCCHHHHHH-HHHHHHhcCCCC---------C--CCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH---------HH
Q 006534 498 VMVETPDKIGREA-ILKVHVSKKELP---------L--AKDIDLGDIASMTTGFTGADLANLVNEAALL---------AG 556 (641)
Q Consensus 498 I~v~~Pd~~eR~~-IL~~~l~~~~l~---------l--~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~---------A~ 556 (641)
+-+...|...|-. +|..... .+.| + -+..+.+.++.+.-|+ +|+..+++.|... +.
T Consensus 237 vIlTKlD~~a~~G~~ls~~~~-~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilgm--gd~~~l~e~~~~~~~~~~~~~~~~ 313 (437)
T PRK00771 237 IIITKLDGTAKGGGALSAVAE-TGAPIKFIGTGEKIDDLERFDPDRFISRLLGM--GDLESLLEKVEEALDEEEEEKDVE 313 (437)
T ss_pred EEEecccCCCcccHHHHHHHH-HCcCEEEEecCCCcccCCcCCHHHHHHHHhCC--CChHHHHHHHHHhhhHHHHHHHHH
Confidence 3444555544443 3332221 1222 1 1123567777776553 5777777765432 11
Q ss_pred hcCCccccHHHHHHHHHHH
Q 006534 557 RLNKVVVEKIDFIHAVERS 575 (641)
Q Consensus 557 r~~~~~It~~d~~~Al~rv 575 (641)
+-.+...+.+||.+-++.+
T Consensus 314 ~~~~~~f~l~d~~~q~~~~ 332 (437)
T PRK00771 314 KMMKGKFTLKDMYKQLEAM 332 (437)
T ss_pred HHHcCCcCHHHHHHHHHHH
Confidence 2223456788888777654
No 296
>PRK06762 hypothetical protein; Provisional
Probab=97.48 E-value=0.00043 Score=66.35 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=33.4
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~ 404 (641)
|.-++|+|+||+|||++|+.++..++..++.++.+.+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~ 41 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRD 41 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHH
Confidence 5678999999999999999999998666777777766653
No 297
>PRK07261 topology modulation protein; Provisional
Probab=97.46 E-value=0.00018 Score=70.10 Aligned_cols=31 Identities=23% Similarity=0.565 Sum_probs=28.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEeeh
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~vs~ 398 (641)
|+++|+||+|||+||+.++...+.|++..+.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 8999999999999999999999999887754
No 298
>PF14516 AAA_35: AAA-like domain
Probab=97.44 E-value=0.007 Score=65.24 Aligned_cols=165 Identities=13% Similarity=0.117 Sum_probs=89.6
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH-----------HHh-----------------h---cch
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE-----------LYV-----------------G---MGA 410 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~-----------~~v-----------------G---~~~ 410 (641)
+.-+.+.||..+|||+|...+...+ |...+.+++..+-. .+. . ...
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 4468999999999999999987654 67777776554311 000 0 011
Q ss_pred HHHHHHHHHH---HhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChh
Q 006534 411 SRVRDLFARA---KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPA 487 (641)
Q Consensus 411 ~~vr~lF~~A---~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpA 487 (641)
......|+.. ....|-||+|||+|.+..... ..++.-..+..+...-.....-..+.+|.+......+...
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~------~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~ 184 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ------IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILD 184 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc------hHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccC
Confidence 2233344432 224677999999999974321 1111122222222211111111233333333222222222
Q ss_pred h-hCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCC
Q 006534 488 L-RRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (641)
Q Consensus 488 L-lRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfS 540 (641)
. .+|-.+...+.++..+.++-..+++.+- ....... ++.|-..|.|..
T Consensus 185 ~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~----~~~~~~~-~~~l~~~tgGhP 233 (331)
T PF14516_consen 185 INQSPFNIGQPIELPDFTPEEVQELAQRYG----LEFSQEQ-LEQLMDWTGGHP 233 (331)
T ss_pred CCCCCcccccceeCCCCCHHHHHHHHHhhh----ccCCHHH-HHHHHHHHCCCH
Confidence 2 3444455677788888888888877763 3344443 888888888843
No 299
>PRK14532 adenylate kinase; Provisional
Probab=97.42 E-value=0.00064 Score=66.57 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=29.6
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~ 404 (641)
.++|.||||+|||++|+.+|...|.+++ +..+++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHH
Confidence 4899999999999999999999987665 45555554
No 300
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.42 E-value=0.00016 Score=82.40 Aligned_cols=63 Identities=25% Similarity=0.358 Sum_probs=44.2
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-CCCeEEeeh
Q 006534 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSA 398 (641)
Q Consensus 330 tf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el-g~pfi~vs~ 398 (641)
-|+|+.|++++++++-+.+.. .- ..++ ...+-++|.||||+|||+||++||.-+ ..|++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~---Aa--~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRH---AA--QGLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHH---HH--HhcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 488999999998876655521 11 1111 233578899999999999999999865 346666544
No 301
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.0011 Score=72.99 Aligned_cols=165 Identities=13% Similarity=0.181 Sum_probs=86.4
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhc-------CCCeEEeehhhHH-------HHH---------hhcchHHHHHHHHH
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSASEFV-------ELY---------VGMGASRVRDLFAR 419 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~el-------g~pfi~vs~se~v-------~~~---------vG~~~~~vr~lF~~ 419 (641)
..|..++|+||+|+|||+++..+|..+ +..+..++++.+. ..| .......+...+..
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 346789999999999999999998754 2333333333221 111 11122333333333
Q ss_pred HHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCC-CcEEEEEecCCCCCCChhhhCC--CCcce
Q 006534 420 AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN-SAVIVLGATNRSDVLDPALRRP--GRFDR 496 (641)
Q Consensus 420 A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~-~~ViVIaATN~pd~LDpALlRp--gRFd~ 496 (641)
. ....+|+||++..... + ...+.++...++..... ..++|+.+|.....+...+.+- -.++
T Consensus 252 ~--~~~DlVLIDTaGr~~~----------~---~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~- 315 (388)
T PRK12723 252 S--KDFDLVLVDTIGKSPK----------D---FMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYK- 315 (388)
T ss_pred h--CCCCEEEEcCCCCCcc----------C---HHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCC-
Confidence 3 3456999999865531 1 11234444444433323 4678888887776666554331 1233
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCC---------CCCCC---CHHHHHHhCCCCCHHH
Q 006534 497 VVMVETPDKIGREAILKVHVSKKELP---------LAKDI---DLGDIASMTTGFTGAD 543 (641)
Q Consensus 497 ~I~v~~Pd~~eR~~IL~~~l~~~~l~---------l~~dv---dl~~LA~~t~GfSgaD 543 (641)
.+-+...|...+...+-..+...++| +++|+ +...+++...||+-++
T Consensus 316 ~~I~TKlDet~~~G~~l~~~~~~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g~~~~~ 374 (388)
T PRK12723 316 TVIFTKLDETTCVGNLISLIYEMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYRISD 374 (388)
T ss_pred EEEEEeccCCCcchHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHhcCCCccc
Confidence 45566666655544332222222222 22222 3455666666666543
No 302
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.40 E-value=0.00034 Score=76.56 Aligned_cols=111 Identities=18% Similarity=0.336 Sum_probs=62.1
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhc----C-CCeEEeehhhH-------HHH---Hhhc------chHHHHHHHHHHH
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA----E-VPFISCSASEF-------VEL---YVGM------GASRVRDLFARAK 421 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~el----g-~pfi~vs~se~-------v~~---~vG~------~~~~vr~lF~~A~ 421 (641)
..+..++|+||+|+|||+++..+|..+ | ..+..+..+.+ +.. ..|. ....+...+..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-- 212 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-- 212 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH--
Confidence 445679999999999999999999763 3 23444444332 111 1111 11122222222
Q ss_pred hcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCC-CCcEEEEEecCCCCCCChhhh
Q 006534 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIVLGATNRSDVLDPALR 489 (641)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~-~~~ViVIaATN~pd~LDpALl 489 (641)
....++|+||...... . ...+.+.+..+..... ...++|+.+|+..+.++..+.
T Consensus 213 l~~~DlVLIDTaG~~~----------~----d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQ----------R----DRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred hcCCCEEEEcCCCCCc----------c----cHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 2345799999984321 1 1123334444433332 345788888888877765543
No 303
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.38 E-value=0.0016 Score=67.51 Aligned_cols=76 Identities=20% Similarity=0.281 Sum_probs=45.5
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCCC------eEEeeh------hhHHHHH--------hhcc-hHHH---HHHHHHH
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVP------FISCSA------SEFVELY--------VGMG-ASRV---RDLFARA 420 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~elg~p------fi~vs~------se~v~~~--------vG~~-~~~v---r~lF~~A 420 (641)
..-++|.||+|+|||+|++.+++..... ++.+.. .+|.... .+.. ..++ ..+...|
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 3459999999999999999999877432 333222 2333322 1111 1111 1233333
Q ss_pred H----hcCCceEEEcchhhhhhhc
Q 006534 421 K----KEAPSIIFIDEIDAVAKSR 440 (641)
Q Consensus 421 ~----~~aP~ILfIDEIDaL~~~r 440 (641)
. .+...+|||||+..+....
T Consensus 96 ~~~~~~G~~vll~iDei~r~a~a~ 119 (249)
T cd01128 96 KRLVEHGKDVVILLDSITRLARAY 119 (249)
T ss_pred HHHHHCCCCEEEEEECHHHhhhhh
Confidence 2 2456799999999987543
No 304
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.37 E-value=0.0038 Score=66.02 Aligned_cols=78 Identities=15% Similarity=0.205 Sum_probs=48.7
Q ss_pred CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCCh----------------h
Q 006534 424 APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDP----------------A 487 (641)
Q Consensus 424 aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDp----------------A 487 (641)
.+-||||||+|.+.+.. +.+++..+..+-...++++|.+.++. .+.. .
T Consensus 172 ~~iViiIDdLDR~~~~~---------------i~~~l~~ik~~~~~~~i~~Il~~D~~-~l~~ai~~~~~~~~~~~~~~~ 235 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSPEE---------------IVELLEAIKLLLDFPNIIFILAFDPE-ILEKAIEKNYGEGFDEIDGRE 235 (325)
T ss_pred ceEEEEEcchhcCCcHH---------------HHHHHHHHHHhcCCCCeEEEEEecHH-HHHHHHHhhcCcccccccHHH
Confidence 35599999999984321 23344444434344678887777642 1111 2
Q ss_pred hhCCCCcceEEEecCCCHHHHHHHHHHHHhc
Q 006534 488 LRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (641)
Q Consensus 488 LlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~ 518 (641)
.+.. -|+..+.+|.|+..+...++...+.+
T Consensus 236 yLeK-iiq~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 236 YLEK-IIQVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred HHHh-hcCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 2221 46778899999998888888877544
No 305
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.36 E-value=0.00064 Score=83.42 Aligned_cols=137 Identities=28% Similarity=0.353 Sum_probs=93.1
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH---HH----hhc--chHHHHH-HHHHHHhcCCceEEEcchh
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE---LY----VGM--GASRVRD-LFARAKKEAPSIIFIDEID 434 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~---~~----vG~--~~~~vr~-lF~~A~~~aP~ILfIDEID 434 (641)
.+++||.|.||+|||.|+.|+|++.|-.++.++.++-.+ .+ .++ |+-+.++ -|-.|.+.+. -|++||+.
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~-WVlLDEiN 1621 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGG-WVLLDEIN 1621 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCC-EEEeehhh
Confidence 467999999999999999999999999999999875433 21 111 3333333 2444444433 89999996
Q ss_pred hhhhhcCCcccccchhHHHHHHHHHHhh--------hc-CCCCCCcEEEEEecCCC------CCCChhhhCCCCcceEEE
Q 006534 435 AVAKSRDGRFRIVSNDEREQTLNQLLTE--------MD-GFDSNSAVIVLGATNRS------DVLDPALRRPGRFDRVVM 499 (641)
Q Consensus 435 aL~~~r~~~~~~~~~~e~~~~LnqLL~e--------md-g~~~~~~ViVIaATN~p------d~LDpALlRpgRFd~~I~ 499 (641)
.... ..-.-||..|.. +| .|.-.+++.|.||-|+. ..||..++. ||. +|.
T Consensus 1622 LaSQ------------SVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV~ 1686 (4600)
T COG5271 1622 LASQ------------SVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VVK 1686 (4600)
T ss_pred hhHH------------HHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eEE
Confidence 4321 112234444432 22 23445678999999875 378999988 997 888
Q ss_pred ecCCCHHHHHHHHHHHHh
Q 006534 500 VETPDKIGREAILKVHVS 517 (641)
Q Consensus 500 v~~Pd~~eR~~IL~~~l~ 517 (641)
++....++...|......
T Consensus 1687 ~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1687 MDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred ecccccchHHHHHHhhCC
Confidence 998888887777766553
No 306
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.36 E-value=0.00081 Score=71.86 Aligned_cols=160 Identities=20% Similarity=0.343 Sum_probs=95.0
Q ss_pred cccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHH---HHhcCCCeEEeehhhHHHH----
Q 006534 333 DVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAV---AGEAEVPFISCSASEFVEL---- 404 (641)
Q Consensus 333 DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAI---A~elg~pfi~vs~se~v~~---- 404 (641)
.+.|..+..+.+.+++.. ... .....|++.||.|+|||++.... +++.|-.|+.|....++..
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~---------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILH---------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHh---------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 366777777777777765 111 22457999999999999976654 3366777777654433221
Q ss_pred -----------------HhhcchHHHHHHHHHHHh-----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhh
Q 006534 405 -----------------YVGMGASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (641)
Q Consensus 405 -----------------~vG~~~~~vr~lF~~A~~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~e 462 (641)
..|.....+..++...+. ..+.|.++||+|.+++.. +.-.+..|+..
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~-----------rQtllYnlfDi 164 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS-----------RQTLLYNLFDI 164 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch-----------hhHHHHHHHHH
Confidence 122233334444443332 123244467899876421 11233334333
Q ss_pred hcCCCCCCcEEEEEecCCCCCC---ChhhhCCCCcceE-EEecC-CCHHHHHHHHHHHH
Q 006534 463 MDGFDSNSAVIVLGATNRSDVL---DPALRRPGRFDRV-VMVET-PDKIGREAILKVHV 516 (641)
Q Consensus 463 mdg~~~~~~ViVIaATN~pd~L---DpALlRpgRFd~~-I~v~~-Pd~~eR~~IL~~~l 516 (641)
-+ ....++-||+.|.+.+.+ ...+.+ ||... |++.+ .+..+-.++++..+
T Consensus 165 sq--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 165 SQ--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred Hh--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 22 234578899999887544 566677 99654 66644 35788888888877
No 307
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.36 E-value=0.00077 Score=67.46 Aligned_cols=67 Identities=24% Similarity=0.488 Sum_probs=42.2
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhc-----CCCe-------------EEeehhhHHH----HHhhcchHHHHHHHHHHHhc
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEA-----EVPF-------------ISCSASEFVE----LYVGMGASRVRDLFARAKKE 423 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~el-----g~pf-------------i~vs~se~v~----~~vG~~~~~vr~lF~~A~~~ 423 (641)
+-++|.||+|+|||+|.|.+++.. |.++ ..++..+-+. .+. ....++.++++.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~-~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFY-AELRRLKEIVEKAKKG 104 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHH-HHHHHHHHHHHhccCC
Confidence 568999999999999999998632 4322 1111111111 111 1124566777766555
Q ss_pred CCceEEEcch
Q 006534 424 APSIIFIDEI 433 (641)
Q Consensus 424 aP~ILfIDEI 433 (641)
.|.++++||.
T Consensus 105 ~p~llllDEp 114 (199)
T cd03283 105 EPVLFLLDEI 114 (199)
T ss_pred CCeEEEEecc
Confidence 7899999996
No 308
>PRK10536 hypothetical protein; Provisional
Probab=97.36 E-value=0.001 Score=69.22 Aligned_cols=45 Identities=27% Similarity=0.358 Sum_probs=31.8
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHh
Q 006534 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (641)
Q Consensus 330 tf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~e 388 (641)
.+.-+.+.......+...+. +. .-+++.||+|||||+||.++|.+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~---~~-----------~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIE---SK-----------QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCccccCCCHHHHHHHHHHh---cC-----------CeEEEECCCCCCHHHHHHHHHHH
Confidence 34456666666655555442 21 25999999999999999999885
No 309
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.35 E-value=0.00055 Score=68.76 Aligned_cols=116 Identities=20% Similarity=0.170 Sum_probs=65.6
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---C------CCeEEeehhhH------HHHHhh-----------------c
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---E------VPFISCSASEF------VELYVG-----------------M 408 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~el---g------~pfi~vs~se~------v~~~vG-----------------~ 408 (641)
|.....-+.|+||||+|||+|+..+|... + ...++++..+- ...... .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 45556678999999999999999998753 2 45566665431 110000 0
Q ss_pred chHHHHHHHHHH----HhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEec
Q 006534 409 GASRVRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (641)
Q Consensus 409 ~~~~vr~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaAT 478 (641)
....+...+... ....+++|+||-|..+....... .....++.+.+.+++..|..+....++.||.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~--~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tn 166 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIG--RGMLAERARLLSQALRKLLRLADKFNVAVVFTN 166 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcC--CchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEE
Confidence 111222222222 24567899999999886532110 011234445666666666655444555555554
No 310
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.33 E-value=0.00076 Score=68.15 Aligned_cols=116 Identities=20% Similarity=0.213 Sum_probs=64.7
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---------CCCeEEeehhhH------HHHHh--h---------------c
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEF------VELYV--G---------------M 408 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~el---------g~pfi~vs~se~------v~~~v--G---------------~ 408 (641)
|.+...-+.|+||||||||+|+..++... +...++++..+- ..... + .
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 45556668999999999999999998553 245666665431 11000 0 0
Q ss_pred chHHHHHHH----HHHHhc-CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEec
Q 006534 409 GASRVRDLF----ARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (641)
Q Consensus 409 ~~~~vr~lF----~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaAT 478 (641)
+...+.+++ ...... .+++|+||-+.++....... .....++.+.+.+++..+..+....++.|+.+.
