Query 006535
Match_columns 641
No_of_seqs 599 out of 3745
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 00:42:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006535.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006535hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0465 HflB ATP-dependent Zn 100.0 1.7E-72 3.7E-77 627.0 37.5 414 181-627 23-438 (596)
2 KOG0731 AAA+-type ATPase conta 100.0 5E-67 1.1E-71 591.7 39.6 298 324-626 303-600 (774)
3 KOG0734 AAA+-type ATPase conta 100.0 6.5E-68 1.4E-72 569.3 25.7 294 323-626 295-588 (752)
4 CHL00176 ftsH cell division pr 100.0 2.6E-58 5.6E-63 524.7 41.0 421 178-627 47-470 (638)
5 COG1222 RPT1 ATP-dependent 26S 100.0 9.1E-58 2E-62 475.7 26.8 255 323-580 142-397 (406)
6 KOG0730 AAA+-type ATPase [Post 100.0 1.2E-55 2.5E-60 487.2 30.3 326 243-580 323-679 (693)
7 PRK10733 hflB ATP-dependent me 100.0 1.3E-53 2.7E-58 489.4 46.8 410 182-628 31-441 (644)
8 KOG0733 Nuclear AAA ATPase (VC 100.0 3.9E-54 8.5E-59 469.1 30.2 337 242-582 331-776 (802)
9 TIGR01241 FtsH_fam ATP-depende 100.0 1.3E-50 2.8E-55 452.5 36.5 300 321-627 44-343 (495)
10 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.3E-47 2.8E-52 457.8 27.4 260 354-630 1619-1925(2281)
11 KOG0729 26S proteasome regulat 100.0 2.4E-45 5.3E-50 369.1 18.8 258 323-583 168-426 (435)
12 KOG0727 26S proteasome regulat 100.0 2.8E-44 6.2E-49 359.3 23.7 251 324-577 147-398 (408)
13 KOG0736 Peroxisome assembly fa 100.0 1.7E-44 3.7E-49 401.8 24.2 251 324-579 664-936 (953)
14 KOG0733 Nuclear AAA ATPase (VC 100.0 1.2E-44 2.6E-49 395.1 22.0 227 326-558 184-414 (802)
15 KOG0728 26S proteasome regulat 100.0 2.3E-44 5E-49 359.5 21.8 252 324-578 139-391 (404)
16 KOG0652 26S proteasome regulat 100.0 8.2E-44 1.8E-48 357.3 20.2 251 324-577 163-414 (424)
17 COG1223 Predicted ATPase (AAA+ 100.0 4.7E-43 1E-47 351.9 21.5 243 323-575 112-355 (368)
18 KOG0726 26S proteasome regulat 100.0 1E-43 2.2E-48 361.0 16.8 253 324-579 177-430 (440)
19 KOG0738 AAA+-type ATPase [Post 100.0 8.6E-43 1.9E-47 365.5 23.7 249 324-580 204-474 (491)
20 PTZ00454 26S protease regulato 100.0 1.3E-41 2.9E-46 369.8 29.3 252 324-578 137-389 (398)
21 TIGR01243 CDC48 AAA family ATP 100.0 1.6E-40 3.5E-45 387.2 29.3 251 324-579 445-714 (733)
22 PRK03992 proteasome-activating 100.0 2.7E-40 5.8E-45 359.4 28.8 255 324-581 123-378 (389)
23 KOG0735 AAA+-type ATPase [Post 100.0 2.3E-40 4.9E-45 366.0 23.7 225 328-558 663-888 (952)
24 COG0464 SpoVK ATPases of the A 100.0 5.8E-40 1.3E-44 366.5 26.0 298 273-576 180-484 (494)
25 PTZ00361 26 proteosome regulat 100.0 7.4E-40 1.6E-44 359.0 25.8 252 324-578 175-427 (438)
26 CHL00195 ycf46 Ycf46; Provisio 100.0 4.2E-38 9.1E-43 349.6 26.7 243 327-577 223-465 (489)
27 KOG0739 AAA+-type ATPase [Post 100.0 3E-39 6.5E-44 329.3 13.5 228 323-558 124-353 (439)
28 TIGR01242 26Sp45 26S proteasom 100.0 1.9E-37 4.2E-42 334.0 27.9 249 324-575 114-363 (364)
29 KOG0737 AAA+-type ATPase [Post 100.0 1.5E-37 3.3E-42 326.0 22.1 228 323-558 83-314 (386)
30 KOG0651 26S proteasome regulat 100.0 6.4E-38 1.4E-42 321.5 13.7 250 325-577 125-375 (388)
31 TIGR03689 pup_AAA proteasome A 100.0 2.6E-35 5.6E-40 327.5 26.6 255 322-580 172-483 (512)
32 KOG0741 AAA+-type ATPase [Post 100.0 1.1E-33 2.4E-38 305.3 15.5 252 325-578 212-493 (744)
33 KOG0732 AAA+-type ATPase conta 100.0 3E-33 6.5E-38 324.5 18.5 250 326-580 259-530 (1080)
34 KOG0730 AAA+-type ATPase [Post 100.0 1.4E-32 3.1E-37 304.5 21.2 237 327-577 180-418 (693)
35 TIGR01243 CDC48 AAA family ATP 100.0 5.2E-32 1.1E-36 315.9 26.0 246 326-577 172-437 (733)
36 PLN00020 ribulose bisphosphate 100.0 1.1E-31 2.4E-36 284.4 22.4 262 327-606 110-394 (413)
37 KOG0740 AAA+-type ATPase [Post 100.0 3.7E-31 8E-36 285.9 17.2 248 323-578 144-407 (428)
38 CHL00181 cbbX CbbX; Provisiona 99.9 4.9E-22 1.1E-26 208.3 22.1 212 331-556 22-255 (287)
39 TIGR02881 spore_V_K stage V sp 99.9 7E-22 1.5E-26 203.9 21.0 212 330-556 4-239 (261)
40 KOG0742 AAA+-type ATPase [Post 99.9 7.4E-22 1.6E-26 209.0 20.3 239 327-577 350-614 (630)
41 TIGR02880 cbbX_cfxQ probable R 99.9 1.2E-21 2.6E-26 205.1 20.6 211 333-557 23-255 (284)
42 PF00004 AAA: ATPase family as 99.9 1.2E-21 2.6E-26 178.2 13.4 130 368-502 1-132 (132)
43 KOG0743 AAA+-type ATPase [Post 99.9 2.5E-21 5.3E-26 208.9 17.2 207 328-547 197-412 (457)
44 TIGR00635 ruvB Holliday juncti 99.8 2.8E-19 6.1E-24 187.5 22.3 211 330-574 2-228 (305)
45 PRK00080 ruvB Holliday junctio 99.8 1.7E-19 3.6E-24 192.2 20.6 219 326-575 19-250 (328)
46 PF05496 RuvB_N: Holliday junc 99.8 6.8E-20 1.5E-24 184.0 13.3 197 322-552 14-226 (233)
47 KOG0744 AAA+-type ATPase [Post 99.8 1.9E-19 4.1E-24 186.7 14.7 241 331-575 141-414 (423)
48 COG2256 MGS1 ATPase related to 99.8 1.7E-18 3.8E-23 184.5 19.5 210 323-577 15-240 (436)
49 KOG0735 AAA+-type ATPase [Post 99.8 1.2E-18 2.6E-23 194.6 18.7 233 332-577 408-650 (952)
50 KOG0736 Peroxisome assembly fa 99.8 2.8E-18 6.2E-23 193.1 18.8 221 346-575 412-653 (953)
51 TIGR02639 ClpA ATP-dependent C 99.8 4.4E-18 9.5E-23 199.1 19.0 224 327-576 177-430 (731)
52 COG0464 SpoVK ATPases of the A 99.8 1.2E-17 2.7E-22 187.1 21.6 219 351-577 4-228 (494)
53 COG2255 RuvB Holliday junction 99.8 1.1E-17 2.4E-22 171.6 17.9 216 326-575 20-251 (332)
54 TIGR02902 spore_lonB ATP-depen 99.8 7.6E-18 1.7E-22 190.4 17.5 218 321-574 54-331 (531)
55 TIGR00763 lon ATP-dependent pr 99.7 1.5E-17 3.2E-22 195.8 17.0 199 332-552 320-551 (775)
56 PRK00149 dnaA chromosomal repl 99.7 4.5E-17 9.9E-22 180.7 19.8 225 326-576 116-350 (450)
57 PRK14962 DNA polymerase III su 99.7 8.9E-17 1.9E-21 179.1 20.3 207 324-573 6-240 (472)
58 TIGR00362 DnaA chromosomal rep 99.7 1.6E-16 3.6E-21 173.8 21.9 223 327-576 105-338 (405)
59 PRK14956 DNA polymerase III su 99.7 1.1E-16 2.3E-21 177.1 20.3 213 323-572 9-243 (484)
60 PRK11034 clpA ATP-dependent Cl 99.7 2E-16 4.3E-21 184.6 21.9 221 330-576 184-434 (758)
61 PRK13342 recombination factor 99.7 2.5E-16 5.4E-21 173.1 19.6 204 325-576 5-220 (413)
62 PRK04195 replication factor C 99.7 2.6E-16 5.6E-21 176.2 20.0 210 324-572 6-222 (482)
63 TIGR02928 orc1/cdc6 family rep 99.7 1.7E-15 3.7E-20 162.6 25.4 224 329-576 12-275 (365)
64 PRK14088 dnaA chromosomal repl 99.7 4E-16 8.7E-21 172.8 20.4 225 326-577 99-334 (440)
65 PRK14961 DNA polymerase III su 99.7 5.2E-16 1.1E-20 167.9 20.4 213 324-573 8-242 (363)
66 PRK06645 DNA polymerase III su 99.7 7.8E-16 1.7E-20 172.5 20.9 217 323-573 12-254 (507)
67 PRK00411 cdc6 cell division co 99.7 3.7E-15 8E-20 161.7 25.6 242 329-593 27-301 (394)
68 PRK14960 DNA polymerase III su 99.7 6E-16 1.3E-20 175.7 19.7 205 324-571 7-239 (702)
69 PRK06893 DNA replication initi 99.7 1.2E-15 2.6E-20 154.9 19.7 211 327-572 11-227 (229)
70 PRK12323 DNA polymerase III su 99.7 2.8E-16 6.2E-21 177.9 16.1 198 324-554 8-232 (700)
71 PRK07003 DNA polymerase III su 99.7 4.9E-16 1.1E-20 178.0 18.1 199 324-555 8-228 (830)
72 PRK14958 DNA polymerase III su 99.7 5.3E-16 1.2E-20 174.4 17.4 206 324-572 8-241 (509)
73 TIGR03420 DnaA_homol_Hda DnaA 99.7 1.1E-15 2.3E-20 153.1 17.7 205 328-572 11-225 (226)
74 PRK14086 dnaA chromosomal repl 99.7 2E-15 4.4E-20 171.1 21.1 226 326-577 282-517 (617)
75 CHL00095 clpC Clp protease ATP 99.7 1.4E-15 3E-20 180.2 19.8 202 329-557 176-403 (821)
76 PRK13341 recombination factor 99.7 1.8E-15 3.9E-20 175.9 20.0 213 323-575 19-247 (725)
77 PRK12422 chromosomal replicati 99.7 3E-15 6.5E-20 165.9 20.9 227 326-577 105-345 (445)
78 PRK14964 DNA polymerase III su 99.7 2E-15 4.4E-20 168.2 19.6 204 325-571 6-237 (491)
79 TIGR03345 VI_ClpV1 type VI sec 99.7 1.4E-15 2.9E-20 180.3 18.8 218 327-571 182-427 (852)
80 PRK12402 replication factor C 99.7 3.4E-15 7.4E-20 158.0 19.9 212 324-574 7-248 (337)
81 PRK14963 DNA polymerase III su 99.7 3.1E-15 6.8E-20 168.0 20.5 205 324-572 6-237 (504)
82 PRK14949 DNA polymerase III su 99.7 2.6E-15 5.7E-20 174.8 20.3 198 323-553 7-226 (944)
83 PRK07994 DNA polymerase III su 99.7 1.5E-15 3.3E-20 173.8 18.1 206 324-572 8-241 (647)
84 PRK08903 DnaA regulatory inact 99.7 3.9E-15 8.4E-20 150.1 18.7 202 327-573 13-224 (227)
85 PLN03025 replication factor C 99.7 2.6E-15 5.7E-20 159.5 17.8 202 324-570 5-218 (319)
86 PRK08691 DNA polymerase III su 99.7 2.2E-15 4.8E-20 172.3 18.2 213 324-573 8-242 (709)
87 TIGR02397 dnaX_nterm DNA polym 99.6 4.6E-15 9.9E-20 158.5 18.9 207 324-573 6-240 (355)
88 PRK05563 DNA polymerase III su 99.6 4.9E-15 1.1E-19 168.6 20.1 205 324-571 8-240 (559)
89 PRK14951 DNA polymerase III su 99.6 5.8E-15 1.3E-19 168.6 20.0 212 324-572 8-246 (618)
90 PRK08084 DNA replication initi 99.6 1.8E-14 3.9E-19 147.0 21.0 206 327-572 17-233 (235)
91 PHA02544 44 clamp loader, smal 99.6 1.5E-14 3.2E-19 152.7 20.0 206 324-570 13-226 (316)
92 KOG2028 ATPase related to the 99.6 1E-14 2.3E-19 153.5 18.0 213 322-576 128-369 (554)
93 PRK14970 DNA polymerase III su 99.6 1.1E-14 2.4E-19 157.3 18.2 213 324-573 9-231 (367)
94 PRK14969 DNA polymerase III su 99.6 8.4E-15 1.8E-19 165.6 18.0 212 325-573 9-242 (527)
95 PTZ00112 origin recognition co 99.6 2.1E-14 4.5E-19 165.4 20.6 221 331-578 754-1009(1164)
96 PRK14959 DNA polymerase III su 99.6 1.2E-14 2.6E-19 165.3 18.4 207 323-572 7-241 (624)
97 PRK14952 DNA polymerase III su 99.6 1.1E-14 2.3E-19 165.8 17.7 212 324-571 5-240 (584)
98 PRK14957 DNA polymerase III su 99.6 1.2E-14 2.6E-19 164.1 17.7 205 324-571 8-240 (546)
99 COG0466 Lon ATP-dependent Lon 99.6 1.1E-14 2.3E-19 164.4 17.0 223 332-576 323-585 (782)
100 PF00308 Bac_DnaA: Bacterial d 99.6 2.1E-14 4.5E-19 145.2 17.4 201 327-555 3-216 (219)
101 PRK07133 DNA polymerase III su 99.6 2.6E-14 5.7E-19 164.8 20.3 213 323-572 9-240 (725)
102 PRK10865 protein disaggregatio 99.6 1.8E-14 3.8E-19 171.2 19.3 166 327-518 173-356 (857)
103 PRK14965 DNA polymerase III su 99.6 1.2E-14 2.5E-19 166.1 17.1 205 324-571 8-240 (576)
104 PRK07764 DNA polymerase III su 99.6 1.8E-14 3.9E-19 169.5 18.9 211 324-570 7-241 (824)
105 PRK05896 DNA polymerase III su 99.6 1.4E-14 3.1E-19 164.1 17.3 206 323-571 7-240 (605)
106 PRK14087 dnaA chromosomal repl 99.6 3.8E-14 8.2E-19 157.5 19.9 221 328-575 111-348 (450)
107 TIGR03346 chaperone_ClpB ATP-d 99.6 3E-14 6.4E-19 169.5 20.0 204 327-557 168-398 (852)
108 PRK14953 DNA polymerase III su 99.6 4.7E-14 1E-18 158.0 20.3 212 324-572 8-241 (486)
109 PRK08451 DNA polymerase III su 99.6 4.9E-14 1.1E-18 158.6 20.3 205 324-571 6-238 (535)
110 PRK14955 DNA polymerase III su 99.6 1.7E-14 3.6E-19 158.0 16.2 217 323-572 7-254 (397)
111 PRK08727 hypothetical protein; 99.6 4.3E-14 9.4E-19 144.0 18.0 181 366-574 42-230 (233)
112 PRK05642 DNA replication initi 99.6 7.7E-14 1.7E-18 142.3 19.6 180 365-572 45-232 (234)
113 PRK06647 DNA polymerase III su 99.6 4.9E-14 1.1E-18 160.2 19.7 212 324-572 8-241 (563)
114 PRK09111 DNA polymerase III su 99.6 6.7E-14 1.4E-18 160.0 20.5 214 323-573 15-255 (598)
115 PRK06305 DNA polymerase III su 99.6 8.3E-14 1.8E-18 154.8 20.4 207 323-572 8-243 (451)
116 PRK10787 DNA-binding ATP-depen 99.6 2.6E-14 5.6E-19 167.9 16.9 219 332-573 322-580 (784)
117 KOG0989 Replication factor C, 99.6 1.6E-14 3.5E-19 149.7 12.9 195 322-553 26-236 (346)
118 PRK00440 rfc replication facto 99.6 1E-13 2.2E-18 145.6 19.2 205 324-573 9-224 (319)
119 KOG2004 Mitochondrial ATP-depe 99.6 2.1E-14 4.5E-19 161.3 14.6 165 332-517 411-597 (906)
120 COG0593 DnaA ATPase involved i 99.6 1.5E-13 3.2E-18 149.5 20.9 229 325-580 80-318 (408)
121 PRK06620 hypothetical protein; 99.6 6.1E-14 1.3E-18 141.4 16.4 199 326-572 10-213 (214)
122 COG1224 TIP49 DNA helicase TIP 99.6 1.2E-13 2.7E-18 145.5 19.0 98 473-574 322-431 (450)
123 PRK07940 DNA polymerase III su 99.6 4.3E-14 9.3E-19 154.4 16.1 188 330-545 3-212 (394)
124 PRK05342 clpX ATP-dependent pr 99.6 8.7E-14 1.9E-18 152.8 17.8 221 331-555 69-378 (412)
125 PRK14954 DNA polymerase III su 99.5 1.4E-13 3.1E-18 157.7 18.9 216 324-572 8-254 (620)
126 PRK14948 DNA polymerase III su 99.5 2E-13 4.4E-18 156.8 20.3 209 324-570 8-240 (620)
127 PRK14950 DNA polymerase III su 99.5 3.1E-13 6.7E-18 154.8 20.2 213 323-572 7-242 (585)
128 PRK13407 bchI magnesium chelat 99.5 5.4E-14 1.2E-18 150.5 13.1 220 327-576 3-307 (334)
129 PF05673 DUF815: Protein of un 99.5 3.3E-13 7.2E-18 137.5 17.6 195 325-550 20-244 (249)
130 TIGR02640 gas_vesic_GvpN gas v 99.5 5.2E-13 1.1E-17 138.4 18.5 184 366-577 22-259 (262)
131 TIGR02903 spore_lon_C ATP-depe 99.5 6E-13 1.3E-17 153.1 20.9 217 326-575 148-430 (615)
132 COG2812 DnaX DNA polymerase II 99.5 2.8E-13 6.1E-18 151.2 17.0 198 325-555 9-228 (515)
133 COG1474 CDC6 Cdc6-related prot 99.5 2.1E-12 4.5E-17 140.0 21.8 221 331-577 16-267 (366)
134 PRK05201 hslU ATP-dependent pr 99.5 5.2E-13 1.1E-17 145.5 16.5 175 333-512 16-344 (443)
135 TIGR00382 clpX endopeptidase C 99.5 5E-13 1.1E-17 146.5 16.3 219 334-556 79-385 (413)
136 TIGR00390 hslU ATP-dependent p 99.5 4.8E-13 1E-17 145.7 15.8 175 333-512 13-342 (441)
137 PRK09087 hypothetical protein; 99.5 3.5E-13 7.6E-18 137.0 13.9 173 366-575 45-222 (226)
138 CHL00081 chlI Mg-protoporyphyr 99.5 2.9E-13 6.3E-18 145.4 13.6 222 327-577 12-324 (350)
139 TIGR02030 BchI-ChlI magnesium 99.5 5.8E-13 1.3E-17 142.8 15.1 216 330-577 2-311 (337)
140 PRK14971 DNA polymerase III su 99.5 1.6E-12 3.5E-17 149.3 19.5 211 325-572 10-243 (614)
141 PRK11034 clpA ATP-dependent Cl 99.5 1.5E-12 3.3E-17 152.3 18.7 165 333-517 459-667 (758)
142 TIGR02639 ClpA ATP-dependent C 99.4 1.8E-12 4E-17 152.1 18.0 199 332-552 454-708 (731)
143 COG0542 clpA ATP-binding subun 99.4 6E-12 1.3E-16 145.6 20.4 282 326-640 164-494 (786)
144 TIGR02442 Cob-chelat-sub cobal 99.4 2.4E-12 5.1E-17 148.8 15.4 215 330-577 2-306 (633)
145 cd00009 AAA The AAA+ (ATPases 99.4 6E-12 1.3E-16 114.1 13.5 121 364-501 18-150 (151)
146 PF06068 TIP49: TIP49 C-termin 99.3 2E-11 4.4E-16 130.6 15.8 67 330-403 22-90 (398)
147 TIGR02329 propionate_PrpR prop 99.3 5.8E-12 1.3E-16 142.4 11.8 211 329-571 209-466 (526)
148 TIGR00368 Mg chelatase-related 99.3 4E-11 8.6E-16 134.8 18.3 212 328-573 188-497 (499)
149 PRK15424 propionate catabolism 99.3 6.2E-12 1.3E-16 142.3 11.7 210 329-569 216-479 (538)
150 KOG1942 DNA helicase, TBP-inte 99.3 4.3E-11 9.2E-16 123.6 16.6 101 471-575 325-438 (456)
151 TIGR01650 PD_CobS cobaltochela 99.3 1.4E-11 3E-16 131.1 12.5 137 365-516 64-233 (327)
152 COG3829 RocR Transcriptional r 99.3 1.2E-11 2.6E-16 137.0 12.2 215 327-575 240-498 (560)
153 COG0714 MoxR-like ATPases [Gen 99.3 5.2E-11 1.1E-15 127.2 16.7 132 366-514 44-200 (329)
154 TIGR03345 VI_ClpV1 type VI sec 99.3 6.5E-11 1.4E-15 140.8 18.8 196 332-552 566-827 (852)
155 PF05621 TniB: Bacterial TniB 99.3 1.7E-10 3.8E-15 121.0 19.3 219 332-570 34-284 (302)
156 TIGR00764 lon_rel lon-related 99.3 6.6E-11 1.4E-15 136.1 17.2 105 470-577 267-393 (608)
157 smart00350 MCM minichromosome 99.3 5E-11 1.1E-15 134.7 15.7 222 333-575 204-504 (509)
158 TIGR01817 nifA Nif-specific re 99.3 9.5E-12 2.1E-16 141.2 9.7 210 326-570 190-440 (534)
159 PRK13531 regulatory ATPase Rav 99.3 1.7E-10 3.6E-15 128.2 19.0 213 333-577 21-285 (498)
160 TIGR03346 chaperone_ClpB ATP-d 99.3 9.6E-11 2.1E-15 139.8 18.3 202 332-554 565-824 (852)
161 PRK09112 DNA polymerase III su 99.3 9.2E-11 2E-15 126.7 16.3 189 327-550 18-243 (351)
162 COG2607 Predicted ATPase (AAA+ 99.3 2.3E-10 4.9E-15 115.8 17.6 195 325-550 53-276 (287)
163 PRK10865 protein disaggregatio 99.3 1.8E-10 3.8E-15 137.4 19.7 166 331-518 567-781 (857)
164 PRK05022 anaerobic nitric oxid 99.3 3.7E-11 8.1E-16 135.7 13.4 208 330-569 185-437 (509)
165 CHL00095 clpC Clp protease ATP 99.3 1.4E-10 3E-15 137.9 18.6 166 332-518 509-734 (821)
166 PRK10820 DNA-binding transcrip 99.2 4.6E-11 9.9E-16 135.3 13.1 207 327-568 199-447 (520)
167 PRK07471 DNA polymerase III su 99.2 2.5E-10 5.4E-15 124.0 17.8 186 327-549 14-240 (365)
168 PRK11388 DNA-binding transcrip 99.2 3.5E-11 7.7E-16 139.3 11.8 211 328-573 321-569 (638)
169 PRK11608 pspF phage shock prot 99.2 5.3E-11 1.1E-15 127.3 12.3 194 330-555 4-240 (326)
170 TIGR03015 pepcterm_ATPase puta 99.2 2.8E-10 6E-15 117.0 16.6 192 366-575 44-266 (269)
171 smart00382 AAA ATPases associa 99.2 3.3E-11 7.2E-16 107.7 8.4 126 365-503 2-147 (148)
172 TIGR02974 phageshock_pspF psp 99.2 6.2E-11 1.3E-15 127.0 11.7 190 334-555 1-233 (329)
173 PF01078 Mg_chelatase: Magnesi 99.2 1.2E-11 2.6E-16 123.6 5.5 119 330-480 1-158 (206)
174 PHA02244 ATPase-like protein 99.2 4.6E-10 9.9E-15 121.1 18.0 148 329-505 94-263 (383)
175 COG0542 clpA ATP-binding subun 99.2 9.9E-11 2.1E-15 135.6 13.6 161 332-518 491-707 (786)
176 PRK09862 putative ATP-dependen 99.2 2.7E-10 5.9E-15 127.9 16.0 210 329-573 188-490 (506)
177 COG1221 PspF Transcriptional r 99.2 5.8E-11 1.3E-15 129.2 10.2 200 327-556 73-310 (403)
178 COG0606 Predicted ATPase with 99.2 3.1E-11 6.6E-16 132.3 7.6 212 328-573 175-483 (490)
179 PRK05564 DNA polymerase III su 99.2 2.9E-10 6.4E-15 120.6 14.7 170 329-538 1-182 (313)
180 PRK15429 formate hydrogenlyase 99.2 2.6E-10 5.7E-15 133.2 15.2 195 329-555 373-609 (686)
181 TIGR00602 rad24 checkpoint pro 99.1 5.2E-10 1.1E-14 128.7 15.5 208 323-555 75-328 (637)
182 COG3604 FhlA Transcriptional r 99.1 8.8E-11 1.9E-15 128.8 8.6 197 327-555 218-456 (550)
183 COG2204 AtoC Response regulato 99.1 3.3E-10 7.1E-15 125.3 12.9 206 329-569 138-385 (464)
184 TIGR00678 holB DNA polymerase 99.1 5.2E-10 1.1E-14 109.8 13.0 144 363-538 12-183 (188)
185 TIGR02031 BchD-ChlD magnesium 99.1 7E-10 1.5E-14 127.4 16.0 189 366-577 17-260 (589)
186 PRK07399 DNA polymerase III su 99.1 6.1E-10 1.3E-14 118.7 13.4 184 330-550 2-224 (314)
187 PRK11331 5-methylcytosine-spec 99.1 8.1E-10 1.7E-14 121.9 14.3 155 331-502 174-357 (459)
188 PRK04132 replication factor C 99.1 1.1E-09 2.3E-14 129.2 15.8 171 367-570 566-749 (846)
189 PF07728 AAA_5: AAA domain (dy 99.1 1.3E-10 2.8E-15 108.1 6.0 113 367-494 1-139 (139)
190 KOG1969 DNA replication checkp 99.1 4.9E-09 1.1E-13 119.1 19.2 204 324-558 263-518 (877)
191 COG0470 HolB ATPase involved i 99.1 2.3E-09 4.9E-14 112.7 15.6 145 333-509 2-174 (325)
192 TIGR02915 PEP_resp_reg putativ 99.0 6.7E-10 1.4E-14 122.7 10.1 205 330-569 137-383 (445)
193 KOG2680 DNA helicase TIP49, TB 99.0 7.6E-09 1.7E-13 107.5 16.8 100 473-576 319-430 (454)
194 PRK08058 DNA polymerase III su 99.0 3.1E-09 6.7E-14 113.9 13.7 149 330-514 3-180 (329)
195 COG1239 ChlI Mg-chelatase subu 99.0 9.3E-09 2E-13 111.6 16.6 253 328-638 13-327 (423)
196 COG1219 ClpX ATP-dependent pro 99.0 1.2E-09 2.7E-14 114.2 9.1 126 334-466 63-203 (408)
197 PF00158 Sigma54_activat: Sigm 99.0 6.9E-10 1.5E-14 108.1 6.9 131 334-495 1-155 (168)
198 KOG0741 AAA+-type ATPase [Post 99.0 2.7E-09 6E-14 117.4 11.9 154 347-513 526-683 (744)
199 COG1220 HslU ATP-dependent pro 99.0 6.9E-09 1.5E-13 109.4 13.8 83 426-513 252-346 (444)
200 KOG0991 Replication factor C, 98.9 3.2E-09 7E-14 107.1 9.7 187 323-552 18-216 (333)
201 PRK11361 acetoacetate metaboli 98.9 2.9E-09 6.3E-14 117.9 10.4 208 330-572 141-390 (457)
202 PRK05707 DNA polymerase III su 98.9 6.7E-09 1.5E-13 111.4 12.7 154 362-544 19-200 (328)
203 smart00763 AAA_PrkA PrkA AAA d 98.9 1.6E-08 3.5E-13 109.0 15.5 82 331-419 49-143 (361)
204 PRK10923 glnG nitrogen regulat 98.9 6.3E-09 1.4E-13 115.9 12.8 208 330-572 136-385 (469)
205 PF07724 AAA_2: AAA domain (Cd 98.9 1.4E-09 3.1E-14 106.1 6.6 111 366-482 4-131 (171)
206 PTZ00111 DNA replication licen 98.9 1.4E-08 2.9E-13 119.7 15.2 157 333-511 451-652 (915)
207 PRK08116 hypothetical protein; 98.9 1.1E-08 2.5E-13 106.6 11.8 124 364-505 113-251 (268)
208 KOG1514 Origin recognition com 98.9 5.7E-08 1.2E-12 110.4 17.3 222 333-578 397-658 (767)
209 PRK13765 ATP-dependent proteas 98.9 1.5E-08 3.2E-13 117.0 12.5 101 471-574 277-399 (637)
210 PRK15115 response regulator Gl 98.8 1.1E-08 2.4E-13 113.1 10.6 205 333-572 135-381 (444)
211 TIGR01818 ntrC nitrogen regula 98.8 1.5E-08 3.2E-13 112.6 10.1 206 332-572 134-381 (463)
212 PF13177 DNA_pol3_delta2: DNA 98.8 1.8E-08 3.9E-13 97.4 8.4 133 336-502 1-160 (162)
213 KOG0990 Replication factor C, 98.8 4.6E-08 1E-12 102.7 12.0 194 323-555 32-237 (360)
214 PRK07952 DNA replication prote 98.8 1E-07 2.2E-12 98.3 13.7 132 327-481 67-205 (244)
215 PRK13406 bchD magnesium chelat 98.8 4.4E-08 9.5E-13 112.3 12.0 191 366-577 26-252 (584)
216 KOG2227 Pre-initiation complex 98.8 2.8E-07 6E-12 101.0 17.5 224 333-578 151-418 (529)
217 PRK06964 DNA polymerase III su 98.7 4.9E-08 1.1E-12 105.2 11.1 134 362-515 18-203 (342)
218 PF01637 Arch_ATPase: Archaeal 98.7 7.1E-08 1.5E-12 95.5 11.3 184 335-545 2-232 (234)
219 PF07726 AAA_3: ATPase family 98.7 3.8E-09 8.3E-14 98.3 1.9 110 367-495 1-130 (131)
220 PRK10365 transcriptional regul 98.7 3.1E-08 6.8E-13 109.1 9.4 205 333-572 140-386 (441)
221 PRK06871 DNA polymerase III su 98.7 2E-07 4.4E-12 99.8 15.0 134 362-515 21-178 (325)
222 PF14532 Sigma54_activ_2: Sigm 98.7 6E-09 1.3E-13 97.5 2.6 82 335-440 1-85 (138)
223 PRK12377 putative replication 98.7 1.1E-07 2.4E-12 98.3 12.1 70 365-436 101-175 (248)
224 PRK08939 primosomal protein Dn 98.7 1.6E-07 3.5E-12 99.8 12.3 132 329-481 124-261 (306)
225 KOG0745 Putative ATP-dependent 98.7 8.9E-08 1.9E-12 103.8 9.8 97 366-465 227-331 (564)
226 PRK07993 DNA polymerase III su 98.6 2.8E-07 6.1E-12 99.2 13.5 133 362-514 21-178 (334)
227 PF01434 Peptidase_M41: Peptid 98.6 3.1E-08 6.7E-13 100.0 5.6 59 564-626 1-59 (213)
228 PRK08769 DNA polymerase III su 98.6 4.6E-07 9.9E-12 96.9 13.5 133 362-514 23-183 (319)
229 PRK08181 transposase; Validate 98.6 3.3E-07 7.1E-12 95.9 12.0 100 365-481 106-209 (269)
230 PF03215 Rad17: Rad17 cell cyc 98.6 1.6E-06 3.4E-11 98.4 16.9 208 324-556 11-269 (519)
231 PRK06526 transposase; Provisio 98.5 2.5E-07 5.5E-12 95.9 9.3 100 365-481 98-201 (254)
232 COG3283 TyrR Transcriptional r 98.5 6.2E-07 1.3E-11 95.5 12.2 200 327-556 199-433 (511)
233 KOG2035 Replication factor C, 98.5 9.9E-07 2.1E-11 91.3 13.2 174 327-538 8-220 (351)
234 PF13173 AAA_14: AAA domain 98.5 5.3E-07 1.1E-11 83.3 9.9 69 366-436 3-73 (128)
235 PRK06835 DNA replication prote 98.5 7.1E-07 1.5E-11 95.9 12.0 69 366-436 184-258 (329)
236 PRK06090 DNA polymerase III su 98.5 9.6E-07 2.1E-11 94.4 12.5 130 362-514 22-178 (319)
237 COG1484 DnaC DNA replication p 98.5 4.3E-07 9.4E-12 94.2 9.0 72 364-436 104-179 (254)
238 KOG1051 Chaperone HSP104 and r 98.5 1E-06 2.2E-11 104.1 12.7 126 333-480 563-710 (898)
239 PRK09183 transposase/IS protei 98.5 3.3E-07 7.2E-12 95.2 7.6 72 364-436 101-176 (259)
240 PF13401 AAA_22: AAA domain; P 98.5 7E-07 1.5E-11 81.4 8.8 98 365-478 4-125 (131)
241 PF01695 IstB_IS21: IstB-like 98.4 2E-07 4.3E-12 91.7 5.2 70 364-435 46-119 (178)
242 PRK08699 DNA polymerase III su 98.4 1.3E-06 2.8E-11 93.8 10.9 132 362-514 18-183 (325)
243 PF12775 AAA_7: P-loop contain 98.4 3E-06 6.6E-11 88.7 13.3 138 365-517 33-194 (272)
244 PRK06921 hypothetical protein; 98.4 2.9E-06 6.2E-11 88.7 12.9 69 364-435 116-188 (266)
245 KOG0478 DNA replication licens 98.3 5.9E-06 1.3E-10 94.0 13.4 198 364-573 461-722 (804)
246 PF05729 NACHT: NACHT domain 98.3 7.5E-06 1.6E-10 76.9 11.9 141 367-517 2-164 (166)
247 COG3284 AcoR Transcriptional a 98.3 7.7E-07 1.7E-11 100.8 6.0 205 335-574 316-556 (606)
248 cd01120 RecA-like_NTPases RecA 98.3 5.6E-06 1.2E-10 77.1 10.3 109 368-481 2-137 (165)
249 KOG0480 DNA replication licens 98.3 4E-06 8.6E-11 94.7 10.5 223 330-575 343-643 (764)
250 COG1241 MCM2 Predicted ATPase 98.3 2.5E-06 5.4E-11 98.7 9.2 222 332-576 286-593 (682)
251 KOG1970 Checkpoint RAD17-RFC c 98.2 3.7E-05 8E-10 86.1 17.6 211 324-555 74-320 (634)
252 PF03969 AFG1_ATPase: AFG1-lik 98.2 5.3E-06 1.2E-10 90.3 10.9 103 362-481 59-168 (362)
253 KOG0482 DNA replication licens 98.2 2.9E-06 6.2E-11 93.6 8.1 231 332-575 342-638 (721)
254 PLN03210 Resistant to P. syrin 98.2 1.7E-05 3.6E-10 98.3 15.8 179 327-540 179-389 (1153)
255 PF00493 MCM: MCM2/3/5 family 98.1 1.3E-06 2.8E-11 94.0 3.6 190 364-574 56-325 (331)
256 COG3267 ExeA Type II secretory 98.1 9.7E-05 2.1E-09 76.2 16.4 186 367-569 53-267 (269)
257 TIGR02237 recomb_radB DNA repa 98.1 1.5E-05 3.2E-10 79.4 9.2 115 361-479 8-148 (209)
258 PF00931 NB-ARC: NB-ARC domain 98.1 4.1E-05 8.9E-10 79.3 12.8 174 343-547 4-202 (287)
259 PF12774 AAA_6: Hydrolytic ATP 98.0 4.2E-05 9.1E-10 78.4 11.7 129 366-512 33-176 (231)
260 PRK05917 DNA polymerase III su 98.0 4E-05 8.7E-10 81.0 10.5 122 362-503 16-154 (290)
261 PRK05818 DNA polymerase III su 97.9 0.00034 7.3E-09 72.9 15.9 121 363-503 5-147 (261)
262 cd01124 KaiC KaiC is a circadi 97.9 0.00014 3E-09 70.5 11.5 32 368-399 2-36 (187)
263 TIGR01618 phage_P_loop phage n 97.9 3.4E-05 7.3E-10 78.6 7.3 73 364-438 11-95 (220)
264 KOG0481 DNA replication licens 97.8 0.00011 2.4E-09 81.6 11.6 230 333-574 332-638 (729)
265 KOG1968 Replication factor C, 97.8 1.6E-05 3.5E-10 94.6 5.1 206 326-554 314-535 (871)
266 TIGR02688 conserved hypothetic 97.8 0.00025 5.4E-09 78.3 13.4 108 339-480 194-314 (449)
267 COG1485 Predicted ATPase [Gene 97.8 6.5E-05 1.4E-09 80.6 8.0 102 362-481 62-171 (367)
268 PRK07132 DNA polymerase III su 97.8 0.00034 7.3E-09 74.5 13.4 127 363-514 16-160 (299)
269 PF00910 RNA_helicase: RNA hel 97.8 7.4E-05 1.6E-09 67.2 7.1 23 368-390 1-23 (107)
270 PRK00131 aroK shikimate kinase 97.7 0.00012 2.5E-09 69.9 8.6 41 363-405 2-42 (175)
271 PRK07276 DNA polymerase III su 97.7 0.00036 7.9E-09 73.9 12.9 155 362-548 21-198 (290)
272 PRK11823 DNA repair protein Ra 97.7 0.00019 4.1E-09 80.3 11.2 79 361-439 76-171 (446)
273 PRK09361 radB DNA repair and r 97.7 0.00019 4.1E-09 72.4 10.2 39 361-399 19-60 (225)
274 TIGR02012 tigrfam_recA protein 97.7 0.00016 3.4E-09 77.6 10.0 119 361-479 51-190 (321)
275 cd01121 Sms Sms (bacterial rad 97.7 0.00024 5.1E-09 77.9 11.0 79 361-439 78-173 (372)
276 PRK06067 flagellar accessory p 97.6 0.00036 7.8E-09 70.9 11.1 39 361-399 21-62 (234)
277 PF13207 AAA_17: AAA domain; P 97.6 4.2E-05 9.2E-10 69.0 3.6 30 368-397 2-31 (121)
278 COG1373 Predicted ATPase (AAA+ 97.6 0.00085 1.8E-08 74.1 14.3 135 367-522 39-186 (398)
279 KOG1051 Chaperone HSP104 and r 97.6 0.00041 8.8E-09 82.6 12.3 177 366-556 209-411 (898)
280 PRK08533 flagellar accessory p 97.6 0.00044 9.4E-09 70.8 10.8 77 361-437 20-130 (230)
281 cd01394 radB RadB. The archaea 97.6 0.00052 1.1E-08 68.8 11.2 39 361-399 15-56 (218)
282 cd00983 recA RecA is a bacter 97.6 0.00027 5.9E-09 75.9 9.5 119 361-479 51-190 (325)
283 PRK13949 shikimate kinase; Pro 97.6 0.00067 1.5E-08 66.1 11.4 31 367-397 3-33 (169)
284 KOG0477 DNA replication licens 97.6 0.00033 7.2E-09 79.4 10.1 228 333-576 450-758 (854)
285 COG1618 Predicted nucleotide k 97.6 0.00042 9.1E-09 67.2 9.4 26 364-389 4-29 (179)
286 PRK08118 topology modulation p 97.6 0.00012 2.6E-09 71.2 5.8 32 367-398 3-34 (167)
287 PF05707 Zot: Zonular occluden 97.5 0.00012 2.6E-09 72.6 5.6 123 368-503 3-146 (193)
288 PHA00729 NTP-binding motif con 97.5 0.00013 2.9E-09 74.4 6.0 25 366-390 18-42 (226)
289 PRK00771 signal recognition pa 97.5 0.0011 2.3E-08 74.1 13.5 194 363-575 93-332 (437)
290 PF13671 AAA_33: AAA domain; P 97.5 0.0003 6.5E-09 65.1 7.7 37 368-406 2-38 (143)
291 PF06480 FtsH_ext: FtsH Extrac 97.5 2.7E-05 5.8E-10 68.8 0.6 30 179-208 26-55 (110)
292 PF14516 AAA_35: AAA-like doma 97.5 0.005 1.1E-07 66.4 18.1 165 365-540 31-233 (331)
293 TIGR02858 spore_III_AA stage I 97.5 0.00031 6.6E-09 73.8 8.5 68 366-433 112-203 (270)
294 cd00046 DEXDc DEAD-like helica 97.5 0.00086 1.9E-08 59.7 9.8 24 366-389 1-24 (144)
295 PRK07261 topology modulation p 97.5 0.00019 4.1E-09 70.0 5.8 31 368-398 3-33 (171)
296 PRK06762 hypothetical protein; 97.4 0.00053 1.1E-08 65.7 8.6 40 365-404 2-41 (166)
297 COG4650 RtcR Sigma54-dependent 97.4 0.00046 9.9E-09 72.4 8.3 190 362-576 205-444 (531)
298 PF07693 KAP_NTPase: KAP famil 97.4 0.0032 7E-08 66.6 15.0 78 424-518 172-265 (325)
299 PRK12723 flagellar biosynthesi 97.4 0.0011 2.4E-08 73.0 11.7 132 363-510 172-329 (388)
300 PRK15455 PrkA family serine pr 97.4 0.00019 4.1E-09 81.9 5.4 63 330-398 74-137 (644)
301 cd01128 rho_factor Transcripti 97.4 0.0018 3.9E-08 67.2 12.2 27 365-391 16-42 (249)
302 cd03283 ABC_MutS-like MutS-lik 97.4 0.00073 1.6E-08 67.6 9.0 67 366-433 26-114 (199)
303 PRK10536 hypothetical protein; 97.4 0.0011 2.4E-08 69.0 10.3 45 330-388 53-97 (262)
304 PRK09376 rho transcription ter 97.4 0.00077 1.7E-08 74.0 9.5 73 368-440 172-272 (416)
305 PRK14722 flhF flagellar biosyn 97.4 0.00043 9.2E-09 75.8 7.6 111 363-489 135-267 (374)
306 PF06745 KaiC: KaiC; InterPro 97.3 0.0011 2.5E-08 66.8 10.0 97 361-464 15-148 (226)
307 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.00077 1.7E-08 68.1 8.7 116 361-478 15-167 (235)
308 cd01393 recA_like RecA is a b 97.3 0.00054 1.2E-08 68.8 7.5 116 361-478 15-166 (226)
309 KOG2170 ATPase of the AAA+ sup 97.3 0.0054 1.2E-07 64.9 14.8 96 333-437 83-191 (344)
310 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.0023 5.1E-08 65.4 11.9 39 361-399 17-58 (237)
311 PF06309 Torsin: Torsin; Inte 97.3 0.00099 2.1E-08 62.2 8.1 52 332-389 25-77 (127)
312 COG5271 MDN1 AAA ATPase contai 97.3 0.0012 2.6E-08 81.2 10.6 136 365-516 1543-1703(4600)
313 cd00464 SK Shikimate kinase (S 97.3 0.00048 1E-08 64.6 6.0 39 367-407 1-39 (154)
314 PTZ00202 tuzin; Provisional 97.3 0.017 3.6E-07 64.5 18.6 62 329-399 259-320 (550)
315 PF00437 T2SE: Type II/IV secr 97.3 0.00031 6.7E-09 72.9 4.9 99 326-434 98-207 (270)
316 KOG2228 Origin recognition com 97.2 0.0013 2.8E-08 70.4 9.5 160 333-516 25-219 (408)
317 PF13191 AAA_16: AAA ATPase do 97.2 0.00017 3.7E-09 69.3 2.7 59 334-401 2-63 (185)
318 TIGR00416 sms DNA repair prote 97.2 0.0017 3.6E-08 73.0 11.0 78 361-438 90-184 (454)
319 KOG2543 Origin recognition com 97.2 0.0053 1.1E-07 66.7 14.1 159 333-515 7-192 (438)
320 PF13604 AAA_30: AAA domain; P 97.2 0.0015 3.3E-08 65.1 9.4 98 366-480 19-132 (196)
321 PRK13947 shikimate kinase; Pro 97.2 0.0003 6.5E-09 67.6 4.2 31 367-397 3-33 (171)
322 KOG2383 Predicted ATPase [Gene 97.2 0.0024 5.2E-08 69.7 11.0 28 362-389 111-138 (467)
323 cd01131 PilT Pilus retraction 97.2 0.00048 1E-08 68.7 5.5 67 367-433 3-83 (198)
324 COG0703 AroK Shikimate kinase 97.2 0.00095 2.1E-08 65.5 7.3 40 366-407 3-42 (172)
325 PRK05973 replicative DNA helic 97.2 0.0025 5.4E-08 65.8 10.7 39 361-399 60-101 (237)
326 PRK14974 cell division protein 97.2 0.0019 4.2E-08 69.8 10.1 73 364-436 139-234 (336)
327 TIGR01420 pilT_fam pilus retra 97.2 0.00093 2E-08 72.3 7.6 70 365-434 122-205 (343)
328 PRK03839 putative kinase; Prov 97.2 0.00034 7.3E-09 68.1 3.8 31 367-397 2-32 (180)
329 cd01122 GP4d_helicase GP4d_hel 97.2 0.0019 4.2E-08 66.8 9.6 38 361-398 26-67 (271)
330 PRK04841 transcriptional regul 97.1 0.0047 1E-07 74.3 14.2 151 366-540 33-219 (903)
331 PRK12339 2-phosphoglycerate ki 97.1 0.007 1.5E-07 60.7 13.2 30 365-394 3-32 (197)
332 cd03216 ABC_Carb_Monos_I This 97.1 0.00076 1.6E-08 65.0 6.1 105 362-481 23-142 (163)
333 PRK04296 thymidine kinase; Pro 97.1 0.0018 4E-08 64.1 8.9 70 367-436 4-90 (190)
334 PRK09354 recA recombinase A; P 97.1 0.0017 3.8E-08 70.4 9.3 78 361-438 56-152 (349)
335 PRK13948 shikimate kinase; Pro 97.1 0.001 2.2E-08 65.9 6.9 44 363-408 8-51 (182)
336 PRK13946 shikimate kinase; Pro 97.1 0.0013 2.8E-08 64.7 7.4 35 364-398 9-43 (184)
337 TIGR03574 selen_PSTK L-seryl-t 97.1 0.0024 5.2E-08 65.7 9.7 36 368-403 2-40 (249)
338 PRK00625 shikimate kinase; Pro 97.1 0.00047 1E-08 67.7 4.1 31 367-397 2-32 (173)
339 cd01130 VirB11-like_ATPase Typ 97.1 0.00059 1.3E-08 67.2 4.9 70 364-433 24-109 (186)
340 cd00227 CPT Chloramphenicol (C 97.1 0.00052 1.1E-08 66.7 4.4 39 366-404 3-41 (175)
341 PF10236 DAP3: Mitochondrial r 97.1 0.031 6.8E-07 59.8 18.3 132 414-546 143-308 (309)
342 COG3854 SpoIIIAA ncharacterize 97.1 0.0033 7.1E-08 64.4 10.1 70 366-435 138-229 (308)
343 PLN02674 adenylate kinase 97.1 0.0033 7E-08 65.2 10.1 40 363-404 29-68 (244)
344 PRK08154 anaerobic benzoate ca 97.1 0.002 4.4E-08 68.7 8.9 35 362-396 130-164 (309)
345 PRK05800 cobU adenosylcobinami 97.0 0.0041 8.9E-08 60.8 10.2 95 367-465 3-114 (170)
346 PF00448 SRP54: SRP54-type pro 97.0 0.0016 3.5E-08 65.1 7.5 131 365-509 1-156 (196)
347 KOG3347 Predicted nucleotide k 97.0 0.0014 3E-08 62.9 6.5 32 366-397 8-39 (176)
348 COG4178 ABC-type uncharacteriz 97.0 0.0014 3E-08 75.4 7.7 28 361-388 415-442 (604)
349 COG1116 TauB ABC-type nitrate/ 97.0 0.0029 6.3E-08 65.3 9.3 25 364-388 28-52 (248)
350 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.00057 1.2E-08 66.4 3.9 34 368-403 2-35 (183)
351 PRK10867 signal recognition pa 97.0 0.0096 2.1E-07 66.6 14.0 74 362-435 97-194 (433)
352 TIGR02782 TrbB_P P-type conjug 97.0 0.00055 1.2E-08 72.8 4.0 70 365-434 132-214 (299)
353 TIGR03880 KaiC_arch_3 KaiC dom 97.0 0.0076 1.6E-07 60.8 12.0 39 361-399 12-53 (224)
354 cd00984 DnaB_C DnaB helicase C 97.0 0.0025 5.5E-08 64.6 8.6 38 361-398 9-50 (242)
355 PRK14532 adenylate kinase; Pro 97.0 0.00062 1.3E-08 66.6 4.0 36 367-404 2-37 (188)
356 cd03281 ABC_MSH5_euk MutS5 hom 97.0 0.0038 8.2E-08 63.2 9.8 23 365-387 29-51 (213)
357 PF05272 VirE: Virulence-assoc 97.0 0.0048 1E-07 61.9 10.2 125 341-502 34-169 (198)
358 cd02020 CMPK Cytidine monophos 97.0 0.00067 1.4E-08 62.9 3.8 30 368-397 2-31 (147)
359 PRK14531 adenylate kinase; Pro 97.0 0.00079 1.7E-08 66.0 4.4 35 366-402 3-37 (183)
360 PRK06217 hypothetical protein; 96.9 0.00077 1.7E-08 66.1 4.1 31 367-397 3-33 (183)
361 PLN02200 adenylate kinase fami 96.9 0.00099 2.1E-08 68.4 4.9 42 361-404 39-80 (234)
362 PF03266 NTPase_1: NTPase; In 96.9 0.001 2.2E-08 65.0 4.7 23 367-389 1-23 (168)
363 TIGR03881 KaiC_arch_4 KaiC dom 96.9 0.0087 1.9E-07 60.4 11.5 38 361-398 16-56 (229)
364 cd01428 ADK Adenylate kinase ( 96.9 0.00082 1.8E-08 65.6 3.9 34 368-403 2-35 (194)
365 PF04665 Pox_A32: Poxvirus A32 96.9 0.013 2.9E-07 60.6 12.8 133 363-515 11-169 (241)
366 PRK13900 type IV secretion sys 96.9 0.0011 2.4E-08 71.5 5.2 71 364-434 159-245 (332)
367 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0024 5.2E-08 66.7 7.5 93 329-434 57-159 (264)
368 cd02021 GntK Gluconate kinase 96.9 0.00088 1.9E-08 63.0 3.8 28 368-395 2-29 (150)
369 TIGR03878 thermo_KaiC_2 KaiC d 96.9 0.0077 1.7E-07 62.7 11.0 38 361-398 32-72 (259)
370 COG0563 Adk Adenylate kinase a 96.9 0.0017 3.7E-08 64.1 5.8 35 367-403 2-36 (178)
371 KOG0732 AAA+-type ATPase conta 96.9 0.0029 6.3E-08 76.2 8.8 75 367-441 594-670 (1080)
372 PRK13764 ATPase; Provisional 96.9 0.0015 3.2E-08 75.6 6.1 69 365-434 257-334 (602)
373 cd03238 ABC_UvrA The excision 96.9 0.0074 1.6E-07 59.4 10.2 119 362-502 18-163 (176)
374 PTZ00088 adenylate kinase 1; P 96.9 0.0011 2.5E-08 67.8 4.7 34 364-397 5-38 (229)
375 cd00544 CobU Adenosylcobinamid 96.9 0.0072 1.6E-07 59.1 10.0 95 368-464 2-113 (169)
376 PHA02624 large T antigen; Prov 96.8 0.0028 6.1E-08 72.8 8.1 205 361-624 427-644 (647)
377 TIGR02788 VirB11 P-type DNA tr 96.8 0.0015 3.3E-08 69.6 5.6 74 361-434 140-228 (308)
378 PRK04328 hypothetical protein; 96.8 0.012 2.6E-07 60.9 12.0 38 361-398 19-59 (249)
379 PRK14530 adenylate kinase; Pro 96.8 0.0011 2.4E-08 66.6 4.4 35 367-403 5-39 (215)
380 PRK06696 uridine kinase; Valid 96.8 0.0017 3.8E-08 65.7 5.8 40 363-402 20-62 (223)
381 TIGR01313 therm_gnt_kin carboh 96.8 0.00095 2.1E-08 63.7 3.7 28 368-395 1-28 (163)
382 PRK04040 adenylate kinase; Pro 96.8 0.0088 1.9E-07 59.4 10.6 31 365-395 2-34 (188)
383 TIGR02655 circ_KaiC circadian 96.8 0.0089 1.9E-07 67.7 12.0 78 361-438 259-367 (484)
384 PRK09519 recA DNA recombinatio 96.8 0.0042 9.1E-08 73.7 9.6 118 361-478 56-194 (790)
385 PRK11889 flhF flagellar biosyn 96.8 0.008 1.7E-07 66.3 11.0 72 364-435 240-331 (436)
386 PRK06547 hypothetical protein; 96.8 0.0013 2.8E-08 64.5 4.5 35 363-397 13-47 (172)
387 PRK13851 type IV secretion sys 96.8 0.0014 3E-08 71.2 5.0 73 362-434 159-246 (344)
388 cd02027 APSK Adenosine 5'-phos 96.8 0.0046 9.9E-08 58.9 8.1 36 368-403 2-40 (149)
389 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.8 0.0059 1.3E-07 57.7 8.7 71 362-434 23-98 (144)
390 PRK00279 adk adenylate kinase; 96.8 0.003 6.5E-08 63.5 7.0 29 368-396 3-31 (215)
391 COG5271 MDN1 AAA ATPase contai 96.8 0.0087 1.9E-07 74.2 11.6 135 366-516 889-1047(4600)
392 PHA02530 pseT polynucleotide k 96.8 0.0039 8.5E-08 65.4 8.0 39 365-404 2-40 (300)
393 PRK05057 aroK shikimate kinase 96.8 0.0014 3.1E-08 63.9 4.4 34 365-398 4-37 (172)
394 TIGR02525 plasmid_TraJ plasmid 96.8 0.0028 6E-08 69.5 7.0 68 367-434 151-235 (372)
395 PRK03731 aroL shikimate kinase 96.8 0.0014 3.1E-08 63.0 4.3 32 366-397 3-34 (171)
396 COG4088 Predicted nucleotide k 96.8 0.0029 6.3E-08 63.8 6.4 22 368-389 4-25 (261)
397 COG5245 DYN1 Dynein, heavy cha 96.7 0.014 3E-07 72.0 12.9 178 362-556 1491-1717(3164)
398 PF13521 AAA_28: AAA domain; P 96.7 0.0025 5.5E-08 61.0 5.8 35 368-403 2-36 (163)
399 cd03223 ABCD_peroxisomal_ALDP 96.7 0.0072 1.6E-07 58.4 9.0 73 362-434 24-119 (166)
400 PRK04301 radA DNA repair and r 96.7 0.0059 1.3E-07 65.3 9.1 117 361-479 98-251 (317)
401 PRK12724 flagellar biosynthesi 96.7 0.015 3.3E-07 64.6 12.5 36 364-399 222-261 (432)
402 TIGR02238 recomb_DMC1 meiotic 96.7 0.0059 1.3E-07 65.5 8.9 116 361-478 92-243 (313)
403 cd00267 ABC_ATPase ABC (ATP-bi 96.7 0.0042 9E-08 59.1 7.0 73 363-435 23-109 (157)
404 TIGR02236 recomb_radA DNA repa 96.7 0.008 1.7E-07 63.9 9.9 116 361-478 91-244 (310)
405 PF09848 DUF2075: Uncharacteri 96.7 0.0051 1.1E-07 66.6 8.6 23 367-389 3-25 (352)
406 PRK13894 conjugal transfer ATP 96.7 0.0018 3.9E-08 69.6 4.9 70 365-434 148-229 (319)
407 cd03246 ABCC_Protease_Secretio 96.7 0.0063 1.4E-07 59.0 8.2 27 363-389 26-52 (173)
408 COG4619 ABC-type uncharacteriz 96.7 0.014 3.1E-07 57.3 10.4 27 362-388 26-52 (223)
409 PF06414 Zeta_toxin: Zeta toxi 96.7 0.0048 1E-07 61.3 7.5 43 363-405 13-56 (199)
410 smart00487 DEXDc DEAD-like hel 96.7 0.018 4E-07 54.4 11.1 24 366-389 25-49 (201)
411 PRK13695 putative NTPase; Prov 96.6 0.013 2.8E-07 56.8 10.1 23 367-389 2-24 (174)
412 TIGR01526 nadR_NMN_Atrans nico 96.6 0.005 1.1E-07 66.3 7.8 70 366-436 163-243 (325)
413 PRK13808 adenylate kinase; Pro 96.6 0.011 2.3E-07 64.0 10.2 34 368-403 3-36 (333)
414 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0018 3.9E-08 62.8 4.0 34 367-402 5-38 (188)
415 cd03228 ABCC_MRP_Like The MRP 96.6 0.0054 1.2E-07 59.4 7.3 28 362-389 25-52 (171)
416 cd03243 ABC_MutS_homologs The 96.6 0.006 1.3E-07 60.8 7.7 22 366-387 30-51 (202)
417 PRK14528 adenylate kinase; Pro 96.6 0.0019 4.1E-08 63.8 4.1 30 367-396 3-32 (186)
418 PRK09302 circadian clock prote 96.6 0.024 5.3E-07 64.5 13.5 39 361-399 27-69 (509)
419 cd03247 ABCC_cytochrome_bd The 96.6 0.017 3.7E-07 56.2 10.7 28 362-389 25-52 (178)
420 cd03115 SRP The signal recogni 96.6 0.0085 1.8E-07 57.8 8.4 32 368-399 3-37 (173)
421 PRK10416 signal recognition pa 96.6 0.015 3.2E-07 62.6 11.0 36 363-398 112-150 (318)
422 COG1102 Cmk Cytidylate kinase 96.6 0.0017 3.7E-08 63.0 3.4 28 368-395 3-30 (179)
423 PRK14527 adenylate kinase; Pro 96.6 0.0019 4.1E-08 63.7 3.8 34 363-396 4-37 (191)
424 KOG0479 DNA replication licens 96.6 0.027 5.8E-07 64.1 13.1 157 333-500 302-481 (818)
425 smart00534 MUTSac ATPase domai 96.6 0.013 2.8E-07 57.8 9.7 20 368-387 2-21 (185)
426 TIGR03499 FlhF flagellar biosy 96.6 0.0064 1.4E-07 64.1 8.0 37 364-400 193-234 (282)
427 cd03280 ABC_MutS2 MutS2 homolo 96.6 0.011 2.3E-07 59.0 9.1 21 366-386 29-49 (200)
428 PRK05703 flhF flagellar biosyn 96.6 0.014 3E-07 65.2 11.0 36 365-400 221-261 (424)
429 PLN03187 meiotic recombination 96.6 0.0064 1.4E-07 66.0 8.1 116 361-478 122-273 (344)
430 TIGR00959 ffh signal recogniti 96.6 0.042 9.1E-07 61.5 14.7 73 363-435 97-193 (428)
431 TIGR01351 adk adenylate kinase 96.6 0.002 4.4E-08 64.5 3.9 34 368-403 2-35 (210)
432 PRK05541 adenylylsulfate kinas 96.6 0.0075 1.6E-07 58.5 7.8 41 363-403 5-48 (176)
433 COG2805 PilT Tfp pilus assembl 96.6 0.0061 1.3E-07 64.6 7.5 68 368-435 128-209 (353)
434 PF00406 ADK: Adenylate kinase 96.5 0.005 1.1E-07 58.2 6.3 35 370-406 1-35 (151)
435 PRK14730 coaE dephospho-CoA ki 96.5 0.016 3.6E-07 57.7 10.3 38 367-406 3-40 (195)
436 PRK13833 conjugal transfer pro 96.5 0.0036 7.8E-08 67.4 6.0 69 365-433 144-224 (323)
437 PRK08099 bifunctional DNA-bind 96.5 0.0063 1.4E-07 67.4 8.0 40 364-403 218-257 (399)
438 PRK02496 adk adenylate kinase; 96.5 0.0022 4.7E-08 62.6 3.9 30 367-396 3-32 (184)
439 TIGR02655 circ_KaiC circadian 96.5 0.02 4.3E-07 64.9 12.1 39 361-399 17-59 (484)
440 cd03222 ABC_RNaseL_inhibitor T 96.5 0.0083 1.8E-07 59.1 7.6 72 363-434 23-99 (177)
441 COG1936 Predicted nucleotide k 96.5 0.0043 9.3E-08 60.9 5.4 34 367-403 2-35 (180)
442 PTZ00035 Rad51 protein; Provis 96.4 0.011 2.5E-07 63.9 9.0 115 361-477 114-264 (337)
443 PF13238 AAA_18: AAA domain; P 96.4 0.0022 4.9E-08 57.7 3.0 22 368-389 1-22 (129)
444 PF01745 IPT: Isopentenyl tran 96.4 0.004 8.6E-08 63.2 4.9 132 368-517 4-140 (233)
445 PHA02774 E1; Provisional 96.4 0.0045 9.8E-08 70.8 5.9 34 365-398 434-468 (613)
446 cd02022 DPCK Dephospho-coenzym 96.4 0.016 3.6E-07 56.6 9.2 35 368-405 2-36 (179)
447 TIGR00064 ftsY signal recognit 96.4 0.027 5.9E-07 59.2 11.4 38 362-399 69-109 (272)
448 cd03230 ABC_DR_subfamily_A Thi 96.4 0.0097 2.1E-07 57.7 7.4 27 363-389 24-50 (173)
449 TIGR02533 type_II_gspE general 96.4 0.0078 1.7E-07 68.3 7.7 95 327-435 217-322 (486)
450 PLN03186 DNA repair protein RA 96.4 0.012 2.5E-07 64.0 8.7 117 361-479 119-271 (342)
451 COG2274 SunT ABC-type bacterio 96.4 0.011 2.4E-07 69.8 9.2 70 410-502 613-682 (709)
452 PRK14700 recombination factor 96.4 0.03 6.5E-07 59.5 11.4 106 469-579 6-119 (300)
453 PF13479 AAA_24: AAA domain 96.4 0.0054 1.2E-07 61.8 5.7 68 365-436 3-80 (213)
454 TIGR02239 recomb_RAD51 DNA rep 96.4 0.0076 1.7E-07 64.7 7.1 116 361-478 92-243 (316)
455 PF13481 AAA_25: AAA domain; P 96.4 0.0075 1.6E-07 58.8 6.5 74 366-439 33-156 (193)
456 KOG0058 Peptide exporter, ABC 96.4 0.014 3.1E-07 67.9 9.5 28 361-388 490-517 (716)
457 TIGR00152 dephospho-CoA kinase 96.3 0.026 5.6E-07 55.5 10.2 40 368-409 2-41 (188)
458 cd01125 repA Hexameric Replica 96.3 0.017 3.6E-07 59.1 9.2 21 368-388 4-24 (239)
459 PRK04182 cytidylate kinase; Pr 96.3 0.0034 7.4E-08 60.3 3.9 29 367-395 2-30 (180)
460 cd03213 ABCG_EPDR ABCG transpo 96.3 0.021 4.6E-07 56.5 9.6 28 362-389 32-59 (194)
461 cd03215 ABC_Carb_Monos_II This 96.3 0.014 3.1E-07 57.0 8.2 27 363-389 24-50 (182)
462 PRK01184 hypothetical protein; 96.3 0.0034 7.4E-08 61.2 3.8 29 367-396 3-31 (184)
463 TIGR01425 SRP54_euk signal rec 96.3 0.029 6.3E-07 62.6 11.4 196 363-575 98-339 (429)
464 COG2804 PulE Type II secretory 96.3 0.0079 1.7E-07 67.6 7.0 95 327-435 233-338 (500)
465 TIGR00767 rho transcription te 96.3 0.01 2.2E-07 65.5 7.7 26 365-390 168-193 (415)
466 cd03227 ABC_Class2 ABC-type Cl 96.3 0.013 2.9E-07 56.3 7.7 23 365-387 21-43 (162)
467 TIGR02173 cyt_kin_arch cytidyl 96.3 0.0038 8.1E-08 59.6 3.8 29 368-396 3-31 (171)
468 PF08423 Rad51: Rad51; InterP 96.3 0.0073 1.6E-07 62.9 6.1 116 368-485 41-192 (256)
469 PRK12337 2-phosphoglycerate ki 96.2 0.095 2.1E-06 59.0 15.0 31 363-393 253-283 (475)
470 PRK09302 circadian clock prote 96.2 0.04 8.6E-07 62.8 12.3 78 361-438 269-377 (509)
471 cd03214 ABC_Iron-Siderophores_ 96.2 0.017 3.8E-07 56.3 8.2 28 362-389 22-49 (180)
472 COG1121 ZnuC ABC-type Mn/Zn tr 96.2 0.022 4.9E-07 59.3 9.2 56 411-481 144-199 (254)
473 TIGR01069 mutS2 MutS2 family p 96.2 0.043 9.3E-07 65.7 12.8 23 366-388 323-345 (771)
474 cd03232 ABC_PDR_domain2 The pl 96.2 0.032 6.9E-07 55.1 9.9 26 363-388 31-56 (192)
475 PRK08233 hypothetical protein; 96.2 0.0052 1.1E-07 59.2 4.2 32 366-397 4-36 (182)
476 PRK00889 adenylylsulfate kinas 96.2 0.02 4.4E-07 55.4 8.4 39 364-402 3-44 (175)
477 PRK12338 hypothetical protein; 96.2 0.11 2.3E-06 56.1 14.5 31 364-394 3-33 (319)
478 PF13245 AAA_19: Part of AAA d 96.2 0.0069 1.5E-07 51.5 4.5 22 368-389 13-35 (76)
479 TIGR00150 HI0065_YjeE ATPase, 96.2 0.0076 1.7E-07 56.9 5.1 29 364-392 21-49 (133)
480 PLN02199 shikimate kinase 96.2 0.018 3.8E-07 61.3 8.4 33 365-397 102-134 (303)
481 PRK13541 cytochrome c biogenes 96.1 0.056 1.2E-06 53.4 11.3 27 363-389 24-50 (195)
482 PRK10263 DNA translocase FtsK; 96.1 0.033 7.1E-07 68.8 11.3 74 427-514 1143-1218(1355)
483 PF08433 KTI12: Chromatin asso 96.1 0.017 3.7E-07 60.7 7.9 70 368-437 4-83 (270)
484 cd02019 NK Nucleoside/nucleoti 96.1 0.0061 1.3E-07 50.5 3.6 22 368-389 2-23 (69)
485 TIGR02524 dot_icm_DotB Dot/Icm 96.1 0.01 2.3E-07 64.8 6.3 69 366-434 135-222 (358)
486 PRK14526 adenylate kinase; Pro 96.1 0.0057 1.2E-07 62.0 3.9 35 367-403 2-36 (211)
487 PRK12608 transcription termina 96.0 0.044 9.4E-07 60.2 10.9 23 367-389 135-157 (380)
488 cd03282 ABC_MSH4_euk MutS4 hom 96.0 0.031 6.7E-07 56.3 9.1 23 365-387 29-51 (204)
489 TIGR01448 recD_rel helicase, p 96.0 0.021 4.5E-07 67.9 9.1 97 367-481 340-455 (720)
490 COG2874 FlaH Predicted ATPases 96.0 0.051 1.1E-06 55.3 10.4 125 353-490 14-176 (235)
491 COG2074 2-phosphoglycerate kin 96.0 0.22 4.8E-06 51.8 15.1 191 362-581 86-287 (299)
492 cd03229 ABC_Class3 This class 96.0 0.018 4E-07 56.0 7.1 27 363-389 24-50 (178)
493 PF13086 AAA_11: AAA domain; P 96.0 0.0047 1E-07 61.0 3.0 22 368-389 20-41 (236)
494 PRK10078 ribose 1,5-bisphospho 96.0 0.007 1.5E-07 59.5 4.1 29 366-394 3-31 (186)
495 PF02562 PhoH: PhoH-like prote 96.0 0.0049 1.1E-07 62.3 3.0 23 367-389 21-43 (205)
496 COG1066 Sms Predicted ATP-depe 96.0 0.047 1E-06 60.2 10.6 78 363-440 91-184 (456)
497 TIGR03819 heli_sec_ATPase heli 96.0 0.0081 1.8E-07 65.1 4.9 70 365-434 178-263 (340)
498 PF08298 AAA_PrkA: PrkA AAA do 95.9 0.017 3.7E-07 62.6 7.2 81 331-418 59-142 (358)
499 PRK06581 DNA polymerase III su 95.9 0.18 3.9E-06 52.4 14.1 148 364-535 14-176 (263)
500 COG1136 SalX ABC-type antimicr 95.9 0.093 2E-06 53.9 12.0 25 363-387 29-53 (226)
No 1
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-72 Score=626.96 Aligned_cols=414 Identities=51% Similarity=0.712 Sum_probs=343.9
Q ss_pred ceechHHHHHHHHcCCccEEEEeCc--EEEEEEecCCcccchhhhhhhchhhhhhhhccCCcceeEEEecCCCCCcchHH
Q 006535 181 VSVPYSDFLSKINSNQVAKVEVDGV--HIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPYE 258 (641)
Q Consensus 181 ~~~~ys~f~~~~~~~~v~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~ 258 (641)
..++|++|++.+..++|++|.+++. .+..+.+++. ...+|.+....+.. ...
T Consensus 23 ~~~~~~~f~~~~~~~~v~~~~~~~~~~~v~~~~~~~~-------------------------~~~~~~~~~~~~~~-~~~ 76 (596)
T COG0465 23 KQVTYSQFIQLVSGGKVSSVSIKGDSKTVNLKLKDGS-------------------------KNTVYLPKGVNDPN-LVS 76 (596)
T ss_pred ccccHHHHHHHHhcCCceEEEEcCCceEEEEEecCCc-------------------------ceEEeecCCcccHH-HHH
Confidence 4589999999999999999999874 4555555541 11233333323332 344
Q ss_pred HHHhCCceeccCCCCCcchHHHHHHHHHHHHHHHHHHhhcccccccccCccccccCCCCCCCccccCCCccccccccCCh
Q 006535 259 KMLENQVEFGSPDKRSGGFLNSALIALFYVAVLAGLLHRFPVSFSQTAGQVGHRKTRGPGGAKVSEQGDTITFADVAGVD 338 (641)
Q Consensus 259 ~~~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~DV~G~e 338 (641)
.+..+++......+...+++...+..++++.++.+++..+.....+..+..+...++++......+....++|+|++|.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~il~~~~~~~~~~r~~~~g~g~~~~~~gkskak~~~~~~~~v~F~DVAG~d 156 (596)
T COG0465 77 FLDSNNITESGFIPEDNSLLASLLSTWLPFILLIGLGWFFFRRQAQGGGGGGAFSFGKSKAKLYLEDQVKVTFADVAGVD 156 (596)
T ss_pred HHHhcCCcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCChHHHHHhcccccCcChhhhcCcH
Confidence 56666665443332333344444444444443333221111111111111112223333222334556789999999999
Q ss_pred HHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHH
Q 006535 339 EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFA 418 (641)
Q Consensus 339 e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~vG~~~~~vr~lF~ 418 (641)
|+|++|.|+|++|++|.+|..+|++.|+|+||+||||||||+||||+|+|+++||+++++++|+++|+|.+++++|++|.
T Consensus 157 Eakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~ 236 (596)
T COG0465 157 EAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFE 236 (596)
T ss_pred HHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEE
Q 006535 419 RAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVV 498 (641)
Q Consensus 419 ~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I 498 (641)
+|++++||||||||||+++++|+.+ .++++++++|++||||.+||+|..+.+|+||++||+||.||+||+||||||++|
T Consensus 237 qAkk~aP~IIFIDEiDAvGr~Rg~g-~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI 315 (596)
T COG0465 237 QAKKNAPCIIFIDEIDAVGRQRGAG-LGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQI 315 (596)
T ss_pred HhhccCCCeEEEehhhhcccccCCC-CCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceee
Confidence 9999999999999999999999766 567899999999999999999999999999999999999999999999999999
Q ss_pred EecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcc
Q 006535 499 MVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAG 578 (641)
Q Consensus 499 ~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~rvi~g 578 (641)
.++.||..+|++|++.|++++ ++++++++..+|+.|+||+|+||.|++|+|++.|.++++..|++.||++|++++++|
T Consensus 316 ~V~~PDi~gRe~IlkvH~~~~--~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G 393 (596)
T COG0465 316 LVELPDIKGREQILKVHAKNK--PLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAG 393 (596)
T ss_pred ecCCcchhhHHHHHHHHhhcC--CCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcC
Confidence 999999999999999999764 677899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCChhHHHHHHHHHhHHHHHHhHHhhcCCCCCceeeEeeeecc
Q 006535 579 IEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRDSK 627 (641)
Q Consensus 579 ~~~~~~~l~~~ek~~va~hEaghAlv~~~l~~~~~~~~~v~kiti~~~~ 627 (641)
.+++...+++.+|+.+||||+|||+++. ++|++||||||||++-.
T Consensus 394 ~erks~vise~ek~~~AYhEaghalv~~----~l~~~d~v~KvtIiPrG 438 (596)
T COG0465 394 PERKSRVISEAEKKITAYHEAGHALVGL----LLPDADPVHKVTIIPRG 438 (596)
T ss_pred cCcCCcccChhhhcchHHHHHHHHHHHH----hCCCCcccceeeeccCc
Confidence 9999999999999999999999999997 89999999999999877
No 2
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-67 Score=591.68 Aligned_cols=298 Identities=61% Similarity=0.876 Sum_probs=285.8
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~ 403 (641)
+...+++|+||+|++++|++|.|+|.+|+||++|.++|+++|+|+||+||||||||+||||+|+|+|+||+++++++|++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 45566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCC
Q 006535 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (641)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~ 483 (641)
+++|.++.+++++|..|+.++||||||||||+++..|++....++++++++++||||.+||+|....+|+|+|+||+++.
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI 462 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc
Confidence 99999999999999999999999999999999999997545567899999999999999999999999999999999999
Q ss_pred CChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccc
Q 006535 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (641)
Q Consensus 484 LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~I 563 (641)
||+||+||||||++|.++.|+..+|.+|++.|+++.++. .+++++..+|.+|+||+|+||.|+||+|++.|.|++...|
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i 541 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREI 541 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCcc
Confidence 999999999999999999999999999999999886555 4778999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcchhhhhccCChhHHHHHHHHHhHHHHHHhHHhhcCCCCCceeeEeeeec
Q 006535 564 EKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRDS 626 (641)
Q Consensus 564 t~~d~~eAl~rvi~g~~~~~~~l~~~ek~~va~hEaghAlv~~~l~~~~~~~~~v~kiti~~~ 626 (641)
+..||+.|++|++.|++++...++.++++.+||||+|||+++| ++++.|||.|+||++-
T Consensus 542 ~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~----~l~~~dpl~kvsIiPG 600 (774)
T KOG0731|consen 542 GTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGW----LLEHADPLLKVSIIPG 600 (774)
T ss_pred chhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhc----cccccCcceeEEeccC
Confidence 9999999999999999999999999999999999999999998 6799999999999983
No 3
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-68 Score=569.28 Aligned_cols=294 Identities=54% Similarity=0.782 Sum_probs=281.8
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006535 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~ 402 (641)
.+...+++|+||-|+||+|++|+|+|++|++|++|.++|.+.|+||||+||||||||+||||+|+|+++||+++++++|-
T Consensus 295 p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 295 PEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFD 374 (752)
T ss_pred hhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchh
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC
Q 006535 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd 482 (641)
++|+|.+++++|++|..|++.+||||||||||+++.+|... ......+++||||.+||||..+.+||||+|||.|+
T Consensus 375 Em~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~----~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe 450 (752)
T KOG0734|consen 375 EMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS----DQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPE 450 (752)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc----HHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChh
Confidence 99999999999999999999999999999999999988642 23378999999999999999999999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 006535 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (641)
Q Consensus 483 ~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~ 562 (641)
.||+||.||||||++|.++.||..+|.+||+.|+.+ +++++++|+..||+-|.||+|+||+|++|.|++.|..++...
T Consensus 451 ~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k--i~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~ 528 (752)
T KOG0734|consen 451 ALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK--IPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEM 528 (752)
T ss_pred hhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc--CCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCccc
Confidence 999999999999999999999999999999999975 688899999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcchhhhhccCChhHHHHHHHHHhHHHHHHhHHhhcCCCCCceeeEeeeec
Q 006535 563 VEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRDS 626 (641)
Q Consensus 563 It~~d~~eAl~rvi~g~~~~~~~l~~~ek~~va~hEaghAlv~~~l~~~~~~~~~v~kiti~~~ 626 (641)
|++.|++.|-+|+++|.+++...++++.++++||||+|||||+. ...++.|+||+||.+-
T Consensus 529 VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~----yTk~A~PlhKaTImPR 588 (752)
T KOG0734|consen 529 VTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVAL----YTKGAMPLHKATIMPR 588 (752)
T ss_pred ccHHHHhhhhhheeecccccccccChhhhhhhhhhccCceEEEe----ecCCCccccceeeccC
Confidence 99999999999999999999999999999999999999999986 7889999999999864
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=2.6e-58 Score=524.72 Aligned_cols=421 Identities=43% Similarity=0.628 Sum_probs=335.4
Q ss_pred CccceechHHHHHHHHcCCccEEEEeCcEEEEEEecCCcccchhhhhhhchhhhhhhhccCCcceeEEEecCCCCCcchH
Q 006535 178 TTFVSVPYSDFLSKINSNQVAKVEVDGVHIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPY 257 (641)
Q Consensus 178 ~~~~~~~ys~f~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~ 257 (641)
....+++||+|++++++|+|++|.+.++.+...+....... ......|.+..|......+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~ 106 (638)
T CHL00176 47 KASSRMTYGRFLEYLDMGWIKKVDLYDNGRTAIVEASSPEL--------------------GNRPQRIRVELPVGASELI 106 (638)
T ss_pred CCCceecHHHHHHHHHcCCeeEEEEecCceEEEEeeccccC--------------------CCcceeEEEeCCCCCHHHH
Confidence 34557999999999999999999998765433221110000 0000124444453223456
Q ss_pred HHHHhCCceeccCCCCCcchHHH-HHHHHHHHHHHHHHHhhccccc--ccccCccccccCCCCCCCccccCCCccccccc
Q 006535 258 EKMLENQVEFGSPDKRSGGFLNS-ALIALFYVAVLAGLLHRFPVSF--SQTAGQVGHRKTRGPGGAKVSEQGDTITFADV 334 (641)
Q Consensus 258 ~~~~~~~v~~~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~DV 334 (641)
..+.+++|++...+.....++.. ++..+++.+++.++++.+.... ....++ ....+.+............++|+||
T Consensus 107 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~dv 185 (638)
T CHL00176 107 QKLKEANIDFDAHPPVLKSNIVTILSNLLLPLILIGVLWFFFQRSSNFKGGPGQ-NLMNFGKSKARFQMEADTGITFRDI 185 (638)
T ss_pred HHHHHcCCcEEecCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cccccchhHHHhhcccCCCCCHHhc
Confidence 77888999987655444444433 3333344444443332211111 011111 0111222222222344567999999
Q ss_pred cCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHH
Q 006535 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVR 414 (641)
Q Consensus 335 ~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~vG~~~~~vr 414 (641)
+|++++++++.++++++++|+.|..+|...|+|+||+||||||||++|+++|+++++||+.+++++|.+.+.|.+...++
T Consensus 186 ~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr 265 (638)
T CHL00176 186 AGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVR 265 (638)
T ss_pred cChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCc
Q 006535 415 DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRF 494 (641)
Q Consensus 415 ~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRF 494 (641)
++|..|+..+||||||||||.++..++.+. .+.+++..+++++||.+||++..+.+++||++||+++.+|++++|||||
T Consensus 266 ~lF~~A~~~~P~ILfIDEID~l~~~r~~~~-~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRF 344 (638)
T CHL00176 266 DLFKKAKENSPCIVFIDEIDAVGRQRGAGI-GGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRF 344 (638)
T ss_pred HHHHHHhcCCCcEEEEecchhhhhcccCCC-CCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccC
Confidence 999999999999999999999998775432 3467788999999999999999889999999999999999999999999
Q ss_pred ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 006535 495 DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (641)
Q Consensus 495 d~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~r 574 (641)
|+++.+++|+.++|.+||+.++++. .+.+++++..+|..|.||+|+||++++++|++.|.++++..|+.+||++|+++
T Consensus 345 d~~I~v~lPd~~~R~~IL~~~l~~~--~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~r 422 (638)
T CHL00176 345 DRQITVSLPDREGRLDILKVHARNK--KLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDR 422 (638)
T ss_pred ceEEEECCCCHHHHHHHHHHHHhhc--ccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Confidence 9999999999999999999999763 55677889999999999999999999999999999999999999999999999
Q ss_pred HhcchhhhhccCChhHHHHHHHHHhHHHHHHhHHhhcCCCCCceeeEeeeecc
Q 006535 575 SIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRDSK 627 (641)
Q Consensus 575 vi~g~~~~~~~l~~~ek~~va~hEaghAlv~~~l~~~~~~~~~v~kiti~~~~ 627 (641)
++.|.+++. ..++.+++++||||+||||+++ ++|+.+||+||||.+.-
T Consensus 423 v~~g~~~~~-~~~~~~~~~vA~hEaGhA~v~~----~l~~~~~v~kvtI~prg 470 (638)
T CHL00176 423 VIAGLEGTP-LEDSKNKRLIAYHEVGHAIVGT----LLPNHDPVQKVTLIPRG 470 (638)
T ss_pred HHhhhccCc-cccHHHHHHHHHHhhhhHHHHh----hccCCCceEEEEEeecC
Confidence 999988754 5678899999999999999997 78999999999998763
No 5
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-58 Score=475.71 Aligned_cols=255 Identities=47% Similarity=0.763 Sum_probs=244.5
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhH
Q 006535 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~ 401 (641)
.++.|.+||+||.|+++.+++++|.++. |++|+.|.++|..||+|||||||||||||+||||+|++.++.|+.+.+++|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 4567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC
Q 006535 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (641)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~p 481 (641)
+.+|.|++++.+|++|..|+.++||||||||||+++.+|-+. ..+++.|..+++-+||++||||++..+|-||+|||++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~-~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~ 300 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDS-GTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRP 300 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccC-CCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCc
Confidence 999999999999999999999999999999999999998654 3567889999999999999999999999999999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCc
Q 006535 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (641)
Q Consensus 482 d~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~ 561 (641)
|.|||||+||||||+.|+|++||.++|.+||+.|.++ +.+.+++|++.||+.|+|+|||||+++|.+|.+.|.|+.+.
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk--M~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~ 378 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK--MNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRD 378 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh--ccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccC
Confidence 9999999999999999999999999999999999976 57889999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcchh
Q 006535 562 VVEKIDFIHAVERSIAGIE 580 (641)
Q Consensus 562 ~It~~d~~eAl~rvi~g~~ 580 (641)
.||++||.+|+++++....
T Consensus 379 ~Vt~~DF~~Av~KV~~~~~ 397 (406)
T COG1222 379 EVTMEDFLKAVEKVVKKKK 397 (406)
T ss_pred eecHHHHHHHHHHHHhccc
Confidence 9999999999999987543
No 6
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-55 Score=487.20 Aligned_cols=326 Identities=38% Similarity=0.645 Sum_probs=287.9
Q ss_pred eEEEecCCCCCcchHHH-HHhCCceeccCCCC---------------------------CcchHHHHHHHHHHHHHHHHH
Q 006535 243 IVYTTTRPSDIKTPYEK-MLENQVEFGSPDKR---------------------------SGGFLNSALIALFYVAVLAGL 294 (641)
Q Consensus 243 ~~~~t~~~~~~~~~~~~-~~~~~v~~~~~~~~---------------------------~~~~~~~~l~~l~~~~~~~~~ 294 (641)
++.+|++|+.++..+++ .++++|+++.|+.. ++||++++|..+|..+.+...
T Consensus 323 vl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~ 402 (693)
T KOG0730|consen 323 VLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQAT 402 (693)
T ss_pred EEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHh
Confidence 46788899999887774 88999999998742 689999999999999998876
Q ss_pred HhhcccccccccCccccccCCCCCCCccccCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcC
Q 006535 295 LHRFPVSFSQTAGQVGHRKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGL 373 (641)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtf~DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GP 373 (641)
.+.+ ..+....++ .+.++......+.|+++|+||+|++++|++|++.|.| +++|+.|.++|..+|+|||||||
T Consensus 403 r~~~-~~~~~A~~~-----i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGP 476 (693)
T KOG0730|consen 403 RRTL-EIFQEALMG-----IRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGP 476 (693)
T ss_pred hhhH-HHHHHHHhc-----CCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECC
Confidence 6411 111111111 1223333445678999999999999999999999999 99999999999999999999999
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHH
Q 006535 374 PGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDERE 453 (641)
Q Consensus 374 PGTGKT~LAkAlA~elg~pfi~vs~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~ 453 (641)
||||||++|||+|++++++|+++.+.+++++|+|++++.++++|++|+..+|||||+||||+++..|++. ++...+
T Consensus 477 PGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~----~~~v~~ 552 (693)
T KOG0730|consen 477 PGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGS----SSGVTD 552 (693)
T ss_pred CCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCC----ccchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999743 236778
Q ss_pred HHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHH
Q 006535 454 QTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIA 533 (641)
Q Consensus 454 ~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA 533 (641)
+++++||++|||+....+|+||||||+|+.||+||+||||||+.|+|++||.+.|.+||+.++++ +++.+++|+.+||
T Consensus 553 RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk--mp~~~~vdl~~La 630 (693)
T KOG0730|consen 553 RVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK--MPFSEDVDLEELA 630 (693)
T ss_pred HHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc--CCCCccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999965 6888999999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHhcC--CccccHHHHHHHHHHHhcchh
Q 006535 534 SMTTGFTGADLANLVNEAALLAGRLN--KVVVEKIDFIHAVERSIAGIE 580 (641)
Q Consensus 534 ~~T~GfSgaDL~~Lv~eAal~A~r~~--~~~It~~d~~eAl~rvi~g~~ 580 (641)
+.|+|||||||.++|++|+..|.+++ ...|+.+||++|+..+...+.
T Consensus 631 ~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s~~ 679 (693)
T KOG0730|consen 631 QATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPSLT 679 (693)
T ss_pred HHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcccCC
Confidence 99999999999999999999999874 467899999999987765443
No 7
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=1.3e-53 Score=489.40 Aligned_cols=410 Identities=48% Similarity=0.729 Sum_probs=336.7
Q ss_pred eechHHHHHHHHcCCccEEEEeCcEEEEEEecCCcccchhhhhhhchhhhhhhhccCCcceeEEEecCCCCCcchHHHHH
Q 006535 182 SVPYSDFLSKINSNQVAKVEVDGVHIMFKLKNDGSIQESEVITNKFQESESLLKSVTPTKRIVYTTTRPSDIKTPYEKML 261 (641)
Q Consensus 182 ~~~ys~f~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 261 (641)
.++|+.|.+.+.++.+.++.+....|.+..+++. .|.+..|.+....+..+.
T Consensus 31 ~~~~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~----------------------------~~~~~~~~~~~~l~~~l~ 82 (644)
T PRK10733 31 KVDYSTFLQEVNQDQVREARINGREINVTKKDSN----------------------------RYTTYIPVNDPKLLDNLL 82 (644)
T ss_pred cCCHHHHHHHHHcCCeEEEEEeCCEEEEEEcCCc----------------------------eEEEeCCCCCHHHHHHHH
Confidence 5899999999999999999998888777654431 233433422234566788
Q ss_pred hCCceeccCCCCCcchHHHHHHHHHHHHHHHHHHhhcccccccccC-ccccccCCCCCCCccccCCCccccccccCChHH
Q 006535 262 ENQVEFGSPDKRSGGFLNSALIALFYVAVLAGLLHRFPVSFSQTAG-QVGHRKTRGPGGAKVSEQGDTITFADVAGVDEA 340 (641)
Q Consensus 262 ~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vtf~DV~G~ee~ 340 (641)
++++.+...+.....++..++..+.+++++.+++..+...++ .| ......+.........+.....+|+|+.|.+.+
T Consensus 83 ~~~v~~~~~~~~~~~~~~~i~~~~~~~il~ig~~~v~~g~mt--~G~~~~l~af~~~~~~~~~~~~~~~~~~di~g~~~~ 160 (644)
T PRK10733 83 TKNVKVVGEPPEEPSLLASIFISWFPMLLLIGVWIFFMRQMQ--GGGGKGAMSFGKSKARMLTEDQIKTTFADVAGCDEA 160 (644)
T ss_pred HcCCeEEecCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCCceeEEeccccccccCchhhhCcHHHHcCHHHH
Confidence 888888765444334444433333333333332221111111 11 001111222222223334456789999999999
Q ss_pred HHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHHHH
Q 006535 341 KEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARA 420 (641)
Q Consensus 341 K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~vG~~~~~vr~lF~~A 420 (641)
++++.++++++..+..|..++...|+|+||+||||||||++|+++|+++++||+.++++++.+.+.+.++..++++|..|
T Consensus 161 ~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a 240 (644)
T PRK10733 161 KEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA 240 (644)
T ss_pred HHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEe
Q 006535 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMV 500 (641)
Q Consensus 421 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v 500 (641)
+..+||||||||||.++..++.+. .+++++.++++++||.+||++..+.+++||+|||+|+.||++++||||||+++.+
T Consensus 241 ~~~~P~IifIDEiD~l~~~r~~~~-~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v 319 (644)
T PRK10733 241 KKAAPCIIFIDEIDAVGRQRGAGL-GGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVV 319 (644)
T ss_pred HhcCCcEEEehhHhhhhhccCCCC-CCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEc
Confidence 999999999999999998876432 3456788899999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcchh
Q 006535 501 ETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIE 580 (641)
Q Consensus 501 ~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~rvi~g~~ 580 (641)
++||.++|.+||+.|+.+ .++..++++..+|+.|.||||+||.++|++|+..|.+.++..|+..||++|++++..+.+
T Consensus 320 ~~Pd~~~R~~Il~~~~~~--~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g~~ 397 (644)
T PRK10733 320 GLPDVRGREQILKVHMRR--VPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAE 397 (644)
T ss_pred CCCCHHHHHHHHHHHhhc--CCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhcccc
Confidence 999999999999999965 467788999999999999999999999999999999999999999999999999999988
Q ss_pred hhhccCChhHHHHHHHHHhHHHHHHhHHhhcCCCCCceeeEeeeeccc
Q 006535 581 KKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRDSKS 628 (641)
Q Consensus 581 ~~~~~l~~~ek~~va~hEaghAlv~~~l~~~~~~~~~v~kiti~~~~~ 628 (641)
++...+++++++.++|||+|||++++ ++|..+||+||||++--.
