Query 006534
Match_columns 641
No_of_seqs 462 out of 3748
Neff 5.9
Searched_HMMs 29240
Date Tue Mar 26 18:08:12 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006534.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2163-2167//hhsearch_pdb/006534hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 1.0 1 1 436.1 28.9 257 321-580 137-394 (405)
2 4b4t_H 26S protease regulatory 1.0 1 1 429.7 27.0 258 323-583 200-458 (467)
3 4b4t_I 26S protease regulatory 1.0 1 1 428.0 25.5 257 322-581 172-429 (437)
4 3cf2_A TER ATPase, transitiona 1.0 1 1 423.4 12.2 336 242-580 342-748 (806)
5 4b4t_M 26S protease regulatory 1.0 1 1 423.0 26.3 255 322-579 171-426 (434)
6 4b4t_L 26S protease subunit RP 1.0 1 1 419.9 27.2 254 322-578 171-425 (437)
7 4b4t_K 26S protease regulatory 1.0 1 1 414.2 27.7 252 323-577 163-416 (428)
8 2ce7_A Cell division protein F 1.0 1 1 414.1 31.0 295 326-627 10-304 (476)
9 2dhr_A FTSH; AAA+ protein, hex 1.0 1 1 404.1 26.7 308 314-629 14-321 (499)
10 3cf2_A TER ATPase, transitiona 1.0 1 1 379.8 21.1 248 324-577 196-461 (806)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=436.10 Aligned_cols=257 Identities=38% Similarity=0.639 Sum_probs=240.8
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHH
Q ss_conf 434578863213455773779999999998-1592688661899998049974899808999999997439986995212
Q 006534 321 KVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (641)
Q Consensus 321 ~~~~~~~~vtf~DV~G~~e~K~~L~eiv~~-Lk~p~~~~~lg~~~p~gVLL~GPPGTGKTlLAkAIA~e~gvpfi~is~s 399 (641)
...++.|+++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++.+|+.++++
T Consensus 137 ~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s 216 (405)
T 4b4t_J 137 MMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGA 216 (405)
T ss_dssp CEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHH
T ss_conf 35557999988882888999999999999987499999867999888258858999987899999998518885288868
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf 57888730114789999999985199639984121564203876422450689999999974213889999689999649
Q 006534 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 400 el~~~~vG~~a~~ir~lF~~A~~~aP~IIfIDEIDaL~~~r~~~~~~~~~de~~~~LnqLL~eldg~~~~~~VIVIaATN 479 (641)
++.++|+|++++.++.+|..|+..+||||||||||+++++|..+. .+++.+..+++++||++||++....+|+||+|||
T Consensus 217 ~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATN 295 (405)
T 4b4t_J 217 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGS-GGGDSEVQRTMLELLNQLDGFETSKNIKIIMATN 295 (405)
T ss_dssp GGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSS-SGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEES
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 951133546899999999999870994676533411115778889-9976899999999999604338888757881269
Q ss_pred CCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999944318887663999328999999999999883279998777878889984899999999999999999987409
Q 006534 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (641)
Q Consensus 480 rpd~LD~ALlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~i~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~ 559 (641)
+|+.||||++||||||+.|+|++||.++|.+||+.|+++ +++.++++++.+|..|+||||+||.++|++|++.|.+++
T Consensus 296 rpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~--~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~ 373 (405)
T 4b4t_J 296 RLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK--MNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRER 373 (405)
T ss_dssp CSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT--SBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 814489967287767669976996999999999998559--999965799999987799999999999999999999869
Q ss_pred CCCCCHHHHHHHHHHHHCCHH
Q ss_conf 962269889999999841222
Q 006534 560 KVVVEKIDFIHAVERSIAGIE 580 (641)
Q Consensus 560 ~~~It~~di~~Al~rv~~g~~ 580 (641)
+..|+++||+.|+++++....