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn 167 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDG--RGELAERQQHLAKLLRTLKRLADEFNVAVVITN 167 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence 011112222 222344 78899999999886421110 011234445566666666555444455666554
No 311
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.32 E-value=0.00058 Score=66.96 Aligned_cols=40 Identities=30% Similarity=0.612 Sum_probs=33.1
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhh
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~vG 407 (641)
+.+.|.|++|+|||++.+++|+.++.+|+-. +..++...|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~--D~~Ie~~~g 42 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDT--DQEIEKRTG 42 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccc--hHHHHHHHC
Confidence 4699999999999999999999999999865 445554444
No 312
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.32 E-value=0.00089 Score=73.48 Aligned_cols=73 Identities=25% Similarity=0.317 Sum_probs=44.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcC-----CCeEEeehhhH-------HHHH---------hhcchHHHH---HHHHHHHh-
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSASEF-------VELY---------VGMGASRVR---DLFARAKK- 422 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg-----~pfi~vs~se~-------v~~~---------vG~~~~~vr---~lF~~A~~- 422 (641)
.||+||||+|||+|++.|++... +..+.+-..+. .... ......+++ .+++.|+.
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998663 33222222221 1111 111223333 33444432
Q ss_pred ---cCCceEEEcchhhhhhhc
Q 006534 423 ---EAPSIIFIDEIDAVAKSR 440 (641)
Q Consensus 423 ---~aP~ILfIDEIDaL~~~r 440 (641)
+...+||||||+.+....
T Consensus 252 ~e~G~dVlL~iDsItR~arAq 272 (416)
T PRK09376 252 VEHGKDVVILLDSITRLARAY 272 (416)
T ss_pred HHcCCCEEEEEEChHHHHHHH
Confidence 356699999999997644
No 313
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.31 E-value=0.0016 Score=71.05 Aligned_cols=28 Identities=36% Similarity=0.617 Sum_probs=24.4
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhc
Q 006534 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAIA~el 389 (641)
..+|+|++|||.-|||||+|.-.+-..+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 4579999999999999999999887554
No 314
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.30 E-value=0.0024 Score=65.39 Aligned_cols=39 Identities=31% Similarity=0.388 Sum_probs=30.2
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHh---cCCCeEEeehh
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSAS 399 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~e---lg~pfi~vs~s 399 (641)
|..+...+|++||||||||+||..++.+ .|-+.++++..
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 5666778999999999999999877654 36677666544
No 315
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.29 E-value=0.0012 Score=65.94 Aligned_cols=98 Identities=27% Similarity=0.367 Sum_probs=52.2
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH----HHhhcchHHHHHHHHHHH---------hcCCceEE
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE----LYVGMGASRVRDLFARAK---------KEAPSIIF 429 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~----~~vG~~~~~vr~lF~~A~---------~~aP~ILf 429 (641)
+-.+|.||||||||++++.++..+ +..++.+....-.. ...+.....+..++.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 357889999999999999987543 66666665432211 111222233333322211 12236999
Q ss_pred EcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCC
Q 006534 430 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (641)
Q Consensus 430 IDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~ 480 (641)
|||+..+.. ..+..|+..+.. ...++++++-.+.
T Consensus 99 VDEasmv~~---------------~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEASMVDS---------------RQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp ESSGGG-BH---------------HHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred EecccccCH---------------HHHHHHHHHHHh--cCCEEEEECCcch
Confidence 999977642 234555655543 2346777776664
No 316
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.29 E-value=0.0013 Score=66.27 Aligned_cols=97 Identities=24% Similarity=0.262 Sum_probs=57.2
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc----CCCeEEeehhhH----HHH----------Hhh---------------
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEF----VEL----------YVG--------------- 407 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~el----g~pfi~vs~se~----v~~----------~vG--------------- 407 (641)
|.+.+..+|+.||||||||+|+..++.+. |-+.++++..+- .+. +..
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 56667779999999999999999876433 777777764322 111 000
Q ss_pred ----cchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhc
Q 006534 408 ----MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (641)
Q Consensus 408 ----~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd 464 (641)
.....+..+.+......+++++||-+..+. ... ........+..|...+.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~~------~~~~~r~~l~~l~~~l~ 148 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LYD------DPEELRRFLRALIKFLK 148 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TSS------SGGGHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hcC------CHHHHHHHHHHHHHHHH
Confidence 001122333344455678999999999992 221 22334455666666654
No 317
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.29 E-value=0.00044 Score=64.83 Aligned_cols=39 Identities=31% Similarity=0.659 Sum_probs=31.5
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhh
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~vG 407 (641)
.|+|+|+||+|||++|+.+|..++.+++..+ .+.....+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d--~~~~~~~~ 39 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD--ELIEQRAG 39 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch--HHHHHHcC
Confidence 3899999999999999999999999988554 45444433
No 318
>PRK04296 thymidine kinase; Provisional
Probab=97.28 E-value=0.0009 Score=66.34 Aligned_cols=70 Identities=17% Similarity=0.142 Sum_probs=41.3
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeeh--h--hHHH---HHhhcc-----hHHHHHHHHHHH--hcCCceEE
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA--S--EFVE---LYVGMG-----ASRVRDLFARAK--KEAPSIIF 429 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~--s--e~v~---~~vG~~-----~~~vr~lF~~A~--~~aP~ILf 429 (641)
-+|++||||+|||+++..++.++ +...+.+.. . .... ...|.. .....+++..+. ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998888765 555554533 1 1100 001110 112344444443 24567999
Q ss_pred Ecchhhh
Q 006534 430 IDEIDAV 436 (641)
Q Consensus 430 IDEIDaL 436 (641)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999655
No 319
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.28 E-value=0.0015 Score=73.45 Aligned_cols=78 Identities=26% Similarity=0.385 Sum_probs=54.6
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHh------hc--------chHHHHHHHHHHHhc
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV------GM--------GASRVRDLFARAKKE 423 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~~v------G~--------~~~~vr~lF~~A~~~ 423 (641)
|..+..-+||+|+||+|||+|+..+|... +.+.++++..+-.+... |. .+..+.++...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 44555668999999999999999997754 45777777654433211 11 122345566666777
Q ss_pred CCceEEEcchhhhhh
Q 006534 424 APSIIFIDEIDAVAK 438 (641)
Q Consensus 424 aP~ILfIDEIDaL~~ 438 (641)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999999854
No 320
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.27 E-value=0.0066 Score=64.21 Aligned_cols=96 Identities=25% Similarity=0.362 Sum_probs=60.5
Q ss_pred cccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC-----CCeEE-------eehh
Q 006534 333 DVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFIS-------CSAS 399 (641)
Q Consensus 333 DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg-----~pfi~-------vs~s 399 (641)
.+.|+.-+++.+-..+.. +.++. .+.|--+=|+|++||||..+++.||+.+. -+|+. +--.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 488999999887766655 55442 24455556889999999999999999752 12211 1111
Q ss_pred hHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhh
Q 006534 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (641)
Q Consensus 400 e~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (641)
.-++.|..+-...+++. +.....++.++||+|.|.
T Consensus 157 ~~ie~Yk~eL~~~v~~~---v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGT---VQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHHHHHHHHHH---HHhcCCceEEechhhhcC
Confidence 22333333333344443 345556699999999985
No 321
>PTZ00202 tuzin; Provisional
Probab=97.27 E-value=0.017 Score=64.51 Aligned_cols=62 Identities=16% Similarity=0.332 Sum_probs=49.8
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehh
Q 006534 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (641)
Q Consensus 329 vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~s 399 (641)
-...+++|.++...+|.+++... ....|+-+.|.||+|||||+|++.++..++.+.+.++..
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~---------d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRL---------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhcc---------CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 34568999999999998888632 223456788999999999999999999999887777654
No 322
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.25 E-value=0.00025 Score=73.64 Aligned_cols=99 Identities=23% Similarity=0.332 Sum_probs=62.2
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC---eEEeeh-hhH
Q 006534 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSA-SEF 401 (641)
Q Consensus 326 ~~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p---fi~vs~-se~ 401 (641)
....+++++.-.....+.+.+++...- +....+++.||+|+|||++++++..+.... ++.+.. .++
T Consensus 98 ~~~~sle~l~~~~~~~~~~~~~l~~~v----------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 98 SKPFSLEDLGESGSIPEEIAEFLRSAV----------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp SS--CHCCCCHTHHCHHHHHHHHHHCH----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccccHhhccCchhhHHHHHHHHhhcc----------ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 345688888777766666666665431 123579999999999999999999987433 333321 122
Q ss_pred HHH------Hh-hcchHHHHHHHHHHHhcCCceEEEcchh
Q 006534 402 VEL------YV-GMGASRVRDLFARAKKEAPSIIFIDEID 434 (641)
Q Consensus 402 v~~------~v-G~~~~~vr~lF~~A~~~aP~ILfIDEID 434 (641)
.-. +. ........+++..+....|++|+|+||-
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 110 00 1234567788888888999999999994
No 323
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.25 E-value=0.0038 Score=67.78 Aligned_cols=159 Identities=18% Similarity=0.252 Sum_probs=90.4
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH------H-
Q 006534 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL------Y- 405 (641)
Q Consensus 333 DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~------~- 405 (641)
.+.+.+.+...|..++-. + ....|..|.|||..|||||.+.+++.++++.|.+.++|-+.... .
T Consensus 7 ~v~~Re~qi~~L~~Llg~--~-------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGN--N-------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred CccchHHHHHHHHHHhCC--C-------CcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHH
Confidence 466677766666655521 1 12467788999999999999999999999999999988665431 0
Q ss_pred --h------h----cchHHHHH---HHHH--HHhcC--CceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC
Q 006534 406 --V------G----MGASRVRD---LFAR--AKKEA--PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 466 (641)
Q Consensus 406 --v------G----~~~~~vr~---lF~~--A~~~a--P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~ 466 (641)
+ | .....+.+ +|.+ +.... .-.|++|.+|.+-.. + ...++.|+..-+-.
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~-~-----------a~ll~~l~~L~el~ 145 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM-D-----------AILLQCLFRLYELL 145 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc-c-----------hHHHHHHHHHHHHh
Confidence 0 0 01122222 2333 22222 347889999998521 1 22344444432222
Q ss_pred CCCCcEEEEEecCCCCCCChhhhCCCCcc-eEEEecCCCHHHHHHHHHHH
Q 006534 467 DSNSAVIVLGATNRSDVLDPALRRPGRFD-RVVMVETPDKIGREAILKVH 515 (641)
Q Consensus 467 ~~~~~ViVIaATN~pd~LDpALlRpgRFd-~~I~v~~Pd~~eR~~IL~~~ 515 (641)
.. ..+.+|...-..+ +.-+.+-|-++ -.+++|.|+.++.+.|+..-
T Consensus 146 ~~-~~i~iils~~~~e--~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 146 NE-PTIVIILSAPSCE--KQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred CC-CceEEEEeccccH--HHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 22 2333333222111 11112233443 36788999999998887654
No 324
>PRK13947 shikimate kinase; Provisional
Probab=97.24 E-value=0.00028 Score=67.73 Aligned_cols=31 Identities=39% Similarity=0.615 Sum_probs=28.6
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEee
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~vs 397 (641)
+|+|.|+||||||++|+.+|..++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999997654
No 325
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.24 E-value=0.0012 Score=61.69 Aligned_cols=52 Identities=25% Similarity=0.383 Sum_probs=39.9
Q ss_pred ccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc
Q 006534 332 ADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 332 ~DV~G~~e~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el 389 (641)
..|.|++-+++.+-..+.. +.++ ..+.|--+-|+||||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3699999999988777765 4443 22344445589999999999999999974
No 326
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.23 E-value=0.0059 Score=61.21 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=26.4
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~elg~pfi 394 (641)
+.-+++.|+||+|||++|+.+|.+++.+++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~~ 32 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDIV 32 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 456899999999999999999999987653
No 327
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.21 E-value=0.00047 Score=68.72 Aligned_cols=67 Identities=24% Similarity=0.393 Sum_probs=43.4
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCC----CeEEeeh-hhHHH---------HHhhcchHHHHHHHHHHHhcCCceEEEcc
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAEV----PFISCSA-SEFVE---------LYVGMGASRVRDLFARAKKEAPSIIFIDE 432 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~----pfi~vs~-se~v~---------~~vG~~~~~vr~lF~~A~~~aP~ILfIDE 432 (641)
-+++.||+|+|||+++++++++... .++.+.. .++.. .-+|.....+.+.+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3789999999999999999887642 2222211 11110 01122233455666777777899999999
Q ss_pred h
Q 006534 433 I 433 (641)
Q Consensus 433 I 433 (641)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 328
>PRK05973 replicative DNA helicase; Provisional
Probab=97.20 E-value=0.0024 Score=65.81 Aligned_cols=39 Identities=36% Similarity=0.342 Sum_probs=29.1
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehh
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~s 399 (641)
|..+..-+||.|+||+|||+++-.++.+. |.+.++++..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 44555668999999999999999887654 6666665543
No 329
>PRK13948 shikimate kinase; Provisional
Probab=97.19 E-value=0.00079 Score=66.66 Aligned_cols=44 Identities=30% Similarity=0.469 Sum_probs=35.8
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhc
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGM 408 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~vG~ 408 (641)
++|..|+|.|++|+|||++++.+|..++.+|+..+ .+.+...|.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g~ 51 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTGK 51 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHhC
Confidence 45688999999999999999999999999998554 455554443
No 330
>PRK03839 putative kinase; Provisional
Probab=97.18 E-value=0.00031 Score=68.41 Aligned_cols=31 Identities=26% Similarity=0.488 Sum_probs=28.1
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEee
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~vs 397 (641)
.|+|.|+||+|||++++.+|..++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999997654
No 331
>PRK13946 shikimate kinase; Provisional
Probab=97.18 E-value=0.001 Score=65.45 Aligned_cols=35 Identities=34% Similarity=0.612 Sum_probs=31.3
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeeh
Q 006534 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~ 398 (641)
.++.|+|.|+||+|||++++.+|..+|.+|+..+.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 45679999999999999999999999999987653
No 332
>PRK09354 recA recombinase A; Provisional
Probab=97.17 E-value=0.0015 Score=70.84 Aligned_cols=78 Identities=23% Similarity=0.217 Sum_probs=49.9
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHh---cCCCeEEeehhhHHHH-H---------------hhcchHHHHHHHHHHH
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVEL-Y---------------VGMGASRVRDLFARAK 421 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~e---lg~pfi~vs~se~v~~-~---------------vG~~~~~vr~lF~~A~ 421 (641)
|.+..+-++++||||||||+||-.++.+ .|...++++..+-.+. + ....+..+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 4455566889999999999999987654 3667777765542221 0 0011222222223345
Q ss_pred hcCCceEEEcchhhhhh
Q 006534 422 KEAPSIIFIDEIDAVAK 438 (641)
Q Consensus 422 ~~aP~ILfIDEIDaL~~ 438 (641)
...+.+|+||=+-++.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 56788999999999875
No 333
>PRK14974 cell division protein FtsY; Provisional
Probab=97.16 E-value=0.002 Score=69.75 Aligned_cols=73 Identities=25% Similarity=0.352 Sum_probs=44.6
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhH-------HHHHh---hc----------chHHHHHHHHHH
Q 006534 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF-------VELYV---GM----------GASRVRDLFARA 420 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~-------v~~~v---G~----------~~~~vr~lF~~A 420 (641)
.|.-++|+||||+|||+++..+|..+ +..+..++++-+ +..+. |. ....+.+..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 47789999999999999888888754 455544554422 11110 10 012234444555
Q ss_pred HhcCCceEEEcchhhh
Q 006534 421 KKEAPSIIFIDEIDAV 436 (641)
Q Consensus 421 ~~~aP~ILfIDEIDaL 436 (641)
+.....+|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 5555668999988554
No 334
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.16 E-value=0.002 Score=66.23 Aligned_cols=36 Identities=31% Similarity=0.552 Sum_probs=29.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~ 403 (641)
|+|+|+||+|||++|++++..+ +.+++.++...+.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~ 40 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRE 40 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHH
Confidence 7899999999999999999876 56777777655533
No 335
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.16 E-value=0.0019 Score=66.78 Aligned_cols=38 Identities=26% Similarity=0.249 Sum_probs=28.9
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc----CCCeEEeeh
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSA 398 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~el----g~pfi~vs~ 398 (641)
|.....-++|.||||+|||+++..+|..+ +.+.++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 44555678999999999999999887653 556655554
No 336
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.15 E-value=0.00096 Score=72.20 Aligned_cols=70 Identities=23% Similarity=0.358 Sum_probs=46.4
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcC----CCeEEee-hhhHHH---------HHhhcchHHHHHHHHHHHhcCCceEEE
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEAE----VPFISCS-ASEFVE---------LYVGMGASRVRDLFARAKKEAPSIIFI 430 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~elg----~pfi~vs-~se~v~---------~~vG~~~~~vr~lF~~A~~~aP~ILfI 430 (641)
...+|+.||+|+|||++.+++.++.. ..++.+. ..++.. .-+|.......+.++.+....|.+|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 34589999999999999999998664 2233332 112211 012222234566777778889999999
Q ss_pred cchh
Q 006534 431 DEID 434 (641)
Q Consensus 431 DEID 434 (641)
||+-
T Consensus 202 gEir 205 (343)
T TIGR01420 202 GEMR 205 (343)
T ss_pred eCCC
Confidence 9983
No 337
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.14 E-value=0.0048 Score=74.19 Aligned_cols=151 Identities=19% Similarity=0.251 Sum_probs=82.6
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehh-------hHHH----HHh----hc-----------c----hHHHHH
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS-------EFVE----LYV----GM-----------G----ASRVRD 415 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~s-------e~v~----~~v----G~-----------~----~~~vr~ 415 (641)
+-++++||+|.|||+++...+...+ ++..++.. .|.. ... +. + ...+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4589999999999999999887766 55444332 1111 110 00 0 011222
Q ss_pred HHHHHHh-cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCCh-hhhCCCC
Q 006534 416 LFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDP-ALRRPGR 493 (641)
Q Consensus 416 lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDp-ALlRpgR 493 (641)
++..... ..|.+|+|||+|.+.. ....+.+..|+..+ ..++.+|.++.....++- .+...
