BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006535
(641 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 300 bits (767), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 157/288 (54%), Positives = 201/288 (69%), Gaps = 6/288 (2%)
Query: 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 388
+TF DV G +EA EEL+E+VEFL+ P K+ R+GAR P+G+LLVG PGTGKTLLA+AVAGE
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72
Query: 389 AEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVS 448
A VPF S S+FVEL+VG+GA+RVRDLFA+AK AP I+FIDEIDAV + R G
Sbjct: 73 ANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHR-GAGLGGG 131
Query: 449 NDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGR 508
+DEREQTLNQLL EMDGFDS +IV+ ATNR D+LDPAL RPGRFD+ ++V+ PD +GR
Sbjct: 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191
Query: 509 EAILKVHVSKKELPLAKDIDLGDIASMTTGFTGXXXXXXXXXXXXXXGRLNKVVVEKIDF 568
+ IL++H K PLA+D++L IA T GF G R + + DF
Sbjct: 192 KKILEIHTRNK--PLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDF 249
Query: 569 IHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQP 616
A++R IAG +K+ + +EK ++A HEAGHAVV T V + G+P
Sbjct: 250 EEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPN---GEP 294
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 298 bits (762), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 156/288 (54%), Positives = 200/288 (69%), Gaps = 6/288 (2%)
Query: 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 388
+TF DV G +EA EEL+E+VEFL+ P K+ R+GAR P+G+LLVG PGTG TLLA+AVAGE
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGE 72
Query: 389 AEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVS 448
A VPF S S+FVEL+VG+GA+RVRDLFA+AK AP I+FIDEIDAV + R G
Sbjct: 73 ANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHR-GAGLGGG 131
Query: 449 NDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGR 508
+DEREQTLNQLL EMDGFDS +IV+ ATNR D+LDPAL RPGRFD+ ++V+ PD +GR
Sbjct: 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191
Query: 509 EAILKVHVSKKELPLAKDIDLGDIASMTTGFTGXXXXXXXXXXXXXXGRLNKVVVEKIDF 568
+ IL++H K PLA+D++L IA T GF G R + + DF
Sbjct: 192 KKILEIHTRNK--PLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDF 249
Query: 569 IHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQP 616
A++R IAG +K+ + +EK ++A HEAGHAVV T V + G+P
Sbjct: 250 EEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPN---GEP 294
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 287 bits (735), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 151/256 (58%), Positives = 183/256 (71%), Gaps = 3/256 (1%)
Query: 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAG 387
+ F D+AG +EAKEE+ EIV+FL+ P++Y LGA+ P+GVLLVG PGTGKTLLAKAVAG
Sbjct: 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66
Query: 388 EAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIV 447
EA VPF S S F+E++VG+GASRVRDLF AKK+APSIIFIDEIDA+ KSR +
Sbjct: 67 EAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVS 126
Query: 448 SNDEREQTLNQLLTEMDGFDS-NSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKI 506
NDEREQTLNQLL EMDGF S N+ VIVL ATNR ++LDPAL RPGRFDR V+V+ PD
Sbjct: 127 GNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFN 186
Query: 507 GREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGXXXXXXXXXXXXXXGRLNKVVVEKI 566
GR ILKVH+ K + LA D++L ++A +T G G GR N+ V +
Sbjct: 187 GRVEILKVHI--KGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQ 244
Query: 567 DFIHAVERSIAGIEKK 582
AVER IAG+EKK
Sbjct: 245 HLKEAVERGIAGLEKK 260
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 279 bits (713), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 146/251 (58%), Positives = 181/251 (72%), Gaps = 3/251 (1%)
Query: 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA 389
TFADVAG DEAKEE+ E+VE+LR P ++ +LG + P+GVL+VG PGTGKTLLAKA+AGEA
Sbjct: 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69
Query: 390 EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSN 449
+VPF + S S+FVE++VG+GASRVRD+F +AKK AP IIFIDEIDAV + R G +
Sbjct: 70 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR-GAGLGGGH 128
Query: 450 DEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGRE 509
DEREQTLNQ+L EMDGF+ N +IV+ ATNR DVLDPAL RPGRFDR V+V PD GRE
Sbjct: 129 DEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGRE 188
Query: 510 AILKVHVSKKELPLAKDIDLGDIASMTTGFTGXXXXXXXXXXXXXXGRLNKVVVEKIDFI 569
ILKVH+ + +PLA DID IA T GF+G R NK VV ++F
Sbjct: 189 QILKVHM--RRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFE 246
Query: 570 HAVERSIAGIE 580
A ++ + G+E
Sbjct: 247 KAKDKIMMGLE 257
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 265 bits (678), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 148/284 (52%), Positives = 193/284 (67%), Gaps = 3/284 (1%)
Query: 320 AKVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKT 379
A+V + +TF DVAG +EAKEEL+EIVEFL++P ++ +GAR P+GVLLVG PG GKT
Sbjct: 19 ARVLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKT 78
Query: 380 LLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKS 439
LA+AVAGEA VPFI+ S S+FVE++VG+GA+RVRDLF AK+ AP I+FIDEIDAV +
Sbjct: 79 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRK 138
Query: 440 RDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVM 499
R G NDEREQTLNQLL EMDGF+ ++A++V+ ATNR D+LDPAL RPGRFDR +
Sbjct: 139 R-GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIA 197
Query: 500 VETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGXXXXXXXXXXXXXXGRLN 559
++ PD GRE IL++H K PLA+D+DL +A T GF G R
Sbjct: 198 IDAPDVKGREQILRIHARGK--PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG 255
Query: 560 KVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAV 603
+ + D A +R + KK+ L ++ + A HEAGHA+
Sbjct: 256 RRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHAL 299
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 265 bits (677), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 148/284 (52%), Positives = 193/284 (67%), Gaps = 3/284 (1%)
Query: 320 AKVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKT 379
A+V + +TF DVAG +EAKEEL+EIVEFL++P ++ +GAR P+GVLLVG PG GKT
Sbjct: 28 ARVLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKT 87
Query: 380 LLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKS 439
LA+AVAGEA VPFI+ S S+FVE++VG+GA+RVRDLF AK+ AP I+FIDEIDAV +
Sbjct: 88 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRK 147
Query: 440 RDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVM 499
R G NDEREQTLNQLL EMDGF+ ++A++V+ ATNR D+LDPAL RPGRFDR +