T Consensus 398 ~~~~~~~~~~~~~~a~he~gha~~~~----~~~~~~~~~~v~i~prg~ 441 (644)
T PRK10733 398 RRSMVMTEAQKESTAYHEAGHAIIGR----LVPEHDPVHKVTIIPRGR 441 (644)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHH----HccCCCceeEEEEeccCC
Confidence 87778889999999999999999997 789999999999987543
No 8
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-54 Score=469.10 Aligned_cols=337 Identities=36% Similarity=0.587 Sum_probs=285.7
Q ss_pred eeEEEecCCCCCcchHHH--HHhCCceeccCCCC---------------------------CcchHHHHHHHHHHHHHHH
Q 006535 242 RIVYTTTRPSDIKTPYEK--MLENQVEFGSPDKR---------------------------SGGFLNSALIALFYVAVLA 292 (641)
Q Consensus 242 ~~~~~t~~~~~~~~~~~~--~~~~~v~~~~~~~~---------------------------~~~~~~~~l~~l~~~~~~~ 292 (641)
-++.+|++|+.+++.+++ +++++|.++.|++. ++||++++|.+|+..+.+.
T Consensus 331 lVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~v 410 (802)
T KOG0733|consen 331 LVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFV 410 (802)
T ss_pred EEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHH
Confidence 356799999999988874 78999999988753 6899999999999999988
Q ss_pred HHHhhccccc-----cc-ccC---------c--cc-----c---------------ccC---------------------
Q 006535 293 GLLHRFPVSF-----SQ-TAG---------Q--VG-----H---------------RKT--------------------- 314 (641)
Q Consensus 293 ~~~~~~~~~~-----~~-~~~---------~--~~-----~---------------~~~--------------------- 314 (641)
++-+.+-..- .. ..+ + .. . ...
T Consensus 411 AikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al 490 (802)
T KOG0733|consen 411 AIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEAL 490 (802)
T ss_pred HHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHH
Confidence 8765331100 00 000 0 00 0 000
Q ss_pred ---CCCCCCccccCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC
Q 006535 315 ---RGPGGAKVSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE 390 (641)
Q Consensus 315 ---~~~~~~~~~~~~~~vtf~DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg 390 (641)
.++........-|.++|+||.|+++++.+|...+.+ .++|+.|..+|...|.|||||||||||||+||||+|+|+|
T Consensus 491 ~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag 570 (802)
T KOG0733|consen 491 SKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAG 570 (802)
T ss_pred HhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhcc
Confidence 000001111234789999999999999999988777 9999999999999999999999999999999999999999
Q ss_pred CCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCC
Q 006535 391 VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (641)
Q Consensus 391 ~pfi~vs~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~ 470 (641)
.+|++|.+.+++++|+|+++..||.+|..|+..+||||||||+|+|.+.|+.. +.....+++||||++|||+....
T Consensus 571 ~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~----~s~~s~RvvNqLLtElDGl~~R~ 646 (802)
T KOG0733|consen 571 ANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDE----GSSVSSRVVNQLLTELDGLEERR 646 (802)
T ss_pred CceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCC----CchhHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999754 35667899999999999999999
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC--CCCHHHHHHHH
Q 006535 471 AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT--GFTGADLANLV 548 (641)
Q Consensus 471 ~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~--GfSgaDL~~Lv 548 (641)
+|.||||||+||.+|||++||||||+.++|++|+.++|.+||+.+.++.+.++.+|||+++||+.+. ||||+||..||
T Consensus 647 gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLv 726 (802)
T KOG0733|consen 647 GVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALV 726 (802)
T ss_pred ceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHH
Confidence 9999999999999999999999999999999999999999999999877789999999999999777 99999999999
Q ss_pred HHHHHHHHhcC----------------CccccHHHHHHHHHHHhcchhhh
Q 006535 549 NEAALLAGRLN----------------KVVVEKIDFIHAVERSIAGIEKK 582 (641)
Q Consensus 549 ~eAal~A~r~~----------------~~~It~~d~~eAl~rvi~g~~~~ 582 (641)
++|.+.|.++. ...++..||++|+.++.....++
T Consensus 727 reAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~ 776 (802)
T KOG0733|consen 727 REASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSER 776 (802)
T ss_pred HHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccHH
Confidence 99999998741 12467789999999987665443
No 9
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.3e-50 Score=452.54 Aligned_cols=300 Identities=62% Similarity=0.886 Sum_probs=278.2
Q ss_pred ccccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhh
Q 006535 321 KVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (641)
Q Consensus 321 ~~~~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se 400 (641)
...++.+.++|+||+|++++|+++.++++++++|+.|..+|..+|+|+||+||||||||++|+++|+++++||+.+++++
T Consensus 44 ~~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~ 123 (495)
T TIGR01241 44 LLNEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSD 123 (495)
T ss_pred cccCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCC
Q 006535 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (641)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~ 480 (641)
+.+.+.|.+++.++++|+.|+..+||||||||||.++..++.. ....+++..+++++||.+||++..+.+++||+|||+
T Consensus 124 ~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~-~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~ 202 (495)
T TIGR01241 124 FVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG-LGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNR 202 (495)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccC-cCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCC
Confidence 9999999999999999999999999999999999999887643 223467788999999999999998889999999999
Q ss_pred CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCC
Q 006535 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (641)
Q Consensus 481 pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~ 560 (641)
++.||++++||||||+.++++.|+.++|.+|++.++.+. ++..++++..+|..+.|||++||.++|++|+..|.++++
T Consensus 203 ~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~--~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~ 280 (495)
T TIGR01241 203 PDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK--KLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNK 280 (495)
T ss_pred hhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC--CCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999764 445678899999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhcchhhhhccCChhHHHHHHHHHhHHHHHHhHHhhcCCCCCceeeEeeeecc
Q 006535 561 VVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRDSK 627 (641)
Q Consensus 561 ~~It~~d~~eAl~rvi~g~~~~~~~l~~~ek~~va~hEaghAlv~~~l~~~~~~~~~v~kiti~~~~ 627 (641)
..|+.+||.+|++++..+.+.....+++.+++.+||||+||||+++ +++..+||++|||.+..
T Consensus 281 ~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~~----~l~~~~~v~~vsi~prg 343 (495)
T TIGR01241 281 TEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGHALVGL----LLKDADPVHKVTIIPRG 343 (495)
T ss_pred CCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhHHHHHH----hcCCCCceEEEEEeecC
Confidence 9999999999999999998877778899999999999999999997 77888999999997753
No 10
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=1.3e-47 Score=457.81 Aligned_cols=260 Identities=22% Similarity=0.307 Sum_probs=225.9
Q ss_pred hhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHH----------------------------
Q 006535 354 PDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY---------------------------- 405 (641)
Q Consensus 354 p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~---------------------------- 405 (641)
...+.++|+.+|+||||+||||||||+||||+|+++++||+.+++++|++.+
T Consensus 1619 kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~ 1698 (2281)
T CHL00206 1619 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLD 1698 (2281)
T ss_pred cCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccc
Confidence 3456788999999999999999999999999999999999999999998643
Q ss_pred -------------h--hcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC---
Q 006535 406 -------------V--GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--- 467 (641)
Q Consensus 406 -------------v--G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~--- 467 (641)
+ +++..+++.+|+.|++++||||||||||+++.+. ....++++|+.+|++..
T Consensus 1699 ~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d----------s~~ltL~qLLneLDg~~~~~ 1768 (2281)
T CHL00206 1699 TELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE----------SNYLSLGLLVNSLSRDCERC 1768 (2281)
T ss_pred hhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc----------cceehHHHHHHHhccccccC
Confidence 1 2233458999999999999999999999997542 22356899999999864
Q ss_pred CCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCC-CCHHHHHHhCCCCCHHHHHH
Q 006535 468 SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-IDLGDIASMTTGFTGADLAN 546 (641)
Q Consensus 468 ~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~d-vdl~~LA~~T~GfSgaDL~~ 546 (641)
...+|+||||||+|+.|||||+||||||+.|.|+.|+..+|++++..++..+++++.++ ++++.+|+.|.|||||||++
T Consensus 1769 s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLan 1848 (2281)
T CHL00206 1769 STRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVA 1848 (2281)
T ss_pred CCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHH
Confidence 45689999999999999999999999999999999999999999987765566777654 68999999999999999999
Q ss_pred HHHHHHHHHHhcCCccccHHHHHHHHHHHhcchhhhhccCChhHHHHHHHHHhHHHHHHhHHhhcCCCCCceeeEeeeec
Q 006535 547 LVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRDS 626 (641)
Q Consensus 547 Lv~eAal~A~r~~~~~It~~d~~eAl~rvi~g~~~~~~~l~~~ek~~va~hEaghAlv~~~l~~~~~~~~~v~kiti~~~ 626 (641)
+|+||++.|.++++..|+.++++.|++|++.|++.+.. ...++ .+++||+||||++. ++++.+||+||||++.
T Consensus 1849 LvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~~--~~~~~-~ia~yEiGhAvvq~----~L~~~~pv~kISIy~~ 1921 (2281)
T CHL00206 1849 LTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVR--SVQDH-GILFYQIGRAVAQN----VLLSNCPIDPISIYMK 1921 (2281)
T ss_pred HHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhccc--Ccchh-hhhhhHHhHHHHHH----hccCCCCcceEEEecC
Confidence 99999999999999999999999999999999875433 23333 36999999999997 7899999999999977
Q ss_pred cccc
Q 006535 627 KSQC 630 (641)
Q Consensus 627 ~~~~ 630 (641)
+..|
T Consensus 1922 ~~~~ 1925 (2281)
T CHL00206 1922 KKSC 1925 (2281)
T ss_pred Cccc
Confidence 6543
No 11
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-45 Score=369.11 Aligned_cols=258 Identities=41% Similarity=0.682 Sum_probs=244.5
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhH
Q 006535 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~ 401 (641)
.++.|.+|+.||.|+.+..+.|+|+++. +.+|++|..+|..+|+|||||||||||||++|+|+|+..+.-|+.+-++++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 4778999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC
Q 006535 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (641)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~p 481 (641)
+.+|+|+++..+|++|+.|+....||||+||||++++.|-+. ..+++.+..+++-+|+.++|+|....+|-|+.|||+|
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfdd-g~ggdnevqrtmleli~qldgfdprgnikvlmatnrp 326 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDD-GAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRP 326 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccC-CCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCC
Confidence 999999999999999999999999999999999999888543 2457788899999999999999999999999999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCc
Q 006535 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKV 561 (641)
Q Consensus 482 d~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~ 561 (641)
+.|||||+||||+|+.++|.+||.+.|..|++.|.+. +.+..++-++.||+.++.-+|++|+.+|.+|.+.|++..+.
T Consensus 327 dtldpallrpgrldrkvef~lpdlegrt~i~kihaks--msverdir~ellarlcpnstgaeirsvcteagmfairarrk 404 (435)
T KOG0729|consen 327 DTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKS--MSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRK 404 (435)
T ss_pred CCcCHhhcCCcccccceeccCCcccccceeEEEeccc--cccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhh
Confidence 9999999999999999999999999999999999854 57788899999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcchhhhh
Q 006535 562 VVEKIDFIHAVERSIAGIEKKT 583 (641)
Q Consensus 562 ~It~~d~~eAl~rvi~g~~~~~ 583 (641)
..|..||.+|+.+++.|..+.+
T Consensus 405 ~atekdfl~av~kvvkgy~kfs 426 (435)
T KOG0729|consen 405 VATEKDFLDAVNKVVKGYAKFS 426 (435)
T ss_pred hhhHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999977654
No 12
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-44 Score=359.25 Aligned_cols=251 Identities=44% Similarity=0.705 Sum_probs=238.2
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~ 402 (641)
.+.|.+++.||.|++-.|++++|.++. +.+.+.|.+.|..+|+|||||||||||||+||+|+|+.....|+.+.+++|+
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 466889999999999999999999999 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC
Q 006535 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd 482 (641)
.+|.|++...+|++|..|+.++|+||||||||+++.+|-+. ..+.+.+..+++-+||++||||....+|-||.+||+.+
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfda-qtgadrevqril~ellnqmdgfdq~~nvkvimatnrad 305 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDA-QTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD 305 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccc-cccccHHHHHHHHHHHHhccCcCcccceEEEEecCccc
Confidence 99999999999999999999999999999999999888554 25678888999999999999999999999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 006535 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (641)
Q Consensus 483 ~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~ 562 (641)
.|||||+||||+|+.|+|++||..+++-++.....+ +.+.+++|++.+..+-+..||+||..+|++|.+.|.|.++-.
T Consensus 306 tldpallrpgrldrkiefplpdrrqkrlvf~titsk--m~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryv 383 (408)
T KOG0727|consen 306 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSK--MNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYV 383 (408)
T ss_pred ccCHhhcCCccccccccCCCCchhhhhhhHHhhhhc--ccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhccee
Confidence 999999999999999999999999999999998876 467899999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhc
Q 006535 563 VEKIDFIHAVERSIA 577 (641)
Q Consensus 563 It~~d~~eAl~rvi~ 577 (641)
|...||++|...++.
T Consensus 384 vl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 384 VLQKDFEKAYKTVVK 398 (408)
T ss_pred eeHHHHHHHHHhhcC
Confidence 999999999987764
No 13
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-44 Score=401.78 Aligned_cols=251 Identities=39% Similarity=0.658 Sum_probs=226.5
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~ 402 (641)
.+-|+|+|+||.|++++|.++.+-+.. |++|+.|.. |.++..|||||||||||||++|||+|.|+...|++|.+.+++
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 456899999999999999999999988 999987654 888889999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC--CCCcEEEEEecCC
Q 006535 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--SNSAVIVLGATNR 480 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~--~~~~ViVIaATN~ 480 (641)
+||+|++++++|++|++|+..+|||||+||+|.|+++|+.... +....++++.|||.|||++. +...|+||+||||
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGD--SGGVMDRVVSQLLAELDgls~~~s~~VFViGATNR 820 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGD--SGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNR 820 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCC--ccccHHHHHHHHHHHhhcccCCCCCceEEEecCCC
Confidence 9999999999999999999999999999999999999986543 34578899999999999997 5678999999999
Q ss_pred CCCCChhhhCCCCcceEEEecCCC-HHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC-CCCHHHHHHHHHHHHHHHHhc
Q 006535 481 SDVLDPALRRPGRFDRVVMVETPD-KIGREAILKVHVSKKELPLAKDIDLGDIASMTT-GFTGADLANLVNEAALLAGRL 558 (641)
Q Consensus 481 pd~LD~ALlRpgRFd~~I~v~~Pd-~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~-GfSgaDL~~Lv~eAal~A~r~ 558 (641)
||.|||||+||||||+.+++.+++ .+.+..+|+...++ +.++++||+.+||++++ .|||||+-.+|..|.+.|.++
T Consensus 821 PDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk--FkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR 898 (953)
T KOG0736|consen 821 PDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK--FKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKR 898 (953)
T ss_pred ccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH--ccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999885 56677899988865 57899999999999875 699999999999999999875
Q ss_pred -----------------CCccccHHHHHHHHHHHhcch
Q 006535 559 -----------------NKVVVEKIDFIHAVERSIAGI 579 (641)
Q Consensus 559 -----------------~~~~It~~d~~eAl~rvi~g~ 579 (641)
..-.|+++||.+|+++....+
T Consensus 899 ~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSv 936 (953)
T KOG0736|consen 899 TIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSV 936 (953)
T ss_pred HHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcc
Confidence 124689999999998876543
No 14
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-44 Score=395.09 Aligned_cols=227 Identities=45% Similarity=0.764 Sum_probs=214.1
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHH
Q 006535 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (641)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~ 405 (641)
.+.++|.||.|++....+|.+++..+++|+.|..+|..||+||||+||||||||+||+|+|+|+++||+.+++.++++.+
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCC----CcEEEEEecCCC
Q 006535 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN----SAVIVLGATNRS 481 (641)
Q Consensus 406 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~----~~ViVIaATN~p 481 (641)
.|++++++|++|++|+..+|||+||||||+++++|+. ++.+...+++.|||+.||++... .+|+||+|||+|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~----aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE----AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhh----HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 9999999999999999999999999999999999974 34455568999999999998654 679999999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 006535 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (641)
Q Consensus 482 d~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~ 558 (641)
|.|||+|+|+||||+.|.+..|+..+|.+||+..+++ +.++.++|+..||+.|+||.|+||..||.+|+..|.++
T Consensus 340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~--lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRG--LRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred cccCHHHhccccccceeeecCCchHHHHHHHHHHHhh--CCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999964 67778999999999999999999999999999999875
No 15
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-44 Score=359.54 Aligned_cols=252 Identities=41% Similarity=0.659 Sum_probs=239.1
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~ 402 (641)
+.-|..+++-|.|++...++++|+++. .++|+.|..+|...|+|+|||||||||||+||+|+|....+.|+.+++++++
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 344677899999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC
Q 006535 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd 482 (641)
.+|.|++...+|++|-.|+.++|+|||+||||.++..|..+. .+++.+..++.-+||.++|+|+...++-||.|||+.|
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~-~ggdsevqrtmlellnqldgfeatknikvimatnrid 297 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESG-SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRID 297 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCC-CCccHHHHHHHHHHHHhccccccccceEEEEeccccc
Confidence 999999999999999999999999999999999999887653 4578888999999999999999999999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 006535 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (641)
Q Consensus 483 ~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~ 562 (641)
.|||||+||||+|+.|+|++|+.+.|.+||+.|.++. .+...+++..+|+...|.||+++..+|.+|.+.|.|+.+..
T Consensus 298 ild~allrpgridrkiefp~p~e~ar~~ilkihsrkm--nl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvh 375 (404)
T KOG0728|consen 298 ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM--NLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVH 375 (404)
T ss_pred cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhh--chhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhcc
Confidence 9999999999999999999999999999999999764 66788999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcc
Q 006535 563 VEKIDFIHAVERSIAG 578 (641)
Q Consensus 563 It~~d~~eAl~rvi~g 578 (641)
||++||+-|+.+++..
T Consensus 376 vtqedfemav~kvm~k 391 (404)
T KOG0728|consen 376 VTQEDFEMAVAKVMQK 391 (404)
T ss_pred ccHHHHHHHHHHHHhc
Confidence 9999999999998753
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-44 Score=357.26 Aligned_cols=251 Identities=38% Similarity=0.654 Sum_probs=236.7
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~ 402 (641)
.+.|+-+++||.|++...++|.+.+.. +.++++|..+|.++|+|+|+|||||||||++|||.|...+..|..+.+..++
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 456778999999999999999886665 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC
Q 006535 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd 482 (641)
.+|.|.+++.+|+.|..|+..+|+||||||+|+++.+|.++. ..++.+..+++-+||.++|||.+...|-|||+||+.+
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSe-k~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvD 321 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE-KAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVD 321 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhcccccccc-ccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccc
Confidence 999999999999999999999999999999999999886543 4567788999999999999999999999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 006535 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (641)
Q Consensus 483 ~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~ 562 (641)
.|||||+|.||+|+.|+|+.|+.+.|..|++.|.++ +.+.+|++++++|+.|++|+|+++..+|-+|.++|.|++...
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRK--Mnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~ate 399 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRK--MNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATE 399 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhh--cCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccccc
Confidence 999999999999999999999999999999999976 466789999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhc
Q 006535 563 VEKIDFIHAVERSIA 577 (641)
Q Consensus 563 It~~d~~eAl~rvi~ 577 (641)
|+.+||.+++.++.+
T Consensus 400 v~heDfmegI~eVqa 414 (424)
T KOG0652|consen 400 VTHEDFMEGILEVQA 414 (424)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999988764
No 17
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=4.7e-43 Score=351.91 Aligned_cols=243 Identities=39% Similarity=0.613 Sum_probs=222.5
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006535 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~ 402 (641)
.+..+.++|+||+|++++|+..+-++++|.+|++|..+ .|++||+|||||||||++|||+|+++++||+.+...+++
T Consensus 112 ~e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~li 188 (368)
T COG1223 112 REIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELI 188 (368)
T ss_pred hhhhccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHH
Confidence 35567899999999999999999999999999998654 689999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC
Q 006535 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd 482 (641)
..++|.++.+++++|+.|++.+|||+||||+|+++-.|.-. .......+++|.||++||+...+.+|+.|||||+|+
T Consensus 189 GehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQ---elRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~ 265 (368)
T COG1223 189 GEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQ---ELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPE 265 (368)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHH---HhcccHHHHHHHHHHhccCcccCCceEEEeecCChh
Confidence 99999999999999999999999999999999998766421 122345678999999999999999999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHH-HHHHHHHHHHHhcCCc
Q 006535 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLA-NLVNEAALLAGRLNKV 561 (641)
Q Consensus 483 ~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~-~Lv~eAal~A~r~~~~ 561 (641)
.||+|+++ ||...|+|.+|+.++|.+|++.++++. ++.-+.+++.++..|.|+||+||. .++..|...|..++++
T Consensus 266 ~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~--Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e 341 (368)
T COG1223 266 LLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKF--PLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDRE 341 (368)
T ss_pred hcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhC--CCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchh
Confidence 99999999 999999999999999999999999764 666677899999999999999995 6788899999999999
Q ss_pred cccHHHHHHHHHHH
Q 006535 562 VVEKIDFIHAVERS 575 (641)
Q Consensus 562 ~It~~d~~eAl~rv 575 (641)
.|+.+|++.|+.+.
T Consensus 342 ~v~~edie~al~k~ 355 (368)
T COG1223 342 KVEREDIEKALKKE 355 (368)
T ss_pred hhhHHHHHHHHHhh
Confidence 99999999999873
No 18
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-43 Score=361.01 Aligned_cols=253 Identities=41% Similarity=0.679 Sum_probs=239.9
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~ 402 (641)
+..|.-+|+|+.|++...++++|.++. |.+|+-|..+|.++|+||+|||+||||||+||+|+|+.....|+.+-+++++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 456778999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC
Q 006535 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd 482 (641)
.+|.|.+.+.+|++|..|..++|+|+||||||+++.+|-+. ..++..+..+++-+||+++|+|++...|-||.|||+.+
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds-~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie 335 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDS-NSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 335 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccC-CCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccc
Confidence 99999999999999999999999999999999999988654 34567788899999999999999999999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 006535 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (641)
Q Consensus 483 ~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~ 562 (641)
.|||||.||||+|+.|+|+.||...++.|+..|..+ +.+.++++++.+...-+.+||+||..+|.+|.++|.|..+..
T Consensus 336 ~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~--Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~ 413 (440)
T KOG0726|consen 336 TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSR--MTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMK 413 (440)
T ss_pred ccCHhhcCCCccccccccCCCchhhhceeEEEeecc--cchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhh
Confidence 999999999999999999999999999999999876 577899999999998899999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcch
Q 006535 563 VEKIDFIHAVERSIAGI 579 (641)
Q Consensus 563 It~~d~~eAl~rvi~g~ 579 (641)
|+++||..|.++++...
T Consensus 414 vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 414 VTMEDFKKAKEKVLYKK 430 (440)
T ss_pred ccHHHHHHHHHHHHHhc
Confidence 99999999999998643
No 19
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-43 Score=365.53 Aligned_cols=249 Identities=37% Similarity=0.581 Sum_probs=224.2
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~ 402 (641)
...|.+.|+||+|++++|+.|+|.|.. +.-|+.|. -..+|.+|||++||||||||+||||+|.|++..||.|+.+.+.
T Consensus 204 ~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~-GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 204 QRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFK-GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred ccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHh-hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 345789999999999999999998877 77776554 4577889999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCC----CcEEEEEec
Q 006535 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN----SAVIVLGAT 478 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~----~~ViVIaAT 478 (641)
++|.|++++.||-+|+.|+.++|++|||||||.|+.+|++. ..++..+++-++||.+|||.... .-|+|+|||
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s---~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAAT 359 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS---SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAAT 359 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc---cchhHHHHHHHHHHHHhhccccccccceeEEEEecc
Confidence 99999999999999999999999999999999999999753 57778889999999999998543 338999999
Q ss_pred CCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 006535 479 NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (641)
Q Consensus 479 N~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~ 558 (641)
|.|+.||+||+| ||.+.|+|++||.++|..+|+..++. .+++++++++.||+.++||||+||.++|++|.+.+.|+
T Consensus 360 N~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~--~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR 435 (491)
T KOG0738|consen 360 NFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRS--VELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRR 435 (491)
T ss_pred CCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhcc--ccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999999954 68889999999999999999999999999999999874
Q ss_pred C-----------------CccccHHHHHHHHHHHhcchh
Q 006535 559 N-----------------KVVVEKIDFIHAVERSIAGIE 580 (641)
Q Consensus 559 ~-----------------~~~It~~d~~eAl~rvi~g~~ 580 (641)
. +..|+++||++|+.++.....
T Consensus 436 ~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 436 KIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 1 234788999999988765443
No 20
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=369.81 Aligned_cols=252 Identities=42% Similarity=0.677 Sum_probs=233.9
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~ 402 (641)
++.|.++|+||+|++.+|+++++.+++ +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 456889999999999999999999986 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC
Q 006535 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd 482 (641)
..|.|.++..++++|..|+..+||||||||||.++.++.+.. .+.+.+..+++.+|+..|+++....+++||+|||+++
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~-~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d 295 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ-TGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 295 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcccccccc-CCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCch
Confidence 999999999999999999999999999999999987764321 2334566788999999999998888999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 006535 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (641)
Q Consensus 483 ~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~ 562 (641)
.||++++||||||+.|++++|+.++|.+|++.++.+ ..+..++++..++..|+||||+||.++|++|.+.|.++++..
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~--~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~ 373 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK--MNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYV 373 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc--CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 999999999999999999999999999999999875 456788999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcc
Q 006535 563 VEKIDFIHAVERSIAG 578 (641)
Q Consensus 563 It~~d~~eAl~rvi~g 578 (641)
|+.+||.+|+++++.+
T Consensus 374 i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 374 ILPKDFEKGYKTVVRK 389 (398)
T ss_pred cCHHHHHHHHHHHHhc
Confidence 9999999999998765
No 21
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.6e-40 Score=387.15 Aligned_cols=251 Identities=45% Similarity=0.795 Sum_probs=229.6
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~ 402 (641)
.+.+.++|+||+|++++|++|++.+.+ +++++.|..+|.++|+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 445 ~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~ 524 (733)
T TIGR01243 445 VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIL 524 (733)
T ss_pred ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHh
Confidence 345789999999999999999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC
Q 006535 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd 482 (641)
++|+|++++.++.+|..|+..+||||||||||.+++.++.. .......+++++||.+||++....+++||+|||+|+
T Consensus 525 ~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~---~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~ 601 (733)
T TIGR01243 525 SKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGAR---FDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPD 601 (733)
T ss_pred hcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCC---CCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChh
Confidence 99999999999999999999999999999999999887642 123355789999999999998888999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC---
Q 006535 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN--- 559 (641)
Q Consensus 483 ~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~--- 559 (641)
.||++++||||||+.+++++||.++|.+||+.+.++ .++.+++++..+|+.|+||||+||.++|++|++.|.++.
T Consensus 602 ~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~--~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~ 679 (733)
T TIGR01243 602 ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS--MPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGS 679 (733)
T ss_pred hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC--CCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999998854 577788999999999999999999999999999887741
Q ss_pred ---------------CccccHHHHHHHHHHHhcch
Q 006535 560 ---------------KVVVEKIDFIHAVERSIAGI 579 (641)
Q Consensus 560 ---------------~~~It~~d~~eAl~rvi~g~ 579 (641)
...|+.+||.+|+.++....
T Consensus 680 ~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~ 714 (733)
T TIGR01243 680 PAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSV 714 (733)
T ss_pred ccchhhhcccccccccCcccHHHHHHHHHHcCCCC
Confidence 13689999999998875543
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=2.7e-40 Score=359.39 Aligned_cols=255 Identities=47% Similarity=0.767 Sum_probs=234.8
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~ 402 (641)
.+.|.++|+||+|++++++++.+.+.. +.+|+.|..+|..+|++||||||||||||++|+++|++++.+|+.++++++.
T Consensus 123 ~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~ 202 (389)
T PRK03992 123 IESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 202 (389)
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh
Confidence 455789999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC
Q 006535 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd 482 (641)
..|.|.++..++.+|..|+..+||||||||+|.++..+.+.. ..+..+..+++.+++.+++++....++.||+|||+++
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~-~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~ 281 (389)
T PRK03992 203 QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSG-TSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRID 281 (389)
T ss_pred HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCC-CCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChh
Confidence 999999999999999999999999999999999988775432 2234566788999999999998888999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 006535 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (641)
Q Consensus 483 ~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~ 562 (641)
.+|++++||||||+.|+|++|+.++|.+||+.++.+ ..+..++++..+|..|+||+|+||..+|++|+..|.+++...
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~--~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~ 359 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK--MNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTE 359 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc--CCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999865 456677899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcchhh
Q 006535 563 VEKIDFIHAVERSIAGIEK 581 (641)
Q Consensus 563 It~~d~~eAl~rvi~g~~~ 581 (641)
|+.+||.+|++++..+..+
T Consensus 360 i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 360 VTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred cCHHHHHHHHHHHhccccc
Confidence 9999999999998775443
No 23
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-40 Score=366.02 Aligned_cols=225 Identities=42% Similarity=0.666 Sum_probs=212.9
Q ss_pred ccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHh
Q 006535 328 TITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (641)
Q Consensus 328 ~vtf~DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~v 406 (641)
.+.|+||+|+.++|+.|+++++| -+.|..|...+.+.+.|||||||||||||+||-|+|..++..|+++.+.+++++|.
T Consensus 663 gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI 742 (952)
T KOG0735|consen 663 GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI 742 (952)
T ss_pred CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence 49999999999999999999999 88999999999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCCh
Q 006535 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDP 486 (641)
Q Consensus 407 G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ 486 (641)
|.+++.+|++|.+|+..+|||+|+||+|.++++|+.. +.....+++||||++|||.+.-.+|.|+|||.|||.|||
T Consensus 743 GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD----sTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDp 818 (952)
T KOG0735|consen 743 GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD----STGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDP 818 (952)
T ss_pred cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC----CCCchHHHHHHHHHhhccccccceEEEEEecCCccccCH
Confidence 9999999999999999999999999999999999743 233457899999999999999999999999999999999
Q ss_pred hhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 006535 487 ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (641)
Q Consensus 487 ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~ 558 (641)
||+||||+|+.++.+.|+..+|.+|++..... ..+++++|++.+|..|+||||+||..++..|.+.|..+
T Consensus 819 ALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s--~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 819 ALLRPGRLDKLVYCPLPDEPERLEILQVLSNS--LLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred hhcCCCccceeeeCCCCCcHHHHHHHHHHhhc--cCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999865 46788999999999999999999999999999888653
No 24
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-40 Score=366.50 Aligned_cols=298 Identities=44% Similarity=0.658 Sum_probs=253.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhc---ccccccccCcccc--ccCCCCCCCccccCCCccccccccCChHHHHHHHHH
Q 006535 273 RSGGFLNSALIALFYVAVLAGLLHRF---PVSFSQTAGQVGH--RKTRGPGGAKVSEQGDTITFADVAGVDEAKEELEEI 347 (641)
Q Consensus 273 ~~~~~~~~~l~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vtf~DV~G~ee~K~~L~ei 347 (641)
.+.|+....+..++-.+.+..+.+.. +............ .....+ ..+....+.++|+|++|++++|+.+++.
T Consensus 180 ~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~v~~~diggl~~~k~~l~e~ 257 (494)
T COG0464 180 RTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPS--RGVLFEDEDVTLDDIGGLEEAKEELKEA 257 (494)
T ss_pred hcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcc--cccccCCCCcceehhhcHHHHHHHHHHH
Confidence 45678888888888666655554321 1000000000000 000111 2334566889999999999999999999
Q ss_pred HHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCc
Q 006535 348 VEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPS 426 (641)
Q Consensus 348 v~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~vG~~~~~vr~lF~~A~~~aP~ 426 (641)
+++ ++.++.|...+.++|+|+|||||||||||+||+|+|.+++.+|+.+.++++.++|+|++++.++.+|..|+..+||
T Consensus 258 v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~ 337 (494)
T COG0464 258 IETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPS 337 (494)
T ss_pred HHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCc
Confidence 999 8899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHH
Q 006535 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKI 506 (641)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~ 506 (641)
||||||+|.+...++.. .+....+++++|+.+|++.+...+|+||+|||+|+.+|++++||||||+.++|++||..
T Consensus 338 iiFiDEiDs~~~~r~~~----~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 338 IIFIDEIDSLASGRGPS----EDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred EEEEEchhhhhccCCCC----CchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 99999999999988642 22233789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC-CccccHHHHHHHHHHHh
Q 006535 507 GREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN-KVVVEKIDFIHAVERSI 576 (641)
Q Consensus 507 eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~-~~~It~~d~~eAl~rvi 576 (641)
+|.+|++.++.+....+..++++..+++.|+||+|+||..+|.+|++.+.++. ...|+.+||.+|+.+..
T Consensus 414 ~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~~ 484 (494)
T COG0464 414 ERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREVTLDDFLDALKKIK 484 (494)
T ss_pred HHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhcC
Confidence 99999999998766667789999999999999999999999999999999988 78899999999998843
No 25
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=7.4e-40 Score=358.97 Aligned_cols=252 Identities=42% Similarity=0.688 Sum_probs=233.3
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~ 402 (641)
++.|.++|+||.|++++++++.++++. +.+|+.|..+|..+|+++|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 345789999999999999999999986 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC
Q 006535 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd 482 (641)
..|.|.++..++++|..|....||||||||||.++.++.... .++..+..+++.+||.+|+++....++.||+|||+++
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~-sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d 333 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDAT-SGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 333 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCC-CcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChH
Confidence 999999999999999999999999999999999998775322 2345566788899999999998888999999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 006535 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (641)
Q Consensus 483 ~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~ 562 (641)
.||++++||||||+.|+|++||.++|.+||+.++.+ ..+.+++++..++..++||||+||.++|++|++.|.++++..
T Consensus 334 ~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k--~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~ 411 (438)
T PTZ00361 334 SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK--MTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMK 411 (438)
T ss_pred HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc--CCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999875 466788999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhcc
Q 006535 563 VEKIDFIHAVERSIAG 578 (641)
Q Consensus 563 It~~d~~eAl~rvi~g 578 (641)
|+.+||.+|+++++..
T Consensus 412 Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 412 VTQADFRKAKEKVLYR 427 (438)
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999998653
No 26
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=4.2e-38 Score=349.60 Aligned_cols=243 Identities=28% Similarity=0.446 Sum_probs=214.8
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHh
Q 006535 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (641)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~v 406 (641)
+.++|+||+|++.+|+.|++....+ +..+...|.+.|+|+|||||||||||++|+++|++++.||+.++++.+.+.++
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 5678999999999999998866543 34456779999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCCh
Q 006535 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDP 486 (641)
Q Consensus 407 G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ 486 (641)
|+++.+++++|..|+..+||||||||||.++..++.. +......+++++|+..|+. .+.+|+||+|||+++.||+
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~---~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~ 375 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK---GDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPL 375 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC---CCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCH
Confidence 9999999999999999999999999999998654321 2334567889999999884 3567999999999999999
Q ss_pred hhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHH
Q 006535 487 ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKI 566 (641)
Q Consensus 487 ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~ 566 (641)
+++|+||||+.++++.|+.++|.+||+.++.+.......+.+++.+|..|+||||+||+++|++|+..|..++ ..++.+
T Consensus 376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~~ 454 (489)
T CHL00195 376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTTD 454 (489)
T ss_pred HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCHH
Confidence 9999999999999999999999999999998754333457899999999999999999999999999998766 458999
Q ss_pred HHHHHHHHHhc
Q 006535 567 DFIHAVERSIA 577 (641)
Q Consensus 567 d~~eAl~rvi~ 577 (641)
||..|+.+...
T Consensus 455 dl~~a~~~~~P 465 (489)
T CHL00195 455 DILLALKQFIP 465 (489)
T ss_pred HHHHHHHhcCC
Confidence 99999988765
No 27
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-39 Score=329.33 Aligned_cols=228 Identities=37% Similarity=0.627 Sum_probs=206.5
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhH
Q 006535 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~ 401 (641)
..+.|+|.|+||+|++.+|+.|+|.|-. ++.|+.|.. +..+.+|+||||||||||++||+|+|.|++-.|++++.+++
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL 202 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHH
Confidence 4567899999999999999999998776 778876653 45677999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCC-CCcEEEEEecCC
Q 006535 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIVLGATNR 480 (641)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~-~~~ViVIaATN~ 480 (641)
+++|+|++++.++.+|+.|+.++|+||||||||.++..|++ +.++..+++-.+||.+|.|... +.+|+|++|||-
T Consensus 203 vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e----nEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNi 278 (439)
T KOG0739|consen 203 VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE----NESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNI 278 (439)
T ss_pred HHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC----CchHHHHHHHHHHHHhhhccccCCCceEEEecCCC
Confidence 99999999999999999999999999999999999988864 4567778899999999999854 568999999999
Q ss_pred CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 006535 481 SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (641)
Q Consensus 481 pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~ 558 (641)
|+.||.|++| ||++.|++++|+...|..+++.|+......+. +.|+.+|+++|+||||+||.-+|+.|.+.-.|.
T Consensus 279 Pw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT-~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 279 PWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLT-EQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred chhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccc-hhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 9999999999 99999999999999999999999987665554 448999999999999999999999998877664
No 28
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.9e-37 Score=333.96 Aligned_cols=249 Identities=50% Similarity=0.779 Sum_probs=228.9
Q ss_pred cCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~ 402 (641)
.+.|.++|+||+|++++++++.+.+.. +.+|+.|..+|..+|+|+||+||||||||++|+++|++++.+|+.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 456889999999999999999999876 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC
Q 006535 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd 482 (641)
..+.|.+...++.+|..++...|+||||||+|.++..+.+.. ..+..+..+.+.+++.+++++....++.||+|||+++
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~-~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSG-TSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPD 272 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCC-CCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 999999999999999999999999999999999987765432 2334566778899999999988778899999999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcc
Q 006535 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVV 562 (641)
Q Consensus 483 ~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~ 562 (641)
.+|++++||||||+.++++.|+.++|.+|++.++.+ ..+..++++..++..+.||+|+||.++|++|+..|.++++..
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~--~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~ 350 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRK--MKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDY 350 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhc--CCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999865 456677899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHH
Q 006535 563 VEKIDFIHAVERS 575 (641)
Q Consensus 563 It~~d~~eAl~rv 575 (641)
|+.+||.+|++++
T Consensus 351 i~~~d~~~a~~~~ 363 (364)
T TIGR01242 351 VTMDDFIKAVEKV 363 (364)
T ss_pred cCHHHHHHHHHHh
Confidence 9999999999876
No 29
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-37 Score=325.95 Aligned_cols=228 Identities=41% Similarity=0.630 Sum_probs=208.6
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhC-CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhh
Q 006535 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLG-ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE 400 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg-~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se 400 (641)
....-.++|+||.|+++++++|++.|-. ++.|+.|...+ .++|+|||||||||||||++|+|+|.++|.+|+.++.+.
T Consensus 83 ~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~ 162 (386)
T KOG0737|consen 83 PPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSN 162 (386)
T ss_pred chhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccc
Confidence 3444578999999999999999998887 89999886333 468999999999999999999999999999999999999
Q ss_pred HHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCc--EEEEEec
Q 006535 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA--VIVLGAT 478 (641)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~--ViVIaAT 478 (641)
+.+++.|++++.++.+|..|.+..||||||||+|.+.+.|+ ...++.....-++|+...||+.++.+ |+|+|||
T Consensus 163 lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~----s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgAT 238 (386)
T KOG0737|consen 163 LTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR----STDHEATAMMKNEFMALWDGLSSKDSERVLVLGAT 238 (386)
T ss_pred cchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc----cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCC
Confidence 99999999999999999999999999999999999998884 34566777888999999999987765 9999999
Q ss_pred CCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 006535 479 NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (641)
Q Consensus 479 N~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~ 558 (641)
|+|.+||.|++| |+.++++|+.|+..+|++||+..+++. ++++++|+.++|..|.||||.||.++|..|+....++
T Consensus 239 NRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e--~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 239 NRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKE--KLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred CCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhccc--ccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 999999999999 999999999999999999999999765 5678999999999999999999999999999887663
No 30
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-38 Score=321.48 Aligned_cols=250 Identities=42% Similarity=0.664 Sum_probs=233.9
Q ss_pred CCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006535 325 QGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 325 ~~~~vtf~DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~ 403 (641)
....++|+++.|.-+...++.+.++. +.+|+.|.++|..+|++++||||||||||++|+++|..+|+.|+.+..+++.+
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 34568999999999999999998888 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCC
Q 006535 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (641)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~ 483 (641)
.|.|++++.+|+.|..|+...|||||+||||++++.+. ......+.+..++|-.|+.+|++++....|-+|+|||+|+.
T Consensus 205 kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~-se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdt 283 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRF-SEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDT 283 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEe-ccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccc
Confidence 99999999999999999999999999999999998884 33466788999999999999999999999999999999999
Q ss_pred CChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccc
Q 006535 484 LDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVV 563 (641)
Q Consensus 484 LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~I 563 (641)
|||+|+||||+|+.+++|.|+...|..|++.|.+. +..-.+++.+.+.+..+||.|+|+.+.|.||...|.+..+..+
T Consensus 284 LdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~--i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~v 361 (388)
T KOG0651|consen 284 LDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQP--IDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEV 361 (388)
T ss_pred cchhhcCCccccceeccCCcchhhceeeEeecccc--ccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHH
Confidence 99999999999999999999999999999999854 4555678899999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhc
Q 006535 564 EKIDFIHAVERSIA 577 (641)
Q Consensus 564 t~~d~~eAl~rvi~ 577 (641)
-++|+..++.++..
T Consensus 362 l~Ed~~k~vrk~~~ 375 (388)
T KOG0651|consen 362 LHEDFMKLVRKQAD 375 (388)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999987643
No 31
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=2.6e-35 Score=327.54 Aligned_cols=255 Identities=36% Similarity=0.590 Sum_probs=209.0
Q ss_pred cccCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC--------
Q 006535 322 VSEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------- 392 (641)
Q Consensus 322 ~~~~~~~vtf~DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p-------- 392 (641)
+.++.|.++|+||+|+++.++++++.+.. +.+|+.|...|.++|+|+|||||||||||++|+++|++++.+
T Consensus 172 ~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~ 251 (512)
T TIGR03689 172 VLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDK 251 (512)
T ss_pred eeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCc
Confidence 34667899999999999999999998877 889999999999999999999999999999999999998654
Q ss_pred --eEEeehhhHHHHHhhcchHHHHHHHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC
Q 006535 393 --FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 466 (641)
Q Consensus 393 --fi~vs~se~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~ 466 (641)
|+.+.++++.++|+|+++..++.+|+.|+.. .||||||||+|.++..++.+ ..++....++++||.+||++
T Consensus 252 ~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~---~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 252 SYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG---VSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred eeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC---ccchHHHHHHHHHHHHhccc
Confidence 6778888999999999999999999998764 69999999999999877532 23444567889999999999
Q ss_pred CCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCC---------CCHHHHHH---
Q 006535 467 DSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD---------IDLGDIAS--- 534 (641)
Q Consensus 467 ~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~d---------vdl~~LA~--- 534 (641)
....+++||+|||+++.||+|++||||||..|+|++|+.++|.+||+.++.. .+++.++ .++..+++
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~~~l~~~~g~~~a~~~al~~~av 407 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLDADLAEFDGDREATAAALIQRAV 407 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCchHHHHHhcCCCHHHHHHHHHHHH
Confidence 9888999999999999999999999999999999999999999999999864 2344111 11222211
Q ss_pred --------------------------hCCCCCHHHHHHHHHHHHHHHHhc----CCccccHHHHHHHHHHHhcchh
Q 006535 535 --------------------------MTTGFTGADLANLVNEAALLAGRL----NKVVVEKIDFIHAVERSIAGIE 580 (641)
Q Consensus 535 --------------------------~T~GfSgaDL~~Lv~eAal~A~r~----~~~~It~~d~~eAl~rvi~g~~ 580 (641)
.++.+||++|+++|.+|...|..+ +...|+.+|+..|+.+-...-+
T Consensus 408 ~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~ 483 (512)
T TIGR03689 408 DHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESE 483 (512)
T ss_pred HHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccc
Confidence 245567777777777777776654 3456777777777776655433
No 32
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-33 Score=305.26 Aligned_cols=252 Identities=34% Similarity=0.557 Sum_probs=216.0
Q ss_pred CCCcccccc--ccCChHHHHHHHH--HHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC-CCeEEeehh
Q 006535 325 QGDTITFAD--VAGVDEAKEELEE--IVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-VPFISCSAS 399 (641)
Q Consensus 325 ~~~~vtf~D--V~G~ee~K~~L~e--iv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg-~pfi~vs~s 399 (641)
-.|...|++ |.|++..-..+-+ ++..+-.|+.-.++|...-+|+|||||||||||++||.+...++ .+--.+++.
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGP 291 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGP 291 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcH
Confidence 346677877 5688877665532 44457788899999999999999999999999999999999886 345668999
Q ss_pred hHHHHHhhcchHHHHHHHHHHHhcC--------CceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCc
Q 006535 400 EFVELYVGMGASRVRDLFARAKKEA--------PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA 471 (641)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~~~a--------P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ 471 (641)
+.+++|+|++++.+|++|..|.... =-||++||||+++++|+.. .++.....+++||||..|||.+.-.+
T Consensus 292 eIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~--~g~TGVhD~VVNQLLsKmDGVeqLNN 369 (744)
T KOG0741|consen 292 EILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSM--AGSTGVHDTVVNQLLSKMDGVEQLNN 369 (744)
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCC--CCCCCccHHHHHHHHHhcccHHhhhc
Confidence 9999999999999999999985421 1299999999999999754 23445567899999999999999999
Q ss_pred EEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC--CCCCCCCCCHHHHHHhCCCCCHHHHHHHHH
Q 006535 472 VIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGDIASMTTGFTGADLANLVN 549 (641)
Q Consensus 472 ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~--~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~ 549 (641)
|+||+-|||.|.+|+||+|||||..++++.+||+..|.+|++.|.++. +-.+.+|||+.+||.+|-.||||+|+.+++
T Consensus 370 ILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVk 449 (744)
T KOG0741|consen 370 ILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVK 449 (744)
T ss_pred EEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHH
Confidence 999999999999999999999999999999999999999999998652 335789999999999999999999999999
Q ss_pred HHHHHHHhc---------------CCccccHHHHHHHHHHHhcc
Q 006535 550 EAALLAGRL---------------NKVVVEKIDFIHAVERSIAG 578 (641)
Q Consensus 550 eAal~A~r~---------------~~~~It~~d~~eAl~rvi~g 578 (641)
.|...|..+ ..-.|+.+||..|++++...
T Consensus 450 sA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPA 493 (744)
T KOG0741|consen 450 SAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPA 493 (744)
T ss_pred HHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcc
Confidence 999888654 13468999999999987653
No 33
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-33 Score=324.49 Aligned_cols=250 Identities=40% Similarity=0.637 Sum_probs=225.2
Q ss_pred CCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEeehh
Q 006535 326 GDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSAS 399 (641)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-----g~pfi~vs~s 399 (641)
...++|++|+|++.++.+|+|+|.. |..|+.|..++..+|+|||++||||||||+.|+|+|..+ .+-|+.-.++
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 3578999999999999999999998 999999999999999999999999999999999999987 4678888899
Q ss_pred hHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006535 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN 479 (641)
+..++|+|+.+..++.+|+.|+...|+|||+||||-|++.|.. ...+....++..||..|||+.+.+.|+||+|||
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSs----kqEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSS----KQEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccc----hHHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 9999999999999999999999999999999999999998853 245566788999999999999999999999999
Q ss_pred CCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC
Q 006535 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (641)
Q Consensus 480 ~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~ 559 (641)
+|+.+||||+||||||+.+++++|+.+.|.+|+..|.++..-++.. .-+..+|+.|.||-|+||+.+|.+|++.+.++.
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~-~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~ 493 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISR-ELLLWLAEETSGYGGADLKALCTEAALIALRRS 493 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCH-HHHHHHHHhccccchHHHHHHHHHHhhhhhccc
Confidence 9999999999999999999999999999999999998876544433 357889999999999999999999999998752
Q ss_pred ----------------CccccHHHHHHHHHHHhcchh
Q 006535 560 ----------------KVVVEKIDFIHAVERSIAGIE 580 (641)
Q Consensus 560 ----------------~~~It~~d~~eAl~rvi~g~~ 580 (641)
...|...||..|+.+......
T Consensus 494 ~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~ 530 (1080)
T KOG0732|consen 494 FPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSR 530 (1080)
T ss_pred cCeeecccccccccchhhhhhhHhhhhhhhccCCCCC
Confidence 234777899999888766543
No 34
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-32 Score=304.52 Aligned_cols=237 Identities=44% Similarity=0.662 Sum_probs=220.3
Q ss_pred CccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHH
Q 006535 327 DTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (641)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~ 405 (641)
+.++ +++.|.......+++++.. +.+|..|...|.++|+|+|+|||||||||.+++++|++.++.++.+++++++..+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 6677 8999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHhcC-CceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCC
Q 006535 406 VGMGASRVRDLFARAKKEA-PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (641)
Q Consensus 406 vG~~~~~vr~lF~~A~~~a-P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~L 484 (641)
.|++++.+|..|++|.+.+ |++|||||||++++++... .....++..+|++.||+..+..+++||++||+|+.|
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~-----~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sl 333 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGA-----DDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSL 333 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCccccc-----chHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcccc
Confidence 9999999999999999999 9999999999999988642 224678999999999999989999999999999999
Q ss_pred ChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccc
Q 006535 485 DPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVE 564 (641)
Q Consensus 485 D~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It 564 (641)
|++++| ||||+.+.+..|+..+|.+|++.+.++. ++.+++++..+|..|.||.|+||..+|.+|.+.+.++ +
T Consensus 334 d~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~--~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~ 405 (693)
T KOG0730|consen 334 DPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKM--NLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----T 405 (693)
T ss_pred Chhhhc-CCCcceeeecCCCchhHHHHHHHHHHhc--CCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----h
Confidence 999999 9999999999999999999999999775 4447789999999999999999999999999999887 7
Q ss_pred HHHHHHHHHHHhc
Q 006535 565 KIDFIHAVERSIA 577 (641)
Q Consensus 565 ~~d~~eAl~rvi~ 577 (641)
+++|..|...+..
T Consensus 406 ~~~~~~A~~~i~p 418 (693)
T KOG0730|consen 406 LEIFQEALMGIRP 418 (693)
T ss_pred HHHHHHHHhcCCc
Confidence 8888888776543
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=5.2e-32 Score=315.86 Aligned_cols=246 Identities=50% Similarity=0.800 Sum_probs=221.6
Q ss_pred CCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH
Q 006535 326 GDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (641)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~ 404 (641)
.+.++|+||+|++++++.+.+++.. +.+|+.|..+|..+|+++|||||||||||+||+++|++++.+|+.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4679999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCC
Q 006535 405 YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL 484 (641)
Q Consensus 405 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~L 484 (641)
+.|.++..++.+|+.|....|+||||||||.+..+++.. ..+...+++++|+..|+++.....++||++||+++.|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~----~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~l 327 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV----TGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDAL 327 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC----cchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhc
Confidence 999999999999999999999999999999999877532 2233357889999999999888899999999999999
Q ss_pred ChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC-----
Q 006535 485 DPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN----- 559 (641)
Q Consensus 485 D~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~----- 559 (641)
|++++|+|||++.+.++.|+.++|.+||+.+.+. .++.++++++.+++.+.||+++|+..++++|+..+.++.
T Consensus 328 d~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~--~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~ 405 (733)
T TIGR01243 328 DPALRRPGRFDREIVIRVPDKRARKEILKVHTRN--MPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGK 405 (733)
T ss_pred CHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC--CCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999988754 566778899999999999999999999999998876541
Q ss_pred --------------CccccHHHHHHHHHHHhc
Q 006535 560 --------------KVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 560 --------------~~~It~~d~~eAl~rvi~ 577 (641)
...++.+||..|+..+..
T Consensus 406 ~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~p 437 (733)
T TIGR01243 406 INFEAEEIPAEVLKELKVTMKDFMEALKMVEP 437 (733)
T ss_pred cccccccccchhcccccccHHHHHHHHhhccc
Confidence 135788999999886553
No 36
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=1.1e-31 Score=284.39 Aligned_cols=262 Identities=17% Similarity=0.169 Sum_probs=194.3
Q ss_pred Cccccccc-cCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHH
Q 006535 327 DTITFADV-AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (641)
Q Consensus 327 ~~vtf~DV-~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~ 405 (641)
...+|+++ .|+.-.+.-+.+++..+... .....|.++|++++||||||||||++|+++|+++|++|+.++++++.++|
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn-~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKN-FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhh-hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 34567777 66666666665555332110 11236789999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHh-----cCCceEEEcchhhhhhhcCCcccccchhHHHHHH-HHHHhhhcCC------------C
Q 006535 406 VGMGASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL-NQLLTEMDGF------------D 467 (641)
Q Consensus 406 vG~~~~~vr~lF~~A~~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L-nqLL~emd~~------------~ 467 (641)
+|++++.+|++|..|.. .+||||||||||++++.++.. ......+.+ .+|+++||+. .
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~----~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~ 264 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT----QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKE 264 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC----CcchHHHHHHHHHHHHhcCCccccccccccccc
Confidence 99999999999999975 469999999999999887532 222334444 7899888753 3
Q ss_pred CCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCC----CCHHH
Q 006535 468 SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG----FTGAD 543 (641)
Q Consensus 468 ~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~G----fSgaD 543 (641)
...+|+||+|||+|+.||++|+||||||+.+ ..|+.++|.+||+.++++.++ + ..++..|+..++| |.|+-
T Consensus 265 ~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l--~-~~dv~~Lv~~f~gq~~Df~GAl 339 (413)
T PLN00020 265 EIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGV--S-REDVVKLVDTFPGQPLDFFGAL 339 (413)
T ss_pred cCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCC--C-HHHHHHHHHcCCCCCchhhhHH
Confidence 4568999999999999999999999999864 589999999999999987544 3 4678889888877 56676
Q ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcchhhhhccCChhHHHHHHHHHhHHHHHHh
Q 006535 544 LANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGT 606 (641)
Q Consensus 544 L~~Lv~eAal~A~r~~~~~It~~d~~eAl~rvi~g~~~~~~~l~~~ek~~va~hEaghAlv~~ 606 (641)
-..+.+++...-+.+- ..+.+- ++.+...+ ....+..-...+-..-|+||.++..
T Consensus 340 rar~yd~~v~~~i~~~----g~~~~~---~~l~~~~~-~~p~f~~~~~t~~~l~~~g~~l~~e 394 (413)
T PLN00020 340 RARVYDDEVRKWIAEV----GVENLG---KKLVNSKK-GPPTFEPPKMTLEKLLEYGNMLVRE 394 (413)
T ss_pred HHHHHHHHHHHHHHHh----hHHHHH---HHHhcCCC-CCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 6777777665443321 112221 22222222 2334444455567778899999864
No 37
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.7e-31 Score=285.93 Aligned_cols=248 Identities=36% Similarity=0.551 Sum_probs=212.7
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhH
Q 006535 323 SEQGDTITFADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~ 401 (641)
....+.+.|+|++|++.+|+.+.+++-+ +..|..|..+ ..+++++||.||||||||+|++|||.|++..|+.++++.+
T Consensus 144 ~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassL 222 (428)
T KOG0740|consen 144 GDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSL 222 (428)
T ss_pred hccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHh
Confidence 3455779999999999999999999999 5568877654 4567899999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCC--CCcEEEEEecC
Q 006535 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS--NSAVIVLGATN 479 (641)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~--~~~ViVIaATN 479 (641)
.++|+|++++.++.+|.-|+...|+|+||||+|.+..+|.+ ..++...+...++|..+++... .++|+||+|||
T Consensus 223 tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~----~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN 298 (428)
T KOG0740|consen 223 TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD----NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATN 298 (428)
T ss_pred hhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC----cccccchhhhhHHHhhhccccCCCCCeEEEEecCC
Confidence 99999999999999999999999999999999999998854 3455556777888888887643 45899999999
Q ss_pred CCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC
Q 006535 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN 559 (641)
Q Consensus 480 ~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~ 559 (641)
+|+.+|.+++| ||.+.+++++|+.+.|..+|+..+.+.+..+ .+.+++.|++.|+||++.||.++|.+|++.-.+..
T Consensus 299 ~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l-~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~ 375 (428)
T KOG0740|consen 299 RPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGL-SDLDISLLAKVTEGYSGSDITALCKEAAMGPLREL 375 (428)
T ss_pred CchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhc
Confidence 99999999999 9999999999999999999999998764444 34589999999999999999999999986544332
Q ss_pred -------------CccccHHHHHHHHHHHhcc
Q 006535 560 -------------KVVVEKIDFIHAVERSIAG 578 (641)
Q Consensus 560 -------------~~~It~~d~~eAl~rvi~g 578 (641)
...|+..||..|+..+...
T Consensus 376 ~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~ 407 (428)
T KOG0740|consen 376 GGTTDLEFIDADKIRPITYPDFKNAFKNIKPS 407 (428)
T ss_pred ccchhhhhcchhccCCCCcchHHHHHHhhccc
Confidence 2345667888887766543
No 38
>CHL00181 cbbX CbbX; Provisional
Probab=99.89 E-value=4.9e-22 Score=208.30 Aligned_cols=212 Identities=20% Similarity=0.292 Sum_probs=165.3
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhhCCCCC---CeeEEEcCCCCcHHHHHHHHHHhc-------CCCeEEeehhh
Q 006535 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPP---RGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSASE 400 (641)
Q Consensus 331 f~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~p---kgVLL~GPPGTGKT~LAkAlA~el-------g~pfi~vs~se 400 (641)
+++++|++++|+++++++.++..++.+...|...+ .++||+||||||||++|+++|.++ ..+++.+++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 34899999999999999998777777777787554 358999999999999999999875 24799999999
Q ss_pred HHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCC
Q 006535 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (641)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~ 480 (641)
+...+.|.++..++.+|+.|. ++||||||+|.+...++ ..+...+.++.|+..|+... .+++||++++.
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~------~~~~~~e~~~~L~~~me~~~--~~~~vI~ag~~ 170 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN------ERDYGSEAIEILLQVMENQR--DDLVVIFAGYK 170 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC------ccchHHHHHHHHHHHHhcCC--CCEEEEEeCCc
Confidence 999999998888888888764 46999999999965432 12233566778888887543 45788888764
Q ss_pred CC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh------CCCCC-HHHHHHHH
Q 006535 481 SD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM------TTGFT-GADLANLV 548 (641)
Q Consensus 481 pd-----~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~------T~GfS-gaDL~~Lv 548 (641)
.. .++|++.+ ||+..|.|++|+.+++.+|++.++.+.+..++++. ...+... .+.|. ++++++++
T Consensus 171 ~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~v 247 (287)
T CHL00181 171 DRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNAL 247 (287)
T ss_pred HHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 32 34699998 99999999999999999999999988777776653 3333321 23344 89999999
Q ss_pred HHHHHHHH
Q 006535 549 NEAALLAG 556 (641)
Q Consensus 549 ~eAal~A~ 556 (641)
++|...-.
T Consensus 248 e~~~~~~~ 255 (287)
T CHL00181 248 DRARMRQA 255 (287)
T ss_pred HHHHHHHH
Confidence 99876543
No 39
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.89 E-value=7e-22 Score=203.91 Aligned_cols=212 Identities=21% Similarity=0.321 Sum_probs=162.8
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCC---CCeeEEEcCCCCcHHHHHHHHHHhc-------CCCeEEeehh
Q 006535 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARP---PRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSAS 399 (641)
Q Consensus 330 tf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~---pkgVLL~GPPGTGKT~LAkAlA~el-------g~pfi~vs~s 399 (641)
.+++++|++++|+++++++.+..........|... +.++||+||||||||++|+++|+++ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 46789999999999999999976655555566653 3568999999999999999999864 3478999999
Q ss_pred hHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006535 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN 479 (641)
++...++|.....++++|+.+. ++||||||+|.|.... ..+.....++.|+..|+... ..+++|+++.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~-------~~~~~~~~i~~Ll~~~e~~~--~~~~vila~~ 151 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG-------EKDFGKEAIDTLVKGMEDNR--NEFVLILAGY 151 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC-------ccchHHHHHHHHHHHHhccC--CCEEEEecCC
Confidence 9999999999999999998874 4699999999996421 11223456788888888653 4466666654
Q ss_pred CCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh---------CCCCCHHHHH
Q 006535 480 RSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM---------TTGFTGADLA 545 (641)
Q Consensus 480 ~pd-----~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~---------T~GfSgaDL~ 545 (641)
..+ .++|++.+ ||+..+.++.++.+++.+|++.++...+..+++++ +..++.. ...-+++.+.
T Consensus 152 ~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a-~~~l~~~~~~~~~~~~~~~gn~R~~~ 228 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEA-KWKLREHLYKVDQLSSREFSNARYVR 228 (261)
T ss_pred cchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHH-HHHHHHHHHHHHhccCCCCchHHHHH
Confidence 332 46889988 99989999999999999999999987766676654 4444321 1123678889
Q ss_pred HHHHHHHHHHH
Q 006535 546 NLVNEAALLAG 556 (641)
Q Consensus 546 ~Lv~eAal~A~ 556 (641)
++++.|.....
T Consensus 229 n~~e~a~~~~~ 239 (261)
T TIGR02881 229 NIIEKAIRRQA 239 (261)
T ss_pred HHHHHHHHHHH
Confidence 99988776553
No 40
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.4e-22 Score=208.96 Aligned_cols=239 Identities=26% Similarity=0.368 Sum_probs=185.2
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHh
Q 006535 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (641)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~v 406 (641)
+.-.|++|+-....+..++++...-.|-.. ...+-++||+|||||||||++|+-+|...|..+-.+.+.+.... -
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-G 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-c
Confidence 344599999999999999998876555433 34566889999999999999999999999999998888876543 2
Q ss_pred hcchHHHHHHHHHHHhcCCc-eEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCC
Q 006535 407 GMGASRVRDLFARAKKEAPS-IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (641)
Q Consensus 407 G~~~~~vr~lF~~A~~~aP~-ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD 485 (641)
.++...+.++|+.+++.... +|||||.|++...|.. ...++.....||.||-.-. +....|+++.+||+|..+|
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk---tymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlD 499 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK---TYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLD 499 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch---hhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchh
Confidence 34566789999999876544 8899999999988764 3356677888999886533 3345788999999999999
Q ss_pred hhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCC----------------------CCCCCC---CCHHHHHHhCCCCC
Q 006535 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKE----------------------LPLAKD---IDLGDIASMTTGFT 540 (641)
Q Consensus 486 ~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~----------------------l~l~~d---vdl~~LA~~T~GfS 540 (641)
.++-. |||.+|+|++|..++|..+|..++.+.- +.+..+ -.+.+.|..|+|||
T Consensus 500 sAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfS 577 (630)
T KOG0742|consen 500 SAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFS 577 (630)
T ss_pred HHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCc
Confidence 99998 9999999999999999999999887521 111111 12567789999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhc
Q 006535 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 541 gaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~rvi~ 577 (641)
|++|..|+---...++-+....++...|++.++..+.
T Consensus 578 GREiakLva~vQAavYgsedcvLd~~lf~e~v~ykv~ 614 (630)
T KOG0742|consen 578 GREIAKLVASVQAAVYGSEDCVLDEALFDERVDYKVQ 614 (630)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHH
Confidence 9999999876555555555666777777666654443
No 41
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.88 E-value=1.2e-21 Score=205.07 Aligned_cols=211 Identities=20% Similarity=0.303 Sum_probs=166.0
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCC---CCeeEEEcCCCCcHHHHHHHHHHhcC-------CCeEEeehhhHH
Q 006535 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARP---PRGVLLVGLPGTGKTLLAKAVAGEAE-------VPFISCSASEFV 402 (641)
Q Consensus 333 DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~---pkgVLL~GPPGTGKT~LAkAlA~elg-------~pfi~vs~se~~ 402 (641)
+++|++++|+++.+++.++..++.+.+.|... ..++||+||||||||++|+++|..+. .+|+.+++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 69999999999999999988888888888764 34899999999999999999998762 379999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC-
Q 006535 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS- 481 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~p- 481 (641)
..+.|.++..++++|++|. +++|||||+|.|.+.++. .+......+.|+..|+.. ..+++||++++..
T Consensus 103 ~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~------~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE------RDYGQEAIEILLQVMENQ--RDDLVVILAGYKDR 171 (284)
T ss_pred HhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc------cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHH
Confidence 9999998888888998874 369999999998643321 122345667888888743 3567888887643
Q ss_pred -C---CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh-------CCCCCHHHHHHHHHH
Q 006535 482 -D---VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM-------TTGFTGADLANLVNE 550 (641)
Q Consensus 482 -d---~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~-------T~GfSgaDL~~Lv~e 550 (641)
+ .++|++.+ ||+..|.|++++.+++.+|++.++.+.+..+.++. +..++.+ ..--++++++++++.
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a-~~~L~~~l~~~~~~~~~GN~R~lrn~ve~ 248 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEA-EEAFADYIALRRTQPHFANARSIRNAIDR 248 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHH-HHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 2 35899999 99999999999999999999999988665555543 4444443 222368999999999
Q ss_pred HHHHHHh
Q 006535 551 AALLAGR 557 (641)
Q Consensus 551 Aal~A~r 557 (641)
|......
T Consensus 249 ~~~~~~~ 255 (284)
T TIGR02880 249 ARLRQAN 255 (284)
T ss_pred HHHHHHH
Confidence 8765543
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.87 E-value=1.2e-21 Score=178.24 Aligned_cols=130 Identities=45% Similarity=0.671 Sum_probs=117.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcC-CceEEEcchhhhhhhcCCcccc
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEA-PSIIFIDEIDAVAKSRDGRFRI 446 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~vG~~~~~vr~lF~~A~~~a-P~ILfIDEIDaL~~~r~~~~~~ 446 (641)
|||+||||||||++|+.+|+.++.+++.++++++.+.+.+...+.++++|.+++... ||||||||+|.+....+ .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~----~ 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ----P 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS----T
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc----c
Confidence 699999999999999999999999999999999998888999999999999999888 99999999999988762 2
Q ss_pred cchhHHHHHHHHHHhhhcCCCCC-CcEEEEEecCCCCCCChhhhCCCCcceEEEecC
Q 006535 447 VSNDEREQTLNQLLTEMDGFDSN-SAVIVLGATNRSDVLDPALRRPGRFDRVVMVET 502 (641)
Q Consensus 447 ~~~~e~~~~LnqLL~emd~~~~~-~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~ 502 (641)
.........+++|+..++..... .+++||++||.++.++++++| +||+..+++++
T Consensus 77 ~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 77 SSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 35566778889999999988765 569999999999999999998 89999999864
No 43
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.5e-21 Score=208.90 Aligned_cols=207 Identities=29% Similarity=0.381 Sum_probs=161.3
Q ss_pred ccccccccCChHHHHHHH-HHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHh
Q 006535 328 TITFADVAGVDEAKEELE-EIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (641)
Q Consensus 328 ~vtf~DV~G~ee~K~~L~-eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~v 406 (641)
+.+|+.|+-..+.|+++. ++.+|.+..+-|.+.|....+|.|||||||||||+++.|+|++++..++.++.++..
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~---- 272 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK---- 272 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc----
Confidence 378999999999998885 577789999999999999999999999999999999999999999999888775532
Q ss_pred hcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccc--cch-hHHHHHHHHHHhhhcCCCCCC--cEEEEEecCCC
Q 006535 407 GMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI--VSN-DEREQTLNQLLTEMDGFDSNS--AVIVLGATNRS 481 (641)
Q Consensus 407 G~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~--~~~-~e~~~~LnqLL~emd~~~~~~--~ViVIaATN~p 481 (641)
.... ++.++..+.. .+||+|+|||+-..-+...... ... ....-++..||..+||+-+.. --|||.|||.+
T Consensus 273 -~n~d-Lr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 273 -LDSD-LRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred -CcHH-HHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 2223 7777765543 3699999999975433221110 001 123468899999999997766 57888999999
Q ss_pred CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCC-CCCCCCCCHHHHHHhCCC--CCHHHHHHH
Q 006535 482 DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKE-LPLAKDIDLGDIASMTTG--FTGADLANL 547 (641)
Q Consensus 482 d~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~-l~l~~dvdl~~LA~~T~G--fSgaDL~~L 547 (641)
+.|||||+||||+|.+|++..-+..+-..+++.++.-.. .++ ..++.+...+ .||||+...
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L-----~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRL-----FDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcch-----hHHHHHHhhcCccCHHHHHHH
Confidence 999999999999999999999999999999999985432 222 3444443333 589998543
No 44
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.83 E-value=2.8e-19 Score=187.53 Aligned_cols=211 Identities=23% Similarity=0.321 Sum_probs=158.7
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcc
Q 006535 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMG 409 (641)
Q Consensus 330 tf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~vG~~ 409 (641)
+|+|++|+++++++|..++...... ...+.+++|+||||||||+||+++|++++.++..+.+.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 6999999999999998888643321 234667999999999999999999999998887766542211
Q ss_pred hHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC----------------CCCcEE
Q 006535 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----------------SNSAVI 473 (641)
Q Consensus 410 ~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~----------------~~~~Vi 473 (641)
...+...+... ..+.+|||||+|.+....+ +.|+..|+... ...++.
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~~---------------e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPAVE---------------ELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHHHH---------------HHhhHHHhhhheeeeeccCccccceeecCCCeE
Confidence 11222333222 3467999999999864321 11222222111 123478
Q ss_pred EEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q 006535 474 VLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (641)
Q Consensus 474 VIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal 553 (641)
+|++||++..+++++++ ||...+.+++|+.+++.++++..+...++.++++ .++.+++.+.| .++.+.++++.+..
T Consensus 132 li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~-al~~ia~~~~G-~pR~~~~ll~~~~~ 207 (305)
T TIGR00635 132 LVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPE-AALEIARRSRG-TPRIANRLLRRVRD 207 (305)
T ss_pred EEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHH-HHHHHHHHhCC-CcchHHHHHHHHHH
Confidence 99999999999999988 9988899999999999999999988777766655 37889999888 56888999998887
Q ss_pred HHHhcCCccccHHHHHHHHHH
Q 006535 554 LAGRLNKVVVEKIDFIHAVER 574 (641)
Q Consensus 554 ~A~r~~~~~It~~d~~eAl~r 574 (641)
.|...+...|+.+++.+++..
T Consensus 208 ~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 208 FAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHHHcCCCCcCHHHHHHHHHH
Confidence 776666677999999999987
No 45
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.83 E-value=1.7e-19 Score=192.15 Aligned_cols=219 Identities=23% Similarity=0.259 Sum_probs=165.8
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHH
Q 006535 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (641)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~ 405 (641)
..+.+|+|++|+++.++.|..++...+.+ ..++.++||+||||||||++|+++|++++..+..+++..+.
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~--- 88 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE--- 88 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc---
Confidence 45668999999999999999888654322 24567899999999999999999999999998877665331
Q ss_pred hhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhh------cC-CC------CCCcE
Q 006535 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM------DG-FD------SNSAV 472 (641)
Q Consensus 406 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~em------d~-~~------~~~~V 472 (641)
....+..++... ..++||||||||.+.... .+.+..++... +. .. .-.++
T Consensus 89 ---~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~------------~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~ 151 (328)
T PRK00080 89 ---KPGDLAAILTNL--EEGDVLFIDEIHRLSPVV------------EEILYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred ---ChHHHHHHHHhc--ccCCEEEEecHhhcchHH------------HHHHHHHHHhcceeeeeccCccccceeecCCCc
Confidence 122334444432 346799999999985322 11222222211 10 00 11347
Q ss_pred EEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHH
Q 006535 473 IVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAA 552 (641)
Q Consensus 473 iVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAa 552 (641)
.+|++||++..++++|++ ||+..+.+++|+.+++.+|++..+...++.+++++ +..|+..+.| +++.+.++++.+.
T Consensus 152 ~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~-~~~ia~~~~G-~pR~a~~~l~~~~ 227 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEG-ALEIARRSRG-TPRIANRLLRRVR 227 (328)
T ss_pred eEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHH-HHHHHHHcCC-CchHHHHHHHHHH
Confidence 889999999999999988 99989999999999999999999988888877664 8889999987 6699999999988
Q ss_pred HHHHhcCCccccHHHHHHHHHHH
Q 006535 553 LLAGRLNKVVVEKIDFIHAVERS 575 (641)
Q Consensus 553 l~A~r~~~~~It~~d~~eAl~rv 575 (641)
..|...+...|+.+++..+++..
T Consensus 228 ~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 228 DFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHh
Confidence 88877666789999999998653
No 46
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.82 E-value=6.8e-20 Score=184.03 Aligned_cols=197 Identities=25% Similarity=0.353 Sum_probs=135.4
Q ss_pred cccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhH
Q 006535 322 VSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (641)
Q Consensus 322 ~~~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~ 401 (641)
..+...+.+|+|++|++++++.++-++...+.. .....++|||||||+|||+||+.+|++++++|...++..+
T Consensus 14 l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i 86 (233)
T PF05496_consen 14 LAERLRPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAI 86 (233)
T ss_dssp HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC-
T ss_pred hHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhh
Confidence 344556789999999999999998888764321 2344579999999999999999999999999999887543
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC--------C-----
Q 006535 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------S----- 468 (641)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~--------~----- 468 (641)
. ....+..++.... ...||||||||.+.+..+ ..|+..|+.+. .
T Consensus 87 ~------k~~dl~~il~~l~--~~~ILFIDEIHRlnk~~q---------------e~LlpamEd~~idiiiG~g~~ar~~ 143 (233)
T PF05496_consen 87 E------KAGDLAAILTNLK--EGDILFIDEIHRLNKAQQ---------------EILLPAMEDGKIDIIIGKGPNARSI 143 (233)
T ss_dssp -------SCHHHHHHHHT----TT-EEEECTCCC--HHHH---------------HHHHHHHHCSEEEEEBSSSSS-BEE
T ss_pred h------hHHHHHHHHHhcC--CCcEEEEechhhccHHHH---------------HHHHHHhccCeEEEEecccccccee
Confidence 1 1223344444332 346999999999975543 34555565431 1
Q ss_pred ---CCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHH
Q 006535 469 ---NSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLA 545 (641)
Q Consensus 469 ---~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~ 545 (641)
-.++.+|+||++...|.+.|+. ||.....+..++.++..+|++......+++++++ ...+||.++.| +|+-..
T Consensus 144 ~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~-~~~~Ia~rsrG-tPRiAn 219 (233)
T PF05496_consen 144 RINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDED-AAEEIARRSRG-TPRIAN 219 (233)
T ss_dssp EEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HH-HHHHHHHCTTT-SHHHHH
T ss_pred eccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHH-HHHHHHHhcCC-ChHHHH
Confidence 1358899999999999999998 9998889999999999999999888777777766 37889999988 888888
Q ss_pred HHHHHHH
Q 006535 546 NLVNEAA 552 (641)
Q Consensus 546 ~Lv~eAa 552 (641)
++++++.
T Consensus 220 rll~rvr 226 (233)
T PF05496_consen 220 RLLRRVR 226 (233)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 8877654
No 47
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.9e-19 Score=186.67 Aligned_cols=241 Identities=23% Similarity=0.290 Sum_probs=177.9
Q ss_pred cccccCChHHHHHHHHHHHH-hcChhHHhhhC-CCCCCeeEEEcCCCCcHHHHHHHHHHhcC---------CCeEEeehh
Q 006535 331 FADVAGVDEAKEELEEIVEF-LRSPDKYIRLG-ARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSAS 399 (641)
Q Consensus 331 f~DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg-~~~pkgVLL~GPPGTGKT~LAkAlA~elg---------~pfi~vs~s 399 (641)
|+.++=-...|+.|...+.. +...++-..-+ ....+-+||+||||||||+|+||+|+.+. ..++.+++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 66677777788877665544 32222211100 22346699999999999999999999873 467899999
Q ss_pred hHHHHHhhcchHHHHHHHHHHHhcC---Cc--eEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEE
Q 006535 400 EFVELYVGMGASRVRDLFARAKKEA---PS--IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (641)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~~~a---P~--ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViV 474 (641)
.+.++|.+++.+.+..+|++..... .+ .++|||++.|+..|.+..........-+++|.+|++||.+....+|++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 9999999999999999999886532 22 556999999998885443333444556899999999999999999999
Q ss_pred EEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc---CCCCCCC-------------CCCHHHHHH-hCC
Q 006535 475 LGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK---KELPLAK-------------DIDLGDIAS-MTT 537 (641)
Q Consensus 475 IaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~---~~l~l~~-------------dvdl~~LA~-~T~ 537 (641)
++|+|-.+.||.|+.. |-|-+.++++|+...+.+|++..+.. .++-+.. +.....++. .+.
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~ 378 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTV 378 (423)
T ss_pred EeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhc
Confidence 9999999999999999 99999999999999999999987754 1221111 111223333 358
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHH
Q 006535 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (641)
Q Consensus 538 GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~rv 575 (641)
|+||+-|+.+=--|...- -....|+.++|..|+-..
T Consensus 379 gLSGRtlrkLP~Laha~y--~~~~~v~~~~fl~al~ea 414 (423)
T KOG0744|consen 379 GLSGRTLRKLPLLAHAEY--FRTFTVDLSNFLLALLEA 414 (423)
T ss_pred CCccchHhhhhHHHHHhc--cCCCccChHHHHHHHHHH
Confidence 999999988865544222 233578888888877554
No 48
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.7e-18 Score=184.46 Aligned_cols=210 Identities=30% Similarity=0.421 Sum_probs=150.7
Q ss_pred ccCCCccccccccCChHHHH---HHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehh
Q 006535 323 SEQGDTITFADVAGVDEAKE---ELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~---~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~s 399 (641)
.....+-+++|++|+++... -|.++++. ....+++||||||||||+||+.||+..+.+|..++.
T Consensus 15 A~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA- 81 (436)
T COG2256 15 AERLRPKSLDEVVGQEHLLGEGKPLRRAVEA------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA- 81 (436)
T ss_pred HHHhCCCCHHHhcChHhhhCCCchHHHHHhc------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecc-
Confidence 44456778999999998763 34444432 233469999999999999999999999999999987
Q ss_pred hHHHHHhhcchHHHHHHHHHHHhcC----CceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEE
Q 006535 400 EFVELYVGMGASRVRDLFARAKKEA----PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVL 475 (641)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~~~a----P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVI 475 (641)
+-.+.+.++++++.|+... ..||||||||.+.+.+| ..||-.|+ +..|++|
T Consensus 82 ------v~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ---------------D~lLp~vE----~G~iilI 136 (436)
T COG2256 82 ------VTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ---------------DALLPHVE----NGTIILI 136 (436)
T ss_pred ------ccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh---------------hhhhhhhc----CCeEEEE
Confidence 4456788999999996532 46999999999987665 45666666 6678899
Q ss_pred Eec--CCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc--CCCC-----CCCCCCHHHHHHhCCCCCHHHHHH
Q 006535 476 GAT--NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK--KELP-----LAKDIDLGDIASMTTGFTGADLAN 546 (641)
Q Consensus 476 aAT--N~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~--~~l~-----l~~dvdl~~LA~~T~GfSgaDL~~ 546 (641)
+|| |+.-.|.+||+++.| ++.+.+.+.++..++++..+.. +++. ++++ .++.++..+.| ..+-+-|
T Consensus 137 GATTENPsF~ln~ALlSR~~---vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~-a~~~l~~~s~G-D~R~aLN 211 (436)
T COG2256 137 GATTENPSFELNPALLSRAR---VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEE-ALDYLVRLSNG-DARRALN 211 (436)
T ss_pred eccCCCCCeeecHHHhhhhh---eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHH-HHHHHHHhcCc-hHHHHHH
Confidence 887 666799999999433 7889999999999999985443 3333 2222 35667777665 3344444
Q ss_pred HHHHHHHHHHhcCCccccHHHHHHHHHHHhc
Q 006535 547 LVNEAALLAGRLNKVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 547 Lv~eAal~A~r~~~~~It~~d~~eAl~rvi~ 577 (641)
+++.+...+ +.++ .+..+++.+.+.+...
T Consensus 212 ~LE~~~~~~-~~~~-~~~~~~l~~~l~~~~~ 240 (436)
T COG2256 212 LLELAALSA-EPDE-VLILELLEEILQRRSA 240 (436)
T ss_pred HHHHHHHhc-CCCc-ccCHHHHHHHHhhhhh
Confidence 444444443 2232 3347788877776544
No 49
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.2e-18 Score=194.57 Aligned_cols=233 Identities=24% Similarity=0.247 Sum_probs=181.1
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC----CCeEEeehhhHHHHHhh
Q 006535 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE----VPFISCSASEFVELYVG 407 (641)
Q Consensus 332 ~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg----~pfi~vs~se~~~~~vG 407 (641)
.|++-..++|++..+ ....| ...+.+|||+||+|||||.||++++.++. +.+..++|+.+...-..
T Consensus 408 ~d~i~~~s~kke~~n---~~~sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhh---hhccc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 566667777765443 22222 33456799999999999999999999874 55677899888776666
Q ss_pred cchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhh-cCC-CCCCcEEEEEecCCCCCCC
Q 006535 408 MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM-DGF-DSNSAVIVLGATNRSDVLD 485 (641)
Q Consensus 408 ~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~em-d~~-~~~~~ViVIaATN~pd~LD 485 (641)
...+.++.+|..|.+++|+||++|++|.|....+. ..+..+...+.++.++..+ ..+ ..+..+.|||+.+....|+
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~--e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSN--ENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcc--cCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 66778899999999999999999999999873321 2344555566666666443 223 3344579999999999999
Q ss_pred hhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc----CCc
Q 006535 486 PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL----NKV 561 (641)
Q Consensus 486 ~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~----~~~ 561 (641)
|.|.+|++|+.++.++.|+..+|.+||+..+++....... -|++-++..|+||...||..++++|...|.+. +.+
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~-~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~k 634 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITM-DDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPK 634 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhh-HHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcc
Confidence 9999999999999999999999999999999875422222 25667999999999999999999999888732 334
Q ss_pred cccHHHHHHHHHHHhc
Q 006535 562 VVEKIDFIHAVERSIA 577 (641)
Q Consensus 562 ~It~~d~~eAl~rvi~ 577 (641)
.+|.++|.++++....
T Consensus 635 lltke~f~ksL~~F~P 650 (952)
T KOG0735|consen 635 LLTKELFEKSLKDFVP 650 (952)
T ss_pred cchHHHHHHHHHhcCh
Confidence 8999999999987543
No 50
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.8e-18 Score=193.09 Aligned_cols=221 Identities=27% Similarity=0.410 Sum_probs=177.8
Q ss_pred HHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCC
Q 006535 346 EIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAP 425 (641)
Q Consensus 346 eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~vG~~~~~vr~lF~~A~~~aP 425 (641)
+++..+..+..-...+......+||+|+||||||++++++|.++|.+++.++|.++.....+..+.++...|.+|+...|
T Consensus 412 ~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~p 491 (953)
T KOG0736|consen 412 ELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSP 491 (953)
T ss_pred HHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCc
Confidence 44444433322222334455679999999999999999999999999999999999999889999999999999999999
Q ss_pred ceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC-CCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCC
Q 006535 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPD 504 (641)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~-~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd 504 (641)
+|||+-++|.++..+++ +.+-...+.++.++. .|.+. ...+++||++|+..+.+++.+++ -|-..|.++.|+
T Consensus 492 avifl~~~dvl~id~dg----ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~ls 564 (953)
T KOG0736|consen 492 AVLFLRNLDVLGIDQDG----GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALS 564 (953)
T ss_pred eEEEEeccceeeecCCC----chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCC
Confidence 99999999999866543 334444566666665 33333 56789999999999999999998 666789999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHh---c-----------------CCcccc
Q 006535 505 KIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGR---L-----------------NKVVVE 564 (641)
Q Consensus 505 ~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r---~-----------------~~~~It 564 (641)
.++|.+||+.++.. ..+..++.+..+|.+|.||+.+||..++..+-..+.. . ....++
T Consensus 565 e~qRl~iLq~y~~~--~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~ 642 (953)
T KOG0736|consen 565 EEQRLEILQWYLNH--LPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLT 642 (953)
T ss_pred HHHHHHHHHHHHhc--cccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceec
Confidence 99999999999976 4678889999999999999999999998776322211 1 125789
Q ss_pred HHHHHHHHHHH
Q 006535 565 KIDFIHAVERS 575 (641)
Q Consensus 565 ~~d~~eAl~rv 575 (641)
++||..|+.+.
T Consensus 643 ~edf~kals~~ 653 (953)
T KOG0736|consen 643 EEDFDKALSRL 653 (953)
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 51
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.78 E-value=4.4e-18 Score=199.11 Aligned_cols=224 Identities=22% Similarity=0.282 Sum_probs=166.6
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc----------CCCeEEe
Q 006535 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (641)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------g~pfi~v 396 (641)
.+-++++++|.++..+.+.+++. .+...++||+||||||||++|+++|.++ +..++.+
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLC------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHh------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 34578899999998776555442 2234579999999999999999999987 6789999
Q ss_pred ehhhHH--HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEE
Q 006535 397 SASEFV--ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (641)
Q Consensus 397 s~se~~--~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViV 474 (641)
+++.+. ..|.|+.+++++++|+.+....|+||||||||.|.+.+... +++.. .-+.|...+. +..+.+
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---~~~~~---~~~~L~~~l~----~g~i~~ 314 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATS---GGSMD---ASNLLKPALS----SGKLRC 314 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCC---CccHH---HHHHHHHHHh----CCCeEE
Confidence 998887 47889999999999999988889999999999998654321 11111 1233334443 467999
Q ss_pred EEecCCC-----CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc----CCCCCCCCCCHHHHHHhCCCC-----C
Q 006535 475 LGATNRS-----DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK----KELPLAKDIDLGDIASMTTGF-----T 540 (641)
Q Consensus 475 IaATN~p-----d~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~----~~l~l~~dvdl~~LA~~T~Gf-----S 540 (641)
|++||.. -.+|+++.| ||+ .|.++.|+.+++.+||+....+ .++.+.++ .+..++..+..| -
T Consensus 315 IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~-al~~~~~ls~ryi~~r~~ 390 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDE-ALEAAVELSARYINDRFL 390 (731)
T ss_pred EEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHH-HHHHHHHhhhcccccccC
Confidence 9999874 357999999 997 7999999999999999976654 23344444 366666666554 3
Q ss_pred HHHHHHHHHHHHHHHHhc----CCccccHHHHHHHHHHHh
Q 006535 541 GADLANLVNEAALLAGRL----NKVVVEKIDFIHAVERSI 576 (641)
Q Consensus 541 gaDL~~Lv~eAal~A~r~----~~~~It~~d~~eAl~rvi 576 (641)
|.....++++|+.....+ ....|+.+|+..++.+..
T Consensus 391 P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 391 PDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred CHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 455678888887654322 245699999999998753
No 52
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.2e-17 Score=187.06 Aligned_cols=219 Identities=47% Similarity=0.700 Sum_probs=194.9
Q ss_pred hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEE
Q 006535 351 LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFI 430 (641)
Q Consensus 351 L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfI 430 (641)
+..++.+..++..+|++++++||||||||++++++|.+ +..+..+++.+...++.|.++...+.+|..+...+|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 45677888999999999999999999999999999999 77668899999999999999999999999999999999999
Q ss_pred cchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHH
Q 006535 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREA 510 (641)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~e 510 (641)
||+|.+.+.+.. ........++.+++..|+++. ...+++++.||++..+|+++++|+||++.+.+..|+...+.+
T Consensus 83 d~~~~~~~~~~~----~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~e 157 (494)
T COG0464 83 DEIDALAPKRSS----DQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLE 157 (494)
T ss_pred chhhhcccCccc----cccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHH
Confidence 999999988764 234455678899999999988 444889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC------CccccHHHHHHHHHHHhc
Q 006535 511 ILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLN------KVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 511 ILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~------~~~It~~d~~eAl~rvi~ 577 (641)
|+..+... +.+..+.+...++..+.|++++++..++.++...+.++. ...++.+++.++++++..
T Consensus 158 i~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 158 ILQIHTRL--MFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHHHHhc--CCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 99998854 455567889999999999999999999999988887774 456888999999998754
No 53
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.77 E-value=1.1e-17 Score=171.55 Aligned_cols=216 Identities=23% Similarity=0.292 Sum_probs=170.6
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHH
Q 006535 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (641)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~ 405 (641)
..+-+|+|.+|++++|++|+-++..-+. ......++|||||||.|||+||..+|+|+|+.+-..++.-+..
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~-------r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-- 90 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKK-------RGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-- 90 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHh-------cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--
Confidence 3567899999999999999988876443 2456778999999999999999999999999999888765422
Q ss_pred hhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC--------C--------C
Q 006535 406 VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------S--------N 469 (641)
Q Consensus 406 vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~--------~--------~ 469 (641)
+..+-.++... ...+|+||||||++.+.- +++ |.-.|+.|. . -
T Consensus 91 ----~gDlaaiLt~L--e~~DVLFIDEIHrl~~~v------------EE~---LYpaMEDf~lDI~IG~gp~Arsv~ldL 149 (332)
T COG2255 91 ----PGDLAAILTNL--EEGDVLFIDEIHRLSPAV------------EEV---LYPAMEDFRLDIIIGKGPAARSIRLDL 149 (332)
T ss_pred ----hhhHHHHHhcC--CcCCeEEEehhhhcChhH------------HHH---hhhhhhheeEEEEEccCCccceEeccC
Confidence 12223333332 234699999999996532 222 334454432 1 1
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHH
Q 006535 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVN 549 (641)
Q Consensus 470 ~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~ 549 (641)
.++.+|+||.+...|...|+. ||.....+..++.++..+|+.......++.+.++ ...+||+++.| +++=..++++
T Consensus 150 ppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~-~a~eIA~rSRG-TPRIAnRLLr 225 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEE-AALEIARRSRG-TPRIANRLLR 225 (332)
T ss_pred CCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChH-HHHHHHHhccC-CcHHHHHHHH
Confidence 368899999999999999988 9999999999999999999999988777777666 47789999988 8899999999
Q ss_pred HHHHHHHhcCCccccHHHHHHHHHHH
Q 006535 550 EAALLAGRLNKVVVEKIDFIHAVERS 575 (641)
Q Consensus 550 eAal~A~r~~~~~It~~d~~eAl~rv 575 (641)
+-.-.|.-.+...|+.+-..+|+...
T Consensus 226 RVRDfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 226 RVRDFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHh
Confidence 99888888888889988888888764
No 54
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.76 E-value=7.6e-18 Score=190.39 Aligned_cols=218 Identities=24% Similarity=0.294 Sum_probs=155.2
Q ss_pred ccccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc----------C
Q 006535 321 KVSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------E 390 (641)
Q Consensus 321 ~~~~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------g 390 (641)
...+..++.+|+|++|++++.+.|+..+. ...+.++||+||||||||++|++++.++ +
T Consensus 54 ~~~~~~rp~~f~~iiGqs~~i~~l~~al~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~ 121 (531)
T TIGR02902 54 PLSEKTRPKSFDEIIGQEEGIKALKAALC------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEG 121 (531)
T ss_pred hHHHhhCcCCHHHeeCcHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCC
Confidence 44566678899999999999888875431 2335689999999999999999998652 4
Q ss_pred CCeEEeehhhH-------HHHHhhcch----------------HHHHHHHHHHHhcCCceEEEcchhhhhhhcCCccccc
Q 006535 391 VPFISCSASEF-------VELYVGMGA----------------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIV 447 (641)
Q Consensus 391 ~pfi~vs~se~-------~~~~vG~~~----------------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~ 447 (641)
.+|+.++|... .+...+... ..-...+.+| ...+|||||||.|....+
T Consensus 122 ~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~~~~q------ 192 (531)
T TIGR02902 122 AAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELHPVQM------ 192 (531)
T ss_pred CCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCCHHHH------
Confidence 68999998531 111111000 0001122222 235999999999865432
Q ss_pred chhHHHHHHHHHHhhhcCC--------------------------CCCCcEEE-EEecCCCCCCChhhhCCCCcceEEEe
Q 006535 448 SNDEREQTLNQLLTEMDGF--------------------------DSNSAVIV-LGATNRSDVLDPALRRPGRFDRVVMV 500 (641)
Q Consensus 448 ~~~e~~~~LnqLL~emd~~--------------------------~~~~~ViV-IaATN~pd~LD~ALlRpgRFd~~I~v 500 (641)
+.|+..|+.. .-...+.+ ++||+.++.|++++++ |+. .+.+
T Consensus 193 ---------~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f 260 (531)
T TIGR02902 193 ---------NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFF 260 (531)
T ss_pred ---------HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeC
Confidence 3334333210 01123444 4556789999999998 774 7889
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 006535 501 ETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (641)
Q Consensus 501 ~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~r 574 (641)
++++.+++.+|++..+++.++.+++++ ++.|+.++. +++++.++++.|+..|..+++..|+.+|+++++..