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~~-----------~~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~~~-- 173 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLITN-----------PEIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANLRVR-- 173 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCCC-----------hHHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhHHhc--
Confidence 3333222 5788999999998731 12234555555543 233333334433212221 12111
Q ss_pred cceEEEec----CCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCC
Q 006534 494 FDRVVMVE----TPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (641)
Q Consensus 494 Fd~~I~v~----~Pd~~eR~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfS 540 (641)
+..+.+. ..+.++-.+++...+. .+++++ +...+.+.|.|+.
T Consensus 174 -~~~~~l~~~~l~f~~~e~~~ll~~~~~---~~~~~~-~~~~l~~~t~Gwp 219 (903)
T PRK04841 174 -DQLLEIGSQQLAFDHQEAQQFFDQRLS---SPIEAA-ESSRLCDDVEGWA 219 (903)
T ss_pred -CcceecCHHhCCCCHHHHHHHHHhccC---CCCCHH-HHHHHHHHhCChH
Confidence 2244555 5688888888876643 344443 4778889998854
No 338
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.14 E-value=0.00043 Score=67.31 Aligned_cols=39 Identities=26% Similarity=0.468 Sum_probs=33.3
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~ 404 (641)
+-++|.|+||+|||++|++++.+++.+++.++.+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~ 41 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA 41 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh
Confidence 468999999999999999999999988887777666543
No 339
>PLN02674 adenylate kinase
Probab=97.13 E-value=0.0026 Score=65.93 Aligned_cols=41 Identities=20% Similarity=0.459 Sum_probs=32.4
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHH
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~ 405 (641)
+++..++|.||||+||+++|+.+|...+++.+ +..+++...
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~hi--s~GdllR~~ 69 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLRAA 69 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEE--chhHHHHHH
Confidence 44567999999999999999999999986555 555665443
No 340
>PRK00625 shikimate kinase; Provisional
Probab=97.13 E-value=0.00042 Score=67.99 Aligned_cols=31 Identities=39% Similarity=0.641 Sum_probs=28.8
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEee
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~vs 397 (641)
.|+|+|+||+|||++++.+|..++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999998764
No 341
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.12 E-value=0.0031 Score=61.66 Aligned_cols=95 Identities=11% Similarity=0.162 Sum_probs=55.1
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHh-h----------------cchHHHHHHHHHHHhcCCceEE
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV-G----------------MGASRVRDLFARAKKEAPSIIF 429 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~v-G----------------~~~~~vr~lF~~A~~~aP~ILf 429 (641)
-+|+.||||+|||++|..++.+.+.+.+++........-. . +....+..++... ...+.+|+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 4899999999999999999999888877776543211100 0 0011233333221 13356899
Q ss_pred EcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcC
Q 006534 430 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 465 (641)
Q Consensus 430 IDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg 465 (641)
||-+..+....-.. ...+.....+.+++..+..
T Consensus 82 ID~Lt~~~~n~l~~---~~~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 82 VDCLTTWVTNLLFE---EGEEAIAAEIDALLAALQQ 114 (170)
T ss_pred ehhHHHHHHHHhcc---cchHHHHHHHHHHHHHHHc
Confidence 99999886543110 0002234455666666653
No 342
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.11 E-value=0.00056 Score=67.38 Aligned_cols=70 Identities=26% Similarity=0.369 Sum_probs=46.1
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhcC--CCeEEeehh-hHHHH-------------HhhcchHHHHHHHHHHHhcCCce
Q 006534 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSAS-EFVEL-------------YVGMGASRVRDLFARAKKEAPSI 427 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAIA~elg--~pfi~vs~s-e~v~~-------------~vG~~~~~vr~lF~~A~~~aP~I 427 (641)
....++|.||+|+|||++++++++... ...+.+... ++... ..+.....+.+++..+....|++
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~ 103 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDR 103 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCE
Confidence 356799999999999999999998753 222222111 11000 00112244667777788888999
Q ss_pred EEEcch
Q 006534 428 IFIDEI 433 (641)
Q Consensus 428 LfIDEI 433 (641)
++++|+
T Consensus 104 i~igEi 109 (186)
T cd01130 104 IIVGEV 109 (186)
T ss_pred EEEEcc
Confidence 999998
No 343
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.10 E-value=0.0017 Score=69.24 Aligned_cols=35 Identities=37% Similarity=0.657 Sum_probs=31.6
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEe
Q 006534 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~v 396 (641)
..++..|+|.|+||+|||++++.+|..+|.+|+.+
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 45677899999999999999999999999999943
No 344
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.0011 Score=68.29 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.7
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHh
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~e 388 (641)
--|-|.||+|||||||.+.+|+-
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34889999999999999999984
No 345
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.09 E-value=0.0012 Score=63.34 Aligned_cols=33 Identities=36% Similarity=0.633 Sum_probs=29.5
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEee
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs 397 (641)
..+||++|-||||||+++..+|...+.+++.++
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 346999999999999999999999999988663
No 346
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.07 E-value=0.0035 Score=64.15 Aligned_cols=69 Identities=23% Similarity=0.377 Sum_probs=44.4
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhc--------CCCeEEeeh-hhHHHHHhhc-------------chHHHHHHHHHHHhcC
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEA--------EVPFISCSA-SEFVELYVGM-------------GASRVRDLFARAKKEA 424 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el--------g~pfi~vs~-se~v~~~vG~-------------~~~~vr~lF~~A~~~a 424 (641)
+.|+.||||||||++.|-+|.-+ +..+..++- ++......|. ..-+-..+....+.++
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~ 218 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMS 218 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcC
Confidence 58999999999999999998854 233333432 2222211121 1122234566678899
Q ss_pred CceEEEcchhh
Q 006534 425 PSIIFIDEIDA 435 (641)
Q Consensus 425 P~ILfIDEIDa 435 (641)
|.|+++|||..
T Consensus 219 PEViIvDEIGt 229 (308)
T COG3854 219 PEVIIVDEIGT 229 (308)
T ss_pred CcEEEEecccc
Confidence 99999999954
No 347
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.06 E-value=0.00046 Score=73.40 Aligned_cols=70 Identities=26% Similarity=0.361 Sum_probs=48.1
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEeeh-hhHH-------HHHhhcchHHHHHHHHHHHhcCCceEEEc
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSA-SEFV-------ELYVGMGASRVRDLFARAKKEAPSIIFID 431 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~el-----g~pfi~vs~-se~v-------~~~vG~~~~~vr~lF~~A~~~aP~ILfID 431 (641)
.+++|+.||+|+|||+++++++++. +..++.+.- .++. ....+.......+++..+....|+.|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 3579999999999999999999875 233333321 1111 01111222267788888999999999999
Q ss_pred chh
Q 006534 432 EID 434 (641)
Q Consensus 432 EID 434 (641)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 983
No 348
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.06 E-value=0.004 Score=62.49 Aligned_cols=125 Identities=27% Similarity=0.434 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHHHH
Q 006534 341 KEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARA 420 (641)
Q Consensus 341 K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~vG~~~~~vr~lF~~A 420 (641)
+..|..+|....+| |......++|.|+-|+|||++.+.|+.+ ++.-+.... .....+. ..
T Consensus 34 ~~wl~~~Var~~~p------g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~------~~kd~~~----~l 93 (198)
T PF05272_consen 34 RKWLVGAVARAYEP------GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDF------DDKDFLE----QL 93 (198)
T ss_pred HHHHHHHHHHHhCC------CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccC------CCcHHHH----HH
Confidence 34444555554444 5556667889999999999999999666 221111100 0011111 11
Q ss_pred HhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhh-hcCCCC---------CCcEEEEEecCCCCCC-Chhhh
Q 006534 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE-MDGFDS---------NSAVIVLGATNRSDVL-DPALR 489 (641)
Q Consensus 421 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~e-mdg~~~---------~~~ViVIaATN~pd~L-DpALl 489 (641)
... -|+.+||++.+.++. . ..+..+++. .+.+.. ....++|+|||..+-| |+.=-
T Consensus 94 ~~~--~iveldEl~~~~k~~-----------~-~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGn 159 (198)
T PF05272_consen 94 QGK--WIVELDELDGLSKKD-----------V-EALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGN 159 (198)
T ss_pred HHh--HheeHHHHhhcchhh-----------H-HHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCC
Confidence 111 289999999876221 1 233334433 332221 2357889999998755 44444
Q ss_pred CCCCcceEEEecC
Q 006534 490 RPGRFDRVVMVET 502 (641)
Q Consensus 490 RpgRFd~~I~v~~ 502 (641)
| || ..|.+..
T Consensus 160 R--Rf-~~v~v~~ 169 (198)
T PF05272_consen 160 R--RF-WPVEVSK 169 (198)
T ss_pred e--EE-EEEEEcC
Confidence 5 77 3555554
No 349
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.05 E-value=0.0014 Score=63.25 Aligned_cols=105 Identities=21% Similarity=0.207 Sum_probs=59.9
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCC--CeEEeehhhH--------HHHHhh-----cchHHHHHHHHHHHhcCCc
Q 006534 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASEF--------VELYVG-----MGASRVRDLFARAKKEAPS 426 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAIA~elg~--pfi~vs~se~--------v~~~vG-----~~~~~vr~lF~~A~~~aP~ 426 (641)
..+...+.|.||+|+|||+|.+.+++.... --+.+++.+. ....++ .+..+-+-.+..|....|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 345566899999999999999999987521 1122222111 111111 1122345566677778899
Q ss_pred eEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC
Q 006534 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (641)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~p 481 (641)
++++||--. +.+....+.+.+++.++.. . +..+|.+|+..
T Consensus 103 illlDEP~~-----------~LD~~~~~~l~~~l~~~~~---~-~~tiii~sh~~ 142 (163)
T cd03216 103 LLILDEPTA-----------ALTPAEVERLFKVIRRLRA---Q-GVAVIFISHRL 142 (163)
T ss_pred EEEEECCCc-----------CCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCH
Confidence 999999632 1233344555566665531 2 23444556554
No 350
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.05 E-value=0.00052 Score=66.65 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=28.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~ 404 (641)
|+++||||+|||++|+.+|.+.+++. ++.++++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~lr~ 36 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLLRA 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHHHH
Confidence 78999999999999999999998655 455555543
No 351
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.01 E-value=0.0018 Score=64.86 Aligned_cols=131 Identities=25% Similarity=0.384 Sum_probs=67.7
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhc---CC--CeEEeehh-----hHHHHH---hhc----------chHHHHHHHHHHH
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EV--PFISCSAS-----EFVELY---VGM----------GASRVRDLFARAK 421 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~el---g~--pfi~vs~s-----e~v~~~---vG~----------~~~~vr~lF~~A~ 421 (641)
|+-++|+||+|+|||+.+-.+|..+ +. -+++++.. +-+..| .+. ....+++.++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 5679999999999999988888754 33 33444321 111111 110 1223445566665
Q ss_pred hcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhh--CCCCcceEEE
Q 006534 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALR--RPGRFDRVVM 499 (641)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALl--RpgRFd~~I~ 499 (641)
...-.+|+||-..... .+.+.-+-+.+++..+ .....++|+.++-..+.++.... +...++ .+-
T Consensus 81 ~~~~D~vlIDT~Gr~~----------~d~~~~~el~~~~~~~---~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~-~lI 146 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSP----------RDEELLEELKKLLEAL---NPDEVHLVLSATMGQEDLEQALAFYEAFGID-GLI 146 (196)
T ss_dssp HTTSSEEEEEE-SSSS----------THHHHHHHHHHHHHHH---SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTC-EEE
T ss_pred hcCCCEEEEecCCcch----------hhHHHHHHHHHHhhhc---CCccceEEEecccChHHHHHHHHHhhcccCc-eEE
Confidence 5555699998763221 1222233444455444 23334566666666555553332 212234 344
Q ss_pred ecCCCHHHHH
Q 006534 500 VETPDKIGRE 509 (641)
Q Consensus 500 v~~Pd~~eR~ 509 (641)
+...|...+.
T Consensus 147 lTKlDet~~~ 156 (196)
T PF00448_consen 147 LTKLDETARL 156 (196)
T ss_dssp EESTTSSSTT
T ss_pred EEeecCCCCc
Confidence 5566554443
No 352
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.01 E-value=0.039 Score=59.04 Aligned_cols=122 Identities=16% Similarity=0.151 Sum_probs=64.1
Q ss_pred CCceEEEcchhhhhhhcCCc--ccccchhHHHHHHHHHHhhhcCCCC-CCcEEE--EEecCC---CC--CCChhhhCCCC
Q 006534 424 APSIIFIDEIDAVAKSRDGR--FRIVSNDEREQTLNQLLTEMDGFDS-NSAVIV--LGATNR---SD--VLDPALRRPGR 493 (641)
Q Consensus 424 aP~ILfIDEIDaL~~~r~~~--~~~~~~~e~~~~LnqLL~emdg~~~-~~~ViV--IaATN~---pd--~LDpALlRpgR 493 (641)
-|.++-||++.++.....=. ...--+...-.+...|+..+.+-.. ..+.+| +++|.. +. .++.++.....
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~ 235 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGGKEG 235 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhccccC
Confidence 46677799999998652100 0011122223344444444332222 334444 566532 22 56666653211
Q ss_pred ------cc-------------eEEEecCCCHHHHHHHHHHHHhcCCCC--CCCCCCHHHHHHhCCCCCHHHHHH
Q 006534 494 ------FD-------------RVVMVETPDKIGREAILKVHVSKKELP--LAKDIDLGDIASMTTGFTGADLAN 546 (641)
Q Consensus 494 ------Fd-------------~~I~v~~Pd~~eR~~IL~~~l~~~~l~--l~~dvdl~~LA~~t~GfSgaDL~~ 546 (641)
|. ..|.++..+.+|-..+++.+.+..-+. ..++.-.+.+...+ |.++++|..
T Consensus 236 ~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s-~GNp~el~k 308 (309)
T PF10236_consen 236 FPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSS-NGNPRELEK 308 (309)
T ss_pred CCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhc-CCCHHHhcc
Confidence 21 267899999999999999988764322 11222233344333 448887754
No 353
>PRK14531 adenylate kinase; Provisional
Probab=97.01 E-value=0.00068 Score=66.50 Aligned_cols=36 Identities=22% Similarity=0.476 Sum_probs=29.7
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~ 403 (641)
..|+++||||+|||++++.+|...|+++++ ..+++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~lr 38 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLLR 38 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHHH
Confidence 459999999999999999999999987765 444443
No 354
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.00 E-value=0.0015 Score=75.01 Aligned_cols=28 Identities=43% Similarity=0.661 Sum_probs=24.7
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHh
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~e 388 (641)
..++...+|+.||+|||||+|.||+|+-
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4566778999999999999999999984
No 355
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.00 E-value=0.0076 Score=60.80 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=29.7
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehh
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~s 399 (641)
|.+...-+++.|+||+|||+++..++.+. +.+.++++..
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 45556678999999999999999887543 6666666553
No 356
>PRK04040 adenylate kinase; Provisional
Probab=96.99 E-value=0.0053 Score=60.95 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=26.7
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhc--CCCeEE
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEA--EVPFIS 395 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~el--g~pfi~ 395 (641)
|+-++++|+||+|||++++.++.++ +.+++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~ 34 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVN 34 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEe
Confidence 5669999999999999999999998 666543
No 357
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.98 E-value=0.00065 Score=62.98 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=28.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEee
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~vs 397 (641)
|.+.|+||+|||++|+.+|..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998776
No 358
>PRK06217 hypothetical protein; Validated
Probab=96.97 E-value=0.00069 Score=66.39 Aligned_cols=31 Identities=26% Similarity=0.544 Sum_probs=28.2
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEee
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~vs 397 (641)
.|+|.|+||+|||++|++++..++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999987654
No 359
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.97 E-value=0.0041 Score=62.89 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.6
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHH
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAG 387 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~ 387 (641)
++.++|+||.|+|||++.|.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 46799999999999999999983
No 360
>PLN02200 adenylate kinase family protein
Probab=96.97 E-value=0.00086 Score=68.88 Aligned_cols=42 Identities=19% Similarity=0.311 Sum_probs=33.7
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~ 404 (641)
+.+.|.-+++.||||+|||++|+.+|.+.|++. ++.++++..
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdllR~ 80 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDLLRR 80 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHHHHH
Confidence 355677799999999999999999999998654 566666543
No 361
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.97 E-value=0.0028 Score=64.30 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=30.0
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc----CCCeEEeeh
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSA 398 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~el----g~pfi~vs~ 398 (641)
|..+..-++|.|+||+|||+++..++... +.+.++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 56666679999999999999999887643 677777663
No 362
>PRK10867 signal recognition particle protein; Provisional
Probab=96.93 E-value=0.013 Score=65.62 Aligned_cols=75 Identities=23% Similarity=0.391 Sum_probs=46.5
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhc----CCCeEEeehhhHHHH----------------Hh---h-cchHHHHHHH
Q 006534 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVEL----------------YV---G-MGASRVRDLF 417 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAIA~el----g~pfi~vs~se~v~~----------------~v---G-~~~~~vr~lF 417 (641)
..+|.-++++||+|+|||+++..+|..+ |.....++++.+... +. + ......++..