T Consensus 374 ~~~vt~~Df~~Al~~v~~~~~ 394 (405)
T 4b4t_J 374 RIHVTQEDFELAVGKVMNKNQ 394 (405)
T ss_dssp CSBCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHCCCC
T ss_conf 987599999999999857265
No 2
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=429.72 Aligned_cols=258 Identities=41% Similarity=0.670 Sum_probs=242.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHH
Q ss_conf 4578863213455773779999999998-159268866189999804997489980899999999743998699521257
Q 006534 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~~e~K~~L~eiv~~-Lk~p~~~~~lg~~~p~gVLL~GPPGTGKTlLAkAIA~e~gvpfi~is~sel 401 (641)
.++.|+++|+||+|++++|++|++.+.+ +++|+.|.++|.++|+|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ECCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEHHHH
T ss_conf 15799998788545999999999999988429999987799999814764899980999999998446898699886995
Q ss_pred HHHHHHCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 88873011478999999998519963998412156420387642245068999999997421388999968999964999
Q 006534 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (641)
Q Consensus 402 ~~~~vG~~a~~ir~lF~~A~~~aP~IIfIDEIDaL~~~r~~~~~~~~~de~~~~LnqLL~eldg~~~~~~VIVIaATNrp 481 (641)
.++|+|++++.++.+|..|+..+||||||||+|+++.+|.... .+......++++++|.+||++....+|+||+|||+|
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrp 358 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDG-AGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRP 358 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSS-CGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCT
T ss_pred HCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf 0266778999999999998761784675223211013556767-786278999999999986555788837988287893
Q ss_pred CCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99994431888766399932899999999999988327999877787888998489999999999999999998740996
Q 006534 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (641)
Q Consensus 482 d~LD~ALlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~i~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~ 561 (641)
+.||+|++||||||+.|+|++||.++|.+||+.|+++ +++..+++++.+|..|.||||+||.++|++|++.|+++++.
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~--~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~ 436 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS--MSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK 436 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT--SCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 1179546366655079983896999999999998548--99987779999997779999999999999999999983887
Q ss_pred CCCHHHHHHHHHHHHCCHHHHH
Q ss_conf 2269889999999841222220
Q 006534 562 VVEKIDFIHAVERSIAGIEKKT 583 (641)
Q Consensus 562 ~It~~di~~Al~rv~~g~~~~~ 583 (641)
.|+++||..|+++++.+.++.+
T Consensus 437 ~it~~Df~~Al~kV~~g~~k~s 458 (467)
T 4b4t_H 437 VATEKDFLKAVDKVISGYKKFS 458 (467)
T ss_dssp SBCHHHHHHHHHHHHHHHCC--
T ss_pred CCCHHHHHHHHHHHHCCCCCCH
T ss_conf 6699999999999964745612
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=428.03 Aligned_cols=257 Identities=39% Similarity=0.660 Sum_probs=241.0
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHH
Q ss_conf 34578863213455773779999999998-15926886618999980499748998089999999974399869952125
Q 006534 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (641)
Q Consensus 322 ~~~~~~~vtf~DV~G~~e~K~~L~eiv~~-Lk~p~~~~~lg~~~p~gVLL~GPPGTGKTlLAkAIA~e~gvpfi~is~se 400 (641)
..++.|+++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++.+|+.+++++
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~ 251 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG
T ss_pred EECCCCCCCCEECCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEHHH
T ss_conf 43368998600557699999999999999876999998679997778844889996399999999998599879988799
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 78887301147899999999851996399841215642038764224506899999999742138899996899996499
Q 006534 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (641)
Q Consensus 401 l~~~~vG~~a~~ir~lF~~A~~~aP~IIfIDEIDaL~~~r~~~~~~~~~de~~~~LnqLL~eldg~~~~~~VIVIaATNr 480 (641)
+.++|+|++++.++.+|..|+..+||||||||||+++.+|.... ..++.+..+++++||.+||++....+|+||+|||+
T Consensus 252 l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~-~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNr 330 (437)
T 4b4t_I 252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSN-SGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNK 330 (437)
T ss_dssp GCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSS-CSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESC
T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 53144766999999999999865991898761222036677888-77658999999999997247678899799995798
Q ss_pred CCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999443188876639993289999999999998832799987778788899848999999999999999999874099
Q 006534 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (641)
Q Consensus 481 pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~i~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~ 560 (641)
|+.||+||+||||||+.|+|++||.++|.+||+.|+++ +++.++++++.+|..|.||||+||.++|++|++.|+++++
T Consensus 331 pd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~--~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~ 408 (437)
T 4b4t_I 331 IETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK--MNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERR 408 (437)
T ss_dssp STTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT--SCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 05559988648860279980896999999999999648--9999767999999767999899999999999999998489
Q ss_pred CCCCHHHHHHHHHHHHCCHHH
Q ss_conf 622698899999998412222
Q 006534 561 VVVEKIDFIHAVERSIAGIEK 581 (641)
Q Consensus 561 ~~It~~di~~Al~rv~~g~~~ 581 (641)
..|+++||..|++++..+...