Sbjct: 148 R-GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIA 206
Query: 500 VETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGXXXXXXXXXXXXXXGRLN 559
++ PD GRE IL++H K PLA+D+DL +A T GF G R
Sbjct: 207 IDAPDVKGREQILRIHARGK--PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG 264
Query: 560 KVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAV 603
+ + D A +R + KK+ L ++ + A HEAGHA+
Sbjct: 265 RRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHAL 308
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 251 bits (641), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 134/222 (60%), Positives = 170/222 (76%), Gaps = 3/222 (1%)
Query: 320 AKVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKT 379
A+V + +TF DVAG +EAKEEL+EIVEFL++P ++ +GAR P+GVLLVG PG GKT
Sbjct: 28 ARVLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKT 87
Query: 380 LLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKS 439
LA+AVAGEA VPFI+ S S+FVE++VG+GA+RVRDLF AK+ AP I+FIDEIDAV +
Sbjct: 88 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRK 147
Query: 440 RDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVM 499
R G NDEREQTLNQLL EMDGF+ ++A++V+ ATNR D+LDPAL RPGRFDR +
Sbjct: 148 R-GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIA 206
Query: 500 VETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541
++ PD GRE IL++H K PLA+D+DL +A T GF G
Sbjct: 207 IDAPDVKGREQILRIHARGK--PLAEDVDLALLAKRTPGFVG 246
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 251 bits (640), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 136/226 (60%), Positives = 173/226 (76%), Gaps = 4/226 (1%)
Query: 316 GPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPG 375
GP G+ ++E +TF DVAG +EAKEEL+EIVEFL++P ++ +GAR P+GVLLVG PG
Sbjct: 1 GPLGSVLTE-APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPG 59
Query: 376 TGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDA 435
GKT LA+AVAGEA VPFI+ S S+FVE++VG+GA+RVRDLF AK+ AP I+FIDEIDA
Sbjct: 60 VGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA 119
Query: 436 VAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFD 495
V + R G NDEREQTLNQLL EMDGF+ ++A++V+ ATNR D+LDPAL RPGRFD
Sbjct: 120 VGRKR-GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFD 178
Query: 496 RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541
R + ++ PD GRE IL++H K PLA+D+DL +A T GF G
Sbjct: 179 RQIAIDAPDVKGREQILRIHARGK--PLAEDVDLALLAKRTPGFVG 222
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 232 bits (592), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 119/255 (46%), Positives = 163/255 (63%)
Query: 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 388
++F DVAG+ EAK E+ E V++L+SP+++++LGA+ P+G LL+G PG GKTLLAKAVA E
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62
Query: 389 AEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVS 448
A+VPF++ + +EFVE+ G+GA+RVR LF A+ AP I++IDEIDAV K R S
Sbjct: 63 AQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFS 122
Query: 449 NDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGR 508
N E EQTLNQLL EMDG + VIVL +TNR+D+LD AL RPGR DR V ++ P R
Sbjct: 123 NTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQER 182
Query: 509 EAILKVHVSKKELPLAKDIDLGDIASMTTGFTGXXXXXXXXXXXXXXGRLNKVVVEKIDF 568
I + H+ +L + +A +T GF+G R V ++F
Sbjct: 183 REIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNF 242
Query: 569 IHAVERSIAGIEKKT 583
+AVER +AG KK+
Sbjct: 243 EYAVERVLAGTAKKS 257
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 157/248 (63%), Gaps = 4/248 (1%)
Query: 328 TITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVA 386
+ + D+ G+++ +E+ E+VE L+ P+ + ++G PP+G+LL G PGTGKTLLAKAVA
Sbjct: 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVA 72
Query: 387 GEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI 446
E FI SE V+ ++G GAS V+D+F AK++APSIIFIDEIDA+A R
Sbjct: 73 TETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDAL-T 131
Query: 447 VSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKI 506
+ E ++TL QLL EMDGFD+ V ++GATNR D+LDPA+ RPGRFDR++ V PD+
Sbjct: 132 GGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEK 191
Query: 507 GREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGXXXXXXXXXXXXXXGRLNKVVVEKI 566
GR ILK+H K + LA+D++L +IA MT G G R + V
Sbjct: 192 GRLEILKIHTRK--MNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMD 249
Query: 567 DFIHAVER 574
DF AVE+
Sbjct: 250 DFRKAVEK 257
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 192 bits (488), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 144/214 (67%), Gaps = 4/214 (1%)
Query: 329 ITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAG 387
+T+ D+ G+++ K EL+E+V++ + PDK+++ G P +GVL G PG GKTLLAKA+A
Sbjct: 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71
Query: 388 EAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIV 447
E + FIS E + ++ G + VR++F +A++ AP ++F DE+D++AK+R G
Sbjct: 72 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR-GGNIGD 130
Query: 448 SNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIG 507
++ +NQ+LTEMDG + V ++GATNR D++DPA+ RPGR D+++ + PD+
Sbjct: 131 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 190
Query: 508 REAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541
R AILK ++ K P+AKD+DL +A MT GF+G
Sbjct: 191 RVAILKANLRKS--PVAKDVDLEFLAKMTNGFSG 222
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 191 bits (486), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 144/214 (67%), Gaps = 4/214 (1%)
Query: 329 ITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAG 387
+T+ D+ G+++ K EL+E+V++ + PDK+++ G P +GVL G PG GKTLLAKA+A
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 388 EAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIV 447
E + FIS E + ++ G + VR++F +A++ AP ++F DE+D++AK+R G
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR-GGNIGD 592
Query: 448 SNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIG 507
++ +NQ+LTEMDG + V ++GATNR D++DPA+ RPGR D+++ + PD+
Sbjct: 593 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652
Query: 508 REAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541
R AILK ++ K P+AKD+DL +A MT GF+G
Sbjct: 653 RVAILKANLRKS--PVAKDVDLEFLAKMTNGFSG 684
Score = 162 bits (410), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 130/219 (59%), Gaps = 7/219 (3%)
Query: 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLA 382
E + + + D+ G + +++E+VE LR P + +G +PPRG+LL G PGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 383 KAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDG 442