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 3557889999999999999777777643 566666666533211 00 0 1122233455
Q ss_pred HHHHhcCCceEEEcchhhh
Q 006534 418 ARAKKEAPSIIFIDEIDAV 436 (641)
Q Consensus 418 ~~A~~~aP~ILfIDEIDaL 436 (641)
+.++.....+|+||=.-.+
T Consensus 177 ~~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHHhcCCCEEEEeCCCCc
Confidence 5566666778888876443
No 363
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.92 E-value=0.001 Score=65.04 Aligned_cols=23 Identities=43% Similarity=0.664 Sum_probs=20.4
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhc
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el 389 (641)
.++|+|+||+||||+++.++.++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999887
No 364
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.92 E-value=0.00077 Score=65.79 Aligned_cols=35 Identities=34% Similarity=0.606 Sum_probs=28.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~ 404 (641)
|+|.||||+|||++|+.+|.+.+++++. .++++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~--~~~l~~~ 36 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS--TGDLLRE 36 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CcHHHHH
Confidence 7999999999999999999998877654 4555443
No 365
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.91 E-value=0.00081 Score=63.26 Aligned_cols=32 Identities=31% Similarity=0.727 Sum_probs=26.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhH
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~ 401 (641)
++|+|+||+|||++|+.++...+.+++ +.+.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~ 33 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDL 33 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCccc
Confidence 689999999999999999999887665 44444
No 366
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.91 E-value=0.0018 Score=69.86 Aligned_cols=71 Identities=25% Similarity=0.375 Sum_probs=48.3
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhcC--CCeEEee-hhhHHH--------HH-----hhcchHHHHHHHHHHHhcCCce
Q 006534 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCS-ASEFVE--------LY-----VGMGASRVRDLFARAKKEAPSI 427 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAIA~elg--~pfi~vs-~se~v~--------~~-----vG~~~~~vr~lF~~A~~~aP~I 427 (641)
..+++|+.||+|+|||+++++++.+.. ..++.+. ..++.- .. .+...-...++++.+....|+.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 346799999999999999999998763 2233321 111110 00 1222334678889999999999
Q ss_pred EEEcchh
Q 006534 428 IFIDEID 434 (641)
Q Consensus 428 LfIDEID 434 (641)
|++.|+-
T Consensus 239 IivGEiR 245 (332)
T PRK13900 239 IIVGELR 245 (332)
T ss_pred EEEEecC
Confidence 9999984
No 367
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.91 E-value=0.0023 Score=66.91 Aligned_cols=93 Identities=20% Similarity=0.272 Sum_probs=57.0
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC---CCeEEeeh-hhHHHH
Q 006534 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSA-SEFVEL 404 (641)
Q Consensus 329 vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg---~pfi~vs~-se~v~~ 404 (641)
.+++++.-.++..+.|++++. . ....+++.||+|+|||++++++..+.. ..++.+.. .++.-.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~---~----------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~ 123 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE---K----------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP 123 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh---c----------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC
Confidence 457777555555555544442 1 123489999999999999999987653 23444421 111100
Q ss_pred -----Hh-hcchHHHHHHHHHHHhcCCceEEEcchh
Q 006534 405 -----YV-GMGASRVRDLFARAKKEAPSIIFIDEID 434 (641)
Q Consensus 405 -----~v-G~~~~~vr~lF~~A~~~aP~ILfIDEID 434 (641)
.+ ........+++..+....|++|+|+|+.
T Consensus 124 ~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 124 GINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 00 1111235677777888899999999994
No 368
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.90 E-value=0.0086 Score=60.46 Aligned_cols=38 Identities=32% Similarity=0.359 Sum_probs=28.4
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHh---cCCCeEEeeh
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSA 398 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~e---lg~pfi~vs~ 398 (641)
|......++++||||+|||+|+..++.+ .+-+.+.++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 5566677999999999999999987643 2555555554
No 369
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.90 E-value=0.0033 Score=74.49 Aligned_cols=118 Identities=19% Similarity=0.151 Sum_probs=66.0
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHh---cCCCeEEeehhhHHHH----Hhh------------cchHHHHHHHHHHH
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVEL----YVG------------MGASRVRDLFARAK 421 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~e---lg~pfi~vs~se~v~~----~vG------------~~~~~vr~lF~~A~ 421 (641)
|.....-++++||||||||+|+..++.+ .|.+.++++..+-... -.| ..+..+..+-...+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 4455667899999999999999765543 3666666665442220 001 11222222222234
Q ss_pred hcCCceEEEcchhhhhhhcCCcccccc--hhHHHHHHHHHHhhhcCCCCCCcEEEEEec
Q 006534 422 KEAPSIIFIDEIDAVAKSRDGRFRIVS--NDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (641)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~--~~e~~~~LnqLL~emdg~~~~~~ViVIaAT 478 (641)
...+.+|+||-|.++....+-....+. .....+.++++|..|..+-...++.+|.+-
T Consensus 136 ~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 136 SGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred cCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 557889999999999852211000111 123344556666666655445566666553
No 370
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.0016 Score=64.23 Aligned_cols=35 Identities=29% Similarity=0.559 Sum_probs=27.8
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~ 403 (641)
.|+|.||||+||||+|+.+|+. .++..++..++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~r 36 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDILR 36 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHhH
Confidence 4899999999999999999999 4555566555443
No 371
>PHA02624 large T antigen; Provisional
Probab=96.88 E-value=0.0025 Score=73.14 Aligned_cols=206 Identities=17% Similarity=0.145 Sum_probs=104.7
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhc
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSR 440 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r 440 (641)
|.+..+.+||+||||||||+++.+++..++...+.++++.-... |...-.....+++||++-.-.-..
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeecccccccc
Confidence 34444589999999999999999999999766777875432221 111111111267777764322100
Q ss_pred CC-cccccchhHHHHHHHHHHhhhcCC-C-------CCC-c---EEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHH
Q 006534 441 DG-RFRIVSNDEREQTLNQLLTEMDGF-D-------SNS-A---VIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIG 507 (641)
Q Consensus 441 ~~-~~~~~~~~e~~~~LnqLL~emdg~-~-------~~~-~---ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~e 507 (641)
.. ..+.+.+ -+.-|-..+||. . .+. . --.|.|||. ..||..+.- ||.+++.|..-
T Consensus 495 ~~Lp~G~~~d-----Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~k---- 562 (647)
T PHA02624 495 KDLPSGQGMN-----NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKPK---- 562 (647)
T ss_pred ccCCcccccc-----hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhcccccc----
Confidence 00 0000000 012233334443 0 000 0 124457775 467888877 89888877432
Q ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcchhhhhccCC
Q 006534 508 REAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLK 587 (641)
Q Consensus 508 R~~IL~~~l~~~~l~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~rvi~g~~~~~~~ls 587 (641)
..++..+++. +.+--..| .. +|--| .+++-.. -..++|.+.+...+..
T Consensus 563 --~~l~~sL~~~-----~~l~~~Ri--lq---sg~tl------LllLIw~-----~pv~~F~~~Iq~~V~~--------- 610 (647)
T PHA02624 563 --PYLKKSLKKN-----EYLLEKRI--LQ---SGETL------LLLLIWY-----RPVEDFAEEIQEKVVT--------- 610 (647)
T ss_pred --HHHHHHHhcC-----HHHHHHHH--hc---cHHHH------HHHHHHh-----CCHHHHHHHHHHHHHH---------
Confidence 2333333321 11100011 11 22222 1111111 1344566665543321
Q ss_pred hhHHHHHHHHHHHHHHHHhHHhhcCCCCCceeeEeeee
Q 006534 588 GSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRD 625 (641)
Q Consensus 588 ~~ek~~va~hEaghAlv~~~l~~~~~~~~~v~kiti~~ 625 (641)
- +...-+|++....+.....+..|.++++++-+..
T Consensus 611 --w-Ke~L~~ev~~~~f~~m~~Nv~~G~d~~~~~~~~~ 645 (647)
T PHA02624 611 --W-KERLDKEVSDTTFATMKENIHEGKDPLEKIVEED 645 (647)
T ss_pred --H-HHHHHHHhhHHHHHHHHHHHHcCCCccccccccc
Confidence 1 1133477888888777788889999999886653
No 372
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.88 E-value=0.0067 Score=66.93 Aligned_cols=72 Identities=17% Similarity=0.139 Sum_probs=44.8
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHH----H---HH---------hhcchHHHHHHHHHHHh-c
Q 006534 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV----E---LY---------VGMGASRVRDLFARAKK-E 423 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v----~---~~---------vG~~~~~vr~lF~~A~~-~ 423 (641)
.|+-++|.||+|+|||+++..+|..+ +..+..++++.+. + .| +......+.+.+..+.. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 46789999999999999999999865 3444444443221 1 11 12234455555555543 2
Q ss_pred CCceEEEcchhh
Q 006534 424 APSIIFIDEIDA 435 (641)
Q Consensus 424 aP~ILfIDEIDa 435 (641)
...+||||-...
T Consensus 320 ~~DvVLIDTaGR 331 (436)
T PRK11889 320 RVDYILIDTAGK 331 (436)
T ss_pred CCCEEEEeCccc
Confidence 346888887643
No 373
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.88 E-value=0.0037 Score=59.54 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=30.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~ 403 (641)
++|+|+||+|||++|+.++..+ +.+.+.++...+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 6899999999999999999987 66777777665543
No 374
>PRK14530 adenylate kinase; Provisional
Probab=96.87 E-value=0.001 Score=66.96 Aligned_cols=36 Identities=28% Similarity=0.477 Sum_probs=29.8
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~ 404 (641)
.|+|.||||+|||++|+.+|...+++++.+ .+++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~--g~~lr~ 40 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT--GDALRA 40 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec--cHHHHH
Confidence 599999999999999999999999877654 445443
No 375
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.87 E-value=0.0011 Score=67.92 Aligned_cols=38 Identities=24% Similarity=0.501 Sum_probs=31.1
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006534 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~ 403 (641)
.|..|+|.||||+|||++|+.+|...+++++++ .+++.
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~--gdllr 42 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINM--GNILR 42 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEEC--ChHHH
Confidence 345599999999999999999999999887765 44443
No 376
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.86 E-value=0.00087 Score=64.01 Aligned_cols=32 Identities=31% Similarity=0.621 Sum_probs=26.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhH
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~ 401 (641)
++|.||||+|||++|+.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 578999999999999999999987665 44444
No 377
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.86 E-value=0.003 Score=66.34 Aligned_cols=40 Identities=23% Similarity=0.427 Sum_probs=30.5
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHH
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~ 405 (641)
+.-++|.|+||||||++|+.++.++. .++.++..++....
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~~~ 41 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQSL 41 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHHHh
Confidence 34588999999999999999999983 34555666665543
No 378
>PRK06547 hypothetical protein; Provisional
Probab=96.85 E-value=0.0011 Score=64.85 Aligned_cols=35 Identities=31% Similarity=0.374 Sum_probs=30.2
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEee
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs 397 (641)
..+.-|++.|++|+|||++|+.+++.+++++++.+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 45667899999999999999999999998887653
No 379
>PRK06696 uridine kinase; Validated
Probab=96.85 E-value=0.0017 Score=65.84 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=34.1
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHH
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v 402 (641)
..|.-|.+.|++|+|||+||+.|+..+ |.+.+.++.++|.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 346678899999999999999999988 7788888877774
No 380
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.84 E-value=0.0082 Score=62.48 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=28.6
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeeh
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~ 398 (641)
|.....-+|++||||||||+|+-.+|.+. |-+.++++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 45566779999999999999999886642 556555553
No 381
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.84 E-value=0.016 Score=59.87 Aligned_cols=133 Identities=17% Similarity=0.277 Sum_probs=73.5
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCCC--eEEeehhhH---HHHH-----hhc--chH-----------HHHHHHHH
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSASEF---VELY-----VGM--GAS-----------RVRDLFAR 419 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~elg~p--fi~vs~se~---v~~~-----vG~--~~~-----------~vr~lF~~ 419 (641)
..|-.+.+.|++|||||++++.+.....-. .+.+-+... ...| +.. ... .+.+....
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 345569999999999999999998765321 122211111 1111 000 000 11111111
Q ss_pred HHh---cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcce
Q 006534 420 AKK---EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDR 496 (641)
Q Consensus 420 A~~---~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~ 496 (641)
... ..+++|++|++.. . ....+.+.+++..-. .-++-+|..+...-.||+.++. -.+.
T Consensus 91 ~~~~k~~~~~LiIlDD~~~---~----------~~k~~~l~~~~~~gR----H~~is~i~l~Q~~~~lp~~iR~--n~~y 151 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGD---K----------KLKSKILRQFFNNGR----HYNISIIFLSQSYFHLPPNIRS--NIDY 151 (241)
T ss_pred hcccCCCCCeEEEEeCCCC---c----------hhhhHHHHHHHhccc----ccceEEEEEeeecccCCHHHhh--cceE
Confidence 111 2367999999732 0 112345566665322 3457777788878889999865 5666
Q ss_pred EEEecCCCHHHHHHHHHHH
Q 006534 497 VVMVETPDKIGREAILKVH 515 (641)
Q Consensus 497 ~I~v~~Pd~~eR~~IL~~~ 515 (641)
.+-+. -+..+...|++.+
T Consensus 152 ~i~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 152 FIIFN-NSKRDLENIYRNM 169 (241)
T ss_pred EEEec-CcHHHHHHHHHhc
Confidence 66554 4666666555554
No 382
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.84 E-value=0.0076 Score=58.96 Aligned_cols=95 Identities=15% Similarity=0.105 Sum_probs=54.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH-----HH---H---------hhcchHHHHHHHHHHHhcCCceEEE
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV-----EL---Y---------VGMGASRVRDLFARAKKEAPSIIFI 430 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v-----~~---~---------vG~~~~~vr~lF~~A~~~aP~ILfI 430 (641)
+|+.|++|+|||++|..++.+.+.+.+++....-. .. . ..+....+.+.+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 68999999999999999998877777777543221 11 0 0112223333332221 4669999
Q ss_pred cchhhhhhhcCCcccccchhHHHHHHHHHHhhhc
Q 006534 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (641)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd 464 (641)
|-+..+....-........+...+.+..|+..+.
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~ 113 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVR 113 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHH
Confidence 9998886544211000000222345566666665
No 383
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.83 E-value=0.0083 Score=68.00 Aligned_cols=78 Identities=26% Similarity=0.257 Sum_probs=54.4
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHh------h--------c--------------c
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV------G--------M--------------G 409 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~~v------G--------~--------------~ 409 (641)
|..+...+|+.||||+|||+|+-.++.+. |-+.++++..+-.+.+. | . .
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 45556679999999999999999998754 55666666544332111 1 0 0
Q ss_pred hHHHHHHHHHHHhcCCceEEEcchhhhhh
Q 006534 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAK 438 (641)
Q Consensus 410 ~~~vr~lF~~A~~~aP~ILfIDEIDaL~~ 438 (641)
...+..+.+......|.+|+||-+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 34455666667777899999999998854
No 384
>PRK04328 hypothetical protein; Provisional
Probab=96.83 E-value=0.012 Score=60.83 Aligned_cols=38 Identities=29% Similarity=0.389 Sum_probs=28.6
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHh---cCCCeEEeeh
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSA 398 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~e---lg~pfi~vs~ 398 (641)
|.+....+|++||||||||+|+..++.+ .|-+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 4556677999999999999999877654 3566666654
No 385
>PF13479 AAA_24: AAA domain
Probab=96.82 E-value=0.0036 Score=63.16 Aligned_cols=68 Identities=24% Similarity=0.341 Sum_probs=39.4
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCCCe-EEeehhhH-HHH------HhhcchHHHHHHHHHHH--hcCCceEEEcchh
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPF-ISCSASEF-VEL------YVGMGASRVRDLFARAK--KEAPSIIFIDEID 434 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~elg~pf-i~vs~se~-v~~------~vG~~~~~vr~lF~~A~--~~aP~ILfIDEID 434 (641)
+-.++||||||+|||++|..+ +-|+ +.+..... +.. +.=.+-..+.+.+..+. ...-.+|+||.++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 446999999999999999987 3333 22322210 100 00113344555554432 2334599999888
Q ss_pred hh
Q 006534 435 AV 436 (641)
Q Consensus 435 aL 436 (641)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 76
No 386
>PRK13764 ATPase; Provisional
Probab=96.82 E-value=0.0017 Score=75.14 Aligned_cols=69 Identities=20% Similarity=0.342 Sum_probs=41.6
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcC---CCeEEee-hhhH-----HHHHhhcchHHHHHHHHHHHhcCCceEEEcchh
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCS-ASEF-----VELYVGMGASRVRDLFARAKKEAPSIIFIDEID 434 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~elg---~pfi~vs-~se~-----v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEID 434 (641)
..++|++||||+|||+++++++.++. ..+..+. ..++ +..+... ..........+....|++|++||+-
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~-~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKL-EGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeec-cccHHHHHHHHHhhCCCEEEECCCC
Confidence 46799999999999999999998764 2222321 1122 1111100 0112233333456789999999964
No 387
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.82 E-value=0.0016 Score=69.45 Aligned_cols=74 Identities=22% Similarity=0.410 Sum_probs=48.8
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhcCC--CeEEee-hhhHHH-------HH-----hhcchHHHHHHHHHHHhcCC
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCS-ASEFVE-------LY-----VGMGASRVRDLFARAKKEAP 425 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~elg~--pfi~vs-~se~v~-------~~-----vG~~~~~vr~lF~~A~~~aP 425 (641)
-.+....+++.||+|+|||++++++++.... ..+.+. ..++.- .. .+...-.+.+++..+....|
T Consensus 140 ~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~p 219 (308)
T TIGR02788 140 AIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRP 219 (308)
T ss_pred HhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCC
Confidence 3445678999999999999999999987632 222221 111100 00 01122345778888888999
Q ss_pred ceEEEcchh
Q 006534 426 SIIFIDEID 434 (641)
Q Consensus 426 ~ILfIDEID 434 (641)
.+|++||+-
T Consensus 220 d~ii~gE~r 228 (308)
T TIGR02788 220 DRIILGELR 228 (308)
T ss_pred CeEEEeccC
Confidence 999999984
No 388
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.80 E-value=0.0014 Score=71.15 Aligned_cols=72 Identities=26% Similarity=0.389 Sum_probs=48.5
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCC--CeEEeeh-hhHHH-------H-----HhhcchHHHHHHHHHHHhcCCce
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSA-SEFVE-------L-----YVGMGASRVRDLFARAKKEAPSI 427 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~elg~--pfi~vs~-se~v~-------~-----~vG~~~~~vr~lF~~A~~~aP~I 427 (641)
+..+++|+.||+|+|||+++++++++... .++.+.. .++.- . ..+.+.-...+++..+....|+.