T Consensus 409 ~~It~eDf~~Al~rv~~~~~~ 429 (437)
T 4b4t_I 409 MQVTAEDFKQAKERVMKNKVE 429 (437)
T ss_dssp SCBCHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHCCCCH
T ss_conf 966999999999987079873
No 4
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=423.44 Aligned_cols=336 Identities=34% Similarity=0.635 Sum_probs=273.2
Q ss_pred EEEEEECCCCCCCCHHHH--HHHCCCEECCCCC---------------------------CCCCHHHHHHHHHHHHHHHH
Q ss_conf 059995599997506899--8848916426888---------------------------88661899999999999999
Q 006534 242 RIVYTTTRPSDIKTPYEK--MLENQVEFGSPDK---------------------------RSGGFLNSALIALFYVAVLA 292 (641)
Q Consensus 242 ~~~~~t~~~~~~~~~~~~--~~~~~v~~~~~~~---------------------------~~~~~~~~~l~~~~~~~~~~ 292 (641)
.++.+|++|.+++..+.+ +++..+++..|+. .+.+|.+++|..++-.+.+.
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~ 421 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQ 421 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCHHHCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99996698032698885786361688668979899999999985689988643899999756899899999999999999
Q ss_pred HHHHHCCC-CCCC-------------CCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHH
Q ss_conf 99841243-3223-------------347545--5567899997434578863213455773779999999998-15926
Q 006534 293 GLLHRFPV-SFSQ-------------TAGQVG--HRKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPD 355 (641)
Q Consensus 293 ~~~~~~~~-~~~~-------------~~~~~~--~~~~~~~~~~~~~~~~~~vtf~DV~G~~e~K~~L~eiv~~-Lk~p~ 355 (641)
++.+.... .... ...... ......+.......+.|.++|+|++|++++|++|++.+.+ +++|+
T Consensus 422 A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~ 501 (806)
T 3cf2_A 422 AIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPD 501 (806)
T ss_dssp HHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSG
T ss_pred HHHHCCCCCCCCCCCCCHHHHCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHH
T ss_conf 99841451200013320455225565199999999728783112344457887888817889999999999975666899
Q ss_pred HHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCHHH
Q ss_conf 88661899998049974899808999999997439986995212578887301147899999999851996399841215
Q 006534 356 KYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDA 435 (641)
Q Consensus 356 ~~~~lg~~~p~gVLL~GPPGTGKTlLAkAIA~e~gvpfi~is~sel~~~~vG~~a~~ir~lF~~A~~~aP~IIfIDEIDa 435 (641)
.|.+.|..+|+|+|||||||||||++|+|+|++++.+|+.+++++++++|+|++++.++.+|+.|+..+||||||||||+
T Consensus 502 ~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 502 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp GGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred HHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCHHHCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHH
T ss_conf 99714888886079866877896399999999838966874241121033436899999999999972996352042567
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 64203876422450689999999974213889999689999649999999443188876639993289999999999998
Q 006534 436 VAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVH 515 (641)
Q Consensus 436 L~~~r~~~~~~~~~de~~~~LnqLL~eldg~~~~~~VIVIaATNrpd~LD~ALlRpgRFd~~I~v~~Pd~~eR~~ILk~~ 515 (641)
++++|+... ..++....+++++||++||++....+|+||+|||+|+.||+|++||||||+.|+|++||.++|.+||+.+
T Consensus 582 l~~~R~~~~-~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~ 660 (806)
T 3cf2_A 582 IAKARGGNI-GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 660 (806)
T ss_dssp CC---------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTT
T ss_pred HHHCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 763158888-8986699999999999974878779989999379804389847177855079997996999999999998
Q ss_pred HHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-------------------------CCCCCHHHHHH
Q ss_conf 83279998777878889984899999999999999999987409-------------------------96226988999
Q 006534 516 VSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN-------------------------KVVVEKIDFIH 570 (641)
Q Consensus 516 l~~~~i~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~-------------------------~~~It~~di~~ 570 (641)
+++ .++..+++++.||+.|+||||+||.++|++|++.|.++. ...|+++||++
T Consensus 661 l~~--~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~ 738 (806)
T 3cf2_A 661 LRK--SPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEE 738 (806)
T ss_dssp SSC--C--CCC----------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTT
T ss_pred HCC--CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 567--999877899999976899999999999999999999999985644433301574100123345668647999999
Q ss_pred HHHHHHCCHH
Q ss_conf 9999841222
Q 006534 571 AVERSIAGIE 580 (641)
Q Consensus 571 Al~rv~~g~~ 580 (641)
|+.++...+.