+AVA E F + E + G S +R F A+K AP+IIFIDE+DA+A R+
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315
Query: 443 RFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVET 502
+ + ++QLLT MDG + VIV+ ATNR + +DPALRR GRFDR V +
Sbjct: 316 ----THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI 371
Query: 503 PDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541
PD GR IL++H K + LA D+DL +A+ T G G
Sbjct: 372 PDATGRLEILQIHT--KNMKLADDVDLEQVANETHGHVG 408
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 191 bits (485), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 144/214 (67%), Gaps = 4/214 (1%)
Query: 329 ITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAG 387
+T+ D+ G+++ K EL+E+V++ + PDK+++ G P +GVL G PG GKTLLAKA+A
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 388 EAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIV 447
E + FIS E + ++ G + VR++F +A++ AP ++F DE+D++AK+R G
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR-GGNIGD 592
Query: 448 SNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIG 507
++ +NQ+LTEMDG + V ++GATNR D++DPA+ RPGR D+++ + PD+
Sbjct: 593 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652
Query: 508 REAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541
R AILK ++ K P+AKD+DL +A MT GF+G
Sbjct: 653 RVAILKANLRKS--PVAKDVDLEFLAKMTNGFSG 684
Score = 162 bits (411), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 130/219 (59%), Gaps = 7/219 (3%)
Query: 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLA 382
E + + + DV G + +++E+VE LR P + +G +PPRG+LL G PGTGKTL+A
Sbjct: 196 ESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 383 KAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDG 442
+AVA E F + E + G S +R F A+K AP+IIFIDE+DA+A R+
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315
Query: 443 RFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVET 502
+ + ++QLLT MDG + VIV+ ATNR + +DPALRR GRFDR V +
Sbjct: 316 ----THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI 371
Query: 503 PDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541
PD GR IL++H K + LA D+DL +A+ T G G
Sbjct: 372 PDATGRLEILQIHT--KNMKLADDVDLEQVANETHGHVG 408
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 175 bits (444), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 107/261 (40%), Positives = 152/261 (58%), Gaps = 10/261 (3%)
Query: 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLA 382
EQG+ ITF + G+ E EL E++E L++P+ + R+G +PP+GVLL G PGTGKTLLA
Sbjct: 174 EQGE-ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232
Query: 383 KAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDG 442
KAVA FI AS V+ Y+G A +R++FA AK+ P IIF+DE+DA+
Sbjct: 233 KAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGR--- 289
Query: 443 RFRIVSNDERE--QTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMV 500
RF ++ +RE +TL +LLT+MDGFD+ ++ ATNR D LDPAL RPGR DR V +
Sbjct: 290 RFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEI 349
Query: 501 ETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGXXXXXXXXXXXXXXGRLNK 560
P++ GR I K+H +K + + D M+ GF G R ++
Sbjct: 350 PLPNEAGRLEIFKIHTAK--VKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDR 407
Query: 561 VVVEKIDFIHAVERSIAGIEK 581
+ D + AV R +A ++K
Sbjct: 408 DHINPDDLMKAV-RKVAEVKK 427
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/261 (39%), Positives = 149/261 (57%), Gaps = 8/261 (3%)
Query: 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLA 382
E+ +T++DV G + E+L E+VE L SP+++ LG PP+G+LL G PGTGKTL A
Sbjct: 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260
Query: 383 KAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSR-- 440
+AVA + FI SE V+ YVG GA VR+LF A+ + IIF DEIDAV +R
Sbjct: 261 RAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFD 320
Query: 441 DGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMV 500
DG ++E ++T+ +L+T++DGFD + V+ ATNR + LDPAL RPGR DR V
Sbjct: 321 DG---AGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEF 377
Query: 501 ETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGXXXXXXXXXXXXXXGRLNK 560
PD GR I ++H K + + + I I+ + TG R +
Sbjct: 378 SLPDLEGRANIFRIH--SKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR 435
Query: 561 VVVEKIDFIHAVERSIAGIEK 581
V + DF+ AV++ I+G +K
Sbjct: 436 KVATEKDFLKAVDKVISGYKK 456
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/248 (40%), Positives = 144/248 (58%), Gaps = 8/248 (3%)
Query: 328 TITFADVAGVDEAKEEL-EEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVA 386
T T++DV G+D+ EEL E IV ++ DK+ +G R P+G L+ G PGTGKTLLA+A A
Sbjct: 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACA 236
Query: 387 GEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI 446
+ F+ +A + V++Y+G GA VRD FA AK++AP+IIFIDE+DA+ RF
Sbjct: 237 AQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTK---RFDS 293
Query: 447 VSNDERE--QTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPD 504
+ +RE +T+ +LL ++DGF S+ V VL ATNR DVLDPAL R GR DR + P
Sbjct: 294 EKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPS 353
Query: 505 KIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGXXXXXXXXXXXXXXGRLNKVVVE 564
+ R IL++H K + DI+ ++A T F G R + V+
Sbjct: 354 EDSRAQILQIHSRK--MTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVK 411
Query: 565 KIDFIHAV 572
DF+ +
Sbjct: 412 HEDFVEGI 419
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 107/249 (42%), Positives = 142/249 (57%), Gaps = 13/249 (5%)
Query: 329 ITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAG 387
+T+ADV G+D K+E+ E VE L D Y ++G PPRGVLL G PGTGKT+L KAVA
Sbjct: 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228
Query: 388 EAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIV 447
+ FI + SEFV Y+G G VRD+F A++ APSIIFIDE+D++A RF
Sbjct: 229 STKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATK---RFDAQ 285
Query: 448 SNDERE--QTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETP-- 503
+ +RE + L +LLT+MDGFD ++ V V+ ATNR+D LDPAL RPGR DR +E P
Sbjct: 286 TGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDR--KIEFPSL 343
Query: 504 -DKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGXXXXXXXXXXXXXXGRLNKVV 562
D+ R I SK + LA + DL + +G R N+ V
Sbjct: 344 RDRRERRLIFGTIASK--MSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYV 401
Query: 563 VEKIDFIHA 571
+ + D A
Sbjct: 402 ILQSDLEEA 410
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 169 bits (428), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 144/250 (57%), Gaps = 8/250 (3%)