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~ 239 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDR 239 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCe
Confidence 44568999999999999999999997632 2333211 11110 0 01122334667888888999999
Q ss_pred EEEcchh
Q 006534 428 IFIDEID 434 (641)
Q Consensus 428 LfIDEID 434 (641)
|++.|+-
T Consensus 240 IivGEiR 246 (344)
T PRK13851 240 ILLGEMR 246 (344)
T ss_pred EEEEeeC
Confidence 9999973
No 389
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.80 E-value=0.0013 Score=64.17 Aligned_cols=34 Identities=26% Similarity=0.538 Sum_probs=30.4
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeeh
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~ 398 (641)
+..|+|.||+|+|||++++.+|+.++.+|+..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4569999999999999999999999999987654
No 390
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.80 E-value=0.0061 Score=64.77 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=63.4
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---------CCCeEEeehhh------HHHHH--hhcch-------------
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE------FVELY--VGMGA------------- 410 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~el---------g~pfi~vs~se------~v~~~--vG~~~------------- 410 (641)
|...+.-++++||||+|||+|+-.+|..+ +...++++..+ +.+.. .|...
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~ 170 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAY 170 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecC
Confidence 45556668899999999999999998663 23667776544 11110 01100
Q ss_pred ---H---HHHHHHHHHHhc--CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEec
Q 006534 411 ---S---RVRDLFARAKKE--APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (641)
Q Consensus 411 ---~---~vr~lF~~A~~~--aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaAT 478 (641)
. .+..+.+..... .+++|+||=|-++....-.. .+...++.+.+++++..+..+....++.|+.+.
T Consensus 171 ~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~--~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tn 244 (310)
T TIGR02236 171 NSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVG--RGALAERQQKLNKHLHDLLRLADLYNAAVVVTN 244 (310)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcC--chhHHHHHHHHHHHHHHHHHHHHHhCcEEEEec
Confidence 0 112222233333 36799999998875432110 111223445566666655544444556666554
No 391
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.79 E-value=0.0029 Score=63.61 Aligned_cols=29 Identities=41% Similarity=0.665 Sum_probs=26.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEe
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~v 396 (641)
|+++||||+|||++|+.+|...+++.+++
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 89999999999999999999999777764
No 392
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.79 E-value=0.0013 Score=63.31 Aligned_cols=38 Identities=26% Similarity=0.445 Sum_probs=31.1
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHH
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~ 405 (641)
..++|+|++|+|||++++.+|.++|.+|+.. +.+.+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~--D~~~~~~ 40 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDT--DQWLQST 40 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEc--cHHHHHH
Confidence 3589999999999999999999999999855 3444433
No 393
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.78 E-value=0.0027 Score=63.92 Aligned_cols=22 Identities=50% Similarity=0.853 Sum_probs=20.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~el 389 (641)
++|+|+||+|||++|+-+|+++
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 7899999999999999999987
No 394
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.77 E-value=0.012 Score=57.92 Aligned_cols=118 Identities=16% Similarity=0.133 Sum_probs=63.8
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCC-------------CeEEeehhhHHHHHh------h------cchHHHHHHH
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------------PFISCSASEFVELYV------G------MGASRVRDLF 417 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~elg~-------------pfi~vs~se~v~~~v------G------~~~~~vr~lF 417 (641)
.+..-+.|.||+|+|||+|.++++...|- ++..+.-.++++.+- . .+..+-+-.+
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~l 98 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKL 98 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHH
Confidence 44556889999999999999999743321 122222222222211 0 0112334456
Q ss_pred HHHHhcC--CceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcc
Q 006534 418 ARAKKEA--PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFD 495 (641)
Q Consensus 418 ~~A~~~a--P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd 495 (641)
..|.... |.++++||--.- .+.+..+.+.+++.++. . .+..||.+|..++. .+ ..|
T Consensus 99 aral~~~~~p~llLlDEPt~~-----------LD~~~~~~l~~~l~~~~---~-~g~tvIivSH~~~~-----~~--~~d 156 (176)
T cd03238 99 ASELFSEPPGTLFILDEPSTG-----------LHQQDINQLLEVIKGLI---D-LGNTVILIEHNLDV-----LS--SAD 156 (176)
T ss_pred HHHHhhCCCCCEEEEeCCccc-----------CCHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHH-----HH--hCC
Confidence 6666778 899999996331 22333344444454442 1 23345556665432 23 356
Q ss_pred eEEEecC
Q 006534 496 RVVMVET 502 (641)
Q Consensus 496 ~~I~v~~ 502 (641)
+.+.+..
T Consensus 157 ~i~~l~~ 163 (176)
T cd03238 157 WIIDFGP 163 (176)
T ss_pred EEEEECC
Confidence 6666643
No 395
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.75 E-value=0.005 Score=65.86 Aligned_cols=117 Identities=17% Similarity=0.158 Sum_probs=64.3
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---------CCCeEEeehhhH------HHHH--hhcch-------------
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEF------VELY--VGMGA------------- 410 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~el---------g~pfi~vs~se~------v~~~--vG~~~------------- 410 (641)
|...+.-++|+||||+|||.++..+|..+ +...++++..+- .+.. .|...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 45566678899999999999999998653 235666665441 1110 01100
Q ss_pred ------HHHHHHHHHHHh-cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006534 411 ------SRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 411 ------~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN 479 (641)
..+..+...... ..+++|+||=|-++....-.. .+...++.+.+.+++..+..+....++.+|.+..
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVG--RGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccC--CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 001111222223 456799999999986432110 1122234455666666555444445566665553
No 396
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.75 E-value=0.014 Score=64.85 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=26.6
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhc----CCCeEEeehh
Q 006534 364 PPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSAS 399 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAIA~el----g~pfi~vs~s 399 (641)
.+.-++|.||+|+|||+++..+|.+. |.....++++
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D 261 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD 261 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc
Confidence 45568899999999999999999754 3344444443
No 397
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.75 E-value=0.0053 Score=65.84 Aligned_cols=116 Identities=18% Similarity=0.187 Sum_probs=63.7
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---------CCCeEEeehhhH------HHHH--hhc---------------
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEF------VELY--VGM--------------- 408 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~el---------g~pfi~vs~se~------v~~~--vG~--------------- 408 (641)
|.....-++|+||||+|||.|+..+|-.+ +...++++..+- .+.. .|.
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 45555668899999999999999877422 345666664431 1100 011
Q ss_pred chHHHHHHHH----HHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEec
Q 006534 409 GASRVRDLFA----RAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (641)
Q Consensus 409 ~~~~vr~lF~----~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaAT 478 (641)
......+++. ......+.+|+||-|-++....-.+ .+.-.++.+.+.+++..|..+....++.|+.+.
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~--~g~~~~r~~~l~~~~~~L~~la~~~~vavvitN 243 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG--RGELSERQQKLAQMLSRLNKISEEFNVAVFVTN 243 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC--ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEEC
Confidence 0111112222 2234568899999999887532111 112233444566666666555445555665443
No 398
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.75 E-value=0.0028 Score=69.43 Aligned_cols=68 Identities=24% Similarity=0.352 Sum_probs=46.4
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcC-----CCeEEeehh-hHH-----------HHHhhcchHHHHHHHHHHHhcCCceEE
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSAS-EFV-----------ELYVGMGASRVRDLFARAKKEAPSIIF 429 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg-----~pfi~vs~s-e~v-----------~~~vG~~~~~vr~lF~~A~~~aP~ILf 429 (641)
.+|++||+|+|||+++++++++.. ...+.+.-. ++. ...+|.......+.+..+....|++|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 589999999999999999988762 344444221 221 111232233456677778888999999
Q ss_pred Ecchh
Q 006534 430 IDEID 434 (641)
Q Consensus 430 IDEID 434 (641)
++|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99984
No 399
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.73 E-value=0.0088 Score=58.52 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=28.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHh
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~v 406 (641)
|.|+|+||+|||++++.++. .|++++. ++++.....
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~--~D~~~~~~~ 37 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVID--ADKIAHEVY 37 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEe--cCHHHHhhh
Confidence 68999999999999999998 7877654 455655433
No 400
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.72 E-value=0.002 Score=69.40 Aligned_cols=69 Identities=23% Similarity=0.308 Sum_probs=47.3
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEee-hhhHHHH------HhhcchHHHHHHHHHHHhcCCceEEEcc
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCS-ASEFVEL------YVGMGASRVRDLFARAKKEAPSIIFIDE 432 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~el-----g~pfi~vs-~se~v~~------~vG~~~~~vr~lF~~A~~~aP~ILfIDE 432 (641)
.+++|+.|++|+|||+++++++.+. +..++.+. ..++.-. +.....-...++++.+....|+.|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4579999999999999999999875 23344432 1122100 0111223467788888899999999999
Q ss_pred h
Q 006534 433 I 433 (641)
Q Consensus 433 I 433 (641)
+
T Consensus 224 i 224 (323)
T PRK13833 224 V 224 (323)
T ss_pred c
Confidence 8
No 401
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.72 E-value=0.0049 Score=66.81 Aligned_cols=23 Identities=48% Similarity=0.606 Sum_probs=21.2
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhc
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el 389 (641)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 402
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.71 E-value=0.011 Score=59.00 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=30.7
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHh
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~v 406 (641)
-|.|+|++|+|||++++.++...|.+++ +++++.....
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~~~~~ 40 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYAREAL 40 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHHHHHH
Confidence 3889999999999999999988888887 5555654433
No 403
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.71 E-value=0.0027 Score=60.78 Aligned_cols=35 Identities=37% Similarity=0.583 Sum_probs=25.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~ 403 (641)
|.|+|+||||||+|+++++.. |.+++.-.+.++..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~~ 36 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREIIE 36 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHHH
Confidence 789999999999999999998 88887555555544
No 404
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.71 E-value=0.0017 Score=69.73 Aligned_cols=70 Identities=23% Similarity=0.332 Sum_probs=47.0
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEee-hhhHHH------HHhhcchHHHHHHHHHHHhcCCceEEEcc
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCS-ASEFVE------LYVGMGASRVRDLFARAKKEAPSIIFIDE 432 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~el-----g~pfi~vs-~se~v~------~~vG~~~~~vr~lF~~A~~~aP~ILfIDE 432 (641)
.+++++.|++|+|||+++++++++. ...++.+. ..++.- .+.....-...++++.+....|+.|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 4679999999999999999999863 12233221 111110 00111233567888999999999999999
Q ss_pred hh
Q 006534 433 ID 434 (641)
Q Consensus 433 ID 434 (641)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 83
No 405
>PRK13808 adenylate kinase; Provisional
Probab=96.70 E-value=0.0089 Score=64.55 Aligned_cols=34 Identities=24% Similarity=0.485 Sum_probs=28.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~ 403 (641)
|+|+||||+|||++++.||...|++.++ ..+++.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is--~gdlLR 36 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLS--TGDMLR 36 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceec--ccHHHH
Confidence 8999999999999999999999876554 455553
No 406
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.70 E-value=0.0099 Score=56.19 Aligned_cols=71 Identities=30% Similarity=0.491 Sum_probs=42.8
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC--eEEeehh---hHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchh
Q 006534 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSAS---EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEID 434 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAIA~elg~p--fi~vs~s---e~v~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEID 434 (641)
..+...+.|.||+|+|||+|++++++..... -+.+++. .++.. ...+ .+-+-.+..|....|.++++||-.
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~-lS~G-~~~rv~laral~~~p~illlDEP~ 98 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ-LSGG-EKMRLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-CCHH-HHHHHHHHHHHhcCCCEEEEeCCc
Confidence 3445668999999999999999999975210 0111110 00000 1111 223444566667789999999964
No 407
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.69 E-value=0.017 Score=54.67 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=18.3
Q ss_pred CeeEEEcCCCCcHHH-HHHHHHHhc
Q 006534 366 RGVLLVGLPGTGKTL-LAKAVAGEA 389 (641)
Q Consensus 366 kgVLL~GPPGTGKT~-LAkAIA~el 389 (641)
+.+++.||+|||||. ++..+....
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 569999999999999 555554443
No 408
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.68 E-value=0.0048 Score=61.33 Aligned_cols=42 Identities=29% Similarity=0.511 Sum_probs=33.2
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhc-CCCeEEeehhhHHHH
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASEFVEL 404 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~el-g~pfi~vs~se~v~~ 404 (641)
..|.-+++.|+||+|||+++..+..+. +..++.++.+++...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 568889999999999999999999988 778889998887554
No 409
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.67 E-value=0.016 Score=65.81 Aligned_cols=157 Identities=24% Similarity=0.258 Sum_probs=81.3
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhC--CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEe-ehhhHH------H
Q 006534 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLG--ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC-SASEFV------E 403 (641)
Q Consensus 333 DV~G~~e~K~~L~eiv~~L~~p~~~~~lg--~~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~v-s~se~v------~ 403 (641)
.|.|++.+|+.+.-++-- .-++-..-| .+-.-+|||+|.|-+.|+-|.|++.+-+..-+-.. .++.=+ .
T Consensus 302 SI~GH~~vKkAillLLlG--GvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLG--GVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhc--cceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 588999999877655432 111111112 23345699999999999999999988653222111 000000 0
Q ss_pred HHhhcchHHHHH-HHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC
Q 006534 404 LYVGMGASRVRD-LFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 404 ~~vG~~~~~vr~-lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd 482 (641)
.-...|++++.. ..-.|. ..||+|||+|.+..-. ....++..+|.-..+-..--.-.-+...-|+||.|+..
T Consensus 380 tD~eTGERRLEAGAMVLAD---RGVVCIDEFDKMsDiD----RvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvy 452 (818)
T KOG0479|consen 380 TDQETGERRLEAGAMVLAD---RGVVCIDEFDKMSDID----RVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVY 452 (818)
T ss_pred eccccchhhhhcCceEEcc---CceEEehhcccccchh----HHHHHHHHhcceEEeEeccchhhhccceeeeeecCccc
Confidence 001123444321 111122 2499999999884211 01111111111100000000012245678999999742
Q ss_pred -------------CCChhhhCCCCcceEEEe
Q 006534 483 -------------VLDPALRRPGRFDRVVMV 500 (641)
Q Consensus 483 -------------~LDpALlRpgRFd~~I~v 500 (641)
.|+..|++ |||..+.+
T Consensus 453 G~Yd~~k~P~eNIgLpDSLLS--RFDLlFv~ 481 (818)
T KOG0479|consen 453 GQYDQSKTPMENIGLPDSLLS--RFDLLFVV 481 (818)
T ss_pred cccCCCCChhhccCCcHHHHh--hhcEEEEE
Confidence 56788998 99976544
No 410
>PRK13695 putative NTPase; Provisional
Probab=96.66 E-value=0.012 Score=56.93 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.5
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhc
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el 389 (641)
.++|.|++|+|||+|++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988764
No 411
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.66 E-value=0.0047 Score=66.48 Aligned_cols=70 Identities=27% Similarity=0.286 Sum_probs=47.2
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcch-----H---HHHH---HHHHHHhcCCceEEEcchh
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGA-----S---RVRD---LFARAKKEAPSIIFIDEID 434 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~vG~~~-----~---~vr~---lF~~A~~~aP~ILfIDEID 434 (641)
+.|.|.|+||+|||+|++++++..+.+++.-.+.++.....+... . .+.. ....+...++.+||+|- +
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~~~~~~~~a~~iif~D~-~ 241 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRYIDYAVRHAHKIAFIDT-D 241 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCeEEEcC-C
Confidence 469999999999999999999999999987777666654321110 0 1111 12333345567999995 5
Q ss_pred hh
Q 006534 435 AV 436 (641)
Q Consensus 435 aL 436 (641)
.+
T Consensus 242 ~~ 243 (325)
T TIGR01526 242 FI 243 (325)
T ss_pred hH
Confidence 44
No 412
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.65 E-value=0.013 Score=63.03 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=28.0
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeeh
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~ 398 (641)
..|.-++|.||+|+|||+++..+|..+ +..+.-+++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 456789999999999999999999865 444444444
No 413
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.65 E-value=0.0017 Score=62.90 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=27.7
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v 402 (641)
-+++.||||+|||++|+.++.++|.+.+ +..+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~--~~g~~~ 38 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHL--STGDLL 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE--eHHHHH
Confidence 4889999999999999999999886654 544443
No 414
>PRK14528 adenylate kinase; Provisional
Probab=96.64 E-value=0.0018 Score=63.98 Aligned_cols=30 Identities=33% Similarity=0.604 Sum_probs=27.2
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEe
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~v 396 (641)
.+++.||||+|||++|+.+|...+++.+++
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 489999999999999999999999887654
No 415
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.62 E-value=0.0057 Score=66.43 Aligned_cols=116 Identities=20% Similarity=0.170 Sum_probs=63.4
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---------CCCeEEeehhh------HHHHH--hhcc--------------
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE------FVELY--VGMG-------------- 409 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~el---------g~pfi~vs~se------~v~~~--vG~~-------------- 409 (641)
|.....-..|+||||||||.|+..+|-.. +...++++..+ +.... .|..
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 44555667899999999999999887432 24556665533 11110 0110
Q ss_pred -hH----HHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEec
Q 006534 410 -AS----RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (641)
Q Consensus 410 -~~----~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaAT 478 (641)
.. .+..+-.......+.+|+||-|-++....-.+ .+...++.+.+.+++..|..+....++.||.+.