T Consensus 739 al~~~~pSvs 748 (806)
T 3cf2_A 739 AMRFARRSVS 748 (806)
T ss_dssp TC--------
T ss_pred HHHHCCCCCC
T ss_conf 9986799999
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=422.96 Aligned_cols=255 Identities=40% Similarity=0.646 Sum_probs=238.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHH
Q ss_conf 34578863213455773779999999998-15926886618999980499748998089999999974399869952125
Q 006534 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (641)
Q Consensus 322 ~~~~~~~vtf~DV~G~~e~K~~L~eiv~~-Lk~p~~~~~lg~~~p~gVLL~GPPGTGKTlLAkAIA~e~gvpfi~is~se 400 (641)
..++.|+++|+||+|++++|++|.+.+.+ +++|+.|.++|.++|+|+|||||||||||++|+|+|++++.+|+.+++++
T Consensus 171 ~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~ 250 (434)
T 4b4t_M 171 EVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ 250 (434)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHH
T ss_conf 66889799867609579999999999999974999998679998872687794999889999999999599889986446
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 78887301147899999999851996399841215642038764224506899999999742138899996899996499
Q 006534 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (641)
Q Consensus 401 l~~~~vG~~a~~ir~lF~~A~~~aP~IIfIDEIDaL~~~r~~~~~~~~~de~~~~LnqLL~eldg~~~~~~VIVIaATNr 480 (641)
+.++|+|++++.++.+|..|+..+||||||||+|+++.+|.... ..+..+..+++++||.+||++....+|+||||||+
T Consensus 251 l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~-~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNr 329 (434)
T 4b4t_M 251 LVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE-KSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNR 329 (434)
T ss_dssp GCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGG-GGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSS
T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 43134563899999999999861990896033256652257788-88746999999999997136688899899994899
Q ss_pred CCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999443188876639993289999999999998832799987778788899848999999999999999999874099
Q 006534 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (641)
Q Consensus 481 pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~i~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~ 560 (641)
|+.||||++||||||+.|+|++||.++|.+||+.|+++ +++.++++++.+|..|.||||+||.++|++|++.|.++++
T Consensus 330 p~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~--~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~ 407 (434)
T 4b4t_M 330 VDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRK--MTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQ 407 (434)
T ss_dssp CCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHH--SCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 22339967157740389980895999999999998568--9998767999999868998999999999999999998699
Q ss_pred CCCCHHHHHHHHHHHHCCH
Q ss_conf 6226988999999984122
Q 006534 561 VVVEKIDFIHAVERSIAGI 579 (641)
Q Consensus 561 ~~It~~di~~Al~rv~~g~ 579 (641)
..|+++||.+|++++....