Query: 328 TITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVA 386
T +++D+ G++ +E++E VE L P+ Y +G +PP+GV+L G PGTGKTLLAKAVA
Sbjct: 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVA 237
Query: 387 GEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI 446
+ F+ SE ++ Y+G G R +F A + APSI+FIDEIDA+ R+
Sbjct: 238 NQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTK---RYDS 294
Query: 447 VSNDERE--QTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPD 504
S ERE +T+ +LL ++DGFD V V+ ATN+ + LDPAL RPGR DR ++ E PD
Sbjct: 295 NSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPD 354
Query: 505 KIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGXXXXXXXXXXXXXXGRLNKVVVE 564
++ IL +H SK + L++D++L + + +G R ++ V
Sbjct: 355 LSTKKKILGIHTSK--MNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVT 412
Query: 565 KIDFIHAVER 574
DF A ER
Sbjct: 413 AEDFKQAKER 422
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 126/208 (60%), Gaps = 6/208 (2%)
Query: 328 TITFADVAGVDEAKEELE-EIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVA 386
+T+AD+ +++ +EEL I+ +R+PD++ LG P GVLL G PG GKTLLAKAVA
Sbjct: 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVA 65
Query: 387 GEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI 446
E+ + FIS E + +YVG VR +F RAK AP +IF DE+DA+ R R
Sbjct: 66 NESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR--- 122
Query: 447 VSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKI 506
+ +NQLLTEMDG ++ V ++ ATNR D++DPA+ RPGR D+ + V P
Sbjct: 123 -ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA 181
Query: 507 GREAILK-VHVSKKELPLAKDIDLGDIA 533
R AILK + + + PL D++L IA
Sbjct: 182 DRLAILKTITKNGTKPPLDADVNLEAIA 209
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 163 bits (412), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 130/219 (59%), Gaps = 7/219 (3%)
Query: 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLA 382
E + + + DV G + +++E+VE LR P + +G +PPRG+LL G PGTGKTL+A
Sbjct: 196 ESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 383 KAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDG 442
+AVA E F + E + G S +R F A+K AP+IIFIDE+DA+A R+
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315
Query: 443 RFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVET 502
+ + ++QLLT MDG + VIV+ ATNR + +DPALRR GRFDR V +
Sbjct: 316 ----THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI 371
Query: 503 PDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541
PD GR IL++H K + LA D+DL +A+ T G G
Sbjct: 372 PDATGRLEILQIHT--KNMKLADDVDLEQVANETHGHVG 408
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 162 bits (411), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 130/219 (59%), Gaps = 7/219 (3%)
Query: 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLA 382
E + + + D+ G + +++E+VE LR P + +G +PPRG+LL G PGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 383 KAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDG 442
+AVA E F + E + G S +R F A+K AP+IIFIDE+DA+A R+
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315
Query: 443 RFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVET 502
+ + ++QLLT MDG + VIV+ ATNR + +DPALRR GRFDR V +
Sbjct: 316 ----THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI 371
Query: 503 PDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541
PD GR IL++H K + LA D+DL +A+ T G G
Sbjct: 372 PDATGRLEILQIHT--KNMKLADDVDLEQVANETHGHVG 408
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 162 bits (410), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 130/219 (59%), Gaps = 7/219 (3%)
Query: 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLA 382
E + + + D+ G + +++E+VE LR P + +G +PPRG+LL G PGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 383 KAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDG 442
+AVA E F + E + G S +R F A+K AP+IIFIDE+DA+A R+
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315
Query: 443 RFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVET 502
+ + ++QLLT MDG + VIV+ ATNR + +DPALRR GRFDR V +
Sbjct: 316 ----THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI 371
Query: 503 PDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541
PD GR IL++H K + LA D+DL +A+ T G G
Sbjct: 372 PDATGRLEILQIHT--KNMKLADDVDLEQVANETHGHVG 408
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 162 bits (410), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 130/219 (59%), Gaps = 7/219 (3%)
Query: 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLA 382
E + + + D+ G + +++E+VE LR P + +G +PPRG+LL G PGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 383 KAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDG 442
+AVA E F + E + G S +R F A+K AP+IIFIDE+DA+A R+
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315
Query: 443 RFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVET 502
+ + ++QLLT MDG + VIV+ ATNR + +DPALRR GRFDR V +
Sbjct: 316 ----THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI 371
Query: 503 PDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541
PD GR IL++H K + LA D+DL +A+ T G G
Sbjct: 372 PDATGRLEILQIHT--KNMKLADDVDLEQVANETHGHVG 408
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 136/214 (63%), Gaps = 6/214 (2%)
Query: 330 TFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 388
T+ V G+ + +E++E++E ++ P+ + LG P+GV+L G PGTGKTLLA+AVA
Sbjct: 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205
Query: 389 AEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSR-DGRFRIV 447
+ FI S +E V+ Y+G G+ VR+LF A++ APSIIF+DEID++ +R +G
Sbjct: 206 TDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGG-- 263
Query: 448 SNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIG 507
+ E ++T+ +LL ++DGF+++ + ++ ATNR D+LDPAL RPGR DR + P
Sbjct: 264 GDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAA 323
Query: 508 REAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541
R IL++H K + L + I+L +A G +G
Sbjct: 324 RAEILRIHSRK--MNLTRGINLRKVAEKMNGCSG 355
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 130/225 (57%), Gaps = 13/225 (5%)
Query: 321 KVSEQGDTITFADVAGVDEAKEELEEIVEF--LRSPDKYIRLGARPPRGVLLVGLPGTGK 378
++ + G + F D+AG D AK+ L+EIV LR P+ + L A P RG+LL G PG GK
Sbjct: 104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLR-PELFTGLRA-PARGLLLFGPPGNGK 161
Query: 379 TLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAK 438
T+LAKAVA E+ F + SA+ YVG G VR LFA A++ PSIIFID++D++
Sbjct: 162 TMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLC 221