T Consensus 261 ~pL~~eei~~Il~~~a~k~~i~is~~a-l~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 261 RPLLDEEIKEIAKNAAEKIGINLEKHA-LELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcCHHH-HHHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 999999999999999988877776664 677777664 89999999999999998888889999999999863
No 55
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.75 E-value=1.5e-17 Score=195.81 Aligned_cols=199 Identities=25% Similarity=0.338 Sum_probs=140.0
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH---------
Q 006535 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV--------- 402 (641)
Q Consensus 332 ~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~--------- 402 (641)
+|++|++++|+.+.+.+...... +...+..+||+||||||||++|+++|++++.+|+.++++.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 35999999999998876543211 122334799999999999999999999999999999765432
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcC-----CC--------CC
Q 006535 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FD--------SN 469 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~-----~~--------~~ 469 (641)
..|.|.....+.+.|..+....| ||||||||.+.+..++. ..+.|+..||. |. ..
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-----------~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-----------PASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-----------HHHHHHHhcCHHhcCccccccCCceecc
Confidence 24667777788888888877667 89999999998543211 12344444442 11 12
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc-----CCC-----CCCCCCCHHHHHH-hCCC
Q 006535 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK-----KEL-----PLAKDIDLGDIAS-MTTG 538 (641)
Q Consensus 470 ~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~-----~~l-----~l~~dvdl~~LA~-~T~G 538 (641)
.++++|+|||..+.++++|++ ||+ .|.++.|+.+++.+|++.++.. .++ .+.++ .+..|++ .+..
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~-~l~~i~~~~~~e 537 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDE-ALLLLIKYYTRE 537 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHH-HHHHHHHhcChh
Confidence 478999999999999999999 995 7899999999999999887622 222 22222 2455554 3334
Q ss_pred CCHHHHHHHHHHHH
Q 006535 539 FTGADLANLVNEAA 552 (641)
Q Consensus 539 fSgaDL~~Lv~eAa 552 (641)
+..++|+..+...+
T Consensus 538 ~g~R~l~r~i~~~~ 551 (775)
T TIGR00763 538 AGVRNLERQIEKIC 551 (775)
T ss_pred cCChHHHHHHHHHH
Confidence 44566665555544
No 56
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.75 E-value=4.5e-17 Score=180.71 Aligned_cols=225 Identities=19% Similarity=0.266 Sum_probs=153.6
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEeehhh
Q 006535 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (641)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-----g~pfi~vs~se 400 (641)
.+..+|++.+.-+........+..+..+|. ...++++||||||+|||+|++++++++ +..++++++.+
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~~-------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCcC-------ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 356789995422333323333333333321 233569999999999999999999987 56789999998
Q ss_pred HHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCC
Q 006535 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (641)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~ 480 (641)
|...+.........+.|..... .+++|+|||+|.+..+.. . . ..|+..++........+||+++..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~~------~----~---~~l~~~~n~l~~~~~~iiits~~~ 254 (450)
T PRK00149 189 FTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKER------T----Q---EEFFHTFNALHEAGKQIVLTSDRP 254 (450)
T ss_pred HHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCHH------H----H---HHHHHHHHHHHHCCCcEEEECCCC
Confidence 8776554322212223333222 467999999999854321 1 1 122222222222233466666666
Q ss_pred CCC---CChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 006535 481 SDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 481 pd~---LD~ALlRpgRFd--~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A 555 (641)
|.. +++++.+ ||. ..+.+.+|+.++|.+|++..+...++.+++++ ++.||....| +.++|..+++.....|
T Consensus 255 p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~-l~~ia~~~~~-~~R~l~~~l~~l~~~~ 330 (450)
T PRK00149 255 PKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEV-LEFIAKNITS-NVRELEGALNRLIAYA 330 (450)
T ss_pred HHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHcCcCC-CHHHHHHHHHHHHHHH
Confidence 644 6788887 885 58999999999999999999988778888775 8889998876 8999999999988777
Q ss_pred HhcCCccccHHHHHHHHHHHh
Q 006535 556 GRLNKVVVEKIDFIHAVERSI 576 (641)
Q Consensus 556 ~r~~~~~It~~d~~eAl~rvi 576 (641)
...+ ..||.+.+.+++....
T Consensus 331 ~~~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 331 SLTG-KPITLELAKEALKDLL 350 (450)
T ss_pred HhhC-CCCCHHHHHHHHHHhh
Confidence 6554 4589999999888764
No 57
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=8.9e-17 Score=179.07 Aligned_cols=207 Identities=19% Similarity=0.234 Sum_probs=150.8
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCC------------
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV------------ 391 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~------------ 391 (641)
+..++.+|+|++|++++++.|...+.. .+.|.++||+||||||||++|+++|+.+++
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKK-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 445678999999999998888776642 245667999999999999999999998764
Q ss_pred ------------CeEEeehhhHHHHHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHH
Q 006535 392 ------------PFISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (641)
Q Consensus 392 ------------pfi~vs~se~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (641)
.++.++++. ..+...++++.+.+.. ....||||||+|.|... .
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~---------------a 133 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE---------------A 133 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH---------------H
Confidence 233443321 1234556666655542 23459999999998532 3
Q ss_pred HHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 006535 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (641)
Q Consensus 456 LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~ 535 (641)
.+.|+..++.. ...+++|++|+.+..+++++.+ |+. .+.+.+|+.++...+++..+...++.+++++ ++.|+..
T Consensus 134 ~~~LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~ea-l~~Ia~~ 207 (472)
T PRK14962 134 FNALLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREA-LSFIAKR 207 (472)
T ss_pred HHHHHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHH
Confidence 46677777743 3457777777778899999998 764 8999999999999999999887777777664 7888888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 006535 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 536 T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~ 573 (641)
+.| +.+++.+.++.+...+ + ..||.+++.+++.
T Consensus 208 s~G-dlR~aln~Le~l~~~~---~-~~It~e~V~~~l~ 240 (472)
T PRK14962 208 ASG-GLRDALTMLEQVWKFS---E-GKITLETVHEALG 240 (472)
T ss_pred hCC-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHc
Confidence 765 6777777777655432 2 2488888887764
No 58
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.73 E-value=1.6e-16 Score=173.84 Aligned_cols=223 Identities=22% Similarity=0.303 Sum_probs=150.3
Q ss_pred Ccccccc-ccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEeehhh
Q 006535 327 DTITFAD-VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (641)
Q Consensus 327 ~~vtf~D-V~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-----g~pfi~vs~se 400 (641)
+..+|++ ++|.+. ......+.....+| .....+++||||||+|||+|++++++++ +..++++++.+
T Consensus 105 ~~~tfd~fi~g~~n-~~a~~~~~~~~~~~-------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~ 176 (405)
T TIGR00362 105 PKYTFDNFVVGKSN-RLAHAAALAVAENP-------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEK 176 (405)
T ss_pred CCCcccccccCCcH-HHHHHHHHHHHhCc-------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHH
Confidence 5678999 556443 22222233223332 1234579999999999999999999986 67899999998
Q ss_pred HHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCC
Q 006535 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (641)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~ 480 (641)
|...+.......-.+.|..... .+.+|+|||+|.+..+.. . . ..|+..++........+||+++..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~~------~----~---~~l~~~~n~~~~~~~~iiits~~~ 242 (405)
T TIGR00362 177 FTNDFVNALRNNKMEEFKEKYR-SVDLLLIDDIQFLAGKER------T----Q---EEFFHTFNALHENGKQIVLTSDRP 242 (405)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH-hCCEEEEehhhhhcCCHH------H----H---HHHHHHHHHHHHCCCCEEEecCCC
Confidence 8765543221111112222222 356999999999854321 1 1 122222222212233466666666
Q ss_pred CC---CCChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 006535 481 SD---VLDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 481 pd---~LD~ALlRpgRFd--~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A 555 (641)
|. .+++.+.+ ||. ..+.+++|+.++|.+|++..+...++.+++++ ++.||.+..+ +.++|+.+++.....|
T Consensus 243 p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~-l~~ia~~~~~-~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 243 PKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEV-LEFIAKNIRS-NVRELEGALNRLLAYA 318 (405)
T ss_pred HHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 64 35678887 775 57999999999999999999988888887765 8889988876 8999999999988777
Q ss_pred HhcCCccccHHHHHHHHHHHh
Q 006535 556 GRLNKVVVEKIDFIHAVERSI 576 (641)
Q Consensus 556 ~r~~~~~It~~d~~eAl~rvi 576 (641)
...+ ..||.+.+.+++....
T Consensus 319 ~~~~-~~it~~~~~~~L~~~~ 338 (405)
T TIGR00362 319 SLTG-KPITLELAKEALKDLL 338 (405)
T ss_pred HHhC-CCCCHHHHHHHHHHhc
Confidence 5544 5589988888887654
No 59
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.1e-16 Score=177.12 Aligned_cols=213 Identities=17% Similarity=0.224 Sum_probs=154.7
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe-------EE
Q 006535 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------IS 395 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pf-------i~ 395 (641)
++...+.+|+||+|++.+...|...+.. .+.+..+||+||||||||++|+++|..+++.- ..
T Consensus 9 ~~KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~ 77 (484)
T PRK14956 9 SRKYRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNE 77 (484)
T ss_pred HHHhCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCC
Confidence 4455778999999999999988877752 23456799999999999999999999887531 10
Q ss_pred e-ehhhHHH----------HHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHH
Q 006535 396 C-SASEFVE----------LYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (641)
Q Consensus 396 v-s~se~~~----------~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL 460 (641)
+ +|..+.. .....+...+|++.+.+.. ....|+||||+|.|.. ...|.||
T Consensus 78 C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~---------------~A~NALL 142 (484)
T PRK14956 78 CTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD---------------QSFNALL 142 (484)
T ss_pred CcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH---------------HHHHHHH
Confidence 1 1111110 0011234556766665542 3345999999999853 3457888
Q ss_pred hhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCC
Q 006535 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (641)
Q Consensus 461 ~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfS 540 (641)
..|+. ....+++|.+|+.++.|.+++++ |.. .+.|..++.++..+.++..+...++.++++ .+..|++.+.| +
T Consensus 143 KtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~e-AL~~Ia~~S~G-d 215 (484)
T PRK14956 143 KTLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQE-GLFWIAKKGDG-S 215 (484)
T ss_pred HHhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-h
Confidence 88874 34578888899999999999998 653 688999999999999999998877777666 48889998887 8
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006535 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 541 gaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl 572 (641)
.++..++++.+...+ ...|+.+++.+.+
T Consensus 216 ~RdAL~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 216 VRDMLSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 899999998876442 2247776665433
No 60
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.72 E-value=2e-16 Score=184.60 Aligned_cols=221 Identities=22% Similarity=0.289 Sum_probs=158.4
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc----------CCCeEEeehh
Q 006535 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSAS 399 (641)
Q Consensus 330 tf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------g~pfi~vs~s 399 (641)
.++.++|.++..+.+.+++.. +.+.++||+||||||||++|+++|... +..++.++..
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~ 251 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHH
Confidence 467899999987777665542 234578999999999999999999864 4556666666
Q ss_pred hHH--HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEe
Q 006535 400 EFV--ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (641)
Q Consensus 400 e~~--~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaA 477 (641)
.++ ..|.|..+.+++.+|..+....++||||||||.|.+.+... ++..+...++..++ .+..+.+|++
T Consensus 252 ~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~---~g~~d~~nlLkp~L-------~~g~i~vIgA 321 (758)
T PRK11034 252 SLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS---GGQVDAANLIKPLL-------SSGKIRVIGS 321 (758)
T ss_pred HHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCC---CcHHHHHHHHHHHH-------hCCCeEEEec
Confidence 665 46788889999999999988889999999999998654321 12222222333332 2567999999
Q ss_pred cCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC----CCCCCCCCCHHHHHHhC-----CCCCHHH
Q 006535 478 TNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIASMT-----TGFTGAD 543 (641)
Q Consensus 478 TN~pd-----~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~----~l~l~~dvdl~~LA~~T-----~GfSgaD 543 (641)
|+.++ .+|++|.| ||+ .|.++.|+.+++.+||+.+..+. ++.+.++. +...+..+ ..+-|..
T Consensus 322 Tt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~a-l~~a~~ls~ryi~~r~lPdK 397 (758)
T PRK11034 322 TTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKA-VRAAVELAVKYINDRHLPDK 397 (758)
T ss_pred CChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHH-HHHHHHHhhccccCccChHH
Confidence 99864 57999999 996 79999999999999999876542 23333322 33333322 2345678
Q ss_pred HHHHHHHHHHHHHh----cCCccccHHHHHHHHHHHh
Q 006535 544 LANLVNEAALLAGR----LNKVVVEKIDFIHAVERSI 576 (641)
Q Consensus 544 L~~Lv~eAal~A~r----~~~~~It~~d~~eAl~rvi 576 (641)
...++++|+..... ..+..|+.+|+.+.+.+..
T Consensus 398 aidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 398 AIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_pred HHHHHHHHHHhhccCcccccccccChhhHHHHHHHHh
Confidence 99999999865432 2345688899988887654
No 61
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.71 E-value=2.5e-16 Score=173.09 Aligned_cols=204 Identities=28% Similarity=0.418 Sum_probs=148.2
Q ss_pred CCCccccccccCChHHHHH---HHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhH
Q 006535 325 QGDTITFADVAGVDEAKEE---LEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (641)
Q Consensus 325 ~~~~vtf~DV~G~ee~K~~---L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~ 401 (641)
...+.+|+|++|++++... |.+++.. ..+.+++|+||||||||++|+++|+..+.+|+.+++..
T Consensus 5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~- 71 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT- 71 (413)
T ss_pred hhCCCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc-
Confidence 3456789999999998666 6666531 22347999999999999999999999999999998753
Q ss_pred HHHHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEe
Q 006535 402 VELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (641)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaA 477 (641)
.+...++.+++.+.. ....||||||+|.+.... .+.|+..++ ...+++|++
T Consensus 72 ------~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~---------------q~~LL~~le----~~~iilI~a 126 (413)
T PRK13342 72 ------SGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQ---------------QDALLPHVE----DGTITLIGA 126 (413)
T ss_pred ------ccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHH---------------HHHHHHHhh----cCcEEEEEe
Confidence 234456677766642 256799999999985332 244555555 245677766
Q ss_pred c--CCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC--CC-CCCCCCCHHHHHHhCCCCCHHHHHHHHHHHH
Q 006535 478 T--NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK--EL-PLAKDIDLGDIASMTTGFTGADLANLVNEAA 552 (641)
Q Consensus 478 T--N~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~--~l-~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAa 552 (641)
| |....+++++++ |+ ..+.+.+++.++...+++..+... ++ .+.++ .++.+++.+.| ..+.+.++++.+.
T Consensus 127 tt~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~-al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 127 TTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDE-ALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred CCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHH-HHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 5 334588999998 77 588999999999999999887642 32 44433 36677887755 7778878877766
Q ss_pred HHHHhcCCccccHHHHHHHHHHHh
Q 006535 553 LLAGRLNKVVVEKIDFIHAVERSI 576 (641)
Q Consensus 553 l~A~r~~~~~It~~d~~eAl~rvi 576 (641)
.. ...|+.+++.+++....
T Consensus 202 ~~-----~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 202 LG-----VDSITLELLEEALQKRA 220 (413)
T ss_pred Hc-----cCCCCHHHHHHHHhhhh
Confidence 43 45688888888887643
No 62
>PRK04195 replication factor C large subunit; Provisional
Probab=99.71 E-value=2.6e-16 Score=176.20 Aligned_cols=210 Identities=23% Similarity=0.267 Sum_probs=150.5
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~ 403 (641)
+...+.+|+||+|++++++.|.+.+....+ ..+++++||+||||||||++|+++|++++.+++.+++++...
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 345677899999999999999988865432 234788999999999999999999999999999999876532
Q ss_pred HHhhcchHHHHHHHHHHHh------cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEe
Q 006535 404 LYVGMGASRVRDLFARAKK------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (641)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaA 477 (641)
. ..++.+...+.. ..+.||+|||+|.+....+ ...++.|+..++. .+..+|++
T Consensus 78 ~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-----------~~~~~aL~~~l~~----~~~~iIli 136 (482)
T PRK04195 78 A------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-----------RGGARAILELIKK----AKQPIILT 136 (482)
T ss_pred H------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-----------hhHHHHHHHHHHc----CCCCEEEe
Confidence 1 223333333321 2466999999999864221 1223455555552 22345567
Q ss_pred cCCCCCCCh-hhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 006535 478 TNRSDVLDP-ALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAG 556 (641)
Q Consensus 478 TN~pd~LD~-ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~ 556 (641)
+|.+..+++ .+++ ....|.|++|+..+...+++..+.+.++.++++ .+..|+..+. +|++.+++.....+
T Consensus 137 ~n~~~~~~~k~Lrs---r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~e-aL~~Ia~~s~----GDlR~ain~Lq~~a- 207 (482)
T PRK04195 137 ANDPYDPSLRELRN---ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDE-ALKEIAERSG----GDLRSAINDLQAIA- 207 (482)
T ss_pred ccCccccchhhHhc---cceEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC----CCHHHHHHHHHHHh-
Confidence 788877777 5544 345899999999999999999998888877665 4888888765 47888887766544
Q ss_pred hcCCccccHHHHHHHH
Q 006535 557 RLNKVVVEKIDFIHAV 572 (641)
Q Consensus 557 r~~~~~It~~d~~eAl 572 (641)
.+...|+.+++....
T Consensus 208 -~~~~~it~~~v~~~~ 222 (482)
T PRK04195 208 -EGYGKLTLEDVKTLG 222 (482)
T ss_pred -cCCCCCcHHHHHHhh
Confidence 344567777776554
No 63
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.71 E-value=1.7e-15 Score=162.56 Aligned_cols=224 Identities=23% Similarity=0.249 Sum_probs=153.0
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC---------CCeEEeehh
Q 006535 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSAS 399 (641)
Q Consensus 329 vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg---------~pfi~vs~s 399 (641)
...++++|.++..+.|...+..... ...+.+++|+||||||||+++++++.++. +++++++|.
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 3456899999988888777654221 23456799999999999999999998652 578888875
Q ss_pred hHHH----------HHh--hc-------c-hHHHHHHHHHHH-hcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHH
Q 006535 400 EFVE----------LYV--GM-------G-ASRVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (641)
Q Consensus 400 e~~~----------~~v--G~-------~-~~~vr~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Lnq 458 (641)
...+ ... +. + .+.+..+++... ...+.||+|||+|.+.... ...+.+
T Consensus 84 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~------------~~~L~~ 151 (365)
T TIGR02928 84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD------------DDLLYQ 151 (365)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC------------cHHHHh
Confidence 4321 111 11 1 122344444443 2456799999999996221 124556
Q ss_pred HHhhhcC-CCCCCcEEEEEecCCCC---CCChhhhCCCCcc-eEEEecCCCHHHHHHHHHHHHhc--CCCCCCCCCCHHH
Q 006535 459 LLTEMDG-FDSNSAVIVLGATNRSD---VLDPALRRPGRFD-RVVMVETPDKIGREAILKVHVSK--KELPLAKDIDLGD 531 (641)
Q Consensus 459 LL~emd~-~~~~~~ViVIaATN~pd---~LD~ALlRpgRFd-~~I~v~~Pd~~eR~eILk~~l~~--~~l~l~~dvdl~~ 531 (641)
|+...+. ...+.++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++.++.. .+..+++++ ++.
T Consensus 152 l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~-l~~ 228 (365)
T TIGR02928 152 LSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGV-IPL 228 (365)
T ss_pred HhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhH-HHH
Confidence 6554221 12235788899998875 57888877 674 67999999999999999998862 111233332 333
Q ss_pred ---HHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHh
Q 006535 532 ---IASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (641)
Q Consensus 532 ---LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~rvi 576 (641)
++..+.| ..+.+.+++..|+..|..++...|+.+|+..|++...
T Consensus 229 i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 229 CAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE 275 (365)
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 3444455 5677788999999999888888999999999988763
No 64
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.71 E-value=4e-16 Score=172.79 Aligned_cols=225 Identities=16% Similarity=0.219 Sum_probs=152.6
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEeehhh
Q 006535 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (641)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-----g~pfi~vs~se 400 (641)
.+..||++.+--+........+.....+|. ..++++||||||+|||+|++++++++ +..++++++.+
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~--------~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNPG--------RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCcC--------CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 466789997733333333333433333331 13569999999999999999999975 46788999998
Q ss_pred HHHHHhhcch-HHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006535 401 FVELYVGMGA-SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 401 ~~~~~vG~~~-~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN 479 (641)
|...+...-. ..+. -|.......+.+|+|||++.+..... ...+.-.+++.+. .....+|+++.+
T Consensus 171 f~~~~~~~~~~~~~~-~f~~~~~~~~dvLlIDDi~~l~~~~~------~q~elf~~~n~l~-------~~~k~iIitsd~ 236 (440)
T PRK14088 171 FLNDLVDSMKEGKLN-EFREKYRKKVDVLLIDDVQFLIGKTG------VQTELFHTFNELH-------DSGKQIVICSDR 236 (440)
T ss_pred HHHHHHHHHhcccHH-HHHHHHHhcCCEEEEechhhhcCcHH------HHHHHHHHHHHHH-------HcCCeEEEECCC
Confidence 8776543211 1222 23333334578999999998853321 1112222222222 233456666666
Q ss_pred CCCC---CChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 006535 480 RSDV---LDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (641)
Q Consensus 480 ~pd~---LD~ALlRpgRF--d~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~ 554 (641)
.|.. +++.+.+ || ...+.+++||.+.|.+|++..+...++.+++++ ++.||....| +.++|+.+++.....
T Consensus 237 ~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev-~~~Ia~~~~~-~~R~L~g~l~~l~~~ 312 (440)
T PRK14088 237 EPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEV-LNFVAENVDD-NLRRLRGAIIKLLVY 312 (440)
T ss_pred CHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHhcccc-CHHHHHHHHHHHHHH
Confidence 6654 4567777 66 467899999999999999999988788888775 8889988876 889999999988766
Q ss_pred HHhcCCccccHHHHHHHHHHHhc
Q 006535 555 AGRLNKVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 555 A~r~~~~~It~~d~~eAl~rvi~ 577 (641)
+...+ ..||.+.+.+++...+.
T Consensus 313 ~~~~~-~~it~~~a~~~L~~~~~ 334 (440)
T PRK14088 313 KETTG-EEVDLKEAILLLKDFIK 334 (440)
T ss_pred HHHhC-CCCCHHHHHHHHHHHhc
Confidence 65544 45888888888876643
No 65
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=5.2e-16 Score=167.88 Aligned_cols=213 Identities=17% Similarity=0.177 Sum_probs=150.6
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEE--------
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-------- 395 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~-------- 395 (641)
+...+.+|+||+|++++++.|+..+.. .+.|..+||+||||+|||++|+++|.++.+....
T Consensus 8 ~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 8 RKWRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HHhCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 445678999999999999988877742 2456678999999999999999999988642110
Q ss_pred eehhhHHH----------HHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHh
Q 006535 396 CSASEFVE----------LYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (641)
Q Consensus 396 vs~se~~~----------~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~ 461 (641)
.+|.++.. .........++++.+.+.. ....|++|||+|.+.. ...+.|+.
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~---------------~a~naLLk 141 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR---------------HSFNALLK 141 (363)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH---------------HHHHHHHH
Confidence 01111110 0001233456666665432 1234999999998842 23466777
Q ss_pred hhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCH
Q 006535 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (641)
Q Consensus 462 emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSg 541 (641)
.++... ..+.+|.+|+.++.+.+.+.+ |+ ..+.+.+|+.++..++++..+++.+..++++ .+..++..+.| ++
T Consensus 142 ~lEe~~--~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~-al~~ia~~s~G-~~ 214 (363)
T PRK14961 142 TLEEPP--QHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEY-ALKLIAYHAHG-SM 214 (363)
T ss_pred HHhcCC--CCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 777533 456667677778889999887 65 4789999999999999999988777666555 47778888876 88
Q ss_pred HHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 006535 542 ADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 542 aDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~ 573 (641)
+++.++++.+... +...|+.+++.+++.
T Consensus 215 R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 215 RDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 8888888877643 345788888877654
No 66
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=7.8e-16 Score=172.53 Aligned_cols=217 Identities=18% Similarity=0.234 Sum_probs=158.9
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe---------
Q 006535 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF--------- 393 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pf--------- 393 (641)
..+..+.+|+|++|++.+.+.|+..+.. .+.+.++||+||||||||++|+++|..+++.-
T Consensus 12 a~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~ 80 (507)
T PRK06645 12 ARKYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK 80 (507)
T ss_pred hhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC
Confidence 3445678999999999999988876642 34567899999999999999999999886521
Q ss_pred --EE-eehhhHHHH----------HhhcchHHHHHHHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHHH
Q 006535 394 --IS-CSASEFVEL----------YVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (641)
Q Consensus 394 --i~-vs~se~~~~----------~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (641)
.. -+|..+.+. ....+...++++++.+... ...|++|||+|.+.. ...
T Consensus 81 ~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~---------------~a~ 145 (507)
T PRK06645 81 TCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK---------------GAF 145 (507)
T ss_pred CCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH---------------HHH
Confidence 11 112122110 0123456788888777532 235999999998842 235
Q ss_pred HHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhC
Q 006535 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (641)
Q Consensus 457 nqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T 536 (641)
+.|+..|+. ....+++|.+|+.++.+++.+++ |. ..+.+..++.++..++++..+++.++.++++ .+..|+..+
T Consensus 146 naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~e-AL~~Ia~~s 219 (507)
T PRK06645 146 NALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIE-ALRIIAYKS 219 (507)
T ss_pred HHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 777877774 34567777788888899999988 65 4788999999999999999998887777655 478889888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 006535 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 537 ~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~ 573 (641)
.| +.+++.++++.++..+... ...||.+++.+.+.
T Consensus 220 ~G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~llg 254 (507)
T PRK06645 220 EG-SARDAVSILDQAASMSAKS-DNIISPQVINQMLG 254 (507)
T ss_pred CC-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHHC
Confidence 77 8999999999987765322 23588877776543
No 67
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.70 E-value=3.7e-15 Score=161.72 Aligned_cols=242 Identities=21% Similarity=0.215 Sum_probs=161.3
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEeehhhHH-
Q 006535 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEFV- 402 (641)
Q Consensus 329 vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-----g~pfi~vs~se~~- 402 (641)
...+.++|.++..++|...+..... ...|.+++|+||||||||++++.+++++ ++.+++++|....
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 3556799999988887777643211 2345679999999999999999999876 5788999885321
Q ss_pred ---------HHHhh-------cchH-HHHHHHHHHHh-cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhc
Q 006535 403 ---------ELYVG-------MGAS-RVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (641)
Q Consensus 403 ---------~~~vG-------~~~~-~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd 464 (641)
....+ .... .+..+.+.... ..+.||+|||+|.+....+ ...+..|+..++
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-----------~~~l~~l~~~~~ 167 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-----------NDVLYSLLRAHE 167 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-----------chHHHHHHHhhh
Confidence 11111 0111 22222332222 3467999999999972211 235666766665
Q ss_pred CCCCCCcEEEEEecCCC---CCCChhhhCCCCcc-eEEEecCCCHHHHHHHHHHHHhcC--CCCCCCCCCHHHHHHhCCC
Q 006535 465 GFDSNSAVIVLGATNRS---DVLDPALRRPGRFD-RVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGDIASMTTG 538 (641)
Q Consensus 465 ~~~~~~~ViVIaATN~p---d~LD~ALlRpgRFd-~~I~v~~Pd~~eR~eILk~~l~~~--~l~l~~dvdl~~LA~~T~G 538 (641)
.... .++.+|+++|.. +.+++.+.+ ||. ..+.+++++.++..+|++.++... ...+.++ .++.+++.+.+
T Consensus 168 ~~~~-~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~-~l~~i~~~~~~ 243 (394)
T PRK00411 168 EYPG-ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDE-VLDLIADLTAR 243 (394)
T ss_pred ccCC-CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHh-HHHHHHHHHHH
Confidence 5432 368888888765 356777766 553 578999999999999999988542 1123333 35667776633
Q ss_pred C--CHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcch-hhhhccCChhHHHH
Q 006535 539 F--TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGI-EKKTAKLKGSEKAV 593 (641)
Q Consensus 539 f--SgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~rvi~g~-~~~~~~l~~~ek~~ 593 (641)
. ..+.+.+++..|+..|..++...|+.+|+.+|+++..... ......++..++.+
T Consensus 244 ~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~ 301 (394)
T PRK00411 244 EHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLL 301 (394)
T ss_pred hcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 2 4566778899999999888889999999999998874332 22234556665544
No 68
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=6e-16 Score=175.69 Aligned_cols=205 Identities=20% Similarity=0.233 Sum_probs=152.2
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----------
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p----------- 392 (641)
+..++.+|+||+|++.+++.|...+. ..+.+..+||+||||+|||++|+++|+.+++.
T Consensus 7 rKyRPktFddVIGQe~vv~~L~~aI~-----------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSRALSSALE-----------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 34467799999999999999888775 23456789999999999999999999988652
Q ss_pred -------------eEEeehhhHHHHHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHH
Q 006535 393 -------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (641)
Q Consensus 393 -------------fi~vs~se~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (641)
++.+++++ ..+...+|++...+.. ....|++|||+|.|... .
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~---------------A 134 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH---------------S 134 (702)
T ss_pred HHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH---------------H
Confidence 22332221 1234567777665532 33459999999998532 3
Q ss_pred HHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 006535 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (641)
Q Consensus 456 LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~ 535 (641)
.+.|+..|+.. ...+.+|.+|+.+..+.+.+++ |. .++.|.+++.++..+.++..+.+.++.++++ .+..|+..
T Consensus 135 ~NALLKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~e-AL~~IA~~ 208 (702)
T PRK14960 135 FNALLKTLEEP--PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQD-AIWQIAES 208 (702)
T ss_pred HHHHHHHHhcC--CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 47788888743 3456777777778888888887 65 4889999999999999999998888777665 47888988
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 006535 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (641)
Q Consensus 536 T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eA 571 (641)
+.| +.+++.+++..+... +...|+.+++.+.
T Consensus 209 S~G-dLRdALnLLDQaIay----g~g~IT~edV~~l 239 (702)
T PRK14960 209 AQG-SLRDALSLTDQAIAY----GQGAVHHQDVKEM 239 (702)
T ss_pred cCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 876 889998888877643 3456787777654
No 69
>PRK06893 DNA replication initiation factor; Validated
Probab=99.69 E-value=1.2e-15 Score=154.92 Aligned_cols=211 Identities=13% Similarity=0.143 Sum_probs=138.6
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH
Q 006535 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (641)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~ 403 (641)
+..+|++.+|.+... .+..+.... . ......++||||||||||+|++|+|+++ +....+++..+...
T Consensus 11 ~~~~fd~f~~~~~~~-~~~~~~~~~------~---~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~ 80 (229)
T PRK06893 11 DDETLDNFYADNNLL-LLDSLRKNF------I---DLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY 80 (229)
T ss_pred CcccccccccCChHH-HHHHHHHHh------h---ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh
Confidence 567899999776532 112121111 1 1122358999999999999999999985 34445555432211
Q ss_pred HHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCC
Q 006535 404 LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV 483 (641)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~ 483 (641)
. ..+.++.. ....+|+|||++.+.... +.+..+..++..+. .....++|++++..|..
T Consensus 81 ~--------~~~~~~~~--~~~dlLilDDi~~~~~~~----------~~~~~l~~l~n~~~--~~~~~illits~~~p~~ 138 (229)
T PRK06893 81 F--------SPAVLENL--EQQDLVCLDDLQAVIGNE----------EWELAIFDLFNRIK--EQGKTLLLISADCSPHA 138 (229)
T ss_pred h--------hHHHHhhc--ccCCEEEEeChhhhcCCh----------HHHHHHHHHHHHHH--HcCCcEEEEeCCCChHH
Confidence 1 11222222 235699999999885322 22333444444432 12233556666666765
Q ss_pred CC---hhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCC
Q 006535 484 LD---PALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (641)
Q Consensus 484 LD---~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~ 560 (641)
++ +.|.++.+++..+.++.|+.++|.+|++..+..+++.+++++ ++.|+++.+| +.+.|.++++.....+. ...
T Consensus 139 l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v-~~~L~~~~~~-d~r~l~~~l~~l~~~~~-~~~ 215 (229)
T PRK06893 139 LSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEV-ANFLLKRLDR-DMHTLFDALDLLDKASL-QAQ 215 (229)
T ss_pred ccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHHHHHHH-hcC
Confidence 54 889886666789999999999999999999988888888775 8889998886 88999999987654443 333
Q ss_pred ccccHHHHHHHH
Q 006535 561 VVVEKIDFIHAV 572 (641)
Q Consensus 561 ~~It~~d~~eAl 572 (641)
..||...+.+++
T Consensus 216 ~~it~~~v~~~L 227 (229)
T PRK06893 216 RKLTIPFVKEIL 227 (229)
T ss_pred CCCCHHHHHHHh
Confidence 468888887765
No 70
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=2.8e-16 Score=177.95 Aligned_cols=198 Identities=17% Similarity=0.253 Sum_probs=145.9
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----------
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p----------- 392 (641)
++..+.+|+||+|++++++.|.+.+.. .+.+..+||+||+|+|||++|+.+|+.+++.
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 345677999999999999999888763 2456678999999999999999999988761
Q ss_pred -eEEe-ehh--------hHHHH--HhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHH
Q 006535 393 -FISC-SAS--------EFVEL--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (641)
Q Consensus 393 -fi~v-s~s--------e~~~~--~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (641)
.-.| +|. ++++. ....+...++++.+.+.. ....|+||||+|.|.. ...
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~---------------~Aa 141 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN---------------HAF 141 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH---------------HHH
Confidence 1111 111 11110 011234567777766542 3346999999999853 245
Q ss_pred HHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhC
Q 006535 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (641)
Q Consensus 457 nqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T 536 (641)
|.||..|+. ...++++|.+||.++.|.+.+++ |. .++.|..++.++..+.|+..+.+.++..+++ .+..|++.+
T Consensus 142 NALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~e-AL~~IA~~A 215 (700)
T PRK12323 142 NAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVN-ALRLLAQAA 215 (700)
T ss_pred HHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 888998884 34567888889999999999998 64 4789999999999999998887776665444 367788888
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 006535 537 TGFTGADLANLVNEAALL 554 (641)
Q Consensus 537 ~GfSgaDL~~Lv~eAal~ 554 (641)
.| +.++..++++.+...
T Consensus 216 ~G-s~RdALsLLdQaia~ 232 (700)
T PRK12323 216 QG-SMRDALSLTDQAIAY 232 (700)
T ss_pred CC-CHHHHHHHHHHHHHh
Confidence 77 899999998877643
No 71
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=4.9e-16 Score=178.01 Aligned_cols=199 Identities=18% Similarity=0.222 Sum_probs=147.2
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe-------EEe
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISC 396 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pf-------i~v 396 (641)
++..+.+|+||+|++++++.|+..++. .+.+..+||+||+|||||++|+++|+.+++.- -.|
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 445677999999999999998887752 34566789999999999999999999886521 000
Q ss_pred -ehhhHHH----------HHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHh
Q 006535 397 -SASEFVE----------LYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (641)
Q Consensus 397 -s~se~~~----------~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~ 461 (641)
+|..+.+ .....+...++++++.+.. ....|+||||+|.|.. ...|.||.
T Consensus 77 ~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~---------------~A~NALLK 141 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN---------------HAFNAMLK 141 (830)
T ss_pred HHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH---------------HHHHHHHH
Confidence 1111110 0011234567777776642 2345999999999853 23477888
Q ss_pred hhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCH
Q 006535 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (641)
Q Consensus 462 emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSg 541 (641)
.|+.. ..++++|.+||.++.|.+.+++ |. .++.|..++.++..++|+..+.+.++.++++ .+..|++...| +.
T Consensus 142 tLEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~e-AL~lIA~~A~G-sm 214 (830)
T PRK07003 142 TLEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQ-ALRLLARAAQG-SM 214 (830)
T ss_pred HHHhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 88743 3467888889999999999988 65 4889999999999999999998877777655 48888998887 78
Q ss_pred HHHHHHHHHHHHHH
Q 006535 542 ADLANLVNEAALLA 555 (641)
Q Consensus 542 aDL~~Lv~eAal~A 555 (641)
++..+++..+....
T Consensus 215 RdALsLLdQAia~~ 228 (830)
T PRK07003 215 RDALSLTDQAIAYS 228 (830)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999988877543
No 72
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=5.3e-16 Score=174.42 Aligned_cols=206 Identities=17% Similarity=0.189 Sum_probs=152.4
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----------
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p----------- 392 (641)
+...+.+|+||+|++.+++.|...+.. .+.|..+||+||||||||++|+++|+.+++.
T Consensus 8 ~kyRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 8 RKWRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHHCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 445677999999999999999888753 2456678999999999999999999988653
Q ss_pred -------------eEEeehhhHHHHHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHH
Q 006535 393 -------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (641)
Q Consensus 393 -------------fi~vs~se~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (641)
++.++.+ ...+...+|++.+.+.. ....|++|||+|.|... .
T Consensus 77 ~~C~~i~~g~~~d~~eidaa------s~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~---------------a 135 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAA------SRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH---------------S 135 (509)
T ss_pred HHHHHHhcCCCceEEEEccc------ccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH---------------H
Confidence 3333322 12344567777766542 23359999999998532 3
Q ss_pred HHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 006535 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (641)
Q Consensus 456 LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~ 535 (641)
.|.|+..|+... ..+.+|.+|+.+..+.+.+++ |. ..+.+.+++.++....++..+.+.++.++++ .+..+++.
T Consensus 136 ~naLLk~LEepp--~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~-al~~ia~~ 209 (509)
T PRK14958 136 FNALLKTLEEPP--SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENA-ALDLLARA 209 (509)
T ss_pred HHHHHHHHhccC--CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 477888888543 456777777888888888887 54 3678999999999999999988887777654 47788888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006535 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 536 T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl 572 (641)
+.| +.+++.++++.+... +...|+.+++.+.+
T Consensus 210 s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 210 ANG-SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred cCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 876 889999999887543 23467777766554
No 73
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.68 E-value=1.1e-15 Score=153.11 Aligned_cols=205 Identities=17% Similarity=0.231 Sum_probs=138.0
Q ss_pred cccccccc--CChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHH
Q 006535 328 TITFADVA--GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (641)
Q Consensus 328 ~vtf~DV~--G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~ 402 (641)
..+|++.+ +.+.+.+.+++++. ...+.+++|+||||||||++|++++.++ +.+++++++.++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 45777776 34455555555542 1345689999999999999999999876 5789999998876
Q ss_pred HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC
Q 006535 403 ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd 482 (641)
... .+++... ..+.+|+|||+|.+.... +....+..++..+. .....+|++++..+.
T Consensus 79 ~~~--------~~~~~~~--~~~~lLvIDdi~~l~~~~----------~~~~~L~~~l~~~~---~~~~~iIits~~~~~ 135 (226)
T TIGR03420 79 QAD--------PEVLEGL--EQADLVCLDDVEAIAGQP----------EWQEALFHLYNRVR---EAGGRLLIAGRAAPA 135 (226)
T ss_pred HhH--------HHHHhhc--ccCCEEEEeChhhhcCCh----------HHHHHHHHHHHHHH---HcCCeEEEECCCChH
Confidence 432 2233322 224599999999885321 11122333333332 122334444444444
Q ss_pred CCC---hhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Q 006535 483 VLD---PALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGR 557 (641)
Q Consensus 483 ~LD---~ALlRpgRF--d~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r 557 (641)
.++ +.+.+ || ..++.+++|+.+++..+++.++.+.++.+++++ +..|+... +-+.++|.++++++...+..
T Consensus 136 ~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~-l~~L~~~~-~gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 136 QLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEV-ADYLLRHG-SRDMGSLMALLDALDRASLA 211 (226)
T ss_pred HCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhc-cCCHHHHHHHHHHHHHHHHH
Confidence 332 67776 55 578999999999999999988877777777664 78888864 45999999999998876655
Q ss_pred cCCccccHHHHHHHH
Q 006535 558 LNKVVVEKIDFIHAV 572 (641)
Q Consensus 558 ~~~~~It~~d~~eAl 572 (641)
.+ ..|+.+.+.+.+
T Consensus 212 ~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 212 AK-RKITIPFVKEVL 225 (226)
T ss_pred hC-CCCCHHHHHHHh
Confidence 44 568888777654
No 74
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.68 E-value=2e-15 Score=171.07 Aligned_cols=226 Identities=19% Similarity=0.226 Sum_probs=151.7
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEeehhh
Q 006535 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (641)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-----g~pfi~vs~se 400 (641)
.+..+|++++.-+.-......+.....++. ...+.++|||++|+|||+|++|+++++ +..++++++.+
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~~~-------~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee 354 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEAPA-------KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE 354 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhCcc-------ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 356789998643332222222222222221 123459999999999999999999976 56889999999
Q ss_pred HHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCC
Q 006535 401 FVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (641)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~ 480 (641)
|.+.+.........+.|..... .+++|+||||+.+..+.. ....+-.++..+. .+.+-+||++...
T Consensus 355 f~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke~----------tqeeLF~l~N~l~---e~gk~IIITSd~~ 420 (617)
T PRK14086 355 FTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKES----------TQEEFFHTFNTLH---NANKQIVLSSDRP 420 (617)
T ss_pred HHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCHH----------HHHHHHHHHHHHH---hcCCCEEEecCCC
Confidence 9877654432222333443333 467999999999864321 1112222333322 2233345544433
Q ss_pred C---CCCChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 006535 481 S---DVLDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 481 p---d~LD~ALlRpgRF--d~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A 555 (641)
| ..+++.|.+ || ...+.+..||.+.|.+||+.++..+++.+.+++ ++.|+.+..+ +.++|+.++++....|
T Consensus 421 P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eV-i~yLa~r~~r-nvR~LegaL~rL~a~a 496 (617)
T PRK14086 421 PKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEV-LEFIASRISR-NIRELEGALIRVTAFA 496 (617)
T ss_pred hHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 3 357888988 76 567899999999999999999998889888875 8888888765 8899999999887666
Q ss_pred HhcCCccccHHHHHHHHHHHhc
Q 006535 556 GRLNKVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 556 ~r~~~~~It~~d~~eAl~rvi~ 577 (641)
...+ ..|+.+.+++.++..+.
T Consensus 497 ~~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 497 SLNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HhhC-CCCCHHHHHHHHHHhhc
Confidence 5544 55888888888876544
No 75
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.67 E-value=1.4e-15 Score=180.24 Aligned_cols=202 Identities=24% Similarity=0.341 Sum_probs=150.2
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc----------CCCeEEeeh
Q 006535 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSA 398 (641)
Q Consensus 329 vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------g~pfi~vs~ 398 (641)
-.+++++|.++..+.+.+++. .+.+++++|+||||||||++|+++|.+. +.+++.++.
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILG------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHc------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 458899999998887776653 2345689999999999999999999975 478999999
Q ss_pred hhHH--HHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEE
Q 006535 399 SEFV--ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (641)
Q Consensus 399 se~~--~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIa 476 (641)
+.++ ..|.|+.+.+++.+|+.+....++||||||||.|.+.++.. +..+ .-+-|...+. ++.+.+|+
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---g~~~----~a~lLkp~l~----rg~l~~Ig 312 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE---GAID----AANILKPALA----RGELQCIG 312 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC---Cccc----HHHHhHHHHh----CCCcEEEE
Confidence 8887 36788889999999999988889999999999998654321 1111 1122222232 56689999
Q ss_pred ecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc----CCCCCCCCCCHHHHHHhCCCCC-----HH
Q 006535 477 ATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK----KELPLAKDIDLGDIASMTTGFT-----GA 542 (641)
Q Consensus 477 ATN~pd-----~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~----~~l~l~~dvdl~~LA~~T~GfS-----ga 542 (641)
+|+..+ ..|+++.+ ||. .|.++.|+.++...|++..... .++.+.+++ +..++..+.+|. |.
T Consensus 313 aTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~dea-l~~i~~ls~~yi~~r~lPd 388 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKA-LEAAAKLSDQYIADRFLPD 388 (821)
T ss_pred eCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHhhccCccccCch
Confidence 998763 47999999 996 6899999999999998765432 234444443 666677666653 56
Q ss_pred HHHHHHHHHHHHHHh
Q 006535 543 DLANLVNEAALLAGR 557 (641)
Q Consensus 543 DL~~Lv~eAal~A~r 557 (641)
....++++|+.....
T Consensus 389 kaidlld~a~a~~~~ 403 (821)
T CHL00095 389 KAIDLLDEAGSRVRL 403 (821)
T ss_pred HHHHHHHHHHHHHHh
Confidence 677889988876544
No 76
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.67 E-value=1.8e-15 Score=175.94 Aligned_cols=213 Identities=21% Similarity=0.289 Sum_probs=147.1
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006535 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~ 402 (641)
.+...+.+|+|++|+++.......+...+.. ....++||+||||||||++|+++|+..+.+|+.+++...
T Consensus 19 aek~RP~tldd~vGQe~ii~~~~~L~~~i~~---------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~- 88 (725)
T PRK13341 19 ADRLRPRTLEEFVGQDHILGEGRLLRRAIKA---------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA- 88 (725)
T ss_pred HHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc---------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-
Confidence 4455678999999999988542222222221 123469999999999999999999999999998887521
Q ss_pred HHHhhcchHHHHHHHHHHH-----hcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEe
Q 006535 403 ELYVGMGASRVRDLFARAK-----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (641)
Q Consensus 403 ~~~vG~~~~~vr~lF~~A~-----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaA 477 (641)
+...+++.+..+. .....+|||||||.+....+ +.|+..++ ...+++|++
T Consensus 89 ------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQ---------------daLL~~lE----~g~IiLI~a 143 (725)
T PRK13341 89 ------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQ---------------DALLPWVE----NGTITLIGA 143 (725)
T ss_pred ------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHH---------------HHHHHHhc----CceEEEEEe
Confidence 2233444444442 12456999999999854321 34555554 345777776
Q ss_pred cC--CCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHh-------cCCCCCCCCCCHHHHHHhCCCCCHHHHHHHH
Q 006535 478 TN--RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS-------KKELPLAKDIDLGDIASMTTGFTGADLANLV 548 (641)
Q Consensus 478 TN--~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~-------~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv 548 (641)
|+ ....+++++++ |. ..+.+++++.+++..+++..+. ..++.++++ .++.|++...| +.+++.+++
T Consensus 144 TTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~de-aL~~La~~s~G-D~R~lln~L 218 (725)
T PRK13341 144 TTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPE-AEKHLVDVANG-DARSLLNAL 218 (725)
T ss_pred cCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHH-HHHHHHHhCCC-CHHHHHHHH
Confidence 63 33578899998 53 4689999999999999999886 334555555 37888888765 788899998
Q ss_pred HHHHHHHHhcC--CccccHHHHHHHHHHH
Q 006535 549 NEAALLAGRLN--KVVVEKIDFIHAVERS 575 (641)
Q Consensus 549 ~eAal~A~r~~--~~~It~~d~~eAl~rv 575 (641)
+.|+..+.... ...|+.+++.+++.+.
T Consensus 219 e~a~~~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 219 ELAVESTPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred HHHHHhcccCCCCceeccHHHHHHHHHHh
Confidence 88775443222 2347888888887664
No 77
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.67 E-value=3e-15 Score=165.93 Aligned_cols=227 Identities=18% Similarity=0.214 Sum_probs=149.0
Q ss_pred CCcccccccc-CChHH--HHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehh
Q 006535 326 GDTITFADVA-GVDEA--KEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (641)
Q Consensus 326 ~~~vtf~DV~-G~ee~--K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~s 399 (641)
.+..||++.+ |.... ...++++. .++. .......++++||||+|+|||+|++++++++ +..++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a---~~~~---~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFT---KVSE---QGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHH---hccc---cccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 4567899976 54322 12223332 2111 0011233679999999999999999999875 6889999998
Q ss_pred hHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006535 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN 479 (641)
+|...+...-...-.+.|.... ..+++|+|||++.+.++.. ..++.-.++|.+.. ....+|++++.
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~------~qeelf~l~N~l~~-------~~k~IIlts~~ 244 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA------TQEEFFHTFNSLHT-------EGKLIVISSTC 244 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh------hHHHHHHHHHHHHH-------CCCcEEEecCC
Confidence 8876544321111112344333 3456999999999854321 22233334444332 22345555555
Q ss_pred CCC---CCChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHH-
Q 006535 480 RSD---VLDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL- 553 (641)
Q Consensus 480 ~pd---~LD~ALlRpgRFd--~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal- 553 (641)
.|. .++++|.+ ||. ..+.+.+|+.++|.+||+..+...++.+++++ ++.|+....+ +.++|.+.++..+.
T Consensus 245 ~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~ev-l~~la~~~~~-dir~L~g~l~~l~~~ 320 (445)
T PRK12422 245 APQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETA-LDFLIEALSS-NVKSLLHALTLLAKR 320 (445)
T ss_pred CHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 553 56788888 884 78899999999999999999988888887765 7778887765 78999999888752
Q ss_pred --HHHhcCCccccHHHHHHHHHHHhc
Q 006535 554 --LAGRLNKVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 554 --~A~r~~~~~It~~d~~eAl~rvi~ 577 (641)
.+.. ....|+.+++.+++...+.
T Consensus 321 ~a~~~~-~~~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 321 VAYKKL-SHQLLYVDDIKALLHDVLE 345 (445)
T ss_pred HHHHHh-hCCCCCHHHHHHHHHHhhh
Confidence 2222 2356899999998877543
No 78
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=2e-15 Score=168.24 Aligned_cols=204 Identities=18% Similarity=0.213 Sum_probs=154.9
Q ss_pred CCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCC-------------
Q 006535 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV------------- 391 (641)
Q Consensus 325 ~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~------------- 391 (641)
...+.+|+||+|++.+++.|+..+.. .+.|.++||+||||+|||++|+.+|..+++
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 34567999999999999988876642 356778999999999999999999986543
Q ss_pred -----------CeEEeehhhHHHHHhhcchHHHHHHHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHHH
Q 006535 392 -----------PFISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (641)
Q Consensus 392 -----------pfi~vs~se~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (641)
.++.+++++ ..+...+|++.+.+... ...|++|||+|.|.. ...
T Consensus 75 ~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~---------------~A~ 133 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN---------------SAF 133 (491)
T ss_pred HHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH---------------HHH
Confidence 233343321 22456688887776532 345999999998842 245
Q ss_pred HHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhC
Q 006535 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (641)
Q Consensus 457 nqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T 536 (641)
|.|+..|+... ..+++|.+|+.++.+.+.+++ |. ..+.+.+++.++..+.+...+.+.++.++++ .+..|++.+
T Consensus 134 NaLLK~LEePp--~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~e-AL~lIa~~s 207 (491)
T PRK14964 134 NALLKTLEEPA--PHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEE-SLKLIAENS 207 (491)
T ss_pred HHHHHHHhCCC--CCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 78888888533 457777778888889999988 65 4789999999999999999998888877666 478888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 006535 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (641)
Q Consensus 537 ~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eA 571 (641)
.| +.+++.++++.+...+. ..||.+++.+.
T Consensus 208 ~G-slR~alslLdqli~y~~----~~It~e~V~~l 237 (491)
T PRK14964 208 SG-SMRNALFLLEQAAIYSN----NKISEKSVRDL 237 (491)
T ss_pred CC-CHHHHHHHHHHHHHhcC----CCCCHHHHHHH
Confidence 76 88999999998876542 36788777764
No 79
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.66 E-value=1.4e-15 Score=180.29 Aligned_cols=218 Identities=21% Similarity=0.285 Sum_probs=153.6
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc----------CCCeEEe
Q 006535 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (641)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------g~pfi~v 396 (641)
.+-++++++|+++..+ ++++.+.. +...+++|+||||||||++|+.+|... +..++.+
T Consensus 182 r~~~ld~~iGr~~ei~---~~i~~l~r---------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 182 REGKIDPVLGRDDEIR---QMIDILLR---------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred cCCCCCcccCCHHHHH---HHHHHHhc---------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 4557899999999644 44443322 223478999999999999999999875 3457788
Q ss_pred ehhhHHH--HHhhcchHHHHHHHHHHHh-cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEE
Q 006535 397 SASEFVE--LYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (641)
Q Consensus 397 s~se~~~--~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~Vi 473 (641)
+.+.+.. .+.|+.+.+++.+|+.++. ..++||||||||.+.+.++.. +..+ .-|.|+-.+. ++.+.
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~---~~~d----~~n~Lkp~l~----~G~l~ 318 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA---GQGD----AANLLKPALA----RGELR 318 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc---cccc----HHHHhhHHhh----CCCeE
Confidence 8777663 5788889999999999875 467899999999998655321 1122 1133333333 56799
Q ss_pred EEEecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc----CCCCCCCCCCHHHHHHhCCCCC----
Q 006535 474 VLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK----KELPLAKDIDLGDIASMTTGFT---- 540 (641)
Q Consensus 474 VIaATN~pd-----~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~----~~l~l~~dvdl~~LA~~T~GfS---- 540 (641)
+|+||+..+ .+|+||.| ||. .|.++.|+.+++.+||+.+... .++.+.++ .+..++..+.+|-
T Consensus 319 ~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~-al~~~~~ls~ryi~~r~ 394 (852)
T TIGR03345 319 TIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDE-AVVAAVELSHRYIPGRQ 394 (852)
T ss_pred EEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHH-HHHHHHHHccccccccc
Confidence 999998643 58999999 996 8999999999999998665543 23444444 4777777777663
Q ss_pred -HHHHHHHHHHHHHHHHhc-CCccccHHHHHHH
Q 006535 541 -GADLANLVNEAALLAGRL-NKVVVEKIDFIHA 571 (641)
Q Consensus 541 -gaDL~~Lv~eAal~A~r~-~~~~It~~d~~eA 571 (641)
|.....++++|+...... ....+..+++.+.
T Consensus 395 LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~ 427 (852)
T TIGR03345 395 LPDKAVSLLDTACARVALSQNATPAALEDLRRR 427 (852)
T ss_pred CccHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence 566788999987655432 3333344444433
No 80
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.66 E-value=3.4e-15 Score=158.03 Aligned_cols=212 Identities=19% Similarity=0.224 Sum_probs=139.7
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC-----CCeEEeeh
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSA 398 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg-----~pfi~vs~ 398 (641)
+...+.+|++++|++++++.|.+++.. ....++||+||||||||++|+++++++. .+++.+++
T Consensus 7 ~ky~P~~~~~~~g~~~~~~~L~~~~~~------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 7 EKYRPALLEDILGQDEVVERLSRAVDS------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred HhhCCCcHHHhcCCHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 344567899999999999988887642 1123699999999999999999999873 45788888
Q ss_pred hhHHHHH-------------hhc-------chHHHHHHHHHHHh-----cCCceEEEcchhhhhhhcCCcccccchhHHH
Q 006535 399 SEFVELY-------------VGM-------GASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDERE 453 (641)
Q Consensus 399 se~~~~~-------------vG~-------~~~~vr~lF~~A~~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~ 453 (641)
+++.... .+. ....++.+...... ..+.+|+|||+|.+...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~-------------- 140 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED-------------- 140 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH--------------
Confidence 7764321 010 11233333333322 22459999999987421
Q ss_pred HHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHH
Q 006535 454 QTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIA 533 (641)
Q Consensus 454 ~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA 533 (641)
..+.|...++..... ..+|.+++.+..+.+.+.+ |. ..+.+.+|+.++...+++..+.+.++.++++ .++.++
T Consensus 141 -~~~~L~~~le~~~~~--~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-al~~l~ 213 (337)
T PRK12402 141 -AQQALRRIMEQYSRT--CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDD-GLELIA 213 (337)
T ss_pred -HHHHHHHHHHhccCC--CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Confidence 123344445443332 3344455556667777877 54 4789999999999999999998888777655 478888
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 006535 534 SMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (641)
Q Consensus 534 ~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~r 574 (641)
..+.| +.+++.+.++ ..+. ....||.+++.+++.+
T Consensus 214 ~~~~g-dlr~l~~~l~---~~~~--~~~~It~~~v~~~~~~ 248 (337)
T PRK12402 214 YYAGG-DLRKAILTLQ---TAAL--AAGEITMEAAYEALGD 248 (337)
T ss_pred HHcCC-CHHHHHHHHH---HHHH--cCCCCCHHHHHHHhCC
Confidence 87743 5455444444 3332 2236999988876653
No 81
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=3.1e-15 Score=168.00 Aligned_cols=205 Identities=20% Similarity=0.262 Sum_probs=149.9
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----------
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p----------- 392 (641)
....+.+|+||+|++++++.|+..+.. .+.|..+||+||||||||++|+++|..+.+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 455678999999999999999888763 2456668999999999999999999987531
Q ss_pred ------------eEEeehhhHHHHHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHH
Q 006535 393 ------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (641)
Q Consensus 393 ------------fi~vs~se~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (641)
++.++.+ ...+...++++.+.+.. ..+.||+|||+|.+. ...+
T Consensus 75 sc~~i~~~~h~dv~el~~~------~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls---------------~~a~ 133 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAA------SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS---------------KSAF 133 (504)
T ss_pred hhHHHhcCCCCceEEeccc------ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccC---------------HHHH
Confidence 2233321 11234556666554432 345699999998763 2345
Q ss_pred HHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhC
Q 006535 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (641)
Q Consensus 457 nqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T 536 (641)
+.|+..|+.. ...+++|.+|+.+..+.+.+.+ |. ..+.|.+|+.++..+.++..+.+.++.++++ .+..|+..+
T Consensus 134 naLLk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~-Al~~ia~~s 207 (504)
T PRK14963 134 NALLKTLEEP--PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPE-ALQLVARLA 207 (504)
T ss_pred HHHHHHHHhC--CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 7788888743 2456777778888899999988 65 3789999999999999999998888777655 478888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006535 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 537 ~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl 572 (641)
.| +.+++.++++.+... ...||.+++.+.+
T Consensus 208 ~G-dlR~aln~Lekl~~~-----~~~It~~~V~~~l 237 (504)
T PRK14963 208 DG-AMRDAESLLERLLAL-----GTPVTRKQVEEAL 237 (504)
T ss_pred CC-CHHHHHHHHHHHHhc-----CCCCCHHHHHHHH
Confidence 76 777777777776432 2357877766653
No 82
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.6e-15 Score=174.78 Aligned_cols=198 Identities=20% Similarity=0.247 Sum_probs=143.7
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe-------EE
Q 006535 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------IS 395 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pf-------i~ 395 (641)
.++.++.+|+||+|++.+++.|+.++.. .+.+..+||+||||||||++|+++|+.+++.- ..
T Consensus 7 aeKyRP~tFddIIGQe~Iv~~LknaI~~-----------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~ 75 (944)
T PRK14949 7 ARKWRPATFEQMVGQSHVLHALTNALTQ-----------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGV 75 (944)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCC
Confidence 3455678999999999999998877752 24566789999999999999999999987641 11
Q ss_pred e-ehhhHHHH-------Hh---hcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHH
Q 006535 396 C-SASEFVEL-------YV---GMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (641)
Q Consensus 396 v-s~se~~~~-------~v---G~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL 460 (641)
| +|-.+.+. +. ..+...+|++.+.+.. ....|+||||+|.|.. ...|.||
T Consensus 76 C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~---------------eAqNALL 140 (944)
T PRK14949 76 CSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR---------------SSFNALL 140 (944)
T ss_pred chHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH---------------HHHHHHH
Confidence 1 11111110 00 1233456766655532 2335999999999852 3558889
Q ss_pred hhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCC
Q 006535 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (641)
Q Consensus 461 ~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfS 540 (641)
..|+.. ...+++|.+|+.+..|.+.+++ |. .++.|.+++.++..+.|+..+...++.+.++ .+..|+..+.| +
T Consensus 141 KtLEEP--P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~ede-AL~lIA~~S~G-d 213 (944)
T PRK14949 141 KTLEEP--PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAE-ALTLLAKAANG-S 213 (944)
T ss_pred HHHhcc--CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-C
Confidence 988853 3456777778888889999888 54 5789999999999999999887766665544 47788888877 8
Q ss_pred HHHHHHHHHHHHH
Q 006535 541 GADLANLVNEAAL 553 (641)
Q Consensus 541 gaDL~~Lv~eAal 553 (641)
.+++.+++..+..
T Consensus 214 ~R~ALnLLdQala 226 (944)
T PRK14949 214 MRDALSLTDQAIA 226 (944)
T ss_pred HHHHHHHHHHHHH
Confidence 8999999987773
No 83
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=1.5e-15 Score=173.76 Aligned_cols=206 Identities=20% Similarity=0.267 Sum_probs=150.6
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----------
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p----------- 392 (641)
+...+.+|+||+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|..+++.
T Consensus 8 ~KyRP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 334667999999999999988877753 2456668999999999999999999988663
Q ss_pred -------------eEEeehhhHHHHHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHH
Q 006535 393 -------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (641)
Q Consensus 393 -------------fi~vs~se~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (641)
++.+++.. ..+...+|++.+.+.. +...|+||||+|.|.. ..
T Consensus 77 ~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~---------------~a 135 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR---------------HS 135 (647)
T ss_pred HHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH---------------HH
Confidence 12222110 1234556776665532 2345999999999853 34
Q ss_pred HHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 006535 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (641)
Q Consensus 456 LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~ 535 (641)
.|.||..|+. ....+++|.+|+.+..|.+.+++ |. ..+.|..++.++..+.|+..+...++..+++ .+..|+..
T Consensus 136 ~NALLKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~-aL~~Ia~~ 209 (647)
T PRK07994 136 FNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPR-ALQLLARA 209 (647)
T ss_pred HHHHHHHHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 5888998884 34467777788888899999988 64 6899999999999999999887777666544 47788888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006535 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 536 T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl 572 (641)
+.| +.++..++++.|... +...|+.+++.+.+
T Consensus 210 s~G-s~R~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 210 ADG-SMRDALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred cCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 877 889999998876543 22346665555443
No 84
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.66 E-value=3.9e-15 Score=150.09 Aligned_cols=202 Identities=16% Similarity=0.190 Sum_probs=136.8
Q ss_pred Ccccccccc--CChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhH
Q 006535 327 DTITFADVA--GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (641)
Q Consensus 327 ~~vtf~DV~--G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~ 401 (641)
++.+|++++ +.+++...++++.. +...+.+++|+||+|||||+||+++++++ +.+++++++.++
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 457888877 33444444444433 22345679999999999999999999875 678888988776
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcE-EEEEecCC
Q 006535 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV-IVLGATNR 480 (641)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~V-iVIaATN~ 480 (641)
.... . ......+|+|||+|.+.... ...+..++..+ ...... ++++++..
T Consensus 82 ~~~~------------~--~~~~~~~liiDdi~~l~~~~------------~~~L~~~~~~~---~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 82 LLAF------------D--FDPEAELYAVDDVERLDDAQ------------QIALFNLFNRV---RAHGQGALLVAGPAA 132 (227)
T ss_pred HHHH------------h--hcccCCEEEEeChhhcCchH------------HHHHHHHHHHH---HHcCCcEEEEeCCCC
Confidence 4321 1 12245699999999874221 12233333332 223343 44444433
Q ss_pred C--CCCChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 006535 481 S--DVLDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAG 556 (641)
Q Consensus 481 p--d~LD~ALlRpgRF--d~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~ 556 (641)
+ ..+.+.|.+ || ...+.+++|+.+++..+++....+.++.+++++ ++.|++..+| +.++|.++++.....|.
T Consensus 133 ~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~a-l~~L~~~~~g-n~~~l~~~l~~l~~~~~ 208 (227)
T PRK08903 133 PLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEV-PDYLLTHFRR-DMPSLMALLDALDRYSL 208 (227)
T ss_pred HHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 3 235677776 65 578999999999999999988877788887764 7888886655 99999999998665554
Q ss_pred hcCCccccHHHHHHHHH
Q 006535 557 RLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 557 r~~~~~It~~d~~eAl~ 573 (641)
. .+..||...+.+++.
T Consensus 209 ~-~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 209 E-QKRPVTLPLLREMLA 224 (227)
T ss_pred H-hCCCCCHHHHHHHHh
Confidence 4 346889888877764
No 85
>PLN03025 replication factor C subunit; Provisional
Probab=99.65 E-value=2.6e-15 Score=159.51 Aligned_cols=202 Identities=21% Similarity=0.233 Sum_probs=138.2
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC-----CCeEEeeh
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSA 398 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg-----~pfi~vs~ 398 (641)
+...+.+|+|++|++++.+.|+.++.. ...| ++||+||||||||++|+++|+++. ..++.++.
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~-----------~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARD-----------GNMP-NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhc-----------CCCc-eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 345678999999999999988877642 1222 599999999999999999999973 23556666
Q ss_pred hhHHHHHhhcchHHHHHHHHHHHh-------cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCc
Q 006535 399 SEFVELYVGMGASRVRDLFARAKK-------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA 471 (641)
Q Consensus 399 se~~~~~vG~~~~~vr~lF~~A~~-------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ 471 (641)
++.. +...+++..+.... ..+.|++|||+|.+.... .+.|+..|+.+.. .
T Consensus 73 sd~~------~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~a---------------q~aL~~~lE~~~~--~ 129 (319)
T PLN03025 73 SDDR------GIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGA---------------QQALRRTMEIYSN--T 129 (319)
T ss_pred cccc------cHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHH---------------HHHHHHHHhcccC--C
Confidence 5432 12234444332211 235699999999985432 2445666654433 2
Q ss_pred EEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHH
Q 006535 472 VIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEA 551 (641)
Q Consensus 472 ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eA 551 (641)
..+|.++|.+..+.+++++ |. ..+.+++|+.++....++..+++.++.++++ .+..++....| +.+.+.+.++.+
T Consensus 130 t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~-~l~~i~~~~~g-DlR~aln~Lq~~ 204 (319)
T PLN03025 130 TRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPE-GLEAIIFTADG-DMRQALNNLQAT 204 (319)
T ss_pred ceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHH
Confidence 3456677888888899988 54 4789999999999999999998888888766 47888887665 555555555522
Q ss_pred HHHHHhcCCccccHHHHHH
Q 006535 552 ALLAGRLNKVVVEKIDFIH 570 (641)
Q Consensus 552 al~A~r~~~~~It~~d~~e 570 (641)
+. +...|+.+++.+
T Consensus 205 ---~~--~~~~i~~~~v~~ 218 (319)
T PLN03025 205 ---HS--GFGFVNQENVFK 218 (319)
T ss_pred ---Hh--cCCCCCHHHHHH
Confidence 21 234577666654
No 86
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=2.2e-15 Score=172.30 Aligned_cols=213 Identities=19% Similarity=0.249 Sum_probs=153.6
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe-------EEe
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISC 396 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pf-------i~v 396 (641)
++..+.+|+||+|++.+++.|+..+.. .+.+.++||+||+|+|||++|+++|++++++- -.+
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 345677999999999999998888752 35677899999999999999999999876531 111
Q ss_pred -ehhhHHH----------HHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHh
Q 006535 397 -SASEFVE----------LYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (641)
Q Consensus 397 -s~se~~~----------~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~ 461 (641)
+|..+.. .....+...++++++.+.. ....||||||+|.|.. ...+.||.
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~---------------~A~NALLK 141 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK---------------SAFNAMLK 141 (709)
T ss_pred HHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH---------------HHHHHHHH
Confidence 0111100 0112344567888776532 2345999999998742 23477888
Q ss_pred hhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCH
Q 006535 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (641)
Q Consensus 462 emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSg 541 (641)
.|+... ..+.+|.+|+.+..+.+.+++ |+ ..+.|..++.++...+|+..+.+.++.++++ .+..|++.+.| +.
T Consensus 142 tLEEPp--~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~e-AL~~Ia~~A~G-sl 214 (709)
T PRK08691 142 TLEEPP--EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPP-ALQLLGRAAAG-SM 214 (709)
T ss_pred HHHhCC--CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHhCC-CH
Confidence 887533 456777778888888888886 65 3678889999999999999998888777655 47888888876 89
Q ss_pred HHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 006535 542 ADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 542 aDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~ 573 (641)
+++.++++.+.... ...|+.+++...+.
T Consensus 215 RdAlnLLDqaia~g----~g~It~e~V~~lLG 242 (709)
T PRK08691 215 RDALSLLDQAIALG----SGKVAENDVRQMIG 242 (709)
T ss_pred HHHHHHHHHHHHhc----CCCcCHHHHHHHHc
Confidence 99999998877642 34577776666543
No 87
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.65 E-value=4.6e-15 Score=158.51 Aligned_cols=207 Identities=21% Similarity=0.267 Sum_probs=150.4
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----------
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p----------- 392 (641)
+..++.+|+|++|++++++.|.+.+.. .+.|..+||+||||+|||++|+++|..+.++
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 445678999999999999988887742 2456679999999999999999999986432
Q ss_pred -------------eEEeehhhHHHHHhhcchHHHHHHHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHH
Q 006535 393 -------------FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (641)
Q Consensus 393 -------------fi~vs~se~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (641)
++.+++.. ..+...++++++.+... ...||+|||+|.+.. ..
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~---------------~~ 133 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK---------------SA 133 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH---------------HH
Confidence 22222210 12334577777776532 234999999998742 23
Q ss_pred HHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 006535 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (641)
Q Consensus 456 LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~ 535 (641)
.+.|+..++.. ...+++|.+|+.++.+.+++.+ |+ ..+.+++|+.++..++++.++++.++.++++ .+..++..
T Consensus 134 ~~~Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~-a~~~l~~~ 207 (355)
T TIGR02397 134 FNALLKTLEEP--PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDE-ALELIARA 207 (355)
T ss_pred HHHHHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 46778877643 3456777777888888888887 66 4789999999999999999998877777654 46777887
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 006535 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 536 T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~ 573 (641)
+.| +++.+.+.++.+...+ + ..|+.+++.+++.
T Consensus 208 ~~g-~~~~a~~~lekl~~~~---~-~~it~~~v~~~~~ 240 (355)
T TIGR02397 208 ADG-SLRDALSLLDQLISFG---N-GNITYEDVNELLG 240 (355)
T ss_pred cCC-ChHHHHHHHHHHHhhc---C-CCCCHHHHHHHhC
Confidence 765 7788888887776653 2 3488888876653
No 88
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=4.9e-15 Score=168.55 Aligned_cols=205 Identities=21% Similarity=0.258 Sum_probs=152.9
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----------
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p----------- 392 (641)
....+.+|+||+|++++.+.|+..+.. .+.++.+||+||+|||||++|+.+|..++++
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 344677999999999999988888753 2456679999999999999999999987532
Q ss_pred -------------eEEeehhhHHHHHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHH
Q 006535 393 -------------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (641)
Q Consensus 393 -------------fi~vs~se~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (641)
++.++++ .+.+...++++.+.+.. ....|++|||+|.|.. ..
T Consensus 77 ~~C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~---------------~a 135 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST---------------GA 135 (559)
T ss_pred HHHHHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HH
Confidence 2222221 12345667888877653 2235999999998842 24
Q ss_pred HHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 006535 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (641)
Q Consensus 456 LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~ 535 (641)
.|.|+..++.. ...+++|.+|+.++.+.+.+++ |.. .+.|.+|+.++....++..+.+.++.++++ .+..++..
T Consensus 136 ~naLLKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~-al~~ia~~ 209 (559)
T PRK05563 136 FNALLKTLEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDE-ALRLIARA 209 (559)
T ss_pred HHHHHHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 57888888743 4456777777788999999987 654 688999999999999999998878777655 47788888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 006535 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (641)
Q Consensus 536 T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eA 571 (641)
+.| +.+++.++++.+...+ ...|+.+++.+.
T Consensus 210 s~G-~~R~al~~Ldq~~~~~----~~~It~~~V~~v 240 (559)
T PRK05563 210 AEG-GMRDALSILDQAISFG----DGKVTYEDALEV 240 (559)
T ss_pred cCC-CHHHHHHHHHHHHHhc----cCCCCHHHHHHH
Confidence 876 8899988888876553 345777666544
No 89
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=5.8e-15 Score=168.61 Aligned_cols=212 Identities=16% Similarity=0.237 Sum_probs=151.1
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----------
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p----------- 392 (641)
+...+.+|+||+|++.+++.|..++.. .+.+..+||+||+|||||++|+++|+.+++.
T Consensus 8 ~KyRP~~f~dviGQe~vv~~L~~~l~~-----------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 8 RKYRPRSFSEMVGQEHVVQALTNALTQ-----------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 344667899999999999988888763 2456678999999999999999999988651
Q ss_pred -eEEe-ehhhH--------HHH--HhhcchHHHHHHHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHHH
Q 006535 393 -FISC-SASEF--------VEL--YVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (641)
Q Consensus 393 -fi~v-s~se~--------~~~--~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (641)
.-.| +|..+ .+. ....+...+|++.+.+... ...|++|||+|.|... ..
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~---------------a~ 141 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT---------------AF 141 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH---------------HH
Confidence 1011 11111 110 0112345677777765432 2349999999998532 35
Q ss_pred HHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhC
Q 006535 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMT 536 (641)
Q Consensus 457 nqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T 536 (641)
|.|+..|+. ....+++|.+|+.+..+.+.+++ |. ..+.|..++.++..+.|+..+.+.++.++++ .+..|++.+
T Consensus 142 NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~-AL~~La~~s 215 (618)
T PRK14951 142 NAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQ-ALRLLARAA 215 (618)
T ss_pred HHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc
Confidence 778888874 33456777777778888888888 54 5889999999999999999998888777654 478888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006535 537 TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 537 ~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl 572 (641)
.| +.+++.++++.+.... ...|+.+++.+.+
T Consensus 216 ~G-slR~al~lLdq~ia~~----~~~It~~~V~~~L 246 (618)
T PRK14951 216 RG-SMRDALSLTDQAIAFG----SGQLQEAAVRQML 246 (618)
T ss_pred CC-CHHHHHHHHHHHHHhc----CCCcCHHHHHHHH
Confidence 77 8899999887776542 3457766665543
No 90
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.64 E-value=1.8e-14 Score=146.98 Aligned_cols=206 Identities=14% Similarity=0.137 Sum_probs=135.4
Q ss_pred Ccccccccc-C-ChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhH
Q 006535 327 DTITFADVA-G-VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (641)
Q Consensus 327 ~~vtf~DV~-G-~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~ 401 (641)
+..+|++.+ | ...+...+.++.. . ..+..++|+||||||||+|++++++++ +....+++..+.
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l~~~~~---~---------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAALQNALR---Q---------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred CcCCccccccCccHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 455788876 4 3444444444432 1 123479999999999999999999875 344556665543
Q ss_pred HHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCc-EEEEEecCC
Q 006535 402 VELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSA-VIVLGATNR 480 (641)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~-ViVIaATN~ 480 (641)
... ..++++.... ..+|+|||+|.+..+. ..++.+-.++..+- ...+ .+++++++.
T Consensus 85 ~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~----------~~~~~lf~l~n~~~---e~g~~~li~ts~~~ 141 (235)
T PRK08084 85 AWF--------VPEVLEGMEQ--LSLVCIDNIECIAGDE----------LWEMAIFDLYNRIL---ESGRTRLLITGDRP 141 (235)
T ss_pred hhh--------hHHHHHHhhh--CCEEEEeChhhhcCCH----------HHHHHHHHHHHHHH---HcCCCeEEEeCCCC
Confidence 221 1122222211 2589999999985322 22333333333321 1222 355556666
Q ss_pred CCC---CChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 006535 481 SDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 481 pd~---LD~ALlRpgRFd--~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A 555 (641)
|.. +.|.|.+ |+. .++.+.+|+.+++.++++..+..+++.+++++ ++.|+.+.+| +.+.+.++++.....+
T Consensus 142 p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v-~~~L~~~~~~-d~r~l~~~l~~l~~~~ 217 (235)
T PRK08084 142 PRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDV-GRFLLKRLDR-EMRTLFMTLDQLDRAS 217 (235)
T ss_pred hHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhhcC-CHHHHHHHHHHHHHHH
Confidence 655 5789988 764 78999999999999999998877788888875 8889998887 8999999999864343
Q ss_pred HhcCCccccHHHHHHHH
Q 006535 556 GRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 556 ~r~~~~~It~~d~~eAl 572 (641)
.. .+..||...+.+++
T Consensus 218 l~-~~~~it~~~~k~~l 233 (235)
T PRK08084 218 IT-AQRKLTIPFVKEIL 233 (235)
T ss_pred Hh-cCCCCCHHHHHHHH
Confidence 33 34558888777765
No 91
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.63 E-value=1.5e-14 Score=152.66 Aligned_cols=206 Identities=19% Similarity=0.253 Sum_probs=134.0
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~ 403 (641)
+...+.+|+|++|++++++.+...+.. ...|..+||+||||+|||++|++++++.+.+++.+++++ ..
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~ 80 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CR 80 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-cc
Confidence 455678999999999999988887751 234666777999999999999999999999999998876 11
Q ss_pred HHhhcchHHHHHHHHHHH-hcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC
Q 006535 404 LYVGMGASRVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 404 ~~vG~~~~~vr~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd 482 (641)
.......+........ ...+.+|+|||+|.+... +....+ ...++... .++.+|.+||.++
T Consensus 81 --~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~-----------~~~~~L---~~~le~~~--~~~~~Ilt~n~~~ 142 (316)
T PHA02544 81 --IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA-----------DAQRHL---RSFMEAYS--KNCSFIITANNKN 142 (316)
T ss_pred --HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH-----------HHHHHH---HHHHHhcC--CCceEEEEcCChh
Confidence 1111111222111111 134679999999987311 112223 33344333 3467778999999
Q ss_pred CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHh-------cCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 006535 483 VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS-------KKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 483 ~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~-------~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A 555 (641)
.+++++++ ||. .+.++.|+.+++.++++..+. +.+.++.++ .+..++....| |++.+++.....+
T Consensus 143 ~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~-al~~l~~~~~~----d~r~~l~~l~~~~ 214 (316)
T PHA02544 143 GIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMK-VLAALVKKNFP----DFRRTINELQRYA 214 (316)
T ss_pred hchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCC----CHHHHHHHHHHHH
Confidence 99999998 875 789999999999877665432 345555444 25666665543 4555555444443
Q ss_pred HhcCCccccHHHHHH
Q 006535 556 GRLNKVVVEKIDFIH 570 (641)
Q Consensus 556 ~r~~~~~It~~d~~e 570 (641)
. ...++.+++..
T Consensus 215 ~---~~~i~~~~l~~ 226 (316)
T PHA02544 215 S---TGKIDAGILSE 226 (316)
T ss_pred c---cCCCCHHHHHH
Confidence 2 23466655444
No 92
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.62 E-value=1e-14 Score=153.53 Aligned_cols=213 Identities=29% Similarity=0.409 Sum_probs=145.2
Q ss_pred cccCCCccccccccCChHHHHH---HHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC---eEE
Q 006535 322 VSEQGDTITFADVAGVDEAKEE---LEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---FIS 395 (641)
Q Consensus 322 ~~~~~~~vtf~DV~G~ee~K~~---L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p---fi~ 395 (641)
..+...+-+++|.+|+++...+ |+.+++.- +. ..++||||||||||+||+.++....-+ |+.
T Consensus 128 LaermRPktL~dyvGQ~hlv~q~gllrs~ieq~-----------~i-pSmIlWGppG~GKTtlArlia~tsk~~Syrfve 195 (554)
T KOG2028|consen 128 LAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQN-----------RI-PSMILWGPPGTGKTTLARLIASTSKKHSYRFVE 195 (554)
T ss_pred hhhhcCcchHHHhcchhhhcCcchHHHHHHHcC-----------CC-CceEEecCCCCchHHHHHHHHhhcCCCceEEEE
Confidence 3455667789999999987754 33333321 22 359999999999999999999988666 777
Q ss_pred eehhhHHHHHhhcchHHHHHHHHHHHh-----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCC
Q 006535 396 CSASEFVELYVGMGASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (641)
Q Consensus 396 vs~se~~~~~vG~~~~~vr~lF~~A~~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~ 470 (641)
++.. ....+.+|++|++++. ....|||||||+.+.+.+++ .||-.++ ++
T Consensus 196 lSAt-------~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD---------------~fLP~VE----~G 249 (554)
T KOG2028|consen 196 LSAT-------NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQD---------------TFLPHVE----NG 249 (554)
T ss_pred Eecc-------ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhh---------------cccceec----cC
Confidence 7763 3456788999999975 34579999999999877653 3444443 56
Q ss_pred cEEEEEec--CCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHh---c---CCCCCCC------CCCHHHHHHhC
Q 006535 471 AVIVLGAT--NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS---K---KELPLAK------DIDLGDIASMT 536 (641)
Q Consensus 471 ~ViVIaAT--N~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~---~---~~l~l~~------dvdl~~LA~~T 536 (641)
.|++|+|| |+.-.|..+|++++| ++.+...+.+.-..||..... + ...++.. +--++.++..+
T Consensus 250 ~I~lIGATTENPSFqln~aLlSRC~---VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~ls 326 (554)
T KOG2028|consen 250 DITLIGATTENPSFQLNAALLSRCR---VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLS 326 (554)
T ss_pred ceEEEecccCCCccchhHHHHhccc---eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhc
Confidence 78999887 556788999999544 788888889999999887543 1 1112222 11256677888
Q ss_pred CCCCHHHHHHHHHHHH-HHHHhc---CCccccHHHHHHHHHHHh
Q 006535 537 TGFTGADLANLVNEAA-LLAGRL---NKVVVEKIDFIHAVERSI 576 (641)
Q Consensus 537 ~GfSgaDL~~Lv~eAa-l~A~r~---~~~~It~~d~~eAl~rvi 576 (641)
+|=.-+-| |.++-++ +...|. .+..++.+|+.+++.+.-
T Consensus 327 dGDaR~aL-N~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~ 369 (554)
T KOG2028|consen 327 DGDARAAL-NALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSH 369 (554)
T ss_pred CchHHHHH-HHHHHHHHHHHhhcCCcccceecHHHHHHHHhhcc
Confidence 77433333 2333221 222232 456788999999887743
No 93
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.1e-14 Score=157.29 Aligned_cols=213 Identities=19% Similarity=0.262 Sum_probs=147.6
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhH--
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF-- 401 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~-- 401 (641)
+...+.+|+|++|++++++.+.+.+.. ...|.++|||||||+|||++|+++|+.+..+.....+..+
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 445678999999999998887777642 2456789999999999999999999987542211111000
Q ss_pred ----HHHHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEE
Q 006535 402 ----VELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (641)
Q Consensus 402 ----~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~Vi 473 (641)
.+.....+...++.+++.+.. ..+.||+|||+|.+.. ..++.|+..++.. ....+
T Consensus 78 ~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~---------------~~~~~ll~~le~~--~~~~~ 140 (367)
T PRK14970 78 NIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS---------------AAFNAFLKTLEEP--PAHAI 140 (367)
T ss_pred ceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH---------------HHHHHHHHHHhCC--CCceE
Confidence 000111234567777776643 2345999999998742 2346677767642 23445
Q ss_pred EEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q 006535 474 VLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (641)
Q Consensus 474 VIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal 553 (641)
+|.+|+.+..+.+++.+ |+ ..+.+++|+.++...++...+.+.++.++++ .++.++..+.| +.+.+.+.++....
T Consensus 141 ~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~-al~~l~~~~~g-dlr~~~~~lekl~~ 215 (367)
T PRK14970 141 FILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDD-ALHIIAQKADG-ALRDALSIFDRVVT 215 (367)
T ss_pred EEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 55566677888899987 54 3789999999999999999888888777665 47888887765 77777777777665
Q ss_pred HHHhcCCccccHHHHHHHHH
Q 006535 554 LAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 554 ~A~r~~~~~It~~d~~eAl~ 573 (641)
.+. .. ||.+++++.+.
T Consensus 216 y~~---~~-it~~~v~~~~~ 231 (367)
T PRK14970 216 FCG---KN-ITRQAVTENLN 231 (367)
T ss_pred hcC---CC-CCHHHHHHHhC
Confidence 542 22 78777766543
No 94
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=8.4e-15 Score=165.57 Aligned_cols=212 Identities=19% Similarity=0.235 Sum_probs=150.4
Q ss_pred CCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe-------EEee
Q 006535 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISCS 397 (641)
Q Consensus 325 ~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pf-------i~vs 397 (641)
...+.+|+||+|++.+++.|...+.. .+.+..+||+||||+|||++|+++|..+++.. -.|+
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~ 77 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS 77 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 34567899999999999988887753 24556789999999999999999999886531 1110
Q ss_pred -hhhHH--------HH--HhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhh
Q 006535 398 -ASEFV--------EL--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (641)
Q Consensus 398 -~se~~--------~~--~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~e 462 (641)
|..+. .. ....+...++++.+.+.. ....|++|||+|.+.. ...|.||..
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~---------------~a~naLLK~ 142 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK---------------SAFNAMLKT 142 (527)
T ss_pred HHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH---------------HHHHHHHHH
Confidence 10000 00 001234567777776643 2235999999998852 234788888
Q ss_pred hcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHH
Q 006535 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (641)
Q Consensus 463 md~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSga 542 (641)
++.. ...+++|.+|+.++.+.+.+++ |. ..+.|..++.++..+.+...+.+.++.++++ .+..|+..+.| +.+
T Consensus 143 LEep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~-al~~la~~s~G-slr 215 (527)
T PRK14969 143 LEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDAT-ALQLLARAAAG-SMR 215 (527)
T ss_pred HhCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHH
Confidence 8853 3456777777778888878877 54 4789999999999999998888777665544 46778888766 889
Q ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 006535 543 DLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 543 DL~~Lv~eAal~A~r~~~~~It~~d~~eAl~ 573 (641)
++.++++.|... +...|+.+++.+.+.
T Consensus 216 ~al~lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 216 DALSLLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred HHHHHHHHHHHh----cCCCcCHHHHHHHHC
Confidence 999999887654 345678777766543
No 95
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.61 E-value=2.1e-14 Score=165.44 Aligned_cols=221 Identities=17% Similarity=0.150 Sum_probs=144.5
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc----------CCCeEEeehhh
Q 006535 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSASE 400 (641)
Q Consensus 331 f~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------g~pfi~vs~se 400 (641)
.+.|+|.++..++|..++..... +..+...++|+|+||||||++++.+..++ .+.+++++|..
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 35788888888888777754221 22233345699999999999999998765 25678999954
Q ss_pred HHHHH----------h------h-cchHHHHHHHHHHH--hcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHh
Q 006535 401 FVELY----------V------G-MGASRVRDLFARAK--KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (641)
Q Consensus 401 ~~~~~----------v------G-~~~~~vr~lF~~A~--~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~ 461 (641)
+...+ . | .....+..+|.... ....+||+|||||.|.... ..+|..|+.
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~------------QDVLYnLFR 894 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT------------QKVLFTLFD 894 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH------------HHHHHHHHH
Confidence 32211 0 1 12234556666542 2335699999999996432 234555555
Q ss_pred hhcCCCCCCcEEEEEecCC---CCCCChhhhCCCCcce-EEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC
Q 006535 462 EMDGFDSNSAVIVLGATNR---SDVLDPALRRPGRFDR-VVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (641)
Q Consensus 462 emd~~~~~~~ViVIaATN~---pd~LD~ALlRpgRFd~-~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~ 537 (641)
... .....++||+++|. ++.|++.+.+ ||.. .+.|++++.+++.+||+..+......+.+++ +..+|+...
T Consensus 895 ~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdA-IELIArkVA 969 (1164)
T PTZ00112 895 WPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTA-IQLCARKVA 969 (1164)
T ss_pred Hhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHH-HHHHHHhhh
Confidence 433 23457899999986 4677888877 5543 4788999999999999999875322244443 666666444
Q ss_pred CC--CHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcc
Q 006535 538 GF--TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAG 578 (641)
Q Consensus 538 Gf--SgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~rvi~g 578 (641)
.. ..|..-++|..|+.. .+...|+.+|+.+|+++....
T Consensus 970 q~SGDARKALDILRrAgEi---kegskVT~eHVrkAleeiE~s 1009 (1164)
T PTZ00112 970 NVSGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQLFDS 1009 (1164)
T ss_pred hcCCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHHhh
Confidence 22 334455566666654 344589999999999876443
No 96
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.2e-14 Score=165.35 Aligned_cols=207 Identities=19% Similarity=0.229 Sum_probs=147.9
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC----------
Q 006535 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---------- 392 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p---------- 392 (641)
.+...+.+|+||+|++.+++.|...+.. .+.+..+||+||||||||++|+++|+.+.+.
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~ 75 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNT 75 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcc
Confidence 3455678999999999999998888752 2345679999999999999999999988653
Q ss_pred --------------eEEeehhhHHHHHhhcchHHHHHHHHHHH----hcCCceEEEcchhhhhhhcCCcccccchhHHHH
Q 006535 393 --------------FISCSASEFVELYVGMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQ 454 (641)
Q Consensus 393 --------------fi~vs~se~~~~~vG~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~ 454 (641)
++.+++.. ..+...++.+.+.+. .....||||||+|.|.. .
T Consensus 76 C~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~---------------~ 134 (624)
T PRK14959 76 CEQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR---------------E 134 (624)
T ss_pred cHHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH---------------H
Confidence 22232210 112334454433332 23345999999999842 2
Q ss_pred HHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHH
Q 006535 455 TLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIAS 534 (641)
Q Consensus 455 ~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~ 534 (641)
..+.|+..|+.. ...+++|.+|+.++.+.+.+++ |+. .+.|..++.++..++|+..+.+.++.++++ .+..|++
T Consensus 135 a~naLLk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~e-al~lIA~ 208 (624)
T PRK14959 135 AFNALLKTLEEP--PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPA-AVRLIAR 208 (624)
T ss_pred HHHHHHHHhhcc--CCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Confidence 347788888753 3457788888888888888887 653 789999999999999999888777767655 4778888
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006535 535 MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 535 ~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl 572 (641)
.+.| +.+++.+++++++ + .+...|+.+++.+++
T Consensus 209 ~s~G-dlR~Al~lLeqll--~--~g~~~It~d~V~~~l 241 (624)
T PRK14959 209 RAAG-SVRDSMSLLGQVL--A--LGESRLTIDGARGVL 241 (624)
T ss_pred HcCC-CHHHHHHHHHHHH--H--hcCCCcCHHHHHHHh
Confidence 8765 6777777777653 2 244478888776554
No 97
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.1e-14 Score=165.81 Aligned_cols=212 Identities=20% Similarity=0.210 Sum_probs=149.4
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-------eEEe
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC 396 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p-------fi~v 396 (641)
+...+.+|+||+|++.+++.|+..+.. .+.+..+||+||+|||||++|+++|+.+++. .-.|
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 445677999999999999998888752 3456678999999999999999999987642 1111
Q ss_pred -ehhhHHH----------H--HhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHH
Q 006535 397 -SASEFVE----------L--YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 459 (641)
Q Consensus 397 -s~se~~~----------~--~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqL 459 (641)
+|..+.. . -...+...++++.+.+.. ....|++|||+|.|.. ...|.|
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~---------------~A~NAL 138 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT---------------AGFNAL 138 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH---------------HHHHHH
Confidence 1111110 0 001134556666555532 2234999999999843 245788
Q ss_pred HhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCC
Q 006535 460 LTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF 539 (641)
Q Consensus 460 L~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~Gf 539 (641)
|..|+. ....+++|.+|+.++.|.+.+++ | ..++.|..++.++..+.+...+.+.++.++++ .+..++....|
T Consensus 139 LK~LEE--pp~~~~fIL~tte~~kll~TI~S--R-c~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~-al~~Ia~~s~G- 211 (584)
T PRK14952 139 LKIVEE--PPEHLIFIFATTEPEKVLPTIRS--R-THHYPFRLLPPRTMRALIARICEQEGVVVDDA-VYPLVIRAGGG- 211 (584)
T ss_pred HHHHhc--CCCCeEEEEEeCChHhhHHHHHH--h-ceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-
Confidence 888884 33467788788888899999988 5 35899999999999999999998877766554 36667776665
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 006535 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (641)
Q Consensus 540 SgaDL~~Lv~eAal~A~r~~~~~It~~d~~eA 571 (641)
+.+++.++++.++..+ +...|+.+++.+.