T Consensus 408 ~~i~~~Df~~Al~~v~~~~ 426 (434)
T 4b4t_M 408 SSVKHEDFVEGISEVQARK 426 (434)
T ss_dssp SSBCHHHHHHHHHSCSSSC
T ss_pred CCCCHHHHHHHHHHHHCCC
T ss_conf 8769999999999973777
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=419.91 Aligned_cols=254 Identities=42% Similarity=0.668 Sum_probs=238.6
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHH
Q ss_conf 34578863213455773779999999998-15926886618999980499748998089999999974399869952125
Q 006534 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (641)
Q Consensus 322 ~~~~~~~vtf~DV~G~~e~K~~L~eiv~~-Lk~p~~~~~lg~~~p~gVLL~GPPGTGKTlLAkAIA~e~gvpfi~is~se 400 (641)
..++.|+++|+||+|++++|++|.+.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++.+|+.+++++
T Consensus 171 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~ 250 (437)
T 4b4t_L 171 TSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASG 250 (437)
T ss_dssp EEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred EECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHH
T ss_conf 33159998966717859999999999999874999998679897876999899998499999999998599989984146
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 78887301147899999999851996399841215642038764224506899999999742138899996899996499
Q 006534 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (641)
Q Consensus 401 l~~~~vG~~a~~ir~lF~~A~~~aP~IIfIDEIDaL~~~r~~~~~~~~~de~~~~LnqLL~eldg~~~~~~VIVIaATNr 480 (641)
+.++|+|++++.++.+|..|+..+||||||||+|+++.+|.... ...+.+..+++++||.+||++....+++||+|||+
T Consensus 251 l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~-~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNr 329 (437)
T 4b4t_L 251 IVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEG-TSADREIQRTLMELLTQMDGFDNLGQTKIIMATNR 329 (437)
T ss_dssp TCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSC-CSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESS
T ss_pred HCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 20552017899999999999863896464204433333334478-87536899999999998346667798699993399
Q ss_pred CCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999443188876639993289999999999998832799987778788899848999999999999999999874099
Q 006534 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (641)
Q Consensus 481 pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~i~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~ 560 (641)
|+.|||||+||||||+.|+|++||.++|.+||+.|+++ +++..+++++.+|..|.||||+||.++|++|++.|.++++
T Consensus 330 p~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~--~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~ 407 (437)
T 4b4t_L 330 PDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK--VKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDR 407 (437)
T ss_dssp TTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHT--SCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 03318978277710200135996999999999998658--9998645899999768999999999999999999998699
Q ss_pred CCCCHHHHHHHHHHHHCC
Q ss_conf 622698899999998412
Q 006534 561 VVVEKIDFIHAVERSIAG 578 (641)
Q Consensus 561 ~~It~~di~~Al~rv~~g 578 (641)
..|+++||..|++++...
T Consensus 408 ~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 408 DHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp SSBCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHC
T ss_conf 877999999999998750
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=414.18 Aligned_cols=252 Identities=44% Similarity=0.660 Sum_probs=236.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHH
Q ss_conf 4578863213455773779999999998-159268866189999804997489980899999999743998699521257
Q 006534 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~~e~K~~L~eiv~~-Lk~p~~~~~lg~~~p~gVLL~GPPGTGKTlLAkAIA~e~gvpfi~is~sel 401 (641)
.++.|+++|+||+|++++|++|.+.+.+ +++|+.|..+|..+|+|+|||||||||||++|+|+|++++++|+.++++++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCHH
T ss_conf 77899998888516999999999999998739999986799988658888989988899999999986799699933044
Q ss_pred HHHHHHCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 88873011478999999998519963998412156420387642245068999999997421388999968999964999
Q 006534 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (641)
Q Consensus 402 ~~~~vG~~a~~ir~lF~~A~~~aP~IIfIDEIDaL~~~r~~~~~~~~~de~~~~LnqLL~eldg~~~~~~VIVIaATNrp 481 (641)
.++|+|.++..++++|..|+..+||||||||+|+++..|.... ..++.+..+++++||++||++....+|+||+|||+|
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~-~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~ 321 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ-TGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRA 321 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSC-SCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCS
T ss_pred HCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCH
T ss_conf 3145460599999999999973997463002243303556787-888718999999999984387877997999961981
Q ss_pred CCCCHHHHCCCCCCEEEEEC-CCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99994431888766399932-89999999999998832799987778788899848999999999999999999874099
Q 006534 482 DVLDPALRRPGRFDRVVMVE-TPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (641)
Q Consensus 482 d~LD~ALlRpgRFd~~I~v~-~Pd~~eR~~ILk~~l~~~~i~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~ 560 (641)
+.||||++||||||+.|+++ +||.++|..||+.|+++ +++.++++++.+|..|.||||+||.++|++|++.|.++++
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~--~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~ 399 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASK--MSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR 399 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHS--SCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 55696663687515999819999999999999998557--9999635899999777998899999999999999998799
Q ss_pred CCCCHHHHHHHHHHHHC
Q ss_conf 62269889999999841
Q 006534 561 VVVEKIDFIHAVERSIA 577 (641)
Q Consensus 561 ~~It~~di~~Al~rv~~ 577 (641)
..|+++||++|+.+++.