Query: 439 SRDGRFRIVSNDEREQTLNQLLTEMDGFDS--NSAVIVLGATNRSDVLDPALRRPGRFDR 496
R R +D + + L E DG S + V+V+GATNR LD A+ R RF +
Sbjct: 222 ER----REGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIK 275
Query: 497 VVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541
V V P++ R +LK + K+ PL + +L +A MT G++G
Sbjct: 276 RVYVSLPNEETRLLLLKNLLCKQGSPLTQK-ELAQLARMTDGYSG 319
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 136/240 (56%), Gaps = 16/240 (6%)
Query: 307 GQVGHRKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRL---GAR 363
G ++K RG + + + + + DVAG++ AKE L+E V P K+ L +
Sbjct: 11 GGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVIL---PVKFPHLFKGNRK 67
Query: 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKE 423
P G+LL G PGTGK+ LAKAVA EA F S S+S+ V ++G V+ LFA A++
Sbjct: 68 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN 127
Query: 424 APSIIFIDEIDAVAKSR-DGRFRIVSNDEREQTLNQLLTEMDGFDSNS-AVIVLGATNRS 481
PSIIFID++DA+ +R +G ++ + +LL +M+G ++S V+VLGATN
Sbjct: 128 KPSIIFIDQVDALTGTRGEGE-----SEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 182
Query: 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541
LD A+RR RF+R + + PD R + +++V L K+ D + +MT G++G
Sbjct: 183 WQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKE-DYRTLGAMTEGYSG 239
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 128 bits (322), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 136/240 (56%), Gaps = 16/240 (6%)
Query: 307 GQVGHRKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRL---GAR 363
G ++K RG + + + + + DVAG++ AKE L+E V P K+ L +
Sbjct: 26 GGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVIL---PVKFPHLFKGNRK 82
Query: 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKE 423
P G+LL G PGTGK+ LAKAVA EA F S S+S+ V ++G V+ LFA A++
Sbjct: 83 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN 142
Query: 424 APSIIFIDEIDAVAKSR-DGRFRIVSNDEREQTLNQLLTEMDGFDSNS-AVIVLGATNRS 481
PSIIFID++DA+ +R +G ++ + +LL +M+G ++S V+VLGATN
Sbjct: 143 KPSIIFIDQVDALTGTRGEGE-----SEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 197
Query: 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541
LD A+RR RF+R + + PD R + +++V L K+ D + +MT G++G
Sbjct: 198 WQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKE-DYRTLGAMTEGYSG 254
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 127/218 (58%), Gaps = 16/218 (7%)
Query: 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRL---GARPPRGVLLVGLPGTGKTLLAKAV 385
+ + DVAG++ AKE L+E V P K+ L +P G+LL G PGTGK+ LAKAV
Sbjct: 24 VKWEDVAGLEGAKEALKEAVIL---PVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAV 80
Query: 386 AGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSR-DGRF 444
A EA F S S+S+ V ++G V+ LFA A++ PSIIFIDE+DA+ +R +G
Sbjct: 81 ATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGE- 139
Query: 445 RIVSNDEREQTLNQLLTEMDGFDSNS-AVIVLGATNRSDVLDPALRRPGRFDRVVMVETP 503
++ + +LL +M+G ++S V+VLGATN LD A+RR RF+R + + P
Sbjct: 140 ----SEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLP 193
Query: 504 DKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541
D R + +++V L K+ D + +MT G++G
Sbjct: 194 DLAARTTMFEINVGDTPCVLTKE-DYRTLGAMTEGYSG 230
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 134/230 (58%), Gaps = 17/230 (7%)
Query: 317 PGGAKVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRL---GARPPRGVLLVGL 373
P A +SE+ + + + DVAG++ AKE L+E V P K+ L +P G+LL G
Sbjct: 4 PFTAILSEKPN-VKWEDVAGLEGAKEALKEAVIL---PVKFPHLFKGNRKPTSGILLYGP 59
Query: 374 PGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEI 433
PGTGK+ LAKAVA EA F S S+S+ V ++G V+ LFA A++ PSIIFID++
Sbjct: 60 PGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQV 119
Query: 434 DAVAKSR-DGRFRIVSNDEREQTLNQLLTEMDGFDSNS-AVIVLGATNRSDVLDPALRRP 491
DA+ +R +G ++ + +LL +M+G ++S V+VLGATN LD A+RR
Sbjct: 120 DALTGTRGEGE-----SEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR- 173
Query: 492 GRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541
RF+R + + PD R + +++V L K+ D + +MT G++G
Sbjct: 174 -RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKE-DYRTLGAMTEGYSG 221
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 127/222 (57%), Gaps = 21/222 (9%)
Query: 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRL--GARPP-RGVLLVGLPGTGKTLLAKA 384
+ ++DVAG++ AKE L+E V P K+ L G R P RG+LL G PGTGK+ LAKA
Sbjct: 8 NVKWSDVAGLEGAKEALKEAVIL---PIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKA 64
Query: 385 VAGEAE-VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGR 443
VA EA F S S+S+ V ++G V++LF A++ PSIIFIDEID++ SR
Sbjct: 65 VATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR--- 121
Query: 444 FRIVSNDERE---QTLNQLLTEMDGFD-SNSAVIVLGATNRSDVLDPALRRPGRFDRVVM 499
S +E E + + L +M G N ++VLGATN VLD A+RR RF++ +
Sbjct: 122 ----SENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIY 175
Query: 500 VETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541
+ P+ R A+ K+H+ + L + D ++ T G++G
Sbjct: 176 IPLPEPHARAAMFKLHLGTTQNSLT-EADFRELGRKTDGYSG 216
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 125 bits (313), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 86/222 (38%), Positives = 127/222 (57%), Gaps = 21/222 (9%)
Query: 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRL--GARPP-RGVLLVGLPGTGKTLLAKA 384
+ ++DVAG++ AKE L+E V P K+ L G R P RG+LL G PGTGK+ LAKA
Sbjct: 130 NVKWSDVAGLEGAKEALKEAVIL---PIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKA 186
Query: 385 VAGEAE-VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGR 443
VA EA F S S+S+ V ++G V++LF A++ PSIIFIDEID++ SR
Sbjct: 187 VATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR--- 243
Query: 444 FRIVSNDERE---QTLNQLLTEMDGFD-SNSAVIVLGATNRSDVLDPALRRPGRFDRVVM 499
S +E E + + L +M G N ++VLGATN VLD A+RR RF++ +
Sbjct: 244 ----SENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIY 297
Query: 500 VETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541
+ P+ R A+ ++H+ + L + D ++ T G++G
Sbjct: 298 IPLPEAHARAAMFRLHLGSTQNSLT-EADFQELGRKTDGYSG 338
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 130/225 (57%), Gaps = 13/225 (5%)
Query: 321 KVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKT 379
++ + G + + D+AGV+ AK ++EIV + + PD + L PP+G+LL G PGTGKT
Sbjct: 73 EIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRG-PPKGILLFGPPGTGKT 131
Query: 380 LLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKS 439
L+ K +A ++ F S SAS +VG G VR LFA A+ + P++IFIDEID++
Sbjct: 132 LIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQ 191