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~--rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvTN 273 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTG--RGELAERQQKLAQMLSRLTKIAEEFNVAVYMTN 273 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccC--ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 01 11122222334568899999999886542111 112234455566766666554444455555443
No 416
>PRK14527 adenylate kinase; Provisional
Probab=96.62 E-value=0.0017 Score=63.96 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=28.9
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEe
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~v 396 (641)
+.|.-++++||||+|||++|+.+|.+.+.+.++.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 4566799999999999999999999998766543
No 417
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.61 E-value=0.0065 Score=58.90 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=31.4
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcC---CCeEEeehhhHHH
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVE 403 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~elg---~pfi~vs~se~v~ 403 (641)
..|.-++|.|+||+|||++|+++++++. ...+.++...+..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~ 48 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE 48 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh
Confidence 3566799999999999999999999875 3355566655544
No 418
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.60 E-value=0.013 Score=65.47 Aligned_cols=36 Identities=25% Similarity=0.196 Sum_probs=27.0
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEeehhh
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~el-----g~pfi~vs~se 400 (641)
++.++|.||+|+|||+++..+|..+ +..+..++++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 5678999999999999988887643 34555555554
No 419
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.59 E-value=0.0081 Score=58.26 Aligned_cols=26 Identities=31% Similarity=0.622 Sum_probs=22.7
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhc
Q 006534 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAIA~el 389 (641)
+..-+.|.||+|+|||+|.+.+++..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34558999999999999999999964
No 420
>PRK02496 adk adenylate kinase; Provisional
Probab=96.59 E-value=0.0018 Score=63.26 Aligned_cols=30 Identities=33% Similarity=0.583 Sum_probs=26.5
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEe
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~v 396 (641)
-+++.||||+|||++|+.+|...+.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 389999999999999999999998776654
No 421
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.59 E-value=0.0046 Score=58.51 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=28.6
Q ss_pred EEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHh
Q 006534 370 LVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (641)
Q Consensus 370 L~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~v 406 (641)
|.||||+|||++|+.+|.+.|. ..++..+++....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHHHH
Confidence 6899999999999999999875 5566777766544
No 422
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.59 E-value=0.0064 Score=60.56 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.0
Q ss_pred CeeEEEcCCCCcHHHHHHHHHH
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAG 387 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~ 387 (641)
.-++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4599999999999999999993
No 423
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.59 E-value=0.0019 Score=64.72 Aligned_cols=34 Identities=35% Similarity=0.652 Sum_probs=28.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~ 403 (641)
|+|.||||+|||++|+.+|...|++.++ ..+++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHHH
Confidence 7999999999999999999999877765 444543
No 424
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.58 E-value=0.011 Score=57.22 Aligned_cols=28 Identities=39% Similarity=0.589 Sum_probs=23.9
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhc
Q 006534 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAIA~el 389 (641)
..+..-+.|.||+|+|||+|++.+++..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445568999999999999999999975
No 425
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.57 E-value=0.0064 Score=64.14 Aligned_cols=37 Identities=22% Similarity=0.184 Sum_probs=28.6
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhc----C-CCeEEeehhh
Q 006534 364 PPRGVLLVGLPGTGKTLLAKAVAGEA----E-VPFISCSASE 400 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAIA~el----g-~pfi~vs~se 400 (641)
.++.++|+||+|+|||+++..+|..+ + ..+..++++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 46679999999999999999998765 3 5555565554
No 426
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.57 E-value=0.0018 Score=62.84 Aligned_cols=28 Identities=36% Similarity=0.692 Sum_probs=26.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~ 395 (641)
|-+.||||||||++|+.+|..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6688999999999999999999999986
No 427
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.0063 Score=57.86 Aligned_cols=73 Identities=30% Similarity=0.420 Sum_probs=44.1
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCCC--eEEeehhhHHH-------HHhh-----cchHHHHHHHHHHHhcCCceE
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSASEFVE-------LYVG-----MGASRVRDLFARAKKEAPSII 428 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~elg~p--fi~vs~se~v~-------~~vG-----~~~~~vr~lF~~A~~~aP~IL 428 (641)
.+...+.|.||+|+|||+|++++++..... -+.+++..... ..++ .+-..-+-.+..+....|.++
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEE
Confidence 344568999999999999999999976321 12333221110 0011 011223344555666678899
Q ss_pred EEcchhh
Q 006534 429 FIDEIDA 435 (641)
Q Consensus 429 fIDEIDa 435 (641)
++||...
T Consensus 103 ilDEp~~ 109 (157)
T cd00267 103 LLDEPTS 109 (157)
T ss_pred EEeCCCc
Confidence 9999753
No 428
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.56 E-value=0.027 Score=64.07 Aligned_cols=39 Identities=31% Similarity=0.371 Sum_probs=29.6
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc----CCCeEEeehh
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSAS 399 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~el----g~pfi~vs~s 399 (641)
|.+...-+||+|+||+|||+|+..++.+. |-+.++++..
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~e 69 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFE 69 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence 45556779999999999999999876532 5666666654
No 429
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.55 E-value=0.012 Score=57.73 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=22.6
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHh
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGE 388 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~e 388 (641)
++.--++|.||+||||++|.|++|.-
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhc
Confidence 44556999999999999999999984
No 430
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.55 E-value=0.017 Score=56.83 Aligned_cols=41 Identities=29% Similarity=0.416 Sum_probs=30.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcch
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGA 410 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~vG~~~ 410 (641)
|.|+|.+|+|||++++.++...+.+++ +++++.......+.
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i--~~D~~~~~~~~~~~ 42 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI--DADKIAHQVVEKGS 42 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE--eCCHHHHHHHhcCC
Confidence 689999999999999999998767765 55566554443333
No 431
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0069 Score=73.14 Aligned_cols=75 Identities=25% Similarity=0.368 Sum_probs=61.4
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhc-CCCeEEeehhhHHHHH-hhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcC
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASEFVELY-VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRD 441 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el-g~pfi~vs~se~v~~~-vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~ 441 (641)
.+|+.|..|.|-+.+..||-+.+ +.+......+.++... .......+..+|.+|+...||||||-++|.......
T Consensus 594 ~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~p 670 (1080)
T KOG0732|consen 594 RLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVIP 670 (1080)
T ss_pred HHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcCc
Confidence 37888999999999999998876 6777766666665543 455667788999999999999999999999876553
No 432
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.54 E-value=0.014 Score=57.46 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=18.5
Q ss_pred eEEEcCCCCcHHHHHHHHHH
Q 006534 368 VLLVGLPGTGKTLLAKAVAG 387 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~ 387 (641)
++|+||.|+|||++.|.++.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999983
No 433
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.53 E-value=0.012 Score=58.64 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.4
Q ss_pred CeeEEEcCCCCcHHHHHHHHH
Q 006534 366 RGVLLVGLPGTGKTLLAKAVA 386 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA 386 (641)
+.++|+||.|+|||+|.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999998
No 434
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.53 E-value=0.0038 Score=61.22 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=28.8
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~ 403 (641)
-++++|.||||||++++.++ ++|.+.++++ +|+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~--el~~ 35 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN--ELAK 35 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH--HHHH
Confidence 37899999999999999999 9998887665 5544
No 435
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.52 E-value=0.0065 Score=64.32 Aligned_cols=69 Identities=19% Similarity=0.358 Sum_probs=48.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcC----CCeEEee---------hhhHHH-HHhhcchHHHHHHHHHHHhcCCceEEEcch
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEAE----VPFISCS---------ASEFVE-LYVGMGASRVRDLFARAKKEAPSIIFIDEI 433 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg----~pfi~vs---------~se~v~-~~vG~~~~~vr~lF~~A~~~aP~ILfIDEI 433 (641)
||++||.|+|||+..-++-.+.| .+++.+. -..++. .-+|.......+.++.|....|+||++-|+
T Consensus 128 ILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlvGEm 207 (353)
T COG2805 128 ILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILVGEM 207 (353)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEecc
Confidence 77889999999999988888764 3333332 122222 345666666677777888889999999998
Q ss_pred hhh
Q 006534 434 DAV 436 (641)
Q Consensus 434 DaL 436 (641)
-.+
T Consensus 208 RD~ 210 (353)
T COG2805 208 RDL 210 (353)
T ss_pred ccH
Confidence 543
No 436
>PTZ00035 Rad51 protein; Provisional
Probab=96.50 E-value=0.013 Score=63.52 Aligned_cols=115 Identities=18% Similarity=0.197 Sum_probs=63.4
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhcC---------CCeEEeehhh------HHHHHh--hc---------------
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSASE------FVELYV--GM--------------- 408 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~elg---------~pfi~vs~se------~v~~~v--G~--------------- 408 (641)
|.....-+.|+||||+|||+|+..++.... ...++++..+ +..... +.
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 455556688999999999999999875432 3445555432 111100 00
Q ss_pred -chH---HHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEe
Q 006534 409 -GAS---RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (641)
Q Consensus 409 -~~~---~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaA 477 (641)
.+. .+..+........+.+|+||-|-++....-.+ .+...++.+.+.+++..+..+....++.|+.+
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSG--RGELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccC--cccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 011 11111222234567899999999986542110 11223445566777766655544455666544
No 437
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.50 E-value=0.007 Score=67.00 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=33.1
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006534 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~ 403 (641)
..+.|.|.|++|||||+|++++|...|.+++.--+.++..
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~ 257 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVF 257 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHH
Confidence 4567999999999999999999999998877655555554
No 438
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.50 E-value=0.0096 Score=57.62 Aligned_cols=28 Identities=32% Similarity=0.451 Sum_probs=24.1
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhc
Q 006534 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAIA~el 389 (641)
..+..-+.|.||+|+|||+|.+.+++..
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3455679999999999999999999975
No 439
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.50 E-value=0.022 Score=64.66 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=30.1
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHh----cCCCeEEeehh
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSAS 399 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~e----lg~pfi~vs~s 399 (641)
|......+|+.||||||||+||..++.+ .|-+.++++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 5566778999999999999999988543 25677666643
No 440
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.49 E-value=0.0066 Score=68.87 Aligned_cols=95 Identities=19% Similarity=0.267 Sum_probs=59.2
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCe-eEEEcCCCCcHHHHHHHHHHhcC---CCeEEeehh-hH
Q 006534 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRG-VLLVGLPGTGKTLLAKAVAGEAE---VPFISCSAS-EF 401 (641)
Q Consensus 327 ~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkg-VLL~GPPGTGKT~LAkAIA~elg---~pfi~vs~s-e~ 401 (641)
...+++++.-.++..+.+++++. .+.| +|++||+|+|||++.+++..+.+ ..++++... ++
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~--------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIR--------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 34577887666666666666553 2334 78999999999999998877763 344444221 11
Q ss_pred HHHH-----hhc-chHHHHHHHHHHHhcCCceEEEcchhh
Q 006534 402 VELY-----VGM-GASRVRDLFARAKKEAPSIIFIDEIDA 435 (641)
Q Consensus 402 v~~~-----vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDa 435 (641)
.-.. +.. ......+....+....|++|++.||-.
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 1100 010 012334556667778999999999843
No 441
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.49 E-value=0.03 Score=54.44 Aligned_cols=28 Identities=25% Similarity=0.515 Sum_probs=24.0
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhc
Q 006534 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAIA~el 389 (641)
..+...+.|.||+|+|||+|++++++..
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3455678999999999999999999974
No 442
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.49 E-value=0.011 Score=57.08 Aligned_cols=32 Identities=38% Similarity=0.422 Sum_probs=26.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehh
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~s 399 (641)
+++.||||+|||+++..+|..+ +..+..++++
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 6899999999999999998764 6667667665
No 443
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.46 E-value=0.0099 Score=64.52 Aligned_cols=117 Identities=15% Similarity=0.196 Sum_probs=66.3
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---------CCCeEEeehhh------HHHHH--hhc---------------
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE------FVELY--VGM--------------- 408 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~el---------g~pfi~vs~se------~v~~~--vG~--------------- 408 (641)
|.....-++++|+||+|||.|+..+|-.+ +.+.++++..+ +.+.. .+.
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 34555668899999999999999887432 23566666554 11110 000
Q ss_pred chHHHHHHH----HHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006534 409 GASRVRDLF----ARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 409 ~~~~vr~lF----~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN 479 (641)
....+..++ .......+.+|+||=|-++......+ .+...++.+.+.+++..|..+....++.|+.+..
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~--~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNq 271 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSG--RGELSARQMHLGKFLRSLQRLADEFGVAVVITNQ 271 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 011111122 22244568899999999987542111 1122344456777777766655555666665543
No 444
>PRK14529 adenylate kinase; Provisional
Probab=96.45 E-value=0.0096 Score=60.89 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=28.7
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~ 403 (641)
.|+|.||||+|||++++.+|..++.++++ ..+++.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is--~gdllr 36 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIE--SGAIFR 36 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcc--cchhhh
Confidence 38999999999999999999999987754 344443
No 445
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.45 E-value=0.026 Score=69.73 Aligned_cols=178 Identities=21% Similarity=0.245 Sum_probs=97.3
Q ss_pred CCCCCeeEEEcCCCCcHHHH-HHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcC---------C------
Q 006534 362 ARPPRGVLLVGLPGTGKTLL-AKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEA---------P------ 425 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~L-AkAIA~elg~pfi~vs~se~v~~~vG~~~~~vr~lF~~A~~~a---------P------ 425 (641)
...-++++++||||+|||+| .-++-.+.-..++.++-+... .++..++- +++-...- |
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~ls~-Ler~t~yy~~tg~~~l~PK~~vK~ 1564 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKLSV-LERETEYYPNTGVVRLYPKPVVKD 1564 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHHHH-HHhhceeeccCCeEEEccCcchhh
Confidence 34567999999999999996 456777777777777654221 11122222 22211110 1
Q ss_pred ceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCC--------CCcEEEEEecCCCCCC-----ChhhhCCC
Q 006534 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS--------NSAVIVLGATNRSDVL-----DPALRRPG 492 (641)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~--------~~~ViVIaATN~pd~L-----DpALlRpg 492 (641)
-|+|.|||. |...+. - ...+. --.+.+| .+-+||-. -.++++.+|+|++... ...++|
T Consensus 1565 lVLFcDeIn-Lp~~~~-y---~~~~v-I~FlR~l-~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r-- 1635 (3164)
T COG5245 1565 LVLFCDEIN-LPYGFE-Y---YPPTV-IVFLRPL-VERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIR-- 1635 (3164)
T ss_pred eEEEeeccC-Cccccc-c---CCCce-EEeeHHH-HHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhc--
Confidence 299999998 543321 0 01000 0011111 12233422 2579999999988533 233333
Q ss_pred CcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCC------------CCH--------HHHHHhCCCCCHHHHHHHHHHHH
Q 006534 493 RFDRVVMVETPDKIGREAILKVHVSKKELPLAKD------------IDL--------GDIASMTTGFTGADLANLVNEAA 552 (641)
Q Consensus 493 RFd~~I~v~~Pd~~eR~~IL~~~l~~~~l~l~~d------------vdl--------~~LA~~t~GfSgaDL~~Lv~eAa 552 (641)
+ ...+++..|.......|....+..--+ +.++ +.+ ..-.+...||+|+||...+..-.
T Consensus 1636 ~-~v~vf~~ype~~SL~~Iyea~l~~s~l-~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~ 1713 (3164)
T COG5245 1636 K-PVFVFCCYPELASLRNIYEAVLMGSYL-CFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIF 1713 (3164)
T ss_pred C-ceEEEecCcchhhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHH
Confidence 1 235778899999888888876654211 1111 000 00112346899999999887655
Q ss_pred HHHH
Q 006534 553 LLAG 556 (641)
Q Consensus 553 ~~A~ 556 (641)
-+|.
T Consensus 1714 ~yae 1717 (3164)
T COG5245 1714 GYAE 1717 (3164)
T ss_pred hHHh
Confidence 5543
No 446
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.45 E-value=0.0037 Score=63.38 Aligned_cols=133 Identities=25% Similarity=0.304 Sum_probs=60.4
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH-HhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCccc
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFR 445 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~-~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~ 445 (641)
-++|+||+|||||.+|=++|++.|.|++..+.-..... .+|.+... ..-+ ...+ =+|+||-..--
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~-~~el----~~~~-RiyL~~r~l~~-------- 68 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPT-PSEL----KGTR-RIYLDDRPLSD-------- 68 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT----SGGG----TT-E-EEES----GGG--------
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCC-HHHH----cccc-eeeeccccccC--------
Confidence 36899999999999999999999999999986554432 23322111 1111 1112 37888643221
Q ss_pred ccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhC---CCCcce-EEEecCCCHHHHHHHHHHHHh
Q 006534 446 IVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRR---PGRFDR-VVMVETPDKIGREAILKVHVS 517 (641)
Q Consensus 446 ~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlR---pgRFd~-~I~v~~Pd~~eR~~IL~~~l~ 517 (641)
+.-..++....|+..++.+....++|+=+-+.. .|..-..+ ...|.. +..++.||.+.-..-.+...+
T Consensus 69 --G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSIS--Ll~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~ 140 (233)
T PF01745_consen 69 --GIINAEEAHERLISEVNSYSAHGGLILEGGSIS--LLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVR 140 (233)
T ss_dssp ---S--HHHHHHHHHHHHHTTTTSSEEEEEE--HH--HHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHH
T ss_pred --CCcCHHHHHHHHHHHHHhccccCceEEeCchHH--HHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHH
Confidence 112234455667777777777555555444421 01100111 012333 345567776655544444443
No 447
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.42 E-value=0.0022 Score=57.68 Aligned_cols=22 Identities=41% Similarity=0.721 Sum_probs=20.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~el 389 (641)
|+|.|+||+|||++|+.++.++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 448
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.42 E-value=0.038 Score=58.10 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=28.8
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehh
Q 006534 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~s 399 (641)
...|+-++|+||+|+|||+++..+|..+ |....-++++
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3457789999999999999999998765 5455545544
No 449
>PRK14700 recombination factor protein RarA; Provisional
Probab=96.39 E-value=0.029 Score=59.55 Aligned_cols=141 Identities=17% Similarity=0.257 Sum_probs=87.0
Q ss_pred CCcEEEEEec--CCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC------CCCCCCCCCHHHHHHhCCCCC
Q 006534 469 NSAVIVLGAT--NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK------ELPLAKDIDLGDIASMTTGFT 540 (641)
Q Consensus 469 ~~~ViVIaAT--N~pd~LDpALlRpgRFd~~I~v~~Pd~~eR~~IL~~~l~~~------~l~l~~dvdl~~LA~~t~GfS 540 (641)
++.|++|+|| |+.-.+.++|++ |- +++.+.+++.++...+++..+... .+.++++ .++.|+..+.| .