T Consensus 400 ~~i~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 400 YVILQSDLEEAYATQVK 416 (428)
T ss_dssp SSBCHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHC
T ss_conf 87799999999997617
No 8
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=1.00 E-value=1 Score=414.14 Aligned_cols=295 Identities=57% Similarity=0.880 Sum_probs=277.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHH
Q ss_conf 88632134557737799999999981592688661899998049974899808999999997439986995212578887
Q 006534 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (641)
Q Consensus 326 ~~~vtf~DV~G~~e~K~~L~eiv~~Lk~p~~~~~lg~~~p~gVLL~GPPGTGKTlLAkAIA~e~gvpfi~is~sel~~~~ 405 (641)
.+.++|+||+|++++|+++++++.++++|..|..+|.++|+|+||+||||||||++|+++|++++.||+.++++++.+.|
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHHCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHH
T ss_conf 89999888188499999999999984072877643788897389988999888999999999819986607899999997
Q ss_pred HHCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 30114789999999985199639984121564203876422450689999999974213889999689999649999999
Q 006534 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (641)
Q Consensus 406 vG~~a~~ir~lF~~A~~~aP~IIfIDEIDaL~~~r~~~~~~~~~de~~~~LnqLL~eldg~~~~~~VIVIaATNrpd~LD 485 (641)
+|.++.+++.+|..|+...||||||||+|.++.+++.. ..+.+++..+++++|+.+|+++....+++||++||+++.+|
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~-~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG-LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHCCCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHC
T ss_conf 34108899999999984599789985666542100466-67676889999999999975337888889999568756636
Q ss_pred HHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 44318887663999328999999999999883279998777878889984899999999999999999987409962269
Q 006534 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEK 565 (641)
Q Consensus 486 ~ALlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~i~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~~~~It~ 565 (641)
++++|||||++.+.+++||.++|.+|++.++++. ++.+++++..++..++||+|+||.++|++|++.|.+++...|+.
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~--~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~ 246 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK--PLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITM 246 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS--CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred HHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEECH
T ss_conf 3312267530686158999899999999999727--88605549999875579839999999999999999748982339
Q ss_pred HHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
Q ss_conf 88999999984122222004874477999988777899986775209999950267652054
Q 006534 566 IDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRDSK 627 (641)
Q Consensus 566 ~di~~Al~rv~~g~~~~~~~ls~~ek~~~a~hEaghAlv~~~~~~~~p~~~~v~kvti~~~~ 627 (641)
+||.+|+++++.+.+++...+++.++..++|||+|||++++ ++|+.+|++||||.+..
T Consensus 247 ~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~----~l~~~~~~~~~~i~prg 304 (476)
T 2ce7_A 247 KDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVST----VVPNGEPVHRISIIPRG 304 (476)
T ss_dssp HHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHH----HSTTCCCCCEEECC---
T ss_pred HHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHH----CCCCCCCCCEEEEECCC
T ss_conf 99999999985574434303210010463799862478763----14776543504660574
No 9
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=404.14 Aligned_cols=308 Identities=52% Similarity=0.793 Sum_probs=280.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 78999974345788632134557737799999999981592688661899998049974899808999999997439986
Q 006534 314 TRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF 393 (641)
Q Consensus 314 ~~~~~~~~~~~~~~~vtf~DV~G~~e~K~~L~eiv~~Lk~p~~~~~lg~~~p~gVLL~GPPGTGKTlLAkAIA~e~gvpf 393 (641)
++++......+. +.++|+||+|++++|.++++++.++.++..|..++...|+|+||+||||||||+||+++|++++.+|
T Consensus 14 ~~~~~~~~~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~ 92 (499)
T 2dhr_A 14 FTKSRARVLTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPF 92 (499)
T ss_dssp ----CCEEECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCE
T ss_pred CCCCCCEEECCC-CCCCHHHCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 566764363269-9999998188399999999999983060655414687886389989999889999999988748987
Q ss_pred EEEEHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 99521257888730114789999999985199639984121564203876422450689999999974213889999689
Q 006534 394 ISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (641)
Q Consensus 394 i~is~sel~~~~vG~~a~~ir~lF~~A~~~aP~IIfIDEIDaL~~~r~~~~~~~~~de~~~~LnqLL~eldg~~~~~~VI 473 (641)
+.++++++.+.++|.+..+++.+|+.++...|||+||||||.++..++.. ..+.+++..+++++++.+|+++.....++
T Consensus 93 i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~-~~~~~~e~~~~l~~LL~~Ldg~~~~~~vi 171 (499)
T 2dhr_A 93 ITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG-VGGGNDEREQTLNQLLVEMDGFEKDTAIV 171 (499)