Query: 440 R-DGRFRIVSNDEREQTLNQLLTEMDGFDSNSA--VIVLGATNRSDVLDPALRRPGRFDR 496
R DG ++ + + L ++DG ++S ++V+GATNR +D A RR R +
Sbjct: 192 RGDGE-----HESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVK 244
Query: 497 VVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541
+ + P+ R+ I+ +SK++ L+++ ++ I + F+G
Sbjct: 245 RLYIPLPEASARKQIVINLMSKEQCCLSEE-EIEQIVQQSDAFSG 288
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 124/226 (54%), Gaps = 14/226 (6%)
Query: 321 KVSEQGDTITFADVAGVDEAKEELEEIVEFLRS--PDKYIRLGARPPRGVLLVGLPGTGK 378
++ E G + + D+AG D AK+ L+E+V L S P+ + L A P +G+LL G PG GK
Sbjct: 10 EIVEGGAKVEWTDIAGQDVAKQALQEMV-ILPSVRPELFTGLRA-PAKGLLLFGPPGNGK 67
Query: 379 TLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAK 438
TLLA+AVA E F++ SA+ YVG G VR LFA A+ PSIIFIDE+D++
Sbjct: 68 TLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLS 127
Query: 439 SRDGRFRIVSNDEREQTLNQLLTEMDGFDSN---SAVIVLGATNRSDVLDPALRRPGRFD 495
R ++ + + L E DG N ++VL ATNR LD A R RF
Sbjct: 128 ER----SSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFT 181
Query: 496 RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541
+ V V PD+ RE +L + K+ PL + L +A +T G++G
Sbjct: 182 KRVYVSLPDEQTRELLLNRLLQKQGSPLDTEA-LRRLAKITDGYSG 226
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGA-SRVRDLFARA-- 420
P+ +L++G G GKT +A+ +A A PFI A++F E+ YVG S +RDL A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGG 109
Query: 421 ---KKEAPSIIFIDEIDAVAK 438
E I+FIDEID + K
Sbjct: 110 AIDAVEQNGIVFIDEIDKICK 130
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGASRVRDLFARA----- 420
+LL+G G+GKTL+A+ +A ++P A+ E YVG + +A
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 133
Query: 421 KKEAPSIIFIDEIDAVAKSRDGR--FRIVSNDEREQTL 456
+K I+FIDEID +++ + R R VS + +Q L
Sbjct: 134 QKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQAL 171
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGASR-VRDLFARA----K 421
+LL+G G+GKTLLA+ +A +VPF A+ E YVG ++ L + +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 422 KEAPSIIFIDEIDAVAKSRDGR--FRIVSNDEREQTLNQLL 460
K I++ID+ID +++ D R VS + +Q L +L+
Sbjct: 114 KAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLI 154
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGASR-VRDLFARA----K 421
+LL+G G+GKTLLA+ +A +VPF A+ E YVG ++ L + +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 422 KEAPSIIFIDEIDAVAKSRDGR--FRIVSNDEREQTLNQLL 460
K I++ID+ID +++ D R VS + +Q L +L+
Sbjct: 114 KAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLI 154
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGA-SRVRDLFARAKK 422
P+ +L++G G GKT +A+ +A A PFI A++F E+ YVG S +RDL A K
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMK 109
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGA-SRVRDLFARAKK 422
P+ +L++G G GKT +A+ +A A PFI A++F E+ YVG S +RDL A K
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVK 108
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGA-SRVRDLFARAKK 422
P+ +L++G G GKT +A+ +A A PFI A++F E+ YVG S +RDL A K
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVK 115
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGA-SRVRDLFARAKK 422
P+ +L++G G GKT +A+ +A A PFI A++F E+ YVG S +RDL A K
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVK 109
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGA-SRVRDLFARAKK 422
P+ +L +G G GKT +A+ +A A PFI A++F E+ YVG S +RDL A K
Sbjct: 50 PKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAXK 109
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-CSASEFVELYVGMGASRVRDLFARAKK 422
P VLL G P +GKT LA +A E+ PFI CS + + ++ +F A K
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYK 121
Query: 423 EAPSIIFIDEID 434
S + +D+I+
Sbjct: 122 SQLSCVVVDDIE 133
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-CSASEFVELYVGMGASRVRDLFARAKK 422
P VLL G P +GKT LA +A E+ PFI CS + + ++ +F A K
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYK 122
Query: 423 EAPSIIFIDEID 434
S + +D+I+
Sbjct: 123 SQLSCVVVDDIE 134
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 356 KYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE--AEVPFISCSASEFVELYV----GMG 409
+ IR G R VL+ G PGTGKT +A +A + PF + + SE L + +
Sbjct: 61 EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALT 120
Query: 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDERE 453
+ R + R K A + + EID + G + S D E
Sbjct: 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGE 164
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE--AEV 391
+ G + A+E IVE ++S R VLL G PGTGKT LA A+A E ++V
Sbjct: 39 LVGQENAREACGVIVELIKSK-------KMAGRAVLLAGPPGTGKTALALAIAQELGSKV 91
Query: 392 PFISCSASE 400
PF SE
Sbjct: 92 PFCPMVGSE 100
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE--AEV 391
+ G + A+E IVE ++S R VLL G PGTGKT LA A+A E ++V
Sbjct: 53 LVGQENAREACGVIVELIKSKKX-------AGRAVLLAGPPGTGKTALALAIAQELGSKV 105
Query: 392 PFISCSASE 400
PF SE
Sbjct: 106 PFCPXVGSE 114
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 9/105 (8%)
Query: 358 IRLGARPPRGVLLVGLPGTGKTLLAKAVAGE--AEVPFISCSASEFVELYV----GMGAS 411
IR G R VL+ G PGTGKT +A A + PF + + SE L + +
Sbjct: 78 IREGKIAGRAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEALTQA 137
Query: 412 RVRDLFARAKKEAPSIIF---IDEIDAVAKSRDGRFRIVSNDERE 453
R + R K+ P ++ + EID + G + S D E
Sbjct: 138 FRRSIGVRIKEGPPGVVHTVSLHEIDVINSRTQGFLALFSGDTGE 182
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 368 VLLVGLPGTGKTLLAKAVA--GEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAP 425
++L G PGTGKT LA+ +A A+V IS S G +R+ RA++
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISAVTS---------GVKEIREAIERARQNRN 103
Query: 426 ----SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473
+I+F+DE+ KS+ F + ++ T TE F+ NSA++
Sbjct: 104 AGRRTILFVDEVHRFNKSQQDAF-LPHIEDGTITFIGATTENPSFELNSALL 154
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 26/200 (13%)
Query: 316 GPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVG 372
G G +V E+ D ++ G+ K+ + E L +LG P + G
Sbjct: 12 GSGAKEVLEELDR----ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTG 67
Query: 373 LPGTGKTLLAKAVAG-------EAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAP 425
PGTGKT +A +AG + +S + + V Y+G A + +++ RA
Sbjct: 68 NPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMG--- 124
Query: 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485
++FIDE + + + R D ++ + LL M+ + VI+ G +R +
Sbjct: 125 GVLFIDEAYYLYRPDNER------DYGQEAIEILLQVMENNRDDLVVILAGYADRMENFF 178
Query: 486 PALRRPGRFDRVV-MVETPD 504
+ PG R+ +E PD
Sbjct: 179 QS--NPGFRSRIAHHIEFPD 196