T Consensus 212 dlR~aln~Ldql~~~~---~~~~It~~~v~~l 240 (584)
T PRK14952 212 SPRDTLSVLDQLLAGA---ADTHVTYQRALGL 240 (584)
T ss_pred CHHHHHHHHHHHHhcc---CCCCcCHHHHHHH
Confidence 8899999998876543 2345666655544
No 98
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.2e-14 Score=164.13 Aligned_cols=205 Identities=20% Similarity=0.274 Sum_probs=147.4
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCC------------
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV------------ 391 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~------------ 391 (641)
+...+.+|+||+|++.+++.|...+.. .+.+..+||+||||+|||++|+++|..+.+
T Consensus 8 ~KyRP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 8 RKYRPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHHCcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 344677999999999999988877752 245667999999999999999999998754
Q ss_pred ------------CeEEeehhhHHHHHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHH
Q 006535 392 ------------PFISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (641)
Q Consensus 392 ------------pfi~vs~se~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (641)
.++.+++. ...+...++++.+.+.. ....|++|||+|.+.. ..
T Consensus 77 ~sC~~i~~~~~~dlieidaa------s~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~---------------~a 135 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAA------SRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK---------------QS 135 (546)
T ss_pred HHHHHHhcCCCCceEEeecc------cccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH---------------HH
Confidence 12222211 11233455666665542 2345999999998853 23
Q ss_pred HHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 006535 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (641)
Q Consensus 456 LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~ 535 (641)
.+.||..|+.. ...+++|.+|+.+..+.+.+++ |. ..+++.+++.++....++..+.+.++.++++ .+..++..
T Consensus 136 ~naLLK~LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~-Al~~Ia~~ 209 (546)
T PRK14957 136 FNALLKTLEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQ-SLEYIAYH 209 (546)
T ss_pred HHHHHHHHhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 47788888843 3456666666778888888887 54 5899999999999999999888777766544 47778888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 006535 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (641)
Q Consensus 536 T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eA 571 (641)
+.| +.+++.++++.+..... ..|+.+++.++
T Consensus 210 s~G-dlR~alnlLek~i~~~~----~~It~~~V~~~ 240 (546)
T PRK14957 210 AKG-SLRDALSLLDQAISFCG----GELKQAQIKQM 240 (546)
T ss_pred cCC-CHHHHHHHHHHHHHhcc----CCCCHHHHHHH
Confidence 865 88888888888775532 45777777764
No 99
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.1e-14 Score=164.39 Aligned_cols=223 Identities=22% Similarity=0.314 Sum_probs=156.7
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH--------
Q 006535 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-------- 403 (641)
Q Consensus 332 ~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~-------- 403 (641)
.|-.|++++|+.+-|.+.-.+.. +.....-++|+||||+|||+|++.+|..+|.+|+.++...+.+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 47899999999888876553321 1222346889999999999999999999999999998765433
Q ss_pred -HHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC-------------CC
Q 006535 404 -LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-------------SN 469 (641)
Q Consensus 404 -~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~-------------~~ 469 (641)
.|+|....++-+-..+|....| +++|||||.++.+-.+. --..||.-+|--+ .-
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGD-----------PaSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGD-----------PASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCC-----------hHHHHHhhcCHhhcCchhhccccCccch
Confidence 5899999999999999999999 99999999998654321 1134555554211 12
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc-----CCC-----CCCCCCCHHHHHH-hCC-
Q 006535 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK-----KEL-----PLAKDIDLGDIAS-MTT- 537 (641)
Q Consensus 470 ~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~-----~~l-----~l~~dvdl~~LA~-~T~- 537 (641)
+.|++|||+|..+.++.+|+. |+. .|++.-+..++..+|.+.|+-. .++ .+.++. +..|.+ +|.
T Consensus 465 S~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~a-i~~iI~~YTRE 540 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEA-IKDIIRYYTRE 540 (782)
T ss_pred hheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHH-HHHHHHHHhHh
Confidence 479999999999999999999 885 8999999999999999988632 222 222222 333333 221
Q ss_pred -CCCH--HHHHHHHHHHHHHHHhcCCc---cccHHHHHHHHHHHh
Q 006535 538 -GFTG--ADLANLVNEAALLAGRLNKV---VVEKIDFIHAVERSI 576 (641)
Q Consensus 538 -GfSg--aDL~~Lv~eAal~A~r~~~~---~It~~d~~eAl~rvi 576 (641)
|.-+ ++|..+|+.++..-...... .|+..++.+-+-...
T Consensus 541 AGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~~ 585 (782)
T COG0466 541 AGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGVPV 585 (782)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCCcc
Confidence 2211 55666666665543332222 467777776665433
No 100
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.60 E-value=2.1e-14 Score=145.16 Aligned_cols=201 Identities=23% Similarity=0.341 Sum_probs=126.8
Q ss_pred Ccccccccc-CC--hHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEeeh
Q 006535 327 DTITFADVA-GV--DEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSA 398 (641)
Q Consensus 327 ~~vtf~DV~-G~--ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-----g~pfi~vs~ 398 (641)
+..||++.+ |. ..+....+.+.+ ++. .....++||||+|+|||+|.+|+++++ +..++++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~---~~~-------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAE---NPG-------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHH---STT-------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHh---cCC-------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 567899985 43 233333333332 221 123459999999999999999999874 677999999
Q ss_pred hhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEec
Q 006535 399 SEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (641)
Q Consensus 399 se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaAT 478 (641)
.+|...+.......-..-|..... ...+|+||++|.+..+. ... ..|+..++.+....+.+|+++.
T Consensus 73 ~~f~~~~~~~~~~~~~~~~~~~~~-~~DlL~iDDi~~l~~~~----------~~q---~~lf~l~n~~~~~~k~li~ts~ 138 (219)
T PF00308_consen 73 EEFIREFADALRDGEIEEFKDRLR-SADLLIIDDIQFLAGKQ----------RTQ---EELFHLFNRLIESGKQLILTSD 138 (219)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHC-TSSEEEEETGGGGTTHH----------HHH---HHHHHHHHHHHHTTSEEEEEES
T ss_pred HHHHHHHHHHHHcccchhhhhhhh-cCCEEEEecchhhcCch----------HHH---HHHHHHHHHHHhhCCeEEEEeC
Confidence 999876654322211122332222 34599999999986432 112 2233333333234456777776
Q ss_pred CCCCC---CChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q 006535 479 NRSDV---LDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAAL 553 (641)
Q Consensus 479 N~pd~---LD~ALlRpgRF--d~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal 553 (641)
..|.. +++.|.+ || ...+.+..|+.++|.+|++..+..+++.+++++ ++.|++...+ +.++|..+++....
T Consensus 139 ~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v-~~~l~~~~~~-~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 139 RPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEV-IEYLARRFRR-DVRELEGALNRLDA 214 (219)
T ss_dssp S-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHH-HHHHHHHTTS-SHHHHHHHHHHHHH
T ss_pred CCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHH-HHHHHHhhcC-CHHHHHHHHHHHHH
Confidence 66654 4677877 66 458899999999999999999999999988875 7788888765 88999999988766
Q ss_pred HH
Q 006535 554 LA 555 (641)
Q Consensus 554 ~A 555 (641)
.+
T Consensus 215 ~~ 216 (219)
T PF00308_consen 215 YA 216 (219)
T ss_dssp HH
T ss_pred Hh
Confidence 55
No 101
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=2.6e-14 Score=164.76 Aligned_cols=213 Identities=21% Similarity=0.279 Sum_probs=153.7
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeE---Eeehh
Q 006535 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI---SCSAS 399 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi---~vs~s 399 (641)
+...++.+|+||+|++.+++.|+..+.. .+.+..+||+||+|+|||++|+++|..+.++-- .-.|.
T Consensus 9 ~~KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~ 77 (725)
T PRK07133 9 YRKYRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQ 77 (725)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchh
Confidence 3445678999999999999988888752 245677999999999999999999998765321 01121
Q ss_pred hHHHH-------H-----hhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhh
Q 006535 400 EFVEL-------Y-----VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM 463 (641)
Q Consensus 400 e~~~~-------~-----vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~em 463 (641)
..... + ...+...+|++.+.+.. ....|++|||+|.|.. ...+.||..|
T Consensus 78 ~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~---------------~A~NALLKtL 142 (725)
T PRK07133 78 ECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK---------------SAFNALLKTL 142 (725)
T ss_pred HHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH---------------HHHHHHHHHh
Confidence 11110 0 01235567888777654 2345999999998842 2457888888
Q ss_pred cCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHH
Q 006535 464 DGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGAD 543 (641)
Q Consensus 464 d~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaD 543 (641)
+. +...+++|.+|+.++.|.+.+++ |.. .+.|.+|+.++..++|+..+.+.++.+.++ .+..+|..+.| +.++
T Consensus 143 EE--PP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~e-Al~~LA~lS~G-slR~ 215 (725)
T PRK07133 143 EE--PPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKN-ALKLIAKLSSG-SLRD 215 (725)
T ss_pred hc--CCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHH
Confidence 85 34567778888888999999988 664 889999999999999999888777666544 37778888876 7888
Q ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006535 544 LANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 544 L~~Lv~eAal~A~r~~~~~It~~d~~eAl 572 (641)
+.++++.+.... ...|+.+++.+.+
T Consensus 216 AlslLekl~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 216 ALSIAEQVSIFG----NNKITLKNVEELF 240 (725)
T ss_pred HHHHHHHHHHhc----cCCCCHHHHHHHH
Confidence 888888766543 2337777776643
No 102
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.60 E-value=1.8e-14 Score=171.23 Aligned_cols=166 Identities=25% Similarity=0.361 Sum_probs=126.6
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc----------CCCeEEe
Q 006535 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (641)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------g~pfi~v 396 (641)
.+-++++++|.++..+.+.+++. . +...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~---r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQ---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHh---c---------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 34578899999986554444442 2 233579999999999999999999987 7889999
Q ss_pred ehhhHH--HHHhhcchHHHHHHHHHHHh-cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEE
Q 006535 397 SASEFV--ELYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (641)
Q Consensus 397 s~se~~--~~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~Vi 473 (641)
+.+.++ ..|.|..+.+++.+|+.+.. ..++||||||+|.|.+.+.+ .++.+. -+.|...+ .++.+.
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~---~~~~d~----~~~lkp~l----~~g~l~ 309 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA---DGAMDA----GNMLKPAL----ARGELH 309 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC---ccchhH----HHHhcchh----hcCCCe
Confidence 888876 35788889999999998644 56889999999999865432 122221 12233222 356799
Q ss_pred EEEecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc
Q 006535 474 VLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (641)
Q Consensus 474 VIaATN~pd-----~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~ 518 (641)
+|+||+..+ .+|+++.| ||+ .|.++.|+.+++..||+.+..+
T Consensus 310 ~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 310 CVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred EEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 999999876 48999999 998 6889999999999999877654
No 103
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.2e-14 Score=166.06 Aligned_cols=205 Identities=18% Similarity=0.245 Sum_probs=151.6
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----------
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p----------- 392 (641)
+...+.+|+||+|++++++.|...+.. .+.+..+||+||+|+|||++|+++|+.++++
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 344677999999999999998887752 2456778999999999999999999987642
Q ss_pred -------------eEEeehhhHHHHHhhcchHHHHHHHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHH
Q 006535 393 -------------FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (641)
Q Consensus 393 -------------fi~vs~se~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (641)
++.+++.. ..+...++++.+.+... ...|++|||+|.|.. ..
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~---------------~a 135 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST---------------NA 135 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH---------------HH
Confidence 22222211 12345677777666432 224999999998853 23
Q ss_pred HHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 006535 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (641)
Q Consensus 456 LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~ 535 (641)
.|.|+..|+. ....+++|.+|+.++.|.+.+++ |. ..+.|..++.++....+...+.+.++.++++ .+..++..
T Consensus 136 ~naLLk~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~-al~~la~~ 209 (576)
T PRK14965 136 FNALLKTLEE--PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDA-ALALVARK 209 (576)
T ss_pred HHHHHHHHHc--CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHH
Confidence 4788888884 34467788888888999999987 54 3788999999999999999888888777665 47888888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 006535 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (641)
Q Consensus 536 T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eA 571 (641)
+.| +.+++.++++.+..... ..|+.+++...
T Consensus 210 a~G-~lr~al~~Ldqliay~g----~~It~edV~~l 240 (576)
T PRK14965 210 GDG-SMRDSLSTLDQVLAFCG----DAVGDDDVAEL 240 (576)
T ss_pred cCC-CHHHHHHHHHHHHHhcc----CCCCHHHHHHH
Confidence 876 78888888887765542 24777766544
No 104
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=1.8e-14 Score=169.53 Aligned_cols=211 Identities=21% Similarity=0.193 Sum_probs=147.2
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-------eEEe
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC 396 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p-------fi~v 396 (641)
.+..+.+|+||+|++.+++.|+..+.. .+.+..+||+||+|||||++|+.+|+.+.+. .-.|
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 345678999999999999998888752 3456678999999999999999999998652 1111
Q ss_pred -ehhhHHH----------H--HhhcchHHHHHHHHHHH----hcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHH
Q 006535 397 -SASEFVE----------L--YVGMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 459 (641)
Q Consensus 397 -s~se~~~----------~--~vG~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqL 459 (641)
+|..+.. . ....+...+|++.+.+. .....|+||||+|.|.. ...|.|
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~---------------~a~NaL 140 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP---------------QGFNAL 140 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH---------------HHHHHH
Confidence 1111100 0 00013345666544432 23445999999999953 345788
Q ss_pred HhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCC
Q 006535 460 LTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF 539 (641)
Q Consensus 460 L~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~Gf 539 (641)
|..|+... ..+++|.+|+.++.|.+.|++ |. .++.|..++.++..++|+..+.+.++.++++ .+..|+....|
T Consensus 141 LK~LEEpP--~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~e-al~lLa~~sgG- 213 (824)
T PRK07764 141 LKIVEEPP--EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPG-VLPLVIRAGGG- 213 (824)
T ss_pred HHHHhCCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-
Confidence 88888543 456777777888888888888 54 4889999999999999999998877776554 36777777766
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccccHHHHHH
Q 006535 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (641)
Q Consensus 540 SgaDL~~Lv~eAal~A~r~~~~~It~~d~~e 570 (641)
+.+++.++++..+..+ +...|+.+++..
T Consensus 214 dlR~Al~eLEKLia~~---~~~~IT~e~V~a 241 (824)
T PRK07764 214 SVRDSLSVLDQLLAGA---GPEGVTYERAVA 241 (824)
T ss_pred CHHHHHHHHHHHHhhc---CCCCCCHHHHHH
Confidence 8888888888766433 234466665443
No 105
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=1.4e-14 Score=164.06 Aligned_cols=206 Identities=17% Similarity=0.245 Sum_probs=149.0
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCC-----------
Q 006535 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV----------- 391 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~----------- 391 (641)
++..++.+|+|++|++.+++.|...+. ..+.|.++||+||||+|||++|+++|..+.+
T Consensus 7 ~~KyRP~~F~dIIGQe~iv~~L~~aI~-----------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~ 75 (605)
T PRK05896 7 YRKYRPHNFKQIIGQELIKKILVNAIL-----------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNS 75 (605)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 344567899999999999988887764 2345678999999999999999999998743
Q ss_pred -------------CeEEeehhhHHHHHhhcchHHHHHHHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHH
Q 006535 392 -------------PFISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQ 454 (641)
Q Consensus 392 -------------pfi~vs~se~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~ 454 (641)
.++.++++ ...+...+|++.+.+... ...|++|||+|.|...
T Consensus 76 C~sCr~i~~~~h~DiieIdaa------s~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~--------------- 134 (605)
T PRK05896 76 CSVCESINTNQSVDIVELDAA------SNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS--------------- 134 (605)
T ss_pred cHHHHHHHcCCCCceEEeccc------cccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHH---------------
Confidence 11222211 012345577777665532 2349999999988421
Q ss_pred HHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHH
Q 006535 455 TLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIAS 534 (641)
Q Consensus 455 ~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~ 534 (641)
..+.|+..|+.. ...+++|.+|+.++.|.+.+++ |.. .+.+.+|+..+....++..+.+.+..++++ .+..++.
T Consensus 135 A~NaLLKtLEEP--p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~e-al~~La~ 208 (605)
T PRK05896 135 AWNALLKTLEEP--PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDN-AIDKIAD 208 (605)
T ss_pred HHHHHHHHHHhC--CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Confidence 336788888743 3457777788888999999988 654 789999999999999999888777767655 3777888
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 006535 535 MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (641)
Q Consensus 535 ~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eA 571 (641)
.+.| +.+++.++++.+...+ +. .|+.+++.+.
T Consensus 209 lS~G-dlR~AlnlLekL~~y~---~~-~It~e~V~el 240 (605)
T PRK05896 209 LADG-SLRDGLSILDQLSTFK---NS-EIDIEDINKT 240 (605)
T ss_pred HcCC-cHHHHHHHHHHHHhhc---CC-CCCHHHHHHH
Confidence 8876 7888888888765543 22 2777666653
No 106
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.60 E-value=3.8e-14 Score=157.48 Aligned_cols=221 Identities=14% Similarity=0.239 Sum_probs=145.2
Q ss_pred cccccccc-CChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEeehhhH
Q 006535 328 TITFADVA-GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEF 401 (641)
Q Consensus 328 ~vtf~DV~-G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-----g~pfi~vs~se~ 401 (641)
..||++.+ |... ...+..+.....+| | ...++++|||++|+|||+|++|+++++ +..++++++.+|
T Consensus 111 ~~tFdnFv~g~~n-~~A~~aa~~~a~~~------~-~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f 182 (450)
T PRK14087 111 ENTFENFVIGSSN-EQAFIAVQTVSKNP------G-ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF 182 (450)
T ss_pred ccchhcccCCCcH-HHHHHHHHHHHhCc------C-cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 46888866 4432 22222222222332 1 123569999999999999999999854 578899999998
Q ss_pred HHHHhhcchH---HHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEec
Q 006535 402 VELYVGMGAS---RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (641)
Q Consensus 402 ~~~~vG~~~~---~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaAT 478 (641)
...+...-.. .+.+ |.... ..+.+|+|||++.+..+. .....+-.++..+ ....+.+|+++.
T Consensus 183 ~~~~~~~l~~~~~~~~~-~~~~~-~~~dvLiIDDiq~l~~k~----------~~~e~lf~l~N~~---~~~~k~iIltsd 247 (450)
T PRK14087 183 ARKAVDILQKTHKEIEQ-FKNEI-CQNDVLIIDDVQFLSYKE----------KTNEIFFTIFNNF---IENDKQLFFSSD 247 (450)
T ss_pred HHHHHHHHHHhhhHHHH-HHHHh-ccCCEEEEeccccccCCH----------HHHHHHHHHHHHH---HHcCCcEEEECC
Confidence 8776543221 2222 22111 245699999999885322 1112222233322 223334555444
Q ss_pred CCCC---CCChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCC--CCCCCCCHHHHHHhCCCCCHHHHHHHHHHH
Q 006535 479 NRSD---VLDPALRRPGRF--DRVVMVETPDKIGREAILKVHVSKKEL--PLAKDIDLGDIASMTTGFTGADLANLVNEA 551 (641)
Q Consensus 479 N~pd---~LD~ALlRpgRF--d~~I~v~~Pd~~eR~eILk~~l~~~~l--~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eA 551 (641)
..|. .+++.|.+ || ...+.+.+|+.++|.+||+..+...++ .+++++ +..|+....| +++.|.++++.+
T Consensus 248 ~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~ev-l~~Ia~~~~g-d~R~L~gaL~~l 323 (450)
T PRK14087 248 KSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEA-INFISNYYSD-DVRKIKGSVSRL 323 (450)
T ss_pred CCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHH-HHHHHHccCC-CHHHHHHHHHHH
Confidence 4443 45788888 77 467889999999999999999987664 455553 7788888877 899999999998
Q ss_pred HHHHHhcC-CccccHHHHHHHHHHH
Q 006535 552 ALLAGRLN-KVVVEKIDFIHAVERS 575 (641)
Q Consensus 552 al~A~r~~-~~~It~~d~~eAl~rv 575 (641)
...+.... ...|+.+.+.+++...
T Consensus 324 ~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 324 NFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHhcccCCCCCCHHHHHHHHhhc
Confidence 86665542 3579999998888764
No 107
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.59 E-value=3e-14 Score=169.50 Aligned_cols=204 Identities=22% Similarity=0.332 Sum_probs=147.1
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc----------CCCeEEe
Q 006535 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISC 396 (641)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------g~pfi~v 396 (641)
.+-.++.++|.++..+.+.+++. .+...+++|+||||||||++|+++|..+ +.+++.+
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLS------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHh------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 34568899999986554444432 2234578999999999999999999975 6788998
Q ss_pred ehhhHH--HHHhhcchHHHHHHHHHHHh-cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEE
Q 006535 397 SASEFV--ELYVGMGASRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (641)
Q Consensus 397 s~se~~--~~~vG~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~Vi 473 (641)
+.+.++ ..|.|..+.+++.+|+.+.. ..|+||||||||.|.+.+... +.. ...+.|...+ .+..+.
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~---~~~----d~~~~Lk~~l----~~g~i~ 304 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE---GAM----DAGNMLKPAL----ARGELH 304 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc---chh----HHHHHhchhh----hcCceE
Confidence 888776 46888889999999998865 458999999999997543211 111 1223333222 356799
Q ss_pred EEEecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC----CCCCCCCCCHHHHHHhCCCC-----
Q 006535 474 VLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK----ELPLAKDIDLGDIASMTTGF----- 539 (641)
Q Consensus 474 VIaATN~pd-----~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~----~l~l~~dvdl~~LA~~T~Gf----- 539 (641)
+|++|+..+ .+|+++.| ||. .|.++.|+.+++..||+.+..+. ++.+.++ .+...+..+.+|
T Consensus 305 ~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~-~i~~~~~ls~~yi~~r~ 380 (852)
T TIGR03346 305 CIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDP-AIVAAATLSHRYITDRF 380 (852)
T ss_pred EEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHH-HHHHHHHhccccccccC
Confidence 999998763 47999999 997 68999999999999998876543 2223222 355556666555
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 006535 540 TGADLANLVNEAALLAGR 557 (641)
Q Consensus 540 SgaDL~~Lv~eAal~A~r 557 (641)
-|.....++++|+..+..
T Consensus 381 lPdkAidlld~a~a~~~~ 398 (852)
T TIGR03346 381 LPDKAIDLIDEAAARIRM 398 (852)
T ss_pred CchHHHHHHHHHHHHHHh
Confidence 356677889998866543
No 108
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=4.7e-14 Score=157.97 Aligned_cols=212 Identities=21% Similarity=0.279 Sum_probs=148.1
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCC-------CeEEe
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISC 396 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~-------pfi~v 396 (641)
...++.+|+|++|++.+.+.|+..+.. .+.+..+|||||+|+|||++|+.+|..+++ |+-.+
T Consensus 8 ~kyRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 8 RKYRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred HhhCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 344667899999999999988877742 234566899999999999999999998763 11111
Q ss_pred -ehhhHHH-----HH-----hhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHh
Q 006535 397 -SASEFVE-----LY-----VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (641)
Q Consensus 397 -s~se~~~-----~~-----vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~ 461 (641)
+|..+.. .+ ...+...++.+.+.+.. ..+.|++|||+|.+.. ...+.|+.
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~---------------~a~naLLk 141 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK---------------EAFNALLK 141 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH---------------HHHHHHHH
Confidence 1111111 00 11234456666655543 2345999999998842 23467777
Q ss_pred hhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCH
Q 006535 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (641)
Q Consensus 462 emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSg 541 (641)
.++.. ...+++|.+|+.++.+.+++.+ |+. .+.+.+|+.++...++..++...++.++++ .+..++..+.| +.
T Consensus 142 ~LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~-al~~La~~s~G-~l 214 (486)
T PRK14953 142 TLEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEK-ALDLLAQASEG-GM 214 (486)
T ss_pred HHhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 77743 3345666666777888888887 654 789999999999999999998888776555 47778888776 78
Q ss_pred HHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006535 542 ADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 542 aDL~~Lv~eAal~A~r~~~~~It~~d~~eAl 572 (641)
+++.++++.+...+ ...||.+++.+++
T Consensus 215 r~al~~Ldkl~~~~----~~~It~~~V~~~l 241 (486)
T PRK14953 215 RDAASLLDQASTYG----EGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHHHHHhc----CCCcCHHHHHHHh
Confidence 88888888876543 3457877777654
No 109
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=4.9e-14 Score=158.60 Aligned_cols=205 Identities=21% Similarity=0.257 Sum_probs=149.6
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----------
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------- 392 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p----------- 392 (641)
+..++.+|+||+|++.+++.|...+.. .+.|..+|||||+|+|||++|+++|..+.++
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 445678999999999999998888752 2456678999999999999999999986321
Q ss_pred -------------eEEeehhhHHHHHhhcchHHHHHHHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHH
Q 006535 393 -------------FISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (641)
Q Consensus 393 -------------fi~vs~se~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (641)
++.++++. ..+...++++.+.+... ...|++|||+|.+.. ..
T Consensus 75 ~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~---------------~A 133 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK---------------EA 133 (535)
T ss_pred HHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HH
Confidence 22222110 11245677776654321 124999999998842 34
Q ss_pred HHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 006535 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (641)
Q Consensus 456 LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~ 535 (641)
.+.||..|+... ..+.+|.+|+.+..|.+++++ |. ..++|.+++.++..+.++..+.+.++.++++ .+..|+..
T Consensus 134 ~NALLK~LEEpp--~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~-Al~~Ia~~ 207 (535)
T PRK08451 134 FNALLKTLEEPP--SYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPE-ALEILARS 207 (535)
T ss_pred HHHHHHHHhhcC--CceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 578888888653 345666666778999999988 63 5889999999999999999998888777655 57888888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 006535 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (641)
Q Consensus 536 T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eA 571 (641)
..| +.+++.++++.|...+ ...||.+++.+.
T Consensus 208 s~G-dlR~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 208 GNG-SLRDTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred cCC-cHHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 876 8899999998887665 234666666544
No 110
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=1.7e-14 Score=157.95 Aligned_cols=217 Identities=14% Similarity=0.193 Sum_probs=149.5
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeE--------
Q 006535 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI-------- 394 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi-------- 394 (641)
++...+.+|++|+|++.+++.|+..+.. .+.|..+||+||||+|||++|+++|+++.+.-.
T Consensus 7 ~~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~ 75 (397)
T PRK14955 7 ARKYRPKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQ 75 (397)
T ss_pred HHhcCCCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccc
Confidence 4455778999999999999988877752 356778999999999999999999998865310
Q ss_pred --Eeeh------hhHHH-------HHhh---cchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHH
Q 006535 395 --SCSA------SEFVE-------LYVG---MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDER 452 (641)
Q Consensus 395 --~vs~------se~~~-------~~vG---~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~ 452 (641)
.-.| ..+.. .+.+ .+...++++.+.+.. ....|++|||+|.+...
T Consensus 76 ~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~------------- 142 (397)
T PRK14955 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA------------- 142 (397)
T ss_pred cCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH-------------
Confidence 0011 11110 0111 124566666555531 12349999999988531
Q ss_pred HHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHH
Q 006535 453 EQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDI 532 (641)
Q Consensus 453 ~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~L 532 (641)
..+.|+..++... ...++|.+|+.+..+-+.+.+ |.. .+++.+++.++..+.++..+.+.+..++++ .++.+
T Consensus 143 --~~~~LLk~LEep~--~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~-al~~l 214 (397)
T PRK14955 143 --AFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDAD-ALQLI 214 (397)
T ss_pred --HHHHHHHHHhcCC--CCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHH
Confidence 2356777776332 345555566667788888877 543 788999999999999998887777667665 47788
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHHHh-cCCccccHHHHHHHH
Q 006535 533 ASMTTGFTGADLANLVNEAALLAGR-LNKVVVEKIDFIHAV 572 (641)
Q Consensus 533 A~~T~GfSgaDL~~Lv~eAal~A~r-~~~~~It~~d~~eAl 572 (641)
+..+.| +.+.+.+.++.+...+.. .....|+.+++.+.+
T Consensus 215 ~~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 215 GRKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 888866 788888888887766532 234578888877655
No 111
>PRK08727 hypothetical protein; Validated
Probab=99.59 E-value=4.3e-14 Score=144.01 Aligned_cols=181 Identities=22% Similarity=0.226 Sum_probs=124.1
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCC
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDG 442 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~ 442 (641)
..++|+||+|||||+|++|++.++ +...++++..++... +.+.++.. ....+|+|||+|.+....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~--------~~~~~~~l--~~~dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGR--------LRDALEAL--EGRSLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhh--------HHHHHHHH--hcCCEEEEeCcccccCCh--
Confidence 459999999999999999997764 667777776654432 22334333 234599999999875322
Q ss_pred cccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCC---ChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHHh
Q 006535 443 RFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVL---DPALRRPGRF--DRVVMVETPDKIGREAILKVHVS 517 (641)
Q Consensus 443 ~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~L---D~ALlRpgRF--d~~I~v~~Pd~~eR~eILk~~l~ 517 (641)
.....+-.++..+. .+..-+|+++...|..+ +++|.+ || ...+.+++|+.+++.+|++.++.
T Consensus 110 --------~~~~~lf~l~n~~~---~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 110 --------EDEVALFDFHNRAR---AAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQ 176 (233)
T ss_pred --------HHHHHHHHHHHHHH---HcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHH
Confidence 11223333444432 22222444444566544 789988 76 56889999999999999999887
Q ss_pred cCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 006535 518 KKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (641)
Q Consensus 518 ~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~r 574 (641)
.+++.+++++ ++.|++++.| +.+.+.++++.....+...+ ..||...+.+.+..
T Consensus 177 ~~~l~l~~e~-~~~La~~~~r-d~r~~l~~L~~l~~~~~~~~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 177 RRGLALDEAA-IDWLLTHGER-ELAGLVALLDRLDRESLAAK-RRVTVPFLRRVLEE 230 (233)
T ss_pred HcCCCCCHHH-HHHHHHhCCC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHhh
Confidence 7788887764 8888988875 67777777887665454444 46888888877643
No 112
>PRK05642 DNA replication initiation factor; Validated
Probab=99.59 E-value=7.7e-14 Score=142.34 Aligned_cols=180 Identities=16% Similarity=0.221 Sum_probs=127.0
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcC
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRD 441 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~ 441 (641)
..+++|+||+|+|||+|++++++++ +...++++..++.... ..+.+.... ..+|+|||++.+..+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~~ 114 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKAD 114 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCChH
Confidence 4679999999999999999998764 6778889988876531 122222222 24899999998753321
Q ss_pred CcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC---CCChhhhCCCCc--ceEEEecCCCHHHHHHHHHHHH
Q 006535 442 GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD---VLDPALRRPGRF--DRVVMVETPDKIGREAILKVHV 516 (641)
Q Consensus 442 ~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd---~LD~ALlRpgRF--d~~I~v~~Pd~~eR~eILk~~l 516 (641)
..+ .|+..++.+..+...++++++..|. ...+.|.+ || ...+.+..|+.+++.++++..+
T Consensus 115 ----------~~~---~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 115 ----------WEE---ALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred ----------HHH---HHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 122 2333333333345567777776664 33688888 77 4678889999999999999777
Q ss_pred hcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006535 517 SKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 517 ~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl 572 (641)
...++.+++++ ++.|+++..+ +.+.|.++++.-...+.. .+..||..-+.+++
T Consensus 180 ~~~~~~l~~ev-~~~L~~~~~~-d~r~l~~~l~~l~~~~l~-~~~~it~~~~~~~L 232 (234)
T PRK05642 180 SRRGLHLTDEV-GHFILTRGTR-SMSALFDLLERLDQASLQ-AQRKLTIPFLKETL 232 (234)
T ss_pred HHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHHHHH-cCCcCCHHHHHHHh
Confidence 77777787765 7888888876 899999999987654433 33568887777665
No 113
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=4.9e-14 Score=160.25 Aligned_cols=212 Identities=18% Similarity=0.198 Sum_probs=151.5
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-------eEEe
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC 396 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p-------fi~v 396 (641)
....+.+|+||+|++.+++.|+..+.. .+.+..+||+||||+|||++|+++|+.+.++ .-.|
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 344677899999999999988887752 2456779999999999999999999987642 1111
Q ss_pred -ehhhHHHH-------Hhh---cchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHh
Q 006535 397 -SASEFVEL-------YVG---MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (641)
Q Consensus 397 -s~se~~~~-------~vG---~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~ 461 (641)
+|..+... +.| .+...++++.+.+.. ....|++|||+|.+.. ...+.|+.
T Consensus 77 ~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~---------------~a~naLLK 141 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN---------------SAFNALLK 141 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH---------------HHHHHHHH
Confidence 11111000 011 223456666554432 3345999999998842 24578888
Q ss_pred hhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCH
Q 006535 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (641)
Q Consensus 462 emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSg 541 (641)
.++. ....+++|.+|+.+..|.+++++ |+. .+.+.+++.++..++++..+.+.++.++++ .+..|+....| +.
T Consensus 142 ~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~e-Al~lLa~~s~G-dl 214 (563)
T PRK06647 142 TIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDE-ALKWIAYKSTG-SV 214 (563)
T ss_pred hhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 8874 34567777788878889999988 654 789999999999999999988877777665 47778888776 88
Q ss_pred HHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006535 542 ADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 542 aDL~~Lv~eAal~A~r~~~~~It~~d~~eAl 572 (641)
+++.++++.+...+ ...|+.+++.+++
T Consensus 215 R~alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 215 RDAYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 99999988776543 2347777766654
No 114
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=6.7e-14 Score=159.96 Aligned_cols=214 Identities=18% Similarity=0.202 Sum_probs=155.5
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEe------
Q 006535 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC------ 396 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~v------ 396 (641)
.+...+.+|+||+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++.....
T Consensus 15 a~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~ 83 (598)
T PRK09111 15 ARKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI 83 (598)
T ss_pred HhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc
Confidence 3455778999999999999998887752 35677899999999999999999999886532111
Q ss_pred -------ehhhHHH--------HH--hhcchHHHHHHHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHH
Q 006535 397 -------SASEFVE--------LY--VGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (641)
Q Consensus 397 -------s~se~~~--------~~--vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (641)
+|..+.+ .. ...+...+|++++.+... ...|++|||+|.|.. ..
T Consensus 84 ~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~---------------~a 148 (598)
T PRK09111 84 DLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST---------------AA 148 (598)
T ss_pred ccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH---------------HH
Confidence 1111111 00 012356778887776532 245999999998842 23
Q ss_pred HHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 006535 456 LNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASM 535 (641)
Q Consensus 456 LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~ 535 (641)
.|.|+..|+... ..+++|.+|+.++.+.+.+++ |. ..+.|..|+.++...+++..+.+.++.++++ .++.|+..
T Consensus 149 ~naLLKtLEePp--~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~e-Al~lIa~~ 222 (598)
T PRK09111 149 FNALLKTLEEPP--PHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDE-ALALIARA 222 (598)
T ss_pred HHHHHHHHHhCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Confidence 578888887543 346666677777788888887 54 4789999999999999999998877777655 47778888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 006535 536 TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 536 T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~ 573 (641)
+.| +.+++.++++.+.... ...|+.+++.+.+.
T Consensus 223 a~G-dlr~al~~Ldkli~~g----~g~It~e~V~~llg 255 (598)
T PRK09111 223 AEG-SVRDGLSLLDQAIAHG----AGEVTAEAVRDMLG 255 (598)
T ss_pred cCC-CHHHHHHHHHHHHhhc----CCCcCHHHHHHHhC
Confidence 876 8899999988876542 34688888887654
No 115
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=8.3e-14 Score=154.84 Aligned_cols=207 Identities=20% Similarity=0.255 Sum_probs=145.6
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC----------
Q 006535 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---------- 392 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p---------- 392 (641)
++...+.+|+||+|++.+++.|...+.. .+.|..+|||||||+|||++|+++|..+.++
T Consensus 8 ~~kyRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~ 76 (451)
T PRK06305 8 SRKYRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCN 76 (451)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCc
Confidence 3445678999999999999988877752 2456779999999999999999999987542
Q ss_pred ---------------eEEeehhhHHHHHhhcchHHHHHHHHHHH----hcCCceEEEcchhhhhhhcCCcccccchhHHH
Q 006535 393 ---------------FISCSASEFVELYVGMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSNDERE 453 (641)
Q Consensus 393 ---------------fi~vs~se~~~~~vG~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~ 453 (641)
++.+++.. ..+...++++.+... .....||+|||+|.+..
T Consensus 77 ~c~~C~~i~~~~~~d~~~i~g~~------~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~--------------- 135 (451)
T PRK06305 77 QCASCKEISSGTSLDVLEIDGAS------HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK--------------- 135 (451)
T ss_pred ccHHHHHHhcCCCCceEEeeccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH---------------
Confidence 22222110 112244554443332 23456999999998852
Q ss_pred HHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHH
Q 006535 454 QTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIA 533 (641)
Q Consensus 454 ~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA 533 (641)
...+.|+..|+.. ...+++|.+||.+..|.+++.+ |.. .+++..++.++....+...+.+.++.++++ .+..|+
T Consensus 136 ~~~n~LLk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~-al~~L~ 209 (451)
T PRK06305 136 EAFNSLLKTLEEP--PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSRE-ALLPIA 209 (451)
T ss_pred HHHHHHHHHhhcC--CCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Confidence 2347788888853 3456777777888889999988 653 789999999999999998888777776555 477888
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006535 534 SMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 534 ~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl 572 (641)
..+.| +.+++.++++...... + ..|+.+++.+++
T Consensus 210 ~~s~g-dlr~a~~~Lekl~~~~---~-~~It~~~V~~l~ 243 (451)
T PRK06305 210 RAAQG-SLRDAESLYDYVVGLF---P-KSLDPDSVAKAL 243 (451)
T ss_pred HHcCC-CHHHHHHHHHHHHHhc---c-CCcCHHHHHHHH
Confidence 88765 6677777777654432 2 337777766554
No 116
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.57 E-value=2.6e-14 Score=167.94 Aligned_cols=219 Identities=19% Similarity=0.274 Sum_probs=147.4
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH--------
Q 006535 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-------- 403 (641)
Q Consensus 332 ~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~-------- 403 (641)
+|+.|++++|+.+.+.+...... +......++|+||||+|||++++.+|+.++.+|+.++.+...+
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 35999999999988877653321 1123446999999999999999999999999999887654322
Q ss_pred -HHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcC-----CC--------CC
Q 006535 404 -LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FD--------SN 469 (641)
Q Consensus 404 -~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~-----~~--------~~ 469 (641)
.|.|.....+...+..+....| ||+|||||.+....++ .....|+..+|. |. .-
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g-----------~~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG-----------DPASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC-----------CHHHHHHHHhccccEEEEecccccccccC
Confidence 3556666666666766655556 8999999999765321 122455555552 11 22
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC-----C-----CCCCCCCCHHHHHH-hCCC
Q 006535 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK-----E-----LPLAKDIDLGDIAS-MTTG 538 (641)
Q Consensus 470 ~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~-----~-----l~l~~dvdl~~LA~-~T~G 538 (641)
+++++|||+|.. .|+++|++ ||. .|.+..++.++..+|.+.++..+ + +.+.+++ +..|++ ++..
T Consensus 464 s~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~a-i~~ii~~yt~e 538 (784)
T PRK10787 464 SDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSA-IIGIIRYYTRE 538 (784)
T ss_pred CceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHH-HHHHHHhCCcc
Confidence 679999999987 59999999 995 88999999999999999888421 1 1222222 444443 3333
Q ss_pred CCHHHHHHHHHHHHHHHHh----cC---CccccHHHHHHHHH
Q 006535 539 FTGADLANLVNEAALLAGR----LN---KVVVEKIDFIHAVE 573 (641)
Q Consensus 539 fSgaDL~~Lv~eAal~A~r----~~---~~~It~~d~~eAl~ 573 (641)
+-.+.|+.+++..+..+.. .+ ...|+.+++.+.+-
T Consensus 539 ~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 539 AGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLG 580 (784)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhC
Confidence 3446666666554433322 21 24677777776654
No 117
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.57 E-value=1.6e-14 Score=149.71 Aligned_cols=195 Identities=23% Similarity=0.234 Sum_probs=139.1
Q ss_pred cccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC------eEE
Q 006535 322 VSEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------FIS 395 (641)
Q Consensus 322 ~~~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p------fi~ 395 (641)
..+...+.+|+|++|++.+.+.|...+.. + .-.++|||||||||||+.|+++|.++..| +..
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~-~-----------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLR-R-----------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhh-c-----------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 35667788999999999999999888754 2 22369999999999999999999998652 222
Q ss_pred eehhhHHHHHhhcchHHHHHHHHHHHh------cCC----ceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcC
Q 006535 396 CSASEFVELYVGMGASRVRDLFARAKK------EAP----SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 465 (641)
Q Consensus 396 vs~se~~~~~vG~~~~~vr~lF~~A~~------~aP----~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~ 465 (641)
.+.++.....+ ...++ .-|.+... ..| -|++|||.|.+....+ +.|...|+.
T Consensus 94 lnaSderGisv--vr~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq---------------~aLrr~mE~ 155 (346)
T KOG0989|consen 94 LNASDERGISV--VREKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQ---------------AALRRTMED 155 (346)
T ss_pred hcccccccccc--hhhhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHH---------------HHHHHHHhc
Confidence 23333222111 11111 12333221 122 4999999999965432 677888886
Q ss_pred CCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHH
Q 006535 466 FDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLA 545 (641)
Q Consensus 466 ~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~ 545 (641)
+.. .+++|..||..+.|...+.+ |-. .+.|+....+.....|+..+.+.++++++++ ++.|+..++| +-++..
T Consensus 156 ~s~--~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~a-l~~I~~~S~G-dLR~Ai 228 (346)
T KOG0989|consen 156 FSR--TTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDA-LKLIAKISDG-DLRRAI 228 (346)
T ss_pred ccc--ceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCC-cHHHHH
Confidence 543 56788889999999988887 543 5678888888888999999999999988774 8889998877 666666
Q ss_pred HHHHHHHH
Q 006535 546 NLVNEAAL 553 (641)
Q Consensus 546 ~Lv~eAal 553 (641)
..++.+..
T Consensus 229 t~Lqsls~ 236 (346)
T KOG0989|consen 229 TTLQSLSL 236 (346)
T ss_pred HHHHHhhc
Confidence 66666654
No 118
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.57 E-value=1e-13 Score=145.58 Aligned_cols=205 Identities=23% Similarity=0.257 Sum_probs=138.1
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC-----CCeEEeeh
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSA 398 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg-----~pfi~vs~ 398 (641)
+...+.+|+|++|++++++.|...+..- . ..++||+||||||||++++++++++. ..++.+++
T Consensus 9 ~kyrP~~~~~~~g~~~~~~~l~~~i~~~-----------~-~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~ 76 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIVERLKSYVKEK-----------N-MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA 76 (319)
T ss_pred hhhCCCcHHHhcCcHHHHHHHHHHHhCC-----------C-CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc
Confidence 3445679999999999998888776421 1 22589999999999999999999863 34555544
Q ss_pred hhHHHHHhhcchHHHHHHHHHHHh------cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcE
Q 006535 399 SEFVELYVGMGASRVRDLFARAKK------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAV 472 (641)
Q Consensus 399 se~~~~~vG~~~~~vr~lF~~A~~------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~V 472 (641)
++.. +...+++.+..... ..+.+|+|||+|.+... ..+.|+..++..... .
T Consensus 77 ~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~---------------~~~~L~~~le~~~~~--~ 133 (319)
T PRK00440 77 SDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD---------------AQQALRRTMEMYSQN--T 133 (319)
T ss_pred cccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH---------------HHHHHHHHHhcCCCC--C
Confidence 3221 11122222222211 22459999999988422 123455555544433 3
Q ss_pred EEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHH
Q 006535 473 IVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAA 552 (641)
Q Consensus 473 iVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAa 552 (641)
.+|.++|.+..+.+++.+ |+. .+.+++|+.++...+++.++.+.++.+.++ .+..++..+.| +.+.+.+.++.++
T Consensus 134 ~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~-al~~l~~~~~g-d~r~~~~~l~~~~ 208 (319)
T PRK00440 134 RFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDD-ALEAIYYVSEG-DMRKAINALQAAA 208 (319)
T ss_pred eEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 455566777777777877 654 689999999999999999998888777666 48888888765 6666666666544
Q ss_pred HHHHhcCCccccHHHHHHHHH
Q 006535 553 LLAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 553 l~A~r~~~~~It~~d~~eAl~ 573 (641)
.. ...||.+++..++.
T Consensus 209 ~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 209 AT-----GKEVTEEAVYKITG 224 (319)
T ss_pred Hc-----CCCCCHHHHHHHhC
Confidence 32 25688888877664
No 119
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.1e-14 Score=161.31 Aligned_cols=165 Identities=25% Similarity=0.391 Sum_probs=131.6
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH--------
Q 006535 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-------- 403 (641)
Q Consensus 332 ~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~-------- 403 (641)
+|-.|++++|+.+.|++.--+- .|....+-++|+||||+|||+++|+||..+|..|+.++...+.+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kL------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKL------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhh------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 5899999999998887765221 13445677899999999999999999999999999998764433
Q ss_pred -HHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC-------------CC
Q 006535 404 -LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-------------SN 469 (641)
Q Consensus 404 -~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~-------------~~ 469 (641)
.|+|....++-+.++......| +++|||||.++..-++. - -..||..+|--+ .-
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGD-------P----asALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGD-------P----ASALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCC-------h----HHHHHHhcChhhccchhhhccccccch
Confidence 5899999999999999999999 99999999998433221 1 134444444211 12
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHh
Q 006535 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS 517 (641)
Q Consensus 470 ~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~ 517 (641)
+.|++|||+|..+.|+++|+. |+. .|++.-+..++...|-+.|+-
T Consensus 553 SkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 479999999999999999999 885 899999999999999998874
No 120
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.57 E-value=1.5e-13 Score=149.53 Aligned_cols=229 Identities=20% Similarity=0.247 Sum_probs=165.2
Q ss_pred CCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEeehh
Q 006535 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSAS 399 (641)
Q Consensus 325 ~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-----g~pfi~vs~s 399 (641)
-.+..||++++.-+.-.....-...+-..|. ..-..++||||.|.|||+|++|+++++ +..+++++..
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g-------~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENPG-------GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhccC-------CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 4567899997755554444444444344332 234569999999999999999999976 3468999999
Q ss_pred hHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006535 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN 479 (641)
+|...++......-.+-|+.-. .-.+++||||+.+.++.. ...+.--++|.+ ...++-+|+++..
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~------~qeefFh~FN~l-------~~~~kqIvltsdr 217 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKER------TQEEFFHTFNAL-------LENGKQIVLTSDR 217 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChh------HHHHHHHHHHHH-------HhcCCEEEEEcCC
Confidence 9988877654444445566665 345999999999975432 122223333333 3344567777767
Q ss_pred CCCC---CChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 006535 480 RSDV---LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALL 554 (641)
Q Consensus 480 ~pd~---LD~ALlRpgRFd--~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~ 554 (641)
.|.. +.+.|.+ ||. ..+.+.+||.+.|..||+..+...++.+++++ +..+|.+... +.++|+.+++.....
T Consensus 218 ~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev-~~~la~~~~~-nvReLegaL~~l~~~ 293 (408)
T COG0593 218 PPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEV-LEFLAKRLDR-NVRELEGALNRLDAF 293 (408)
T ss_pred CchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHhhc-cHHHHHHHHHHHHHH
Confidence 7754 4588888 775 57788999999999999999998899988886 7778877664 889999999998888
Q ss_pred HHhcCCccccHHHHHHHHHHHhcchh
Q 006535 555 AGRLNKVVVEKIDFIHAVERSIAGIE 580 (641)
Q Consensus 555 A~r~~~~~It~~d~~eAl~rvi~g~~ 580 (641)
|...++ .||.+.+.+++.......+
T Consensus 294 a~~~~~-~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 294 ALFTKR-AITIDLVKEILKDLLRAGE 318 (408)
T ss_pred HHhcCc-cCcHHHHHHHHHHhhcccc
Confidence 866555 7888888888887766544
No 121
>PRK06620 hypothetical protein; Validated
Probab=99.57 E-value=6.1e-14 Score=141.40 Aligned_cols=199 Identities=14% Similarity=0.208 Sum_probs=129.9
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCC-CCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH
Q 006535 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARP-PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (641)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~-pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~ 404 (641)
.+..+|++++--+.-......+..+...+ +..+ -+.++||||||+|||+|++++++..+..++. .....
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~~-- 79 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQCGF------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFFN-- 79 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHHcc------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhhc--
Confidence 35568888764443222222222222211 1122 1579999999999999999999988764432 11110
Q ss_pred HhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCC-
Q 006535 405 YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDV- 483 (641)
Q Consensus 405 ~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~- 483 (641)
.+.+ . ...+|+|||||.+. . ..+-.++..+ ...+..+||+++..|..
T Consensus 80 ---------~~~~----~-~~d~lliDdi~~~~-----------~----~~lf~l~N~~---~e~g~~ilits~~~p~~l 127 (214)
T PRK06620 80 ---------EEIL----E-KYNAFIIEDIENWQ-----------E----PALLHIFNII---NEKQKYLLLTSSDKSRNF 127 (214)
T ss_pred ---------hhHH----h-cCCEEEEeccccch-----------H----HHHHHHHHHH---HhcCCEEEEEcCCCcccc
Confidence 0111 1 23599999999541 1 1222333322 23455788888766653
Q ss_pred -CChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCC
Q 006535 484 -LDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNK 560 (641)
Q Consensus 484 -LD~ALlRpgRFd--~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~ 560 (641)
+ ++|++ |+. ..+.+..|+.+++..+++.++...++.+++++ ++.|+.+..| +.+.+.++++.....+... +
T Consensus 128 ~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev-~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~-~ 201 (214)
T PRK06620 128 TL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQI-IDFLLVNLPR-EYSKIIEILENINYFALIS-K 201 (214)
T ss_pred ch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHccC-CHHHHHHHHHHHHHHHHHc-C
Confidence 5 78887 764 47899999999999999999987788888775 8888988876 8899999999865444433 3
Q ss_pred ccccHHHHHHHH
Q 006535 561 VVVEKIDFIHAV 572 (641)
Q Consensus 561 ~~It~~d~~eAl 572 (641)
..||...+.+++
T Consensus 202 ~~it~~~~~~~l 213 (214)
T PRK06620 202 RKITISLVKEVL 213 (214)
T ss_pred CCCCHHHHHHHh
Confidence 568888877765
No 122
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.56 E-value=1.2e-13 Score=145.45 Aligned_cols=98 Identities=20% Similarity=0.245 Sum_probs=84.0
Q ss_pred EEEEecCC------------CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCC
Q 006535 473 IVLGATNR------------SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (641)
Q Consensus 473 iVIaATN~------------pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfS 540 (641)
++|.|||+ |.-++..|+. |+ ..|...+++.++.++|++..+...++.++++ .++.|+.....-|
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~-Ale~L~~ig~etS 397 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDD-ALEYLTDIGEETS 397 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHH-HHHHHHhhchhhh
Confidence 67778886 6777888887 65 3677788999999999999999888888777 4888888887788
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 006535 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (641)
Q Consensus 541 gaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~r 574 (641)
-+...+|+.-|...|.+++...|..+|+++|.+-
T Consensus 398 LRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 398 LRYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred HHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 8999999999999999999999999999998754
No 123
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.56 E-value=4.3e-14 Score=154.44 Aligned_cols=188 Identities=20% Similarity=0.311 Sum_probs=126.6
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeE------Ee-ehhhHH
Q 006535 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI------SC-SASEFV 402 (641)
Q Consensus 330 tf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi------~v-s~se~~ 402 (641)
.|++|+|++.+++.|++++..-+.+ +...+.+.|.++||+||||+|||++|+++|+.+.+.-- .| +|..+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~--~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD--VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc--ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 5899999999999999999864332 23345567889999999999999999999997654310 00 000000
Q ss_pred H----------H-HhhcchHHHHHHHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC
Q 006535 403 E----------L-YVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD 467 (641)
Q Consensus 403 ~----------~-~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~ 467 (641)
. . -...+...+|++++.+... ...|+||||+|.+... ..|.||..|+...
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~---------------aanaLLk~LEep~ 145 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER---------------AANALLKAVEEPP 145 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH---------------HHHHHHHHhhcCC
Confidence 0 0 0112345688888877542 3459999999999532 2377888887543
Q ss_pred CCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHH
Q 006535 468 SNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLA 545 (641)
Q Consensus 468 ~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~ 545 (641)
.++++|.+|+.++.+.|.+++ |. ..+.|++|+.++..++|.... + +.++ ....++..+.|..+..+.
T Consensus 146 --~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~--~~~~-~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 146 --PRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---G--VDPE-TARRAARASQGHIGRARR 212 (394)
T ss_pred --CCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---C--CCHH-HHHHHHHHcCCCHHHHHH
Confidence 334444445448899999998 65 489999999998877776322 2 2222 356778888886654443
No 124
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.56 E-value=8.7e-14 Score=152.80 Aligned_cols=221 Identities=29% Similarity=0.343 Sum_probs=135.0
Q ss_pred ccc-ccCChHHHHHHHHHHHH----hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH-H
Q 006535 331 FAD-VAGVDEAKEELEEIVEF----LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-L 404 (641)
Q Consensus 331 f~D-V~G~ee~K~~L~eiv~~----L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~-~ 404 (641)
+++ |+|++++|+.|...+.. +........-......++||+||||||||++|+++|..++.||+.++++.+.+ .
T Consensus 69 L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~g 148 (412)
T PRK05342 69 LDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAG 148 (412)
T ss_pred HhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCC
Confidence 443 89999999999766532 11110000001123468999999999999999999999999999999988754 4
Q ss_pred HhhcchHH-HHHHHHHH----HhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC-----------C
Q 006535 405 YVGMGASR-VRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------S 468 (641)
Q Consensus 405 ~vG~~~~~-vr~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~-----------~ 468 (641)
|+|..... +..++..+ ....++||||||||.+..+.++.. ...+-..+.+.+.||..|++-. .
T Consensus 149 yvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~-~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~ 227 (412)
T PRK05342 149 YVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPS-ITRDVSGEGVQQALLKILEGTVASVPPQGGRKHP 227 (412)
T ss_pred cccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCC-cCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcC
Confidence 66765433 34444332 234678999999999987643210 0001111345677777776421 1
Q ss_pred CCcEEEEEecCCCC----------------------------------------------------CCChhhhCCCCcce
Q 006535 469 NSAVIVLGATNRSD----------------------------------------------------VLDPALRRPGRFDR 496 (641)
Q Consensus 469 ~~~ViVIaATN~pd----------------------------------------------------~LD~ALlRpgRFd~ 496 (641)
....++|.|+|... -+.|+++ ||+|.
T Consensus 228 ~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~ 305 (412)
T PRK05342 228 QQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPV 305 (412)
T ss_pred CCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCe
Confidence 12345566655400 0234443 49999
Q ss_pred EEEecCCCHHHHHHHHHH----HH-------hcCCCC--CCCCCCHHHHHHh--CCCCCHHHHHHHHHHHHHHH
Q 006535 497 VVMVETPDKIGREAILKV----HV-------SKKELP--LAKDIDLGDIASM--TTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 497 ~I~v~~Pd~~eR~eILk~----~l-------~~~~l~--l~~dvdl~~LA~~--T~GfSgaDL~~Lv~eAal~A 555 (641)
.+.+.+.+.++..+|+.. .+ ..+++. ++++ .++.|++. ..++-.+.|+.++++...-.
T Consensus 306 iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~-al~~Ia~~~~~~~~GAR~Lrriie~~l~~~ 378 (412)
T PRK05342 306 VATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDE-ALEAIAKKAIERKTGARGLRSILEEILLDV 378 (412)
T ss_pred eeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHH-HHHHHHHhCCCCCCCCchHHHHHHHHhHHH
Confidence 999999999999999873 22 222332 2222 25566654 33444577777776655443
No 125
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.4e-13 Score=157.67 Aligned_cols=216 Identities=16% Similarity=0.235 Sum_probs=149.9
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeE---------
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI--------- 394 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi--------- 394 (641)
+..++.+|+||+|++.+++.|+..+. ..+.+.++||+||+|||||++|+++|+.+.+.--
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~-----------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLR-----------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 44567899999999999998888664 2356778999999999999999999999866210
Q ss_pred --E----e-ehhhHHH-------HHhh---cchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHH
Q 006535 395 --S----C-SASEFVE-------LYVG---MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDERE 453 (641)
Q Consensus 395 --~----v-s~se~~~-------~~vG---~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~ 453 (641)
. + +|..+.. .+.+ .+...++++.+.+.. ....|++|||+|.+..
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~--------------- 141 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST--------------- 141 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH---------------
Confidence 0 0 1111110 0111 124567776655532 2234999999998842
Q ss_pred HHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHH
Q 006535 454 QTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIA 533 (641)
Q Consensus 454 ~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA 533 (641)
...+.|+..|+... ..+++|.+|+.+..|.+.+.+ |. ..+.+..++.++....+...+.+.+..++++ .++.|+
T Consensus 142 ~a~naLLK~LEePp--~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~e-al~~La 215 (620)
T PRK14954 142 AAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDAD-ALQLIA 215 (620)
T ss_pred HHHHHHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Confidence 23477888887543 345555566667888888887 43 4889999999999989988887777667655 477888
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHh-cCCccccHHHHHHHH
Q 006535 534 SMTTGFTGADLANLVNEAALLAGR-LNKVVVEKIDFIHAV 572 (641)
Q Consensus 534 ~~T~GfSgaDL~~Lv~eAal~A~r-~~~~~It~~d~~eAl 572 (641)
..+.| +.+++.+.++....++.. .....|+.+++.+.+
T Consensus 216 ~~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 216 RKAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 88865 778888888776666521 234568887776655
No 126
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=2e-13 Score=156.81 Aligned_cols=209 Identities=19% Similarity=0.228 Sum_probs=146.5
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEE------e-
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS------C- 396 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~------v- 396 (641)
++.++.+|++++|++++++.|...+..- +.+.++||+||+|+|||++|+++|+.+++.... +
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 4456789999999999999988887632 345579999999999999999999998652110 0
Q ss_pred ehh---hHH----------HHHhhcchHHHHHHHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHH
Q 006535 397 SAS---EFV----------ELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 459 (641)
Q Consensus 397 s~s---e~~----------~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqL 459 (641)
.|. .+. +.....+...+|++++.+... ...|++|||+|.|.. ...+.|
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~---------------~a~naL 141 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST---------------AAFNAL 141 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH---------------HHHHHH
Confidence 111 000 011223456788888777532 235999999998842 345788
Q ss_pred HhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCC
Q 006535 460 LTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF 539 (641)
Q Consensus 460 L~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~Gf 539 (641)
|..|+. ....+++|++|+.++.+.+.+++ |. ..+.|..++.++....+...+.+.++.+.++. +..+++.+.|
T Consensus 142 LK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~a-l~~La~~s~G- 214 (620)
T PRK14948 142 LKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEA-LTLVAQRSQG- 214 (620)
T ss_pred HHHHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCC-
Confidence 888884 33457777777788888889887 65 47889999998888888888877666665553 7778888876
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccccHHHHHH
Q 006535 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (641)
Q Consensus 540 SgaDL~~Lv~eAal~A~r~~~~~It~~d~~e 570 (641)
+.+++.++++...+.. ..|+.+++.+
T Consensus 215 ~lr~A~~lLeklsL~~-----~~It~e~V~~ 240 (620)
T PRK14948 215 GLRDAESLLDQLSLLP-----GPITPEAVWD 240 (620)
T ss_pred CHHHHHHHHHHHHhcc-----CCCCHHHHHH
Confidence 6677777777654331 2355555443
No 127
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=3.1e-13 Score=154.82 Aligned_cols=213 Identities=19% Similarity=0.228 Sum_probs=146.3
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeE-----Eee
Q 006535 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI-----SCS 397 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi-----~vs 397 (641)
++...+.+|+||+|++.+++.|+..+.. .+.+..+||+||||+|||++|+++|+.+++..- .|.
T Consensus 7 ~~kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 7 YRKWRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 3455778999999999999998877752 234567899999999999999999998754221 010
Q ss_pred -h---hhHHHH----------HhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHH
Q 006535 398 -A---SEFVEL----------YVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 459 (641)
Q Consensus 398 -~---se~~~~----------~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqL 459 (641)
| ..+... ....+...++++.+.+.. ....||+|||+|.|.. ..++.|
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~---------------~a~naL 140 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST---------------AAFNAL 140 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH---------------HHHHHH
Confidence 1 111100 001223455665554432 2234999999998842 235778
Q ss_pred HhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCC
Q 006535 460 LTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGF 539 (641)
Q Consensus 460 L~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~Gf 539 (641)
+..++... ...++|.+++..+.+.+.+++ |.. .+.|..++..+...++...+.+.++.++++ .+..|+..+.|
T Consensus 141 Lk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~e-al~~La~~s~G- 213 (585)
T PRK14950 141 LKTLEEPP--PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPG-ALEAIARAATG- 213 (585)
T ss_pred HHHHhcCC--CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-
Confidence 88887543 345666666777778888877 553 788999999999999999888777777655 37788888776
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006535 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 540 SgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl 572 (641)
+.+++.+.++....+ ....|+.+++.+.+
T Consensus 214 dlr~al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 214 SMRDAENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred CHHHHHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 888888888875543 23458887766543
No 128
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.53 E-value=5.4e-14 Score=150.50 Aligned_cols=220 Identities=22% Similarity=0.323 Sum_probs=134.9
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-------CCCeEEe--e
Q 006535 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISC--S 397 (641)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-------g~pfi~v--s 397 (641)
.+..|++|+|++++++.|.-.+. ++ ...++||+||||||||++|+++|+-+ ++|+-.. .
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~---~~---------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAI---DP---------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHh---cc---------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 45689999999999987764321 11 12469999999999999999999987 3322111 1
Q ss_pred h-hhH---------------HHHHhhcchHHHHH--HHHHH-----------H--hcCCceEEEcchhhhhhhcCCcccc
Q 006535 398 A-SEF---------------VELYVGMGASRVRD--LFARA-----------K--KEAPSIIFIDEIDAVAKSRDGRFRI 446 (641)
Q Consensus 398 ~-se~---------------~~~~vG~~~~~vr~--lF~~A-----------~--~~aP~ILfIDEIDaL~~~r~~~~~~ 446 (641)
+ .++ ...-.+.++..+-. .++.+ . .....+||+|||+.+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~------- 143 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDH------- 143 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHH-------
Confidence 0 000 00000111111110 01111 0 011249999999998543
Q ss_pred cchhHHHHHHHHHHhhhcCC-----------CCCCcEEEEEecCCCC-CCChhhhCCCCcceEEEecCCCH-HHHHHHHH
Q 006535 447 VSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETPDK-IGREAILK 513 (641)
Q Consensus 447 ~~~~e~~~~LnqLL~emd~~-----------~~~~~ViVIaATN~pd-~LD~ALlRpgRFd~~I~v~~Pd~-~eR~eILk 513 (641)
+.+.|+..|+.- .....+++|+++|..+ .++++++. ||...+.+++|.. ++|.+|++
T Consensus 144 --------~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~ 213 (334)
T PRK13407 144 --------IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIR 213 (334)
T ss_pred --------HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHH
Confidence 334555555422 1235789999999754 68999999 9999999998876 89999998
Q ss_pred HHHhcCC-----------------------------CCCCCCC--CHHHHHHhCC-CCCHHHHHHHHHHHHHHHHhcCCc
Q 006535 514 VHVSKKE-----------------------------LPLAKDI--DLGDIASMTT-GFTGADLANLVNEAALLAGRLNKV 561 (641)
Q Consensus 514 ~~l~~~~-----------------------------l~l~~dv--dl~~LA~~T~-GfSgaDL~~Lv~eAal~A~r~~~~ 561 (641)
....... +.+++++ .+..++..+. .-.-+++. +++.|...|..+++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~ 292 (334)
T PRK13407 214 RRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAE 292 (334)
T ss_pred HhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCC
Confidence 7543210 0111110 0122222322 11335555 999999999999999
Q ss_pred cccHHHHHHHHHHHh
Q 006535 562 VVEKIDFIHAVERSI 576 (641)
Q Consensus 562 ~It~~d~~eAl~rvi 576 (641)
.|+.+|+.++..-++
T Consensus 293 ~V~~~Di~~~~~~vl 307 (334)
T PRK13407 293 AVGRSHLRSVATMAL 307 (334)
T ss_pred eeCHHHHHHHHHHhh
Confidence 999999988876554
No 129
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.52 E-value=3.3e-13 Score=137.54 Aligned_cols=195 Identities=23% Similarity=0.360 Sum_probs=137.6
Q ss_pred CCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhH
Q 006535 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (641)
Q Consensus 325 ~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~ 401 (641)
..+.+.+++++|.++.|+.|.+-...+.. ..+..++||+|++|||||+++|++..+. |..++.+...++
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 34678999999999999998876655332 3577899999999999999999999875 788899887766
Q ss_pred HHHHhhcchHHHHHHHHHHH-hcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC--CCCCcEEEEEec
Q 006535 402 VELYVGMGASRVRDLFARAK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--DSNSAVIVLGAT 478 (641)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~--~~~~~ViVIaAT 478 (641)
.. +.++++..+ ...+-|||+||+- + . .+ +.....|-..|||- ....+|++.||+
T Consensus 92 ~~---------l~~l~~~l~~~~~kFIlf~DDLs-F--e--------~~---d~~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 92 GD---------LPELLDLLRDRPYKFILFCDDLS-F--E--------EG---DTEYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred cc---------HHHHHHHHhcCCCCEEEEecCCC-C--C--------CC---cHHHHHHHHHhcCccccCCCcEEEEEec
Confidence 43 345555554 2345699999863 1 1 11 12234555556653 345689999999
Q ss_pred CCCCCCChhhh---------------------CCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCC-CCHH--HHHH
Q 006535 479 NRSDVLDPALR---------------------RPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-IDLG--DIAS 534 (641)
Q Consensus 479 N~pd~LD~ALl---------------------RpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~d-vdl~--~LA~ 534 (641)
|+-+.+++... -..||...+.|.+|+.++-.+|++.++.+.+++++.+ ..-. ..|.
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~ 228 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWAL 228 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 98544432221 1239999999999999999999999998888777542 1111 2244
Q ss_pred hCCCCCHHHHHHHHHH
Q 006535 535 MTTGFTGADLANLVNE 550 (641)
Q Consensus 535 ~T~GfSgaDL~~Lv~e 550 (641)
...|.||+-..+.++.
T Consensus 229 ~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 229 RRGGRSGRTARQFIDD 244 (249)
T ss_pred HcCCCCHHHHHHHHHH
Confidence 5566788777766554
No 130
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.51 E-value=5.2e-13 Score=138.40 Aligned_cols=184 Identities=25% Similarity=0.262 Sum_probs=115.5
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehh------hHHHHHhhcchHHHHH--------------------HHHH
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS------EFVELYVGMGASRVRD--------------------LFAR 419 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~s------e~~~~~vG~~~~~vr~--------------------lF~~ 419 (641)
.++||+||||||||++|+++|..+|.||+.++|. +++..+.+.....+.+ .+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 4699999999999999999999999999998764 3333332221111111 1122
Q ss_pred HHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC--------------CCCCcEEEEEecCCC----
Q 006535 420 AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--------------DSNSAVIVLGATNRS---- 481 (641)
Q Consensus 420 A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~--------------~~~~~ViVIaATN~p---- 481 (641)
|... ..+|+|||||.+.+. +.+.|+..|+.. ....++.||+|+|..
T Consensus 102 A~~~-g~~lllDEi~r~~~~---------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g 165 (262)
T TIGR02640 102 AVRE-GFTLVYDEFTRSKPE---------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAG 165 (262)
T ss_pred HHHc-CCEEEEcchhhCCHH---------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccc
Confidence 2222 359999999987432 223344444321 122467899999976
Q ss_pred -CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHH---HH--h-C---CCCCHHHHHHHHHHH
Q 006535 482 -DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDI---AS--M-T---TGFTGADLANLVNEA 551 (641)
Q Consensus 482 -d~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~L---A~--~-T---~GfSgaDL~~Lv~eA 551 (641)
..++++|++ || ..+.++.|+.++..+|++.+.. ++++ ..+.+ +. + . ...+.+.+ +.-|
T Consensus 166 ~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~-----~~~~-~~~~iv~~~~~~R~~~~~~~~~~r~~---i~~~ 233 (262)
T TIGR02640 166 VHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD-----VAED-SAATIVRLVREFRASGDEITSGLRAS---LMIA 233 (262)
T ss_pred eecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC-----CCHH-HHHHHHHHHHHHHhhCCccCCcHHHH---HHHH
Confidence 367899998 88 5889999999999999998752 2222 12222 11 1 1 12333444 4434
Q ss_pred HHHHHhcCCccccHHHHHHHHHHHhc
Q 006535 552 ALLAGRLNKVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 552 al~A~r~~~~~It~~d~~eAl~rvi~ 577 (641)
...+....+..++.+||.+....++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 234 EVATQQDIPVDVDDEDFVDLCIDILA 259 (262)
T ss_pred HHHHHcCCCCCCCcHHHHHHHHHHhc
Confidence 44444445778888999888877654
No 131
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.51 E-value=6e-13 Score=153.11 Aligned_cols=217 Identities=25% Similarity=0.329 Sum_probs=139.6
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc----------CCCeEE
Q 006535 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFIS 395 (641)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------g~pfi~ 395 (641)
..+.+|++++|++++.+.+.+.+. . ..+.+++|+||||||||++|+++++.. +.+|+.
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia---~---------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVA---S---------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHh---c---------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 356789999999998887654432 1 234579999999999999999998755 468999
Q ss_pred eehhhHH-------HHHhhcchHH----HHHHHHH----------HHhcCCceEEEcchhhhhhhcCCcccccchhHHHH
Q 006535 396 CSASEFV-------ELYVGMGASR----VRDLFAR----------AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQ 454 (641)
Q Consensus 396 vs~se~~-------~~~vG~~~~~----vr~lF~~----------A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~ 454 (641)
++|..+. ....+..... .+..+.. .......+|||||++.|....+
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q------------- 282 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQ------------- 282 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHH-------------
Confidence 9987541 1111211100 0111110 0012245999999998854332
Q ss_pred HHHHHHhhhcC--------------------------CCCCCcEEEEEec-CCCCCCChhhhCCCCcceEEEecCCCHHH
Q 006535 455 TLNQLLTEMDG--------------------------FDSNSAVIVLGAT-NRSDVLDPALRRPGRFDRVVMVETPDKIG 507 (641)
Q Consensus 455 ~LnqLL~emd~--------------------------~~~~~~ViVIaAT-N~pd~LD~ALlRpgRFd~~I~v~~Pd~~e 507 (641)
..|+..|+. ......+++|++| +.++.++++|++ ||. .+.+++++.++
T Consensus 283 --~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~ed 357 (615)
T TIGR02903 283 --NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPED 357 (615)
T ss_pred --HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHH
Confidence 222222221 0112346666654 567889999988 886 67889999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHh--------cCCccccHHHHHHHHHHH
Q 006535 508 REAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGR--------LNKVVVEKIDFIHAVERS 575 (641)
Q Consensus 508 R~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r--------~~~~~It~~d~~eAl~rv 575 (641)
..+|++..+.+.++.+.++ .++.|+..+. .++...+++..+...+.. .....|+.+|+++++...
T Consensus 358 i~~Il~~~a~~~~v~ls~e-al~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 358 IALIVLNAAEKINVHLAAG-VEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 9999999988766556554 3666777654 566666777666544321 123478999999988753
No 132
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.51 E-value=2.8e-13 Score=151.20 Aligned_cols=198 Identities=22% Similarity=0.306 Sum_probs=153.9
Q ss_pred CCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-------eEEee
Q 006535 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISCS 397 (641)
Q Consensus 325 ~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p-------fi~vs 397 (641)
..++.+|+|++|++.+...|...+..- +...+.||.||.|||||++||.+|..+++. +..|.
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 345678999999999999999988753 344568999999999999999999987654 21111
Q ss_pred -hh--------hHHH--HHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhh
Q 006535 398 -AS--------EFVE--LYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (641)
Q Consensus 398 -~s--------e~~~--~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~e 462 (641)
|. ++++ .-...+.+.+|++.+.+.. ....|.+|||+|.|. .+..|.||..
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS---------------~~afNALLKT 142 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS---------------KQAFNALLKT 142 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh---------------HHHHHHHhcc
Confidence 11 1111 1122356778888887753 334599999999985 3456999999
Q ss_pred hcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHH
Q 006535 463 MDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGA 542 (641)
Q Consensus 463 md~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSga 542 (641)
++ ++...|++|.||..++.+++.+++ |- .++.+...+.++....|...+.++++..+++ .+..+|+...| |.+
T Consensus 143 LE--EPP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~-aL~~ia~~a~G-s~R 215 (515)
T COG2812 143 LE--EPPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEED-ALSLIARAAEG-SLR 215 (515)
T ss_pred cc--cCccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHH-HHHHHHHHcCC-Chh
Confidence 88 556689999999999999999988 43 2567889999999999999999998888766 48888999888 899
Q ss_pred HHHHHHHHHHHHH
Q 006535 543 DLANLVNEAALLA 555 (641)
Q Consensus 543 DL~~Lv~eAal~A 555 (641)
|...+++.|....
T Consensus 216 DalslLDq~i~~~ 228 (515)
T COG2812 216 DALSLLDQAIAFG 228 (515)
T ss_pred hHHHHHHHHHHcc
Confidence 9999999988665
No 133
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.1e-12 Score=140.04 Aligned_cols=221 Identities=21% Similarity=0.275 Sum_probs=155.1
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----eEEeehhhHHHHH
Q 006535 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-----FISCSASEFVELY 405 (641)
Q Consensus 331 f~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p-----fi~vs~se~~~~~ 405 (641)
-+.+.+.++..+++..++.... ....|.++++|||||||||.+++.++.++.-+ ++++||..+.+.+
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~--------~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 16 PEELPHREEEINQLASFLAPAL--------RGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccccHHHHHHHHHHHHHHh--------cCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 3448899998888877755422 23456679999999999999999999987433 8999997554322
Q ss_pred ---------------hhcchHHH-HHHHHHHHh-cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCC
Q 006535 406 ---------------VGMGASRV-RDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS 468 (641)
Q Consensus 406 ---------------vG~~~~~v-r~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~ 468 (641)
.|.....+ ..+++.... ...-||++||+|.|....+ .++..|+...+..
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~------------~~LY~L~r~~~~~-- 153 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG------------EVLYSLLRAPGEN-- 153 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc------------hHHHHHHhhcccc--
Confidence 11222222 222222222 3455999999999975432 5677777776655
Q ss_pred CCcEEEEEecCCC---CCCChhhhCCCCc-ceEEEecCCCHHHHHHHHHHHHhcC--CCCCCCCCCHHHHH---HhCCCC
Q 006535 469 NSAVIVLGATNRS---DVLDPALRRPGRF-DRVVMVETPDKIGREAILKVHVSKK--ELPLAKDIDLGDIA---SMTTGF 539 (641)
Q Consensus 469 ~~~ViVIaATN~p---d~LD~ALlRpgRF-d~~I~v~~Pd~~eR~eILk~~l~~~--~l~l~~dvdl~~LA---~~T~Gf 539 (641)
..++.+|+.+|.. +.+|+.+.+ +| ...|.|++++.+|..+|++..+... ...+++++ ++.+| ....|
T Consensus 154 ~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~v-l~lia~~~a~~~G- 229 (366)
T COG1474 154 KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDV-LKLIAALVAAESG- 229 (366)
T ss_pred ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccH-HHHHHHHHHHcCc-
Confidence 5678899999876 578898887 44 2458999999999999999988641 12233332 33333 34444
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhc
Q 006535 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 540 SgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~rvi~ 577 (641)
+.+-...+++.|+..|.+++...++.+++..|.+..-.
T Consensus 230 DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~ 267 (366)
T COG1474 230 DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIER 267 (366)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhH
Confidence 56777889999999999999999999999999555433
No 134
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.49 E-value=5.2e-13 Score=145.49 Aligned_cols=175 Identities=30% Similarity=0.405 Sum_probs=126.3
Q ss_pred cccCChHHHHHHHHHHHH-hcChhHHhhhC-CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH-HHhh-c
Q 006535 333 DVAGVDEAKEELEEIVEF-LRSPDKYIRLG-ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVG-M 408 (641)
Q Consensus 333 DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg-~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~-~~vG-~ 408 (641)
.|+|++++|+.+...+.. ++.......+. ...|.++||+||||||||++|+++|..++.||+.+++++|.+ .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 399999999999776632 11110000000 123689999999999999999999999999999999998886 5777 3
Q ss_pred chHHHHHHHHHHH-------------------------------------------------------------------
Q 006535 409 GASRVRDLFARAK------------------------------------------------------------------- 421 (641)
Q Consensus 409 ~~~~vr~lF~~A~------------------------------------------------------------------- 421 (641)
.+..++++|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4566666666661
Q ss_pred -----------------------------------------------------------------------hcCCceEEE
Q 006535 422 -----------------------------------------------------------------------KEAPSIIFI 430 (641)
Q Consensus 422 -----------------------------------------------------------------------~~aP~ILfI 430 (641)
...-.||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 012349999
Q ss_pred cchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC--------CCCCcEEEEEec----CCCCCCChhhhCCCCcceEE
Q 006535 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--------DSNSAVIVLGAT----NRSDVLDPALRRPGRFDRVV 498 (641)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~--------~~~~~ViVIaAT----N~pd~LD~ALlRpgRFd~~I 498 (641)
||||.++.+.+.. +.+-..+.+-..||..++|- -...+|++||+. ..|++|-|.|.- ||...+
T Consensus 256 DEiDKIa~~~~~~---~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v 330 (443)
T PRK05201 256 DEIDKIAARGGSS---GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRV 330 (443)
T ss_pred EcchhhcccCCCC---CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEE
Confidence 9999999765321 22222345667888888873 234678899876 346667788865 999999
Q ss_pred EecCCCHHHHHHHH
Q 006535 499 MVETPDKIGREAIL 512 (641)
Q Consensus 499 ~v~~Pd~~eR~eIL 512 (641)
.+..++.++...||
T Consensus 331 ~L~~L~~~dL~~IL 344 (443)
T PRK05201 331 ELDALTEEDFVRIL 344 (443)
T ss_pred ECCCCCHHHHHHHh
Confidence 99999999998887
No 135
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.48 E-value=5e-13 Score=146.47 Aligned_cols=219 Identities=28% Similarity=0.354 Sum_probs=133.5
Q ss_pred ccCChHHHHHHHHHHHH----hcCh-hHHhhhCC-CCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH-HHh
Q 006535 334 VAGVDEAKEELEEIVEF----LRSP-DKYIRLGA-RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYV 406 (641)
Q Consensus 334 V~G~ee~K~~L~eiv~~----L~~p-~~~~~lg~-~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~-~~v 406 (641)
|+|++++++.+...+.. +... ..-..-+. ....++||+||||||||++|+++|..++.||..+++..+.. .|+
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 79999999998776622 1110 00000000 12468999999999999999999999999999999887653 466
Q ss_pred hcc-hHHHHHHHHHH----HhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC-----------CCC
Q 006535 407 GMG-ASRVRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNS 470 (641)
Q Consensus 407 G~~-~~~vr~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~-----------~~~ 470 (641)
|.. +..+..++..+ ....++||||||||.+.+++.+.. ...+-..+.+.+.||..|++.. +..
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s-~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPS-ITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhcccc-ccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 664 33344444322 234578999999999987543211 0011111245566777766532 123
Q ss_pred cEEEEEecCCC---------------------------C-----------------------CCChhhhCCCCcceEEEe
Q 006535 471 AVIVLGATNRS---------------------------D-----------------------VLDPALRRPGRFDRVVMV 500 (641)
Q Consensus 471 ~ViVIaATN~p---------------------------d-----------------------~LD~ALlRpgRFd~~I~v 500 (641)
+.++|.|+|-. + .+.|+++ ||+|..+.+
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeec
Confidence 56777777751 0 0224444 499999999
Q ss_pred cCCCHHHHHHHHHHH----Hhc-------CCCC--CCCCCCHHHHHHh--CCCCCHHHHHHHHHHHHHHHH
Q 006535 501 ETPDKIGREAILKVH----VSK-------KELP--LAKDIDLGDIASM--TTGFTGADLANLVNEAALLAG 556 (641)
Q Consensus 501 ~~Pd~~eR~eILk~~----l~~-------~~l~--l~~dvdl~~LA~~--T~GfSgaDL~~Lv~eAal~A~ 556 (641)
.+.+.++..+|+... +++ +++. ++++ .++.||+. ...+-.+.|+.++++...-+.
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~-a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m 385 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEE-ALKAIAKKALERKTGARGLRSIVEGLLLDVM 385 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHH-HHHHHHHhCCCCCCCchHHHHHHHHhhHHHH
Confidence 999999999988752 211 1222 2222 25556654 334455777777777655443
No 136
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.48 E-value=4.8e-13 Score=145.69 Aligned_cols=175 Identities=33% Similarity=0.459 Sum_probs=124.3
Q ss_pred cccCChHHHHHHHHHHHH-hcChhHHhhh-CCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH-HHhh-c
Q 006535 333 DVAGVDEAKEELEEIVEF-LRSPDKYIRL-GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVG-M 408 (641)
Q Consensus 333 DV~G~ee~K~~L~eiv~~-L~~p~~~~~l-g~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~-~~vG-~ 408 (641)
-|+|++++|+.+...+.. ++.......+ ..-.|+++||+||||||||++|+++|..++.||+.+++..+.+ .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 389999999998766642 1111100011 1235789999999999999999999999999999999887764 5666 3
Q ss_pred chHHHHHHHHHHH-------------------------------------------------------------------
Q 006535 409 GASRVRDLFARAK------------------------------------------------------------------- 421 (641)
Q Consensus 409 ~~~~vr~lF~~A~------------------------------------------------------------------- 421 (641)
.+..++.+|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 4555666655540
Q ss_pred ------------------------------------------------------------------------hcCCceEE
Q 006535 422 ------------------------------------------------------------------------KEAPSIIF 429 (641)
Q Consensus 422 ------------------------------------------------------------------------~~aP~ILf 429 (641)
.....|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01234999
Q ss_pred EcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC--------CCCcEEEEEecC----CCCCCChhhhCCCCcceE
Q 006535 430 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVLGATN----RSDVLDPALRRPGRFDRV 497 (641)
Q Consensus 430 IDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~--------~~~~ViVIaATN----~pd~LD~ALlRpgRFd~~ 497 (641)
|||||.++.+.... +.+-..+.+-..||..++|-. ...+|++||+.- .|++|=|.|. |||...
T Consensus 253 iDEiDKIa~~~~~~---~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~ 327 (441)
T TIGR00390 253 IDEIDKIAKKGESS---GADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIR 327 (441)
T ss_pred EEchhhhcccCCCC---CCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceE
Confidence 99999999765221 122223456678888888732 246788998863 4566767776 599999
Q ss_pred EEecCCCHHHHHHHH
Q 006535 498 VMVETPDKIGREAIL 512 (641)
Q Consensus 498 I~v~~Pd~~eR~eIL 512 (641)
+.+..++.++...||
T Consensus 328 v~L~~L~~edL~rIL 342 (441)
T TIGR00390 328 VELQALTTDDFERIL 342 (441)
T ss_pred EECCCCCHHHHHHHh
Confidence 999999999998887
No 137
>PRK09087 hypothetical protein; Validated
Probab=99.48 E-value=3.5e-13 Score=136.99 Aligned_cols=173 Identities=17% Similarity=0.192 Sum_probs=120.1
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCccc
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFR 445 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~ 445 (641)
+.++|+||+|+|||+|+++++...++.++ +..++...+. ..... .+|+|||+|.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~~~~~-----------~~~~~---~~l~iDDi~~~~~------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIGSDAA-----------NAAAE---GPVLIEDIDAGGF------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcchHHH-----------Hhhhc---CeEEEECCCCCCC-------
Confidence 34999999999999999999998766544 4333322221 11111 3789999997621
Q ss_pred ccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC---CCChhhhCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCC
Q 006535 446 IVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD---VLDPALRRPGRFD--RVVMVETPDKIGREAILKVHVSKKE 520 (641)
Q Consensus 446 ~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd---~LD~ALlRpgRFd--~~I~v~~Pd~~eR~eILk~~l~~~~ 520 (641)
...+ |+..++........+||+++..|. ...+.|++ ||. ..+++..|+.++|.++++.++...+
T Consensus 102 --~~~~-------lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~ 170 (226)
T PRK09087 102 --DETG-------LFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQ 170 (226)
T ss_pred --CHHH-------HHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcC
Confidence 1112 222222222334567777766554 23677887 764 6899999999999999999999888
Q ss_pred CCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHH
Q 006535 521 LPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (641)
Q Consensus 521 l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~rv 575 (641)
+.+++++ ++.|+++..+ +.+.+..+++.....+...+ ..||...+.+++...
T Consensus 171 ~~l~~ev-~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 171 LYVDPHV-VYYLVSRMER-SLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred CCCCHHH-HHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 8888775 8888988875 77888887777766665544 558998888888654
No 138
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.48 E-value=2.9e-13 Score=145.42 Aligned_cols=222 Identities=22% Similarity=0.272 Sum_probs=141.3
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-------CCCeEEee--
Q 006535 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCS-- 397 (641)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-------g~pfi~vs-- 397 (641)
+...|++|+|++++|..|.-.+ .+| ...|+||.||+|||||++|++++..+ +.||....
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~---~~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNV---IDP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhc---cCC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 4568999999999998765443 232 23589999999999999999998765 23443100
Q ss_pred ----hhhHHHHH-------------------hhcchHHH------HHHHHHHH---------hcCCceEEEcchhhhhhh
Q 006535 398 ----ASEFVELY-------------------VGMGASRV------RDLFARAK---------KEAPSIIFIDEIDAVAKS 439 (641)
Q Consensus 398 ----~se~~~~~-------------------vG~~~~~v------r~lF~~A~---------~~aP~ILfIDEIDaL~~~ 439 (641)
+++..... .+.++.++ ...|.... .....+||+|||+.+...
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~ 159 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDH 159 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHH
Confidence 00111100 11122221 11111111 111249999999998654
Q ss_pred cCCcccccchhHHHHHHHHHHhhhcC---------C--CCCCcEEEEEecCCCC-CCChhhhCCCCcceEEEecCCC-HH
Q 006535 440 RDGRFRIVSNDEREQTLNQLLTEMDG---------F--DSNSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETPD-KI 506 (641)
Q Consensus 440 r~~~~~~~~~~e~~~~LnqLL~emd~---------~--~~~~~ViVIaATN~pd-~LD~ALlRpgRFd~~I~v~~Pd-~~ 506 (641)
.+ ..|+..|+. . ....++++|++.|..+ .+.++++. ||...+.+..|+ .+
T Consensus 160 ~Q---------------~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~ 222 (350)
T CHL00081 160 LV---------------DILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPE 222 (350)
T ss_pred HH---------------HHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChH
Confidence 32 334444432 1 1235788999888765 69999999 999999999997 58
Q ss_pred HHHHHHHHHHhcC-----------------------------CCCCCCCC--CHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 006535 507 GREAILKVHVSKK-----------------------------ELPLAKDI--DLGDIASMTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 507 eR~eILk~~l~~~-----------------------------~l~l~~dv--dl~~LA~~T~GfSgaDL~~Lv~eAal~A 555 (641)
.+.+|++...... .+.+++++ .+..++..+.--+++--..+++.|...|
T Consensus 223 ~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~A 302 (350)
T CHL00081 223 LRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALA 302 (350)
T ss_pred HHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHH
Confidence 9999998754211 01111111 0222333443336677777888889999
Q ss_pred HhcCCccccHHHHHHHHHHHhc
Q 006535 556 GRLNKVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 556 ~r~~~~~It~~d~~eAl~rvi~ 577 (641)
..+++..|+.+|+..+..-++.
T Consensus 303 al~GR~~V~pdDv~~~a~~vL~ 324 (350)
T CHL00081 303 AFEGRTEVTPKDIFKVITLCLR 324 (350)
T ss_pred HHcCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999987765
No 139
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.47 E-value=5.8e-13 Score=142.79 Aligned_cols=216 Identities=24% Similarity=0.281 Sum_probs=137.5
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-------CCCeE--------
Q 006535 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFI-------- 394 (641)
Q Consensus 330 tf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-------g~pfi-------- 394 (641)
.|..|+|++++|..|.-.+ -+| ...+++|.|+||+|||+|++++++.+ +.|+-
T Consensus 2 pf~~ivgq~~~~~al~~~~---~~~---------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNV---IDP---------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHh---cCC---------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 4789999999998664322 122 23579999999999999999999866 33332
Q ss_pred -EeehhhH----------------HHHHhhcchHHHHH------------------HHHHHHhcCCceEEEcchhhhhhh
Q 006535 395 -SCSASEF----------------VELYVGMGASRVRD------------------LFARAKKEAPSIIFIDEIDAVAKS 439 (641)
Q Consensus 395 -~vs~se~----------------~~~~vG~~~~~vr~------------------lF~~A~~~aP~ILfIDEIDaL~~~ 439 (641)
..+|... .+.-.+.++..+-. ++.+| ...+||||||+.+...
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L~~~ 146 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLLEDH 146 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhCCHH
Confidence 1111110 11111111111111 11112 1359999999998543
Q ss_pred cCCcccccchhHHHHHHHHHHhhhcCC-----------CCCCcEEEEEecCCCC-CCChhhhCCCCcceEEEecCCCH-H
Q 006535 440 RDGRFRIVSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRSD-VLDPALRRPGRFDRVVMVETPDK-I 506 (641)
Q Consensus 440 r~~~~~~~~~~e~~~~LnqLL~emd~~-----------~~~~~ViVIaATN~pd-~LD~ALlRpgRFd~~I~v~~Pd~-~ 506 (641)
. ...|+..|+.- ....++++|+++|..+ .++++|+. ||...+.++.|+. +
T Consensus 147 ~---------------Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~e 209 (337)
T TIGR02030 147 L---------------VDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVE 209 (337)
T ss_pred H---------------HHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHH
Confidence 2 24444444321 1234688999988765 79999999 9999999999875 8
Q ss_pred HHHHHHHHHHhcC-----------------------------CCCCCCCC--CHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 006535 507 GREAILKVHVSKK-----------------------------ELPLAKDI--DLGDIASMTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 507 eR~eILk~~l~~~-----------------------------~l~l~~dv--dl~~LA~~T~GfSgaDL~~Lv~eAal~A 555 (641)
+|.+|++...... .+.+++++ .+..++..+..-+.+-...+++.|...|
T Consensus 210 er~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~A 289 (337)
T TIGR02030 210 LRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALA 289 (337)
T ss_pred HHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHH
Confidence 8889988743210 01111111 1223334443336677788889999999
Q ss_pred HhcCCccccHHHHHHHHHHHhc
Q 006535 556 GRLNKVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 556 ~r~~~~~It~~d~~eAl~rvi~ 577 (641)
..+++..|+.+|+..++.-++.