T ss_dssp EEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSS-TTTSSHHHHHHHHHHHHHGGGCCSSCCCE
T ss_pred EEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 99833687776421589999999999871599889974298898742467-67874899999999998741466676189
Q ss_pred EEEECCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 99964999999944318887663999328999999999999883279998777878889984899999999999999999
Q 006534 474 VLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (641)
Q Consensus 474 VIaATNrpd~LD~ALlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~i~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eA~l 553 (641)
++++||+|+.||++++||+||++.|.+++||.++|.+||+.|++. .++.+++++..+|..++||+|+||+++|++|++
T Consensus 172 viAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~--~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~ 249 (499)
T 2dhr_A 172 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADLENLLNEAAL 249 (499)
T ss_dssp EEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSS--SCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHH
T ss_pred EEEECCCHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 999568845438312556614569852899999999999999826--999768889999986389979999999999999
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC
Q ss_conf 9874099622698899999998412222200487447799998877789998677520999995026765205432
Q 006534 554 LAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRDSKSQ 629 (641)
Q Consensus 554 ~A~r~~~~~It~~di~~Al~rv~~g~~~~~~~ls~~ek~~~a~hEaghAlv~~~~~~~~p~~~~v~kvti~~~~~~ 629 (641)
.|.+++...|+.+||.+|++++..+.+++...+++.+++.++|||+|||++++ ++|+.+||+|+||.++++-
T Consensus 250 ~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~----~l~~~~~v~~~~i~pr~~~ 321 (499)
T 2dhr_A 250 LAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAH----FLEHADGVHKVTIVPRGRA 321 (499)
T ss_dssp HHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHC----CSSSCCCCCCEESCCSSCT
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HCCCCCEEEEEEEECCCCC
T ss_conf 99982898657999999999872364433211247777621899998999986----6578870667874047776
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=379.83 Aligned_cols=248 Identities=43% Similarity=0.682 Sum_probs=228.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHH
Q ss_conf 578863213455773779999999998-1592688661899998049974899808999999997439986995212578
Q 006534 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 324 ~~~~~vtf~DV~G~~e~K~~L~eiv~~-Lk~p~~~~~lg~~~p~gVLL~GPPGTGKTlLAkAIA~e~gvpfi~is~sel~ 402 (641)
...+.++|+||+|++++|++|++++.+ +++|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEHHHHH
T ss_conf 45899990351499999999999999875198988635899997589779899988999999999719839999737954
Q ss_pred HHHHHCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf 88730114789999999985199639984121564203876422450689999999974213889999689999649999
Q 006534 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 403 ~~~vG~~a~~ir~lF~~A~~~aP~IIfIDEIDaL~~~r~~~~~~~~~de~~~~LnqLL~eldg~~~~~~VIVIaATNrpd 482 (641)
++|+|++++.++.+|+.|+.++||||||||||+++++++.. .++...+++++|+.+||++..+.+|+||++||+++
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~----~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d 351 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN 351 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC----CCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTT
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCC----CCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHH
T ss_conf 33316789999999999997299299985100233445778----87399999999999974666669879999669803
Q ss_pred CCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC---
Q ss_conf 99944318887663999328999999999999883279998777878889984899999999999999999987409---
Q 006534 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN--- 559 (641)
Q Consensus 483 ~LD~ALlRpgRFd~~I~v~~Pd~~eR~~ILk~~l~~~~i~l~~dvdl~~LA~~t~GfSgaDL~~Lv~eA~l~A~r~~--- 559 (641)
.||++++|||||++.|++++||.++|.+||+.|+++ .++..++++..+|..|.||+|+||.++|++|++.|.++.
T Consensus 352 ~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~--~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~ 429 (806)
T 3cf2_A 352 SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN--MKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDL 429 (806)
T ss_dssp TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSS--SEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 269888578636168866897989999999998568--998864389999975689989999999999999999841451
Q ss_pred --------------CCCCCHHHHHHHHHHHHC
Q ss_conf --------------962269889999999841
Q 006534 560 --------------KVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 560 --------------~~~It~~di~~Al~rv~~ 577 (641)
...|+.+||..|+..+..
T Consensus 430 i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~p 461 (806)
T 3cf2_A 430 IDLEDETIDAEVMNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp GGGTCCCCSHHHHHHCEECTTHHHHHHSSSSC
T ss_pred CCCCCCCCCHHHHCCCEEEHHHHHHHHHHCCC
T ss_conf 20001332045522556519999999972878
Done!