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 26/200 (13%)
Query: 316 GPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVG 372
G G +V E+ D ++ G+ K+ + E L +LG P + G
Sbjct: 19 GSGAKEVLEELDR----ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTG 74
Query: 373 LPGTGKTLLAKAVAG-------EAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAP 425
PGTGKT +A +AG + +S + + V Y+G A + +++ RA
Sbjct: 75 NPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMG--- 131
Query: 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485
++FIDE + + + R D ++ + LL M+ + VI+ G +R +
Sbjct: 132 GVLFIDEAYYLYRPDNER------DYGQEAIEILLQVMENNRDDLVVILAGYADRMENFF 185
Query: 486 PALRRPGRFDRVV-MVETPD 504
+ PG R+ +E PD
Sbjct: 186 QS--NPGFRSRIAHHIEFPD 203
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 357 YIRLGARPPRGVLLVGLPGTGK-TLLAKAVAGE--AEVPFISCSAS-------EFVELYV 406
+ RL A+ +L+VGL GK T+L K GE +P I + F V
Sbjct: 12 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 71
Query: 407 GMGASRVRDLFARAKKEAPSIIFI---DEIDAVAKSRDGRFRIVSNDE 451
G G ++R L+ + +IF+ ++ D V ++RD R+++ DE
Sbjct: 72 G-GQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE 118
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 32/158 (20%)
Query: 345 EEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE-----AEVPFISCSAS 399
E IV+ L+ Y++ G+ P +L G PG GKT A A+A E F+ +AS
Sbjct: 31 EHIVKRLKH---YVKTGSMP--HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS 85
Query: 400 EFVELYVGMGASRVRDLFARAKK---EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456
+ E + + +V++ FAR K + IIF+DE DA+ + + +Q L
Sbjct: 86 D--ERGINVIREKVKE-FARTKPIGGASFKIIFLDEADALTQ------------DAQQAL 130
Query: 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRF 494
+ M+ F SN I L S +++P R F
Sbjct: 131 RRT---MEMFSSNVRFI-LSCNYSSKIIEPIQSRCAIF 164
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Query: 368 VLLVGLPGTGK-TLLAKAVAGE--AEVPFISCSAS-------EFVELYVGMGASRVRDLF 417
+L+VGL G GK T+L K GE +P I + F VG G R+R L+
Sbjct: 20 ILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVG-GQDRIRSLW 78
Query: 418 ARAKKEAPSIIFIDEIDAVAKSRDGRFRIV 447
+ +IF+ ID+ +SR G R V
Sbjct: 79 RHYYRNTEGVIFV--IDSNDRSRIGEAREV 106
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 358 IRLGARPPRGVLLVGLPGTGKTLLAKAVA 386
I+ A R VLL+G PGTGK++L +A+A
Sbjct: 53 IKTAANQKRHVLLIGEPGTGKSMLGQAMA 81
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Query: 368 VLLVGLPGTGK-TLLAKAVAGE--AEVPFISCSAS-------EFVELYVGMGASRVRDLF 417
+L+VGL G GK T+L K GE +P I + F VG G R+R L+
Sbjct: 3 ILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVG-GQDRIRSLW 61
Query: 418 ARAKKEAPSIIFIDEIDAVAKSRDGRFRIV 447
+ +IF+ +D+ +SR G R V
Sbjct: 62 RHYYRNTEGVIFV--VDSNDRSRIGEAREV 89
>pdb|2RHM|A Chain A, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|B Chain B, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|C Chain C, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|D Chain D, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
Length = 193
Score = 32.3 bits (72), Expect = 0.75, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARA 420
G + P +++ G P TGKT L++A+A +P +S A + V + G+G S R+ R
Sbjct: 1 GXQTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVX-FDGLGWSD-REWSRRV 58
Query: 421 KKEAPSIIFIDEIDAVAKSR----DGRFRIVSNDEREQTLNQL 459
A ++ + + + FR+ + ER Q L+ +
Sbjct: 59 GATAIXXLYHTAATILQSGQSLIXESNFRVDLDTERXQNLHTI 101
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 369 LLVGLPGTGKTLLAKAVAG---EAEVPFISCSASEFV---------ELYVGMGASRVRDL 416
LLVG G GKT +A+ +A + +VP + + + Y G R + L
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 417 FARAKKEAPSIIFIDEIDAV 436
+ +++ SI+FIDEI +
Sbjct: 271 LKQLEQDTNSILFIDEIHTI 290
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Query: 368 VLLVGLPGTGK-TLLAKAVAGE--AEVPFISCSAS-------EFVELYVGMGASRVRDLF 417
+L+VGL G GK T+L K GE +P I + F VG G R+R L+
Sbjct: 20 ILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVG-GQDRIRSLW 78
Query: 418 ARAKKEAPSIIFIDEIDAVAKSRDGRFRIV 447
+ +IF+ +D+ +SR G R V
Sbjct: 79 RHYYRNTEGVIFV--VDSNDRSRIGEAREV 106
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 17/127 (13%)
Query: 316 GPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLG---ARPPRGVLLVG 372
G G +V E+ D ++ G+ K+ + E L +LG P G
Sbjct: 19 GSGAKEVLEELDR----ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHXSFTG 74
Query: 373 LPGTGKTLLAKAVAG-------EAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAP 425
PGTGKT +A AG + +S + + V Y+G A + +++ RA
Sbjct: 75 NPGTGKTTVALKXAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAXG--- 131
Query: 426 SIIFIDE 432
++FIDE
Sbjct: 132 GVLFIDE 138
>pdb|4FXQ|A Chain A, Full-Length Certhrax Toxin From Bacillus Cereus In Complex
With Inhibitor P6
pdb|4FXQ|B Chain B, Full-Length Certhrax Toxin From Bacillus Cereus In Complex
With Inhibitor P6
pdb|4GF1|A Chain A, Crystal Structure Of Certhrax
pdb|4GF1|B Chain B, Crystal Structure Of Certhrax
Length = 460
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGR 443
VE+Y +G + +RD F +KE + FI+ I+ V + ++G+
Sbjct: 91 VEVYYELGKAIIRDTFPLNQKELGNPKFINAINEVNQQKEGK 132
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 15/91 (16%)
Query: 368 VLLVGLPGTGK-TLLAKAVAGE--AEVPFIS--------CSASEFVELYVGMGASRVRDL 416
+L+VGL G GK T+L K GE +P I C+ S F VG G R+R L
Sbjct: 20 ILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYCNIS-FTVWDVG-GQDRIRSL 77
Query: 417 FARAKKEAPSIIFIDEIDAVAKSRDGRFRIV 447
+ +IF+ +D+ +SR G R V
Sbjct: 78 WRHYYCNTEGVIFV--VDSNDRSRIGEAREV 106
>pdb|2J28|9 Chain 9, Model Of E. Coli Srp Bound To 70s Rncs
Length = 430
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 346 EIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKT 379
E+V + ++ + L A+PP VL+ GL G GKT
Sbjct: 80 ELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKT 113
>pdb|2XXA|A Chain A, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|C Chain C, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 433
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 346 EIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKT 379
E+V + ++ + L A+PP VL+ GL G GKT
Sbjct: 81 ELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKT 114
>pdb|3VAA|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|C Chain C, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
Length = 199
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397
+ L G G GKT L KA A + VPFI
Sbjct: 28 IFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57
>pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani.