T Consensus 290 al~GR~~V~~dDv~~~a~~vL~ 311 (337)
T TIGR02030 290 AFEGRTEVTVDDIRRVAVLALR 311 (337)
T ss_pred HHcCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999887764
No 140
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.6e-12 Score=149.32 Aligned_cols=211 Identities=19% Similarity=0.260 Sum_probs=145.8
Q ss_pred CCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEE--------e
Q 006535 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS--------C 396 (641)
Q Consensus 325 ~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~--------v 396 (641)
...+.+|+||+|++.+++.|...+.. .+.+..+|||||+|+|||++|+++|..+.+.... |
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C 78 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC 78 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc
Confidence 34567999999999999988887752 3466779999999999999999999987532100 0
Q ss_pred -ehhhHHHH-------Hh---hcchHHHHHHHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHh
Q 006535 397 -SASEFVEL-------YV---GMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (641)
Q Consensus 397 -s~se~~~~-------~v---G~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~ 461 (641)
+|..+.+. +. ..+...++++.+.+... ..-|++|||+|.|.. ...+.|+.
T Consensus 79 ~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~---------------~a~naLLK 143 (614)
T PRK14971 79 ESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ---------------AAFNAFLK 143 (614)
T ss_pred hHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH---------------HHHHHHHH
Confidence 11111110 00 11245677777666432 223999999998842 23477888
Q ss_pred hhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCH
Q 006535 462 EMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (641)
Q Consensus 462 emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSg 541 (641)
.|+... ...++|.+|+.+..|-+.+++ |. ..+.|.+++.++....++..+.+.++.++++ .+..|+..+.| +.
T Consensus 144 ~LEepp--~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~-al~~La~~s~g-dl 216 (614)
T PRK14971 144 TLEEPP--SYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPE-ALNVIAQKADG-GM 216 (614)
T ss_pred HHhCCC--CCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CH
Confidence 888543 345666666667888899988 54 3789999999999999999888877776654 47788888765 77
Q ss_pred HHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006535 542 ADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 542 aDL~~Lv~eAal~A~r~~~~~It~~d~~eAl 572 (641)
+++.++++.....+ +.. |+.+++.+.+
T Consensus 217 r~al~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 217 RDALSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred HHHHHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 77777777766554 222 6666555443
No 141
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.46 E-value=1.5e-12 Score=152.34 Aligned_cols=165 Identities=22% Similarity=0.332 Sum_probs=115.6
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH-----HHhh
Q 006535 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-----LYVG 407 (641)
Q Consensus 333 DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~-----~~vG 407 (641)
.|+|++++++.|.+.+...+..-. . ..++...+||+||||||||.+|+++|..++.+|+.++++++.+ .+.|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~--~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG--H-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc--C-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 489999999999988875432100 0 0122346999999999999999999999999999999998754 3333
Q ss_pred cchH-----HHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC---------CCCcEE
Q 006535 408 MGAS-----RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SNSAVI 473 (641)
Q Consensus 408 ~~~~-----~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~---------~~~~Vi 473 (641)
.... .-..+.+..+....|||||||||.+.+ .+.+.|++.||.-. .-.+++
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~---------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~i 600 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP---------------DVFNLLLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH---------------HHHHHHHHHHhcCeeecCCCceecCCCcE
Confidence 2111 111223333455568999999999853 24566666665321 114678
Q ss_pred EEEecCCC-------------------------CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHh
Q 006535 474 VLGATNRS-------------------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS 517 (641)
Q Consensus 474 VIaATN~p-------------------------d~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~ 517 (641)
+|+|||.- ..+.|.++. |+|..|.|++.+.++..+|+...+.
T Consensus 601 iI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred EEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 99999832 125577777 9999999999999999999887664
No 142
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.44 E-value=1.8e-12 Score=152.06 Aligned_cols=199 Identities=26% Similarity=0.335 Sum_probs=131.1
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCC-eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH-----H
Q 006535 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPR-GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-----Y 405 (641)
Q Consensus 332 ~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pk-gVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~-----~ 405 (641)
+.|+|++++++.+.+.+...+..- .....|. .+||+||||||||+||+++|..++.+++.++++++.+. .
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~----~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~l 529 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGL----GNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRL 529 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCC----CCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHH
Confidence 358999999998888776532110 0012344 47899999999999999999999999999999987652 2
Q ss_pred hhcc-----hHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC---------CCCc
Q 006535 406 VGMG-----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SNSA 471 (641)
Q Consensus 406 vG~~-----~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~---------~~~~ 471 (641)
.|.. ......+.+..+....+||+|||||.+.+ .+.+.|++.||... .-.+
T Consensus 530 ig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~---------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~ 594 (731)
T TIGR02639 530 IGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHP---------------DIYNILLQVMDYATLTDNNGRKADFRN 594 (731)
T ss_pred hcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCH---------------HHHHHHHHhhccCeeecCCCcccCCCC
Confidence 2221 11223344445556678999999998743 24466666666421 1235
Q ss_pred EEEEEecCCCC-------------------------CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc-------C
Q 006535 472 VIVLGATNRSD-------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK-------K 519 (641)
Q Consensus 472 ViVIaATN~pd-------------------------~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~-------~ 519 (641)
.++|+|||... .+.|.++. |||.+|.|.+.+.++..+|++..+.+ +
T Consensus 595 ~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~ 672 (731)
T TIGR02639 595 VILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEK 672 (731)
T ss_pred CEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 78888988631 24566665 99999999999999999999888753 1
Q ss_pred CC--CCCCCCCHHHHHHh--CCCCCHHHHHHHHHHHH
Q 006535 520 EL--PLAKDIDLGDIASM--TTGFTGADLANLVNEAA 552 (641)
Q Consensus 520 ~l--~l~~dvdl~~LA~~--T~GfSgaDL~~Lv~eAa 552 (641)
++ .++++ .++.|+.. ...+-.+.|+.+++.-.
T Consensus 673 ~~~l~i~~~-a~~~La~~~~~~~~GaR~l~r~i~~~~ 708 (731)
T TIGR02639 673 NIKLELTDD-AKKYLAEKGYDEEFGARPLARVIQEEI 708 (731)
T ss_pred CCeEEeCHH-HHHHHHHhCCCcccCchHHHHHHHHHh
Confidence 11 22222 24445543 33344566666666544
No 143
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=6e-12 Score=145.55 Aligned_cols=282 Identities=21% Similarity=0.231 Sum_probs=181.4
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc----------CCCeEE
Q 006535 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFIS 395 (641)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------g~pfi~ 395 (641)
...-.++-|+|.++..+++-+++.. +..++-+|.|+||+|||.++.-+|... +..+++
T Consensus 164 Ar~gklDPvIGRd~EI~r~iqIL~R------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s 231 (786)
T COG0542 164 AREGKLDPVIGRDEEIRRTIQILSR------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS 231 (786)
T ss_pred HhcCCCCCCcChHHHHHHHHHHHhc------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE
Confidence 3455688899999988777766642 334567899999999999999999864 566788
Q ss_pred eehhhHHH--HHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEE
Q 006535 396 CSASEFVE--LYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVI 473 (641)
Q Consensus 396 vs~se~~~--~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~Vi 473 (641)
.+...++. +|.|+-+.+++.+.+......+.||||||||.+.+...... +.-| .-|-|.-.+ ....+.
T Consensus 232 LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G--~a~D----AaNiLKPaL----ARGeL~ 301 (786)
T COG0542 232 LDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG--GAMD----AANLLKPAL----ARGELR 301 (786)
T ss_pred ecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc--cccc----hhhhhHHHH----hcCCeE
Confidence 88887775 78999999999999999988889999999999976543211 0111 112222222 245688
Q ss_pred EEEecCCCC-----CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc----CCCCCCCCCCHHHHHHh-----CCCC
Q 006535 474 VLGATNRSD-----VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK----KELPLAKDIDLGDIASM-----TTGF 539 (641)
Q Consensus 474 VIaATN~pd-----~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~----~~l~l~~dvdl~~LA~~-----T~Gf 539 (641)
+|+||...+ .-|+||-| ||. .|.+..|+.++-..||+-.-.+ .++.+.+++ +...+.. +.-|
T Consensus 302 ~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~A-l~aAv~LS~RYI~dR~ 377 (786)
T COG0542 302 CIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEA-LVAAVTLSDRYIPDRF 377 (786)
T ss_pred EEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHH-HHHHHHHHHhhcccCC
Confidence 999986432 44999999 997 7899999999999999876544 233444332 3333332 2334
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcchhhhhccCChhHHHH----------------------HHHH
Q 006535 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLKGSEKAV----------------------VARH 597 (641)
Q Consensus 540 SgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~rvi~g~~~~~~~l~~~ek~~----------------------va~h 597 (641)
-|.-...++++|+.............+.+++-+.......+.-...-.+.++.. +...
T Consensus 378 LPDKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 457 (786)
T COG0542 378 LPDKAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEAEVDED 457 (786)
T ss_pred CCchHHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhhccCHH
Confidence 556667889998876654322222222222222211100000000000011111 1223
Q ss_pred HhHHHHHHhHHhhcCCCCCceeeEeeeecccc-chhhhcccccc
Q 006535 598 EAGHAVVGTAVASLLPGQPRVEVKDWRDSKSQ-CMSCVCHKALI 640 (641)
Q Consensus 598 EaghAlv~~~l~~~~~~~~~v~kiti~~~~~~-~~~~~~~~~~~ 640 (641)
+++..+-.| +..||.|++-.+...+ -|+...|+++|
T Consensus 458 ~Ia~vv~~~-------TgIPv~~l~~~e~~kll~le~~L~~rVi 494 (786)
T COG0542 458 DIAEVVARW-------TGIPVAKLLEDEKEKLLNLERRLKKRVI 494 (786)
T ss_pred HHHHHHHHH-------HCCChhhhchhhHHHHHHHHHHHhccee
Confidence 355555554 6789999998887777 89999999886
No 144
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.40 E-value=2.4e-12 Score=148.83 Aligned_cols=215 Identities=23% Similarity=0.283 Sum_probs=139.7
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc--------------------
Q 006535 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------------------- 389 (641)
Q Consensus 330 tf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-------------------- 389 (641)
-|.+|+|+++++..|.-... +| ...+|||.||||||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~av---~~---------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAV---DP---------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhh---CC---------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 47899999999976653332 22 12469999999999999999999877
Q ss_pred ---------------CCCeEEeehhhHHHHHhhcc--hHHH--------HHHHHHHHhcCCceEEEcchhhhhhhcCCcc
Q 006535 390 ---------------EVPFISCSASEFVELYVGMG--ASRV--------RDLFARAKKEAPSIIFIDEIDAVAKSRDGRF 444 (641)
Q Consensus 390 ---------------g~pfi~vs~se~~~~~vG~~--~~~v--------r~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~ 444 (641)
..||+.+.++.......|.- ...+ ..++..| ...|||||||+.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~~~----- 141 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLDDH----- 141 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCCHH-----
Confidence 35777766554333333321 0000 1111112 1249999999998643
Q ss_pred cccchhHHHHHHHHHHhhhcCC-----------CCCCcEEEEEecCCC-CCCChhhhCCCCcceEEEecCCC-HHHHHHH
Q 006535 445 RIVSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRS-DVLDPALRRPGRFDRVVMVETPD-KIGREAI 511 (641)
Q Consensus 445 ~~~~~~e~~~~LnqLL~emd~~-----------~~~~~ViVIaATN~p-d~LD~ALlRpgRFd~~I~v~~Pd-~~eR~eI 511 (641)
+.+.|+..|+.- .....+++|+++|.. ..+.++|+. ||+.+|.++.|. .+++.++
T Consensus 142 ----------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~i 209 (633)
T TIGR02442 142 ----------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEI 209 (633)
T ss_pred ----------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHH
Confidence 335566655421 112468999999964 368899999 999999888764 5777777
Q ss_pred HHHHHhcC-----------------------------CCCCCCCCCHHHHHHhC--CCC-CHHHHHHHHHHHHHHHHhcC
Q 006535 512 LKVHVSKK-----------------------------ELPLAKDIDLGDIASMT--TGF-TGADLANLVNEAALLAGRLN 559 (641)
Q Consensus 512 Lk~~l~~~-----------------------------~l~l~~dvdl~~LA~~T--~Gf-SgaDL~~Lv~eAal~A~r~~ 559 (641)
++...... .+.+.++ .+..++..+ .|. +.+-...+++-|..+|..++
T Consensus 210 l~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~-~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~g 288 (633)
T TIGR02442 210 IRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDS-LIRFISELCIEFGVDGHRADIVMARAARALAALDG 288 (633)
T ss_pred HHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC
Confidence 76533210 1112211 123333222 244 45666778888889999999
Q ss_pred CccccHHHHHHHHHHHhc
Q 006535 560 KVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 560 ~~~It~~d~~eAl~rvi~ 577 (641)
+..|+.+|+.+|++-++.
T Consensus 289 r~~V~~~Dv~~A~~lvL~ 306 (633)
T TIGR02442 289 RRRVTAEDVREAAELVLP 306 (633)
T ss_pred CCcCCHHHHHHHHHHHhh
Confidence 999999999999988764
No 145
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.38 E-value=6e-12 Score=114.05 Aligned_cols=121 Identities=42% Similarity=0.631 Sum_probs=81.5
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHhhcchHH---HHHHHHHHHhcCCceEEEcchhhhh
Q 006535 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGASR---VRDLFARAKKEAPSIIFIDEIDAVA 437 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~~vG~~~~~---vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (641)
...+++++||||||||++++.+++.+ +.+++.+++.+............ ....+..+....+++|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 34679999999999999999999998 89999999887765433222111 1222333445567899999999873
Q ss_pred hhcCCcccccchhHHHHHHHHHHhhhcCCC----CCCcEEEEEecCCCC--CCChhhhCCCCcceEEEec
Q 006535 438 KSRDGRFRIVSNDEREQTLNQLLTEMDGFD----SNSAVIVLGATNRSD--VLDPALRRPGRFDRVVMVE 501 (641)
Q Consensus 438 ~~r~~~~~~~~~~e~~~~LnqLL~emd~~~----~~~~ViVIaATN~pd--~LD~ALlRpgRFd~~I~v~ 501 (641)
... ...++..+.... ...++.+|+++|... .+++.+.. ||+.++.++
T Consensus 98 ~~~---------------~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 RGA---------------QNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred HHH---------------HHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 211 122222222222 235788888988876 67788877 888776664
No 146
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.33 E-value=2e-11 Score=130.55 Aligned_cols=67 Identities=39% Similarity=0.573 Sum_probs=53.7
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC--CCeEEeehhhHHH
Q 006535 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVE 403 (641)
Q Consensus 330 tf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg--~pfi~vs~se~~~ 403 (641)
..+.++|+.++++..--+++..+.. .-..+++||.||||||||.||-++|+++| +||+.++++++.+
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~-------K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEG-------KIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred ccccccChHHHHHHHHHHHHHHhcc-------cccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 3568999999999999999888763 34568999999999999999999999996 9999999988755
No 147
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.32 E-value=5.8e-12 Score=142.37 Aligned_cols=211 Identities=20% Similarity=0.266 Sum_probs=131.7
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHH-
Q 006535 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL- 404 (641)
Q Consensus 329 vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~- 404 (641)
.+|++++|.+++.+.+.+.+..+.. ...+|||+|++||||+++|+++.... +.||+.++|..+-+.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~----------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYAR----------SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 6799999999999888887765432 23579999999999999999998754 679999999766332
Q ss_pred ----Hhhcc------h--HHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC-----C
Q 006535 405 ----YVGMG------A--SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----D 467 (641)
Q Consensus 405 ----~vG~~------~--~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~-----~ 467 (641)
..|.. + ..-..+|+.|.. ..||||||+.|....+ ..|+..++.- .
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~~~Q---------------~~Ll~~L~~~~~~r~g 340 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMPLPLQ---------------TRLLRVLEEREVVRVG 340 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCCHHHH---------------HHHHHHHhcCcEEecC
Confidence 11210 0 011234555543 3899999999865433 3333333321 1
Q ss_pred C----CCcEEEEEecCCCC-------CCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHhc----CCCCCCCCCC
Q 006535 468 S----NSAVIVLGATNRSD-------VLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KELPLAKDID 528 (641)
Q Consensus 468 ~----~~~ViVIaATN~pd-------~LD~ALlRpgRFd~~I~v~~Pd~~eR~e----ILk~~l~~----~~l~l~~dvd 528 (641)
. ..++.+|++||..- .+.+.|.. |+. .+.+..|+..+|.+ ++..++.+ .++++.++.
T Consensus 341 ~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a- 416 (526)
T TIGR02329 341 GTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAA- 416 (526)
T ss_pred CCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHH-
Confidence 1 22468999998751 12222222 332 46777888888764 33344432 233333332
Q ss_pred HHH-------HHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 006535 529 LGD-------IASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (641)
Q Consensus 529 l~~-------LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eA 571 (641)
+.. |..+..--+.++|++++++++..+.......|+.+++...
T Consensus 417 ~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~~ 466 (526)
T TIGR02329 417 AQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRAL 466 (526)
T ss_pred HHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhhh
Confidence 233 5555555577999999999988764333457888886543
No 148
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.32 E-value=4e-11 Score=134.81 Aligned_cols=212 Identities=22% Similarity=0.294 Sum_probs=133.2
Q ss_pred ccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc------------------
Q 006535 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA------------------ 389 (641)
Q Consensus 328 ~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el------------------ 389 (641)
...|+||.|++.+++.+.-.+ .....++|.||||||||++|+++++.+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 348999999999877655443 233579999999999999999998632
Q ss_pred ----------CCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHH
Q 006535 390 ----------EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL 459 (641)
Q Consensus 390 ----------g~pfi~vs~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqL 459 (641)
..||...+++.......|.+...-...+..|.. .+|||||++.+... .+..|
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~~~~---------------~~~~L 315 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEFKRS---------------VLDAL 315 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhCCHH---------------HHHHH
Confidence 234544444333333333332212233444433 49999999987532 23444
Q ss_pred HhhhcCCC-----------CCCcEEEEEecCCC------C-----------------CCChhhhCCCCcceEEEecCCCH
Q 006535 460 LTEMDGFD-----------SNSAVIVLGATNRS------D-----------------VLDPALRRPGRFDRVVMVETPDK 505 (641)
Q Consensus 460 L~emd~~~-----------~~~~ViVIaATN~p------d-----------------~LD~ALlRpgRFd~~I~v~~Pd~ 505 (641)
+..|+... ...++.+|+++|.- + .+...|+. |||.++.++.++.
T Consensus 316 ~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~ 393 (499)
T TIGR00368 316 REPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPP 393 (499)
T ss_pred HHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCH
Confidence 44443221 13478999999862 1 47888888 9999999987654
Q ss_pred HH-------------HHHHHHHHHhc----CCC---CCCCCCC-------------HH---HHHHhCCCCCHHHHHHHHH
Q 006535 506 IG-------------REAILKVHVSK----KEL---PLAKDID-------------LG---DIASMTTGFTGADLANLVN 549 (641)
Q Consensus 506 ~e-------------R~eILk~~l~~----~~l---~l~~dvd-------------l~---~LA~~T~GfSgaDL~~Lv~ 549 (641)
.+ |..+.+.+-.+ .+. .+...+. .. .-+....++|.+-...+++
T Consensus 394 ~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilr 473 (499)
T TIGR00368 394 EKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILK 473 (499)
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 32 22232221111 010 1111111 11 1122334689999999999
Q ss_pred HHHHHHHhcCCccccHHHHHHHHH
Q 006535 550 EAALLAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 550 eAal~A~r~~~~~It~~d~~eAl~ 573 (641)
-|..+|..++...|+.+|+.+|+.
T Consensus 474 vArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 474 VARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHHHHhhcCCCCCCHHHHHHHHh
Confidence 999999999999999999999974
No 149
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.32 E-value=6.2e-12 Score=142.27 Aligned_cols=210 Identities=22% Similarity=0.296 Sum_probs=131.3
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHh-----------cCCCeEEee
Q 006535 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE-----------AEVPFISCS 397 (641)
Q Consensus 329 vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~e-----------lg~pfi~vs 397 (641)
.+|+|++|.+.+.+.+.+.+..+.. ...+|||+|++||||+++|+++... .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~----------s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYAR----------SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 4699999999999988888765332 2457999999999999999999887 467999999
Q ss_pred hhhHHHH-----Hhhcc------h--HHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhc
Q 006535 398 ASEFVEL-----YVGMG------A--SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (641)
Q Consensus 398 ~se~~~~-----~vG~~------~--~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd 464 (641)
|..+.+. ..|.. + ..-..+|+.|.. ..||||||+.|....+ ..|+..++
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~~~Q---------------~kLl~~L~ 347 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMPLPLQ---------------TRLLRVLE 347 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCCHHHH---------------HHHHhhhh
Confidence 9865332 11210 0 011235555543 3899999999865433 33444443
Q ss_pred CC-----C----CCCcEEEEEecCCCCCCChhhhCCCCcce-------EEEecCCCHHHHHH----HHHHHHhc----CC
Q 006535 465 GF-----D----SNSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSK----KE 520 (641)
Q Consensus 465 ~~-----~----~~~~ViVIaATN~pd~LD~ALlRpgRFd~-------~I~v~~Pd~~eR~e----ILk~~l~~----~~ 520 (641)
.- . ...++.+|++||.. |. .+...|+|.. .+.+..|+..+|.+ ++..++.+ .+
T Consensus 348 e~~~~r~G~~~~~~~dvRiIaat~~~--L~-~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~ 424 (538)
T PRK15424 348 EKEVTRVGGHQPVPVDVRVISATHCD--LE-EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALS 424 (538)
T ss_pred cCeEEecCCCceeccceEEEEecCCC--HH-HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcC
Confidence 21 1 12357899999875 22 2223334431 46778888888764 34444433 33
Q ss_pred CCCCCCCC------HHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHH
Q 006535 521 LPLAKDID------LGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (641)
Q Consensus 521 l~l~~dvd------l~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 569 (641)
.++.+++- +..|..+..--+.++|++++++++..+.......|+.+++.
T Consensus 425 ~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 425 APFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred CCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 44433321 13344444444779999999999887543333456666653
No 150
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.32 E-value=4.3e-11 Score=123.62 Aligned_cols=101 Identities=22% Similarity=0.221 Sum_probs=80.2
Q ss_pred cEEEEEecCC-------------CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCC
Q 006535 471 AVIVLGATNR-------------SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTT 537 (641)
Q Consensus 471 ~ViVIaATN~-------------pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~ 537 (641)
.-+||.|||+ |.-+++.|+. |+ ..|..-+++.++.++|++..++..++.++++ .+..++....
T Consensus 325 aPivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~-a~~~l~~~gt 400 (456)
T KOG1942|consen 325 APIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEE-ALDLLAEIGT 400 (456)
T ss_pred CceEEEecCCcceeecCCcCCCCCCCCCHHHhh--he-eEEeeccCCHHHHHHHHHHHHhhhcceecHH-HHHHHHhhcc
Confidence 3467778876 5667788877 65 3566667888999999999998888888766 4777888776
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHH
Q 006535 538 GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (641)
Q Consensus 538 GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~rv 575 (641)
.-|-+...+++.-|.++|...++..|..+|+++.-+-.
T Consensus 401 ~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf 438 (456)
T KOG1942|consen 401 STSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELF 438 (456)
T ss_pred chhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHH
Confidence 67788888999989999999999999999999876543
No 151
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.30 E-value=1.4e-11 Score=131.06 Aligned_cols=137 Identities=19% Similarity=0.243 Sum_probs=98.7
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH--HhhcchHH----------HHHHHHHHHhcCCceEEEcc
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL--YVGMGASR----------VRDLFARAKKEAPSIIFIDE 432 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~--~vG~~~~~----------vr~lF~~A~~~aP~ILfIDE 432 (641)
.++|||.||||||||++|+.+|.+++.|++.+++...... ..|...-. ....+..|.. .++++++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 3579999999999999999999999999999988766554 34432111 1123444443 467899999
Q ss_pred hhhhhhhcCCcccccchhHHHHHHHHHHhh-----h----cCCCCCCcEEEEEecCCCC------------CCChhhhCC
Q 006535 433 IDAVAKSRDGRFRIVSNDEREQTLNQLLTE-----M----DGFDSNSAVIVLGATNRSD------------VLDPALRRP 491 (641)
Q Consensus 433 IDaL~~~r~~~~~~~~~~e~~~~LnqLL~e-----m----d~~~~~~~ViVIaATN~pd------------~LD~ALlRp 491 (641)
||...++. ...++.+|.. + +.+.....+.||||.|..+ .|++|++.
T Consensus 143 in~a~p~~------------~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 143 YDAGRPDV------------MFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhccCHHH------------HHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 99874332 2344555542 1 1123445799999999854 56899999
Q ss_pred CCcceEEEecCCCHHHHHHHHHHHH
Q 006535 492 GRFDRVVMVETPDKIGREAILKVHV 516 (641)
Q Consensus 492 gRFd~~I~v~~Pd~~eR~eILk~~l 516 (641)
||-..+.+++|+.++-.+|+....
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhc
Confidence 998788999999999999998765
No 152
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.30 E-value=1.2e-11 Score=137.03 Aligned_cols=215 Identities=26% Similarity=0.380 Sum_probs=140.2
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH
Q 006535 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (641)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~ 403 (641)
...+|+||+|..++..++.+.+... ++.+..|||.|.+||||.++|+++.+.. +-||+.+||..+-+
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr~----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKRI----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHhh----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 4578999999999988887777543 4456689999999999999999999865 68999999975543
Q ss_pred H-----Hhhc------chHH--HHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcC-----
Q 006535 404 L-----YVGM------GASR--VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG----- 465 (641)
Q Consensus 404 ~-----~vG~------~~~~--vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~----- 465 (641)
. ..|. |+.+ -..+|+.|... .||+|||..+...-| ..||..++.
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgempl~LQ---------------aKLLRVLQEkei~r 371 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMPLPLQ---------------AKLLRVLQEKEIER 371 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCCHHHH---------------HHHHHHHhhceEEe
Confidence 2 1111 1121 34566666555 899999988864433 334444332
Q ss_pred CC----CCCcEEEEEecCCCCCCChhhhCCCCcce-------EEEecCCCHHHHHH----HHHHHHh----cCC--CC-C
Q 006535 466 FD----SNSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVS----KKE--LP-L 523 (641)
Q Consensus 466 ~~----~~~~ViVIaATN~pd~LD~ALlRpgRFd~-------~I~v~~Pd~~eR~e----ILk~~l~----~~~--l~-l 523 (641)
.. ....|.||||||+. |-. +...|+|-. ++.+..|+..+|.+ +...++. +.+ ++ +
T Consensus 372 vG~t~~~~vDVRIIAATN~n--L~~-~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~l 448 (560)
T COG3829 372 VGGTKPIPVDVRIIAATNRN--LEK-MIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGL 448 (560)
T ss_pred cCCCCceeeEEEEEeccCcC--HHH-HHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccC
Confidence 11 23469999999985 222 223355422 56777888888864 2222332 222 22 3
Q ss_pred CCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHH-HHHHHH
Q 006535 524 AKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI-HAVERS 575 (641)
Q Consensus 524 ~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~-eAl~rv 575 (641)
.+++ +..|.++.+--+.++|+|++.+|...+. +...|+.+|+. .+++..
T Consensus 449 s~~a-~~~L~~y~WPGNVRELeNviER~v~~~~--~~~~I~~~~lp~~~l~~k 498 (560)
T COG3829 449 SPDA-LALLLRYDWPGNVRELENVIERAVNLVE--SDGLIDADDLPAFALEEK 498 (560)
T ss_pred CHHH-HHHHHhCCCCchHHHHHHHHHHHHhccC--Ccceeehhhcchhhhccc
Confidence 3332 5555565554577999999999998553 44458888877 555443
No 153
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.30 E-value=5.2e-11 Score=127.20 Aligned_cols=132 Identities=30% Similarity=0.382 Sum_probs=88.8
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHH------HHHHH--hcCC--ceEEEcchhh
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDL------FARAK--KEAP--SIIFIDEIDA 435 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~vG~~~~~vr~l------F~~A~--~~aP--~ILfIDEIDa 435 (641)
+++||.||||||||+||+++|..++.+|+.+.|..........+...+... |.... -... +|+++|||+.
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 469999999999999999999999999999998755432221121111111 00000 0011 3999999987
Q ss_pred hhhhcCCcccccchhHHHHHHHHHHhhhcC----------CCCCCcEEEEEecC-----CCCCCChhhhCCCCcceEEEe
Q 006535 436 VAKSRDGRFRIVSNDEREQTLNQLLTEMDG----------FDSNSAVIVLGATN-----RSDVLDPALRRPGRFDRVVMV 500 (641)
Q Consensus 436 L~~~r~~~~~~~~~~e~~~~LnqLL~emd~----------~~~~~~ViVIaATN-----~pd~LD~ALlRpgRFd~~I~v 500 (641)
..+ .+.+.|+..|+. +.-..+++||+|+| ....|++|+++ ||...+.+
T Consensus 124 a~p---------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v 186 (329)
T COG0714 124 APP---------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYV 186 (329)
T ss_pred CCH---------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEec
Confidence 643 234556666654 33456789999999 44678999999 99889999
Q ss_pred cCCCHHHHHHHHHH
Q 006535 501 ETPDKIGREAILKV 514 (641)
Q Consensus 501 ~~Pd~~eR~eILk~ 514 (641)
++|+.++-..++..
T Consensus 187 ~yp~~~~e~~~i~~ 200 (329)
T COG0714 187 DYPDSEEEERIILA 200 (329)
T ss_pred CCCCchHHHHHHHH
Confidence 99954444444333
No 154
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.29 E-value=6.5e-11 Score=140.80 Aligned_cols=196 Identities=26% Similarity=0.337 Sum_probs=127.3
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCe-eEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHH---
Q 006535 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRG-VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL--- 404 (641)
Q Consensus 332 ~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkg-VLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~--- 404 (641)
..|+|++++.+.+.+.+...+..-. ....|.+ +||+||||+|||.+|+++|..+ ...++.++++++.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLE----DPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCC----CCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 3689999999988877755321100 0134555 7999999999999999999988 458899999988653
Q ss_pred ---------HhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC--------
Q 006535 405 ---------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-------- 467 (641)
Q Consensus 405 ---------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~-------- 467 (641)
|+|..+. ..+....+...++||+|||||.+.+ .+.+.|++.+|.-.
T Consensus 642 ~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~~---------------~v~~~Llq~ld~g~l~d~~Gr~ 704 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAHP---------------DVLELFYQVFDKGVMEDGEGRE 704 (852)
T ss_pred ccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcCH---------------HHHHHHHHHhhcceeecCCCcE
Confidence 3333221 1233444567779999999986532 24455666665321
Q ss_pred -CCCcEEEEEecCCCC-----------------------------CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHh
Q 006535 468 -SNSAVIVLGATNRSD-----------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVS 517 (641)
Q Consensus 468 -~~~~ViVIaATN~pd-----------------------------~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~ 517 (641)
.-.+.++|.|||... .+.|+++. |++ .|.|.+.+.++..+|+...+.
T Consensus 705 vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 705 IDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred EeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 013578888988521 14466666 887 889999999999999887764
Q ss_pred cC--------CCC--CCCCCCHHHHHHhCCC--CCHHHHHHHHHHHH
Q 006535 518 KK--------ELP--LAKDIDLGDIASMTTG--FTGADLANLVNEAA 552 (641)
Q Consensus 518 ~~--------~l~--l~~dvdl~~LA~~T~G--fSgaDL~~Lv~eAa 552 (641)
+. ++. ++++ .++.|+....+ +-.+.|.++++.-.
T Consensus 782 ~l~~rl~~~~gi~l~i~d~-a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 782 RIARRLKENHGAELVYSEA-LVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred HHHHHHHHhcCceEEECHH-HHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 31 222 2222 24556655432 34577777766543
No 155
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.29 E-value=1.7e-10 Score=120.99 Aligned_cols=219 Identities=19% Similarity=0.244 Sum_probs=141.0
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---------CCCeEEeehh---
Q 006535 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSAS--- 399 (641)
Q Consensus 332 ~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---------g~pfi~vs~s--- 399 (641)
+.-+|++.+++.|..+.+.+..|.+ ..+.++||+|++|.|||++++.++... .+|++.+...
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p 107 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEP 107 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCC
Confidence 3468999999999999998888854 445579999999999999999999754 3577777542
Q ss_pred ---hHHHHH---hh------c-chHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC
Q 006535 400 ---EFVELY---VG------M-GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 466 (641)
Q Consensus 400 ---e~~~~~---vG------~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~ 466 (641)
.|.... .| . ..+.-..+....+...+-+|+|||++.+.. +.....+.++|.|-...+.+
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa--------Gs~~~qr~~Ln~LK~L~NeL 179 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA--------GSYRKQREFLNALKFLGNEL 179 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc--------ccHHHHHHHHHHHHHHhhcc
Confidence 221110 00 1 112222334455666777999999999853 23444566666554443322
Q ss_pred CCCCcEEEEEecCCCC--CCChhhhCCCCcceEEEecCCC-HHHHHHHHHHHHhcCCCCCCCCCCH----HHHHHhCCCC
Q 006535 467 DSNSAVIVLGATNRSD--VLDPALRRPGRFDRVVMVETPD-KIGREAILKVHVSKKELPLAKDIDL----GDIASMTTGF 539 (641)
Q Consensus 467 ~~~~~ViVIaATN~pd--~LD~ALlRpgRFd~~I~v~~Pd-~~eR~eILk~~l~~~~l~l~~dvdl----~~LA~~T~Gf 539 (641)
.-.++.+++..-.. .-|+.+-+ ||+ .+.++... .++.+.++..+-....+.-..+..- ..|-..+.|
T Consensus 180 --~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G- 253 (302)
T PF05621_consen 180 --QIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEG- 253 (302)
T ss_pred --CCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCC-
Confidence 23455555443222 23788877 997 45555432 3455566666554322222222222 345567777
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccccHHHHHH
Q 006535 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (641)
Q Consensus 540 SgaDL~~Lv~eAal~A~r~~~~~It~~d~~e 570 (641)
+.+++.++++.|+..|++.+++.||.+.++.
T Consensus 254 ~iG~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 254 LIGELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred chHHHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 5588999999999999999999999988765
No 156
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.28 E-value=6.6e-11 Score=136.12 Aligned_cols=105 Identities=24% Similarity=0.359 Sum_probs=69.1
Q ss_pred CcEEEEEecCCC--CCCChhhhCCCCcc---eEEEec--CCC-HHHHHHHHHHH---HhcCC-CC-CCCCCCHHHHHH--
Q 006535 470 SAVIVLGATNRS--DVLDPALRRPGRFD---RVVMVE--TPD-KIGREAILKVH---VSKKE-LP-LAKDIDLGDIAS-- 534 (641)
Q Consensus 470 ~~ViVIaATN~p--d~LD~ALlRpgRFd---~~I~v~--~Pd-~~eR~eILk~~---l~~~~-l~-l~~dvdl~~LA~-- 534 (641)
..+.||+++|.. ..+++.|+. ||+ ..+.++ .|+ .+.|.++.+.. +++.+ .+ ++++ .+..+.+
T Consensus 267 ~dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~-Av~~Li~~~ 343 (608)
T TIGR00764 267 CDFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRD-AVEEIVREA 343 (608)
T ss_pred cceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHH-HHHHHHHHH
Confidence 368899999975 578999999 998 556554 344 45555544432 33221 22 2222 1333321
Q ss_pred -hCC------CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhc
Q 006535 535 -MTT------GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 535 -~T~------GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~rvi~ 577 (641)
+.. ..+.++|.+++++|...|..+++..|+.+|+.+|++....
T Consensus 344 ~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~~ 393 (608)
T TIGR00764 344 QRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAKT 393 (608)
T ss_pred HHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHHH
Confidence 111 1357999999999988888888899999999999886543
No 157
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.27 E-value=5e-11 Score=134.69 Aligned_cols=222 Identities=20% Similarity=0.177 Sum_probs=131.4
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCC-CeEEe---ehhhHHHHHhh-
Q 006535 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-PFISC---SASEFVELYVG- 407 (641)
Q Consensus 333 DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~-pfi~v---s~se~~~~~vG- 407 (641)
+|.|++.+|..+.-.+---..+..-.....+...+|||+|+||||||++|++++..+.. +|... ++..+......
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~ 283 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRD 283 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEc
Confidence 58899998776543332111110000011233347999999999999999999997643 23321 22112110000
Q ss_pred --cchHHH-HHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC-----------CCCcEE
Q 006535 408 --MGASRV-RDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSAVI 473 (641)
Q Consensus 408 --~~~~~v-r~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~-----------~~~~Vi 473 (641)
.++..+ ...+..| ...+++|||+|.+.... ...|+..|+.-. -+..+.
T Consensus 284 ~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~~~~---------------q~~L~e~me~~~i~i~k~G~~~~l~~~~~ 345 (509)
T smart00350 284 PETREFTLEGGALVLA---DNGVCCIDEFDKMDDSD---------------RTAIHEAMEQQTISIAKAGITTTLNARCS 345 (509)
T ss_pred cCcceEEecCccEEec---CCCEEEEechhhCCHHH---------------HHHHHHHHhcCEEEEEeCCEEEEecCCcE
Confidence 000000 0011122 23499999999985432 233444443211 134689
Q ss_pred EEEecCCCC-------------CCChhhhCCCCcceEEEe-cCCCHHHHHHHHHHHHhcCC---------C---------
Q 006535 474 VLGATNRSD-------------VLDPALRRPGRFDRVVMV-ETPDKIGREAILKVHVSKKE---------L--------- 521 (641)
Q Consensus 474 VIaATN~pd-------------~LD~ALlRpgRFd~~I~v-~~Pd~~eR~eILk~~l~~~~---------l--------- 521 (641)
||||+|+.+ .|++++++ |||..+.+ +.|+.+...+|.+..+.... .
T Consensus 346 viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l 423 (509)
T smart00350 346 VLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFL 423 (509)
T ss_pred EEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHH
Confidence 999999752 68999999 99986655 78999888888877543210 0
Q ss_pred -------------CCCCCCCHHHHH-----Hh----------CCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 006535 522 -------------PLAKDIDLGDIA-----SM----------TTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 522 -------------~l~~dvdl~~LA-----~~----------T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~ 573 (641)
.+.+++ .+.|. .+ ..+.|++.+..+++-|...|..+.+..|+.+|+.+|++
T Consensus 424 ~~yi~~ar~~~~P~ls~~~-~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~ 502 (509)
T smart00350 424 RKYIAYAREKIKPKLSEEA-AEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIR 502 (509)
T ss_pred HHHHHHHHhcCCCCCCHHH-HHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 011100 11111 01 23568899999999999999999999999999999986
Q ss_pred HH
Q 006535 574 RS 575 (641)
Q Consensus 574 rv 575 (641)
=+
T Consensus 503 l~ 504 (509)
T smart00350 503 LL 504 (509)
T ss_pred HH
Confidence 43
No 158
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.27 E-value=9.5e-12 Score=141.16 Aligned_cols=210 Identities=22% Similarity=0.290 Sum_probs=131.1
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHH
Q 006535 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (641)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~ 402 (641)
.+..+|++++|.+.+.+++.+.+..+.. ....|||+|++|||||++|+++.... +.||+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVAR----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 4557899999999998888877765432 34469999999999999999999874 5799999997663
Q ss_pred HHH-----hhcch-------HHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC---
Q 006535 403 ELY-----VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--- 467 (641)
Q Consensus 403 ~~~-----vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~--- 467 (641)
+.. .|... ......|..+ ...+|||||||.|....+ ..|+..++.-.
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~~~Q---------------~~Ll~~l~~~~~~~ 321 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISPAFQ---------------AKLLRVLQEGEFER 321 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCHHHH---------------HHHHHHHhcCcEEE
Confidence 321 11100 0001123333 245999999999865432 33444443211
Q ss_pred --C----CCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHH----HHHHHHHhc----CC--CCCC
Q 006535 468 --S----NSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGRE----AILKVHVSK----KE--LPLA 524 (641)
Q Consensus 468 --~----~~~ViVIaATN~p-------d~LD~ALlRpgRFd~~I~v~~Pd~~eR~----eILk~~l~~----~~--l~l~ 524 (641)
. ...+.+|++|+.. ..+.+.|.. |+. .+.+..|+..+|. .++..++.+ .+ ..++
T Consensus 322 ~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s 398 (534)
T TIGR01817 322 VGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTIT 398 (534)
T ss_pred CCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--Hhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCC
Confidence 1 1257899998764 122233332 332 4556667666663 344444432 12 2333
Q ss_pred CCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHH
Q 006535 525 KDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (641)
Q Consensus 525 ~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~e 570 (641)
++ .+..|..+...-+.++|+++++.|+..+ ....|+.+|+..
T Consensus 399 ~~-a~~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~~ 440 (534)
T TIGR01817 399 PS-AIRVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFSC 440 (534)
T ss_pred HH-HHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCch
Confidence 33 2566666665557799999999998765 346788888753
No 159
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.27 E-value=1.7e-10 Score=128.20 Aligned_cols=213 Identities=17% Similarity=0.145 Sum_probs=126.2
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCC--CeEEeehhh-HHHHHhhcc
Q 006535 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASE-FVELYVGMG 409 (641)
Q Consensus 333 DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~--pfi~vs~se-~~~~~vG~~ 409 (641)
.|+|.+++.+.+...+. ...+|||+||||||||++|++++..++. +|....+.- ..+...|..
T Consensus 21 ~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 47888887776655442 2346999999999999999999997642 555444431 111222210
Q ss_pred -hHHH--HHHHHHHHhc---CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC--------CCCcEEEE
Q 006535 410 -ASRV--RDLFARAKKE---APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD--------SNSAVIVL 475 (641)
Q Consensus 410 -~~~v--r~lF~~A~~~---aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~--------~~~~ViVI 475 (641)
.... ..-|.....+ ...+||+|||..+.+ .+.+.||..|+.-. .-+..+++
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp---------------~~QsaLLeam~Er~~t~g~~~~~lp~rfiv 151 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGP---------------AILNTLLTAINERRFRNGAHEEKIPMRLLV 151 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccCCH---------------HHHHHHHHHHHhCeEecCCeEEeCCCcEEE
Confidence 0110 1122222111 233999999986643 34466777773211 01123444
Q ss_pred EecCCCC---CCChhhhCCCCcceEEEecCCC-HHHHHHHHHHHHhc--CCCC---------------------CCCCC-
Q 006535 476 GATNRSD---VLDPALRRPGRFDRVVMVETPD-KIGREAILKVHVSK--KELP---------------------LAKDI- 527 (641)
Q Consensus 476 aATN~pd---~LD~ALlRpgRFd~~I~v~~Pd-~~eR~eILk~~l~~--~~l~---------------------l~~dv- 527 (641)
+|||... ...++++. ||-..+.+++|+ .++..++|...... ...+ +++.+
T Consensus 152 ~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~ 229 (498)
T PRK13531 152 TASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVF 229 (498)
T ss_pred EECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHH
Confidence 5557432 23358888 998789999997 45557787654321 1011 11110
Q ss_pred -CHHHHHHh---C---CCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhc
Q 006535 528 -DLGDIASM---T---TGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 528 -dl~~LA~~---T---~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~rvi~ 577 (641)
.+..|... + ...|++-...+++-|...|...++..|+.+|+. .+..++.
T Consensus 230 eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~ 285 (498)
T PRK13531 230 ELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLW 285 (498)
T ss_pred HHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhc
Confidence 01122221 2 237889999999999999999999999999999 6665554
No 160
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.27 E-value=9.6e-11 Score=139.76 Aligned_cols=202 Identities=21% Similarity=0.306 Sum_probs=129.6
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHH----
Q 006535 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL---- 404 (641)
Q Consensus 332 ~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~---- 404 (641)
..|+|++++.+.+.+.+......-. -..++...+||+||||||||++|+++|..+ +.+++.++++++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~---~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLS---DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCC---CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 4699999999999888765321000 001234568999999999999999999976 578999999887542
Q ss_pred -Hhhcc-----hHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC---------CC
Q 006535 405 -YVGMG-----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SN 469 (641)
Q Consensus 405 -~vG~~-----~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~---------~~ 469 (641)
..|.. ...-..+....+....+||+|||||.+.+ .+.+.|+..|+.-. .-
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~---------------~v~~~Ll~~l~~g~l~d~~g~~vd~ 706 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP---------------DVFNVLLQVLDDGRLTDGQGRTVDF 706 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH---------------HHHHHHHHHHhcCceecCCCeEEec
Confidence 11211 01112233444455557999999997643 23455666654321 11
Q ss_pred CcEEEEEecCCCC-------------------------CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc------
Q 006535 470 SAVIVLGATNRSD-------------------------VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK------ 518 (641)
Q Consensus 470 ~~ViVIaATN~pd-------------------------~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~------ 518 (641)
.+.+||+|||... .+.|.|+. |+|..+.+.+++.++..+|+...+..
T Consensus 707 rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~ 784 (852)
T TIGR03346 707 RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLA 784 (852)
T ss_pred CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999731 13355665 99999999999999999998876642
Q ss_pred -CCC--CCCCCCCHHHHHHhCC--CCCHHHHHHHHHHHHHH
Q 006535 519 -KEL--PLAKDIDLGDIASMTT--GFTGADLANLVNEAALL 554 (641)
Q Consensus 519 -~~l--~l~~dvdl~~LA~~T~--GfSgaDL~~Lv~eAal~ 554 (641)
.++ .++++ .++.|++... .+..+.|++++++....
T Consensus 785 ~~~~~l~i~~~-a~~~L~~~~~~~~~gaR~L~~~i~~~i~~ 824 (852)
T TIGR03346 785 ERKITLELSDA-ALDFLAEAGYDPVYGARPLKRAIQREIEN 824 (852)
T ss_pred HCCCeecCCHH-HHHHHHHhCCCCCCCchhHHHHHHHHHHH
Confidence 222 22222 2455665432 45667888877776543
No 161
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=9.2e-11 Score=126.70 Aligned_cols=189 Identities=16% Similarity=0.180 Sum_probs=125.1
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCC-------CeEEe---
Q 006535 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISC--- 396 (641)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~-------pfi~v--- 396 (641)
.+..+++|+|++++++.|...+.. .+.|..+||+||+|+|||++|+.+|+.+.+ |....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 466899999999999988888752 356678999999999999999999998754 21111
Q ss_pred -ehhhHHHH--------H-h-------------hcchHHHHHHHHHHH----hcCCceEEEcchhhhhhhcCCcccccch
Q 006535 397 -SASEFVEL--------Y-V-------------GMGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSN 449 (641)
Q Consensus 397 -s~se~~~~--------~-v-------------G~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~ 449 (641)
.|...... + . .-+...+|++-+... .....|++|||+|.+..
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~----------- 155 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR----------- 155 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH-----------
Confidence 11111000 0 0 011244555444332 23345999999999853
Q ss_pred hHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCH
Q 006535 450 DEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDL 529 (641)
Q Consensus 450 ~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl 529 (641)
...|.||..++... .+.++|..|+.++.+.+.+++ |. ..+.+++|+.++..++|+...... .++++ .+
T Consensus 156 ----~aanaLLk~LEEpp--~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~--~~~~~-~~ 223 (351)
T PRK09112 156 ----NAANAILKTLEEPP--ARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQ--GSDGE-IT 223 (351)
T ss_pred ----HHHHHHHHHHhcCC--CCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhccc--CCCHH-HH
Confidence 23477888888643 344555556778888899987 66 489999999999999998753221 12222 25
Q ss_pred HHHHHhCCCCCHHHHHHHHHH
Q 006535 530 GDIASMTTGFTGADLANLVNE 550 (641)
Q Consensus 530 ~~LA~~T~GfSgaDL~~Lv~e 550 (641)
..+++.+.| +++...++++.
T Consensus 224 ~~i~~~s~G-~pr~Al~ll~~ 243 (351)
T PRK09112 224 EALLQRSKG-SVRKALLLLNY 243 (351)
T ss_pred HHHHHHcCC-CHHHHHHHHhc
Confidence 667777766 66666666644
No 162
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.26 E-value=2.3e-10 Score=115.81 Aligned_cols=195 Identities=22% Similarity=0.334 Sum_probs=136.3
Q ss_pred CCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhH
Q 006535 325 QGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEF 401 (641)
Q Consensus 325 ~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~ 401 (641)
..+.+.+.+|+|.+.+|+.|-+-...+.. ..+.++|||+|..||||++|+||+.++. +..++.|+-+++
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence 44678999999999999988776655432 3566789999999999999999999876 677899998877
Q ss_pred HHHHhhcchHHHHHHHHHHHhc-CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC--CCCCcEEEEEec
Q 006535 402 VELYVGMGASRVRDLFARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--DSNSAVIVLGAT 478 (641)
Q Consensus 402 ~~~~vG~~~~~vr~lF~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~--~~~~~ViVIaAT 478 (641)
.. +-.+++..+.. ...|||+|++-- . .+ +.....|-..|||- ....+|+|.||+
T Consensus 125 ~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF---e--------~g---d~~yK~LKs~LeG~ve~rP~NVl~YATS 181 (287)
T COG2607 125 AT---------LPDLVELLRARPEKFILFCDDLSF---E--------EG---DDAYKALKSALEGGVEGRPANVLFYATS 181 (287)
T ss_pred hh---------HHHHHHHHhcCCceEEEEecCCCC---C--------CC---chHHHHHHHHhcCCcccCCCeEEEEEec
Confidence 54 34555555532 345999999621 0 11 12223444555653 234589999999
Q ss_pred CCCCCCChhh--------------------hCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCC-CCHHHH--HHh
Q 006535 479 NRSDVLDPAL--------------------RRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKD-IDLGDI--ASM 535 (641)
Q Consensus 479 N~pd~LD~AL--------------------lRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~d-vdl~~L--A~~ 535 (641)
|+-..|+... --+.||...+.|.+++.++-..|+..++++.+++++++ .+.+.+ |..
T Consensus 182 NRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~ 261 (287)
T COG2607 182 NRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATT 261 (287)
T ss_pred CCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 9865554222 11349999999999999999999999998887776532 222222 344
Q ss_pred CCCCCHHHHHHHHHH
Q 006535 536 TTGFTGADLANLVNE 550 (641)
Q Consensus 536 T~GfSgaDL~~Lv~e 550 (641)
-.|-||+-..+.++.
T Consensus 262 rg~RSGR~A~QF~~~ 276 (287)
T COG2607 262 RGGRSGRVAWQFIRD 276 (287)
T ss_pred cCCCccHhHHHHHHH
Confidence 456677766666554
No 163
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.25 E-value=1.8e-10 Score=137.40 Aligned_cols=166 Identities=24% Similarity=0.352 Sum_probs=110.5
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhhCCCCC-CeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHH-
Q 006535 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPP-RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY- 405 (641)
Q Consensus 331 f~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~p-kgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~~- 405 (641)
.+.|+|++++.+.+.+.+...+..-. ....| ..+||+||||||||++|+++|..+ +.+|+.++++++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLS----DPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhccc----CCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 34689999999998888865431100 01123 358999999999999999999876 5689999999886531
Q ss_pred ----hhcc-----hHHHHHHHHHH-HhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC--C------
Q 006535 406 ----VGMG-----ASRVRDLFARA-KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--D------ 467 (641)
Q Consensus 406 ----vG~~-----~~~vr~lF~~A-~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~--~------ 467 (641)
.|.. ... ...+..+ +....+||+|||++.+.+ .+.+.|+..++.. .
T Consensus 643 ~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~---------------~v~~~Ll~ile~g~l~d~~gr~ 706 (857)
T PRK10865 643 VSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHP---------------DVFNILLQVLDDGRLTDGQGRT 706 (857)
T ss_pred HHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCH---------------HHHHHHHHHHhhCceecCCceE
Confidence 1111 011 1122333 334447999999987642 2345555555421 1
Q ss_pred -CCCcEEEEEecCCC-------------------------CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhc
Q 006535 468 -SNSAVIVLGATNRS-------------------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (641)
Q Consensus 468 -~~~~ViVIaATN~p-------------------------d~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~ 518 (641)
.-.+.++|+|||.. ..+.|+|+. |+|..+.+.+++.++..+|++..+.+
T Consensus 707 vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 707 VDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred EeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 11345788899863 124567777 99999999999999999988877654
No 164
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.25 E-value=3.7e-11 Score=135.68 Aligned_cols=208 Identities=22% Similarity=0.287 Sum_probs=131.2
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHH--
Q 006535 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-- 404 (641)
Q Consensus 330 tf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~-- 404 (641)
++.+++|.+...+.+.+.+..+. ..+.+|||+|++||||+++|+++.... +.||+.++|..+-+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 57889999999988888776643 234579999999999999999999874 579999999876432
Q ss_pred ---Hhhcch-------HHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC--------
Q 006535 405 ---YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-------- 466 (641)
Q Consensus 405 ---~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~-------- 466 (641)
..|... ......|+.|. ...|||||||.|....+ ..|+..++.-
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~~~~Q---------------~~Ll~~l~~~~~~~~g~~ 316 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELPLALQ---------------AKLLRVLQYGEIQRVGSD 316 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCCHHHH---------------HHHHHHHhcCCEeeCCCC
Confidence 112100 00112344443 34899999999964432 3333333321
Q ss_pred -CCCCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHh----cCC---CCCCCCC
Q 006535 467 -DSNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVS----KKE---LPLAKDI 527 (641)
Q Consensus 467 -~~~~~ViVIaATN~p-------d~LD~ALlRpgRFd~~I~v~~Pd~~eR~e----ILk~~l~----~~~---l~l~~dv 527 (641)
....++.+|++||.. ..+.+.|.. |+. .+.+..|+..+|.+ +++.++. +.+ ..+.++
T Consensus 317 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~- 392 (509)
T PRK05022 317 RSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPA- 392 (509)
T ss_pred cceecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHH-
Confidence 112367899999875 123333433 333 56788888888864 2333332 211 223333
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCC---ccccHHHHH
Q 006535 528 DLGDIASMTTGFTGADLANLVNEAALLAGRLNK---VVVEKIDFI 569 (641)
Q Consensus 528 dl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~---~~It~~d~~ 569 (641)
.+..|..+..--+.++|++++++|+..+..... ..|+.+|+.
T Consensus 393 a~~~L~~y~WPGNvrEL~~~i~ra~~~~~~~~~~~~~~i~~~~l~ 437 (509)
T PRK05022 393 AQAALLAYDWPGNVRELEHVISRAALLARARGAGRIVTLEAQHLD 437 (509)
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhcCCCccCccceecHHHcC
Confidence 256666666656789999999999988753211 246666654
No 165
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.25 E-value=1.4e-10 Score=137.92 Aligned_cols=166 Identities=23% Similarity=0.314 Sum_probs=113.2
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCC-eeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH----
Q 006535 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPR-GVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE---- 403 (641)
Q Consensus 332 ~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pk-gVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~---- 403 (641)
+.|+|++++.+.+.+.+...+..-. ....|. .+||+||+|||||+||+++|..+ +.+++.++++++.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK----NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc----CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 4699999999999887764221000 112343 47899999999999999999987 46899999888743
Q ss_pred -HHhhcc-----hHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC---------C
Q 006535 404 -LYVGMG-----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------S 468 (641)
Q Consensus 404 -~~vG~~-----~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~---------~ 468 (641)
...|.. ......+.+..+....+||+|||+|.+.+ .+.+.|+..|+... .
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~---------------~v~~~Llq~le~g~~~d~~g~~v~ 649 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHP---------------DIFNLLLQILDDGRLTDSKGRTID 649 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCH---------------HHHHHHHHHhccCceecCCCcEEe
Confidence 222211 11123345555555558999999998742 34566777666421 1
Q ss_pred CCcEEEEEecCCCCC-------------------------------------CChhhhCCCCcceEEEecCCCHHHHHHH
Q 006535 469 NSAVIVLGATNRSDV-------------------------------------LDPALRRPGRFDRVVMVETPDKIGREAI 511 (641)
Q Consensus 469 ~~~ViVIaATN~pd~-------------------------------------LD~ALlRpgRFd~~I~v~~Pd~~eR~eI 511 (641)
-.+.++|+|||.... +.|.++. |+|.+|.|.+.+.++..+|
T Consensus 650 ~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~I 727 (821)
T CHL00095 650 FKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEI 727 (821)
T ss_pred cCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHH
Confidence 246889999885311 2245565 9999999999999999999
Q ss_pred HHHHHhc
Q 006535 512 LKVHVSK 518 (641)
Q Consensus 512 Lk~~l~~ 518 (641)
++..+.+
T Consensus 728 v~~~l~~ 734 (821)
T CHL00095 728 AEIMLKN 734 (821)
T ss_pred HHHHHHH
Confidence 8877653
No 166
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.24 E-value=4.6e-11 Score=135.32 Aligned_cols=207 Identities=20% Similarity=0.278 Sum_probs=127.6
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH
Q 006535 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (641)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~ 403 (641)
...+|++++|.+...+.+.+.+..+.. ....|||+|++||||+++|+++.... +.||+.++|+.+.+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 456899999999987776666543321 23459999999999999999997654 47999999987643
Q ss_pred H-----Hhhcch-------HHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcC--C---
Q 006535 404 L-----YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG--F--- 466 (641)
Q Consensus 404 ~-----~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~--~--- 466 (641)
. ..|... ..-..+|+.|. ...|||||||.|....+ ..|+..++. +
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~~~~Q---------------~~Ll~~l~~~~~~~~ 330 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMSPRMQ---------------AKLLRFLNDGTFRRV 330 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCCHHHH---------------HHHHHHHhcCCcccC
Confidence 2 112110 01123455443 34899999999865432 223333322 1
Q ss_pred ----CCCCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH----H----HHHHHhcCCC---CCC
Q 006535 467 ----DSNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----I----LKVHVSKKEL---PLA 524 (641)
Q Consensus 467 ----~~~~~ViVIaATN~p-------d~LD~ALlRpgRFd~~I~v~~Pd~~eR~e----I----Lk~~l~~~~l---~l~ 524 (641)
....++.||++|+.+ ..+.+.|.. |+. .+.+..|+..+|.+ + ++.+..+.+. .++
T Consensus 331 g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls 407 (520)
T PRK10820 331 GEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLA 407 (520)
T ss_pred CCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 112357899988764 123444544 554 47788888888763 2 2333333332 233
Q ss_pred CCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHH
Q 006535 525 KDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDF 568 (641)
Q Consensus 525 ~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~ 568 (641)
+++ +..|..+...-+.++|++++.+|+..+ ....|+.+|+
T Consensus 408 ~~a-~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 408 ADL-NTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHH-HHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 332 455555544446799999999988765 3456777774
No 167
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=2.5e-10 Score=123.98 Aligned_cols=186 Identities=18% Similarity=0.169 Sum_probs=123.9
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe-------E-----
Q 006535 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------I----- 394 (641)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pf-------i----- 394 (641)
.+.++++|+|++++++.|.+.+.. .+.|..+||+||+|+||+++|.++|+.+-+.- .
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 567899999999999999887753 35677899999999999999999999763210 0
Q ss_pred -E-e-ehhhH--HH---------HH---hh--------cchHHHHHHHHHHH----hcCCceEEEcchhhhhhhcCCccc
Q 006535 395 -S-C-SASEF--VE---------LY---VG--------MGASRVRDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFR 445 (641)
Q Consensus 395 -~-v-s~se~--~~---------~~---vG--------~~~~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~ 445 (641)
. + .|... +. .. .+ -....+|++.+.+. ...|.|++|||+|.+..
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------- 155 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------- 155 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH-------
Confidence 0 0 01100 00 00 01 12345666655543 34567999999998843
Q ss_pred ccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCC
Q 006535 446 IVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAK 525 (641)
Q Consensus 446 ~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~ 525 (641)
...|.||..++.. ..+.++|.+|+.++.+.+.+++ |. ..+.+++|+.++-.++|...... ..
T Consensus 156 --------~aanaLLK~LEep--p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~----~~- 217 (365)
T PRK07471 156 --------NAANALLKVLEEP--PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD----LP- 217 (365)
T ss_pred --------HHHHHHHHHHhcC--CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc----CC-
Confidence 3457888888743 3455777788888888888877 64 48899999999999888876421 11
Q ss_pred CCCHHHHHHhCCCCCHHHHHHHHH
Q 006535 526 DIDLGDIASMTTGFTGADLANLVN 549 (641)
Q Consensus 526 dvdl~~LA~~T~GfSgaDL~~Lv~ 549 (641)
+..+..++..+.| +++....+++
T Consensus 218 ~~~~~~l~~~s~G-sp~~Al~ll~ 240 (365)
T PRK07471 218 DDPRAALAALAEG-SVGRALRLAG 240 (365)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHhc
Confidence 1123456666666 5555555543
No 168
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.23 E-value=3.5e-11 Score=139.26 Aligned_cols=211 Identities=20% Similarity=0.270 Sum_probs=132.1
Q ss_pred ccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH-
Q 006535 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE- 403 (641)
Q Consensus 328 ~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~- 403 (641)
..+|++++|.+.+.+.+.+.+..+.. ....|||+|++||||+++|+++.... +.||+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAK----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 45799999999988877776654322 23469999999999999999999865 57999999976532
Q ss_pred ----HHhhcc----hHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC-----CC--
Q 006535 404 ----LYVGMG----ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----DS-- 468 (641)
Q Consensus 404 ----~~vG~~----~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~-----~~-- 468 (641)
...|.. .......|+.| ...+||||||+.|....+ ..|+..++.- .+
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~~~Q---------------~~Ll~~l~~~~~~~~~~~~ 452 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSPELQ---------------SALLQVLKTGVITRLDSRR 452 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCHHHH---------------HHHHHHHhcCcEEeCCCCc
Confidence 222211 00001123333 245999999999865432 2334333321 11
Q ss_pred --CCcEEEEEecCCCCCCChhhhCCCCcc-------eEEEecCCCHHHHHH----HHHHHHhc----C--CCCCCCCCCH
Q 006535 469 --NSAVIVLGATNRSDVLDPALRRPGRFD-------RVVMVETPDKIGREA----ILKVHVSK----K--ELPLAKDIDL 529 (641)
Q Consensus 469 --~~~ViVIaATN~pd~LD~ALlRpgRFd-------~~I~v~~Pd~~eR~e----ILk~~l~~----~--~l~l~~dvdl 529 (641)
..++.+|+||+.. + ..+...|+|. ..+.+..|+..+|.+ +++.++.+ . .+.+.++ .+
T Consensus 453 ~~~~~~riI~~t~~~--l-~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~-a~ 528 (638)
T PRK11388 453 LIPVDVRVIATTTAD--L-AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDD-AL 528 (638)
T ss_pred eEEeeEEEEEeccCC--H-HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHH-HH
Confidence 1257899999864 1 2222233442 156788888888853 33333322 1 1233333 35
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 006535 530 GDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 530 ~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~ 573 (641)
..|..+...-+.++|+++++.|+..+ ....|+.+|+...+.
T Consensus 529 ~~L~~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~~ 569 (638)
T PRK11388 529 ARLVSYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHLF 569 (638)
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhhh
Confidence 66666665557899999999988764 345788888876663
No 169
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.23 E-value=5.3e-11 Score=127.30 Aligned_cols=194 Identities=23% Similarity=0.259 Sum_probs=122.2
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHH--
Q 006535 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-- 404 (641)
Q Consensus 330 tf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~-- 404 (641)
.+++++|.+...+.+.+.+..+. ..+.+|||+|++||||+++|+++.... +.||+.++|..+-+.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 36789999998888887776543 234579999999999999999998764 579999999875321
Q ss_pred ---Hhhcch-------HHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC-------
Q 006535 405 ---YVGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD------- 467 (641)
Q Consensus 405 ---~vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~------- 467 (641)
..|... ......|..|. ...|||||||.|....+ ..|+..++.-.
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~~~~Q---------------~~L~~~l~~~~~~~~g~~ 135 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAPMLVQ---------------EKLLRVIEYGELERVGGS 135 (326)
T ss_pred HHHHccccccccCCcccccCCchhccC---CCeEEeCChhhCCHHHH---------------HHHHHHHhcCcEEeCCCC
Confidence 112110 01122344333 34899999999864432 33333333211
Q ss_pred --CCCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHH----hcCCCC----CCCC
Q 006535 468 --SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHV----SKKELP----LAKD 526 (641)
Q Consensus 468 --~~~~ViVIaATN~p-------d~LD~ALlRpgRFd~~I~v~~Pd~~eR~e----ILk~~l----~~~~l~----l~~d 526 (641)
....+.||++|+.. ..+.+.|.. ||. .+.+..|+..+|.+ ++..++ .+.+.+ +.++
T Consensus 136 ~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~ 212 (326)
T PRK11608 136 QPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTER 212 (326)
T ss_pred ceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence 12358889988764 345566665 664 45677787777754 344433 222222 2323
Q ss_pred CCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 006535 527 IDLGDIASMTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 527 vdl~~LA~~T~GfSgaDL~~Lv~eAal~A 555 (641)
.+..|..+..--+.++|++++++|+..+
T Consensus 213 -al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 213 -ARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred -HHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 2555566665557799999999998765
No 170
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.22 E-value=2.8e-10 Score=116.98 Aligned_cols=192 Identities=14% Similarity=0.195 Sum_probs=118.6
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCC-CeE--E-e----ehhhHHHH---Hhhcc---h------HHHHHHH-HHHHhcC
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEAEV-PFI--S-C----SASEFVEL---YVGMG---A------SRVRDLF-ARAKKEA 424 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg~-pfi--~-v----s~se~~~~---~vG~~---~------~~vr~lF-~~A~~~a 424 (641)
..++|+||+|+|||++++.+++++.. .+. . + +..++... ..|.. . ..+.+.+ .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35889999999999999999998752 222 1 1 11222211 11211 1 1122222 2233456
Q ss_pred CceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCC--CCCCC----hhhhCCCCcceEE
Q 006535 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR--SDVLD----PALRRPGRFDRVV 498 (641)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~--pd~LD----~ALlRpgRFd~~I 498 (641)
+.+|+|||+|.+... ....+..+..... .....+.|+.+... .+.+. ..+.+ |+...+
T Consensus 124 ~~vliiDe~~~l~~~------------~~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~ 187 (269)
T TIGR03015 124 RALLVVDEAQNLTPE------------LLEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASC 187 (269)
T ss_pred CeEEEEECcccCCHH------------HHHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeee
Confidence 779999999987421 1122233322211 11222333333321 11221 23444 777788
Q ss_pred EecCCCHHHHHHHHHHHHhcCC----CCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 006535 499 MVETPDKIGREAILKVHVSKKE----LPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (641)
Q Consensus 499 ~v~~Pd~~eR~eILk~~l~~~~----l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~r 574 (641)
.+++.+.++..+++...+...+ ..+.++ .++.|++.+.|. ++.+..+++.|...|..++...|+.+++++++..
T Consensus 188 ~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~-~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 188 HLGPLDREETREYIEHRLERAGNRDAPVFSEG-AFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEVREVIAE 265 (269)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHH-HHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 9999999999999998886533 234333 478889999986 5779999999999999999999999999999876
Q ss_pred H
Q 006535 575 S 575 (641)
Q Consensus 575 v 575 (641)
.
T Consensus 266 ~ 266 (269)
T TIGR03015 266 I 266 (269)
T ss_pred h
Confidence 3
No 171
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.22 E-value=3.3e-11 Score=107.72 Aligned_cols=126 Identities=33% Similarity=0.448 Sum_probs=82.8
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCCC---eEEeehhhHHHH--------------HhhcchHHHHHHHHHHHhcCCce
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSASEFVEL--------------YVGMGASRVRDLFARAKKEAPSI 427 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elg~p---fi~vs~se~~~~--------------~vG~~~~~vr~lF~~A~~~aP~I 427 (641)
+..++|+||||||||++++++|..+..+ ++.++++..... .........+..+..++...|++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999999765 888877654331 12334566778888888887899
Q ss_pred EEEcchhhhhhhcCCcccccchhHHHHHHHHH--HhhhcCCCCCCcEEEEEecCC-CCCCChhhhCCCCcceEEEecCC
Q 006535 428 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQL--LTEMDGFDSNSAVIVLGATNR-SDVLDPALRRPGRFDRVVMVETP 503 (641)
Q Consensus 428 LfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqL--L~emd~~~~~~~ViVIaATN~-pd~LD~ALlRpgRFd~~I~v~~P 503 (641)
|+|||++.+....... ..... ..............+|+++|. ....+..+.+ |++.++.+..+
T Consensus 82 iiiDei~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEA-----------LLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHH-----------HHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 9999999986443210 00000 000011122345688888886 3334444444 88888887655
No 172
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.21 E-value=6.2e-11 Score=126.99 Aligned_cols=190 Identities=22% Similarity=0.241 Sum_probs=117.6
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHH-----H
Q 006535 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-----Y 405 (641)
Q Consensus 334 V~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~-----~ 405 (641)
++|.+.+.+.+.+.+..+. ....+|||+|++||||+++|+++.... +.||+.++|..+.+. .
T Consensus 1 liG~S~~m~~~~~~~~~~a----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 4677887777776665543 234569999999999999999998755 579999999755321 1
Q ss_pred hhcch-------HHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC---------CCC
Q 006535 406 VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF---------DSN 469 (641)
Q Consensus 406 vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~---------~~~ 469 (641)
.|... ..-..+|+.|. ..+|||||||.|....+ ..|+..++.- ...
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L~~~~Q---------------~~Ll~~l~~~~~~~~g~~~~~~ 132 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATASLLVQ---------------EKLLRVIEYGEFERVGGSQTLQ 132 (329)
T ss_pred hccccccccCcccccCCchhhCC---CCEEEeCChHhCCHHHH---------------HHHHHHHHcCcEEecCCCceec
Confidence 11100 01112344443 45999999999864432 3333333321 112
Q ss_pred CcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHh----cCCC----CCCCCCCHH
Q 006535 470 SAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVS----KKEL----PLAKDIDLG 530 (641)
Q Consensus 470 ~~ViVIaATN~p-------d~LD~ALlRpgRFd~~I~v~~Pd~~eR~e----ILk~~l~----~~~l----~l~~dvdl~ 530 (641)
.++.+|++||.. ..+.+.|.. ||. .+.+..|+..+|.+ +++.++. +.+. .+.++ .+.
T Consensus 133 ~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~-a~~ 208 (329)
T TIGR02974 133 VDVRLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQ-ARE 208 (329)
T ss_pred cceEEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHH-HHH
Confidence 468899999864 233455554 554 45777888887754 3333332 2222 23333 255
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHH
Q 006535 531 DIASMTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 531 ~LA~~T~GfSgaDL~~Lv~eAal~A 555 (641)
.|..+..--+.++|++++++|+..+
T Consensus 209 ~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 209 QLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHhCCCCchHHHHHHHHHHHHHhC
Confidence 6666665557799999999988776
No 173
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.21 E-value=1.2e-11 Score=123.65 Aligned_cols=119 Identities=28% Similarity=0.450 Sum_probs=71.4
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc--------------------
Q 006535 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------------------- 389 (641)
Q Consensus 330 tf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-------------------- 389 (641)
.|+||+|++++|..|.-.+. | +.++||+||||||||++|+++..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 48999999999999887664 2 3579999999999999999999843
Q ss_pred --------CCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHh
Q 006535 390 --------EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLT 461 (641)
Q Consensus 390 --------g~pfi~vs~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~ 461 (641)
..||.....+.-....+|.+....-..+..|... |||+||+-.+. ..+++.|..
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~G---VLflDE~~ef~---------------~~vld~Lr~ 128 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRG---VLFLDELNEFD---------------RSVLDALRQ 128 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTS---EEEECETTTS----------------HHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCC---EEEechhhhcC---------------HHHHHHHHH
Confidence 1344444433333333444332222233334333 99999997663 356677777
Q ss_pred hhcCC-----------CCCCcEEEEEecCC
Q 006535 462 EMDGF-----------DSNSAVIVLGATNR 480 (641)
Q Consensus 462 emd~~-----------~~~~~ViVIaATN~ 480 (641)
-|+.- .-..++++|+|+|.
T Consensus 129 ple~g~v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 129 PLEDGEVTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp HHHHSBEEEEETTEEEEEB--EEEEEEE-S
T ss_pred HHHCCeEEEEECCceEEEecccEEEEEecc
Confidence 76532 11246899999985
No 174
>PHA02244 ATPase-like protein
Probab=99.21 E-value=4.6e-10 Score=121.05 Aligned_cols=148 Identities=24% Similarity=0.308 Sum_probs=92.6
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHH--h
Q 006535 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY--V 406 (641)
Q Consensus 329 vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~--v 406 (641)
+.+.-+.+..........+..++.. +.+|||+||||||||++|+++|..++.||+.++.. .+.+ .
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~-----------~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~ 160 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNA-----------NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELK 160 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhc-----------CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhc
Confidence 3343344444444555555544433 34699999999999999999999999999999842 2111 1
Q ss_pred h---cchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhh-----hcC-CCCCCcEEEEEe
Q 006535 407 G---MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE-----MDG-FDSNSAVIVLGA 477 (641)
Q Consensus 407 G---~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~e-----md~-~~~~~~ViVIaA 477 (641)
| ....-...-|-.|.. ...+|+|||++.+.+.. ...|+.++.. .++ .....++.+|+|
T Consensus 161 G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~p~v------------q~~L~~lLd~r~l~l~g~~i~~h~~FRlIAT 227 (383)
T PHA02244 161 GFIDANGKFHETPFYEAFK-KGGLFFIDEIDASIPEA------------LIIINSAIANKFFDFADERVTAHEDFRVISA 227 (383)
T ss_pred ccccccccccchHHHHHhh-cCCEEEEeCcCcCCHHH------------HHHHHHHhccCeEEecCcEEecCCCEEEEEe
Confidence 1 100101112333333 34699999999875332 2233444421 111 123467899999
Q ss_pred cCCC-----------CCCChhhhCCCCcceEEEecCCCH
Q 006535 478 TNRS-----------DVLDPALRRPGRFDRVVMVETPDK 505 (641)
Q Consensus 478 TN~p-----------d~LD~ALlRpgRFd~~I~v~~Pd~ 505 (641)
+|.+ ..|+++++. ||- .|+++.|+.
T Consensus 228 sN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~~ 263 (383)
T PHA02244 228 GNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDEK 263 (383)
T ss_pred eCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCcH
Confidence 9973 578999999 995 799999984
No 175
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=9.9e-11 Score=135.64 Aligned_cols=161 Identities=29% Similarity=0.436 Sum_probs=117.1
Q ss_pred ccccCChHHHHHHHHHHHH----hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC---CCeEEeehhhHHHH
Q 006535 332 ADVAGVDEAKEELEEIVEF----LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVEL 404 (641)
Q Consensus 332 ~DV~G~ee~K~~L~eiv~~----L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg---~pfi~vs~se~~~~ 404 (641)
..|+|++++.+.+.+.+.. +.+|. +|-..+||.||+|+|||.||+++|..+. ..++.+++|+|.+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~-------rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPN-------RPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCC-------CCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 3599999999998887765 33331 2334677899999999999999999986 89999999999884
Q ss_pred ------------HhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCC---C
Q 006535 405 ------------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS---N 469 (641)
Q Consensus 405 ------------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~---~ 469 (641)
|+|..+. -.+-+..+....|||++|||+... -.++|-||+.||.-.- .
T Consensus 564 HsVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKAH---------------pdV~nilLQVlDdGrLTD~~ 626 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKAH---------------PDVFNLLLQVLDDGRLTDGQ 626 (786)
T ss_pred HHHHHHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhcC---------------HHHHHHHHHHhcCCeeecCC
Confidence 4443331 234445566667899999998753 2477888888875321 1
Q ss_pred ------CcEEEEEecCCC----------------------------CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHH
Q 006535 470 ------SAVIVLGATNRS----------------------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVH 515 (641)
Q Consensus 470 ------~~ViVIaATN~p----------------------------d~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~ 515 (641)
.+.++|+|||-- ....|+++. |+|..|.|.+.+.+...+|+...
T Consensus 627 Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~ 704 (786)
T COG0542 627 GRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQ 704 (786)
T ss_pred CCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHH
Confidence 257899999842 012355555 88888888888888888888776
Q ss_pred Hhc
Q 006535 516 VSK 518 (641)
Q Consensus 516 l~~ 518 (641)
+.+
T Consensus 705 L~~ 707 (786)
T COG0542 705 LNR 707 (786)
T ss_pred HHH
Confidence 643
No 176
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.19 E-value=2.7e-10 Score=127.92 Aligned_cols=210 Identities=24% Similarity=0.299 Sum_probs=130.7
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC------------------
Q 006535 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE------------------ 390 (641)
Q Consensus 329 vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg------------------ 390 (641)
..|.++.|+..+++.+.-. ......++|+||||+|||+|++.+++.+.
T Consensus 188 ~d~~~v~Gq~~~~~al~la--------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT--------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhhee--------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 4788999998877654311 22346799999999999999999997541
Q ss_pred ----------CCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHH
Q 006535 391 ----------VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (641)
Q Consensus 391 ----------~pfi~vs~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL 460 (641)
.||...+.+--....+|.+...-...+..|... +|||||++.+.. .++..|+
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~~~---------------~~~~~L~ 315 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEFER---------------RTLDALR 315 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhCCH---------------HHHHHHH
Confidence 122221111111122333322223456666554 999999987642 2344555
Q ss_pred hhhcCCC-----------CCCcEEEEEecCCCC---------------------CCChhhhCCCCcceEEEecCCCHHH-
Q 006535 461 TEMDGFD-----------SNSAVIVLGATNRSD---------------------VLDPALRRPGRFDRVVMVETPDKIG- 507 (641)
Q Consensus 461 ~emd~~~-----------~~~~ViVIaATN~pd---------------------~LD~ALlRpgRFd~~I~v~~Pd~~e- 507 (641)
+.|+.-. ...++.+|+|+|... .|..+++. |||.++.++.|+.++
T Consensus 316 ~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l 393 (506)
T PRK09862 316 EPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGIL 393 (506)
T ss_pred HHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHH
Confidence 5443211 235789999999752 47778888 999999999885321
Q ss_pred ---------HHHHHHHH-------HhcCCCCCCCCCC--------------HH--HHHHhCCCCCHHHHHHHHHHHHHHH
Q 006535 508 ---------REAILKVH-------VSKKELPLAKDID--------------LG--DIASMTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 508 ---------R~eILk~~-------l~~~~l~l~~dvd--------------l~--~LA~~T~GfSgaDL~~Lv~eAal~A 555 (641)
..++-+.. ..+.+ .+...+. .. .-+....|+|.+....+++-|..+|
T Consensus 394 ~~~~~~~ess~~i~~rV~~ar~~q~~r~~-~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiA 472 (506)
T PRK09862 394 SKTVVPGESSATVKQRVMAARERQFKRQN-KLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIA 472 (506)
T ss_pred hcccCCCCChHHHHHHHhhHHHHHHHHHH-HHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 11121110 00000 0011110 01 1122445789999999999999999
Q ss_pred HhcCCccccHHHHHHHHH
Q 006535 556 GRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 556 ~r~~~~~It~~d~~eAl~ 573 (641)
..+++..|+.+|+.+|+.
T Consensus 473 DL~g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 473 DIDQSDIITRQHLQEAVS 490 (506)
T ss_pred HHcCCCCCCHHHHHHHHH
Confidence 999999999999999986
No 177
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.19 E-value=5.8e-11 Score=129.17 Aligned_cols=200 Identities=26% Similarity=0.348 Sum_probs=129.4
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHh----cCCCeEEeehhhHH
Q 006535 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSASEFV 402 (641)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~e----lg~pfi~vs~se~~ 402 (641)
....+++++|.+...+++.+-+..+ .+...+||++|++||||+++|+++... .+.||+.+||+.+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAY----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhh----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 4567899999999888777766552 233457999999999999999999753 36799999999775
Q ss_pred HHHh-----hc-------chHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC----
Q 006535 403 ELYV-----GM-------GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF---- 466 (641)
Q Consensus 403 ~~~v-----G~-------~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~---- 466 (641)
+... |. ....-..+|++|... +||+|||+.|....+ ..|+..||.-
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GG---tLfLDEI~~LP~~~Q---------------~kLl~~le~g~~~r 204 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANGG---TLFLDEIHRLPPEGQ---------------EKLLRVLEEGEYRR 204 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCCC---EEehhhhhhCCHhHH---------------HHHHHHHHcCceEe
Confidence 5321 11 122234566666555 999999999865432 3455555531
Q ss_pred -----CCCCcEEEEEecCCCCCCChhhhC-CCCcc--eEEEecCCCHHHHHH--------HHHHHHhcCCCCCCCCC--C
Q 006535 467 -----DSNSAVIVLGATNRSDVLDPALRR-PGRFD--RVVMVETPDKIGREA--------ILKVHVSKKELPLAKDI--D 528 (641)
Q Consensus 467 -----~~~~~ViVIaATN~pd~LD~ALlR-pgRFd--~~I~v~~Pd~~eR~e--------ILk~~l~~~~l~l~~dv--d 528 (641)
.....|.+|+|||.. ++.+++. ..-+. -.+.+..|+..+|.+ +++..+++.+.++.... .
T Consensus 205 vG~~~~~~~dVRli~AT~~~--l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a 282 (403)
T COG1221 205 VGGSQPRPVDVRLICATTED--LEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEA 282 (403)
T ss_pred cCCCCCcCCCceeeeccccC--HHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHH
Confidence 123478999999853 3433332 00111 134667788877753 34444555566655443 1
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 006535 529 LGDIASMTTGFTGADLANLVNEAALLAG 556 (641)
Q Consensus 529 l~~LA~~T~GfSgaDL~~Lv~eAal~A~ 556 (641)
+..+-.+..--+.++|+|+++.++..+.
T Consensus 283 ~~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 283 LRALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 3333333333377999999999998884
No 178
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3.1e-11 Score=132.26 Aligned_cols=212 Identities=24% Similarity=0.298 Sum_probs=129.7
Q ss_pred ccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC-----------------
Q 006535 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE----------------- 390 (641)
Q Consensus 328 ~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg----------------- 390 (641)
..+|.||+|++.+|+.|.....- .+++|++||||||||+||+.+.+-+-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG--------------gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG--------------GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc--------------CCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 45899999999999999877643 34699999999999999999887431
Q ss_pred ------------CCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHH
Q 006535 391 ------------VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (641)
Q Consensus 391 ------------~pfi~vs~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Lnq 458 (641)
.||..-..+.-....+|.+...--.-...|. ..||||||+-.+ ..++|+.
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH---~GVLFLDElpef---------------~~~iLe~ 302 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAH---NGVLFLDELPEF---------------KRSILEA 302 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeec---CCEEEeeccchh---------------hHHHHHH
Confidence 1222111111111122222100001111121 239999998554 2467888
Q ss_pred HHhhhcCCC-----------CCCcEEEEEecCCC-----------------------CCCChhhhCCCCcceEEEecCCC
Q 006535 459 LLTEMDGFD-----------SNSAVIVLGATNRS-----------------------DVLDPALRRPGRFDRVVMVETPD 504 (641)
Q Consensus 459 LL~emd~~~-----------~~~~ViVIaATN~p-----------------------d~LD~ALlRpgRFd~~I~v~~Pd 504 (641)
|-+-|+.-. -..++.+|+|+|.. +.|...+++ |||..++++.++
T Consensus 303 LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~ 380 (490)
T COG0606 303 LREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLS 380 (490)
T ss_pred HhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCC
Confidence 888776421 12367889999862 244556666 999999998876
Q ss_pred HHHHH--------------HHHHHH----HhcCCC----CC-----------C-CCCCHHHHHHhCCCCCHHHHHHHHHH
Q 006535 505 KIGRE--------------AILKVH----VSKKEL----PL-----------A-KDIDLGDIASMTTGFTGADLANLVNE 550 (641)
Q Consensus 505 ~~eR~--------------eILk~~----l~~~~l----~l-----------~-~dvdl~~LA~~T~GfSgaDL~~Lv~e 550 (641)
..++. .+++.+ .+...+ .+ . .+.++.+.+-..-++|.+....+++-
T Consensus 381 ~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKv 460 (490)
T COG0606 381 AGELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKV 460 (490)
T ss_pred HHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 43331 122111 111111 11 1 01122233445557788888888888
Q ss_pred HHHHHHhcCCccccHHHHHHHHH
Q 006535 551 AALLAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 551 Aal~A~r~~~~~It~~d~~eAl~ 573 (641)
|..+|..++...|...|+.+|+.
T Consensus 461 arTiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 461 ARTIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred HhhhhcccCcchhhHHHHHHHHh
Confidence 88888888888888888888875
No 179
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=2.9e-10 Score=120.58 Aligned_cols=170 Identities=16% Similarity=0.307 Sum_probs=115.6
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC--------eEEeehhh
Q 006535 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--------FISCSASE 400 (641)
Q Consensus 329 vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p--------fi~vs~se 400 (641)
.+|+||+|++.+++.|...+. ..+.|..+||+||+|+|||++|+++|..+-+. ++.+...+
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~-----------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSII-----------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred CChhhccCcHHHHHHHHHHHH-----------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 369999999999998887764 23566778999999999999999999976321 22222110
Q ss_pred HHHHHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEE
Q 006535 401 FVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLG 476 (641)
Q Consensus 401 ~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIa 476 (641)
. ..-+...++++.+.+.. ....|++|||+|.+... ..|.||..++. +..++++|.
T Consensus 70 --~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~---------------a~naLLK~LEe--pp~~t~~il 128 (313)
T PRK05564 70 --K--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ---------------AQNAFLKTIEE--PPKGVFIIL 128 (313)
T ss_pred --C--CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHH---------------HHHHHHHHhcC--CCCCeEEEE
Confidence 0 11133457777665432 23349999999988532 34788888884 344556666
Q ss_pred ecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCC
Q 006535 477 ATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (641)
Q Consensus 477 ATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~G 538 (641)
+|+.++.+.+.+++ |. ..+.+.+|+.++....+...+. .+.++ .+..++..+.|
T Consensus 129 ~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~----~~~~~-~~~~l~~~~~g 182 (313)
T PRK05564 129 LCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYN----DIKEE-EKKSAIAFSDG 182 (313)
T ss_pred EeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhc----CCCHH-HHHHHHHHcCC
Confidence 66778899999988 43 4889999999988887776542 12222 34556666665
No 180
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.17 E-value=2.6e-10 Score=133.18 Aligned_cols=195 Identities=22% Similarity=0.305 Sum_probs=124.1
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHH-
Q 006535 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL- 404 (641)
Q Consensus 329 vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~- 404 (641)
.+|++++|.+.+.+.+.+.+..+.. ...+|||+|++|||||++|+++.... +.||+.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~ 442 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQ----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 442 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhH
Confidence 5788999999999888877765432 23469999999999999999998854 679999999765321
Q ss_pred ----Hhhcc-------hHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC-------
Q 006535 405 ----YVGMG-------ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF------- 466 (641)
Q Consensus 405 ----~vG~~-------~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~------- 466 (641)
..|.. .......|+.|. ..+|||||||.+....+ ..|+..++.-
T Consensus 443 ~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L~~~~Q---------------~~L~~~l~~~~~~~~g~ 504 (686)
T PRK15429 443 LESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDMPLELQ---------------PKLLRVLQEQEFERLGS 504 (686)
T ss_pred hhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhCCHHHH---------------HHHHHHHHhCCEEeCCC
Confidence 11210 011123344443 35999999999864432 3333333221
Q ss_pred --CCCCcEEEEEecCCCC-------CCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHh----cCCCC---CCCC
Q 006535 467 --DSNSAVIVLGATNRSD-------VLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVS----KKELP---LAKD 526 (641)
Q Consensus 467 --~~~~~ViVIaATN~pd-------~LD~ALlRpgRFd~~I~v~~Pd~~eR~e----ILk~~l~----~~~l~---l~~d 526 (641)
....++.+|++|+..- .+.+.|.. |+. .+.+..|+..+|.+ +++.++. +.+.+ ++++
T Consensus 505 ~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~ 581 (686)
T PRK15429 505 NKIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAE 581 (686)
T ss_pred CCcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 1124688999998751 22222322 332 56788888888865 3333332 22222 3333
Q ss_pred CCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 006535 527 IDLGDIASMTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 527 vdl~~LA~~T~GfSgaDL~~Lv~eAal~A 555 (641)
.+..|..+..--+.++|++++++|+..+
T Consensus 582 -al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 582 -TLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred -HHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 3566666666557799999999999765
No 181
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.14 E-value=5.2e-10 Score=128.67 Aligned_cols=208 Identities=13% Similarity=0.146 Sum_probs=121.8
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEE-eehh--
Q 006535 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-CSAS-- 399 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~-vs~s-- 399 (641)
.+...+.+++||+|+++..++++.++..... +..+.+.++|+||||||||++++.+|++++..++. .+..
T Consensus 75 ~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~ 147 (637)
T TIGR00602 75 VEKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLP 147 (637)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhh
Confidence 4556788999999999998888877654322 22334459999999999999999999998765533 1110
Q ss_pred -hHH----------HH--HhhcchHHHHHHHHHHHh----------cCCceEEEcchhhhhhhcCCcccccchhHHHHHH
Q 006535 400 -EFV----------EL--YVGMGASRVRDLFARAKK----------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (641)
Q Consensus 400 -e~~----------~~--~vG~~~~~vr~lF~~A~~----------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (641)
... .. ......+.+++++..+.. ....|||||||+.+... + ...+
T Consensus 148 ~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~-----------~~~l 215 (637)
T TIGR00602 148 DFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D-----------TRAL 215 (637)
T ss_pred cccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h-----------HHHH
Confidence 000 00 001223445555555542 23559999999987532 1 1133
Q ss_pred HHHHh-hhcCCCCCCcEEEEEecCCC-------------CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC
Q 006535 457 NQLLT-EMDGFDSNSAVIVLGATNRS-------------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELP 522 (641)
Q Consensus 457 nqLL~-emd~~~~~~~ViVIaATN~p-------------d~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~ 522 (641)
..+|. .... .....+|+|.+-+.. ..|.++++...|. .+|.|.+.......+.|+..+..++..
T Consensus 216 q~lLr~~~~e-~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~ 293 (637)
T TIGR00602 216 HEILRWKYVS-IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKK 293 (637)
T ss_pred HHHHHHHhhc-CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhc
Confidence 34444 2111 122223333331211 1134677743344 378999999999888888877654322
Q ss_pred CCCC------CCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 006535 523 LAKD------IDLGDIASMTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 523 l~~d------vdl~~LA~~T~GfSgaDL~~Lv~eAal~A 555 (641)
...+ -.+..|+.. +.+|++.+++.....+
T Consensus 294 ~~~~~~~p~~~~l~~I~~~----s~GDiRsAIn~LQf~~ 328 (637)
T TIGR00602 294 NGEKIKVPKKTSVELLCQG----CSGDIRSAINSLQFSS 328 (637)
T ss_pred cccccccCCHHHHHHHHHh----CCChHHHHHHHHHHHH
Confidence 2221 135556654 4458888877665554
No 182
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.14 E-value=8.8e-11 Score=128.82 Aligned_cols=197 Identities=27% Similarity=0.384 Sum_probs=127.9
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH
Q 006535 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (641)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~ 403 (641)
+...+.+|+|...+..++.+.++..... ...|||.|.+||||..+||+|.+.. +.||+.+||+.+-+
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~VA~S----------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVVAKS----------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHHhcC----------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 3567889999999999999988875443 3479999999999999999999876 68999999986654
Q ss_pred HH-----hhcchH-------HHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhh-----cCC
Q 006535 404 LY-----VGMGAS-------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEM-----DGF 466 (641)
Q Consensus 404 ~~-----vG~~~~-------~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~em-----d~~ 466 (641)
.. .|.-.. .-+.-|+.|... .||+|||..|.-.-| ..||..+ +..