T Consensus 6 ~G~i~LIGATTENP~f~vn~ALlS--R~-~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~-al~~ia~~a~G-D 80 (300)
T PRK14700 6 SGKIILIGATTENPTYYLNDALVS--RL-FILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDG-LYNAMHNYNEG-D 80 (300)
T ss_pred CCcEEEEeecCCCccceecHhhhh--hh-heeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHH-HHHHHHHhcCC-H
Confidence 5668888887 666799999999 53 488999999999999999988642 1334443 36777777666 4
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcchhhhhccCChhHHHHHHHHHH-----HHHHHHhHHhhcCCCC
Q 006534 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEA-----GHAVVGTAVASLLPGQ 615 (641)
Q Consensus 541 gaDL~~Lv~eAa~~A~r~~~~~It~~d~~~Al~rvi~g~~~~~~~ls~~ek~~va~hEa-----ghAlv~~~l~~~~~~~ 615 (641)
.|-.-|+++.|...+...+...||.+++.+++.+......+.. ...=..+.|+|+. -.|-+- .++.|+.++
T Consensus 81 aR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~g---d~HYd~iSAf~KSiRGSDpDAAlY-yLArml~~G 156 (300)
T PRK14700 81 CRKILNLLERMFLISTRGDEIYLNKELFDQAVGETSRDFHREG---KEFYEQLSAFHKSVRGTDPDAAIF-WLSVMLDNG 156 (300)
T ss_pred HHHHHHHHHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCc---chhHHHHHHHHHHhhcCCccHHHH-HHHHHHHcC
Confidence 4444455555443222222234899999988876654433321 1222345666664 123332 244555555
Q ss_pred -Cce
Q 006534 616 -PRV 618 (641)
Q Consensus 616 -~~v 618 (641)
||.
T Consensus 157 EDp~ 160 (300)
T PRK14700 157 VDPL 160 (300)
T ss_pred CCHH
Confidence 664
No 450
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.38 E-value=0.0074 Score=64.77 Aligned_cols=116 Identities=15% Similarity=0.161 Sum_probs=62.7
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhcC---------CCeEEeehhhH------HHHH--hhcc--------------
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSASEF------VELY--VGMG-------------- 409 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~elg---------~pfi~vs~se~------v~~~--vG~~-------------- 409 (641)
|..+..-+.++||||+|||+|+..+|..+. ...++++..+- .... .+..
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 455566688999999999999999876321 24566655441 1100 0100
Q ss_pred -hHH----HHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEec
Q 006534 410 -ASR----VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (641)
Q Consensus 410 -~~~----vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaAT 478 (641)
... +..+........+.+|+||-|-++......+ .+....+.+.+.+++..+..+....++.|+.+.
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~--~~~~~~rq~~l~~~~~~L~~la~~~~vavv~tN 243 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSG--RGELSARQMHLARFLRSLQRLADEFGVAVVITN 243 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCC--cchHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 111 1111222234568899999999986432111 011123334456666666555444455555443
No 451
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.38 E-value=0.015 Score=59.38 Aligned_cols=21 Identities=38% Similarity=0.330 Sum_probs=18.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHh
Q 006534 368 VLLVGLPGTGKTLLAKAVAGE 388 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~e 388 (641)
.+|+||||+|||+|+-.+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999998853
No 452
>PRK01184 hypothetical protein; Provisional
Probab=96.35 E-value=0.0031 Score=61.45 Aligned_cols=29 Identities=34% Similarity=0.636 Sum_probs=25.4
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEe
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~v 396 (641)
-|+|+||||+||||+++ ++.+.|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 48899999999999998 788999888655
No 453
>PHA02774 E1; Provisional
Probab=96.34 E-value=0.0052 Score=70.37 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=28.0
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCCCeEE-eeh
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-CSA 398 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~-vs~ 398 (641)
.+.++|+||||||||++|-++++.++...+. ++.
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 3589999999999999999999998655544 443
No 454
>PRK04182 cytidylate kinase; Provisional
Probab=96.34 E-value=0.0034 Score=60.26 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=26.7
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~ 395 (641)
.|+|.|+||+|||++|+++|..++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 37899999999999999999999998875
No 455
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.33 E-value=0.008 Score=58.66 Aligned_cols=73 Identities=25% Similarity=0.330 Sum_probs=40.9
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhc-------------CCCeEEeehhhHH----HHH---------------hh-------
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEA-------------EVPFISCSASEFV----ELY---------------VG------- 407 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el-------------g~pfi~vs~se~v----~~~---------------vG------- 407 (641)
-++|+||||+|||+++-.++... +.++++++...-. ..+ ..
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 113 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCI 113 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccc
Confidence 48899999999999999987753 2355666443211 111 00
Q ss_pred ----------cchHHHHHHHHHHHh-cCCceEEEcchhhhhhh
Q 006534 408 ----------MGASRVRDLFARAKK-EAPSIIFIDEIDAVAKS 439 (641)
Q Consensus 408 ----------~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~ 439 (641)
.....+..+.+.+.. ..|.+|+||-+..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 114 RLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp ---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 011223445555555 56889999999999754
No 456
>PRK12338 hypothetical protein; Provisional
Probab=96.33 E-value=0.08 Score=56.99 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=27.4
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 006534 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAIA~elg~pfi 394 (641)
.|.-+++.|+||+|||++|+++|..++.+.+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 4667999999999999999999999987653
No 457
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.32 E-value=0.012 Score=58.06 Aligned_cols=71 Identities=24% Similarity=0.172 Sum_probs=42.4
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhcCC--CeEEeehhhH--HHHHh-hcchHHHHHHHHHHHhcCCceEEEcchh
Q 006534 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASEF--VELYV-GMGASRVRDLFARAKKEAPSIIFIDEID 434 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAIA~elg~--pfi~vs~se~--v~~~v-G~~~~~vr~lF~~A~~~aP~ILfIDEID 434 (641)
+..-+.|.||+|+|||+|++.+++.... --+.+++..+ ..... -.+-.+-+-.+..|....|.++++||--
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 3456889999999999999999996421 0111221100 00000 1112233445666667789999999963
No 458
>PLN02199 shikimate kinase
Probab=96.31 E-value=0.014 Score=62.13 Aligned_cols=38 Identities=32% Similarity=0.589 Sum_probs=31.8
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~ 404 (641)
.++|+|.|.+|+|||++++.+|+.+|.+|+.. +.+++.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDt--D~lIe~ 139 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDC--DTLIEQ 139 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEeh--HHHHHH
Confidence 35799999999999999999999999999855 344443
No 459
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.31 E-value=0.029 Score=62.67 Aligned_cols=196 Identities=16% Similarity=0.219 Sum_probs=96.6
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH-------H--------Hhh-c---c-hHHHHHHHHH
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE-------L--------YVG-M---G-ASRVRDLFAR 419 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~-------~--------~vG-~---~-~~~vr~lF~~ 419 (641)
..|.-++|+|++|+||||++..+|..+ |....-++++.+.. . +.+ . . ....++.++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 457789999999999999999998765 55666566543210 0 000 0 0 1223345555
Q ss_pred HHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCC--hhhhCCCCcceE
Q 006534 420 AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD--PALRRPGRFDRV 497 (641)
Q Consensus 420 A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LD--pALlRpgRFd~~ 497 (641)
++...-.+||||=...+. .+ +..+.++....+...+...++|+-++.-.+.++ .++.....++ .
T Consensus 178 ~~~~~~DvViIDTaGr~~----------~d---~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~-g 243 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRHK----------QE---DSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVG-S 243 (429)
T ss_pred HHhCCCCEEEEECCCCCc----------ch---HHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCc-E
Confidence 655555688888653321 11 223333333333223333455555443322222 1221211223 3
Q ss_pred EEecCCCHHHHHH-HHHHHHhcCCCC---------C--CCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH---------HH
Q 006534 498 VMVETPDKIGREA-ILKVHVSKKELP---------L--AKDIDLGDIASMTTGFTGADLANLVNEAALL---------AG 556 (641)
Q Consensus 498 I~v~~Pd~~eR~~-IL~~~l~~~~l~---------l--~~dvdl~~LA~~t~GfSgaDL~~Lv~eAa~~---------A~ 556 (641)
+-+...|...|-. +|..... .+.| + -...+.+.++.+.-|. +|+..|++.|... +.
T Consensus 244 ~IlTKlD~~argG~aLs~~~~-t~~PI~fig~Ge~v~Dle~f~p~~~~~rilgm--gDi~~L~ek~~~~~~~~~~~~~~~ 320 (429)
T TIGR01425 244 VIITKLDGHAKGGGALSAVAA-TKSPIIFIGTGEHIDDFEIFKTQPFISKLLGM--GDIEGLIDKVQDLKLDDNEKALIE 320 (429)
T ss_pred EEEECccCCCCccHHhhhHHH-HCCCeEEEcCCCChhhcCcCChHHHHHHHhcC--CCcHHHHHHHHHhhhHHHHHHHHH
Confidence 3455566555542 2332211 1112 1 1123455666666553 5777777755332 11
Q ss_pred hcCCccccHHHHHHHHHHH
Q 006534 557 RLNKVVVEKIDFIHAVERS 575 (641)
Q Consensus 557 r~~~~~It~~d~~~Al~rv 575 (641)
+-.+...+.+||.+-++..
T Consensus 321 k~~~~~f~l~D~~~q~~~i 339 (429)
T TIGR01425 321 KLKEGTFTLRDMYEQFQNL 339 (429)
T ss_pred HHHhCCCCHHHHHHHHHHH
Confidence 1123456888888777653
No 460
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.29 E-value=0.0037 Score=59.60 Aligned_cols=29 Identities=38% Similarity=0.629 Sum_probs=26.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEe
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg~pfi~v 396 (641)
|.|+|++|+|||++|+.+|..++.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999987653
No 461
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.28 E-value=0.01 Score=65.55 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=22.5
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcC
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEAE 390 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~elg 390 (641)
..-++|+||||+|||+|++.+++...
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc
Confidence 34499999999999999999999753
No 462
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.28 E-value=0.016 Score=56.09 Aligned_cols=40 Identities=28% Similarity=0.352 Sum_probs=30.7
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH
Q 006534 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~ 403 (641)
.+.-+.|.|+||+|||++|+++++.+ +..+..++.+.+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~ 45 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRT 45 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHH
Confidence 34568899999999999999999886 44566666655433
No 463
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.22 E-value=0.017 Score=55.99 Aligned_cols=27 Identities=33% Similarity=0.324 Sum_probs=23.1
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhc
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~el 389 (641)
.+...+.|.||+|+|||+|++.+++..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568999999999999999999964
No 464
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.019 Score=66.93 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=23.6
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHH
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAG 387 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~ 387 (641)
..+|...+-|+||+|+|||++|.-+-+
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~r 516 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLR 516 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 356777899999999999999998876
No 465
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.21 E-value=0.0081 Score=62.55 Aligned_cols=116 Identities=19% Similarity=0.207 Sum_probs=64.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcC---------CCeEEeehhh---------HHHHHhhc--------------chHHHHH
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSASE---------FVELYVGM--------------GASRVRD 415 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~elg---------~pfi~vs~se---------~v~~~vG~--------------~~~~vr~ 415 (641)
.=|+||||+|||.|+-.+|-.+. ...++++... +.+.+.-. ....+..
T Consensus 41 tEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~ 120 (256)
T PF08423_consen 41 TEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLE 120 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHH
T ss_pred EEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHH
Confidence 33999999999999998876542 3356665432 11111000 0011112
Q ss_pred HH----HHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCC
Q 006534 416 LF----ARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (641)
Q Consensus 416 lF----~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LD 485 (641)
++ .........+|+||-|-++.+..-.+ .+...++.+.+..++..|..+....++.|+.+..-...++
T Consensus 121 ~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~--~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~ 192 (256)
T PF08423_consen 121 LLEQLPKLLSESKIKLIVIDSIAALFRSEFSG--RGDLAERQRMLARLARILKRLARKYNIAVVVTNQVTTKID 192 (256)
T ss_dssp HHHHHHHHHHHSCEEEEEEETSSHHHHHHSGS--TTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT
T ss_pred HHHHHHhhccccceEEEEecchHHHHHHHHcc--chhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceeeecCC
Confidence 22 22223456699999999998653211 1233456677888777777666666667765544333444
No 466
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.20 E-value=0.018 Score=55.45 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.0
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHH
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAG 387 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~ 387 (641)
++..+++||.|+|||++.++++-
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999753
No 467
>PRK10263 DNA translocase FtsK; Provisional
Probab=96.18 E-value=0.03 Score=69.12 Aligned_cols=74 Identities=16% Similarity=0.290 Sum_probs=51.2
Q ss_pred eEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC--CCChhhhCCCCcceEEEecCCC
Q 006534 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD--VLDPALRRPGRFDRVVMVETPD 504 (641)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd--~LDpALlRpgRFd~~I~v~~Pd 504 (641)
||+|||+..|.... ..+.+..+..|.. .....+|.+|.+|.+|+ .|...++. -|..+|-+..-+
T Consensus 1143 VVIIDE~AdLm~~~--------~kevE~lI~rLAq----kGRAaGIHLILATQRPsvDVItg~IKA--N~ptRIAfrVsS 1208 (1355)
T PRK10263 1143 VVLVDEFADLMMTV--------GKKVEELIARLAQ----KARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSS 1208 (1355)
T ss_pred EEEEcChHHHHhhh--------hHHHHHHHHHHHH----HhhhcCeEEEEEecCcccccchHHHHh--hccceEEEEcCC
Confidence 79999998886421 1233334444333 33457899999999985 67666665 677788888888
Q ss_pred HHHHHHHHHH
Q 006534 505 KIGREAILKV 514 (641)
Q Consensus 505 ~~eR~~IL~~ 514 (641)
..+-+.||..
T Consensus 1209 ~~DSrtILd~ 1218 (1355)
T PRK10263 1209 KIDSRTILDQ 1218 (1355)
T ss_pred HHHHHHhcCC
Confidence 8888888754
No 468
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=96.18 E-value=0.034 Score=55.24 Aligned_cols=38 Identities=29% Similarity=0.295 Sum_probs=29.7
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHh
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~v 406 (641)
.-|.|+|++|+|||++++.++. +|++++ +++++.....
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i--~~D~~~~~~~ 40 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVI--DADAIAHEVV 40 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEE--EecHHHHHHh
Confidence 3589999999999999999998 787665 4555655443
No 469
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.18 E-value=0.014 Score=72.60 Aligned_cols=135 Identities=21% Similarity=0.255 Sum_probs=88.7
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhH------HHHHhhcchH---HHHHHHHHHHhcCCceEEEcchhhh
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF------VELYVGMGAS---RVRDLFARAKKEAPSIIFIDEIDAV 436 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~------v~~~vG~~~~---~vr~lF~~A~~~aP~ILfIDEIDaL 436 (641)
-++||-||..+|||.+++.+|.+.|-.|+.++.-+. +..|+..... --..++-.|...+. -|++||+...
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~Gy-WIVLDELNLA 967 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGY-WIVLDELNLA 967 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCc-EEEeeccccC
Confidence 359999999999999999999999999999976543 3334322211 11234445554443 8899998543
Q ss_pred hhhcCCcccccchhHHHHHHHHHHhhhcCC---------CCCCcEEEEEecCCCC------CCChhhhCCCCcceEEEec
Q 006534 437 AKSRDGRFRIVSNDEREQTLNQLLTEMDGF---------DSNSAVIVLGATNRSD------VLDPALRRPGRFDRVVMVE 501 (641)
Q Consensus 437 ~~~r~~~~~~~~~~e~~~~LnqLL~emdg~---------~~~~~ViVIaATN~pd------~LDpALlRpgRFd~~I~v~ 501 (641)
. ...-..||.||..-..+ .+.+.+.+.||-|+|. .|..|++. ||- .++|+
T Consensus 968 p------------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFl-E~hFd 1032 (4600)
T COG5271 968 P------------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFL-EMHFD 1032 (4600)
T ss_pred c------------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhH-hhhcc
Confidence 2 11234566666542221 2345678888889873 56777776 885 55666
Q ss_pred CCCHHHHHHHHHHHH
Q 006534 502 TPDKIGREAILKVHV 516 (641)
Q Consensus 502 ~Pd~~eR~~IL~~~l 516 (641)
.-..++...||+..+
T Consensus 1033 dipedEle~ILh~rc 1047 (4600)
T COG5271 1033 DIPEDELEEILHGRC 1047 (4600)
T ss_pred cCcHHHHHHHHhccC
Confidence 666678888877654
No 470
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.17 E-value=0.0075 Score=56.90 Aligned_cols=29 Identities=31% Similarity=0.290 Sum_probs=25.3
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhcCCC
Q 006534 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVP 392 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAIA~elg~p 392 (641)
+..-++|.|+.|+|||+++|.+++.++.+
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 34568999999999999999999998864
No 471
>PF13245 AAA_19: Part of AAA domain
Probab=96.17 E-value=0.0069 Score=51.51 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=20.6
Q ss_pred eEEEcCCCCcHH-HHHHHHHHhc------CCCeEEeeh
Q 006534 368 VLLVGLPGTGKT-LLAKAVAGEA------EVPFISCSA 398 (641)
Q Consensus 368 VLL~GPPGTGKT-~LAkAIA~el------g~pfi~vs~ 398 (641)
+++.|||||||| ++++.++... +-.++.+..
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 556999999999 5566665544 444555543
No 472
>PRK08233 hypothetical protein; Provisional
Probab=96.17 E-value=0.0052 Score=59.19 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=26.0
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcC-CCeEEeeh
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEAE-VPFISCSA 398 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~elg-~pfi~vs~ 398 (641)
.-|.+.|+||+||||+|+.++..++ .+.+..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 4477889999999999999999885 44544443
No 473
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.17 E-value=0.019 Score=56.13 Aligned_cols=27 Identities=41% Similarity=0.465 Sum_probs=23.3
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhc
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~el 389 (641)
.+...+.|.||+|+|||+|.+.+++..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568999999999999999999864
No 474
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.17 E-value=0.036 Score=54.87 Aligned_cols=27 Identities=33% Similarity=0.573 Sum_probs=23.8
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhc
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~el 389 (641)
.+...+.|.||+|+|||+|.+.+++..
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 445669999999999999999999976
No 475
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.14 E-value=0.027 Score=64.11 Aligned_cols=78 Identities=27% Similarity=0.278 Sum_probs=49.6
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHh------hc----------------------c
Q 006534 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV------GM----------------------G 409 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v~~~v------G~----------------------~ 409 (641)
|......++++||||+|||+|+..++.+. |-+.++++..+-.+.+. |. .