pdb|1QB8|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCC|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCD|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
Length = 236
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390
FADV+ + E+ E L+ I +FL R A P ++G G L +A E E
Sbjct: 41 FADVSSITESPETLKAIRDFLVQ-----RYRAMSPAPTHILGFDARG-FLFGPMIAVELE 94
Query: 391 VPFI 394
+PF+
Sbjct: 95 IPFV 98
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 360 LGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398
+ P R V+++G+ G+GKT +A VA E + F A
Sbjct: 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADA 62
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE---------LYVGMGASRVRDLFA 418
+ L G PG GKT LAK++A F+ S + YVG R+
Sbjct: 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMK 170
Query: 419 RAKKEAPSIIFIDEIDAVA 437
+A K P + +DEID ++
Sbjct: 171 KAGKLNP-VFLLDEIDKMS 188
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 363 RPPRGVLLVGLPGTGKTLLAKAVA----GEAEVPFISCSASEFVELYVGMGASRVRDLFA 418
RP + +G G GKT LA+A+A G+ E I SE++E + G L
Sbjct: 519 RPIGSFIFLGPTGVGKTELARALAESIFGDEE-SMIRIDMSEYMEKHSTSGGQ----LTE 573
Query: 419 RAKKEAPSIIFIDEID 434
+ +++ S++ +D I+
Sbjct: 574 KVRRKPYSVVLLDAIE 589
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 360 LGARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFI----SCSASEFVELYVGMGASR 412
L R +L+G PG GKT +A+ +A + EVP I + Y G R
Sbjct: 196 LSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDR 255
Query: 413 VRDLFARAKKEAPSIIFID-EIDA 435
++ + ++ I+FID IDA
Sbjct: 256 LKKVMDEIRQAGNIILFIDAAIDA 279
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 47/124 (37%), Gaps = 23/124 (18%)
Query: 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA 389
T +V G DE + L+ VE P +L G PGTGKT A A+A +
Sbjct: 15 TLDEVVGQDEVIQRLKGYVERKNIPH------------LLFSGPPGTGKTATAIALARDL 62
Query: 390 EVPFISCSASEFVELYVG--MGASRVRDLFARAKKEAP------SIIFIDEIDAVAKSRD 441
F F+E+ G VR + AP IIF+DE DA+
Sbjct: 63 ---FGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQ 119
Query: 442 GRFR 445
R
Sbjct: 120 AALR 123
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 345 EEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVA 386
EE+V+ L K + L + +LLVG+ G+GKT A +A
Sbjct: 79 EELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLA 120
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 345 EEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVA 386
EE+V+ L K + L + +LLVG+ G+GKT A +A
Sbjct: 79 EELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLA 120
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 47/124 (37%), Gaps = 23/124 (18%)
Query: 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA 389
T +V G DE + L+ VE P +L G PGTGKT A A+A +
Sbjct: 15 TLDEVVGQDEVIQRLKGYVERKNIPH------------LLFSGPPGTGKTATAIALARDL 62
Query: 390 EVPFISCSASEFVELYVG--MGASRVRDLFARAKKEAP------SIIFIDEIDAVAKSRD 441
F F+E+ G VR + AP IIF+DE DA+
Sbjct: 63 ---FGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQ 119
Query: 442 GRFR 445
R
Sbjct: 120 AALR 123
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 365 PRGV--LLVGLPGTGKTLLAKAVAGEAE 390
P+G+ L+ G PGTGKT +A+ +A E +
Sbjct: 8 PKGINILITGTPGTGKTSMAEMIAAELD 35
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 368 VLLVGLPGTGKTLLAKAVAGEAEVPFIS 395
+LL G PG GKT L K +A ++ + +I+
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYIN 34
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 368 VLLVGLPGTGKTLLAKAVAGEAEVPFIS 395
+LL G PG GKT L K +A ++ + +I+
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYIN 41
>pdb|3NTT|A Chain A, Structural Insights Of Adeno-Associated Virus 5. A Gene
Therapy Vector For Cystic Fibrosis
Length = 724
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 15/93 (16%)
Query: 160 MRLLRPGIPLPGSEPRTSTTFVSVPYSDFLSKINSNQVAKVEVDGVHIMFKLKNDGSIQE 219
M L++ P+PG+ T+F VP S F+++ ++ QV V + ++LK + S +
Sbjct: 635 MMLIK-NTPVPGN----ITSFSDVPVSSFITQYSTGQVT------VEMEWELKKENSKRW 683
Query: 220 SEVI--TNKFQESESLLKSVTPTKRIVYTTTRP 250
+ I TN + + + P Y TTRP
Sbjct: 684 NPEIQYTNNYNDPQ--FVDFAPDSTGEYRTTRP 714
>pdb|1VMA|A Chain A, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
pdb|1VMA|B Chain B, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
Length = 306
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 339 EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKT 379
+A E L+EI+ + + D + + PP +++VG+ GTGKT
Sbjct: 78 DALESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKT 118
>pdb|3A4L|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4L|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3AM1|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Anticodon-StemLOOP TRUNCATED TRNA(SEC)
Length = 260
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 36/180 (20%)
Query: 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSI 427
++L GLPG GK+ +K +A +S + + + L G+ +R+ F K++
Sbjct: 7 IILTGLPGVGKSTFSKNLA-----KILSKNNIDVIVL----GSDLIRESFPVWKEKYEEF 57
Query: 428 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ-LLTEMDGFDSNSAVIVLGATNRSDVLDP 486
I + + + IV + ++ + L+ ++ N A+I L A+ LD
Sbjct: 58 IKKSTYRLIDSALKNYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKAS-----LDV 112
Query: 487 ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKE-------------LPLAKDIDLGDIA 533
+RR +E +KI E I K++ E + KDID +IA
Sbjct: 113 LIRRN--------IERGEKIPNEVIKKMYEKFDEPGKKYKWDEPFLIIDTTKDIDFNEIA 164
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSI 427
VLL G PG GKT LA +A E + S V+ G A+ + L E +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--QGDMAAILTSL------ERGDV 105
Query: 428 IFIDEIDAVAKS 439
+FIDEI + K+
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSI 427
VLL G PG GKT LA +A E + S V+ G A+ + L E +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--QGDMAAILTSL------ERGDV 105
Query: 428 IFIDEIDAVAKS 439
+FIDEI + K+
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSI 427
VLL G PG GKT LA +A E + S V+ G A+ + L E +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--QGDMAAILTSL------ERGDV 105
Query: 428 IFIDEIDAVAKS 439
+FIDEI + K+
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSI 427
VLL G PG GKT LA +A E + S V+ G A+ + L E +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--QGDMAAILTSL------ERGDV 105
Query: 428 IFIDEIDAVAKS 439
+FIDEI + K+
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
Marinus
Length = 216
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 368 VLLVGLPGTGKTLLAKAVAGEAEVPFIS 395
++L+GLPG GK A+ + + E+P IS
Sbjct: 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIS 30
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSI 427
VLL G PG GKT LA +A E + S V+ G A+ + L E +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--QGDMAAILTSL------ERGDV 105
Query: 428 IFIDEIDAVAKS 439
+FIDEI + K+
Sbjct: 106 LFIDEIHRLNKA 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,038,347
Number of Sequences: 62578
Number of extensions: 620261
Number of successful extensions: 2099
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1937
Number of HSP's gapped (non-prelim): 114
length of query: 641
length of database: 14,973,337
effective HSP length: 105
effective length of query: 536
effective length of database: 8,402,647
effective search space: 4503818792
effective search space used: 4503818792
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)