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGG---TLFLDEIGelPL~lQ---------------aKLLRvLQegEieRv 349 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGG---TLFLDEIGELPLALQ---------------AKLLRVLQEGEIERV 349 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCC---eEechhhccCCHHHH---------------HHHHHHHhhcceeec
Confidence 32 121100 012234444333 899999988754433 2233333 333
Q ss_pred CCC----CcEEEEEecCCCCCCChhhhCCCCcc-------eEEEecCCCHHHHHH---HH-HHHHh----cCC---CCCC
Q 006535 467 DSN----SAVIVLGATNRSDVLDPALRRPGRFD-------RVVMVETPDKIGREA---IL-KVHVS----KKE---LPLA 524 (641)
Q Consensus 467 ~~~----~~ViVIaATN~pd~LD~ALlRpgRFd-------~~I~v~~Pd~~eR~e---IL-k~~l~----~~~---l~l~ 524 (641)
.++ -.|.||||||+. |..++. .|+|- -++.+..|+..+|.+ +| +.+++ +.+ +.++
T Consensus 350 G~~r~ikVDVRiIAATNRD--L~~~V~-~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls 426 (550)
T COG3604 350 GGDRTIKVDVRVIAATNRD--LEEMVR-DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLS 426 (550)
T ss_pred CCCceeEEEEEEEeccchh--HHHHHH-cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccC
Confidence 332 268999999984 444433 35552 156677788888864 22 22222 222 2233
Q ss_pred CCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 006535 525 KDIDLGDIASMTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 525 ~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A 555 (641)
.+ .++.|..+..--+.++|++++++|++.|
T Consensus 427 ~~-Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 427 AE-ALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HH-HHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 33 2555555554446799999999999988
No 183
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.13 E-value=3.3e-10 Score=125.33 Aligned_cols=206 Identities=25% Similarity=0.362 Sum_probs=132.8
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHH-
Q 006535 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL- 404 (641)
Q Consensus 329 vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~- 404 (641)
..+.+++|...+.+++.+.+..+... ...|||+|++||||.++|++|.+.. +.||+.+||..+-+.
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPS----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 45778999999999999999876543 3469999999999999999999876 569999999754332
Q ss_pred ----Hhhcc-------hHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcC-----CCC
Q 006535 405 ----YVGMG-------ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FDS 468 (641)
Q Consensus 405 ----~vG~~-------~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~-----~~~ 468 (641)
..|.. ..+-...|+.|... .||||||..+...-| ..||..++. ..+
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~mpl~~Q---------------~kLLRvLqe~~~~rvG~ 269 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEMPLELQ---------------VKLLRVLQEREFERVGG 269 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccCCHHHH---------------HHHHHHHHcCeeEecCC
Confidence 22211 11122356666554 999999998864432 334444432 222
Q ss_pred ----CCcEEEEEecCCCCCCChhhhCCCCcc-------eEEEecCCCHHHHHH--------HHHHHHhcCCCCCCCCCCH
Q 006535 469 ----NSAVIVLGATNRSDVLDPALRRPGRFD-------RVVMVETPDKIGREA--------ILKVHVSKKELPLAKDIDL 529 (641)
Q Consensus 469 ----~~~ViVIaATN~pd~LD~ALlRpgRFd-------~~I~v~~Pd~~eR~e--------ILk~~l~~~~l~l~~dvdl 529 (641)
+-.|.||+|||+. |...+ ..|+|- -++.+..|...+|.+ +++.+..+.+.+ ...+.-
T Consensus 270 ~~~i~vdvRiIaaT~~d--L~~~v-~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~-~~~~s~ 345 (464)
T COG2204 270 NKPIKVDVRIIAATNRD--LEEEV-AAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRP-PKGFSP 345 (464)
T ss_pred CcccceeeEEEeecCcC--HHHHH-HcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCC-CCCCCH
Confidence 2368999999975 22222 224442 277888999998876 333333333322 233444
Q ss_pred HHHH---HhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHH
Q 006535 530 GDIA---SMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (641)
Q Consensus 530 ~~LA---~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 569 (641)
+.++ .+.+--+.++|+|++++++..+ ....|+.+++.
T Consensus 346 ~a~~~L~~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l~ 385 (464)
T COG2204 346 EALAALLAYDWPGNVRELENVVERAVILS---EGPEIEVEDLP 385 (464)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHhcC---Cccccchhhcc
Confidence 4443 3333335599999999988777 44556666654
No 184
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.13 E-value=5.2e-10 Score=109.76 Aligned_cols=144 Identities=18% Similarity=0.267 Sum_probs=97.9
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCCC------------------------eEEeehhhHHHHHhhcchHHHHHHHH
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------------------FISCSASEFVELYVGMGASRVRDLFA 418 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg~p------------------------fi~vs~se~~~~~vG~~~~~vr~lF~ 418 (641)
+.|..+||+||+|+|||++|++++.++... +..+.... ...+.+.++++.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~-----~~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG-----QSIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc-----CcCCHHHHHHHHH
Confidence 567789999999999999999999986432 11111100 0123356666666
Q ss_pred HHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCc
Q 006535 419 RAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRF 494 (641)
Q Consensus 419 ~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRF 494 (641)
.+.. ....||+|||+|.+... ..+.|+..|+... ...++|.+|+.++.+.+++++ |.
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~~---------------~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~i~s--r~ 147 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNEA---------------AANALLKTLEEPP--PNTLFILITPSPEKLLPTIRS--RC 147 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCHH---------------HHHHHHHHhcCCC--CCeEEEEEECChHhChHHHHh--hc
Confidence 6643 23459999999998532 3466888887533 345555566677899999988 65
Q ss_pred ceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCC
Q 006535 495 DRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTG 538 (641)
Q Consensus 495 d~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~G 538 (641)
..+.+.+|+.++..++++.. + ++++ .+..++..+.|
T Consensus 148 -~~~~~~~~~~~~~~~~l~~~----g--i~~~-~~~~i~~~~~g 183 (188)
T TIGR00678 148 -QVLPFPPLSEEALLQWLIRQ----G--ISEE-AAELLLALAGG 183 (188)
T ss_pred -EEeeCCCCCHHHHHHHHHHc----C--CCHH-HHHHHHHHcCC
Confidence 48999999999988888776 2 3333 36666666655
No 185
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.13 E-value=7e-10 Score=127.40 Aligned_cols=189 Identities=20% Similarity=0.244 Sum_probs=125.7
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcC--CCeEEeehhhHHHHHhhcchHHHHH------------HHHHHHhcCCceEEEc
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMGASRVRD------------LFARAKKEAPSIIFID 431 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg--~pfi~vs~se~~~~~vG~~~~~vr~------------lF~~A~~~aP~ILfID 431 (641)
.+|||.|+||||||++|++++..+. .||+.+......+...|.- .+.. ++.+| ...+||||
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A---~~GvL~lD 91 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEA---PRGVLYVD 91 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeC---CCCcEecc
Confidence 4799999999999999999999874 4788887543333333321 1111 11111 12499999
Q ss_pred chhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC-----------CCCcEEEEEecCCCC---CCChhhhCCCCcceE
Q 006535 432 EIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------SNSAVIVLGATNRSD---VLDPALRRPGRFDRV 497 (641)
Q Consensus 432 EIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~-----------~~~~ViVIaATN~pd---~LD~ALlRpgRFd~~ 497 (641)
||+.+... +.+.|+..|+.-. ....+.|||++|..+ .|.++|+. ||+.+
T Consensus 92 Ei~rl~~~---------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~ 154 (589)
T TIGR02031 92 MANLLDDG---------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALH 154 (589)
T ss_pred chhhCCHH---------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCe
Confidence 99998643 3355555554221 124688999999865 78999999 99988
Q ss_pred EEec-CCCHHHHHHHHHHHHhc-----------------------CCCCCCCCCCHHHHHHh--CCCCC-HHHHHHHHHH
Q 006535 498 VMVE-TPDKIGREAILKVHVSK-----------------------KELPLAKDIDLGDIASM--TTGFT-GADLANLVNE 550 (641)
Q Consensus 498 I~v~-~Pd~~eR~eILk~~l~~-----------------------~~l~l~~dvdl~~LA~~--T~GfS-gaDL~~Lv~e 550 (641)
+.+. .|+.++|.+|++..... ..+.+.+++ +..|+.. ..|.+ .+-...+++-
T Consensus 155 v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~-~~~l~~~~~~~gv~s~Ra~i~~~r~ 233 (589)
T TIGR02031 155 VSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQ-VKELVLTAASLGISGHRADLFAVRA 233 (589)
T ss_pred eecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHH-HHHHHHHHHHcCCCCccHHHHHHHH
Confidence 8776 45778889988775421 112222221 2233221 22443 4566677888
Q ss_pred HHHHHHhcCCccccHHHHHHHHHHHhc
Q 006535 551 AALLAGRLNKVVVEKIDFIHAVERSIA 577 (641)
Q Consensus 551 Aal~A~r~~~~~It~~d~~eAl~rvi~ 577 (641)
|...|..+++..|+.+|+.+|+.-++.
T Consensus 234 ArA~Aal~gr~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 234 AKAHAALHGRTEVTEEDLKLAVELVLL 260 (589)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhh
Confidence 888999999999999999999987763
No 186
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=6.1e-10 Score=118.68 Aligned_cols=184 Identities=15% Similarity=0.218 Sum_probs=124.2
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----------------
Q 006535 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP----------------- 392 (641)
Q Consensus 330 tf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p----------------- 392 (641)
.|++|+|++++++.|.+.+.. .+.|..+||+||+|+||+++|.++|..+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 589999999999999988853 3456789999999999999999999875321
Q ss_pred -eEEeehhhHH------HH---Hhh--------cchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchh
Q 006535 393 -FISCSASEFV------EL---YVG--------MGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSND 450 (641)
Q Consensus 393 -fi~vs~se~~------~~---~vG--------~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~ 450 (641)
++.+...... .. ..| -....+|++.+.+.. ....|++||++|.+..
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~------------ 138 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE------------ 138 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH------------
Confidence 1211110000 00 000 012356666555432 3345999999999853
Q ss_pred HHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHH
Q 006535 451 EREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLG 530 (641)
Q Consensus 451 e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~ 530 (641)
...|.||..|+... + .++|..|+.++.|-|.+++ |. ..+.|++|+.++..++|........ .+.+..
T Consensus 139 ---~aaNaLLK~LEEPp-~--~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~----~~~~~~ 205 (314)
T PRK07399 139 ---AAANALLKTLEEPG-N--GTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI----LNINFP 205 (314)
T ss_pred ---HHHHHHHHHHhCCC-C--CeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc----chhHHH
Confidence 23488999988654 2 3556677788999999998 54 4889999999999998887643211 112346
Q ss_pred HHHHhCCCCCHHHHHHHHHH
Q 006535 531 DIASMTTGFTGADLANLVNE 550 (641)
Q Consensus 531 ~LA~~T~GfSgaDL~~Lv~e 550 (641)
.++....| +++++.++++.
T Consensus 206 ~l~~~a~G-s~~~al~~l~~ 224 (314)
T PRK07399 206 ELLALAQG-SPGAAIANIEQ 224 (314)
T ss_pred HHHHHcCC-CHHHHHHHHHH
Confidence 77777766 77666666654
No 187
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.10 E-value=8.1e-10 Score=121.87 Aligned_cols=155 Identities=26% Similarity=0.414 Sum_probs=90.1
Q ss_pred cccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCC-------CeEEee----hh
Q 006535 331 FADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISCS----AS 399 (641)
Q Consensus 331 f~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~-------pfi~vs----~s 399 (641)
++++.+.++..+.+... +. ..++++|+||||||||++|+++|..+.. .++.++ ..
T Consensus 174 l~d~~i~e~~le~l~~~---L~-----------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKR---LT-----------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHH---Hh-----------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 67777777665554333 32 2357999999999999999999988742 123333 23
Q ss_pred hHHHHHh--hcchH----HHHHHHHHHHhc--CCceEEEcchhhhhhhc--CCcccccchhHHHHHHHH--HHhh--hcC
Q 006535 400 EFVELYV--GMGAS----RVRDLFARAKKE--APSIIFIDEIDAVAKSR--DGRFRIVSNDEREQTLNQ--LLTE--MDG 465 (641)
Q Consensus 400 e~~~~~v--G~~~~----~vr~lF~~A~~~--aP~ILfIDEIDaL~~~r--~~~~~~~~~~e~~~~Lnq--LL~e--md~ 465 (641)
+++..+. +.+.. .+.++...|... .|++||||||+.....+ +.-......+.+.+.... ...+ .+.
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~ 319 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEER 319 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeecccccccc
Confidence 4443221 11111 234455666543 58999999999865332 100000011100000000 0001 123
Q ss_pred CCCCCcEEEEEecCCCC----CCChhhhCCCCcceEEEecC
Q 006535 466 FDSNSAVIVLGATNRSD----VLDPALRRPGRFDRVVMVET 502 (641)
Q Consensus 466 ~~~~~~ViVIaATN~pd----~LD~ALlRpgRFd~~I~v~~ 502 (641)
+....++.||||+|..| .+|.||+| ||. .|++.+
T Consensus 320 f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 55567899999999987 89999999 995 566654
No 188
>PRK04132 replication factor C small subunit; Provisional
Probab=99.10 E-value=1.1e-09 Score=129.21 Aligned_cols=171 Identities=21% Similarity=0.221 Sum_probs=127.7
Q ss_pred eeEEEc--CCCCcHHHHHHHHHHhc-----CCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcC------CceEEEcch
Q 006535 367 GVLLVG--LPGTGKTLLAKAVAGEA-----EVPFISCSASEFVELYVGMGASRVRDLFARAKKEA------PSIIFIDEI 433 (641)
Q Consensus 367 gVLL~G--PPGTGKT~LAkAlA~el-----g~pfi~vs~se~~~~~vG~~~~~vr~lF~~A~~~a------P~ILfIDEI 433 (641)
.-+..| |++.|||++|+++|+++ +.+++.+|+++.. +...++++.+.+.... ..|+||||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 345668 99999999999999997 5689999998742 2346777766654332 259999999
Q ss_pred hhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHH
Q 006535 434 DAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILK 513 (641)
Q Consensus 434 DaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk 513 (641)
|.|... ..+.|+..|+... ..+.+|.+||.+..+.+++++ |. ..+.|++|+.++....|+
T Consensus 640 D~Lt~~---------------AQnALLk~lEep~--~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 640 DALTQD---------------AQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred ccCCHH---------------HHHHHHHHhhCCC--CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHH
Confidence 999543 2377888888544 457888899999999999988 64 588999999999999999
Q ss_pred HHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHH
Q 006535 514 VHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIH 570 (641)
Q Consensus 514 ~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~e 570 (641)
..+.+.++.++++ .+..++..+.| +.+...++++.++... ..|+.+++..
T Consensus 700 ~I~~~Egi~i~~e-~L~~Ia~~s~G-DlR~AIn~Lq~~~~~~-----~~It~~~V~~ 749 (846)
T PRK04132 700 YIAENEGLELTEE-GLQAILYIAEG-DMRRAINILQAAAALD-----DKITDENVFL 749 (846)
T ss_pred HHHHhcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHHHHHHhc-----CCCCHHHHHH
Confidence 8888777776655 58888988887 6677777777654322 2355554443
No 189
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.08 E-value=1.3e-10 Score=108.06 Aligned_cols=113 Identities=33% Similarity=0.395 Sum_probs=67.8
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH--HHhhcchHH------HHHHHHHHHhcCCceEEEcchhhhhh
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE--LYVGMGASR------VRDLFARAKKEAPSIIFIDEIDAVAK 438 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~--~~vG~~~~~------vr~lF~~A~~~aP~ILfIDEIDaL~~ 438 (641)
+|||+||||||||+||+.+|..++.+++.++++...+ ...|.-.-. ....+..+.. .++|++||||+....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a~~ 79 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRAPP 79 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG--H
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccCCH
Confidence 5899999999999999999999999999988765432 111110000 0000111111 467999999987632
Q ss_pred hcCCcccccchhHHHHHHHHHHhhhcCC--------CCCC------cEEEEEecCCCC----CCChhhhCCCCc
Q 006535 439 SRDGRFRIVSNDEREQTLNQLLTEMDGF--------DSNS------AVIVLGATNRSD----VLDPALRRPGRF 494 (641)
Q Consensus 439 ~r~~~~~~~~~~e~~~~LnqLL~emd~~--------~~~~------~ViVIaATN~pd----~LD~ALlRpgRF 494 (641)
+.-..++.++..-.-. .... ++.+|+|+|+.+ .++++|++ ||
T Consensus 80 ------------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 80 ------------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ------------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ------------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 1122333333321100 0011 489999999988 99999999 87
No 190
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.08 E-value=4.9e-09 Score=119.07 Aligned_cols=204 Identities=23% Similarity=0.361 Sum_probs=131.6
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcC--hhHHh----hh-------------------CCCCCCeeEEEcCCCCcH
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRS--PDKYI----RL-------------------GARPPRGVLLVGLPGTGK 378 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~--p~~~~----~l-------------------g~~~pkgVLL~GPPGTGK 378 (641)
.+..+-.|.|+.|.+.+-+.+ +.||+. |..|. ++ +.+..+-+||+||||-||
T Consensus 263 dky~Pk~FtdLLsDe~tNR~~---L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 263 DKYRPKKFTDLLSDEKTNRRM---LGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred cccChhHHHHHhcchhHHHHH---HHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 455677899999999877644 444332 22222 11 122336688999999999
Q ss_pred HHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHHHHH--------hcCCceEEEcchhhhhhhcCCcccccchh
Q 006535 379 TLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAK--------KEAPSIIFIDEIDAVAKSRDGRFRIVSND 450 (641)
Q Consensus 379 T~LAkAlA~elg~pfi~vs~se~~~~~vG~~~~~vr~lF~~A~--------~~aP~ILfIDEIDaL~~~r~~~~~~~~~~ 450 (641)
|+||+.+|.++|+.++.||+++-.. +..++..+..|- ...|.+|+|||||--.
T Consensus 340 TTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~------------- 400 (877)
T KOG1969|consen 340 TTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP------------- 400 (877)
T ss_pred hHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCCc-------------
Confidence 9999999999999999999986432 233443333332 2568899999998532
Q ss_pred HHHHHHHHHHhhhc-------CCCC---------C---CcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHH
Q 006535 451 EREQTLNQLLTEMD-------GFDS---------N---SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAI 511 (641)
Q Consensus 451 e~~~~LnqLL~emd-------~~~~---------~---~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eI 511 (641)
...++.++..+. |-.. . -.--|||.+|.. .-|+|+----|...+.|.+|...-..+-
T Consensus 401 --~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv~R 476 (877)
T KOG1969|consen 401 --RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLVER 476 (877)
T ss_pred --HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCChhHHHHH
Confidence 122233333322 1111 0 012466677743 4567643224788999999998888888
Q ss_pred HHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Q 006535 512 LKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRL 558 (641)
Q Consensus 512 Lk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~ 558 (641)
|+..+.+.++..+.. .+..|++.|. .|++..+|....+|.+.
T Consensus 477 L~~IC~rE~mr~d~~-aL~~L~el~~----~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 477 LNEICHRENMRADSK-ALNALCELTQ----NDIRSCINTLQFLASNV 518 (877)
T ss_pred HHHHHhhhcCCCCHH-HHHHHHHHhc----chHHHHHHHHHHHHHhc
Confidence 888888777654332 2555555554 69999999988887653
No 191
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.07 E-value=2.3e-09 Score=112.66 Aligned_cols=145 Identities=23% Similarity=0.316 Sum_probs=96.6
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC----------------------
Q 006535 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------------------- 390 (641)
Q Consensus 333 DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg---------------------- 390 (641)
+++|.+++...+...+..- .+.|..+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred CcccchhHHHHHHHHHHhc----------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence 5777777777666555421 13445799999999999999999999876
Q ss_pred --CCeEEeehhhHHHHHhhcchHHHHHHHHHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhc
Q 006535 391 --VPFISCSASEFVELYVGMGASRVRDLFARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (641)
Q Consensus 391 --~pfi~vs~se~~~~~vG~~~~~vr~lF~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd 464 (641)
-.++.++.++....- .....++++-+..... ..-||+|||+|.+... ..|.++..|+
T Consensus 72 ~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~---------------A~nallk~lE 134 (325)
T COG0470 72 NHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED---------------AANALLKTLE 134 (325)
T ss_pred CCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH---------------HHHHHHHHhc
Confidence 356666665432211 1234455554444322 3459999999999653 3377888887
Q ss_pred CCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHH
Q 006535 465 GFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGRE 509 (641)
Q Consensus 465 ~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~ 509 (641)
... .+..+|.+||.++.+-+.+.+ |- ..+.|.+|+.....
T Consensus 135 ep~--~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i 174 (325)
T COG0470 135 EPP--KNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAI 174 (325)
T ss_pred cCC--CCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHH
Confidence 444 456777888999888888887 43 36777775444333
No 192
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.03 E-value=6.7e-10 Score=122.74 Aligned_cols=205 Identities=19% Similarity=0.245 Sum_probs=125.2
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHh
Q 006535 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV 406 (641)
Q Consensus 330 tf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~~v 406 (641)
.+.+++|.....+.+.+.+..+. ....+++|+|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIA----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 45678888888777766654432 223569999999999999999998765 57999999987633211
Q ss_pred -----hcc-------hHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC-----C--
Q 006535 407 -----GMG-------ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----D-- 467 (641)
Q Consensus 407 -----G~~-------~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~-----~-- 467 (641)
|.. .......|..| ...+|||||||.|....+ ..|+..++.- .
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~~~q---------------~~l~~~l~~~~~~~~~~~ 268 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDLPLNLQ---------------AKLLRFLQERVIERLGGR 268 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhCCHHHH---------------HHHHHHHhhCeEEeCCCC
Confidence 100 00011122222 245999999999865432 2333333211 1
Q ss_pred --CCCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHhc----CC---CCCCCCC
Q 006535 468 --SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KE---LPLAKDI 527 (641)
Q Consensus 468 --~~~~ViVIaATN~p-------d~LD~ALlRpgRFd~~I~v~~Pd~~eR~e----ILk~~l~~----~~---l~l~~dv 527 (641)
...++.+|++|+.. ..+.+.|.. |+. .+.+..|+..+|.+ +++.++.+ .+ ..+.++
T Consensus 269 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~- 344 (445)
T TIGR02915 269 EEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDD- 344 (445)
T ss_pred ceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHH-
Confidence 12367889998765 233444433 443 46777888888865 33333322 12 123333
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHH
Q 006535 528 DLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (641)
Q Consensus 528 dl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 569 (641)
.+..|..+..--+.++|++++++|+..+ ....|+.+++.
T Consensus 345 a~~~L~~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l~ 383 (445)
T TIGR02915 345 ALRALEAHAWPGNVRELENKVKRAVIMA---EGNQITAEDLG 383 (445)
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHcC
Confidence 3566666665557799999999998765 34567777764
No 193
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.03 E-value=7.6e-09 Score=107.50 Aligned_cols=100 Identities=18% Similarity=0.211 Sum_probs=79.8
Q ss_pred EEEEecCC------------CCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCC
Q 006535 473 IVLGATNR------------SDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (641)
Q Consensus 473 iVIaATN~------------pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfS 540 (641)
++|.+||+ |.-++-.|+. |. ..|...+++.++..+||+..+...++.+.++. ++.|......-|
T Consensus 319 iiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A-~d~Lt~i~~~ts 394 (454)
T KOG2680|consen 319 IIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDA-LDLLTKIGEATS 394 (454)
T ss_pred EEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHH-HHHHHHhhhhhh
Confidence 55667765 5677777777 54 36677888999999999999988877776663 666666666667
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHh
Q 006535 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSI 576 (641)
Q Consensus 541 gaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~rvi 576 (641)
-+...+|+..|.+.|.++....++.+|+..+.+-.+
T Consensus 395 LRYai~Lit~a~~~~~krk~~~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 395 LRYAIHLITAASLVCLKRKGKVVEVDDIERVYRLFL 430 (454)
T ss_pred HHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHHHh
Confidence 888999999999999999999999999998876443
No 194
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=3.1e-09 Score=113.92 Aligned_cols=149 Identities=17% Similarity=0.163 Sum_probs=105.2
Q ss_pred ccccccC-ChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC----------------
Q 006535 330 TFADVAG-VDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---------------- 392 (641)
Q Consensus 330 tf~DV~G-~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p---------------- 392 (641)
.|++|+| ++.+++.|...+.. .+.|..+||+||+|+||+++|+++|+.+-++
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 5888998 88899888887742 3567779999999999999999999976322
Q ss_pred --------eEEeehhhHHHHHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHH
Q 006535 393 --------FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLL 460 (641)
Q Consensus 393 --------fi~vs~se~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL 460 (641)
+..+... . ..-+...++++.+.+.. ...-|++|||+|.+.. ...|.||
T Consensus 72 ~~~~~hpD~~~i~~~---~--~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~---------------~a~NaLL 131 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---G--QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA---------------SAANSLL 131 (329)
T ss_pred HhcCCCCCEEEeccc---c--ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH---------------HHHHHHH
Confidence 1111110 0 01123466766655432 2234999999999853 2347899
Q ss_pred hhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHH
Q 006535 461 TEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKV 514 (641)
Q Consensus 461 ~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~ 514 (641)
..|+. +...+++|.+|+.++.|.+.+++ |. ..+++.+|+.++..++|+.
T Consensus 132 K~LEE--Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 132 KFLEE--PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHhcC--CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 99985 34456677788788899999988 53 3889999999887776653
No 195
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.00 E-value=9.3e-09 Score=111.61 Aligned_cols=253 Identities=22% Similarity=0.279 Sum_probs=147.7
Q ss_pred ccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-------CCCeEEe----
Q 006535 328 TITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISC---- 396 (641)
Q Consensus 328 ~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-------g~pfi~v---- 396 (641)
...|.-++|++..|..|--. --+|+ -.|+||.|+.|||||+++||||.-+ |+||-.-
T Consensus 13 ~~pf~aivGqd~lk~aL~l~---av~P~---------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLN---AVDPQ---------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhh---hcccc---------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 45688899999988765322 22332 2589999999999999999999966 3433110
Q ss_pred --ehhh-------------------HHHHHhhcchHHHH------HHHH----------HHHhcCCceEEEcchhhhhhh
Q 006535 397 --SASE-------------------FVELYVGMGASRVR------DLFA----------RAKKEAPSIIFIDEIDAVAKS 439 (641)
Q Consensus 397 --s~se-------------------~~~~~vG~~~~~vr------~lF~----------~A~~~aP~ILfIDEIDaL~~~ 439 (641)
.|.+ ++..-.|.++.++- ...+ .|+.+ -.|+||||+..|..
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL~d- 158 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLLDD- 158 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEeccccccH-
Confidence 1111 11222233344221 1111 01122 23999999988742
Q ss_pred cCCcccccchhHHHHHHHHHHhhhcC-----------CCCCCcEEEEEecCCC-CCCChhhhCCCCcceEEEecCC-CHH
Q 006535 440 RDGRFRIVSNDEREQTLNQLLTEMDG-----------FDSNSAVIVLGATNRS-DVLDPALRRPGRFDRVVMVETP-DKI 506 (641)
Q Consensus 440 r~~~~~~~~~~e~~~~LnqLL~emd~-----------~~~~~~ViVIaATN~p-d~LD~ALlRpgRFd~~I~v~~P-d~~ 506 (641)
.+.+.||..+.. +.-..++++|+|+|+- ..|-|.|+. ||...+.+..| +.+
T Consensus 159 --------------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~ 222 (423)
T COG1239 159 --------------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLE 222 (423)
T ss_pred --------------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHH
Confidence 344555555432 2334579999999986 488899998 99999999876 689
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHH-HHHHHHHHhcchhhhhcc
Q 006535 507 GREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKID-FIHAVERSIAGIEKKTAK 585 (641)
Q Consensus 507 eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d-~~eAl~rvi~g~~~~~~~ 585 (641)
+|.+|++..+... -.++.-++.++. ...-++ +...+.++.-..|+..+ +...+..+ ......
T Consensus 223 ~rv~Ii~r~~~f~---~~Pe~f~~~~~~---------~~~~lR-~~ii~ar~~l~~V~l~~~~~~~ia~~----~~~~~v 285 (423)
T COG1239 223 ERVEIIRRRLAFE---AVPEAFLEKYAD---------AQRALR-ARIIAARSLLSEVELDDDAETKIAEL----CARLAV 285 (423)
T ss_pred HHHHHHHHHHHhh---cCcHHHHHHHHH---------HHHHHH-HHHHHHHhccccccCcHHHHHHHHHH----HHHhcc
Confidence 9999999887531 112222222222 222222 23334444443333322 22222221 111111
Q ss_pred CChhHHHHHHHHHhHHHHHHhHHhhcCCCCCceeeEeeeeccccchhhhcccc
Q 006535 586 LKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRDSKSQCMSCVCHKA 638 (641)
Q Consensus 586 l~~~ek~~va~hEaghAlv~~~l~~~~~~~~~v~kiti~~~~~~~~~~~~~~~ 638 (641)
...+..+..++++.|+.++ .-..+|+.-+.+.-.-.|+.|.+
T Consensus 286 --~g~radi~~~r~a~a~aa~---------~Gr~~v~~~Di~~a~~l~l~hR~ 327 (423)
T COG1239 286 --DGHRADIVVVRAAKALAAL---------RGRTEVEEEDIREAAELALLHRR 327 (423)
T ss_pred --CCCchhhHHHHHHHHHHHh---------cCceeeehhhHHHHHhhhhhhhh
Confidence 1255667788888888875 34567777777777777777754
No 196
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.2e-09 Score=114.23 Aligned_cols=126 Identities=34% Similarity=0.529 Sum_probs=86.0
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhhCCC--------CCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH-H
Q 006535 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGAR--------PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-L 404 (641)
Q Consensus 334 V~G~ee~K~~L~eiv~~L~~p~~~~~lg~~--------~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~-~ 404 (641)
|+|++.+|+.|.-.|. . .|.++... .-.+|||.||.|||||+||+.+|..+++||...++..+.+ .
T Consensus 63 VIGQe~AKKvLsVAVY--N---HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 63 VIGQEQAKKVLSVAVY--N---HYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred eecchhhhceeeeeeh--h---HHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 8899999987764442 1 23333211 1256999999999999999999999999999999988876 5
Q ss_pred HhhcchHHH-HHHHHHHH----hcCCceEEEcchhhhhhhcCCcccccchh-HHHHHHHHHHhhhcCC
Q 006535 405 YVGMGASRV-RDLFARAK----KEAPSIIFIDEIDAVAKSRDGRFRIVSND-EREQTLNQLLTEMDGF 466 (641)
Q Consensus 405 ~vG~~~~~v-r~lF~~A~----~~aP~ILfIDEIDaL~~~r~~~~~~~~~~-e~~~~LnqLL~emd~~ 466 (641)
|+|+...++ ..++..|. .....||||||||.++++..+... ..| .-+.+-..||..++|-
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SI--TRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSI--TRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCc--ccccCchHHHHHHHHHHcCc
Confidence 888865554 34443331 122459999999999987654311 111 1134556778888764
No 197
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.99 E-value=6.9e-10 Score=108.09 Aligned_cols=131 Identities=29% Similarity=0.459 Sum_probs=81.0
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHH-----H
Q 006535 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-----Y 405 (641)
Q Consensus 334 V~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~-----~ 405 (641)
|+|.+++.+++.+.+..+. ..+.+|||+|++||||+++|+++.+.. +.||+.++|+.+... .
T Consensus 1 liG~s~~m~~~~~~~~~~a----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 5788888877777766543 234679999999999999999999865 579999999866432 2
Q ss_pred hhcch-------HHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcC-----CCC----C
Q 006535 406 VGMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG-----FDS----N 469 (641)
Q Consensus 406 vG~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~-----~~~----~ 469 (641)
.|... ..-..+|+.|... +||||||+.|...-+ ..|+..++. ... .
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~~~~Q---------------~~Ll~~l~~~~~~~~g~~~~~~ 132 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLPPELQ---------------AKLLRVLEEGKFTRLGSDKPVP 132 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS-HHHH---------------HHHHHHHHHSEEECCTSSSEEE
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhhHHHHH---------------HHHHHHHhhchhcccccccccc
Confidence 23211 1123677777665 999999999965433 333333331 111 2
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcc
Q 006535 470 SAVIVLGATNRSDVLDPALRRPGRFD 495 (641)
Q Consensus 470 ~~ViVIaATN~pd~LD~ALlRpgRFd 495 (641)
.++.||++|+.+ |.. +...|+|.
T Consensus 133 ~~~RiI~st~~~--l~~-~v~~g~fr 155 (168)
T PF00158_consen 133 VDVRIIASTSKD--LEE-LVEQGRFR 155 (168)
T ss_dssp --EEEEEEESS---HHH-HHHTTSS-
T ss_pred ccceEEeecCcC--HHH-HHHcCCCh
Confidence 378999999964 333 33345663
No 198
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.7e-09 Score=117.39 Aligned_cols=154 Identities=24% Similarity=0.405 Sum_probs=108.2
Q ss_pred HHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEe-ehhhHHHHHhhcchHHHHHHHHHHHhcCC
Q 006535 347 IVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC-SASEFVELYVGMGASRVRDLFARAKKEAP 425 (641)
Q Consensus 347 iv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~v-s~se~~~~~vG~~~~~vr~lF~~A~~~aP 425 (641)
++...+++++ .+-..+||.||||+|||.||..+|...+.||+.+ +..+++.+.....-..++..|+.|++..-
T Consensus 526 lv~qvk~s~~------s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~l 599 (744)
T KOG0741|consen 526 LVQQVKNSER------SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPL 599 (744)
T ss_pred HHHHhhcccc------CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcc
Confidence 4444555543 4456899999999999999999999999999985 55555443333334568899999999988
Q ss_pred ceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCC-cEEEEEecCCCCCCC-hhhhCCCCcceEEEecCC
Q 006535 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS-AVIVLGATNRSDVLD-PALRRPGRFDRVVMVETP 503 (641)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~-~ViVIaATN~pd~LD-~ALlRpgRFd~~I~v~~P 503 (641)
+||++|+|+.|..- ...+-.....++..|+..+....+.. +.+|++||.+.+.|. -.++. .|+..+.+|..
T Consensus 600 siivvDdiErLiD~-----vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl 672 (744)
T KOG0741|consen 600 SIIVVDDIERLLDY-----VPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNL 672 (744)
T ss_pred eEEEEcchhhhhcc-----cccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCcc
Confidence 99999999998632 23344555677788888887766554 577788887765442 23344 68878888765
Q ss_pred CH-HHHHHHHH
Q 006535 504 DK-IGREAILK 513 (641)
Q Consensus 504 d~-~eR~eILk 513 (641)
.. ++..+++.
T Consensus 673 ~~~~~~~~vl~ 683 (744)
T KOG0741|consen 673 TTGEQLLEVLE 683 (744)
T ss_pred CchHHHHHHHH
Confidence 43 44444444
No 199
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=6.9e-09 Score=109.41 Aligned_cols=83 Identities=30% Similarity=0.424 Sum_probs=61.4
Q ss_pred ceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC--------CCCCcEEEEEec----CCCCCCChhhhCCCC
Q 006535 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF--------DSNSAVIVLGAT----NRSDVLDPALRRPGR 493 (641)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~--------~~~~~ViVIaAT----N~pd~LD~ALlRpgR 493 (641)
.||||||||.++.+.+.+ +.+-.++.+-..||-.++|- -....+++||+. ..|.+|-|.|. ||
T Consensus 252 GIvFIDEIDKIa~~~~~g---~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GR 326 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSG---GPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GR 326 (444)
T ss_pred CeEEEehhhHHHhcCCCC---CCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CC
Confidence 499999999999766422 12334455666777777753 234578999887 56788888885 59
Q ss_pred cceEEEecCCCHHHHHHHHH
Q 006535 494 FDRVVMVETPDKIGREAILK 513 (641)
Q Consensus 494 Fd~~I~v~~Pd~~eR~eILk 513 (641)
|.-.|++...+.++-..||.
T Consensus 327 fPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 327 FPIRVELDALTKEDFERILT 346 (444)
T ss_pred CceEEEcccCCHHHHHHHHc
Confidence 99999999999988887764
No 200
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.94 E-value=3.2e-09 Score=107.06 Aligned_cols=187 Identities=23% Similarity=0.309 Sum_probs=116.0
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-CC----CeEEee
Q 006535 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-EV----PFISCS 397 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-g~----pfi~vs 397 (641)
.+...++.+.||+|.++..+.|+-+...-.- | +++|.||||||||+-+.++|+++ |- -+...+
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~via~~gnm-----------P-~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN 85 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERLSVIAKEGNM-----------P-NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN 85 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHHHHHHHcCCC-----------C-ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc
Confidence 4566788899999999999998887754332 2 59999999999999999999986 31 234444
Q ss_pred hhhHHHHHhhcchHHHHH---HHHHHHhc-CC---ceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCC
Q 006535 398 ASEFVELYVGMGASRVRD---LFARAKKE-AP---SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (641)
Q Consensus 398 ~se~~~~~vG~~~~~vr~---lF~~A~~~-aP---~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~ 470 (641)
.++- .+...+|. .|.+-+-. .| .||++||.|.+.... .+ .|-+.|+-+.+..
T Consensus 86 ASde------RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gA--------QQ-------AlRRtMEiyS~tt 144 (333)
T KOG0991|consen 86 ASDE------RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGA--------QQ-------ALRRTMEIYSNTT 144 (333)
T ss_pred Cccc------cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHH--------HH-------HHHHHHHHHcccc
Confidence 4432 23333443 34443322 22 399999999985322 22 2223344334333
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHH
Q 006535 471 AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (641)
Q Consensus 471 ~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~e 550 (641)
.+..++|..+.+-+.+.+ |-. .+.+...+..+...-|....+..+++..++ -++.+.-..+| |+++.+|.
T Consensus 145 --RFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~d-gLeaiifta~G----DMRQalNn 214 (333)
T KOG0991|consen 145 --RFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDD-GLEAIIFTAQG----DMRQALNN 214 (333)
T ss_pred --hhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcc-hHHHhhhhccc----hHHHHHHH
Confidence 455677887777666665 321 344555566665555555555566776655 36666655444 77777666
Q ss_pred HH
Q 006535 551 AA 552 (641)
Q Consensus 551 Aa 552 (641)
..
T Consensus 215 LQ 216 (333)
T KOG0991|consen 215 LQ 216 (333)
T ss_pred HH
Confidence 44
No 201
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.94 E-value=2.9e-09 Score=117.88 Aligned_cols=208 Identities=20% Similarity=0.297 Sum_probs=125.0
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHH-
Q 006535 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY- 405 (641)
Q Consensus 330 tf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~~- 405 (641)
.+.+++|.......+.+.+..+.. ....+|++|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIAL----------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcC----------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 445688888776666555443322 23469999999999999999998764 5799999998663321
Q ss_pred ----hhcchH-------HHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC-----CC-
Q 006535 406 ----VGMGAS-------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----DS- 468 (641)
Q Consensus 406 ----vG~~~~-------~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~-----~~- 468 (641)
.|.... .....|..| ...+|||||||.|....+ ..|+..++.- ..
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l~~~~q---------------~~L~~~l~~~~~~~~~~~ 272 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEMPLVLQ---------------AKLLRILQEREFERIGGH 272 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhCCHHHH---------------HHHHHHHhcCcEEeCCCC
Confidence 111000 001122222 234999999999865432 3333333321 11
Q ss_pred ---CCcEEEEEecCCCCCCChhhhCCCCcce-------EEEecCCCHHHHHH----HHHHHHhc----CCC---CCCCCC
Q 006535 469 ---NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSK----KEL---PLAKDI 527 (641)
Q Consensus 469 ---~~~ViVIaATN~pd~LD~ALlRpgRFd~-------~I~v~~Pd~~eR~e----ILk~~l~~----~~l---~l~~dv 527 (641)
..++.+|++||.. + ..+.+.|+|.. .+.+..|+..+|.+ ++..++.+ .+. .+.++
T Consensus 273 ~~~~~~~rii~~t~~~--l-~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~- 348 (457)
T PRK11361 273 QTIKVDIRIIAATNRD--L-QAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPM- 348 (457)
T ss_pred ceeeeceEEEEeCCCC--H-HHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHH-
Confidence 2357899999864 1 12333344432 56778888888764 33333322 111 23332
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006535 528 DLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 528 dl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl 572 (641)
.+..|..+..--+.++|++++++|+..+ ....|+.+|+...+
T Consensus 349 a~~~L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~~~ 390 (457)
T PRK11361 349 AMSLLTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPPQI 390 (457)
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChHhh
Confidence 2555666665557799999999988765 44578888886544
No 202
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=6.7e-09 Score=111.36 Aligned_cols=154 Identities=18% Similarity=0.272 Sum_probs=104.2
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC------------------------eEEeehhhHHHHHhhcchHHHHHHH
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP------------------------FISCSASEFVELYVGMGASRVRDLF 417 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p------------------------fi~vs~se~~~~~vG~~~~~vr~lF 417 (641)
.+.|..+||+||+|+|||++|+++|+.+.+. ++.+...+- -..-+.+.+|++.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~---~~~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA---DKTIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC---CCCCCHHHHHHHH
Confidence 4567889999999999999999999976431 122211000 0012346778777
Q ss_pred HHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCC
Q 006535 418 ARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGR 493 (641)
Q Consensus 418 ~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgR 493 (641)
+.+.. ....|++|||+|.+.. ...|.||..++. +..++++|.+|+.++.|.|.+++ |
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m~~---------------~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--R 156 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMNR---------------NAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--R 156 (328)
T ss_pred HHHhhccccCCCeEEEECChhhCCH---------------HHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--h
Confidence 66643 3345999999999853 344889999985 34567888899999999999998 6
Q ss_pred cceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHH
Q 006535 494 FDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADL 544 (641)
Q Consensus 494 Fd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL 544 (641)
.. .+.|.+|+.++-.+.|...... . .+-+...++....| ++...
T Consensus 157 c~-~~~~~~~~~~~~~~~L~~~~~~----~-~~~~~~~~l~la~G-sp~~A 200 (328)
T PRK05707 157 CQ-QQACPLPSNEESLQWLQQALPE----S-DERERIELLTLAGG-SPLRA 200 (328)
T ss_pred ce-eeeCCCcCHHHHHHHHHHhccc----C-ChHHHHHHHHHcCC-CHHHH
Confidence 53 6899999999888888765311 1 11123455566665 44433
No 203
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.93 E-value=1.6e-08 Score=109.00 Aligned_cols=82 Identities=23% Similarity=0.316 Sum_probs=59.1
Q ss_pred cc-cccCChHHHHHHHHHHHHhcChhHHhhhC-CCCCCeeEEEcCCCCcHHHHHHHHHHhcCC-------CeEEeeh---
Q 006535 331 FA-DVAGVDEAKEELEEIVEFLRSPDKYIRLG-ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------PFISCSA--- 398 (641)
Q Consensus 331 f~-DV~G~ee~K~~L~eiv~~L~~p~~~~~lg-~~~pkgVLL~GPPGTGKT~LAkAlA~elg~-------pfi~vs~--- 398 (641)
|+ |++|++++++++ +++++.... | ....+.++|+||||+|||+||++||+.++. |++.+.+
T Consensus 49 F~~~~~G~~~~i~~l---v~~l~~~a~----g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~ 121 (361)
T smart00763 49 FDHDFFGMEEAIERF---VNYFKSAAQ----GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGE 121 (361)
T ss_pred cchhccCcHHHHHHH---HHHHHHHHh----cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCC
Confidence 56 899999996654 455444321 2 234567899999999999999999999976 9999988
Q ss_pred -hhHHHHHhhcchHHHHHHHHH
Q 006535 399 -SEFVELYVGMGASRVRDLFAR 419 (641)
Q Consensus 399 -se~~~~~vG~~~~~vr~lF~~ 419 (641)
+.+.+...+.....+|+.|.+
T Consensus 122 ~sp~~e~Pl~l~p~~~r~~~~~ 143 (361)
T smart00763 122 ESPMHEDPLHLFPDELREDLED 143 (361)
T ss_pred CCCCccCCcccCCHHHHHHHHH
Confidence 666665555555555555543
No 204
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.93 E-value=6.3e-09 Score=115.87 Aligned_cols=208 Identities=21% Similarity=0.267 Sum_probs=128.8
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHH-
Q 006535 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY- 405 (641)
Q Consensus 330 tf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~~- 405 (641)
.+.+++|.......+.+.+..+. .....+||.|++|||||++|+++.... +.||+.++|..+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 35679999888777776665432 234469999999999999999999875 5799999998763221
Q ss_pred ----hhcchH------H-HHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC-------
Q 006535 406 ----VGMGAS------R-VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD------- 467 (641)
Q Consensus 406 ----vG~~~~------~-vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~------- 467 (641)
.|.... . ....|..+ ....|||||||.|....+ ..|+..++...
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~~~~q---------------~~L~~~l~~~~~~~~~~~ 267 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMPLDVQ---------------TRLLRVLADGQFYRVGGY 267 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCCHHHH---------------HHHHHHHhcCcEEeCCCC
Confidence 111000 0 01112222 234899999999864432 23444333211
Q ss_pred --CCCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHHH----HHHHHHhc----CCCC---CCCCC
Q 006535 468 --SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGREA----ILKVHVSK----KELP---LAKDI 527 (641)
Q Consensus 468 --~~~~ViVIaATN~p-------d~LD~ALlRpgRFd~~I~v~~Pd~~eR~e----ILk~~l~~----~~l~---l~~dv 527 (641)
....+.+|++|+.. ..+.+.|.. ||. .+.+..|+..+|.+ ++..++.+ .+.+ +.++
T Consensus 268 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~- 343 (469)
T PRK10923 268 APVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPE- 343 (469)
T ss_pred CeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHH-
Confidence 12357889898764 234455555 553 46677777766654 44444432 2221 3333
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006535 528 DLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 528 dl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl 572 (641)
.+..|..+..--+.++|+++++.|+..+ ....|+.+|+...+
T Consensus 344 a~~~L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 344 TEAALTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 3566666666567799999999998776 34578888876544
No 205
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.93 E-value=1.4e-09 Score=106.14 Aligned_cols=111 Identities=32% Similarity=0.358 Sum_probs=74.4
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCC----CeEEeehhhHHHHHhhcchHHHHHHHHHH----HhcCCceEEEcchhhhh
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEAEV----PFISCSASEFVELYVGMGASRVRDLFARA----KKEAPSIIFIDEIDAVA 437 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg~----pfi~vs~se~~~~~vG~~~~~vr~lF~~A----~~~aP~ILfIDEIDaL~ 437 (641)
..+||.||+|+|||.+|+++|..+.. +++.++++++.+. +.....+..++..+ ......||||||||.+.
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 46899999999999999999999996 9999999988761 11122222222211 11111299999999998
Q ss_pred hhcCCcccccchhHHHHHHHHHHhhhcCCC---------CCCcEEEEEecCCCC
Q 006535 438 KSRDGRFRIVSNDEREQTLNQLLTEMDGFD---------SNSAVIVLGATNRSD 482 (641)
Q Consensus 438 ~~r~~~~~~~~~~e~~~~LnqLL~emd~~~---------~~~~ViVIaATN~pd 482 (641)
+..+ .+.+-....+.+.||..+|+-. .-.++++|+|+|--.
T Consensus 82 ~~~~----~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 82 PSNS----GGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HTTT----TCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccc----ccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 7522 2234444567788888776421 124789999999653
No 206
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.91 E-value=1.4e-08 Score=119.75 Aligned_cols=157 Identities=20% Similarity=0.218 Sum_probs=89.8
Q ss_pred cccCChHHHHHHHHHHHHhcChhH-----------HhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-------CCCeE
Q 006535 333 DVAGVDEAKEELEEIVEFLRSPDK-----------YIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFI 394 (641)
Q Consensus 333 DV~G~ee~K~~L~eiv~~L~~p~~-----------~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-------g~pfi 394 (641)
.|.|++.+|+.+. +..+..-.+ |.....+...+|||+|+||||||.+|++++... |.++.
T Consensus 451 ~I~G~e~vK~ail--L~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s 528 (915)
T PTZ00111 451 SIKARNNVKIGLL--CQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSS 528 (915)
T ss_pred eEECCHHHHHHHH--HHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCc
Confidence 5888888887662 222221111 000123445589999999999999999999854 24555
Q ss_pred EeehhhHHHHHh-hcchHHH-HHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC------
Q 006535 395 SCSASEFVELYV-GMGASRV-RDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF------ 466 (641)
Q Consensus 395 ~vs~se~~~~~v-G~~~~~v-r~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~------ 466 (641)
.+.+..+..... ..++..+ ...+..|. ..+++|||+|.+....+ ..|+..|+.-
T Consensus 529 ~vgLTa~~~~~d~~tG~~~le~GaLvlAd---gGtL~IDEidkms~~~Q---------------~aLlEaMEqqtIsI~K 590 (915)
T PTZ00111 529 SVGLTASIKFNESDNGRAMIQPGAVVLAN---GGVCCIDELDKCHNESR---------------LSLYEVMEQQTVTIAK 590 (915)
T ss_pred cccccchhhhcccccCcccccCCcEEEcC---CCeEEecchhhCCHHHH---------------HHHHHHHhCCEEEEec
Confidence 554443321000 0010000 00111222 24999999999854321 3344444321
Q ss_pred -----CCCCcEEEEEecCCC-------------CCCChhhhCCCCcceEEE-ecCCCHHHHHHH
Q 006535 467 -----DSNSAVIVLGATNRS-------------DVLDPALRRPGRFDRVVM-VETPDKIGREAI 511 (641)
Q Consensus 467 -----~~~~~ViVIaATN~p-------------d~LD~ALlRpgRFd~~I~-v~~Pd~~eR~eI 511 (641)
.-+..+.||||+|+. -.|+++|++ |||..+. ++.|+.+.-..|
T Consensus 591 aGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 591 AGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred CCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHH
Confidence 123578999999974 256899999 9997754 467776544444
No 207
>PRK08116 hypothetical protein; Validated
Probab=98.88 E-value=1.1e-08 Score=106.62 Aligned_cols=124 Identities=21% Similarity=0.265 Sum_probs=73.4
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHhhc----chHHHHHHHHHHHhcCCceEEEcchhhh
Q 006535 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM----GASRVRDLFARAKKEAPSIIFIDEIDAV 436 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~~vG~----~~~~vr~lF~~A~~~aP~ILfIDEIDaL 436 (641)
.+.|++|+|+||||||+||.++|+++ +.+++.++..+++..+... +.....++++.. . ...+|+|||+...
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l-~-~~dlLviDDlg~e 190 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL-V-NADLLILDDLGAE 190 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh-c-CCCEEEEecccCC
Confidence 34679999999999999999999985 7899999998887654321 111222333322 2 2349999998542
Q ss_pred hhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC-CC----CChhhhCCCCc---ceEEEecCCCH
Q 006535 437 AKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS-DV----LDPALRRPGRF---DRVVMVETPDK 505 (641)
Q Consensus 437 ~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~p-d~----LD~ALlRpgRF---d~~I~v~~Pd~ 505 (641)
. ..+... ..|+..++.... .+..+|.|||.+ +. ++.++.+ |+ ...|.+.-||.
T Consensus 191 ~----------~t~~~~---~~l~~iin~r~~-~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 191 R----------DTEWAR---EKVYNIIDSRYR-KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred C----------CCHHHH---HHHHHHHHHHHH-CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 1 112222 233333332211 223456677765 22 4566665 53 33566666664
No 208
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.86 E-value=5.7e-08 Score=110.42 Aligned_cols=222 Identities=18% Similarity=0.271 Sum_probs=142.1
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc----------CCCeEEeehhhHH
Q 006535 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSASEFV 402 (641)
Q Consensus 333 DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el----------g~pfi~vs~se~~ 402 (641)
.|.+.+....++..+++..-..+ .....+++.|-||||||.+++.+..++ ..+|+.+|+-.+.
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~-------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~ 469 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQ-------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLA 469 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCC-------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeec
Confidence 35666666666666665533221 122378999999999999999998855 3677888876554
Q ss_pred HH---Hh-------hc------chHHHHHHHHHH-HhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcC
Q 006535 403 EL---YV-------GM------GASRVRDLFARA-KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 465 (641)
Q Consensus 403 ~~---~v-------G~------~~~~vr~lF~~A-~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~ 465 (641)
++ |. |. +...+..-|... ....+|||+|||+|.|....+ .++..|+..-.
T Consensus 470 ~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q------------dVlYn~fdWpt- 536 (767)
T KOG1514|consen 470 SPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ------------DVLYNIFDWPT- 536 (767)
T ss_pred CHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH------------HHHHHHhcCCc-
Confidence 42 21 11 122233333311 134578999999999986543 34455544432
Q ss_pred CCCCCcEEEEEecCCCCCCChhhhC---CCCcc-eEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCH
Q 006535 466 FDSNSAVIVLGATNRSDVLDPALRR---PGRFD-RVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG 541 (641)
Q Consensus 466 ~~~~~~ViVIaATN~pd~LD~ALlR---pgRFd-~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSg 541 (641)
..+.+++||+..|..+ |++.++- ..|++ ..+.|.+++..+.++|+...+.... .+..+ ..+-+|+.-...||
T Consensus 537 -~~~sKLvvi~IaNTmd-lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~-~f~~~-aielvarkVAavSG 612 (767)
T KOG1514|consen 537 -LKNSKLVVIAIANTMD-LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLD-AFENK-AIELVARKVAAVSG 612 (767)
T ss_pred -CCCCceEEEEeccccc-CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchh-hcchh-HHHHHHHHHHhccc
Confidence 3356788888888754 3444432 12443 4688999999999999999986431 22222 23444444444444
Q ss_pred --HHHHHHHHHHHHHHHhcCC-------ccccHHHHHHHHHHHhcc
Q 006535 542 --ADLANLVNEAALLAGRLNK-------VVVEKIDFIHAVERSIAG 578 (641)
Q Consensus 542 --aDL~~Lv~eAal~A~r~~~-------~~It~~d~~eAl~rvi~g 578 (641)
+....+|++|...|..+.. ..|+..|+.+|+......
T Consensus 613 DaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~ 658 (767)
T KOG1514|consen 613 DARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLAS 658 (767)
T ss_pred cHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhh
Confidence 6677889999999877654 568999999999986654
No 209
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.85 E-value=1.5e-08 Score=116.95 Aligned_cols=101 Identities=20% Similarity=0.276 Sum_probs=65.4
Q ss_pred cEEEEEecCCC--CCCChhhhCCCCcc---eEEEecC--C-CHHHHHHHHHHHHhcC----CC-CCCCCCCHHHHHH---
Q 006535 471 AVIVLGATNRS--DVLDPALRRPGRFD---RVVMVET--P-DKIGREAILKVHVSKK----EL-PLAKDIDLGDIAS--- 534 (641)
Q Consensus 471 ~ViVIaATN~p--d~LD~ALlRpgRFd---~~I~v~~--P-d~~eR~eILk~~l~~~----~l-~l~~dvdl~~LA~--- 534 (641)
.+.||+++|+. ..+||+|.. ||. ..+.++. + +.+.+..+++...+.. +. +++.+. +..|.+
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eA-Va~LI~~~~ 353 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDA-VEEIIREAK 353 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHH-HHHHHHHHH
Confidence 67899999885 567899988 775 4455442 2 2455566665444321 11 222221 233322
Q ss_pred hCCC------CCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 006535 535 MTTG------FTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (641)
Q Consensus 535 ~T~G------fSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~r 574 (641)
+..| +..++|.+++++|...|...+...|+.+|+.+|+.+
T Consensus 354 R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 354 RRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 1122 346899999999999999999999999999998865
No 210
>PRK15115 response regulator GlrR; Provisional
Probab=98.84 E-value=1.1e-08 Score=113.10 Aligned_cols=205 Identities=22% Similarity=0.332 Sum_probs=121.7
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHh---
Q 006535 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV--- 406 (641)
Q Consensus 333 DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~~v--- 406 (641)
.++|.......+.+.+..+. .....++|+|++|||||++|+++.... +.||+.++|..+.+...
T Consensus 135 ~lig~s~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~ 204 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA----------QSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESE 204 (444)
T ss_pred cccccCHHHHHHHHHHHhhc----------cCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHH
Confidence 46676665544443333322 123469999999999999999998865 58999999986533211
Q ss_pred --hcch-------HHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC-----CC----
Q 006535 407 --GMGA-------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----DS---- 468 (641)
Q Consensus 407 --G~~~-------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~-----~~---- 468 (641)
|... .....+|..+ ...+|||||||.|....+ ..|+..++.- ..
T Consensus 205 lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~~~q---------------~~L~~~l~~~~~~~~g~~~~~ 266 (444)
T PRK15115 205 LFGHARGAFTGAVSNREGLFQAA---EGGTLFLDEIGDMPAPLQ---------------VKLLRVLQERKVRPLGSNRDI 266 (444)
T ss_pred hcCCCcCCCCCCccCCCCcEEEC---CCCEEEEEccccCCHHHH---------------HHHHHHHhhCCEEeCCCCcee
Confidence 1100 0001122222 235999999999865433 2333333321 11
Q ss_pred CCcEEEEEecCCCCCCChhhhCCCCcc-------eEEEecCCCHHHHHH----HHHHHHhc----CCC---CCCCCCCHH
Q 006535 469 NSAVIVLGATNRSDVLDPALRRPGRFD-------RVVMVETPDKIGREA----ILKVHVSK----KEL---PLAKDIDLG 530 (641)
Q Consensus 469 ~~~ViVIaATN~pd~LD~ALlRpgRFd-------~~I~v~~Pd~~eR~e----ILk~~l~~----~~l---~l~~dvdl~ 530 (641)
..++.+|++|+.. ++..+ ..|+|. ..+.+..|+..+|.+ +++.++.+ .+. .+.++ .+.
T Consensus 267 ~~~~rii~~~~~~--l~~~~-~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~-a~~ 342 (444)
T PRK15115 267 DIDVRIISATHRD--LPKAM-ARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTD-AMK 342 (444)
T ss_pred eeeEEEEEeCCCC--HHHHH-HcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHH-HHH
Confidence 1267899999863 33333 224442 156778888888854 33444332 111 23333 366
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006535 531 DIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 531 ~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl 572 (641)
.|..+...-+.++|+++++.|+..+ ....|+.+++...+
T Consensus 343 ~L~~~~WpgNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 381 (444)
T PRK15115 343 RLMTASWPGNVRQLVNVIEQCVALT---SSPVISDALVEQAL 381 (444)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhC---CCCccChhhhhhhh
Confidence 7777775558899999999988764 44578888876544
No 211
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.81 E-value=1.5e-08 Score=112.59 Aligned_cols=206 Identities=21% Similarity=0.270 Sum_probs=121.8
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHH---
Q 006535 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY--- 405 (641)
Q Consensus 332 ~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~~--- 405 (641)
.+++|..+...++.+.+..+. .....+++.|.+||||+++|+++.... +.||+.++|..+.+..
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~ 203 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLS----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIES 203 (463)
T ss_pred cceeecCHHHHHHHHHHHHHh----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHH
Confidence 468888887777666554432 223469999999999999999998764 5799999997653321
Q ss_pred --hhcchHH-------HHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC-----C----
Q 006535 406 --VGMGASR-------VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----D---- 467 (641)
Q Consensus 406 --vG~~~~~-------vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~-----~---- 467 (641)
.|..... ....|.. ...+.|||||||.|....+ ..|+..++.. .
T Consensus 204 ~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~ei~~l~~~~q---------------~~ll~~l~~~~~~~~~~~~~ 265 (463)
T TIGR01818 204 ELFGHEKGAFTGANTRRQGRFEQ---ADGGTLFLDEIGDMPLDAQ---------------TRLLRVLADGEFYRVGGRTP 265 (463)
T ss_pred HhcCCCCCCCCCcccCCCCcEEE---CCCCeEEEEchhhCCHHHH---------------HHHHHHHhcCcEEECCCCce
Confidence 1110000 0011222 2356899999999864432 2333333211 1
Q ss_pred CCCcEEEEEecCCC-------CCCChhhhCCCCcceEEEecCCCHHHHH----HHHHHHHhc----CCC---CCCCCCCH
Q 006535 468 SNSAVIVLGATNRS-------DVLDPALRRPGRFDRVVMVETPDKIGRE----AILKVHVSK----KEL---PLAKDIDL 529 (641)
Q Consensus 468 ~~~~ViVIaATN~p-------d~LD~ALlRpgRFd~~I~v~~Pd~~eR~----eILk~~l~~----~~l---~l~~dvdl 529 (641)
...++.+|++|+.. ..+.+.|.. |+. .+.+..|+..+|. .++..++.+ .+. .+.++ .+
T Consensus 266 ~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~ 341 (463)
T TIGR01818 266 IKVDVRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPE-AL 341 (463)
T ss_pred eeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHH-HH
Confidence 12357888888764 123334433 332 3466666665554 344444332 121 23332 25
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006535 530 GDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 530 ~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl 572 (641)
..|..+..--+.++|+++++.|+..+ ....|+.+|+...+
T Consensus 342 ~~L~~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 342 ERLKQLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 55555554446699999999998776 34578888887655
No 212
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.78 E-value=1.8e-08 Score=97.44 Aligned_cols=133 Identities=24% Similarity=0.352 Sum_probs=86.4
Q ss_pred CChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCC-----------------------C
Q 006535 336 GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----------------------P 392 (641)
Q Consensus 336 G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~-----------------------p 392 (641)
|++++.+.|.+++.. .+.|..+||+||+|+||+++|+++|..+-. .
T Consensus 1 gq~~~~~~L~~~~~~-----------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHc-----------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 788888888877752 356778999999999999999999997622 1
Q ss_pred eEEeehhhHHHHHhhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCC
Q 006535 393 FISCSASEFVELYVGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS 468 (641)
Q Consensus 393 fi~vs~se~~~~~vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~ 468 (641)
++.++..... ..-..+.++++.+.+.. ...-|++|||+|.+.. ...|.||..|+..
T Consensus 70 ~~~~~~~~~~---~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~---------------~a~NaLLK~LEep-- 129 (162)
T PF13177_consen 70 FIIIKPDKKK---KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE---------------EAQNALLKTLEEP-- 129 (162)
T ss_dssp EEEEETTTSS---SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H---------------HHHHHHHHHHHST--
T ss_pred eEEEeccccc---chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH---------------HHHHHHHHHhcCC--
Confidence 2222211100 01234667766665532 2344999999999853 3448899999844
Q ss_pred CCcEEEEEecCCCCCCChhhhCCCCcceEEEecC
Q 006535 469 NSAVIVLGATNRSDVLDPALRRPGRFDRVVMVET 502 (641)
Q Consensus 469 ~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~ 502 (641)
..++++|.+|+.++.|.+.+++ |. ..+.+++
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred CCCEEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 4567888888889999999998 54 2555554
No 213
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.78 E-value=4.6e-08 Score=102.74 Aligned_cols=194 Identities=19% Similarity=0.199 Sum_probs=123.2
Q ss_pred ccCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006535 323 SEQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 323 ~~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~ 402 (641)
.+..++-+++|++++++....+.++.+.-.. | +.|+|||||||||....+.|..+..|.-. .+-+.
T Consensus 32 vekyrP~~l~dv~~~~ei~st~~~~~~~~~l-----------P-h~L~YgPPGtGktsti~a~a~~ly~~~~~--~~m~l 97 (360)
T KOG0990|consen 32 VEKYRPPFLGIVIKQEPIWSTENRYSGMPGL-----------P-HLLFYGPPGTGKTSTILANARDFYSPHPT--TSMLL 97 (360)
T ss_pred ccCCCCchhhhHhcCCchhhHHHHhccCCCC-----------C-cccccCCCCCCCCCchhhhhhhhcCCCCc--hhHHH
Confidence 4566778899999999999888877543222 2 79999999999999999999988665111 11111
Q ss_pred HHHh--hcchHHH---HHHHHHHHh-------cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCC
Q 006535 403 ELYV--GMGASRV---RDLFARAKK-------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (641)
Q Consensus 403 ~~~v--G~~~~~v---r~lF~~A~~-------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~ 470 (641)
++.. ..+...+ -..|..++. ..+..+++||.|++....+ |+|-+.++.+..+
T Consensus 98 elnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQ---------------nALRRviek~t~n- 161 (360)
T KOG0990|consen 98 ELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQ---------------NALRRVIEKYTAN- 161 (360)
T ss_pred HhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHH---------------HHHHHHHHHhccc-
Confidence 1111 1111111 234544442 2567999999999976544 4444555555544
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHH
Q 006535 471 AVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNE 550 (641)
Q Consensus 471 ~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~e 550 (641)
+.++...|.+..+.|++++ |+. .+.+.+.+...-...+..++........++ -...++. .+-+|++..+|.
T Consensus 162 -~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~-~~~a~~r----~s~gDmr~a~n~ 232 (360)
T KOG0990|consen 162 -TRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPE-GYSALGR----LSVGDMRVALNY 232 (360)
T ss_pred -eEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHH-HHHHHHH----HhHHHHHHHHHH
Confidence 4555678999999999987 664 456777777777778888876544333322 1233333 245677777666
Q ss_pred HHHHH
Q 006535 551 AALLA 555 (641)
Q Consensus 551 Aal~A 555 (641)
....+
T Consensus 233 Lqs~~ 237 (360)
T KOG0990|consen 233 LQSIL 237 (360)
T ss_pred HHHHH
Confidence 54444
No 214
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.76 E-value=1e-07 Score=98.30 Aligned_cols=132 Identities=17% Similarity=0.257 Sum_probs=79.4
Q ss_pred Ccccccccc-CChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHH
Q 006535 327 DTITFADVA-GVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (641)
Q Consensus 327 ~~vtf~DV~-G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~ 402 (641)
...+|++.. +.++.+..+..+..+..+.. ....+++|+|+||||||+|+.++|.++ +..++.++..++.
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~a~~~~~~~~-------~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~ 139 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSKARQYVEEFD-------GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM 139 (244)
T ss_pred cCCccccccCCCchHHHHHHHHHHHHHhhc-------cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH
Confidence 345777764 33343334444444433211 113489999999999999999999987 7888999998888
Q ss_pred HHHhhc---chHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006535 403 ELYVGM---GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 403 ~~~vG~---~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN 479 (641)
..+... ......++++... ..++|+|||++... ..+....++.+++..-- ... -.+|.+||
T Consensus 140 ~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~----------~s~~~~~~l~~Ii~~Ry--~~~--~~tiitSN 203 (244)
T PRK07952 140 SAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT----------ESRYEKVIINQIVDRRS--SSK--RPTGMLTN 203 (244)
T ss_pred HHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC----------CCHHHHHHHHHHHHHHH--hCC--CCEEEeCC
Confidence 754332 1112233444332 46699999997752 12233456666665422 112 24455788
Q ss_pred CC
Q 006535 480 RS 481 (641)
Q Consensus 480 ~p 481 (641)
..
T Consensus 204 l~ 205 (244)
T PRK07952 204 SN 205 (244)
T ss_pred CC
Confidence 64
No 215
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.75 E-value=4.4e-08 Score=112.29 Aligned_cols=191 Identities=14% Similarity=0.112 Sum_probs=130.6
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcC--CCeEEeehhhHHHHHhhcc--hHH--------HHHHHHHHHhcCCceEEEcch
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMG--ASR--------VRDLFARAKKEAPSIIFIDEI 433 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg--~pfi~vs~se~~~~~vG~~--~~~--------vr~lF~~A~~~aP~ILfIDEI 433 (641)
.||||.|++||||++++++++.-+. .||+.+..+--....+|.. +.. -..++..|.. .|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 5899999999999999999999874 5888877655555555543 111 1122333322 39999999
Q ss_pred hhhhhhcCCcccccchhHHHHHHHHHHhhhcCC-----------CCCCcEEEEEecCCC---CCCChhhhCCCCcceEEE
Q 006535 434 DAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNRS---DVLDPALRRPGRFDRVVM 499 (641)
Q Consensus 434 DaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~-----------~~~~~ViVIaATN~p---d~LD~ALlRpgRFd~~I~ 499 (641)
..+. ..+++.|+.-|+.- .-...+++|++.|.. ..|.++++. ||+..|.
T Consensus 103 n~~~---------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~ 165 (584)
T PRK13406 103 ERLE---------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLD 165 (584)
T ss_pred ccCC---------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEE
Confidence 8774 34667777777642 123468888874432 458999999 9999999
Q ss_pred ecCCCHHHHH-------HHHHHHHhcCCCCCCCCCCHHHHHHh--CCCC-CHHHHHHHHHHHHHHHHhcCCccccHHHHH
Q 006535 500 VETPDKIGRE-------AILKVHVSKKELPLAKDIDLGDIASM--TTGF-TGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (641)
Q Consensus 500 v~~Pd~~eR~-------eILk~~l~~~~l~l~~dvdl~~LA~~--T~Gf-SgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 569 (641)
++.|+..+.. +|....-.-.++.+.+++ +..++.. ..|. |.+-...+++-|..+|..+++..|+.+|+.
T Consensus 166 v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~-l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~ 244 (584)
T PRK13406 166 LDGLALRDAREIPIDADDIAAARARLPAVGPPPEA-IAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLA 244 (584)
T ss_pred cCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHH-HHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 9988765422 233332211234444332 3333321 2355 778888899999999999999999999999
Q ss_pred HHHHHHhc
Q 006535 570 HAVERSIA 577 (641)
Q Consensus 570 eAl~rvi~ 577 (641)
+|+.-++.
T Consensus 245 ~Aa~lvL~ 252 (584)
T PRK13406 245 LAARLVLA 252 (584)
T ss_pred HHHHHHHH
Confidence 99987664
No 216
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=2.8e-07 Score=101.03 Aligned_cols=224 Identities=18% Similarity=0.220 Sum_probs=142.4
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEeehhhHHH----
Q 006535 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASEFVE---- 403 (641)
Q Consensus 333 DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-----g~pfi~vs~se~~~---- 403 (641)
.+.|.+..+..+++++..- +....+..+.+.|.||||||.+...+-... ....++++|..+-+
T Consensus 151 ~l~gRe~e~~~v~~F~~~h--------le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ai 222 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLH--------LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAI 222 (529)
T ss_pred CccchHHHHHHHHHHHHhh--------hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHH
Confidence 4778888887777766542 224556789999999999999998776654 22447788764321
Q ss_pred ------HH----hhcch-HHHHHHHHHH-Hhc-CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCC
Q 006535 404 ------LY----VGMGA-SRVRDLFARA-KKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNS 470 (641)
Q Consensus 404 ------~~----vG~~~-~~vr~lF~~A-~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~ 470 (641)
.+ .+.+. ......|..- ... .+-++++||+|.|+...+. ++..+. ++..+ .+.
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~------------vLy~lF-ewp~l-p~s 288 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT------------VLYTLF-EWPKL-PNS 288 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc------------eeeeeh-hcccC-Ccc
Confidence 11 11111 2223333332 222 3669999999999854432 222222 22222 346
Q ss_pred cEEEEEecCCCCCCChhhhC----CCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCH--HHH
Q 006535 471 AVIVLGATNRSDVLDPALRR----PGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTG--ADL 544 (641)
Q Consensus 471 ~ViVIaATN~pd~LD~ALlR----pgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSg--aDL 544 (641)
.+++|+.+|..|.=|..|-| .+--...+.|++++.++..+||...+........-+..+.-.|+...|.|| +.+
T Consensus 289 r~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRka 368 (529)
T KOG2227|consen 289 RIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKA 368 (529)
T ss_pred eeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHH
Confidence 78999999988765655532 222345789999999999999999997643322223346667888888776 556
Q ss_pred HHHHHHHHHHHHhcCC----------------ccccHHHHHHHHHHHhcc
Q 006535 545 ANLVNEAALLAGRLNK----------------VVVEKIDFIHAVERSIAG 578 (641)
Q Consensus 545 ~~Lv~eAal~A~r~~~----------------~~It~~d~~eAl~rvi~g 578 (641)
-.+|+.|..+|....+ ..|..+++..++.++...
T Consensus 369 Ldv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s 418 (529)
T KOG2227|consen 369 LDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGS 418 (529)
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccC
Confidence 6778888888866533 235567777777776544
No 217
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=4.9e-08 Score=105.20 Aligned_cols=134 Identities=22% Similarity=0.258 Sum_probs=95.1
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe-------------------------EEeehhhHH--------------
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------------------------ISCSASEFV-------------- 402 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pf-------------------------i~vs~se~~-------------- 402 (641)
.+.|.++||+||+|+||+++|+++|+.+.+.. +.+......
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 47888999999999999999999998764421 111110000
Q ss_pred --HH------H-hhcchHHHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCC
Q 006535 403 --EL------Y-VGMGASRVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN 469 (641)
Q Consensus 403 --~~------~-vG~~~~~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~ 469 (641)
.. . ..-+...+|++.+.+.. ...-|++||++|.+.. ..-|.||..++ ++.
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLE--EPp 160 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV---------------AAANALLKTLE--EPP 160 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH---------------HHHHHHHHHhc--CCC
Confidence 00 0 01133567776665532 2234999999999853 34488999998 566
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHH
Q 006535 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVH 515 (641)
Q Consensus 470 ~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~ 515 (641)
.++++|.+|+.++.|.|.+++ |. ..+.|++|+.++..+.|...
T Consensus 161 ~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 161 PGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 778899999999999999998 65 48999999998888887653
No 218
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.73 E-value=7.1e-08 Score=95.50 Aligned_cols=184 Identities=27% Similarity=0.348 Sum_probs=93.6
Q ss_pred cCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCC---CeEEeeh-h-h---HHHHH-
Q 006535 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEV---PFISCSA-S-E---FVELY- 405 (641)
Q Consensus 335 ~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~---pfi~vs~-s-e---~~~~~- 405 (641)
+|.++..+.|.+++.. .....++|+||+|+|||+|++.+.....- ..+++.. . . ....+
T Consensus 2 ~gR~~el~~l~~~l~~------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLES------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 4556555555554432 12457999999999999999999998732 1111111 0 0 00000
Q ss_pred ------------h-----------------hcchHHHHHHHHHHHhcC-CceEEEcchhhhh-hhcCCcccccchhHHHH
Q 006535 406 ------------V-----------------GMGASRVRDLFARAKKEA-PSIIFIDEIDAVA-KSRDGRFRIVSNDEREQ 454 (641)
Q Consensus 406 ------------v-----------------G~~~~~vr~lF~~A~~~a-P~ILfIDEIDaL~-~~r~~~~~~~~~~e~~~ 454 (641)
. ......+..+++...... ..||+|||+|.+. ... +...
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~----------~~~~ 139 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE----------EDKD 139 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT----------TTHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc----------chHH
Confidence 0 112344566666665433 4799999999997 211 1133
Q ss_pred HHHHHHhhhcCCCCCCcEE-EEEecCCC---C--CCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCC-CCCC
Q 006535 455 TLNQLLTEMDGFDSNSAVI-VLGATNRS---D--VLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPL-AKDI 527 (641)
Q Consensus 455 ~LnqLL~emd~~~~~~~Vi-VIaATN~p---d--~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l-~~dv 527 (641)
.+..|...++......++. |+++++.. + .-...+. +|+.. +.+++.+.++..++++..+... ..+ .++.
T Consensus 140 ~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~ 215 (234)
T PF01637_consen 140 FLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDE 215 (234)
T ss_dssp HHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC-------HH
T ss_pred HHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHH
Confidence 4455555555433344444 34444321 1 1112222 37766 9999999999999999987654 333 2344
Q ss_pred CHHHHHHhCCCCCHHHHH
Q 006535 528 DLGDIASMTTGFTGADLA 545 (641)
Q Consensus 528 dl~~LA~~T~GfSgaDL~ 545 (641)
+++.+...+.| .|+.|.
T Consensus 216 ~~~~i~~~~gG-~P~~l~ 232 (234)
T PF01637_consen 216 DIEEIYSLTGG-NPRYLQ 232 (234)
T ss_dssp HHHHHHHHHTT--HHHHH
T ss_pred HHHHHHHHhCC-CHHHHh
Confidence 67888888877 455554
No 219
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.73 E-value=3.8e-09 Score=98.27 Aligned_cols=110 Identities=27% Similarity=0.394 Sum_probs=58.4
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehh-hHHH-HHhhcchHHHH-HHHHHHHhcC---CceEEEcchhhhhhhc
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS-EFVE-LYVGMGASRVR-DLFARAKKEA---PSIIFIDEIDAVAKSR 440 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~s-e~~~-~~vG~~~~~vr-~lF~~A~~~a---P~ILfIDEIDaL~~~r 440 (641)
+|||+|+||+|||++|+++|..++..|..|.+. ++.. ...|...-.-. ..|.. ... ..|+++|||....++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~--~~GPif~~ill~DEiNrappkt 78 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEF--RPGPIFTNILLADEINRAPPKT 78 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEE--EE-TT-SSEEEEETGGGS-HHH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEe--ecChhhhceeeecccccCCHHH
Confidence 489999999999999999999999999887663 3322 22222100000 00000 001 1399999998875543
Q ss_pred CCcccccchhHHHHHHHHHHhhhcC---------CCCCCcEEEEEecCCCC-----CCChhhhCCCCcc
Q 006535 441 DGRFRIVSNDEREQTLNQLLTEMDG---------FDSNSAVIVLGATNRSD-----VLDPALRRPGRFD 495 (641)
Q Consensus 441 ~~~~~~~~~~e~~~~LnqLL~emd~---------~~~~~~ViVIaATN~pd-----~LD~ALlRpgRFd 495 (641)
...||+.|.. +.-...+.||||-|+.+ .|+++++. ||-
T Consensus 79 ---------------QsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF~ 130 (131)
T PF07726_consen 79 ---------------QSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RFM 130 (131)
T ss_dssp ---------------HHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TSS
T ss_pred ---------------HHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--ccc
Confidence 3556666542 23345789999999875 78888888 873
No 220
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.72 E-value=3.1e-08 Score=109.05 Aligned_cols=205 Identities=22% Similarity=0.316 Sum_probs=121.4
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHh---
Q 006535 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV--- 406 (641)
Q Consensus 333 DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~~v--- 406 (641)
.++|.......+.+-+..+. .....++++|.+||||+++|+++.... +.||+.++|..+.....
T Consensus 140 ~lig~s~~~~~~~~~i~~~~----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVA----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhcc----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 46677666555544443332 234569999999999999999998654 57999999986533211
Q ss_pred --hcchH-------HHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC-----C----
Q 006535 407 --GMGAS-------RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----S---- 468 (641)
Q Consensus 407 --G~~~~-------~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~-----~---- 468 (641)
|.... ....+|.. ...++|||||||.|....+ ..|+..++.-. .
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ldei~~l~~~~q---------------~~l~~~l~~~~~~~~~~~~~~ 271 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFVE---ADGGTLFLDEIGDISPMMQ---------------VRLLRAIQEREVQRVGSNQTI 271 (441)
T ss_pred hcCCCCCCcCCCCcCCCCceeE---CCCCEEEEeccccCCHHHH---------------HHHHHHHccCcEEeCCCCcee
Confidence 11000 00011222 2356999999999965432 33444333211 1
Q ss_pred CCcEEEEEecCCCCCCChhhhCCCCcce-------EEEecCCCHHHHHH----HHHHHHhc----CCC---CCCCCCCHH
Q 006535 469 NSAVIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA----ILKVHVSK----KEL---PLAKDIDLG 530 (641)
Q Consensus 469 ~~~ViVIaATN~pd~LD~ALlRpgRFd~-------~I~v~~Pd~~eR~e----ILk~~l~~----~~l---~l~~dvdl~ 530 (641)
..++.+|++|+.+- ..+..+|+|.. .+.+..|+..+|.+ ++..++.+ .+. .+.++ .+.
T Consensus 272 ~~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~-a~~ 347 (441)
T PRK10365 272 SVDVRLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQ-AMD 347 (441)
T ss_pred eeceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHH-HHH
Confidence 12567888887641 23334455532 56777888887754 34444332 111 13332 355
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Q 006535 531 DIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAV 572 (641)
Q Consensus 531 ~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl 572 (641)
.|..+...-+.++|+++++.|+..+ ....|+.+++...+
T Consensus 348 ~L~~~~wpgN~reL~~~~~~~~~~~---~~~~i~~~~l~~~~ 386 (441)
T PRK10365 348 LLIHYDWPGNIRELENAVERAVVLL---TGEYISERELPLAI 386 (441)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHhC---CCCccchHhCchhh
Confidence 6666664447799999999988764 44568888876544
No 221
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=2e-07 Score=99.82 Aligned_cols=134 Identities=18% Similarity=0.305 Sum_probs=93.8
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe-------EEe-ehh--------hH--HHHHhh--cchHHHHHHHHHHH
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-------ISC-SAS--------EF--VELYVG--MGASRVRDLFARAK 421 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pf-------i~v-s~s--------e~--~~~~vG--~~~~~vr~lF~~A~ 421 (641)
.+.|.++||+||+|+||+++|+++|+.+-+.- -.+ +|. ++ +....| -+...+|++.+.+.
T Consensus 21 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~ 100 (325)
T PRK06871 21 GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVS 100 (325)
T ss_pred CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHh
Confidence 35678899999999999999999999763210 000 000 11 000011 24567787766654
Q ss_pred h----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceE
Q 006535 422 K----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRV 497 (641)
Q Consensus 422 ~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~ 497 (641)
. +..-|++||++|.+.. ..-|.||..++. +..++++|.+|+.++.|.|.+++ |- ..
T Consensus 101 ~~~~~g~~KV~iI~~a~~m~~---------------~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~~ 160 (325)
T PRK06871 101 QHAQQGGNKVVYIQGAERLTE---------------AAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-QT 160 (325)
T ss_pred hccccCCceEEEEechhhhCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-eE
Confidence 3 2334999999999853 344889999984 55677888888889999999988 53 37
Q ss_pred EEecCCCHHHHHHHHHHH
Q 006535 498 VMVETPDKIGREAILKVH 515 (641)
Q Consensus 498 I~v~~Pd~~eR~eILk~~ 515 (641)
+.+.+|+.++..+.|...
T Consensus 161 ~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 899999998888777765
No 222
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.71 E-value=6e-09 Score=97.53 Aligned_cols=82 Identities=29% Similarity=0.477 Sum_probs=56.6
Q ss_pred cCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC---CCeEEeehhhHHHHHhhcchH
Q 006535 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVELYVGMGAS 411 (641)
Q Consensus 335 ~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg---~pfi~vs~se~~~~~vG~~~~ 411 (641)
+|...+.+++.+-+..+.. ....|||+|++||||+++|++++...+ .+|+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~----------~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----------SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----------SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhC----------CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 4667777777776665432 234699999999999999999998764 477777776532
Q ss_pred HHHHHHHHHHhcCCceEEEcchhhhhhhc
Q 006535 412 RVRDLFARAKKEAPSIIFIDEIDAVAKSR 440 (641)
Q Consensus 412 ~vr~lF~~A~~~aP~ILfIDEIDaL~~~r 440 (641)
.++++.+ ....|||+|+|.|....
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~~~~ 85 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLSPEA 85 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-HHH
T ss_pred --HHHHHHc---CCCEEEECChHHCCHHH
Confidence 3455554 45599999999986543
No 223
>PRK12377 putative replication protein; Provisional
Probab=98.70 E-value=1.1e-07 Score=98.29 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=49.5
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHhhcc--hHHHHHHHHHHHhcCCceEEEcchhhh
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMG--ASRVRDLFARAKKEAPSIIFIDEIDAV 436 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~~vG~~--~~~vr~lF~~A~~~aP~ILfIDEIDaL 436 (641)
..+++|+||||||||+||.|+|+++ +..++.++..+++......- .....++++.. ....+|+|||++..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 3689999999999999999999987 67888888888877543210 00112233322 34569999999654
No 224
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.67 E-value=1.6e-07 Score=99.83 Aligned_cols=132 Identities=23% Similarity=0.306 Sum_probs=76.6
Q ss_pred cccccccCCh-HHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHH
Q 006535 329 ITFADVAGVD-EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL 404 (641)
Q Consensus 329 vtf~DV~G~e-e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~ 404 (641)
.+|+++...+ +....+..+.+++.+. .. ....+|++|+||+|||||+||.|+|+++ |.+...++.++|+..
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~---~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~ 198 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAY---PP--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRE 198 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHh---hc--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHH
Confidence 4566665433 2223333344444322 11 1346799999999999999999999987 788888888887665
Q ss_pred Hhhc-chHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhh-hcCCCCCCcEEEEEecCCC
Q 006535 405 YVGM-GASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE-MDGFDSNSAVIVLGATNRS 481 (641)
Q Consensus 405 ~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~e-md~~~~~~~ViVIaATN~p 481 (641)
.... ....+.+.++... ...+|+|||+..-. ........++..++.. +. .....|.|||.+
T Consensus 199 lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~---------~s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl~ 261 (306)
T PRK08939 199 LKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQ---------MSSWVRDEVLGVILQYRMQ-----EELPTFFTSNFD 261 (306)
T ss_pred HHHHHhcCcHHHHHHHhc--CCCEEEEecCCCcc---------ccHHHHHHHHHHHHHHHHH-----CCCeEEEECCCC
Confidence 4321 1112333444332 34599999996532 1222233455555443 22 123456688865
No 225
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=8.9e-08 Score=103.80 Aligned_cols=97 Identities=37% Similarity=0.616 Sum_probs=68.8
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH-HHhhcch-HHHHHHHHHHH----hcCCceEEEcchhhhhhh
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE-LYVGMGA-SRVRDLFARAK----KEAPSIIFIDEIDAVAKS 439 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~-~~vG~~~-~~vr~lF~~A~----~~aP~ILfIDEIDaL~~~ 439 (641)
.+|||.||+|+|||+||+.+|.-+++||..++|..+.. -|+|+.. ..+..++..|. +....||||||+|.+..+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 36999999999999999999999999999999988865 5788754 34555665542 223459999999999854
Q ss_pred cCCc--ccccchhHHHHHHHHHHhhhcC
Q 006535 440 RDGR--FRIVSNDEREQTLNQLLTEMDG 465 (641)
Q Consensus 440 r~~~--~~~~~~~e~~~~LnqLL~emd~ 465 (641)
..+- ....+. +.+-..||..+++
T Consensus 307 ~~~i~~~RDVsG---EGVQQaLLKllEG 331 (564)
T KOG0745|consen 307 AESIHTSRDVSG---EGVQQALLKLLEG 331 (564)
T ss_pred Cccccccccccc---hhHHHHHHHHhcc
Confidence 4321 011112 3344556666665
No 226
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=2.8e-07 Score=99.17 Aligned_cols=133 Identities=17% Similarity=0.234 Sum_probs=92.5
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-------eEEe-ehhhHH----------HHH---hhcchHHHHHHHHHH
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC-SASEFV----------ELY---VGMGASRVRDLFARA 420 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p-------fi~v-s~se~~----------~~~---vG~~~~~vr~lF~~A 420 (641)
.+.|..+||+||+|+||+++|.++|..+-+. .-.+ +|..+. ... ..-+.+.+|++.+.+
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH
Confidence 4677889999999999999999999976321 1000 010000 000 012345677766655
Q ss_pred Hh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcce
Q 006535 421 KK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDR 496 (641)
Q Consensus 421 ~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~ 496 (641)
.. ...-|++||++|.+.. +.-|.||..++. +..+.++|..|+.++.|.|.+++ |-.
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq- 160 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALLTD---------------AAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR- 160 (334)
T ss_pred hhccccCCceEEEEcchHhhCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-
Confidence 42 3344999999999953 344899999984 55678888899999999999998 543
Q ss_pred EEEecCCCHHHHHHHHHH
Q 006535 497 VVMVETPDKIGREAILKV 514 (641)
Q Consensus 497 ~I~v~~Pd~~eR~eILk~ 514 (641)
.+.+++|+.++..+.|..
T Consensus 161 ~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred cccCCCCCHHHHHHHHHH
Confidence 678999988877777654
No 227
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=98.64 E-value=3.1e-08 Score=100.01 Aligned_cols=59 Identities=41% Similarity=0.472 Sum_probs=48.4
Q ss_pred cHHHHHHHHHHHhcchhhhhccCChhHHHHHHHHHhHHHHHHhHHhhcCCCCCceeeEeeeec
Q 006535 564 EKIDFIHAVERSIAGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWRDS 626 (641)
Q Consensus 564 t~~d~~eAl~rvi~g~~~~~~~l~~~ek~~va~hEaghAlv~~~l~~~~~~~~~v~kiti~~~ 626 (641)
|++||++|+++++.|.+++...+++++++.+|+||+||||+++ ++|..+||++|||.+.
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~----~l~~~~~v~~vsi~pr 59 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAY----LLPPADPVSKVSIVPR 59 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHH----HSSS---EEEEESSTT
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHH----HhcccccEEEEEEecC
Confidence 6799999999999999987788999999999999999999997 7888899999999764
No 228
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=4.6e-07 Score=96.91 Aligned_cols=133 Identities=19% Similarity=0.278 Sum_probs=90.6
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe----EEeehhhHHHH-------H-------hh------cchHHHHHHH
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF----ISCSASEFVEL-------Y-------VG------MGASRVRDLF 417 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pf----i~vs~se~~~~-------~-------vG------~~~~~vr~lF 417 (641)
.+.|..+||+||+|+||+++|.++|..+-+.- -.+.+..++.. + .| -+.+.||++.
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 46677899999999999999999998653210 01111111110 0 01 1345677776
Q ss_pred HHHHhc----CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCC
Q 006535 418 ARAKKE----APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGR 493 (641)
Q Consensus 418 ~~A~~~----aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgR 493 (641)
+.+... .--|++||++|.+.. ...|.||..++. +..++++|..|+.++.|.|.+++ |
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--R 163 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAINR---------------AACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--R 163 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhhCH---------------HHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--h
Confidence 655432 234999999999953 344889999985 34466777788889999999998 6
Q ss_pred cceEEEecCCCHHHHHHHHHH
Q 006535 494 FDRVVMVETPDKIGREAILKV 514 (641)
Q Consensus 494 Fd~~I~v~~Pd~~eR~eILk~ 514 (641)
. ..+.|..|+.++-.+.|..
T Consensus 164 C-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 164 C-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred h-eEeeCCCcCHHHHHHHHHH
Confidence 4 3788999998877776653
No 229
>PRK08181 transposase; Validated
Probab=98.60 E-value=3.3e-07 Score=95.87 Aligned_cols=100 Identities=19% Similarity=0.288 Sum_probs=64.1
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHhhc-chHHHHHHHHHHHhcCCceEEEcchhhhhhhc
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAVAKSR 440 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r 440 (641)
..+++|+||||||||+||.+++.++ |..+++++..+++..+... ........+... ..+.+|+|||++.+..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~-- 181 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTK-- 181 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccC--
Confidence 3579999999999999999999754 7888888998888765321 112233334333 3456999999987532
Q ss_pred CCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC
Q 006535 441 DGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (641)
Q Consensus 441 ~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~p 481 (641)
++.....+-+++..... +. -+|.|||.+
T Consensus 182 --------~~~~~~~Lf~lin~R~~---~~--s~IiTSN~~ 209 (269)
T PRK08181 182 --------DQAETSVLFELISARYE---RR--SILITANQP 209 (269)
T ss_pred --------CHHHHHHHHHHHHHHHh---CC--CEEEEcCCC
Confidence 22223445555554322 22 345577765
No 230
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.56 E-value=1.6e-06 Score=98.42 Aligned_cols=208 Identities=18% Similarity=0.217 Sum_probs=116.9
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEee-hhhHH
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS-ASEFV 402 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs-~se~~ 402 (641)
+...+.+.+||+-...-.++++..++... .+....+-+||+||||||||++++.+|.++|..+..-. ...+.