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 45556678999999999999999987653 66666665432211100 00 0
Q ss_pred hHHHHHHHHHHHhcCCceEEEcchhhhhh
Q 006534 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAK 438 (641)
Q Consensus 410 ~~~vr~lF~~A~~~aP~ILfIDEIDaL~~ 438 (641)
...+..+.+......|.+|+||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 12223333344556788999999998864
No 476
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.14 E-value=0.017 Score=68.57 Aligned_cols=97 Identities=23% Similarity=0.353 Sum_probs=56.7
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhc---C--CCeEEeehh----hHHHHHhhcchHHHHHHHHHHH----------hcCCce
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEA---E--VPFISCSAS----EFVELYVGMGASRVRDLFARAK----------KEAPSI 427 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el---g--~pfi~vs~s----e~v~~~vG~~~~~vr~lF~~A~----------~~aP~I 427 (641)
-++|.|+||||||++++++...+ + .+++-+... .-+....|..+..+..++.... .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 58999999999999999986643 4 445544322 1122222333344444443211 123469
Q ss_pred EEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC
Q 006534 428 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (641)
Q Consensus 428 LfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~p 481 (641)
|+|||+..+. ...+..|+..+ .....+++++-.+..
T Consensus 420 lIvDEaSMvd---------------~~~~~~Ll~~~---~~~~rlilvGD~~QL 455 (720)
T TIGR01448 420 LIVDESSMMD---------------TWLALSLLAAL---PDHARLLLVGDTDQL 455 (720)
T ss_pred EEEeccccCC---------------HHHHHHHHHhC---CCCCEEEEECccccc
Confidence 9999997663 12345555543 345567777766654
No 477
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.12 E-value=0.049 Score=65.22 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=21.1
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHh
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~e 388 (641)
..++|+||.|+|||++.|.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 56999999999999999999876
No 478
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.11 E-value=0.017 Score=60.78 Aligned_cols=70 Identities=21% Similarity=0.290 Sum_probs=37.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHH-H--HH-hhcchHHHHHHHHHHH---hcCCceEEEcchhhhh
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV-E--LY-VGMGASRVRDLFARAK---KEAPSIIFIDEIDAVA 437 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~se~v-~--~~-vG~~~~~vr~lF~~A~---~~aP~ILfIDEIDaL~ 437 (641)
|+|+|-||+|||++|+.++..+ +...+.++...+. . .| ....++.+|..+..+- -....||++|+...+-
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYiK 83 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYIK 83 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---SH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchHH
Confidence 7899999999999999998864 5677777755443 1 11 1223455554443331 1234699999987763
No 479
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.10 E-value=0.013 Score=63.51 Aligned_cols=82 Identities=24% Similarity=0.352 Sum_probs=49.9
Q ss_pred cc-cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-CCCeEEeehhhHHHHHhhc
Q 006534 331 FA-DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASEFVELYVGM 408 (641)
Q Consensus 331 f~-DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~el-g~pfi~vs~se~v~~~vG~ 408 (641)
|+ ++.|++++.+ ++|++++...+ -....-+-++|.||+|+|||+|++.+..-+ ..+++.+..+-..+...+.
T Consensus 59 f~~~~~G~~~~i~---~lV~~fk~AA~---g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L 132 (358)
T PF08298_consen 59 FEDEFYGMEETIE---RLVNYFKSAAQ---GLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHL 132 (358)
T ss_pred ccccccCcHHHHH---HHHHHHHHHHh---ccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhh
Confidence 45 8999998765 55556554322 122334567799999999999999998755 2366665444333322222
Q ss_pred chHHHHHHHH
Q 006534 409 GASRVRDLFA 418 (641)
Q Consensus 409 ~~~~vr~lF~ 418 (641)
-...+|+.|.
T Consensus 133 ~P~~~r~~~~ 142 (358)
T PF08298_consen 133 FPKELRREFE 142 (358)
T ss_pred CCHhHHHHHH
Confidence 2344454443
No 480
>PRK14526 adenylate kinase; Provisional
Probab=96.10 E-value=0.0052 Score=62.20 Aligned_cols=35 Identities=29% Similarity=0.534 Sum_probs=28.4
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~ 403 (641)
.++|.||||+|||++++.+|+..+.++++ ..+++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is--~G~llr 36 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS--TGDLFR 36 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee--cChHHH
Confidence 38899999999999999999998876654 455543
No 481
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.09 E-value=0.011 Score=69.73 Aligned_cols=26 Identities=42% Similarity=0.662 Sum_probs=22.2
Q ss_pred CCCCe--eEEEcCCCCcHHHHHHHHHHh
Q 006534 363 RPPRG--VLLVGLPGTGKTLLAKAVAGE 388 (641)
Q Consensus 363 ~~pkg--VLL~GPPGTGKT~LAkAIA~e 388 (641)
..+.| |.+.|++|||||||+|.+.+-
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34444 999999999999999999984
No 482
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.07 E-value=0.12 Score=58.32 Aligned_cols=31 Identities=35% Similarity=0.486 Sum_probs=28.1
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF 393 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~elg~pf 393 (641)
+.|.-+++.|+||+|||++|..+|..++...
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ 283 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITR 283 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 4588899999999999999999999999863
No 483
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.07 E-value=0.0085 Score=60.55 Aligned_cols=23 Identities=52% Similarity=0.531 Sum_probs=18.6
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhc
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el 389 (641)
-+.+.||.|||||+||-+.|-++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 48999999999999999998754
No 484
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.07 E-value=0.0062 Score=50.44 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~el 389 (641)
+.+.|+||+|||+++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999985
No 485
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.06 E-value=0.04 Score=54.41 Aligned_cols=26 Identities=38% Similarity=0.584 Sum_probs=22.4
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHh
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGE 388 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~e 388 (641)
.+...+.|.||+|+|||+|++.+++.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34456899999999999999999974
No 486
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.04 Score=60.72 Aligned_cols=78 Identities=26% Similarity=0.423 Sum_probs=59.6
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhc--CCCeEEeehhhHHHHHh------h--------cchHHHHHHHHHHHhcCCc
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA--EVPFISCSASEFVELYV------G--------MGASRVRDLFARAKKEAPS 426 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~el--g~pfi~vs~se~v~~~v------G--------~~~~~vr~lF~~A~~~aP~ 426 (641)
-+..-+|+-|.||.|||+|.-.+|..+ ..+.+++++.+-..... | ..+..+.++++.+....|.
T Consensus 91 V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~ 170 (456)
T COG1066 91 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPD 170 (456)
T ss_pred ccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCC
Confidence 344457888999999999988887654 33899999887655321 1 1355678888999999999
Q ss_pred eEEEcchhhhhhhc
Q 006534 427 IIFIDEIDAVAKSR 440 (641)
Q Consensus 427 ILfIDEIDaL~~~r 440 (641)
+++||-|..+....
T Consensus 171 lvVIDSIQT~~s~~ 184 (456)
T COG1066 171 LVVIDSIQTLYSEE 184 (456)
T ss_pred EEEEeccceeeccc
Confidence 99999999987554
No 487
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.05 E-value=0.011 Score=64.71 Aligned_cols=69 Identities=23% Similarity=0.285 Sum_probs=43.1
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcC------CCeEEeeh-hhHHH------------HHhhcchHHHHHHHHHHHhcCCc
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEAE------VPFISCSA-SEFVE------------LYVGMGASRVRDLFARAKKEAPS 426 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~elg------~pfi~vs~-se~v~------------~~vG~~~~~vr~lF~~A~~~aP~ 426 (641)
..++++||+|+|||+++++++++.. ..++.+.- -++.- .-++.........+..+....|.
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd 214 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKPH 214 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCCC
Confidence 4589999999999999999998752 22333211 11100 00111112345556667778999
Q ss_pred eEEEcchh
Q 006534 427 IIFIDEID 434 (641)
Q Consensus 427 ILfIDEID 434 (641)
++++.|+.
T Consensus 215 ~i~vGEiR 222 (358)
T TIGR02524 215 AILVGEAR 222 (358)
T ss_pred EEeeeeeC
Confidence 99999974
No 488
>PRK10436 hypothetical protein; Provisional
Probab=96.03 E-value=0.016 Score=65.45 Aligned_cols=94 Identities=14% Similarity=0.250 Sum_probs=58.9
Q ss_pred ccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC---CCeEEeeh-hhHHH
Q 006534 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSA-SEFVE 403 (641)
Q Consensus 328 ~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg---~pfi~vs~-se~v~ 403 (641)
..+++++.-.++..+.+++++.. +..-+|++||+|+|||++..++..+.+ ..++++.- -++.-
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~-------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l 260 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ-------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPL 260 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh-------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccC
Confidence 45788877666666666665531 223488999999999999988877764 33444321 11110
Q ss_pred H-----Hhh-cchHHHHHHHHHHHhcCCceEEEcchh
Q 006534 404 L-----YVG-MGASRVRDLFARAKKEAPSIIFIDEID 434 (641)
Q Consensus 404 ~-----~vG-~~~~~vr~lF~~A~~~aP~ILfIDEID 434 (641)
. .++ .........+..+..+.|+||+|.||-
T Consensus 261 ~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 261 AGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 0 011 111235666777778899999999984
No 489
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.01 E-value=0.0065 Score=59.67 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=25.0
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~elg~pfi 394 (641)
..++|.||+|+|||+|++.+++..+.+|+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 45889999999999999999998776543
No 490
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.01 E-value=0.032 Score=54.43 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=23.5
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhc
Q 006534 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAIA~el 389 (641)
.+..-+.|.||+|+|||+|++.+++..
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445568999999999999999999965
No 491
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=95.99 E-value=0.0077 Score=65.33 Aligned_cols=70 Identities=27% Similarity=0.368 Sum_probs=47.6
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCC--CeEEeeh-hhHH-------HHH------hhcchHHHHHHHHHHHhcCCceE
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSA-SEFV-------ELY------VGMGASRVRDLFARAKKEAPSII 428 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~elg~--pfi~vs~-se~v-------~~~------vG~~~~~vr~lF~~A~~~aP~IL 428 (641)
..++++.|++|+|||++++++.++..- ..+.+.. .++. ... .|.+.-...+++..+....|+.|
T Consensus 178 ~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~I 257 (340)
T TIGR03819 178 RLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRI 257 (340)
T ss_pred CCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCCCeE
Confidence 357999999999999999999987531 2222211 1111 000 12234456788899999999999
Q ss_pred EEcchh
Q 006534 429 FIDEID 434 (641)
Q Consensus 429 fIDEID 434 (641)
++.|+-
T Consensus 258 ivGEiR 263 (340)
T TIGR03819 258 VVGEVR 263 (340)
T ss_pred EEeCcC
Confidence 999983
No 492
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=95.98 E-value=0.15 Score=52.85 Aligned_cols=149 Identities=12% Similarity=0.071 Sum_probs=96.7
Q ss_pred CCCCeeEEEcCCC-CcHHHHHHHHHHhcCC---------CeEEeehhhHHHH-HhhcchHHHHHHHHHHHh----cCCce
Q 006534 363 RPPRGVLLVGLPG-TGKTLLAKAVAGEAEV---------PFISCSASEFVEL-YVGMGASRVRDLFARAKK----EAPSI 427 (641)
Q Consensus 363 ~~pkgVLL~GPPG-TGKT~LAkAIA~elg~---------pfi~vs~se~v~~-~vG~~~~~vr~lF~~A~~----~aP~I 427 (641)
+.....|+.|..+ +||..++.-++..+.. .++.+....-... -..-+...+|++-+.+.. +..-|
T Consensus 13 kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 13 KLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred cchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEE
Confidence 3445699999998 9999998887775422 2233322100000 001245667776665542 23459
Q ss_pred EEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHH
Q 006534 428 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIG 507 (641)
Q Consensus 428 LfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViVIaATN~pd~LDpALlRpgRFd~~I~v~~Pd~~e 507 (641)
++||++|.+.. +..|.||..++. +..++++|..|+.++.|.|.+++ |. ..+.++.|+...
T Consensus 93 iII~~ae~mt~---------------~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~ 152 (263)
T PRK06581 93 AIIYSAELMNL---------------NAANSCLKILED--APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHA 152 (263)
T ss_pred EEEechHHhCH---------------HHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHH
Confidence 99999999853 344889999884 55667777778788899999988 53 378899998877
Q ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 006534 508 REAILKVHVSKKELPLAKDIDLGDIASM 535 (641)
Q Consensus 508 R~~IL~~~l~~~~l~l~~dvdl~~LA~~ 535 (641)
-.+.....+. +..++..++-|.+.
T Consensus 153 ~~e~~~~~~~----p~~~~~~l~~i~~~ 176 (263)
T PRK06581 153 YNELYSQFIQ----PIADNKTLDFINRF 176 (263)
T ss_pred HHHHHHHhcc----cccccHHHHHHHHH
Confidence 7777766653 33444445555554
No 493
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.98 E-value=0.0049 Score=60.89 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=17.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc
Q 006534 368 VLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAIA~el 389 (641)
.++.||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998776666554
No 494
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.98 E-value=0.055 Score=54.97 Aligned_cols=125 Identities=25% Similarity=0.298 Sum_probs=73.9
Q ss_pred ChhHHhhhCCCCCCe--eEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehh----hHHHH-------------------
Q 006534 353 SPDKYIRLGARPPRG--VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS----EFVEL------------------- 404 (641)
Q Consensus 353 ~p~~~~~lg~~~pkg--VLL~GPPGTGKT~LAkAIA~el---g~pfi~vs~s----e~v~~------------------- 404 (641)
+.+.-.++|.-.|.| +|+.|+.|||||.|.+.++-=+ +....+++.. +|+..
T Consensus 14 ndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~ 93 (235)
T COG2874 14 NDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLF 93 (235)
T ss_pred cHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEE
Confidence 334445667666655 7788999999999999987522 3333333221 11110
Q ss_pred ----------HhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEE
Q 006534 405 ----------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (641)
Q Consensus 405 ----------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emdg~~~~~~ViV 474 (641)
-.......+..+.+..+.....||+||-+..+.... .++.+.+++..+..+....++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-----------~~~~vl~fm~~~r~l~d~gKvIi 162 (235)
T COG2874 94 FPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-----------SEDAVLNFMTFLRKLSDLGKVII 162 (235)
T ss_pred EEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-----------cHHHHHHHHHHHHHHHhCCCEEE
Confidence 011122334455555555566799999998886332 13344556666666665666666
Q ss_pred EEecCCCCCCChhhhC
Q 006534 475 LGATNRSDVLDPALRR 490 (641)
Q Consensus 475 IaATN~pd~LDpALlR 490 (641)
+ |-+|+.++++++-
T Consensus 163 l--Tvhp~~l~e~~~~ 176 (235)
T COG2874 163 L--TVHPSALDEDVLT 176 (235)
T ss_pred E--EeChhhcCHHHHH
Confidence 4 4456788888865
No 495
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.93 E-value=0.021 Score=62.57 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.9
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhc
Q 006534 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAIA~el 389 (641)
-+||+||||||||+|++.+|+..
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 37999999999999999998865
No 496
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.91 E-value=0.037 Score=57.63 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=20.9
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHh
Q 006534 365 PRGVLLVGLPGTGKTLLAKAVAGE 388 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAIA~e 388 (641)
+.-+-|.||.|+|||||.|++.+-
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 345789999999999999999983
No 497
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.88 E-value=0.018 Score=66.56 Aligned_cols=95 Identities=19% Similarity=0.215 Sum_probs=59.0
Q ss_pred ccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC---CCeEEeehh-hHHH
Q 006534 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSAS-EFVE 403 (641)
Q Consensus 328 ~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAIA~elg---~pfi~vs~s-e~v~ 403 (641)
..+++++.-.++..+.+++++.. +...||++||+|+|||++..++..+.+ ..++.+.-. ++.-
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~-------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~ 358 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHK-------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINL 358 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHh-------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecC
Confidence 35677777666666666655531 112478999999999999998888764 334433211 1110
Q ss_pred -----HHhh-cchHHHHHHHHHHHhcCCceEEEcchhh
Q 006534 404 -----LYVG-MGASRVRDLFARAKKEAPSIIFIDEIDA 435 (641)
Q Consensus 404 -----~~vG-~~~~~vr~lF~~A~~~aP~ILfIDEIDa 435 (641)
..+. .......+.+..+....|+||++.||-.
T Consensus 359 ~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd 396 (564)
T TIGR02538 359 PGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRD 396 (564)
T ss_pred CCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCCC
Confidence 0011 1112356667777888999999999943
No 498
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=95.88 E-value=0.011 Score=58.13 Aligned_cols=40 Identities=25% Similarity=0.493 Sum_probs=34.5
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHH
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs~se~v~~~ 405 (641)
+-|+|.|+|-+|||++|++|...+..||+.+..+.|.+++
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~ 41 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMM 41 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhc
Confidence 3589999999999999999999999999999999998853
No 499
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.88 E-value=0.017 Score=64.93 Aligned_cols=96 Identities=20% Similarity=0.283 Sum_probs=60.1
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCe-eEEEcCCCCcHHHHHHHHHHhcCCCeE-EeehhhHHHH
Q 006534 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRG-VLLVGLPGTGKTLLAKAVAGEAEVPFI-SCSASEFVEL 404 (641)
Q Consensus 327 ~~vtf~DV~G~~e~K~~L~eiv~~L~~p~~~~~lg~~~pkg-VLL~GPPGTGKT~LAkAIA~elg~pfi-~vs~se~v~~ 404 (641)
...+|+++.......+.+.+++. .|.| +|+.||.|+|||+...++.++++-+.. .++..|-++.
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~--------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLN--------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHh--------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 35677888777777776666653 3444 667799999999999999998865443 2222222221
Q ss_pred H-hhc--------chHHHHHHHHHHHhcCCceEEEcchhhh
Q 006534 405 Y-VGM--------GASRVRDLFARAKKEAPSIIFIDEIDAV 436 (641)
Q Consensus 405 ~-vG~--------~~~~vr~lF~~A~~~aP~ILfIDEIDaL 436 (641)
. .|. .--.....++....+-|+||.+.||-..
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD~ 339 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRDL 339 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCCH
Confidence 0 010 0011223444555688999999999543
No 500
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=95.87 E-value=0.019 Score=65.99 Aligned_cols=32 Identities=31% Similarity=0.577 Sum_probs=29.6
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEee
Q 006534 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAIA~elg~pfi~vs 397 (641)
..|+|.|.||+|||++++.+|..++.+|+..+
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D 38 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADAD 38 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 35999999999999999999999999999775
Done!