T Consensus 11 ~ky~P~~~~eLavhkkKv~eV~~wl~~~~-------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~ 83 (519)
T PF03215_consen 11 EKYAPKTLDELAVHKKKVEEVRSWLEEMF-------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFR 83 (519)
T ss_pred hhcCCCCHHHhhccHHHHHHHHHHHHHHh-------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcc
Confidence 45567789999998766666555554311 12333456888999999999999999999987776542 21110
Q ss_pred ------HHHhhcc---------hHHHHHH-HHHHHh-----------cCCceEEEcchhhhhhhcCCcccccchhHHHHH
Q 006535 403 ------ELYVGMG---------ASRVRDL-FARAKK-----------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQT 455 (641)
Q Consensus 403 ------~~~vG~~---------~~~vr~l-F~~A~~-----------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~ 455 (641)
..+.+.. .....++ +..++. ..+.||+|||+-.+... ........
T Consensus 84 ~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~--------~~~~f~~~ 155 (519)
T PF03215_consen 84 ESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR--------DTSRFREA 155 (519)
T ss_pred ccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch--------hHHHHHHH
Confidence 0111100 0111221 111111 23569999998755321 11233344
Q ss_pred HHHHHhhhcCCCCCC-cEEEEEe-c------CCC--------CCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC
Q 006535 456 LNQLLTEMDGFDSNS-AVIVLGA-T------NRS--------DVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK 519 (641)
Q Consensus 456 LnqLL~emd~~~~~~-~ViVIaA-T------N~p--------d~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~ 519 (641)
|.+++.. ... ++|+|.+ + |.. ..+++.++...+. .+|.|.+-...--...|+..+...
T Consensus 156 L~~~l~~-----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E 229 (519)
T PF03215_consen 156 LRQYLRS-----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKE 229 (519)
T ss_pred HHHHHHc-----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHH
Confidence 4444432 122 6676666 1 111 1456777654344 478888777666666665555432
Q ss_pred -----CC-CCCCCCC-HHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 006535 520 -----EL-PLAKDID-LGDIASMTTGFTGADLANLVNEAALLAG 556 (641)
Q Consensus 520 -----~l-~l~~dvd-l~~LA~~T~GfSgaDL~~Lv~eAal~A~ 556 (641)
+. ....... ++.|+..+. +||+.+++.....+.
T Consensus 230 ~~~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 230 ARSSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred hhhhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 11 1121122 667776544 699999998887776
No 231
>PRK06526 transposase; Provisional
Probab=98.54 E-value=2.5e-07 Score=95.90 Aligned_cols=100 Identities=21% Similarity=0.317 Sum_probs=62.4
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHhhc-chHHHHHHHHHHHhcCCceEEEcchhhhhhhc
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAVAKSR 440 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r 440 (641)
+.+++|+||||||||+||.+++.++ |..++.++..++++..... ....+...+... ..+.+|+|||++.+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~~- 174 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPFE- 174 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCCC-
Confidence 4579999999999999999998875 6777777787777654321 111222223222 34679999999876321
Q ss_pred CCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC
Q 006535 441 DGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (641)
Q Consensus 441 ~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~p 481 (641)
......+.+++..... +. .+|.+||.+
T Consensus 175 ---------~~~~~~L~~li~~r~~---~~--s~IitSn~~ 201 (254)
T PRK06526 175 ---------PEAANLFFQLVSSRYE---RA--SLIVTSNKP 201 (254)
T ss_pred ---------HHHHHHHHHHHHHHHh---cC--CEEEEcCCC
Confidence 2223445555554321 22 255577765
No 232
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.54 E-value=6.2e-07 Score=95.50 Aligned_cols=200 Identities=23% Similarity=0.306 Sum_probs=122.8
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH
Q 006535 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (641)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~ 403 (641)
+...|+.+++.....+.+.+-...+ .-+ ...+||.|..||||-++||+..... ..||+.+||..+-+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k~------Aml----DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQKL------AML----DAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHHh------hcc----CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 4567888888887766554433221 111 2249999999999999999987754 68999999976643
Q ss_pred H-----Hhhcc--hHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcC--C-------C
Q 006535 404 L-----YVGMG--ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG--F-------D 467 (641)
Q Consensus 404 ~-----~vG~~--~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~--~-------~ 467 (641)
. ..|.. .+.-..+|+.|... .+|+|||..+.+.-+ ..||..+.. | +
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmSp~lQ---------------aKLLRFL~DGtFRRVGee~E 330 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMSPRLQ---------------AKLLRFLNDGTFRRVGEDHE 330 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcCHHHH---------------HHHHHHhcCCceeecCCcce
Confidence 2 12221 23345678888665 899999988765433 234444332 1 1
Q ss_pred CCCcEEEEEecCCC--CCCChhhhCCC---CcceEEEecCCCHHHHHH--------HHHHHHhcCCCCCC---CCCCHHH
Q 006535 468 SNSAVIVLGATNRS--DVLDPALRRPG---RFDRVVMVETPDKIGREA--------ILKVHVSKKELPLA---KDIDLGD 531 (641)
Q Consensus 468 ~~~~ViVIaATN~p--d~LD~ALlRpg---RFd~~I~v~~Pd~~eR~e--------ILk~~l~~~~l~l~---~dvdl~~ 531 (641)
-.-.|.|||||..+ +.....-.|.. |+. ++.+..|...+|.+ ++..+..+.+++.. ++ -+..
T Consensus 331 v~vdVRVIcatq~nL~~lv~~g~fReDLfyRLN-VLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~-~~~~ 408 (511)
T COG3283 331 VHVDVRVICATQVNLVELVQKGKFREDLFYRLN-VLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAAD-LLTV 408 (511)
T ss_pred EEEEEEEEecccccHHHHHhcCchHHHHHHHhh-eeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHH-HHHH
Confidence 12368999999765 11111111111 222 66778888877753 34444555454432 22 1444
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHHH
Q 006535 532 IASMTTGFTGADLANLVNEAALLAG 556 (641)
Q Consensus 532 LA~~T~GfSgaDL~~Lv~eAal~A~ 556 (641)
+.++-+--+.++|.|++-+|+....
T Consensus 409 L~~y~WpGNVRqL~N~iyRA~s~~E 433 (511)
T COG3283 409 LTRYAWPGNVRQLKNAIYRALTLLE 433 (511)
T ss_pred HHHcCCCccHHHHHHHHHHHHHHhc
Confidence 5555444467999999999987763
No 233
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.54 E-value=9.9e-07 Score=91.34 Aligned_cols=174 Identities=18% Similarity=0.273 Sum_probs=120.8
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCe----------
Q 006535 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPF---------- 393 (641)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pf---------- 393 (641)
.+-+++.+.+.++....|+.+...-. . .++|+|||+|+||-+.+.++.+++ |++=
T Consensus 8 rpksl~~l~~~~e~~~~Lksl~~~~d-----------~-PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~t 75 (351)
T KOG2035|consen 8 RPKSLDELIYHEELANLLKSLSSTGD-----------F-PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTT 75 (351)
T ss_pred CcchhhhcccHHHHHHHHHHhcccCC-----------C-CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEec
Confidence 34567778888888887777664211 1 269999999999999999999876 2211
Q ss_pred ----------------EEeehhhHHHHHhhc-chHHHHHHHHHHHhcCC---------ceEEEcchhhhhhhcCCccccc
Q 006535 394 ----------------ISCSASEFVELYVGM-GASRVRDLFARAKKEAP---------SIIFIDEIDAVAKSRDGRFRIV 447 (641)
Q Consensus 394 ----------------i~vs~se~~~~~vG~-~~~~vr~lF~~A~~~aP---------~ILfIDEIDaL~~~r~~~~~~~ 447 (641)
+.++.++ .|. ..-.+.+++++..+..| .+++|.|.|.|....+
T Consensus 76 pS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ------ 144 (351)
T KOG2035|consen 76 PSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQ------ 144 (351)
T ss_pred CCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHH------
Confidence 1222222 122 22335566666544333 3899999999976544
Q ss_pred chhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCC
Q 006535 448 SNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDI 527 (641)
Q Consensus 448 ~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dv 527 (641)
..|-..|+.+.++ +.+|..+|....+-+++++ |- ..|.++.|+.++...++...+.+.++.++.++
T Consensus 145 ---------~aLRRTMEkYs~~--~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~ 210 (351)
T KOG2035|consen 145 ---------HALRRTMEKYSSN--CRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKEL 210 (351)
T ss_pred ---------HHHHHHHHHHhcC--ceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHH
Confidence 3455566666654 4555567777778888887 42 36889999999999999999999998887664
Q ss_pred CHHHHHHhCCC
Q 006535 528 DLGDIASMTTG 538 (641)
Q Consensus 528 dl~~LA~~T~G 538 (641)
+..||+.+.|
T Consensus 211 -l~rIa~kS~~ 220 (351)
T KOG2035|consen 211 -LKRIAEKSNR 220 (351)
T ss_pred -HHHHHHHhcc
Confidence 7788887654
No 234
>PF13173 AAA_14: AAA domain
Probab=98.52 E-value=5.3e-07 Score=83.34 Aligned_cols=69 Identities=25% Similarity=0.300 Sum_probs=47.6
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcC--CCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhh
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAV 436 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg--~pfi~vs~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL 436 (641)
+.++|+||+|+|||++++.++.... -.++++++.+.......... +.+.+.......+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4589999999999999999998876 77788877765442211110 223333322225679999999887
No 235
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.51 E-value=7.1e-07 Score=95.88 Aligned_cols=69 Identities=23% Similarity=0.424 Sum_probs=49.4
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHhhc---chHHHHHHHHHHHhcCCceEEEcchhhh
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM---GASRVRDLFARAKKEAPSIIFIDEIDAV 436 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~~vG~---~~~~vr~lF~~A~~~aP~ILfIDEIDaL 436 (641)
.+++|+||+|||||+||.|+|.++ |..+++++..+++..+... ........++.. ....+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCC
Confidence 789999999999999999999986 7888999998887755321 111111122222 23459999999664
No 236
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=9.6e-07 Score=94.43 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=91.5
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCC-----------------------CeEEeehhhHHHHHhhcchHHHHHHHH
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----------------------PFISCSASEFVELYVGMGASRVRDLFA 418 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg~-----------------------pfi~vs~se~~~~~vG~~~~~vr~lF~ 418 (641)
.+.|..+||+||.|+||+.+|+++|..+-+ .|+.+....- . ..-+.+.+|++-+
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~--~~I~vdqiR~l~~ 98 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE-G--KSITVEQIRQCNR 98 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC-C--CcCCHHHHHHHHH
Confidence 467788999999999999999999986522 1222211100 0 0013456677655
Q ss_pred HHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCc
Q 006535 419 RAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRF 494 (641)
Q Consensus 419 ~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRF 494 (641)
.+.. ...-|++||++|.+.. ..-|.||..++. +..++++|..|+.++.|.|.+++ |-
T Consensus 99 ~~~~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RC 159 (319)
T PRK06090 99 LAQESSQLNGYRLFVIEPADAMNE---------------SASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RC 159 (319)
T ss_pred HHhhCcccCCceEEEecchhhhCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cc
Confidence 5432 2235999999999853 344889999984 55668888888889999999998 54
Q ss_pred ceEEEecCCCHHHHHHHHHH
Q 006535 495 DRVVMVETPDKIGREAILKV 514 (641)
Q Consensus 495 d~~I~v~~Pd~~eR~eILk~ 514 (641)
..+.+++|+.++..+.|..
T Consensus 160 -q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 160 -QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred -eeEeCCCCCHHHHHHHHHH
Confidence 3789999998887777654
No 237
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.48 E-value=4.3e-07 Score=94.17 Aligned_cols=72 Identities=24% Similarity=0.380 Sum_probs=50.3
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHhhcch-HHHHHHHHHHHhcCCceEEEcchhhh
Q 006535 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGMGA-SRVRDLFARAKKEAPSIIFIDEIDAV 436 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~~vG~~~-~~vr~lF~~A~~~aP~ILfIDEIDaL 436 (641)
.+.+++|+||||||||+||-|+++++ |..++.++..+++...-..-. .....-+.... ....+|+|||+-..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l-~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL-KKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh-hcCCEEEEecccCc
Confidence 45789999999999999999999986 788999999998875432111 11111122211 23459999999664
No 238
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1e-06 Score=104.13 Aligned_cols=126 Identities=33% Similarity=0.399 Sum_probs=91.7
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCC-CCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHH----
Q 006535 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGA-RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL---- 404 (641)
Q Consensus 333 DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~-~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~---- 404 (641)
.|+|++++...+.+.+..-+.. ++. .++..+||.||.|+|||-||+|+|..+ .-.|+.+++++|.+.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~g-----l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAG-----LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcc-----cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 5999999999888888764431 111 356779999999999999999999976 467899999987661
Q ss_pred -----HhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCC---------CC
Q 006535 405 -----YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS---------NS 470 (641)
Q Consensus 405 -----~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~---------~~ 470 (641)
|+| ....-.+.+..+....+||+|||||... ..+++.|++.+|...- -.
T Consensus 638 gsp~gyvG--~e~gg~LteavrrrP~sVVLfdeIEkAh---------------~~v~n~llq~lD~GrltDs~Gr~Vd~k 700 (898)
T KOG1051|consen 638 GSPPGYVG--KEEGGQLTEAVKRRPYSVVLFEEIEKAH---------------PDVLNILLQLLDRGRLTDSHGREVDFK 700 (898)
T ss_pred CCCccccc--chhHHHHHHHHhcCCceEEEEechhhcC---------------HHHHHHHHHHHhcCccccCCCcEeecc
Confidence 222 2334456666677777899999998753 2355767777765422 24
Q ss_pred cEEEEEecCC
Q 006535 471 AVIVLGATNR 480 (641)
Q Consensus 471 ~ViVIaATN~ 480 (641)
++|||+|+|.
T Consensus 701 N~I~IMTsn~ 710 (898)
T KOG1051|consen 701 NAIFIMTSNV 710 (898)
T ss_pred ceEEEEeccc
Confidence 6899999886
No 239
>PRK09183 transposase/IS protein; Provisional
Probab=98.46 E-value=3.3e-07 Score=95.23 Aligned_cols=72 Identities=28% Similarity=0.384 Sum_probs=50.9
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHhhc-chHHHHHHHHHHHhcCCceEEEcchhhh
Q 006535 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDAV 436 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDaL 436 (641)
...+++|+||||||||+||.+++.++ |..+.++++.++...+... ....+...+... ...+++++|||++.+
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 34579999999999999999997764 7778888888777543221 112244455443 245679999999765
No 240
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.45 E-value=7e-07 Score=81.44 Aligned_cols=98 Identities=26% Similarity=0.362 Sum_probs=58.0
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhc--------CCCeEEeehhhHHH------H----Hh----h-cchHHHHHHHHHHH
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEA--------EVPFISCSASEFVE------L----YV----G-MGASRVRDLFARAK 421 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el--------g~pfi~vs~se~~~------~----~v----G-~~~~~vr~lF~~A~ 421 (641)
.+.++++||||+|||++++.++.+. +.+++.+++..... . +. . .....+.+.+....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3568999999999999999999987 78888887754431 1 00 0 12233334444433
Q ss_pred -hcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEec
Q 006535 422 -KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (641)
Q Consensus 422 -~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaAT 478 (641)
.....+|+|||+|.+. + ...++.|...++ ...-.++++++.
T Consensus 84 ~~~~~~~lviDe~~~l~-~-------------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S-------------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T-------------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-C-------------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 3333499999999984 1 345566655555 233344554443
No 241
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.44 E-value=2e-07 Score=91.66 Aligned_cols=70 Identities=29% Similarity=0.441 Sum_probs=48.5
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHhhc-chHHHHHHHHHHHhcCCceEEEcchhh
Q 006535 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYVGM-GASRVRDLFARAKKEAPSIIFIDEIDA 435 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~~vG~-~~~~vr~lF~~A~~~aP~ILfIDEIDa 435 (641)
.+.+++|+||||||||+||.+++.++ |.+...++.+++++..... ......+.++... .+.+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 45689999999999999999999875 8889999999998865432 1122333444333 345999999853
No 242
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=1.3e-06 Score=93.78 Aligned_cols=132 Identities=21% Similarity=0.290 Sum_probs=89.5
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCC-------------------------CeEEeehhhHHHHHhh-----cchH
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------------------------PFISCSASEFVELYVG-----MGAS 411 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg~-------------------------pfi~vs~se~~~~~vG-----~~~~ 411 (641)
.+.|..+||+||+|+|||++|+++|+.+.+ .|+.++...-. ...| -+.+
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id 96 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKID 96 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHH
Confidence 377889999999999999999999997632 12222221000 0001 1356
Q ss_pred HHHHHHHHHHh----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChh
Q 006535 412 RVRDLFARAKK----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPA 487 (641)
Q Consensus 412 ~vr~lF~~A~~----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~A 487 (641)
.+|++.+.+.. ....|++||++|.+... ..+.|+..++... .++.+|.+|+.++.+.+.
T Consensus 97 ~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~---------------a~naLLk~LEep~--~~~~~Ilvth~~~~ll~t 159 (325)
T PRK08699 97 AVREIIDNVYLTSVRGGLRVILIHPAESMNLQ---------------AANSLLKVLEEPP--PQVVFLLVSHAADKVLPT 159 (325)
T ss_pred HHHHHHHHHhhCcccCCceEEEEechhhCCHH---------------HHHHHHHHHHhCc--CCCEEEEEeCChHhChHH
Confidence 77887777653 22349999999988533 3366777777654 335566688888889999
Q ss_pred hhCCCCcceEEEecCCCHHHHHHHHHH
Q 006535 488 LRRPGRFDRVVMVETPDKIGREAILKV 514 (641)
Q Consensus 488 LlRpgRFd~~I~v~~Pd~~eR~eILk~ 514 (641)
+.+ |. ..+.|++|+.++..+.|..
T Consensus 160 i~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 160 IKS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 887 43 4788999998887777654
No 243
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.41 E-value=3e-06 Score=88.75 Aligned_cols=138 Identities=20% Similarity=0.331 Sum_probs=77.1
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCC-C--eEEeehhhHHHHHhhcchHHHHHHHHHH-----------HhcCCceEEE
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV-P--FISCSASEFVELYVGMGASRVRDLFARA-----------KKEAPSIIFI 430 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elg~-p--fi~vs~se~~~~~vG~~~~~vr~lF~~A-----------~~~aP~ILfI 430 (641)
.+++||+||+|||||.+++.+-.++.- . ...++++... +...+..+.+.. ..+..+|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 357999999999999999988776542 2 2233333211 112222222211 1123459999
Q ss_pred cchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCC-------CcEEEEEecCCC---CCCChhhhCCCCcceEEEe
Q 006535 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN-------SAVIVLGATNRS---DVLDPALRRPGRFDRVVMV 500 (641)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~-------~~ViVIaATN~p---d~LD~ALlRpgRFd~~I~v 500 (641)
||+..-..+.- +....-+.|.|++..-.-++.. .++.+|||++.+ ..+++.++| .|. .+.+
T Consensus 107 DDlN~p~~d~y------gtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i~~~ 177 (272)
T PF12775_consen 107 DDLNMPQPDKY------GTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-ILNI 177 (272)
T ss_dssp ETTT-S---TT------S--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-EEE-
T ss_pred cccCCCCCCCC------CCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-EEEe
Confidence 99987544331 2222334555555542222221 368888998864 247888888 664 8899
Q ss_pred cCCCHHHHHHHHHHHHh
Q 006535 501 ETPDKIGREAILKVHVS 517 (641)
Q Consensus 501 ~~Pd~~eR~eILk~~l~ 517 (641)
+.|+.+....|+...+.
T Consensus 178 ~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 178 PYPSDESLNTIFSSILQ 194 (272)
T ss_dssp ---TCCHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHh
Confidence 99999988888777665
No 244
>PRK06921 hypothetical protein; Provisional
Probab=98.40 E-value=2.9e-06 Score=88.66 Aligned_cols=69 Identities=26% Similarity=0.330 Sum_probs=47.4
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhc----CCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhh
Q 006535 364 PPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDA 435 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el----g~pfi~vs~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDa 435 (641)
...+++|+||||||||+|+.|+|+++ +..+++++..+++...... .......++.. ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 35689999999999999999999975 6777888877766543221 11122222222 2356999999944
No 245
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.31 E-value=5.9e-06 Score=94.00 Aligned_cols=198 Identities=27% Similarity=0.277 Sum_probs=100.4
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHH-----HHHHHHHHH---hcCCceEEEcchhh
Q 006535 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASR-----VRDLFARAK---KEAPSIIFIDEIDA 435 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~vG~~~~~-----vr~lF~~A~---~~aP~ILfIDEIDa 435 (641)
.--+|||+|.||||||.+.+.+++-+..-.+ .++.. +.-+|.++.. -+++.-+.- ...-.|.+|||+|.
T Consensus 461 ~~INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkG--sSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDK 537 (804)
T KOG0478|consen 461 GDINILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKG--SSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDK 537 (804)
T ss_pred ccceEEEecCCCcCHHHHHHHHHHhCCccee-ecCCc--cchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhh
Confidence 3467999999999999999999987643322 12210 0001111100 011111110 01234888999999
Q ss_pred hhhhcCCcccccchhHHHH-HHHHHHhh-hcCCCCCCcEEEEEecCCCC-------------CCChhhhCCCCcceEE-E
Q 006535 436 VAKSRDGRFRIVSNDEREQ-TLNQLLTE-MDGFDSNSAVIVLGATNRSD-------------VLDPALRRPGRFDRVV-M 499 (641)
Q Consensus 436 L~~~r~~~~~~~~~~e~~~-~LnqLL~e-md~~~~~~~ViVIaATN~pd-------------~LD~ALlRpgRFd~~I-~ 499 (641)
+..+.. ...++..+| +++--..- +. .-+...-|+|+.|+.+ .|+|.|++ |||.++ -
T Consensus 538 M~dStr----SvLhEvMEQQTvSIAKAGII~--sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIyll 609 (804)
T KOG0478|consen 538 MSDSTR----SVLHEVMEQQTLSIAKAGIIA--SLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLL 609 (804)
T ss_pred hhHHHH----HHHHHHHHHhhhhHhhcceee--eccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEE
Confidence 953321 112222221 11100000 11 1133457889998531 57899999 999775 4
Q ss_pred ecCCCHHHHHHHHHH----HHhc----------------------C-CCC-CCCCCCHHHHHH-----hC----CC---C
Q 006535 500 VETPDKIGREAILKV----HVSK----------------------K-ELP-LAKDIDLGDIAS-----MT----TG---F 539 (641)
Q Consensus 500 v~~Pd~~eR~eILk~----~l~~----------------------~-~l~-l~~dvdl~~LA~-----~T----~G---f 539 (641)
++.||...-+.|-.+ |... + ..+ +.++. ...+.+ +. .| -
T Consensus 610 lD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea-~~~l~~ayvd~rk~~~~~~~ita 688 (804)
T KOG0478|consen 610 LDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEA-SQALIQAYVDMRKIGEGAGQITA 688 (804)
T ss_pred ecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHhccCCccccHHH-HHHHHHHhhhhhhhcccccccch
Confidence 578877622222222 2110 0 001 11111 111100 00 11 2
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 006535 540 TGADLANLVNEAALLAGRLNKVVVEKIDFIHAVE 573 (641)
Q Consensus 540 SgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~ 573 (641)
++++++.|++.+...|..+....+...|+++|+.
T Consensus 689 t~rQlesLiRlsEahak~r~s~~ve~~dV~eA~~ 722 (804)
T KOG0478|consen 689 TPRQLESLIRLSEAHAKMRLSNRVEEIDVEEAVR 722 (804)
T ss_pred hHHHHHHHHHHHHHHHHhhcccccchhhHHHHHH
Confidence 4577788877777777777777888888888765
No 246
>PF05729 NACHT: NACHT domain
Probab=98.30 E-value=7.5e-06 Score=76.93 Aligned_cols=141 Identities=16% Similarity=0.259 Sum_probs=73.4
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcC--------CC-eEEeehhhHHHH------------HhhcchHHHHHHH-HHHHhcC
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEAE--------VP-FISCSASEFVEL------------YVGMGASRVRDLF-ARAKKEA 424 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg--------~p-fi~vs~se~~~~------------~vG~~~~~vr~lF-~~A~~~a 424 (641)
-++|+|+||+|||++++.++..+. .+ .+.+.+.+.... ........+...+ ..+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999997641 12 223333322211 1111111122212 2233455
Q ss_pred CceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCC
Q 006535 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPD 504 (641)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd 504 (641)
+.+|+||.+|.+....+. .........+.+++.. ....+..++|.+.+.....+...+.. ...+.+...+
T Consensus 82 ~~llilDglDE~~~~~~~----~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~~ 151 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS----QERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPFS 151 (166)
T ss_pred ceEEEEechHhcccchhh----hHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCCC
Confidence 679999999999753321 0111122333333332 11222333333222221122222222 1478899999
Q ss_pred HHHHHHHHHHHHh
Q 006535 505 KIGREAILKVHVS 517 (641)
Q Consensus 505 ~~eR~eILk~~l~ 517 (641)
.+++.++++.+++
T Consensus 152 ~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 152 EEDIKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998875
No 247
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.29 E-value=7.7e-07 Score=100.77 Aligned_cols=205 Identities=23% Similarity=0.321 Sum_probs=122.0
Q ss_pred cCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc--CCCeEEeehhhHHHH-----Hhh
Q 006535 335 AGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA--EVPFISCSASEFVEL-----YVG 407 (641)
Q Consensus 335 ~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el--g~pfi~vs~se~~~~-----~vG 407 (641)
++.+...+.+..-+..+... .-.+||.|.|||||-.||+++.... .-||+.++|...-+. +.|
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~----------~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFG 385 (606)
T COG3284 316 PLLDPSRATLLRKAERVAAT----------DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFG 385 (606)
T ss_pred cccCHHHHHHHHHHHHHhhc----------CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhc
Confidence 45555555554444433221 2359999999999999999998765 579999999755432 222
Q ss_pred cch--------HHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhc--------CCCCCCc
Q 006535 408 MGA--------SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD--------GFDSNSA 471 (641)
Q Consensus 408 ~~~--------~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd--------~~~~~~~ 471 (641)
..+ +--+..+++|..+ .+|+|||..+.-.-+ ..||..+. +-...-.
T Consensus 386 y~~GafTga~~kG~~g~~~~A~gG---tlFldeIgd~p~~~Q---------------s~LLrVl~e~~v~p~g~~~~~vd 447 (606)
T COG3284 386 YVAGAFTGARRKGYKGKLEQADGG---TLFLDEIGDMPLALQ---------------SRLLRVLQEGVVTPLGGTRIKVD 447 (606)
T ss_pred cCccccccchhccccccceecCCC---ccHHHHhhhchHHHH---------------HHHHHHHhhCceeccCCcceeEE
Confidence 211 1122233333333 899999988753322 33343332 2233346
Q ss_pred EEEEEecCCCCCCChhhhCCCCcce-------EEEecCCCHHHHHH---HHHHHHhcC---CCCCCCCCCHHHHHHhCCC
Q 006535 472 VIVLGATNRSDVLDPALRRPGRFDR-------VVMVETPDKIGREA---ILKVHVSKK---ELPLAKDIDLGDIASMTTG 538 (641)
Q Consensus 472 ViVIaATN~pd~LD~ALlRpgRFd~-------~I~v~~Pd~~eR~e---ILk~~l~~~---~l~l~~dvdl~~LA~~T~G 538 (641)
|.||+||+++ -..|.+-|||-+ .+.+.+|...+|.+ .|..++.+. .+.++++. +..|-.+-.-
T Consensus 448 irvi~ath~d---l~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~-~~~l~~~~WP 523 (606)
T COG3284 448 IRVIAATHRD---LAQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDA-LARLLAYRWP 523 (606)
T ss_pred EEEEeccCcC---HHHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHH-HHHHHhCCCC
Confidence 8999999986 345667788753 34566788777764 444444432 23344332 3334333333
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 006535 539 FTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (641)
Q Consensus 539 fSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~r 574 (641)
-+-++|.+++..++..+ +...|...|+...+-.
T Consensus 524 GNirel~~v~~~~~~l~---~~g~~~~~dlp~~l~~ 556 (606)
T COG3284 524 GNIRELDNVIERLAALS---DGGRIRVSDLPPELLE 556 (606)
T ss_pred CcHHHHHHHHHHHHHcC---CCCeeEcccCCHHHHh
Confidence 37799999999888776 4445555555555543
No 248
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.27 E-value=5.6e-06 Score=77.08 Aligned_cols=109 Identities=20% Similarity=0.220 Sum_probs=62.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHh----------------------hc--chHHHHHHHHHH
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV----------------------GM--GASRVRDLFARA 420 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~~v----------------------G~--~~~~vr~lF~~A 420 (641)
++|+||||+|||+++..++..+ +.+.+.++......... .. .....+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 56666666543322110 00 011111234455
Q ss_pred HhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC
Q 006535 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (641)
Q Consensus 421 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~p 481 (641)
....|.+|+|||+..+....... .........+.+..++..+. ..++.+|++++..
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~ 137 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREI-REGYPGELDEELRELLERAR----KGGVTVIFTLQVP 137 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHh----cCCceEEEEEecC
Confidence 56778899999999987543210 01122233444555555443 2345555555544
No 249
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.26 E-value=4e-06 Score=94.71 Aligned_cols=223 Identities=21% Similarity=0.206 Sum_probs=128.3
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHh--hhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhh
Q 006535 330 TFADVAGVDEAKEELEEIVEFLRSPDKYI--RLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (641)
Q Consensus 330 tf~DV~G~ee~K~~L~eiv~~L~~p~~~~--~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~vG 407 (641)
-|..|.|.+.+|.-+.=.+ +-.-.++. ....+---+|+|+|.|||||+-+.+++++-+-.-.+. ++.. +.-.|
T Consensus 343 l~PsIyGhe~VK~GilL~L--fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYt-sGka--SSaAG 417 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSL--FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYT-SGKA--SSAAG 417 (764)
T ss_pred hCccccchHHHHhhHHHHH--hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEe-cCcc--ccccc
Confidence 3567999999997654222 21111211 1223444679999999999999999999876444332 2210 00011
Q ss_pred cchHHHHHH--HH---HHHh---cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCC-----------C
Q 006535 408 MGASRVRDL--FA---RAKK---EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD-----------S 468 (641)
Q Consensus 408 ~~~~~vr~l--F~---~A~~---~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~-----------~ 468 (641)
.++..+++- ++ +|-+ ....|-.|||+|.+..+.+ ..++..|+... -
T Consensus 418 LTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dq---------------vAihEAMEQQtISIaKAGv~aTL 482 (764)
T KOG0480|consen 418 LTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQ---------------VAIHEAMEQQTISIAKAGVVATL 482 (764)
T ss_pred ceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhH---------------HHHHHHHHhheehheecceEEee
Confidence 111111110 00 0100 1124889999999864332 23444444211 1
Q ss_pred CCcEEEEEecCCCC-------------CCChhhhCCCCcceEE-EecCCCHHHHHHHHHHHHhcCCCCCCCCC------C
Q 006535 469 NSAVIVLGATNRSD-------------VLDPALRRPGRFDRVV-MVETPDKIGREAILKVHVSKKELPLAKDI------D 528 (641)
Q Consensus 469 ~~~ViVIaATN~pd-------------~LD~ALlRpgRFd~~I-~v~~Pd~~eR~eILk~~l~~~~l~l~~dv------d 528 (641)
+.+--||||+|+.. .+++++++ |||..+ -++.|++..-..|-++.+.... .+++.+ .
T Consensus 483 nARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~-~i~~~~~~~~~~~ 559 (764)
T KOG0480|consen 483 NARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHR-GIDDATERVCVYT 559 (764)
T ss_pred cchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhc-ccccccccccccc
Confidence 23446888998742 56889999 999764 5578887655554444332210 000000 0
Q ss_pred -----------------------------HHHHH--------HhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 006535 529 -----------------------------LGDIA--------SMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (641)
Q Consensus 529 -----------------------------l~~LA--------~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eA 571 (641)
...+- +.+.+.|.++|+.+++-+-.+|...-...||.+|+++|
T Consensus 560 ~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea 639 (764)
T KOG0480|consen 560 LEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEA 639 (764)
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHH
Confidence 00110 11336788999999999988898888899999999999
Q ss_pred HHHH
Q 006535 572 VERS 575 (641)
Q Consensus 572 l~rv 575 (641)
++-.
T Consensus 640 ~eLl 643 (764)
T KOG0480|consen 640 VELL 643 (764)
T ss_pred HHHH
Confidence 8753
No 250
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.26 E-value=2.5e-06 Score=98.73 Aligned_cols=222 Identities=26% Similarity=0.285 Sum_probs=127.1
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhC--CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEE-eehhhHHHHHhhc
Q 006535 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLG--ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-CSASEFVELYVGM 408 (641)
Q Consensus 332 ~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg--~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~-vs~se~~~~~vG~ 408 (641)
-.|.|++++|+.+.=. .+--..+...-| .+---+|||.|.||||||.|.|.+++-+-.-.+. -.++. -+|.
T Consensus 286 PsIyG~e~VKkAilLq--LfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss----~~GL 359 (682)
T COG1241 286 PSIYGHEDVKKAILLQ--LFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSS----AAGL 359 (682)
T ss_pred ccccCcHHHHHHHHHH--hcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEcccccc----ccCc
Confidence 3588999988765422 222221111111 2233579999999999999999999876443332 11111 1233
Q ss_pred chHHHHHHH--H---HHH---hcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC-----------CCC
Q 006535 409 GASRVRDLF--A---RAK---KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF-----------DSN 469 (641)
Q Consensus 409 ~~~~vr~lF--~---~A~---~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~-----------~~~ 469 (641)
++..+++-+ + +|- ...+.|.+|||+|.+.... -+.+...|+.. .-+
T Consensus 360 TAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~d---------------r~aihEaMEQQtIsIaKAGI~atLn 424 (682)
T COG1241 360 TAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEED---------------RVAIHEAMEQQTISIAKAGITATLN 424 (682)
T ss_pred eeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHH---------------HHHHHHHHHhcEeeecccceeeecc
Confidence 333333322 1 110 1225599999999874221 13344444422 112
Q ss_pred CcEEEEEecCCCC-------------CCChhhhCCCCcceEEEe-cCCCHHHHHH----HHHHHHhc-------------
Q 006535 470 SAVIVLGATNRSD-------------VLDPALRRPGRFDRVVMV-ETPDKIGREA----ILKVHVSK------------- 518 (641)
Q Consensus 470 ~~ViVIaATN~pd-------------~LD~ALlRpgRFd~~I~v-~~Pd~~eR~e----ILk~~l~~------------- 518 (641)
...-|+||+|+.. .|++.|++ |||..+.+ +.||.+.-+. ++..|...
T Consensus 425 ARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~ 502 (682)
T COG1241 425 ARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDE 502 (682)
T ss_pred hhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccc
Confidence 3456788888753 57888999 99987655 5676643332 34444210
Q ss_pred -----------------CCC-CCCCCCCHHHHHH-----h----------CCCCCHHHHHHHHHHHHHHHHhcCCccccH
Q 006535 519 -----------------KEL-PLAKDIDLGDIAS-----M----------TTGFTGADLANLVNEAALLAGRLNKVVVEK 565 (641)
Q Consensus 519 -----------------~~l-~l~~dvdl~~LA~-----~----------T~GfSgaDL~~Lv~eAal~A~r~~~~~It~ 565 (641)
..+ |.-.+...+.|.. + +-..|.++|+.+++-|-..|..+-+..|+.
T Consensus 503 ~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~ 582 (682)
T COG1241 503 VEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEE 582 (682)
T ss_pred cccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCH
Confidence 001 1111101111111 1 123578999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 006535 566 IDFIHAVERSI 576 (641)
Q Consensus 566 ~d~~eAl~rvi 576 (641)
+|+++|++-+.
T Consensus 583 eD~~eAi~lv~ 593 (682)
T COG1241 583 EDVDEAIRLVD 593 (682)
T ss_pred HHHHHHHHHHH
Confidence 99999997654
No 251
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.24 E-value=3.7e-05 Score=86.06 Aligned_cols=211 Identities=15% Similarity=0.186 Sum_probs=108.2
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehh----
Q 006535 324 EQGDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS---- 399 (641)
Q Consensus 324 ~~~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~s---- 399 (641)
++..+-+.++|+-+..-..++++ ||+.-..+ ...-..+-+||+||+|||||+.++.++.++|+.++.-+..
T Consensus 74 eKy~P~t~eeLAVHkkKI~eVk~---WL~~~~~~--~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~ 148 (634)
T KOG1970|consen 74 EKYKPRTLEELAVHKKKISEVKQ---WLKQVAEF--TPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLK 148 (634)
T ss_pred HhcCcccHHHHhhhHHhHHHHHH---HHHHHHHh--ccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCcccc
Confidence 44455667777766544333333 33300000 0011234588999999999999999999999877765411
Q ss_pred ---------hHHHHHhhcchHHHHHHHHHHHh------------cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHH
Q 006535 400 ---------EFVELYVGMGASRVRDLFARAKK------------EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ 458 (641)
Q Consensus 400 ---------e~~~~~vG~~~~~vr~lF~~A~~------------~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Lnq 458 (641)
.+...+...--.........+.+ ..+.+|+|||+-...... ....+..
T Consensus 149 ~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d-----------~~~~f~e 217 (634)
T KOG1970|consen 149 EPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD-----------DSETFRE 217 (634)
T ss_pred ccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh-----------hHHHHHH
Confidence 11110111111111222222211 235689999987664321 1223333
Q ss_pred HHhhhcCCCCCCcEEEEEecCCCCCCChhhhCC------CCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCC-----CC
Q 006535 459 LLTEMDGFDSNSAVIVLGATNRSDVLDPALRRP------GRFDRVVMVETPDKIGREAILKVHVSKKELPLAK-----DI 527 (641)
Q Consensus 459 LL~emd~~~~~~~ViVIaATN~pd~LD~ALlRp------gRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~-----dv 527 (641)
+|.+.-......-|++|.-.+.++..++..+.+ .|.+ .|.|.+-...--...|+..+.....+... ..
T Consensus 218 vL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~ 296 (634)
T KOG1970|consen 218 VLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTA 296 (634)
T ss_pred HHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhH
Confidence 333332222222233333333334333333221 2443 67777766666666777766654444432 22
Q ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 006535 528 DLGDIASMTTGFTGADLANLVNEAALLA 555 (641)
Q Consensus 528 dl~~LA~~T~GfSgaDL~~Lv~eAal~A 555 (641)
.++.++.. +++||+.+++...+.+
T Consensus 297 ~v~~i~~~----s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 297 EVELICQG----SGGDIRSAINSLQLSS 320 (634)
T ss_pred HHHHHHHh----cCccHHHHHhHhhhhc
Confidence 33444433 5679999999888775
No 252
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.24 E-value=5.3e-06 Score=90.28 Aligned_cols=103 Identities=20% Similarity=0.297 Sum_probs=61.4
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCC-CeEEeehhhHHHHHhh------cchHHHHHHHHHHHhcCCceEEEcchh
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-PFISCSASEFVELYVG------MGASRVRDLFARAKKEAPSIIFIDEID 434 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg~-pfi~vs~se~~~~~vG------~~~~~vr~lF~~A~~~aP~ILfIDEID 434 (641)
...|+|++||||+|+|||+|.-.+...+.. .-..+.-.+|+..... .....+..+-+..... ..+|+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~-~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKE-SRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhc-CCEEEEeeee
Confidence 457999999999999999999999887643 1112222233221110 1122233333333333 3399999986
Q ss_pred hhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC
Q 006535 435 AVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (641)
Q Consensus 435 aL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~p 481 (641)
--. -.....+..|+..+- ..++++|+|+|++
T Consensus 138 V~D------------iaDAmil~rLf~~l~----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VTD------------IADAMILKRLFEALF----KRGVVLVATSNRP 168 (362)
T ss_pred ccc------------hhHHHHHHHHHHHHH----HCCCEEEecCCCC
Confidence 421 111345555666553 4678999999986
No 253
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.22 E-value=2.9e-06 Score=93.63 Aligned_cols=231 Identities=23% Similarity=0.208 Sum_probs=129.5
Q ss_pred ccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEee-hhhHHHHHhhcch
Q 006535 332 ADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS-ASEFVELYVGMGA 410 (641)
Q Consensus 332 ~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs-~se~~~~~vG~~~ 410 (641)
-+|.|++++|+.|.-++----+...-.-+..+-.-+|+|.|.||+.|+-|.+.+.+-+-...+..- ++ .-+|.++
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS----SGVGLTA 417 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS----SGVGLTA 417 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC----Cccccch
Confidence 369999999998866554322211111222344467999999999999999999887644333321 11 1133333
Q ss_pred HHHHHHH-----------HHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006535 411 SRVRDLF-----------ARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 411 ~~vr~lF-----------~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN 479 (641)
..+++-. -.|. ..|.+|||+|.+.... ...-++..+|.--.+-..--.-.-+.+.-|+||.|
T Consensus 418 AVmkDpvTgEM~LEGGALVLAD---~GICCIDEfDKM~e~D----RtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAAN 490 (721)
T KOG0482|consen 418 AVMKDPVTGEMVLEGGALVLAD---GGICCIDEFDKMDESD----RTAIHEVMEQQTISIAKAGINTTLNARTSILAAAN 490 (721)
T ss_pred hhhcCCCCCeeEeccceEEEcc---CceEeehhhhhhhhhh----hHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcC
Confidence 3332211 1111 2388999999986432 12233333332222211100011234567788888
Q ss_pred CCC-------------CCChhhhCCCCcceEEEe-cCCCHHHHHHHHHH----HHhcCCCCCC-CCCCHH----------
Q 006535 480 RSD-------------VLDPALRRPGRFDRVVMV-ETPDKIGREAILKV----HVSKKELPLA-KDIDLG---------- 530 (641)
Q Consensus 480 ~pd-------------~LD~ALlRpgRFd~~I~v-~~Pd~~eR~eILk~----~l~~~~l~l~-~dvdl~---------- 530 (641)
+.. .|+.||++ |||...-+ +.||.+.-..+-++ |...+.-++. +.++.+
T Consensus 491 PayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak 568 (721)
T KOG0482|consen 491 PAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAK 568 (721)
T ss_pred ccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHh
Confidence 631 67999999 99975543 67776554443332 2211111100 001111
Q ss_pred ------------HH----------HH--hCC-CCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHH
Q 006535 531 ------------DI----------AS--MTT-GFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERS 575 (641)
Q Consensus 531 ------------~L----------A~--~T~-GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~rv 575 (641)
.| ++ ... -.|++.|-.+++-+..+|..+-...|..+|+++|++-.
T Consensus 569 ~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLm 638 (721)
T KOG0482|consen 569 RKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLM 638 (721)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 11 10 111 23678899999999889988888999999999999643
No 254
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.21 E-value=1.7e-05 Score=98.31 Aligned_cols=179 Identities=19% Similarity=0.284 Sum_probs=100.3
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe---EEeehh---h
Q 006535 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF---ISCSAS---E 400 (641)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pf---i~vs~s---e 400 (641)
+...+++++|.++..+++.+++.. .....+-|-|+||+|+|||+||+++++.....| +.++.. .
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 345688999999988888776642 223345688999999999999999988764433 111110 0
Q ss_pred HHHHHh-----------hcchHHHH-------------HHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHH
Q 006535 401 FVELYV-----------GMGASRVR-------------DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTL 456 (641)
Q Consensus 401 ~~~~~v-----------G~~~~~vr-------------~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~L 456 (641)
....+. ......+. ..........+.+|++||+|.. ..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-----------------~~l 311 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-----------------DVL 311 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-----------------HHH
Confidence 000000 00000001 1122223355678999998642 123
Q ss_pred HHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCC-C-HHHHHH
Q 006535 457 NQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDI-D-LGDIAS 534 (641)
Q Consensus 457 nqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dv-d-l~~LA~ 534 (641)
..+....+.+.. +-.||.||.. ..+++....++.+.++.|+.++..+++..++-+...+. ++. + ..++++
T Consensus 312 ~~L~~~~~~~~~--GsrIIiTTrd-----~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~~iv~ 383 (1153)
T PLN03210 312 DALAGQTQWFGS--GSRIIVITKD-----KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELASEVAL 383 (1153)
T ss_pred HHHHhhCccCCC--CcEEEEEeCc-----HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHH
Confidence 333333333322 2344446653 34443335678899999999999999998875432221 110 1 234566
Q ss_pred hCCCCC
Q 006535 535 MTTGFT 540 (641)
Q Consensus 535 ~T~GfS 540 (641)
++.|..
T Consensus 384 ~c~GLP 389 (1153)
T PLN03210 384 RAGNLP 389 (1153)
T ss_pred HhCCCc
Confidence 666654
No 255
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.15 E-value=1.3e-06 Score=93.98 Aligned_cols=190 Identities=26% Similarity=0.258 Sum_probs=100.2
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH--H------HhhcchHHH-HHHHHHHHhcCCceEEEcchh
Q 006535 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE--L------YVGMGASRV-RDLFARAKKEAPSIIFIDEID 434 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~--~------~vG~~~~~v-r~lF~~A~~~aP~ILfIDEID 434 (641)
..-++||+|.||||||.|.+.++.-+... +++++..... . ....++-.+ ...+-.|.. .|++|||+|
T Consensus 56 ~~ihiLlvGdpg~gKS~ll~~~~~~~pr~-v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~---GiccIDe~d 131 (331)
T PF00493_consen 56 GNIHILLVGDPGTGKSQLLKYVAKLAPRS-VYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADG---GICCIDEFD 131 (331)
T ss_dssp -S--EEEECSCHHCHHHHHHCCCCT-SSE-EEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTT---SEEEECTTT
T ss_pred cccceeeccchhhhHHHHHHHHHhhCCce-EEECCCCcccCCccceeccccccceeEEeCCchhcccC---ceeeecccc
Confidence 34579999999999999999887654322 2333221100 0 000000000 012333333 499999999
Q ss_pred hhhhhcCCcccccchhHHHHHHHHHHhhhcCCC----C-------CCcEEEEEecCCCC-------------CCChhhhC
Q 006535 435 AVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFD----S-------NSAVIVLGATNRSD-------------VLDPALRR 490 (641)
Q Consensus 435 aL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~----~-------~~~ViVIaATN~pd-------------~LD~ALlR 490 (641)
.+... ....|+..|+... . +...-|+|++|+.. .+++.|++
T Consensus 132 k~~~~---------------~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS 196 (331)
T PF00493_consen 132 KMKED---------------DRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS 196 (331)
T ss_dssp T--CH---------------HHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC
T ss_pred cccch---------------HHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh
Confidence 98431 1245556665421 1 23568999998754 57888998
Q ss_pred CCCcceEEEe-cCCCHHHHHHHHHHHHhcCCC--------------CCCCCCC-------------------HHHHHH--
Q 006535 491 PGRFDRVVMV-ETPDKIGREAILKVHVSKKEL--------------PLAKDID-------------------LGDIAS-- 534 (641)
Q Consensus 491 pgRFd~~I~v-~~Pd~~eR~eILk~~l~~~~l--------------~l~~dvd-------------------l~~LA~-- 534 (641)
|||..+.+ +.|+.+.-..+.+..+..... .++.+.- .+.|..
T Consensus 197 --RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Y 274 (331)
T PF00493_consen 197 --RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYY 274 (331)
T ss_dssp --C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHH
T ss_pred --hcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHH
Confidence 99988765 677765555554444332100 1111110 111111
Q ss_pred -----------hCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 006535 535 -----------MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (641)
Q Consensus 535 -----------~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~r 574 (641)
.....+.+.|+.+++-|...|..+-+..|+.+|+.+|++=
T Consensus 275 v~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L 325 (331)
T PF00493_consen 275 VELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRL 325 (331)
T ss_dssp CCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHH
T ss_pred HHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHH
Confidence 1123466788899999998998888999999999999864
No 256
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.12 E-value=9.7e-05 Score=76.18 Aligned_cols=186 Identities=22% Similarity=0.244 Sum_probs=113.6
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcC---CCeEEee-----hhhHHHHHhhc------------chHHHHHHHHHHHh-cCC
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEAE---VPFISCS-----ASEFVELYVGM------------GASRVRDLFARAKK-EAP 425 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg---~pfi~vs-----~se~~~~~vG~------------~~~~vr~lF~~A~~-~aP 425 (641)
-+.++|+-|+|||.+.|++...++ +-.++++ .+.+.+.++.. .++.-+.+....++ ..|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 377999999999999997776553 2223333 22333322221 12222334444433 445
Q ss_pred ceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCC------CCcceEEE
Q 006535 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRP------GRFDRVVM 499 (641)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRp------gRFd~~I~ 499 (641)
-++++||.+.+.... -..+.-|.+.-++....-.+++|+-.. |.+.+++| -|++-.+.
T Consensus 133 v~l~vdEah~L~~~~------------le~Lrll~nl~~~~~~~l~ivL~Gqp~----L~~~lr~~~l~e~~~R~~ir~~ 196 (269)
T COG3267 133 VVLMVDEAHDLNDSA------------LEALRLLTNLEEDSSKLLSIVLIGQPK----LRPRLRLPVLRELEQRIDIRIE 196 (269)
T ss_pred eEEeehhHhhhChhH------------HHHHHHHHhhcccccCceeeeecCCcc----cchhhchHHHHhhhheEEEEEe
Confidence 799999999985332 122222222222233333456655432 33322211 27776688
Q ss_pred ecCCCHHHHHHHHHHHHhcCC--CCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHH
Q 006535 500 VETPDKIGREAILKVHVSKKE--LPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFI 569 (641)
Q Consensus 500 v~~Pd~~eR~eILk~~l~~~~--l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~ 569 (641)
+++.+.++-...++.++..-+ .++..+-.+..+...+.| .|+-+.+++..|...|...++..|+...+.
T Consensus 197 l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 197 LPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred cCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 888899989999999987632 233333346777888888 678899999999999999898888876554
No 257
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.07 E-value=1.5e-05 Score=79.37 Aligned_cols=115 Identities=16% Similarity=0.203 Sum_probs=64.9
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHH-HHHhh----------------------cchHHHH
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV-ELYVG----------------------MGASRVR 414 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~-~~~vG----------------------~~~~~vr 414 (641)
|.+...-++++||||+|||+++..++.+. +.+.++++..++. +.+.. .....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 45556668999999999999999988643 6667777765421 11000 0011133
Q ss_pred HHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006535 415 DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 415 ~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN 479 (641)
.+.+.+....|++|+||-|.++....... ......+.+..++..+..+....++.++.+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~~~----~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLELSD----DRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHhCC----ccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 34444555578999999999986432110 11112223333333343333345566666644
No 258
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.07 E-value=4.1e-05 Score=79.29 Aligned_cols=174 Identities=23% Similarity=0.288 Sum_probs=90.4
Q ss_pred HHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHh--cCCCe---EEeehh------hHHH----HHhh
Q 006535 343 ELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE--AEVPF---ISCSAS------EFVE----LYVG 407 (641)
Q Consensus 343 ~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~e--lg~pf---i~vs~s------e~~~----~~vG 407 (641)
+++++.+.|.... ...+-|.|+|++|+|||+||+.+++. ....| +.++.+ ++.. ....
T Consensus 4 ~~~~l~~~L~~~~-------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 4 EIEKLKDWLLDNS-------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp HHHHHHHHHHTTT-------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCCC-------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 4556666655421 34566899999999999999999987 33222 222221 1111 1111
Q ss_pred --------cchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006535 408 --------MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 408 --------~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN 479 (641)
.......+.+.......+++|+||+++... .+..+...+.... .+..||.||.
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~-----------------~~~~l~~~~~~~~--~~~kilvTTR 137 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE-----------------DLEELREPLPSFS--SGSKILVTTR 137 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH-----------------HH-------HCHH--SS-EEEEEES
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccc-----------------ccccccccccccc--cccccccccc
Confidence 112233444444555669999999987642 1122222221111 2345555665
Q ss_pred CCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCC-CC-CCCCCHHHHHHhCCCCCHHHHHHH
Q 006535 480 RSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKEL-PL-AKDIDLGDIASMTTGFTGADLANL 547 (641)
Q Consensus 480 ~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l-~l-~~dvdl~~LA~~T~GfSgaDL~~L 547 (641)
..... ...- .-+..+.++..+.++-.+++...+..... .. ..+-....|++.+.| .|--|.-+
T Consensus 138 ~~~v~-~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 202 (287)
T PF00931_consen 138 DRSVA-GSLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLI 202 (287)
T ss_dssp CGGGG-TTHH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred ccccc-cccc---cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 43221 1111 11468899999999999999998765430 11 111235678888877 44444444
No 259
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.03 E-value=4.2e-05 Score=78.42 Aligned_cols=129 Identities=20% Similarity=0.203 Sum_probs=72.9
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCccc
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFR 445 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~ 445 (641)
.+..++||+|||||.++|++|..+|.+++.++|++-.+ ...+..+|.-+... -+.+++||++.|...-
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~~~v----- 100 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLSEEV----- 100 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSHHH-----
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-CchhhhhhhhhhhHHH-----
Confidence 46789999999999999999999999999999987544 34566677655554 3599999999885321
Q ss_pred ccchhHHHHHHHHHHhhhcCC-----------CCCCcEEEEEecCC----CCCCChhhhCCCCcceEEEecCCCHHHHHH
Q 006535 446 IVSNDEREQTLNQLLTEMDGF-----------DSNSAVIVLGATNR----SDVLDPALRRPGRFDRVVMVETPDKIGREA 510 (641)
Q Consensus 446 ~~~~~e~~~~LnqLL~emd~~-----------~~~~~ViVIaATN~----pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~e 510 (641)
-....+.+..+...+..- .-+...-+..|.|. ...||+.|+. -| |.|.+..||.....+
T Consensus 101 ---LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~~I~e 174 (231)
T PF12774_consen 101 ---LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLSLIAE 174 (231)
T ss_dssp ---HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HHHHHH
T ss_pred ---HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHHHHHH
Confidence 011112222222222111 01122334445553 2578888876 33 688999998775544
Q ss_pred HH
Q 006535 511 IL 512 (641)
Q Consensus 511 IL 512 (641)
++
T Consensus 175 i~ 176 (231)
T PF12774_consen 175 IL 176 (231)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 260
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.96 E-value=4e-05 Score=80.99 Aligned_cols=122 Identities=14% Similarity=0.170 Sum_probs=80.5
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH--------HH-hh----cchHHHHHHHHHHHhc----C
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE--------LY-VG----MGASRVRDLFARAKKE----A 424 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~--------~~-vG----~~~~~vr~lF~~A~~~----a 424 (641)
.+.|..+||+||+|+||+.+|.++|..+-+.--.-.|..+.. .. .+ -+.+.+|++.+.+... .
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCC
Confidence 466778999999999999999999997643210011111100 00 11 1345667766655432 2
Q ss_pred CceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCC
Q 006535 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETP 503 (641)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~P 503 (641)
.-|++||++|.+... .-|.||..++. +..++++|..|+.++.|.|.+++ |. ..+.|+++
T Consensus 96 ~kv~ii~~ad~mt~~---------------AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 96 YKIYIIHEADRMTLD---------------AISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred ceEEEEechhhcCHH---------------HHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 349999999998643 34889999984 55667888888889999999988 53 25556543
No 261
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.00034 Score=72.87 Aligned_cols=121 Identities=13% Similarity=0.159 Sum_probs=79.5
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-----eEEe-ehhhHHH--------HHh---hcchHHHHHHHHHHHh---
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-----FISC-SASEFVE--------LYV---GMGASRVRDLFARAKK--- 422 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg~p-----fi~v-s~se~~~--------~~v---G~~~~~vr~lF~~A~~--- 422 (641)
.+|..+||+||+|+||..+|.++|..+-+. .-.+ +|..+.. .+. .-+.+.+|++.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 467889999999999999999999865221 0000 1111110 000 1234556666554432
Q ss_pred --cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEe
Q 006535 423 --EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMV 500 (641)
Q Consensus 423 --~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v 500 (641)
...-|++||++|.+.. ...|.||..++. +..++++|..|+.++.+.|.+++ |-. .+.+
T Consensus 85 e~~~~KV~II~~ae~m~~---------------~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~ 144 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK---------------QSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCV-QYVV 144 (261)
T ss_pred hcCCCEEEEeccHhhhCH---------------HHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--hee-eeec
Confidence 2245999999999853 345899999984 55678888889889999999998 532 4555
Q ss_pred cCC
Q 006535 501 ETP 503 (641)
Q Consensus 501 ~~P 503 (641)
+.+
T Consensus 145 ~~~ 147 (261)
T PRK05818 145 LSK 147 (261)
T ss_pred CCh
Confidence 554
No 262
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.86 E-value=0.00014 Score=70.51 Aligned_cols=32 Identities=34% Similarity=0.371 Sum_probs=25.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehh
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~s 399 (641)
+|++||||||||+|+..++.+. |.+.++++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 7899999999999999887653 6677666643
No 263
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.85 E-value=3.4e-05 Score=78.55 Aligned_cols=73 Identities=25% Similarity=0.279 Sum_probs=42.1
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhh-H---------HHHHhhcchHHHHHHHHHHH--hcCCceEEEc
Q 006535 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASE-F---------VELYVGMGASRVRDLFARAK--KEAPSIIFID 431 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se-~---------~~~~vG~~~~~vr~lF~~A~--~~aP~ILfID 431 (641)
.|..+||||+||+|||++|+.+++. ..++..+.+. . ...-.....+.+.+.+.... .....+|+||
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVID 88 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVID 88 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEe
Confidence 4667999999999999999999742 2222222211 0 00000111223333343333 2345799999
Q ss_pred chhhhhh
Q 006535 432 EIDAVAK 438 (641)
Q Consensus 432 EIDaL~~ 438 (641)
+|+.+..
T Consensus 89 sI~~l~~ 95 (220)
T TIGR01618 89 NISALQN 95 (220)
T ss_pred cHHHHHH
Confidence 9999865
No 264
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.84 E-value=0.00011 Score=81.55 Aligned_cols=230 Identities=25% Similarity=0.305 Sum_probs=118.6
Q ss_pred cccCChHHHHHHHHHHHHh---cChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcc
Q 006535 333 DVAGVDEAKEELEEIVEFL---RSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMG 409 (641)
Q Consensus 333 DV~G~ee~K~~L~eiv~~L---~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~vG~~ 409 (641)
.|.|.+++|+.+.=++--- ..|+ .+..+---+|||.|.|||.|+-|.|-+-.-+-+-++. ++.. +.-.|.+
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK~LpD---g~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYT-SGKG--SSAAGLT 405 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRKRLPD---GVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYT-SGKG--SSAAGLT 405 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccccCCC---cceeccceeEEEecCCchhHHHHHHHHHhcCceEEEe-cCCC--cccccce
Confidence 4778888887665443211 0111 1112233569999999999999999886644332222 2110 0001111
Q ss_pred hHHHHHH-----HHH--HH-hcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC
Q 006535 410 ASRVRDL-----FAR--AK-KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (641)
Q Consensus 410 ~~~vr~l-----F~~--A~-~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~p 481 (641)
+..+|+- +-+ |. -....|++|||+|.+-... ...-++..+|.--.+-..--.-.-+.+.-|+||.|.+
T Consensus 406 ASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~D----RVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpv 481 (729)
T KOG0481|consen 406 ASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDD----RVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPV 481 (729)
T ss_pred eeEEecCCcceEEEecceEEEecCCEEEeehhhccCchh----hhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCc
Confidence 1111110 000 00 0112499999999984321 1223333333222221111011124456788888864
Q ss_pred -----------CCCC--hhhhCCCCcceEEEecCCCHHHHH-----HHHHHHHhcCCCCCC------CCCCHHHHHH---
Q 006535 482 -----------DVLD--PALRRPGRFDRVVMVETPDKIGRE-----AILKVHVSKKELPLA------KDIDLGDIAS--- 534 (641)
Q Consensus 482 -----------d~LD--~ALlRpgRFd~~I~v~~Pd~~eR~-----eILk~~l~~~~l~l~------~dvdl~~LA~--- 534 (641)
+.+| +.+++ |||..+-+..-..++|- -++..|..+.+..-+ ..+.++.+-+
T Consensus 482 fGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~ 559 (729)
T KOG0481|consen 482 FGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQ 559 (729)
T ss_pred cccccccCCcccccchhhhHhh--hccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHH
Confidence 2333 77788 99988777654333332 344455532211111 1111111100
Q ss_pred ---------------------------------------hCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 006535 535 ---------------------------------------MTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVER 574 (641)
Q Consensus 535 ---------------------------------------~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~r 574 (641)
.+--.+.++|+.+++-+-.+|..+-....|..|+++|++-
T Consensus 560 YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RL 638 (729)
T KOG0481|consen 560 YCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEEALRL 638 (729)
T ss_pred HHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHH
Confidence 1112456888999988888888888888999999999864
No 265
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.82 E-value=1.6e-05 Score=94.60 Aligned_cols=206 Identities=15% Similarity=0.197 Sum_probs=122.0
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChh--HHhhhCCCC-CC-eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhH
Q 006535 326 GDTITFADVAGVDEAKEELEEIVEFLRSPD--KYIRLGARP-PR-GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF 401 (641)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~--~~~~lg~~~-pk-gVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~ 401 (641)
..+....++.|....-..+.+-++-.++++ .|...+... .. .+|++||||+|||+.+.++|.++|..++..|.++.
T Consensus 314 ~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~ 393 (871)
T KOG1968|consen 314 YQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDV 393 (871)
T ss_pred cccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCcccc
Confidence 344455666666655544433333322221 122111111 12 37999999999999999999999999999998865
Q ss_pred HHHHhh-----c--chHHHHHHHH---HHH--hcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCC
Q 006535 402 VELYVG-----M--GASRVRDLFA---RAK--KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN 469 (641)
Q Consensus 402 ~~~~vG-----~--~~~~vr~lF~---~A~--~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~ 469 (641)
.+.... . +...+...|. ... .....||++||+|.+.. .+.+ . -..+.++.. .
T Consensus 394 RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~dRg----~----v~~l~~l~~-------k 457 (871)
T KOG1968|consen 394 RSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-EDRG----G----VSKLSSLCK-------K 457 (871)
T ss_pred ccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-hhhh----h----HHHHHHHHH-------h
Confidence 443221 1 2222333330 000 11122999999999865 1110 0 122333333 2
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHH
Q 006535 470 SAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVN 549 (641)
Q Consensus 470 ~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~ 549 (641)
..+-+|+++|..+......+. |-+..++|..|+...+..-+...+...++.+.++ .++++.+.+ ++||++.++
T Consensus 458 s~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~-~l~~~s~~~----~~DiR~~i~ 530 (871)
T KOG1968|consen 458 SSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDD-VLEEISKLS----GGDIRQIIM 530 (871)
T ss_pred ccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcH-HHHHHHHhc----ccCHHHHHH
Confidence 223556666665544443333 4445789999999999998888888777777666 477777765 578888877
Q ss_pred HHHHH
Q 006535 550 EAALL 554 (641)
Q Consensus 550 eAal~ 554 (641)
.-...
T Consensus 531 ~lq~~ 535 (871)
T KOG1968|consen 531 QLQFW 535 (871)
T ss_pred HHhhh
Confidence 76554
No 266
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.80 E-value=0.00025 Score=78.33 Aligned_cols=108 Identities=12% Similarity=0.179 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHh----cCCCeEEeehhhHHHHHhhcchHHHH
Q 006535 339 EAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSASEFVELYVGMGASRVR 414 (641)
Q Consensus 339 e~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~e----lg~pfi~vs~se~~~~~vG~~~~~vr 414 (641)
.....|..++.++.. ..++++.||+|||||+++.+++.. .| -.++.+.++.....
T Consensus 194 ~k~~~L~rl~~fve~-----------~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~~------- 252 (449)
T TIGR02688 194 QKLLLLARLLPLVEP-----------NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIST------- 252 (449)
T ss_pred HHHHHHHhhHHHHhc-----------CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHHH-------
Confidence 333445555555543 356999999999999999998776 24 22334444332211
Q ss_pred HHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcC---------CCCCCcEEEEEecCC
Q 006535 415 DLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG---------FDSNSAVIVLGATNR 480 (641)
Q Consensus 415 ~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~---------~~~~~~ViVIaATN~ 480 (641)
..+. .-....+|+|||+..+.-.+. ...+..+...|.. ...+..+++++-+|.
T Consensus 253 ~~lg--~v~~~DlLI~DEvgylp~~~~-----------~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~ 314 (449)
T TIGR02688 253 RQIG--LVGRWDVVAFDEVATLKFAKP-----------KELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPL 314 (449)
T ss_pred HHHh--hhccCCEEEEEcCCCCcCCch-----------HHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCC
Confidence 1111 123456999999987643221 2334444444542 123345777777664
No 267
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.77 E-value=6.5e-05 Score=80.56 Aligned_cols=102 Identities=20% Similarity=0.270 Sum_probs=61.3
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe-EEeehhhHHHH-------HhhcchHHHHHHHHHHHhcCCceEEEcch
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF-ISCSASEFVEL-------YVGMGASRVRDLFARAKKEAPSIIFIDEI 433 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pf-i~vs~se~~~~-------~vG~~~~~vr~lF~~A~~~aP~ILfIDEI 433 (641)
..+++|+.|||+-|.|||+|.-.+-..+..+- ..+.-..|+-. ..|+. .-+..+-+...++ -.||+|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~~~~-~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADELAAE-TRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHHHhc-CCEEEeeee
Confidence 34789999999999999999999988764432 22332333321 12222 1122222222222 249999998
Q ss_pred hhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC
Q 006535 434 DAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (641)
Q Consensus 434 DaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~p 481 (641)
+- .+-...-++..|+.++- ..+|++++|+|.+
T Consensus 140 ~V------------tDI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~ 171 (367)
T COG1485 140 EV------------TDIADAMILGRLLEALF----ARGVVLVATSNTA 171 (367)
T ss_pred ee------------cChHHHHHHHHHHHHHH----HCCcEEEEeCCCC
Confidence 53 11222346666776664 4589999999975
No 268
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.00034 Score=74.47 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=85.2
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCC-----------C--eEEeehhhHHHHHhhcchHHHHHHHHHHHh-----cC
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----------P--FISCSASEFVELYVGMGASRVRDLFARAKK-----EA 424 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg~-----------p--fi~vs~se~~~~~vG~~~~~vr~lF~~A~~-----~a 424 (641)
+.+...||+|+.|.||+.+|++++..+-+ | ++.++... ..-+...++++.+.... +.
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g-----~~i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD-----KDLSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC-----CcCCHHHHHHHHHHhccCCcccCC
Confidence 45567899999999999999999987622 2 22222000 01123456666655532 24
Q ss_pred CceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCC
Q 006535 425 PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPD 504 (641)
Q Consensus 425 P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd 504 (641)
.-|++||++|.+.. ...|.||..++. +...+++|..|+.++.|-+.+++ |- ..+.+.+|+
T Consensus 91 ~KvvII~~~e~m~~---------------~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~ 150 (299)
T PRK07132 91 KKILIIKNIEKTSN---------------SLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPD 150 (299)
T ss_pred ceEEEEecccccCH---------------HHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCC
Confidence 45999999988742 344788888885 33455666666677888889887 43 378999998
Q ss_pred HHHHHHHHHH
Q 006535 505 KIGREAILKV 514 (641)
Q Consensus 505 ~~eR~eILk~ 514 (641)
.++..+.|..
T Consensus 151 ~~~l~~~l~~ 160 (299)
T PRK07132 151 QQKILAKLLS 160 (299)
T ss_pred HHHHHHHHHH
Confidence 8877766654
No 269
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.76 E-value=7.4e-05 Score=67.20 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcC
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEAE 390 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elg 390 (641)
|.|+||||+|||++|+.+|..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999988653
No 270
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.73 E-value=0.00012 Score=69.92 Aligned_cols=41 Identities=22% Similarity=0.429 Sum_probs=33.4
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHH
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~ 405 (641)
.++..|+|+|+||||||++|+++|..++.+|+.. ..+....
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~--d~~~~~~ 42 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT--DHLIEAR 42 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHHH
Confidence 3567899999999999999999999999998854 3444433
No 271
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.00036 Score=73.88 Aligned_cols=155 Identities=16% Similarity=0.234 Sum_probs=93.2
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC-------eEEe-ehh--------hHHHHH-hh--cchHHHHHHHHHHHh
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP-------FISC-SAS--------EFVELY-VG--MGASRVRDLFARAKK 422 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p-------fi~v-s~s--------e~~~~~-vG--~~~~~vr~lF~~A~~ 422 (641)
.+.+..+||+|| +||+++|+++|..+-+. .-.+ +|. ++.... .| -+...+|++.+.+..
T Consensus 21 ~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~ 98 (290)
T PRK07276 21 DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQ 98 (290)
T ss_pred CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhh
Confidence 466778999996 68999999999865321 1011 111 111000 01 134677777666543
Q ss_pred ----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEE
Q 006535 423 ----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVV 498 (641)
Q Consensus 423 ----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I 498 (641)
....|++||++|.+.. ..-|.||..++. +..++++|..|+.++.+-|.+++ |. ..+
T Consensus 99 ~p~~~~~kV~II~~ad~m~~---------------~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i 158 (290)
T PRK07276 99 SGYEGKQQVFIIKDADKMHV---------------NAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RT-QIF 158 (290)
T ss_pred CcccCCcEEEEeehhhhcCH---------------HHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cc-eee
Confidence 2235999999999853 334889999984 44557888888888999999988 54 367
Q ss_pred EecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHH
Q 006535 499 MVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLV 548 (641)
Q Consensus 499 ~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv 548 (641)
.|+. +.++..+++. +.+++ .+ ...++....| ++.....+.
T Consensus 159 ~f~~-~~~~~~~~L~----~~g~~--~~--~a~~la~~~~-s~~~A~~l~ 198 (290)
T PRK07276 159 HFPK-NEAYLIQLLE----QKGLL--KT--QAELLAKLAQ-STSEAEKLA 198 (290)
T ss_pred eCCC-cHHHHHHHHH----HcCCC--hH--HHHHHHHHCC-CHHHHHHHh
Confidence 7754 4444444443 33332 11 2233333445 666665555
No 272
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.72 E-value=0.00019 Score=80.35 Aligned_cols=79 Identities=27% Similarity=0.402 Sum_probs=57.4
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHh------hc--------chHHHHHHHHHHHhc
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV------GM--------GASRVRDLFARAKKE 423 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~~v------G~--------~~~~vr~lF~~A~~~ 423 (641)
|..+..-+||+||||+|||+|+..+|... +.+.++++..+..+... |. .+..+..+++.....
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 45556678999999999999999998765 67788888765443221 11 123356677777777
Q ss_pred CCceEEEcchhhhhhh
Q 006535 424 APSIIFIDEIDAVAKS 439 (641)
Q Consensus 424 aP~ILfIDEIDaL~~~ 439 (641)
.|.+|+||+|..+...
T Consensus 156 ~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 156 KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCCEEEEechhhhccc
Confidence 8999999999988643
No 273
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.71 E-value=0.00019 Score=72.40 Aligned_cols=39 Identities=28% Similarity=0.293 Sum_probs=31.5
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehh
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~s 399 (641)
|.+...-++++||||+|||+++..+|.+. +.+.++++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 45556678999999999999999998744 6777777766
No 274
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.71 E-value=0.00016 Score=77.59 Aligned_cols=119 Identities=19% Similarity=0.171 Sum_probs=68.5
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHH----------------hhcchHHHHHHHHHHH
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY----------------VGMGASRVRDLFARAK 421 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~~----------------vG~~~~~vr~lF~~A~ 421 (641)
|.+...-++|+||||||||+||..++.++ +.+.++++..+..+.. ....++.+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 45556678999999999999988776644 6677777664432210 0112222333333345
Q ss_pred hcCCceEEEcchhhhhhhcC--CcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006535 422 KEAPSIIFIDEIDAVAKSRD--GRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~--~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN 479 (641)
...+.+|+||-+.++.+... +...........+.+.+++..+...-...++.+|.+..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 67789999999999875421 10000001122344455555555554455666666643
No 275
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.68 E-value=0.00024 Score=77.85 Aligned_cols=79 Identities=29% Similarity=0.434 Sum_probs=55.6
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHH------hhc--------chHHHHHHHHHHHhc
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELY------VGM--------GASRVRDLFARAKKE 423 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~~------vG~--------~~~~vr~lF~~A~~~ 423 (641)
|..+..-+||+|+||+|||+|+..+|... +.+.++++..+-.+.. .|. .+..+..+++.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 45556678999999999999999998764 4577777765433211 111 123355667777778
Q ss_pred CCceEEEcchhhhhhh
Q 006535 424 APSIIFIDEIDAVAKS 439 (641)
Q Consensus 424 aP~ILfIDEIDaL~~~ 439 (641)
.|.+|+||+|..+...
T Consensus 158 ~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 158 KPDLVIIDSIQTVYSS 173 (372)
T ss_pred CCcEEEEcchHHhhcc
Confidence 8999999999998643
No 276
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.64 E-value=0.00036 Score=70.94 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=30.8
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehh
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~s 399 (641)
|.+.+..++++|+||+|||+|+..++.+. +.+.++++..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 56677789999999999999999997653 6666666543
No 277
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.63 E-value=4.2e-05 Score=69.02 Aligned_cols=30 Identities=40% Similarity=0.697 Sum_probs=27.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEee
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elg~pfi~vs 397 (641)
|+|.||||+||||+|+.+|..+|++++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999998876554
No 278
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.61 E-value=0.00085 Score=74.13 Aligned_cols=135 Identities=18% Similarity=0.178 Sum_probs=80.5
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccc
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI 446 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~ 446 (641)
-++|+||.+||||++++.+.....-.+++++..+........ ......+..+.....+.||||||+.+-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~--------- 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVP--------- 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCch---------
Confidence 799999999999999988888775556666655544322111 111222222222244699999998762
Q ss_pred cchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHH-------------HHH
Q 006535 447 VSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREA-------------ILK 513 (641)
Q Consensus 447 ~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~e-------------ILk 513 (641)
.+...+..+..... . .+++.+++...-....+-.-+||. ..+.+.+.+..|... .++
T Consensus 108 ----~W~~~lk~l~d~~~---~--~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~~~~~~~~~~~~~~f~ 177 (398)
T COG1373 108 ----DWERALKYLYDRGN---L--DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKLKGEEIEPSKLELLFE 177 (398)
T ss_pred ----hHHHHHHHHHcccc---c--eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhhcccccchhHHHHHHH
Confidence 24455555544322 1 344444443333333344446884 577888888888854 466
Q ss_pred HHHhcCCCC
Q 006535 514 VHVSKKELP 522 (641)
Q Consensus 514 ~~l~~~~l~ 522 (641)
.++..-++|
T Consensus 178 ~Yl~~GGfP 186 (398)
T COG1373 178 KYLETGGFP 186 (398)
T ss_pred HHHHhCCCc
Confidence 666655554
No 279
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00041 Score=82.60 Aligned_cols=177 Identities=24% Similarity=0.339 Sum_probs=113.7
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhc----------CCCeEEeehhhHHH--HHhhcchHHHHHHHHHHHh-cCCceEEEcc
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEA----------EVPFISCSASEFVE--LYVGMGASRVRDLFARAKK-EAPSIIFIDE 432 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~el----------g~pfi~vs~se~~~--~~vG~~~~~vr~lF~~A~~-~aP~ILfIDE 432 (641)
++-+|.|.||+|||.++.-+|+.. +..++.++...++. ++.|+.+.+++++.+.+.. ...-||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 578999999999999999999864 34566666654433 5677788999999998884 4455899999
Q ss_pred hhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC-----CCCChhhhCCCCcceEEEecCCCHHH
Q 006535 433 IDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS-----DVLDPALRRPGRFDRVVMVETPDKIG 507 (641)
Q Consensus 433 IDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~p-----d~LD~ALlRpgRFd~~I~v~~Pd~~e 507 (641)
++-+...... .+ .....| +|..+- ...++-+|+||..- -.-||++-| ||+ .+.++.|+..+
T Consensus 289 lh~lvg~g~~---~~----~~d~~n-lLkp~L---~rg~l~~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~ 354 (898)
T KOG1051|consen 289 LHWLVGSGSN---YG----AIDAAN-LLKPLL---ARGGLWCIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVEN 354 (898)
T ss_pred eeeeecCCCc---ch----HHHHHH-hhHHHH---hcCCeEEEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccc
Confidence 9998765432 11 122222 222222 23348889887532 244899999 998 66788998877
Q ss_pred HHHHHHHHHhcCCC----CCCCC--CCHHHHH--HhCCCCCHHHHHHHHHHHHHHHH
Q 006535 508 REAILKVHVSKKEL----PLAKD--IDLGDIA--SMTTGFTGADLANLVNEAALLAG 556 (641)
Q Consensus 508 R~eILk~~l~~~~l----~l~~d--vdl~~LA--~~T~GfSgaDL~~Lv~eAal~A~ 556 (641)
-..||.....+..+ .+.+. +....++ ..+..+-+.-...++++|+....
T Consensus 355 ~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~ 411 (898)
T KOG1051|consen 355 LSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVK 411 (898)
T ss_pred hhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHHHHh
Confidence 67777766544211 11111 1112222 23334555667788888876553
No 280
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.59 E-value=0.00044 Score=70.75 Aligned_cols=77 Identities=19% Similarity=0.285 Sum_probs=47.0
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhh----HHHHHh--hc-----------------------
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASE----FVELYV--GM----------------------- 408 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se----~~~~~v--G~----------------------- 408 (641)
|.+...-++|.||||||||+++..++... |.+.++++..+ +..... |.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 34556679999999999999986555433 55666665432 111100 00
Q ss_pred --chHHHHHHHHHHHhcCCceEEEcchhhhh
Q 006535 409 --GASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (641)
Q Consensus 409 --~~~~vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (641)
....+..+...+....|.+++|||+-.+.
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 01223344444445578899999998764
No 281
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.59 E-value=0.00052 Score=68.80 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=30.2
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehh
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~s 399 (641)
|.....-++++|+||+|||+++..+|.+. +.+.++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 44555569999999999999999998764 5666666553
No 282
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.58 E-value=0.00027 Score=75.90 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=66.4
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHH-------------Hh---hcchHHHHHHHHHHH
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-------------YV---GMGASRVRDLFARAK 421 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~-------------~v---G~~~~~vr~lF~~A~ 421 (641)
|.+..+-++++||||||||+||-.++.++ +.+.++++..+-.+. ++ ...++.+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 44555668899999999999999887543 667777766432221 00 112222222333345
Q ss_pred hcCCceEEEcchhhhhhhcCCcccccc--hhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006535 422 KEAPSIIFIDEIDAVAKSRDGRFRIVS--NDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~--~~e~~~~LnqLL~emd~~~~~~~ViVIaATN 479 (641)
...+++|+||-+-++.+...-....+. .....+.+.+.+..+.......++.+|.+..
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 667899999999999753211000011 1122334455555554443445566665543
No 283
>PRK13949 shikimate kinase; Provisional
Probab=97.57 E-value=0.00067 Score=66.09 Aligned_cols=31 Identities=45% Similarity=0.662 Sum_probs=29.0
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEee
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg~pfi~vs 397 (641)
.|+|.||||+|||++++.+|+.++.+|+..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5999999999999999999999999998765
No 284
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.56 E-value=0.00033 Score=79.37 Aligned_cols=228 Identities=21% Similarity=0.268 Sum_probs=119.0
Q ss_pred cccCChHHHHHHHHHHHH--hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcch
Q 006535 333 DVAGVDEAKEELEEIVEF--LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGA 410 (641)
Q Consensus 333 DV~G~ee~K~~L~eiv~~--L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~vG~~~ 410 (641)
.|.|++++|..+.-.+-- -+++..- -..+---+|||+|.|||||+-+.|.++.-+..-++..--. ..-+|.++
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~k--hkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqG---ASavGLTa 524 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGK--HKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQG---ASAVGLTA 524 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCC--ceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCC---ccccceeE
Confidence 478888888776543322 2232210 1123335699999999999999999998765554432100 00111111
Q ss_pred HHHH-----HHHHHHHh---cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHH-----HHhhhcCCCCCCcEEEEEe
Q 006535 411 SRVR-----DLFARAKK---EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQ-----LLTEMDGFDSNSAVIVLGA 477 (641)
Q Consensus 411 ~~vr-----~lF~~A~~---~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~Lnq-----LL~emd~~~~~~~ViVIaA 477 (641)
...+ ++--+|-+ ....|.+|||+|.+....- ..-++..+|.--. +.+.+ +....||||
T Consensus 525 ~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDR----tSIHEAMEQQSISISKAGIVtsL-----qArctvIAA 595 (854)
T KOG0477|consen 525 YVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDR----TSIHEAMEQQSISISKAGIVTSL-----QARCTVIAA 595 (854)
T ss_pred EEeeCCccceeeeccCeEEEccCceEEeehhhhhccccc----chHHHHHHhcchhhhhhhHHHHH-----Hhhhhhhee
Confidence 1111 11111100 0123889999999864321 1223333321111 11111 234578899
Q ss_pred cCCC-----------C--CCChhhhCCCCcceEEEecC---CCHHHHHH--HHHHHHhcCC-------------------
Q 006535 478 TNRS-----------D--VLDPALRRPGRFDRVVMVET---PDKIGREA--ILKVHVSKKE------------------- 520 (641)
Q Consensus 478 TN~p-----------d--~LD~ALlRpgRFd~~I~v~~---Pd~~eR~e--ILk~~l~~~~------------------- 520 (641)
+|+. + .|-..+++ |||-.-.+.. |-.+++.. ++..|.+...
T Consensus 596 anPigGRY~~s~tFaqNV~ltePIlS--RFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ 673 (854)
T KOG0477|consen 596 ANPIGGRYNPSLTFAQNVDLTEPILS--RFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEP 673 (854)
T ss_pred cCCCCCccCCccchhhccccccchhh--hcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCccccccccccccc
Confidence 9872 1 44456677 8986554432 33333332 3333332110
Q ss_pred -----------------CCCCCCCCHHHHHH---------hCCC---CCHHHHHHHHHHHHHHHHhcCCccccHHHHHHH
Q 006535 521 -----------------LPLAKDIDLGDIAS---------MTTG---FTGADLANLVNEAALLAGRLNKVVVEKIDFIHA 571 (641)
Q Consensus 521 -----------------l~l~~dvdl~~LA~---------~T~G---fSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eA 571 (641)
.|--.+.|.+.++. ...| .+.+-|+.++.-+...|...-+..|+.+|+..|
T Consensus 674 ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~A 753 (854)
T KOG0477|consen 674 IPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMA 753 (854)
T ss_pred ChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHH
Confidence 01111223333332 1112 255888888888888887778889999999998
Q ss_pred HHHHh
Q 006535 572 VERSI 576 (641)
Q Consensus 572 l~rvi 576 (641)
+.-++
T Consensus 754 I~v~l 758 (854)
T KOG0477|consen 754 IRVML 758 (854)
T ss_pred HHHHH
Confidence 87544
No 285
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.55 E-value=0.00042 Score=67.18 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.9
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhc
Q 006535 364 PPRGVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el 389 (641)
.+..++++|+||+|||+++..+|..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 34569999999999999999999865
No 286
>PRK08118 topology modulation protein; Reviewed
Probab=97.55 E-value=0.00012 Score=71.25 Aligned_cols=32 Identities=28% Similarity=0.563 Sum_probs=29.7
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeeh
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~ 398 (641)
.|++.||||+||||||+.|+..++.|++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 48999999999999999999999999988764
No 287
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.53 E-value=0.00012 Score=72.61 Aligned_cols=123 Identities=18% Similarity=0.170 Sum_probs=59.6
Q ss_pred eEEEcCCCCcHHHHHHHH-HHh---cCCCeEEeehhhHH-HHHhh---cchH-------------HHHHHHHHHHhcCCc
Q 006535 368 VLLVGLPGTGKTLLAKAV-AGE---AEVPFISCSASEFV-ELYVG---MGAS-------------RVRDLFARAKKEAPS 426 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAl-A~e---lg~pfi~vs~se~~-~~~vG---~~~~-------------~vr~lF~~A~~~aP~ 426 (641)
.+++|.||+|||+.|-.. +.. .|.+++. +...+. +.... .... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 588999999999988655 432 3666655 443221 11000 0000 001111111111457
Q ss_pred eEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCC
Q 006535 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETP 503 (641)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~P 503 (641)
+|+|||++.+.+.+... .......+ +++.+.. ..++-||.+|..+..+|+.+++ ..+.++.+..+
T Consensus 82 liviDEa~~~~~~r~~~-----~~~~~~~~-~~l~~hR----h~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWK-----GKKVPEII-EFLAQHR----HYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T------T----HHH-HGGGGCC----CTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred EEEEECChhhcCCCccc-----cccchHHH-HHHHHhC----cCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 99999999998877531 11122333 4444433 4567888899999999999986 77777777654
No 288
>PHA00729 NTP-binding motif containing protein
Probab=97.53 E-value=0.00013 Score=74.45 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=23.0
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcC
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEAE 390 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg 390 (641)
..++|+|+||||||+||.++|.+++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3699999999999999999999875
No 289
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.52 E-value=0.0011 Score=74.15 Aligned_cols=194 Identities=18% Similarity=0.244 Sum_probs=97.3
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH-------HH--------hhc-----chHHHHHHHHH
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE-------LY--------VGM-----GASRVRDLFAR 419 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~-------~~--------vG~-----~~~~vr~lF~~ 419 (641)
..|..++|+|++|+|||+++..+|..+ |.....++++.+.. .+ .+. ....+++.++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 467889999999999999999998865 55555555543211 00 110 11223444444
Q ss_pred HHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhh--CCCCcceE
Q 006535 420 AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALR--RPGRFDRV 497 (641)
Q Consensus 420 A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALl--RpgRFd~~ 497 (641)
+... .+|+||..-.+.. + +..+.+|-...+......-++|+-++...+.++.+-. ..-.++ .
T Consensus 173 ~~~~--DvVIIDTAGr~~~----------d---~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~~~l~i~-g 236 (437)
T PRK00771 173 FKKA--DVIIVDTAGRHAL----------E---EDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIG-G 236 (437)
T ss_pred hhcC--CEEEEECCCcccc----------h---HHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHHhcCCCC-E
Confidence 4443 6899998744321 1 1222222222222233344555555544333332211 100122 2
Q ss_pred EEecCCCHHHHHH-HHHHHHhcCCCC---------C--CCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH---------HH
Q 006535 498 VMVETPDKIGREA-ILKVHVSKKELP---------L--AKDIDLGDIASMTTGFTGADLANLVNEAALL---------AG 556 (641)
Q Consensus 498 I~v~~Pd~~eR~e-ILk~~l~~~~l~---------l--~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~---------A~ 556 (641)
+-+...|...|-- +|..... .+.| + -...+.+.++.+.-|+ +|+..+++.|... +.
T Consensus 237 vIlTKlD~~a~~G~~ls~~~~-~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilgm--gd~~~l~e~~~~~~~~~~~~~~~~ 313 (437)
T PRK00771 237 IIITKLDGTAKGGGALSAVAE-TGAPIKFIGTGEKIDDLERFDPDRFISRLLGM--GDLESLLEKVEEALDEEEEEKDVE 313 (437)
T ss_pred EEEecccCCCcccHHHHHHHH-HCcCEEEEecCCCcccCCcCCHHHHHHHHhCC--CChHHHHHHHHHhhhHHHHHHHHH
Confidence 3445555544433 3333221 1222 1 1123567777776554 5777777765432 11
Q ss_pred hcCCccccHHHHHHHHHHH
Q 006535 557 RLNKVVVEKIDFIHAVERS 575 (641)
Q Consensus 557 r~~~~~It~~d~~eAl~rv 575 (641)
+-.+...+.+||.+-++.+
T Consensus 314 ~~~~~~f~l~d~~~q~~~~ 332 (437)
T PRK00771 314 KMMKGKFTLKDMYKQLEAM 332 (437)
T ss_pred HHHcCCcCHHHHHHHHHHH
Confidence 1123456788888877654
No 290
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.51 E-value=0.0003 Score=65.14 Aligned_cols=37 Identities=32% Similarity=0.474 Sum_probs=30.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHh
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~v 406 (641)
|+++||||+|||++|+.++..++ ...++...+.....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~ 38 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLA 38 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHc
Confidence 78999999999999999999988 55566666665443
No 291
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=97.51 E-value=2.7e-05 Score=68.80 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=23.9
Q ss_pred ccceechHHHHHHHHcCCccEEEEeCcEEE
Q 006535 179 TFVSVPYSDFLSKINSNQVAKVEVDGVHIM 208 (641)
Q Consensus 179 ~~~~~~ys~f~~~~~~~~v~~v~~~~~~~~ 208 (641)
...+++||+|+++|++|+|++|++.++.+.
T Consensus 26 ~~~~i~YS~F~~~l~~g~V~~V~i~~~~~~ 55 (110)
T PF06480_consen 26 QTKEISYSEFLQMLEKGNVKKVVIQNDKIT 55 (110)
T ss_dssp SSEE--HHHHHHTGGGT-EEEEEEETTTEE
T ss_pred CCcEECHHHHHHHHHcCCEEEEEEECCEEE
Confidence 466899999999999999999999987666
No 292
>PF14516 AAA_35: AAA-like domain
Probab=97.51 E-value=0.005 Score=66.36 Aligned_cols=165 Identities=13% Similarity=0.117 Sum_probs=90.2
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH-----------HHh-----------------h---cch
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE-----------LYV-----------------G---MGA 410 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~-----------~~v-----------------G---~~~ 410 (641)
+.-+.+.||..+|||+|...+...+ |...+++++..+-. .+. . ...
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 4468999999999999999987654 67777776654311 000 0 011
Q ss_pred HHHHHHHHHH---HhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChh
Q 006535 411 SRVRDLFARA---KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPA 487 (641)
Q Consensus 411 ~~vr~lF~~A---~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~A 487 (641)
......|+.. ....|-||+|||||.+..... ..++.-..+..+...-.....-..+.+|.+......+...
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~------~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~ 184 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ------IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILD 184 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc------hHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccC
Confidence 2333344432 224688999999999974321 1112222222322221111111233333333222222221
Q ss_pred h-hCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCC
Q 006535 488 L-RRPGRFDRVVMVETPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (641)
Q Consensus 488 L-lRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfS 540 (641)
. .+|-.+...+.++..+.++-..+++.+- ....... ++.|-..|.|..
T Consensus 185 ~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~----~~~~~~~-~~~l~~~tgGhP 233 (331)
T PF14516_consen 185 INQSPFNIGQPIELPDFTPEEVQELAQRYG----LEFSQEQ-LEQLMDWTGGHP 233 (331)
T ss_pred CCCCCcccccceeCCCCCHHHHHHHHHhhh----ccCCHHH-HHHHHHHHCCCH
Confidence 2 3454455677788888888888877763 3344443 888888888843
No 293
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.50 E-value=0.00031 Score=73.75 Aligned_cols=68 Identities=24% Similarity=0.367 Sum_probs=44.2
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCC----------CeEEee-hhhHHHHHhhc-------------chHHHHHHHHHHH
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEAEV----------PFISCS-ASEFVELYVGM-------------GASRVRDLFARAK 421 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg~----------pfi~vs-~se~~~~~vG~-------------~~~~vr~lF~~A~ 421 (641)
.+++|.||+|+|||+|.+++++.... ++..++ ..++...+.+. ...+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 57999999999999999999997632 222222 12332221111 1122345666777
Q ss_pred hcCCceEEEcch
Q 006535 422 KEAPSIIFIDEI 433 (641)
Q Consensus 422 ~~aP~ILfIDEI 433 (641)
...|.+|++||+
T Consensus 192 ~~~P~villDE~ 203 (270)
T TIGR02858 192 SMSPDVIVVDEI 203 (270)
T ss_pred hCCCCEEEEeCC
Confidence 789999999995
No 294
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.46 E-value=0.00086 Score=59.71 Aligned_cols=24 Identities=46% Similarity=0.450 Sum_probs=20.9
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhc
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~el 389 (641)
++++++||+|+|||+++-.++.++
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999988887765
No 295
>PRK07261 topology modulation protein; Provisional
Probab=97.46 E-value=0.00019 Score=70.00 Aligned_cols=31 Identities=23% Similarity=0.565 Sum_probs=28.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEeeh
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elg~pfi~vs~ 398 (641)
|++.|+||+|||+||+.++...+.|++..+.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 8999999999999999999999999887754
No 296
>PRK06762 hypothetical protein; Provisional
Probab=97.44 E-value=0.00053 Score=65.70 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=33.2
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~ 404 (641)
|.-++|+|+||+|||++|+.++..++..++.++...+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~ 41 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRD 41 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHH
Confidence 5568999999999999999999998666777777666553
No 297
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.41 E-value=0.00046 Score=72.40 Aligned_cols=190 Identities=21% Similarity=0.260 Sum_probs=101.3
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHH------hcCCCeEEeehhhHHH-----HHhhcchHHHHHHHHHHHh--------
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAG------EAEVPFISCSASEFVE-----LYVGMGASRVRDLFARAKK-------- 422 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~------elg~pfi~vs~se~~~-----~~vG~~~~~vr~lF~~A~~-------- 422 (641)
.+....+||.||.|.||+.||+.+-. .+.-+|+.++|..+.. ...| .++..|.-|+.
T Consensus 205 ~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfg----hvkgaftga~~~r~gllrs 280 (531)
T COG4650 205 IRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFG----HVKGAFTGARESREGLLRS 280 (531)
T ss_pred hhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHh----hhccccccchhhhhhhhcc
Confidence 44556699999999999999998854 4578999999986632 1111 12222222211
Q ss_pred cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcC--C-------CCCCcEEEEEecCCC-------CCCCh
Q 006535 423 EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG--F-------DSNSAVIVLGATNRS-------DVLDP 486 (641)
Q Consensus 423 ~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~--~-------~~~~~ViVIaATN~p-------d~LD~ 486 (641)
....++|+|||..|+...+ ..||..++. | +-...+-+|+.|.+. ...-+
T Consensus 281 adggmlfldeigelgadeq---------------amllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fre 345 (531)
T COG4650 281 ADGGMLFLDEIGELGADEQ---------------AMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFRE 345 (531)
T ss_pred CCCceEehHhhhhcCccHH---------------HHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHH
Confidence 1234999999988864332 223333332 1 112345566666442 11122
Q ss_pred hhhCCCCcceEEEecCCCHHHHHHH--------HHHHHhcCCCC--CCCCCCHHHHHHh-----CCCCCHHHHHHHHHHH
Q 006535 487 ALRRPGRFDRVVMVETPDKIGREAI--------LKVHVSKKELP--LAKDIDLGDIASM-----TTGFTGADLANLVNEA 551 (641)
Q Consensus 487 ALlRpgRFd~~I~v~~Pd~~eR~eI--------Lk~~l~~~~l~--l~~dvdl~~LA~~-----T~GfSgaDL~~Lv~eA 551 (641)
.|.- |+. ...|.+|...+|.+= |..|....+-. +..+..-..++-. +..-+-++|..-+.+.
T Consensus 346 dl~a--rin-lwtf~lpgl~qr~ediepnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrm 422 (531)
T COG4650 346 DLYA--RIN-LWTFTLPGLRQRQEDIEPNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRM 422 (531)
T ss_pred HHHH--hhh-eeeeeccccccCccccCCCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHH
Confidence 2222 332 456778887777652 33333322211 1111111112111 1112447777777666
Q ss_pred HHHHHhcCCccccHHHHHHHHHHHh
Q 006535 552 ALLAGRLNKVVVEKIDFIHAVERSI 576 (641)
Q Consensus 552 al~A~r~~~~~It~~d~~eAl~rvi 576 (641)
+.+| +...|+.+.+++.+.+..
T Consensus 423 atla---d~grit~~~ve~ei~rlr 444 (531)
T COG4650 423 ATLA---DSGRITLDVVEDEINRLR 444 (531)
T ss_pred HHHh---cCCceeHHHHHHHHHHHH
Confidence 6666 455678777777776644
No 298
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.41 E-value=0.0032 Score=66.55 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=48.5
Q ss_pred CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCC----------------hh
Q 006535 424 APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD----------------PA 487 (641)
Q Consensus 424 aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD----------------~A 487 (641)
.+-||||||+|++.+. + +.+++..+..+-...++++|.+.++. .+. ..
T Consensus 172 ~~iViiIDdLDR~~~~-----------~----i~~~l~~ik~~~~~~~i~~Il~~D~~-~l~~ai~~~~~~~~~~~~~~~ 235 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSPE-----------E----IVELLEAIKLLLDFPNIIFILAFDPE-ILEKAIEKNYGEGFDEIDGRE 235 (325)
T ss_pred ceEEEEEcchhcCCcH-----------H----HHHHHHHHHHhcCCCCeEEEEEecHH-HHHHHHHhhcCcccccccHHH
Confidence 3569999999998432 1 23334444433344678888777642 111 12
Q ss_pred hhCCCCcceEEEecCCCHHHHHHHHHHHHhc
Q 006535 488 LRRPGRFDRVVMVETPDKIGREAILKVHVSK 518 (641)
Q Consensus 488 LlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~ 518 (641)
.+.. -|+..+.+|.|+..+...++...+..
T Consensus 236 yLeK-iiq~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 236 YLEK-IIQVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred HHHh-hcCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 2221 46778899999998888888777544
No 299
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.0011 Score=72.95 Aligned_cols=132 Identities=13% Similarity=0.211 Sum_probs=72.2
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhc-------CCCeEEeehhhHH-------HHH---------hhcchHHHHHHHHH
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA-------EVPFISCSASEFV-------ELY---------VGMGASRVRDLFAR 419 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el-------g~pfi~vs~se~~-------~~~---------vG~~~~~vr~lF~~ 419 (641)
..|..++|+||+|+|||+++..+|..+ +..+..+++..+. ..| .......+...+..
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 346789999999999999999998754 2334333333221 111 11122333333333
Q ss_pred HHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCC-CcEEEEEecCCCCCCChhhhCCC--Ccce
Q 006535 420 AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSN-SAVIVLGATNRSDVLDPALRRPG--RFDR 496 (641)
Q Consensus 420 A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~-~~ViVIaATN~pd~LD~ALlRpg--RFd~ 496 (641)
. ....+|+||++..... + ...+.++...++..... ..++|+.+|.....+...+.+-. .++
T Consensus 252 ~--~~~DlVLIDTaGr~~~----------~---~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~- 315 (388)
T PRK12723 252 S--KDFDLVLVDTIGKSPK----------D---FMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYK- 315 (388)
T ss_pred h--CCCCEEEEcCCCCCcc----------C---HHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCC-
Confidence 3 3456999999865421 1 11234444444433322 46788888877766665553311 233
Q ss_pred EEEecCCCHHHHHH
Q 006535 497 VVMVETPDKIGREA 510 (641)
Q Consensus 497 ~I~v~~Pd~~eR~e 510 (641)
.+-+...|...+.-
T Consensus 316 ~~I~TKlDet~~~G 329 (388)
T PRK12723 316 TVIFTKLDETTCVG 329 (388)
T ss_pred EEEEEeccCCCcch
Confidence 44566666655544
No 300
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.38 E-value=0.00019 Score=81.87 Aligned_cols=63 Identities=27% Similarity=0.370 Sum_probs=44.0
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc-CCCeEEeeh
Q 006535 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSA 398 (641)
Q Consensus 330 tf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el-g~pfi~vs~ 398 (641)
-|+|+.|++++++.+-+.+ +.. ...++ ....-++|.||||+|||+||++||..+ ..|++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l---~~A--a~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYF---RHA--AQGLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHH---HHH--HHhcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 4889999999988766544 211 11111 233568899999999999999999865 346665544
No 301
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.37 E-value=0.0018 Score=67.23 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=23.5
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCC
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV 391 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elg~ 391 (641)
+..++|.||+|+|||+|++.+++....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 445999999999999999999987754
No 302
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.37 E-value=0.00073 Score=67.60 Aligned_cols=67 Identities=25% Similarity=0.499 Sum_probs=41.9
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHh-----cCCCe-------------EEeehhhHHH----HHhhcchHHHHHHHHHHHhc
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGE-----AEVPF-------------ISCSASEFVE----LYVGMGASRVRDLFARAKKE 423 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e-----lg~pf-------------i~vs~se~~~----~~vG~~~~~vr~lF~~A~~~ 423 (641)
+-++|.||+|+|||+|.|.++.. .|.++ ..+...+-+. .+. ....++.++++.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~-~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFY-AELRRLKEIVEKAKKG 104 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHH-HHHHHHHHHHHhccCC
Confidence 56899999999999999999863 34322 1111111111 111 1124566677666555
Q ss_pred CCceEEEcch
Q 006535 424 APSIIFIDEI 433 (641)
Q Consensus 424 aP~ILfIDEI 433 (641)
.|.++++||.
T Consensus 105 ~p~llllDEp 114 (199)
T cd03283 105 EPVLFLLDEI 114 (199)
T ss_pred CCeEEEEecc
Confidence 7899999996
No 303
>PRK10536 hypothetical protein; Provisional
Probab=97.35 E-value=0.0011 Score=69.02 Aligned_cols=45 Identities=27% Similarity=0.358 Sum_probs=31.9
Q ss_pred ccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHh
Q 006535 330 TFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (641)
Q Consensus 330 tf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~e 388 (641)
.+..+.+.......+...+. +. .-+++.||+|||||+||.++|.+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~---~~-----------~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIE---SK-----------QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCccccCCCHHHHHHHHHHh---cC-----------CeEEEECCCCCCHHHHHHHHHHH
Confidence 44456666666655554432 21 25999999999999999999885
No 304
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.35 E-value=0.00077 Score=73.98 Aligned_cols=73 Identities=25% Similarity=0.307 Sum_probs=44.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcC-----CCeEEeehhhH-------HHHH---------hhcchHHHH---HHHHHHH--
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSASEF-------VELY---------VGMGASRVR---DLFARAK-- 421 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elg-----~pfi~vs~se~-------~~~~---------vG~~~~~vr---~lF~~A~-- 421 (641)
.||+||||+|||+|++.|++... +..+.+-..+. .... ......+++ ..++.|+
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998663 22222222221 1111 111222333 3344443
Q ss_pred --hcCCceEEEcchhhhhhhc
Q 006535 422 --KEAPSIIFIDEIDAVAKSR 440 (641)
Q Consensus 422 --~~aP~ILfIDEIDaL~~~r 440 (641)
.+...+||||||+.+.+..
T Consensus 252 ~e~G~dVlL~iDsItR~arAq 272 (416)
T PRK09376 252 VEHGKDVVILLDSITRLARAY 272 (416)
T ss_pred HHcCCCEEEEEEChHHHHHHH
Confidence 2356799999999997654
No 305
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.35 E-value=0.00043 Score=75.78 Aligned_cols=111 Identities=18% Similarity=0.336 Sum_probs=61.7
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhc----C-CCeEEeehhhH-------HHH---Hhhc------chHHHHHHHHHHH
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA----E-VPFISCSASEF-------VEL---YVGM------GASRVRDLFARAK 421 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el----g-~pfi~vs~se~-------~~~---~vG~------~~~~vr~lF~~A~ 421 (641)
..+..++|+||+|+|||+++..+|..+ | ..+..+....+ +.. ..|. ....+...+..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-- 212 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-- 212 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH--
Confidence 445679999999999999999999863 3 23444443332 111 1111 11122222222
Q ss_pred hcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCC-CCcEEEEEecCCCCCCChhhh
Q 006535 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS-NSAVIVLGATNRSDVLDPALR 489 (641)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~-~~~ViVIaATN~pd~LD~ALl 489 (641)
.....+|+||...... . ...+.+.+..+..... ...++|+.+|+..+.++..+.
T Consensus 213 l~~~DlVLIDTaG~~~----------~----d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQ----------R----DRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred hcCCCEEEEcCCCCCc----------c----cHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 2345799999974321 1 1223344444433332 345788888888877765543
No 306
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.33 E-value=0.0011 Score=66.77 Aligned_cols=97 Identities=24% Similarity=0.246 Sum_probs=57.7
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc----CCCeEEeehhhHHH----H----------Hhh---------------
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVE----L----------YVG--------------- 407 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el----g~pfi~vs~se~~~----~----------~vG--------------- 407 (641)
|.+.+..+|+.||||||||+|+..++.+. |-+.++++..+-.+ . +..
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 56677789999999999999999876533 77777776432211 1 000
Q ss_pred ----cchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhc
Q 006535 408 ----MGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (641)
Q Consensus 408 ----~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd 464 (641)
.....+..+.+......+++++||-+..+. ... ........+..|...+.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~~------~~~~~r~~l~~l~~~l~ 148 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LYD------DPEELRRFLRALIKFLK 148 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TSS------SGGGHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hcC------CHHHHHHHHHHHHHHHH
Confidence 011122333344455678999999999992 221 22334455666666654
No 307
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.33 E-value=0.00077 Score=68.10 Aligned_cols=116 Identities=20% Similarity=0.213 Sum_probs=65.0
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---------CCCeEEeehhhH------HHHHh--h---------------c
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEF------VELYV--G---------------M 408 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---------g~pfi~vs~se~------~~~~v--G---------------~ 408 (641)
|.+...-+.|+||||+|||+|+..+|... +...++++..+- ..... + .
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 45666678999999999999999998553 245666665431 11000 0 0
Q ss_pred chHHHHHHH----HHHHhc-CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEec
Q 006535 409 GASRVRDLF----ARAKKE-APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (641)
Q Consensus 409 ~~~~vr~lF----~~A~~~-aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaAT 478 (641)
+...+..++ ...... .+.+|+||-+.++....... .....++.+.+.+++..+..+....++.|+.+.
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn 167 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDG--RGELAERQQHLAKLLRTLKRLADEFNVAVVITN 167 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence 011112222 222344 78899999999886421110 011234445566666666555444556666554
No 308
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.33 E-value=0.00054 Score=68.77 Aligned_cols=116 Identities=20% Similarity=0.170 Sum_probs=65.8
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---C------CCeEEeehhhH------HHHHhh-----------------c
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---E------VPFISCSASEF------VELYVG-----------------M 408 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---g------~pfi~vs~se~------~~~~vG-----------------~ 408 (641)
|.....-+.|+||||+|||+|+..+|... + ...++++..+- ...... .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 45666678999999999999999998753 2 45566665431 110000 0
Q ss_pred chHHHHHHHHHH----HhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEec
Q 006535 409 GASRVRDLFARA----KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (641)
Q Consensus 409 ~~~~vr~lF~~A----~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaAT 478 (641)
....+...+... ....+++|+||-|..+....... .....++.+.+.+++..|..+....++.||.++
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~--~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tn 166 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIG--RGMLAERARLLSQALRKLLRLADKFNVAVVFTN 166 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcC--CchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEE
Confidence 111222223322 24567899999999886532110 001234445566666666655445555665554
No 309
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.32 E-value=0.0054 Score=64.86 Aligned_cols=96 Identities=25% Similarity=0.362 Sum_probs=60.3
Q ss_pred cccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC-----CCeEE-------eehh
Q 006535 333 DVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE-----VPFIS-------CSAS 399 (641)
Q Consensus 333 DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg-----~pfi~-------vs~s 399 (641)
.|.|+.-+++.+-..+.. +.++. -+.|--+=|+|++||||..+++.||+.+. -+++. +.-.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 488999999887666554 55542 34455566889999999999999999752 12211 1111
Q ss_pred hHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhh
Q 006535 400 EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVA 437 (641)
Q Consensus 400 e~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~ 437 (641)
.-++.|-.+-...+++. +.....++.++||+|.|.
T Consensus 157 ~~ie~Yk~eL~~~v~~~---v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGT---VQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHHHHHHHHHH---HHhcCCceEEechhhhcC
Confidence 22233333333333333 344556699999999985
No 310
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.29 E-value=0.0023 Score=65.42 Aligned_cols=39 Identities=31% Similarity=0.388 Sum_probs=30.5
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHh---cCCCeEEeehh
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSAS 399 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~e---lg~pfi~vs~s 399 (641)
|.+++..+|++||||+|||+|+..++.+ .|-+.++++..
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 5677788999999999999999877654 36677666544
No 311
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.28 E-value=0.00099 Score=62.21 Aligned_cols=52 Identities=25% Similarity=0.383 Sum_probs=40.1
Q ss_pred ccccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhc
Q 006535 332 ADVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 332 ~DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (641)
..|.|++-+.+.+-..+.. +.++ ..+.|--+-|+||||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3699999999988776655 5443 23445555689999999999999999974
No 312
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.28 E-value=0.0012 Score=81.23 Aligned_cols=136 Identities=28% Similarity=0.353 Sum_probs=91.6
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH---HH----hhc--chHHHHH-HHHHHHhcCCceEEEcchh
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE---LY----VGM--GASRVRD-LFARAKKEAPSIIFIDEID 434 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~---~~----vG~--~~~~vr~-lF~~A~~~aP~ILfIDEID 434 (641)
.+++||.|.||+|||.|+.|+|++.|-.++.++.++-.+ .+ .++ |+-+.++ -|-.|.+... -|++||+.
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~-WVlLDEiN 1621 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGG-WVLLDEIN 1621 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCC-EEEeehhh
Confidence 467999999999999999999999999999999875433 21 111 2222222 2334444333 88999986
Q ss_pred hhhhhcCCcccccchhHHHHHHHHHHhh--------hc-CCCCCCcEEEEEecCCC------CCCChhhhCCCCcceEEE
Q 006535 435 AVAKSRDGRFRIVSNDEREQTLNQLLTE--------MD-GFDSNSAVIVLGATNRS------DVLDPALRRPGRFDRVVM 499 (641)
Q Consensus 435 aL~~~r~~~~~~~~~~e~~~~LnqLL~e--------md-~~~~~~~ViVIaATN~p------d~LD~ALlRpgRFd~~I~ 499 (641)
... +..-+-+|..|.. +| .|.-..++.|.||-|+. ..|+..++. ||. +|.
T Consensus 1622 LaS------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV~ 1686 (4600)
T COG5271 1622 LAS------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VVK 1686 (4600)
T ss_pred hhH------------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eEE
Confidence 532 1122334555443 32 23445678999998875 478999998 996 788
Q ss_pred ecCCCHHHHHHHHHHHH
Q 006535 500 VETPDKIGREAILKVHV 516 (641)
Q Consensus 500 v~~Pd~~eR~eILk~~l 516 (641)
++....++...|.....
T Consensus 1687 ~d~lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1687 MDGLTTDDITHIANKMY 1703 (4600)
T ss_pred ecccccchHHHHHHhhC
Confidence 88888887777766654
No 313
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.27 E-value=0.00048 Score=64.57 Aligned_cols=39 Identities=31% Similarity=0.659 Sum_probs=31.3
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhh
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~vG 407 (641)
+|+|+|+||+|||++|+.+|..++.+++..+ .+.....+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d--~~~~~~~~ 39 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD--ELIEQRAG 39 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch--HHHHHHcC
Confidence 3899999999999999999999999988554 44444333
No 314
>PTZ00202 tuzin; Provisional
Probab=97.27 E-value=0.017 Score=64.53 Aligned_cols=62 Identities=16% Similarity=0.332 Sum_probs=49.5
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehh
Q 006535 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS 399 (641)
Q Consensus 329 vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~s 399 (641)
-...+.+|.++...+|.+++... ....|+-+.|.||+|||||+|++.++..++.+.+.++..
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~---------d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRL---------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhcc---------CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 34668999999999888887532 223455788999999999999999999999887777654
No 315
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.25 E-value=0.00031 Score=72.89 Aligned_cols=99 Identities=23% Similarity=0.339 Sum_probs=61.7
Q ss_pred CCccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC---eEEeeh-hhH
Q 006535 326 GDTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSA-SEF 401 (641)
Q Consensus 326 ~~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p---fi~vs~-se~ 401 (641)
....+++++.-.....+.+.+++... .+....+++.||+|+|||+++++++.+.... ++.+.. .++
T Consensus 98 ~~~~sle~l~~~~~~~~~~~~~l~~~----------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 98 SKPFSLEDLGESGSIPEEIAEFLRSA----------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp SS--CHCCCCHTHHCHHHHHHHHHHC----------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccccHhhccCchhhHHHHHHHHhhc----------cccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 34568888877766666666665542 1123579999999999999999999977433 333321 111
Q ss_pred HHH------Hh-hcchHHHHHHHHHHHhcCCceEEEcchh
Q 006535 402 VEL------YV-GMGASRVRDLFARAKKEAPSIIFIDEID 434 (641)
Q Consensus 402 ~~~------~v-G~~~~~vr~lF~~A~~~aP~ILfIDEID 434 (641)
.-. +. ........+++..+....|++|+|+||.
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 110 00 1234456788888888999999999984
No 316
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.25 E-value=0.0013 Score=70.36 Aligned_cols=160 Identities=20% Similarity=0.342 Sum_probs=93.4
Q ss_pred cccCChHHHHHHHHHHHH-hcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHH---HhcCCCeEEeehhhHHHH----
Q 006535 333 DVAGVDEAKEELEEIVEF-LRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVA---GEAEVPFISCSASEFVEL---- 404 (641)
Q Consensus 333 DV~G~ee~K~~L~eiv~~-L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA---~elg~pfi~vs~se~~~~---- 404 (641)
.+.|..+..+.+.+++.. ... .....|++.||.|+|||.|..... ++.|-.|+.|....++..
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~---------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILH---------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHh---------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 366777777777777765 211 234679999999999999765443 356777766654322211
Q ss_pred -----------------HhhcchHHHHHHHHHHHh-----cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhh
Q 006535 405 -----------------YVGMGASRVRDLFARAKK-----EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE 462 (641)
Q Consensus 405 -----------------~vG~~~~~vr~lF~~A~~-----~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~e 462 (641)
..|.....+..++...+. ..+.|.++||||.+++.- +.-.+..++..
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~-----------rQtllYnlfDi 164 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS-----------RQTLLYNLFDI 164 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch-----------hhHHHHHHHHH
Confidence 112223333333333322 123244467899876432 11223333333
Q ss_pred hcCCCCCCcEEEEEecCCCCC---CChhhhCCCCcceE-EEecC-CCHHHHHHHHHHHH
Q 006535 463 MDGFDSNSAVIVLGATNRSDV---LDPALRRPGRFDRV-VMVET-PDKIGREAILKVHV 516 (641)
Q Consensus 463 md~~~~~~~ViVIaATN~pd~---LD~ALlRpgRFd~~-I~v~~-Pd~~eR~eILk~~l 516 (641)
-+ ....+|-||+.|.+.+. |...+.+ ||... |++.+ .+..+-.++++..+
T Consensus 165 sq--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 165 SQ--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred Hh--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 22 23567888998887754 4566777 99755 55544 35788888888877
No 317
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.25 E-value=0.00017 Score=69.32 Aligned_cols=59 Identities=29% Similarity=0.459 Sum_probs=36.1
Q ss_pred ccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC---eEEeehhhH
Q 006535 334 VAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP---FISCSASEF 401 (641)
Q Consensus 334 V~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p---fi~vs~se~ 401 (641)
++|.++..++|...+.. . ....++.++|+|++|+|||+|+++++..+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T--------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-H--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 57888877766666641 1 23456789999999999999999988765322 777776554
No 318
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.25 E-value=0.0017 Score=73.03 Aligned_cols=78 Identities=26% Similarity=0.385 Sum_probs=54.5
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHh------hc--------chHHHHHHHHHHHhc
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV------GM--------GASRVRDLFARAKKE 423 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~~v------G~--------~~~~vr~lF~~A~~~ 423 (641)
|..+..-+||+|+||+|||+|+..+|... +.+.++++..+-.+... |. .+..+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 45556678999999999999999997754 45777777654433211 11 122345566666777
Q ss_pred CCceEEEcchhhhhh
Q 006535 424 APSIIFIDEIDAVAK 438 (641)
Q Consensus 424 aP~ILfIDEIDaL~~ 438 (641)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999998854
No 319
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.24 E-value=0.0053 Score=66.74 Aligned_cols=159 Identities=18% Similarity=0.247 Sum_probs=90.1
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH--------
Q 006535 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-------- 404 (641)
Q Consensus 333 DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~-------- 404 (641)
.+.+.+...+.|..++-. + ....|..+.|||..|||||.+.+++-++++.|.+.++|-+....
T Consensus 7 ~v~~Re~qi~~L~~Llg~--~-------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGN--N-------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred CccchHHHHHHHHHHhCC--C-------CcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHH
Confidence 466667666666655421 1 12467788999999999999999999999999999988655331
Q ss_pred --H-----hh----cchHHHHH---HHHH--HHhcC--CceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCC
Q 006535 405 --Y-----VG----MGASRVRD---LFAR--AKKEA--PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGF 466 (641)
Q Consensus 405 --~-----vG----~~~~~vr~---lF~~--A~~~a--P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~ 466 (641)
. .| .....+.+ +|.+ +.... -..|++|.+|.+-.. + ...++.|+..=+-.
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~-~-----------a~ll~~l~~L~el~ 145 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM-D-----------AILLQCLFRLYELL 145 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc-c-----------hHHHHHHHHHHHHh
Confidence 1 00 01122222 2333 22222 347889999998511 1 22344444332212
Q ss_pred CCCCcEEEEEecCCCCCCChhhhCCCCcc-eEEEecCCCHHHHHHHHHHH
Q 006535 467 DSNSAVIVLGATNRSDVLDPALRRPGRFD-RVVMVETPDKIGREAILKVH 515 (641)
Q Consensus 467 ~~~~~ViVIaATN~pd~LD~ALlRpgRFd-~~I~v~~Pd~~eR~eILk~~ 515 (641)
. ...+.+|...-..+ +--+.+-|-++ ..+++|.|+.++.+.|+..-
T Consensus 146 ~-~~~i~iils~~~~e--~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 146 N-EPTIVIILSAPSCE--KQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred C-CCceEEEEeccccH--HHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 2 22333333322211 11112233443 35788999999998887654
No 320
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.23 E-value=0.0015 Score=65.12 Aligned_cols=98 Identities=27% Similarity=0.367 Sum_probs=51.7
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH----HHhhcchHHHHHHHHHHH---------hcCCceEE
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE----LYVGMGASRVRDLFARAK---------KEAPSIIF 429 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~----~~vG~~~~~vr~lF~~A~---------~~aP~ILf 429 (641)
+-.+|.||||||||++++.++..+ +..++.+....-.. ...+.....+..++.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 357889999999999999987643 66666665432211 111222222333322211 12236999
Q ss_pred EcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCC
Q 006535 430 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNR 480 (641)
Q Consensus 430 IDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~ 480 (641)
|||+-.+.. ..+..++..+.. ...++++++-.+.
T Consensus 99 VDEasmv~~---------------~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEASMVDS---------------RQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp ESSGGG-BH---------------HHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred EecccccCH---------------HHHHHHHHHHHh--cCCEEEEECCcch
Confidence 999876632 234555555542 2346777776653
No 321
>PRK13947 shikimate kinase; Provisional
Probab=97.23 E-value=0.0003 Score=67.57 Aligned_cols=31 Identities=39% Similarity=0.615 Sum_probs=28.6
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEee
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg~pfi~vs 397 (641)
+|+|.|+||||||++++.+|..++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999997654
No 322
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.20 E-value=0.0024 Score=69.70 Aligned_cols=28 Identities=36% Similarity=0.617 Sum_probs=24.2
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhc
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (641)
..+|+|++|||.-|||||+|.-.+-..+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 4569999999999999999999887544
No 323
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.20 E-value=0.00048 Score=68.65 Aligned_cols=67 Identities=24% Similarity=0.393 Sum_probs=43.0
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCC----CeEEeeh-hhHHH---------HHhhcchHHHHHHHHHHHhcCCceEEEcc
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEAEV----PFISCSA-SEFVE---------LYVGMGASRVRDLFARAKKEAPSIIFIDE 432 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg~----pfi~vs~-se~~~---------~~vG~~~~~vr~lF~~A~~~aP~ILfIDE 432 (641)
-+++.||+|+|||+++++++++... .++.+.. .++.. ..++.....+.+.+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3789999999999999999887642 2222211 11110 01122223455666777777899999999
Q ss_pred h
Q 006535 433 I 433 (641)
Q Consensus 433 I 433 (641)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 7
No 324
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.20 E-value=0.00095 Score=65.48 Aligned_cols=40 Identities=30% Similarity=0.612 Sum_probs=32.7
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhh
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVG 407 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~vG 407 (641)
.+|+|.|++|+|||++.+++|+.++.+|+..+ ..++...|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D--~~Ie~~~g 42 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD--QEIEKRTG 42 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch--HHHHHHHC
Confidence 46999999999999999999999999998664 34444333
No 325
>PRK05973 replicative DNA helicase; Provisional
Probab=97.19 E-value=0.0025 Score=65.76 Aligned_cols=39 Identities=36% Similarity=0.342 Sum_probs=29.6
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehh
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~s 399 (641)
|..+..-+||.|+||+|||+++-.+|.+. |.+.++++..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 45555679999999999999999887654 6666666543
No 326
>PRK14974 cell division protein FtsY; Provisional
Probab=97.17 E-value=0.0019 Score=69.81 Aligned_cols=73 Identities=25% Similarity=0.313 Sum_probs=44.5
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHH-------HHHh---h----------cchHHHHHHHHHH
Q 006535 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV-------ELYV---G----------MGASRVRDLFARA 420 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~-------~~~v---G----------~~~~~vr~lF~~A 420 (641)
.|.-++|.||||+|||+++..+|..+ +..+..+++..+. ..+. | .....+.+..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 46789999999999999888888754 4555445543221 1110 1 0112234444555
Q ss_pred HhcCCceEEEcchhhh
Q 006535 421 KKEAPSIIFIDEIDAV 436 (641)
Q Consensus 421 ~~~aP~ILfIDEIDaL 436 (641)
+.....+|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 5555668999987554
No 327
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.16 E-value=0.00093 Score=72.33 Aligned_cols=70 Identities=23% Similarity=0.365 Sum_probs=45.9
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCC----CeEEee-hhhHHH---------HHhhcchHHHHHHHHHHHhcCCceEEE
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV----PFISCS-ASEFVE---------LYVGMGASRVRDLFARAKKEAPSIIFI 430 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elg~----pfi~vs-~se~~~---------~~vG~~~~~vr~lF~~A~~~aP~ILfI 430 (641)
...+|+.||+|+|||++++++.+...- .++.+. ..++.. .-+|.......+.++.+....|.+|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 345899999999999999999986642 233332 112210 012222234566677777889999999
Q ss_pred cchh
Q 006535 431 DEID 434 (641)
Q Consensus 431 DEID 434 (641)
||+-
T Consensus 202 gEir 205 (343)
T TIGR01420 202 GEMR 205 (343)
T ss_pred eCCC
Confidence 9983
No 328
>PRK03839 putative kinase; Provisional
Probab=97.16 E-value=0.00034 Score=68.11 Aligned_cols=31 Identities=26% Similarity=0.488 Sum_probs=28.1
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEee
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg~pfi~vs 397 (641)
.|+|.|+||+|||++++.+|..++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999997654
No 329
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.15 E-value=0.0019 Score=66.77 Aligned_cols=38 Identities=26% Similarity=0.249 Sum_probs=29.1
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc----CCCeEEeeh
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSA 398 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el----g~pfi~vs~ 398 (641)
|..+..-++|.||||+|||+++..+|..+ |.+.++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 44556678999999999999999887653 666666654
No 330
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.15 E-value=0.0047 Score=74.26 Aligned_cols=151 Identities=19% Similarity=0.258 Sum_probs=82.6
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehh-------hHHH----HHh----hc-----------c----hHHHHH
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS-------EFVE----LYV----GM-----------G----ASRVRD 415 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~s-------e~~~----~~v----G~-----------~----~~~vr~ 415 (641)
+-++++||+|.|||+++...+...+ ++..++.. .|.. ... +. + ...+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4589999999999999999987766 65544432 1111 110 00 0 011222
Q ss_pred HHHHHHh-cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCC-hhhhCCCC
Q 006535 416 LFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD-PALRRPGR 493 (641)
Q Consensus 416 lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD-~ALlRpgR 493 (641)
++..... ..|.+|+|||+|.+.. ....+.+..|+..+ ..++.+|.++.....++ ..+...
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~~-----------~~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~~~-- 173 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLITN-----------PEIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANLRVR-- 173 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCCC-----------hHHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhHHhc--
Confidence 3333222 5788999999998731 12234455555443 22333333443321222 122111
Q ss_pred cceEEEec----CCCHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCC
Q 006535 494 FDRVVMVE----TPDKIGREAILKVHVSKKELPLAKDIDLGDIASMTTGFT 540 (641)
Q Consensus 494 Fd~~I~v~----~Pd~~eR~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfS 540 (641)
+..+.+. ..+.++-.+++...+. .+++++ +...+.+.|.|+.
T Consensus 174 -~~~~~l~~~~l~f~~~e~~~ll~~~~~---~~~~~~-~~~~l~~~t~Gwp 219 (903)
T PRK04841 174 -DQLLEIGSQQLAFDHQEAQQFFDQRLS---SPIEAA-ESSRLCDDVEGWA 219 (903)
T ss_pred -CcceecCHHhCCCCHHHHHHHHHhccC---CCCCHH-HHHHHHHHhCChH
Confidence 2234455 6688888888876642 344433 5778889999864
No 331
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.15 E-value=0.007 Score=60.68 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=26.4
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elg~pfi 394 (641)
+.-+++.|+||+|||++|+.+|.+++.+++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~~ 32 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDIV 32 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 456899999999999999999999987653
No 332
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.15 E-value=0.00076 Score=65.00 Aligned_cols=105 Identities=21% Similarity=0.207 Sum_probs=60.6
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCC--CeEEeehhhH--------HHHHhh-----cchHHHHHHHHHHHhcCCc
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASEF--------VELYVG-----MGASRVRDLFARAKKEAPS 426 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg~--pfi~vs~se~--------~~~~vG-----~~~~~vr~lF~~A~~~aP~ 426 (641)
..+...+.|.||+|+|||+|.+.+++.... --+.+++.+. ....++ .+..+-+-.+..|....|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 345567899999999999999999987521 1122222111 111111 1123445567777778899
Q ss_pred eEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC
Q 006535 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (641)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~p 481 (641)
++++||-.. +.+....+.+.+++.++.. . +..+|.+|+..
T Consensus 103 illlDEP~~-----------~LD~~~~~~l~~~l~~~~~---~-~~tiii~sh~~ 142 (163)
T cd03216 103 LLILDEPTA-----------ALTPAEVERLFKVIRRLRA---Q-GVAVIFISHRL 142 (163)
T ss_pred EEEEECCCc-----------CCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCH
Confidence 999999632 2333445555666665531 2 23444556554
No 333
>PRK04296 thymidine kinase; Provisional
Probab=97.14 E-value=0.0018 Score=64.14 Aligned_cols=70 Identities=17% Similarity=0.142 Sum_probs=41.0
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeeh--h--hHHH---HHhhcc-----hHHHHHHHHHHH--hcCCceEE
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA--S--EFVE---LYVGMG-----ASRVRDLFARAK--KEAPSIIF 429 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~--s--e~~~---~~vG~~-----~~~vr~lF~~A~--~~aP~ILf 429 (641)
-+|++||||+|||+++..++.++ +...+.+.. . .... ...|.. .....+++..+. ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998888765 555554533 1 1000 001110 112334444443 34567999
Q ss_pred Ecchhhh
Q 006535 430 IDEIDAV 436 (641)
Q Consensus 430 IDEIDaL 436 (641)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999655
No 334
>PRK09354 recA recombinase A; Provisional
Probab=97.14 E-value=0.0017 Score=70.40 Aligned_cols=78 Identities=23% Similarity=0.217 Sum_probs=49.9
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHH-H---------------hhcchHHHHHHHHHHH
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVEL-Y---------------VGMGASRVRDLFARAK 421 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~-~---------------vG~~~~~vr~lF~~A~ 421 (641)
|.+..+-++|+||||||||+|+-.++.+. |...++++..+-.+. + ....++.+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 44555668899999999999999876543 667777765442221 0 0011222222223345
Q ss_pred hcCCceEEEcchhhhhh
Q 006535 422 KEAPSIIFIDEIDAVAK 438 (641)
Q Consensus 422 ~~aP~ILfIDEIDaL~~ 438 (641)
...+.+|+||=+-++.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 56788999999999875
No 335
>PRK13948 shikimate kinase; Provisional
Probab=97.12 E-value=0.001 Score=65.88 Aligned_cols=44 Identities=30% Similarity=0.469 Sum_probs=35.6
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhc
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGM 408 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~vG~ 408 (641)
+++..|+|.|++|+|||++++.+|..++.+|+..+ .+.+...|.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g~ 51 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTGK 51 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHhC
Confidence 45688999999999999999999999999998554 455544443
No 336
>PRK13946 shikimate kinase; Provisional
Probab=97.11 E-value=0.0013 Score=64.71 Aligned_cols=35 Identities=34% Similarity=0.612 Sum_probs=31.3
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeeh
Q 006535 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~ 398 (641)
.++.|+|.|+||+|||++++.+|..+|.+|+..+.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 45679999999999999999999999999987653
No 337
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.11 E-value=0.0024 Score=65.67 Aligned_cols=36 Identities=31% Similarity=0.552 Sum_probs=29.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~ 403 (641)
|+|+|+||+|||++|++++..+ +.+++.++...+.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~ 40 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRE 40 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHH
Confidence 7899999999999999999876 56777777654533
No 338
>PRK00625 shikimate kinase; Provisional
Probab=97.10 E-value=0.00047 Score=67.66 Aligned_cols=31 Identities=39% Similarity=0.641 Sum_probs=28.8
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEee
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg~pfi~vs 397 (641)
.|+|.|.||+|||++++.+|..++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999998765
No 339
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.09 E-value=0.00059 Score=67.19 Aligned_cols=70 Identities=26% Similarity=0.369 Sum_probs=45.8
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhcC--CCeEEeehh-hHHHH-------------HhhcchHHHHHHHHHHHhcCCce
Q 006535 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCSAS-EFVEL-------------YVGMGASRVRDLFARAKKEAPSI 427 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elg--~pfi~vs~s-e~~~~-------------~vG~~~~~vr~lF~~A~~~aP~I 427 (641)
....++|.||+|+|||++++++++... ...+.+... ++... ..+.....+.+++..+....|.+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~ 103 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDR 103 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCE
Confidence 456799999999999999999998753 122222111 11000 00112234667777788888999
Q ss_pred EEEcch
Q 006535 428 IFIDEI 433 (641)
Q Consensus 428 LfIDEI 433 (641)
++++|+
T Consensus 104 i~igEi 109 (186)
T cd01130 104 IIVGEV 109 (186)
T ss_pred EEEEcc
Confidence 999998
No 340
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.09 E-value=0.00052 Score=66.71 Aligned_cols=39 Identities=26% Similarity=0.468 Sum_probs=32.9
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~ 404 (641)
+-++|.|+||+|||++|++++.+++.+++.++...+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~ 41 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA 41 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh
Confidence 468999999999999999999999888887766655443
No 341
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.09 E-value=0.031 Score=59.81 Aligned_cols=132 Identities=17% Similarity=0.166 Sum_probs=68.0
Q ss_pred HHHHHHHHh--c-CCceEEEcchhhhhhhcCCc--ccccchhHHHHHHHHHHhhhcCC-CCCCcEEE--EEecCC---CC
Q 006535 414 RDLFARAKK--E-APSIIFIDEIDAVAKSRDGR--FRIVSNDEREQTLNQLLTEMDGF-DSNSAVIV--LGATNR---SD 482 (641)
Q Consensus 414 r~lF~~A~~--~-aP~ILfIDEIDaL~~~r~~~--~~~~~~~e~~~~LnqLL~emd~~-~~~~~ViV--IaATN~---pd 482 (641)
..++++... . -|.++-||++.++.....=. .....+...-.+...|+..+.+- .-..+.+| +++|.. +.
T Consensus 143 ~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~ 222 (309)
T PF10236_consen 143 QALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPK 222 (309)
T ss_pred HHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccC
Confidence 344444433 2 46677799999998652100 00111222233444444443322 22334444 555532 22
Q ss_pred --CCChhhhCCCC------cc-------------eEEEecCCCHHHHHHHHHHHHhcCCCC--CCCCCCHHHHHHhCCCC
Q 006535 483 --VLDPALRRPGR------FD-------------RVVMVETPDKIGREAILKVHVSKKELP--LAKDIDLGDIASMTTGF 539 (641)
Q Consensus 483 --~LD~ALlRpgR------Fd-------------~~I~v~~Pd~~eR~eILk~~l~~~~l~--l~~dvdl~~LA~~T~Gf 539 (641)
.++.++..... |. ..|.++..+.+|-+.+++.+....-+. ..++.-.+.+...+ |.
T Consensus 223 ~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s-~G 301 (309)
T PF10236_consen 223 SPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSS-NG 301 (309)
T ss_pred CccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhc-CC
Confidence 56666643211 11 267889999999999999988764322 11222233444433 44
Q ss_pred CHHHHHH
Q 006535 540 TGADLAN 546 (641)
Q Consensus 540 SgaDL~~ 546 (641)
+++++..
T Consensus 302 Np~el~k 308 (309)
T PF10236_consen 302 NPRELEK 308 (309)
T ss_pred CHHHhcc
Confidence 7787754
No 342
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.08 E-value=0.0033 Score=64.36 Aligned_cols=70 Identities=23% Similarity=0.361 Sum_probs=44.5
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhc--------CCCeEEeeh-hhHHHHHhhc-------------chHHHHHHHHHHHhc
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEA--------EVPFISCSA-SEFVELYVGM-------------GASRVRDLFARAKKE 423 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~el--------g~pfi~vs~-se~~~~~vG~-------------~~~~vr~lF~~A~~~ 423 (641)
.+.|+.||||||||++.|-+|+-+ +.....++- ++......|. ..-+-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 358999999999999999999854 223333332 2222221221 111223455667889
Q ss_pred CCceEEEcchhh
Q 006535 424 APSIIFIDEIDA 435 (641)
Q Consensus 424 aP~ILfIDEIDa 435 (641)
+|.|+++|||..
T Consensus 218 ~PEViIvDEIGt 229 (308)
T COG3854 218 SPEVIIVDEIGT 229 (308)
T ss_pred CCcEEEEecccc
Confidence 999999999854
No 343
>PLN02674 adenylate kinase
Probab=97.06 E-value=0.0033 Score=65.17 Aligned_cols=40 Identities=20% Similarity=0.488 Sum_probs=31.7
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~ 404 (641)
.++..++|.||||+||+++++.+|...+++.+ +..+++..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~hi--s~GdllR~ 68 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLRA 68 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEE--chhHHHHH
Confidence 44567999999999999999999999986554 55555543
No 344
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.05 E-value=0.002 Score=68.71 Aligned_cols=35 Identities=37% Similarity=0.657 Sum_probs=31.7
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEe
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~v 396 (641)
..++..|+|.|+||+|||++++.+|..+|.+|+.+
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 45677899999999999999999999999999943
No 345
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.05 E-value=0.0041 Score=60.85 Aligned_cols=95 Identities=11% Similarity=0.156 Sum_probs=54.8
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHh--h---------------cchHHHHHHHHHHHhcCCceEE
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV--G---------------MGASRVRDLFARAKKEAPSIIF 429 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~v--G---------------~~~~~vr~lF~~A~~~aP~ILf 429 (641)
-+|+.||||+|||++|..++.+.+.+.+++........-. . +....+..++... ...+.+|+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 4899999999999999999999888877766543211100 0 0011233333221 12356899
Q ss_pred EcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcC
Q 006535 430 IDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDG 465 (641)
Q Consensus 430 IDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~ 465 (641)
||-+..+....-.. ...+.....+..++..+..
T Consensus 82 ID~Lt~~~~n~l~~---~~~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 82 VDCLTTWVTNLLFE---EGEEAIAAEIDALLAALQQ 114 (170)
T ss_pred ehhHHHHHHHHhcc---cchHHHHHHHHHHHHHHHc
Confidence 99999886543110 0002234455566666653
No 346
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.04 E-value=0.0016 Score=65.13 Aligned_cols=131 Identities=25% Similarity=0.370 Sum_probs=66.9
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhc---CCC--eEEeehh-----hHHHHH---hh----------cchHHHHHHHHHHH
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEA---EVP--FISCSAS-----EFVELY---VG----------MGASRVRDLFARAK 421 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el---g~p--fi~vs~s-----e~~~~~---vG----------~~~~~vr~lF~~A~ 421 (641)
|+-++|+||+|+|||+.+-.+|..+ +.. +++.+.. +-+..| .+ .....+++.++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 5679999999999999998888764 333 3443321 111111 11 11223445566665
Q ss_pred hcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhh--CCCCcceEEE
Q 006535 422 KEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALR--RPGRFDRVVM 499 (641)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALl--RpgRFd~~I~ 499 (641)
...-.+|+||-..... .+.+.-+-+..++..+ ....-++|+.++-..+.++.... +...++ .+-
T Consensus 81 ~~~~D~vlIDT~Gr~~----------~d~~~~~el~~~~~~~---~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~-~lI 146 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSP----------RDEELLEELKKLLEAL---NPDEVHLVLSATMGQEDLEQALAFYEAFGID-GLI 146 (196)
T ss_dssp HTTSSEEEEEE-SSSS----------THHHHHHHHHHHHHHH---SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTC-EEE
T ss_pred hcCCCEEEEecCCcch----------hhHHHHHHHHHHhhhc---CCccceEEEecccChHHHHHHHHHhhcccCc-eEE
Confidence 5555699998753221 1222233444455444 23334566666655555553332 212234 344
Q ss_pred ecCCCHHHHH
Q 006535 500 VETPDKIGRE 509 (641)
Q Consensus 500 v~~Pd~~eR~ 509 (641)
+...|...+.
T Consensus 147 lTKlDet~~~ 156 (196)
T PF00448_consen 147 LTKLDETARL 156 (196)
T ss_dssp EESTTSSSTT
T ss_pred EEeecCCCCc
Confidence 5566554443
No 347
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.04 E-value=0.0014 Score=62.85 Aligned_cols=32 Identities=38% Similarity=0.662 Sum_probs=29.0
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEee
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs 397 (641)
.+||+.|-||||||+|+.++|...+.+++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 46999999999999999999999999988764
No 348
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.03 E-value=0.0014 Score=75.36 Aligned_cols=28 Identities=43% Similarity=0.661 Sum_probs=24.9
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHh
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~e 388 (641)
..++...+|+.||+|||||+|.||+|+-
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4567778999999999999999999984
No 349
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.03 E-value=0.0029 Score=65.32 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.5
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHh
Q 006535 364 PPRGVLLVGLPGTGKTLLAKAVAGE 388 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~e 388 (641)
..--|-|.||+|||||||.+.+|+-
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3344889999999999999999984
No 350
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.02 E-value=0.00057 Score=66.36 Aligned_cols=34 Identities=24% Similarity=0.424 Sum_probs=27.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~ 403 (641)
|+++||||+|||++|+.+|.+.+++. ++.++++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHHH
Confidence 78999999999999999999998655 45555544
No 351
>PRK10867 signal recognition particle protein; Provisional
Probab=97.01 E-value=0.0096 Score=66.58 Aligned_cols=74 Identities=23% Similarity=0.388 Sum_probs=46.2
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhc----CCCeEEeehhhHHHH----------------Hh---h-cchHHHHHHH
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVEL----------------YV---G-MGASRVRDLF 417 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el----g~pfi~vs~se~~~~----------------~v---G-~~~~~vr~lF 417 (641)
..+|.-++++||+|+|||+++..+|..+ |.....+++..+... +. + ......++..
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 3457889999999999999887777643 566666666533211 00 0 1122233455
Q ss_pred HHHHhcCCceEEEcchhh
Q 006535 418 ARAKKEAPSIIFIDEIDA 435 (641)
Q Consensus 418 ~~A~~~aP~ILfIDEIDa 435 (641)
..++.....+|+||=.-.
T Consensus 177 ~~a~~~~~DvVIIDTaGr 194 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGR 194 (433)
T ss_pred HHHHhcCCCEEEEeCCCC
Confidence 556666677888887543
No 352
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.01 E-value=0.00055 Score=72.82 Aligned_cols=70 Identities=26% Similarity=0.361 Sum_probs=47.6
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEeeh-hhHH-------HHHhhcchHHHHHHHHHHHhcCCceEEEc
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSA-SEFV-------ELYVGMGASRVRDLFARAKKEAPSIIFID 431 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el-----g~pfi~vs~-se~~-------~~~vG~~~~~vr~lF~~A~~~aP~ILfID 431 (641)
.+++|+.||+|+|||+++++++++. +..++.+.. .++. ............+++..+....|+.|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 3579999999999999999999875 223333321 1111 00111122256788888999999999999
Q ss_pred chh
Q 006535 432 EID 434 (641)
Q Consensus 432 EID 434 (641)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 983
No 353
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.00 E-value=0.0076 Score=60.80 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=30.0
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehh
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~s 399 (641)
|.+...-+++.|+||+|||+++..++.+. +-+.++++..
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 45566779999999999999999887643 6666666653
No 354
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.00 E-value=0.0025 Score=64.61 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=30.4
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc----CCCeEEeeh
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSA 398 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el----g~pfi~vs~ 398 (641)
|..+..-++|.|+||+|||+++..++... +.+.++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 56666779999999999999999887643 777777764
No 355
>PRK14532 adenylate kinase; Provisional
Probab=97.00 E-value=0.00062 Score=66.64 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=29.4
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~ 404 (641)
.|+|.||||+|||++|+.+|...|.+++ +..+++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHH
Confidence 4899999999999999999999987665 45555544
No 356
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.00 E-value=0.0038 Score=63.17 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.6
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHH
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAG 387 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~ 387 (641)
++.++|+||.|+|||++.|.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 36799999999999999999983
No 357
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.97 E-value=0.0048 Score=61.91 Aligned_cols=125 Identities=27% Similarity=0.435 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHHHH
Q 006535 341 KEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARA 420 (641)
Q Consensus 341 K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~vG~~~~~vr~lF~~A 420 (641)
+..|..+|....+| |......++|.|+.|+|||++.+.|+.+ ++.-+.... ....... ..
T Consensus 34 ~~wl~~~Var~~~p------g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~------~~kd~~~----~l 93 (198)
T PF05272_consen 34 RKWLVGAVARAYEP------GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDF------DDKDFLE----QL 93 (198)
T ss_pred HHHHHHHHHHHhCC------CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccC------CCcHHHH----HH
Confidence 34444455544444 4555567889999999999999999666 221111000 0011111 11
Q ss_pred HhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhh-hcCCCC---------CCcEEEEEecCCCCCC-Chhhh
Q 006535 421 KKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTE-MDGFDS---------NSAVIVLGATNRSDVL-DPALR 489 (641)
Q Consensus 421 ~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~e-md~~~~---------~~~ViVIaATN~pd~L-D~ALl 489 (641)
... -|+.+||++.+.+.. ...+..+++. .+.+.. ....++|+|||..+-| |+.=-
T Consensus 94 ~~~--~iveldEl~~~~k~~------------~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGn 159 (198)
T PF05272_consen 94 QGK--WIVELDELDGLSKKD------------VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGN 159 (198)
T ss_pred HHh--HheeHHHHhhcchhh------------HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCC
Confidence 111 289999999875221 1233334433 222211 2357889999998755 33344
Q ss_pred CCCCcceEEEecC
Q 006535 490 RPGRFDRVVMVET 502 (641)
Q Consensus 490 RpgRFd~~I~v~~ 502 (641)
| || ..|.+..
T Consensus 160 R--Rf-~~v~v~~ 169 (198)
T PF05272_consen 160 R--RF-WPVEVSK 169 (198)
T ss_pred e--EE-EEEEEcC
Confidence 5 76 3555544
No 358
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.97 E-value=0.00067 Score=62.88 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=28.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEee
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elg~pfi~vs 397 (641)
|.+.|+||+|||++|+.+|..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998775
No 359
>PRK14531 adenylate kinase; Provisional
Probab=96.96 E-value=0.00079 Score=66.05 Aligned_cols=35 Identities=23% Similarity=0.486 Sum_probs=29.2
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~ 402 (641)
..|+++||||+|||++++.+|...|+++++ ..+++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHH
Confidence 359999999999999999999999987765 44444
No 360
>PRK06217 hypothetical protein; Validated
Probab=96.94 E-value=0.00077 Score=66.06 Aligned_cols=31 Identities=26% Similarity=0.544 Sum_probs=28.2
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEee
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg~pfi~vs 397 (641)
.|+|.|+||+|||++|++++..++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999987654
No 361
>PLN02200 adenylate kinase family protein
Probab=96.92 E-value=0.00099 Score=68.42 Aligned_cols=42 Identities=19% Similarity=0.310 Sum_probs=33.6
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~ 404 (641)
+...|.-++|.||||+|||++|+.+|.++|++ .++.++++..
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~ 80 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRR 80 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHH
Confidence 34566779999999999999999999999865 4566666543
No 362
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.92 E-value=0.001 Score=64.99 Aligned_cols=23 Identities=43% Similarity=0.664 Sum_probs=20.4
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhc
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el 389 (641)
.++|+|+||+||||+++.++.++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999887
No 363
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.90 E-value=0.0087 Score=60.42 Aligned_cols=38 Identities=32% Similarity=0.359 Sum_probs=28.8
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHh---cCCCeEEeeh
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSA 398 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~e---lg~pfi~vs~ 398 (641)
|......++++||||+|||+|+..++.+ .+-+.++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 5666778999999999999999987653 2555555554
No 364
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.90 E-value=0.00082 Score=65.59 Aligned_cols=34 Identities=35% Similarity=0.651 Sum_probs=28.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~ 403 (641)
|+|.||||+|||++|+.+|.+.+++++. .++++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~--~~~l~~ 35 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS--TGDLLR 35 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CcHHHH
Confidence 8999999999999999999998877655 445543
No 365
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.89 E-value=0.013 Score=60.57 Aligned_cols=133 Identities=17% Similarity=0.279 Sum_probs=73.5
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCCC--eEEeehhhH---HHHH-----hhc--chH-----------HHHHHHHH
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSASEF---VELY-----VGM--GAS-----------RVRDLFAR 419 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg~p--fi~vs~se~---~~~~-----vG~--~~~-----------~vr~lF~~ 419 (641)
..|-.+++.|++|||||+|++.+.....-. .+.+-+... ...| +.. ... .+.+....
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 345569999999999999999998765322 122211111 1111 000 000 11111111
Q ss_pred HHh---cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcce
Q 006535 420 AKK---EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDR 496 (641)
Q Consensus 420 A~~---~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~ 496 (641)
... ..+++|++|++-. .....+.+.+++..- ..-++-+|..+...-.||+.++. -.+.
T Consensus 91 ~~~~k~~~~~LiIlDD~~~-------------~~~k~~~l~~~~~~g----RH~~is~i~l~Q~~~~lp~~iR~--n~~y 151 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGD-------------KKLKSKILRQFFNNG----RHYNISIIFLSQSYFHLPPNIRS--NIDY 151 (241)
T ss_pred hcccCCCCCeEEEEeCCCC-------------chhhhHHHHHHHhcc----cccceEEEEEeeecccCCHHHhh--cceE
Confidence 111 2367999999631 011234556666532 23457778788888889999866 5666
Q ss_pred EEEecCCCHHHHHHHHHHH
Q 006535 497 VVMVETPDKIGREAILKVH 515 (641)
Q Consensus 497 ~I~v~~Pd~~eR~eILk~~ 515 (641)
.+-+. -+..+...|++.+
T Consensus 152 ~i~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 152 FIIFN-NSKRDLENIYRNM 169 (241)
T ss_pred EEEec-CcHHHHHHHHHhc
Confidence 66554 4566665555554
No 366
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.89 E-value=0.0011 Score=71.54 Aligned_cols=71 Identities=24% Similarity=0.328 Sum_probs=47.8
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhcC--CCeEEee-hhhHHH-----------H--HhhcchHHHHHHHHHHHhcCCce
Q 006535 364 PPRGVLLVGLPGTGKTLLAKAVAGEAE--VPFISCS-ASEFVE-----------L--YVGMGASRVRDLFARAKKEAPSI 427 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elg--~pfi~vs-~se~~~-----------~--~vG~~~~~vr~lF~~A~~~aP~I 427 (641)
..+++|+.||+|+|||+++++++.+.. ..++.+. ..++.- . -.+...-...++++.+....|+.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 456799999999999999999998763 2222221 111110 0 01122334678888999999999
Q ss_pred EEEcchh
Q 006535 428 IFIDEID 434 (641)
Q Consensus 428 LfIDEID 434 (641)
|++.|+-
T Consensus 239 IivGEiR 245 (332)
T PRK13900 239 IIVGELR 245 (332)
T ss_pred EEEEecC
Confidence 9999984
No 367
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.89 E-value=0.0024 Score=66.73 Aligned_cols=93 Identities=20% Similarity=0.272 Sum_probs=56.5
Q ss_pred cccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCeeEEEcCCCCcHHHHHHHHHHhcC---CCeEEeeh-hhHHHH
Q 006535 329 ITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSA-SEFVEL 404 (641)
Q Consensus 329 vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkgVLL~GPPGTGKT~LAkAlA~elg---~pfi~vs~-se~~~~ 404 (641)
.+++++.-.++..+.|++++. . ....+++.||+|+|||++++++..+.. ..++.+.. .++.-.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~---~----------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~ 123 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE---K----------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP 123 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh---c----------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC
Confidence 457777555555555544442 1 122489999999999999999987653 23444421 111100
Q ss_pred -----Hh-hcchHHHHHHHHHHHhcCCceEEEcchh
Q 006535 405 -----YV-GMGASRVRDLFARAKKEAPSIIFIDEID 434 (641)
Q Consensus 405 -----~v-G~~~~~vr~lF~~A~~~aP~ILfIDEID 434 (641)
.+ ........+.+..+....|++|+++|+.
T Consensus 124 ~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 124 GINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 00 1111235667777888899999999984
No 368
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.88 E-value=0.00088 Score=62.98 Aligned_cols=28 Identities=36% Similarity=0.763 Sum_probs=25.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elg~pfi~ 395 (641)
++|.|+||+|||++|+.++..++.+++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876653
No 369
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.87 E-value=0.0077 Score=62.70 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=29.0
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeeh
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~ 398 (641)
|.+...-++++||||||||+|+..+|.+. |-+.++++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 55666779999999999999999887642 556665554
No 370
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.87 E-value=0.0017 Score=64.06 Aligned_cols=35 Identities=29% Similarity=0.559 Sum_probs=28.1
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~ 403 (641)
.|+|.||||+||||+|+.||+. .++.+++-.++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~r 36 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDILR 36 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHhH
Confidence 4899999999999999999999 5556666555443
No 371
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0029 Score=76.25 Aligned_cols=75 Identities=25% Similarity=0.368 Sum_probs=61.0
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhc-CCCeEEeehhhHHHHH-hhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcC
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASEFVELY-VGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRD 441 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el-g~pfi~vs~se~~~~~-vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~ 441 (641)
.+++.|+.|.|-+.+..||-+.+ +.+......+.++... .......+..+|.+|+...||||||-++|.......
T Consensus 594 ~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~p 670 (1080)
T KOG0732|consen 594 RLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVIP 670 (1080)
T ss_pred HHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcCc
Confidence 38889999999999999998876 6677666666665543 455667788999999999999999999999876553
No 372
>PRK13764 ATPase; Provisional
Probab=96.86 E-value=0.0015 Score=75.59 Aligned_cols=69 Identities=20% Similarity=0.342 Sum_probs=41.4
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcC---CCeEEee-hhhH-----HHHHhhcchHHHHHHHHHHHhcCCceEEEcchh
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCS-ASEF-----VELYVGMGASRVRDLFARAKKEAPSIIFIDEID 434 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elg---~pfi~vs-~se~-----~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEID 434 (641)
..++|++||||+||||++++++.++. ..+..+. ..++ ...+... ..........+....|++|++||+-
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~-~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKL-EGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeec-cccHHHHHHHHHhhCCCEEEECCCC
Confidence 46799999999999999999998764 2222221 1111 1111000 0112233333456789999999964
No 373
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.86 E-value=0.0074 Score=59.41 Aligned_cols=119 Identities=16% Similarity=0.130 Sum_probs=64.3
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCC-------------CeEEeehhhHHHHHh------h------cchHHHHHH
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-------------PFISCSASEFVELYV------G------MGASRVRDL 416 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg~-------------pfi~vs~se~~~~~v------G------~~~~~vr~l 416 (641)
..++.-+.|.||+|+|||+|.++++...|- ++.++.-.+++..+- . .+..+.+-.
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~ 97 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVK 97 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHH
Confidence 344556889999999999999999743321 122222112222211 0 012234455
Q ss_pred HHHHHhcC--CceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCc
Q 006535 417 FARAKKEA--PSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRF 494 (641)
Q Consensus 417 F~~A~~~a--P~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRF 494 (641)
+..|.... |.++++||--. +.+....+.+.+++..+. . .+..||.+|+.++. .+ ..
T Consensus 98 laral~~~~~p~llLlDEPt~-----------~LD~~~~~~l~~~l~~~~---~-~g~tvIivSH~~~~-----~~--~~ 155 (176)
T cd03238 98 LASELFSEPPGTLFILDEPST-----------GLHQQDINQLLEVIKGLI---D-LGNTVILIEHNLDV-----LS--SA 155 (176)
T ss_pred HHHHHhhCCCCCEEEEeCCcc-----------cCCHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHH-----HH--hC
Confidence 66666778 89999999633 123333444444555442 1 23345556665432 22 35
Q ss_pred ceEEEecC
Q 006535 495 DRVVMVET 502 (641)
Q Consensus 495 d~~I~v~~ 502 (641)
|+.+.+..
T Consensus 156 d~i~~l~~ 163 (176)
T cd03238 156 DWIIDFGP 163 (176)
T ss_pred CEEEEECC
Confidence 66666643
No 374
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.85 E-value=0.0011 Score=67.82 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=29.3
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEee
Q 006535 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs 397 (641)
.|..|+|.||||+|||++|+.+|...+++++++.
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 3455999999999999999999999998877653
No 375
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.85 E-value=0.0072 Score=59.14 Aligned_cols=95 Identities=15% Similarity=0.105 Sum_probs=54.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhH-----HHH---H---------hhcchHHHHHHHHHHHhcCCceEEE
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEF-----VEL---Y---------VGMGASRVRDLFARAKKEAPSIIFI 430 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~-----~~~---~---------vG~~~~~vr~lF~~A~~~aP~ILfI 430 (641)
+|+.|++|+|||++|..++.+.+.+.+++....- ... . ..+....+.+.+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 6899999999999999999887777777754322 111 0 0112223333332221 4669999
Q ss_pred cchhhhhhhcCCcccccchhHHHHHHHHHHhhhc
Q 006535 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMD 464 (641)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd 464 (641)
|-+..+....-........+...+.+..|+..+.
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~ 113 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVR 113 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHH
Confidence 9998887554211000000222345556666665
No 376
>PHA02624 large T antigen; Provisional
Probab=96.85 E-value=0.0028 Score=72.80 Aligned_cols=205 Identities=17% Similarity=0.148 Sum_probs=103.8
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhc
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSR 440 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r 440 (641)
|.+..+.+||+||||||||+++.+++..++-..+.++++.-... |...-.....+++||++-.-.-..
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeecccccccc
Confidence 34445589999999999999999999999666777875432222 111111112267777764322100
Q ss_pred CC-cccccchhHHHHHHHHHHhhhcCC-C-------CCC-c---EEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHH
Q 006535 441 DG-RFRIVSNDEREQTLNQLLTEMDGF-D-------SNS-A---VIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIG 507 (641)
Q Consensus 441 ~~-~~~~~~~~e~~~~LnqLL~emd~~-~-------~~~-~---ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~e 507 (641)
.. ..+.+.+ -+.-|-..+||. . .+. . --.|.|||. ..|+..+.- ||..++.|..-
T Consensus 495 ~~Lp~G~~~d-----Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~k---- 562 (647)
T PHA02624 495 KDLPSGQGMN-----NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKPK---- 562 (647)
T ss_pred ccCCcccccc-----hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhcccccc----
Confidence 00 0000000 012233334443 0 000 0 123447775 467777776 88888777432
Q ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcchhhhhccCC
Q 006535 508 REAILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEKKTAKLK 587 (641)
Q Consensus 508 R~eILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~rvi~g~~~~~~~l~ 587 (641)
..++..+++. +.+--..| .. +|--| .+++-.. -..++|.+.+...+...
T Consensus 563 --~~l~~sL~~~-----~~l~~~Ri--lq---sg~tl------LllLIw~-----~pv~~F~~~Iq~~V~~w-------- 611 (647)
T PHA02624 563 --PYLKKSLKKN-----EYLLEKRI--LQ---SGETL------LLLLIWY-----RPVEDFAEEIQEKVVTW-------- 611 (647)
T ss_pred --HHHHHHHhcC-----HHHHHHHH--hc---cHHHH------HHHHHHh-----CCHHHHHHHHHHHHHHH--------
Confidence 1233333221 01100111 11 22222 1111111 13455666665443221
Q ss_pred hhHHHHHHHHHhHHHHHHhHHhhcCCCCCceeeEeee
Q 006535 588 GSEKAVVARHEAGHAVVGTAVASLLPGQPRVEVKDWR 624 (641)
Q Consensus 588 ~~ek~~va~hEaghAlv~~~l~~~~~~~~~v~kiti~ 624 (641)
| -+.-+|++....+.....+..|.++++++-+.
T Consensus 612 ---K-e~L~~ev~~~~f~~m~~Nv~~G~d~~~~~~~~ 644 (647)
T PHA02624 612 ---K-ERLDKEVSDTTFATMKENIHEGKDPLEKIVEE 644 (647)
T ss_pred ---H-HHHHHHhhHHHHHHHHHHHHcCCCcccccccc
Confidence 1 13347788888877777888999999987654
No 377
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.84 E-value=0.0015 Score=69.63 Aligned_cols=74 Identities=22% Similarity=0.406 Sum_probs=48.5
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhcCC--CeEEeeh-hhHHH-------HH-----hhcchHHHHHHHHHHHhcCC
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSA-SEFVE-------LY-----VGMGASRVRDLFARAKKEAP 425 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~elg~--pfi~vs~-se~~~-------~~-----vG~~~~~vr~lF~~A~~~aP 425 (641)
-.....++++.||+|+|||+|++++++.... ..+.+.. .++.- .. .+...-.+.+++..+....|
T Consensus 140 ~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~p 219 (308)
T TIGR02788 140 AIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRP 219 (308)
T ss_pred HhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCC
Confidence 3455678999999999999999999987632 2222211 11100 00 01112345678888888999
Q ss_pred ceEEEcchh
Q 006535 426 SIIFIDEID 434 (641)
Q Consensus 426 ~ILfIDEID 434 (641)
.+|++||+-
T Consensus 220 d~ii~gE~r 228 (308)
T TIGR02788 220 DRIILGELR 228 (308)
T ss_pred CeEEEeccC
Confidence 999999984
No 378
>PRK04328 hypothetical protein; Provisional
Probab=96.83 E-value=0.012 Score=60.90 Aligned_cols=38 Identities=29% Similarity=0.389 Sum_probs=28.9
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHh---cCCCeEEeeh
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSA 398 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~e---lg~pfi~vs~ 398 (641)
|.++...+|++||||||||+|+..++.+ .|-+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 4566777999999999999999887654 3556666654
No 379
>PRK14530 adenylate kinase; Provisional
Probab=96.83 E-value=0.0011 Score=66.58 Aligned_cols=35 Identities=29% Similarity=0.502 Sum_probs=29.3
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~ 403 (641)
.|+|.||||+|||++++.+|..++++++.+ .+++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~--g~~lr 39 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT--GDALR 39 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec--cHHHH
Confidence 599999999999999999999999877654 44443
No 380
>PRK06696 uridine kinase; Validated
Probab=96.83 E-value=0.0017 Score=65.70 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=33.9
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHH
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~ 402 (641)
..|.-|.+.|++|+|||+||+.|+..+ |.+.+.++..+|.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 346678899999999999999999988 7788887777664
No 381
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.83 E-value=0.00095 Score=63.72 Aligned_cols=28 Identities=36% Similarity=0.642 Sum_probs=24.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elg~pfi~ 395 (641)
++|.||||+|||++|+.+++.++.+++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999876653
No 382
>PRK04040 adenylate kinase; Provisional
Probab=96.83 E-value=0.0088 Score=59.41 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=26.6
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhc--CCCeEE
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEA--EVPFIS 395 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el--g~pfi~ 395 (641)
|+-++++|+||+|||++++.++.++ +.+++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~ 34 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVN 34 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEe
Confidence 4569999999999999999999998 666543
No 383
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.83 E-value=0.0089 Score=67.74 Aligned_cols=78 Identities=26% Similarity=0.257 Sum_probs=54.4
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHh------h--------c--------------c
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV------G--------M--------------G 409 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~~v------G--------~--------------~ 409 (641)
|..+...+|+.||||+|||+|+-.++.+. |-+.++++..+-.+.+. | . .
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 45666779999999999999999998754 55666666543322111 1 0 1
Q ss_pred hHHHHHHHHHHHhcCCceEEEcchhhhhh
Q 006535 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAK 438 (641)
Q Consensus 410 ~~~vr~lF~~A~~~aP~ILfIDEIDaL~~ 438 (641)
...+..+.+......|.+|+||-+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 33455566667777899999999998753
No 384
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.82 E-value=0.0042 Score=73.67 Aligned_cols=118 Identities=19% Similarity=0.149 Sum_probs=65.8
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHh---cCCCeEEeehhhHHHH----Hhh------------cchHHHHHHHHHHH
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE---AEVPFISCSASEFVEL----YVG------------MGASRVRDLFARAK 421 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~e---lg~pfi~vs~se~~~~----~vG------------~~~~~vr~lF~~A~ 421 (641)
|.....-++|+||||||||+|+..++.+ .|-+.++++..+-... -.| ..+..+..+-...+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 4555667899999999999999765543 3566666665442220 001 11222222222234
Q ss_pred hcCCceEEEcchhhhhhhcCCccccc--chhHHHHHHHHHHhhhcCCCCCCcEEEEEec
Q 006535 422 KEAPSIIFIDEIDAVAKSRDGRFRIV--SNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (641)
Q Consensus 422 ~~aP~ILfIDEIDaL~~~r~~~~~~~--~~~e~~~~LnqLL~emd~~~~~~~ViVIaAT 478 (641)
...+.+|+||-+.++....+-....+ ......+.++++|..|..+....++.+|.+-
T Consensus 136 ~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 136 SGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred cCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 55788999999999985221100001 1123344456666666655445566666554
No 385
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.81 E-value=0.008 Score=66.32 Aligned_cols=72 Identities=17% Similarity=0.139 Sum_probs=44.3
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHH----H---HH---------hhcchHHHHHHHHHHHh-c
Q 006535 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV----E---LY---------VGMGASRVRDLFARAKK-E 423 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~----~---~~---------vG~~~~~vr~lF~~A~~-~ 423 (641)
.|+.++|.||+|+|||+++..+|..+ +..+..++++.+. + .| +......+.+.+..+.. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 46789999999999999999999865 3344444443221 1 11 11234455555555543 2
Q ss_pred CCceEEEcchhh
Q 006535 424 APSIIFIDEIDA 435 (641)
Q Consensus 424 aP~ILfIDEIDa 435 (641)
...+||||-.-.
T Consensus 320 ~~DvVLIDTaGR 331 (436)
T PRK11889 320 RVDYILIDTAGK 331 (436)
T ss_pred CCCEEEEeCccc
Confidence 346888887533
No 386
>PRK06547 hypothetical protein; Provisional
Probab=96.81 E-value=0.0013 Score=64.47 Aligned_cols=35 Identities=31% Similarity=0.374 Sum_probs=30.2
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEee
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs 397 (641)
..+.-|++.|++|+|||++|+.++..+++++++.+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 45667899999999999999999999998877653
No 387
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.81 E-value=0.0014 Score=71.18 Aligned_cols=73 Identities=25% Similarity=0.352 Sum_probs=48.5
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCC--CeEEeeh-hhHHH------------HHhhcchHHHHHHHHHHHhcCCc
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSA-SEFVE------------LYVGMGASRVRDLFARAKKEAPS 426 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg~--pfi~vs~-se~~~------------~~vG~~~~~vr~lF~~A~~~aP~ 426 (641)
.+..+++|+.||+|+|||+++++++++... ..+.+.. .++.- ...+.+.-...+++..+....|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD 238 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPD 238 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCC
Confidence 345578999999999999999999997632 2222211 11110 00112223466788888889999
Q ss_pred eEEEcchh
Q 006535 427 IIFIDEID 434 (641)
Q Consensus 427 ILfIDEID 434 (641)
.|++.|+-
T Consensus 239 ~IivGEiR 246 (344)
T PRK13851 239 RILLGEMR 246 (344)
T ss_pred eEEEEeeC
Confidence 99999973
No 388
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.80 E-value=0.0046 Score=58.90 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=30.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE 403 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~ 403 (641)
++|+|+||+|||++|+.++..+ +.+.+.++...+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 6899999999999999999987 66777777665543
No 389
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.79 E-value=0.0059 Score=57.75 Aligned_cols=71 Identities=30% Similarity=0.476 Sum_probs=43.1
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCC--eEEeehh---hHHHHHhhcchHHHHHHHHHHHhcCCceEEEcchh
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSAS---EFVELYVGMGASRVRDLFARAKKEAPSIIFIDEID 434 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg~p--fi~vs~s---e~~~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEID 434 (641)
..+...+.|.||+|+|||+|++++++..... -+.+++. .++..+. .+ .+-+-.+..|....|.++++||-.
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS-~G-~~~rv~laral~~~p~illlDEP~ 98 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLS-GG-EKMRLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCC-HH-HHHHHHHHHHHhcCCCEEEEeCCc
Confidence 3455678999999999999999999975210 0111110 0000011 11 233444566667789999999964
No 390
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.78 E-value=0.003 Score=63.53 Aligned_cols=29 Identities=41% Similarity=0.665 Sum_probs=26.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEe
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elg~pfi~v 396 (641)
|+++||||+|||++|+.+|...+++.+++
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 89999999999999999999999777664
No 391
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.77 E-value=0.0087 Score=74.18 Aligned_cols=135 Identities=21% Similarity=0.263 Sum_probs=89.7
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehh------hHHHHHhhcchH---HHHHHHHHHHhcCCceEEEcchhhh
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSAS------EFVELYVGMGAS---RVRDLFARAKKEAPSIIFIDEIDAV 436 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~s------e~~~~~vG~~~~---~vr~lF~~A~~~aP~ILfIDEIDaL 436 (641)
-.+||.||..+|||.+++.+|.+.|-.|+.++.. +++..|+..... --..++-.|..... -|++||+...
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~Gy-WIVLDELNLA 967 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGY-WIVLDELNLA 967 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCc-EEEeeccccC
Confidence 3599999999999999999999999999999764 333344432211 11234555555544 8899998543
Q ss_pred hhhcCCcccccchhHHHHHHHHHHhhhcC---------CCCCCcEEEEEecCCCC------CCChhhhCCCCcceEEEec
Q 006535 437 AKSRDGRFRIVSNDEREQTLNQLLTEMDG---------FDSNSAVIVLGATNRSD------VLDPALRRPGRFDRVVMVE 501 (641)
Q Consensus 437 ~~~r~~~~~~~~~~e~~~~LnqLL~emd~---------~~~~~~ViVIaATN~pd------~LD~ALlRpgRFd~~I~v~ 501 (641)
. ...-+.+|.||..-.. ..+...+.+.||-|+|. .|..|++. ||- .++|+
T Consensus 968 p------------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFl-E~hFd 1032 (4600)
T COG5271 968 P------------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFL-EMHFD 1032 (4600)
T ss_pred c------------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhH-hhhcc
Confidence 2 1223456666654222 12345788888889873 56777777 885 55666
Q ss_pred CCCHHHHHHHHHHHH
Q 006535 502 TPDKIGREAILKVHV 516 (641)
Q Consensus 502 ~Pd~~eR~eILk~~l 516 (641)
.-..++...||+..+
T Consensus 1033 dipedEle~ILh~rc 1047 (4600)
T COG5271 1033 DIPEDELEEILHGRC 1047 (4600)
T ss_pred cCcHHHHHHHHhccC
Confidence 666778888887654
No 392
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.77 E-value=0.0039 Score=65.44 Aligned_cols=39 Identities=23% Similarity=0.438 Sum_probs=29.8
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL 404 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~ 404 (641)
+.-++|.|+||||||++|+.++.++. .++.++..++...
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~~ 40 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQS 40 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHHH
Confidence 34588999999999999999999983 3455565556544
No 393
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.76 E-value=0.0014 Score=63.86 Aligned_cols=34 Identities=26% Similarity=0.538 Sum_probs=30.4
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeeh
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA 398 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~ 398 (641)
+..|+|.||+|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4569999999999999999999999999987654
No 394
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.76 E-value=0.0028 Score=69.50 Aligned_cols=68 Identities=24% Similarity=0.352 Sum_probs=45.8
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcC-----CCeEEeehh-hHH-----------HHHhhcchHHHHHHHHHHHhcCCceEE
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEAE-----VPFISCSAS-EFV-----------ELYVGMGASRVRDLFARAKKEAPSIIF 429 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg-----~pfi~vs~s-e~~-----------~~~vG~~~~~vr~lF~~A~~~aP~ILf 429 (641)
.+|++||+|+|||+++++++++.. ...+.+.-. ++. ...+|.......+.+..+....|++|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 589999999999999999988762 334444211 211 111222223455677778888999999
Q ss_pred Ecchh
Q 006535 430 IDEID 434 (641)
Q Consensus 430 IDEID 434 (641)
+.|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99984
No 395
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.75 E-value=0.0014 Score=63.00 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=28.6
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEee
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs 397 (641)
..++|.|++|+|||++++.+|..+|.+|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35899999999999999999999999998553
No 396
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.75 E-value=0.0029 Score=63.78 Aligned_cols=22 Identities=50% Similarity=0.853 Sum_probs=21.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~el 389 (641)
++|.|+||+|||++|+-+|.++
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 7899999999999999999987
No 397
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.74 E-value=0.014 Score=71.96 Aligned_cols=178 Identities=21% Similarity=0.271 Sum_probs=97.8
Q ss_pred CCCCCeeEEEcCCCCcHHHH-HHHHHHhcCCCeEEeehhhHHHHHhhcchHHHHHHHHHHHhcC---------C------
Q 006535 362 ARPPRGVLLVGLPGTGKTLL-AKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEA---------P------ 425 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~L-AkAlA~elg~pfi~vs~se~~~~~vG~~~~~vr~lF~~A~~~a---------P------ 425 (641)
...-++++++||||+|||+| .-++-.+.-+.++.+|-+.-. .++..++ .+++-...- |
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~ls-~Ler~t~yy~~tg~~~l~PK~~vK~ 1564 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKLS-VLERETEYYPNTGVVRLYPKPVVKD 1564 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHHH-HHHhhceeeccCCeEEEccCcchhh
Confidence 34567999999999999996 456777777778777754221 1112222 222221111 1
Q ss_pred ceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCC--------CCcEEEEEecCCCCCCC-----hhhhCCC
Q 006535 426 SIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDS--------NSAVIVLGATNRSDVLD-----PALRRPG 492 (641)
Q Consensus 426 ~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~--------~~~ViVIaATN~pd~LD-----~ALlRpg 492 (641)
-|||.|||. |...+. +. ..+. --.+.+| .+-+|+-. -.++++.+++|++.+.. ..++|
T Consensus 1565 lVLFcDeIn-Lp~~~~--y~--~~~v-I~FlR~l-~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r-- 1635 (3164)
T COG5245 1565 LVLFCDEIN-LPYGFE--YY--PPTV-IVFLRPL-VERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIR-- 1635 (3164)
T ss_pred eEEEeeccC-Cccccc--cC--CCce-EEeeHHH-HHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhc--
Confidence 299999998 433221 10 0000 0011111 12233322 24799999999985432 33333
Q ss_pred CcceEEEecCCCHHHHHHHHHHHHhcCCCCCCCC------------CCH--------HHHHHhCCCCCHHHHHHHHHHHH
Q 006535 493 RFDRVVMVETPDKIGREAILKVHVSKKELPLAKD------------IDL--------GDIASMTTGFTGADLANLVNEAA 552 (641)
Q Consensus 493 RFd~~I~v~~Pd~~eR~eILk~~l~~~~l~l~~d------------vdl--------~~LA~~T~GfSgaDL~~Lv~eAa 552 (641)
+ ...+.+..|.......|....+..--+ +-++ +.+ ..-.+..-||+|+||...+..-.
T Consensus 1636 ~-~v~vf~~ype~~SL~~Iyea~l~~s~l-~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~ 1713 (3164)
T COG5245 1636 K-PVFVFCCYPELASLRNIYEAVLMGSYL-CFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIF 1713 (3164)
T ss_pred C-ceEEEecCcchhhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHH
Confidence 1 235788899999998888876643211 1111 000 00112335899999999887655
Q ss_pred HHHH
Q 006535 553 LLAG 556 (641)
Q Consensus 553 l~A~ 556 (641)
-.|.
T Consensus 1714 ~yae 1717 (3164)
T COG5245 1714 GYAE 1717 (3164)
T ss_pred hHHh
Confidence 5543
No 398
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.74 E-value=0.0025 Score=60.97 Aligned_cols=35 Identities=37% Similarity=0.583 Sum_probs=25.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~ 403 (641)
|.|+|+||||||+|+++++.. |.+++.-.+..+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~~ 36 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREIIE 36 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHHH
Confidence 789999999999999999998 88887555555544
No 399
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.73 E-value=0.0072 Score=58.42 Aligned_cols=73 Identities=29% Similarity=0.390 Sum_probs=44.0
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCC-----------CeEEee---------hhhHHHH-Hh--hcchHHHHHHHH
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEV-----------PFISCS---------ASEFVEL-YV--GMGASRVRDLFA 418 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg~-----------pfi~vs---------~se~~~~-~v--G~~~~~vr~lF~ 418 (641)
..+..-+.|.||+|+|||+|++.+++.... .+.++. ..+.+.. .. -.+-.+-+-.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~la 103 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFA 103 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHH
Confidence 345566899999999999999999997521 011111 1111100 00 012233445566
Q ss_pred HHHhcCCceEEEcchh
Q 006535 419 RAKKEAPSIIFIDEID 434 (641)
Q Consensus 419 ~A~~~aP~ILfIDEID 434 (641)
.|....|.++++||-.
T Consensus 104 ral~~~p~~lllDEPt 119 (166)
T cd03223 104 RLLLHKPKFVFLDEAT 119 (166)
T ss_pred HHHHcCCCEEEEECCc
Confidence 6777889999999964
No 400
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.73 E-value=0.0059 Score=65.30 Aligned_cols=117 Identities=17% Similarity=0.158 Sum_probs=64.5
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---------CCCeEEeehhhH------HHHH--hhcch-------------
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEF------VELY--VGMGA------------- 410 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---------g~pfi~vs~se~------~~~~--vG~~~------------- 410 (641)
|.+.+.-++|+||||+|||.|+..+|..+ +...++++..+- .+.. .|...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 45666778899999999999999998653 235666665441 1100 01000
Q ss_pred ------HHHHHHHHHHHh-cCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006535 411 ------SRVRDLFARAKK-EAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 411 ------~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN 479 (641)
..+..+...... ..+.+|+||=|-++....-.. .+...++.+.+.+++..+..+....++.||.++.
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVG--RGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccC--CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 001111122223 456799999999886532110 1122233454666666555444455566666654
No 401
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.72 E-value=0.015 Score=64.59 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=26.6
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhc----CCCeEEeehh
Q 006535 364 PPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSAS 399 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el----g~pfi~vs~s 399 (641)
.+.-++|.||+|+|||+++..+|.+. |.....+++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D 261 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD 261 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc
Confidence 45568899999999999999999754 3344444443
No 402
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.71 E-value=0.0059 Score=65.50 Aligned_cols=116 Identities=18% Similarity=0.187 Sum_probs=64.0
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---------CCCeEEeehhhH------HHHH--hhc---------------
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASEF------VELY--VGM--------------- 408 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---------g~pfi~vs~se~------~~~~--vG~--------------- 408 (641)
|.....-+.|+||||+|||.|+..+|-.. +...++++..+- .+.. .+.
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 45556668899999999999999877422 345666664431 1100 011
Q ss_pred chHHHHHHHH----HHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEec
Q 006535 409 GASRVRDLFA----RAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (641)
Q Consensus 409 ~~~~vr~lF~----~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaAT 478 (641)
......+++. ......+.+|+||-|-++....-.+ .+.-.++.+.+.+++..|..+....++.||.+.
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~--~g~~~~r~~~l~~~~~~L~~la~~~~vavvitN 243 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG--RGELSERQQKLAQMLSRLNKISEEFNVAVFVTN 243 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC--ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEEC
Confidence 0111112222 2234567899999999886542111 112233344566666666555545556666553
No 403
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.71 E-value=0.0042 Score=59.09 Aligned_cols=73 Identities=30% Similarity=0.417 Sum_probs=44.4
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCCC--eEEeehhhHH-------HHHhh-----cchHHHHHHHHHHHhcCCceE
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVP--FISCSASEFV-------ELYVG-----MGASRVRDLFARAKKEAPSII 428 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg~p--fi~vs~se~~-------~~~vG-----~~~~~vr~lF~~A~~~aP~IL 428 (641)
.+...+.|.||+|+|||+|++++++..... -+.+++.... ...++ .+-...+-.+..+....|.++
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEE
Confidence 344568999999999999999999976321 1233322111 00011 111233444566666778899
Q ss_pred EEcchhh
Q 006535 429 FIDEIDA 435 (641)
Q Consensus 429 fIDEIDa 435 (641)
++||...
T Consensus 103 ilDEp~~ 109 (157)
T cd00267 103 LLDEPTS 109 (157)
T ss_pred EEeCCCc
Confidence 9999753
No 404
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.71 E-value=0.008 Score=63.88 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=63.3
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---------CCCeEEeehhh------HHHHH--hhcch-------------
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE------FVELY--VGMGA------------- 410 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---------g~pfi~vs~se------~~~~~--vG~~~------------- 410 (641)
|...+.-++++||||+|||+|+-.+|..+ +...++++..+ +.+.. .+...
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~ 170 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAY 170 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecC
Confidence 45556668899999999999999998763 23667776544 11100 01100
Q ss_pred ---H---HHHHHHHHHHhc--CCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEec
Q 006535 411 ---S---RVRDLFARAKKE--APSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (641)
Q Consensus 411 ---~---~vr~lF~~A~~~--aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaAT 478 (641)
. .+..+.+..... .+.+|+||-|-++....-.+ .+...++.+.+.+++..+..+....++.|+.+.
T Consensus 171 ~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~--~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tn 244 (310)
T TIGR02236 171 NSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVG--RGALAERQQKLNKHLHDLLRLADLYNAAVVVTN 244 (310)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcC--chhHHHHHHHHHHHHHHHHHHHHHhCcEEEEec
Confidence 0 112222233333 36789999988875432110 111223345566665655544445556666554
No 405
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.70 E-value=0.0051 Score=66.65 Aligned_cols=23 Identities=48% Similarity=0.606 Sum_probs=21.2
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhc
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el 389 (641)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 406
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.70 E-value=0.0018 Score=69.61 Aligned_cols=70 Identities=23% Similarity=0.332 Sum_probs=46.5
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEee-hhhHHH------HHhhcchHHHHHHHHHHHhcCCceEEEcc
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCS-ASEFVE------LYVGMGASRVRDLFARAKKEAPSIIFIDE 432 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el-----g~pfi~vs-~se~~~------~~vG~~~~~vr~lF~~A~~~aP~ILfIDE 432 (641)
.+++++.|++|+|||+++++++.+. ...++.+. ..++.- .+.....-...++++.+....|+.|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 4679999999999999999999863 12222221 111110 00011223467888899999999999999
Q ss_pred hh
Q 006535 433 ID 434 (641)
Q Consensus 433 ID 434 (641)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 83
No 407
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.69 E-value=0.0063 Score=59.03 Aligned_cols=27 Identities=30% Similarity=0.604 Sum_probs=23.1
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhc
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (641)
.+..-+.|.||+|+|||+|.+.+++..
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 344568999999999999999999964
No 408
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.68 E-value=0.014 Score=57.30 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=23.3
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHh
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~e 388 (641)
..+.-.++|.||+||||++|.|++|.-
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhc
Confidence 345566999999999999999999984
No 409
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.68 E-value=0.0048 Score=61.32 Aligned_cols=43 Identities=28% Similarity=0.482 Sum_probs=33.5
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhc-CCCeEEeehhhHHHHH
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA-EVPFISCSASEFVELY 405 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el-g~pfi~vs~se~~~~~ 405 (641)
..|.-+++.|+||+|||+++..+..++ +-.++.++..++....
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH 56 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc
Confidence 567889999999999999999999988 7788889988875543
No 410
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.66 E-value=0.018 Score=54.42 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=18.3
Q ss_pred CeeEEEcCCCCcHHH-HHHHHHHhc
Q 006535 366 RGVLLVGLPGTGKTL-LAKAVAGEA 389 (641)
Q Consensus 366 kgVLL~GPPGTGKT~-LAkAlA~el 389 (641)
+.+++.||+|+|||. ++..+....
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 469999999999999 555554443
No 411
>PRK13695 putative NTPase; Provisional
Probab=96.65 E-value=0.013 Score=56.80 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.5
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhc
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el 389 (641)
.++|.|++|+|||+|++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988764
No 412
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.64 E-value=0.005 Score=66.30 Aligned_cols=70 Identities=27% Similarity=0.286 Sum_probs=47.2
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcch-----H---HHHH---HHHHHHhcCCceEEEcchh
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGA-----S---RVRD---LFARAKKEAPSIIFIDEID 434 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~vG~~~-----~---~vr~---lF~~A~~~aP~ILfIDEID 434 (641)
+.+.|.|+||+|||+|++++++..+.+++.-.+.++.....+... . .+.. ....+...++.+||+|- +
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~~~~~~~~a~~iif~D~-~ 241 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRYIDYAVRHAHKIAFIDT-D 241 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCeEEEcC-C
Confidence 469999999999999999999999999987777766654321110 0 1111 12333344567999995 4
Q ss_pred hh
Q 006535 435 AV 436 (641)
Q Consensus 435 aL 436 (641)
.+
T Consensus 242 ~~ 243 (325)
T TIGR01526 242 FI 243 (325)
T ss_pred hH
Confidence 44
No 413
>PRK13808 adenylate kinase; Provisional
Probab=96.64 E-value=0.011 Score=64.01 Aligned_cols=34 Identities=24% Similarity=0.485 Sum_probs=28.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~ 403 (641)
|+|+||||+|||++++.||..++++.++ ..+++.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is--~gdlLR 36 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLS--TGDMLR 36 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceec--ccHHHH
Confidence 8999999999999999999999875554 455543
No 414
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.63 E-value=0.0018 Score=62.76 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=27.6
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHH
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV 402 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~ 402 (641)
-+++.||||+|||++++.++.++|.+.+ +..+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~--~~g~~~ 38 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHL--STGDLL 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE--eHHHHH
Confidence 4889999999999999999999886654 444443
No 415
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.62 E-value=0.0054 Score=59.38 Aligned_cols=28 Identities=32% Similarity=0.451 Sum_probs=24.3
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhc
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (641)
..+...+.|.||+|+|||+|.+.+++..
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3455679999999999999999999975
No 416
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.61 E-value=0.006 Score=60.75 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.0
Q ss_pred CeeEEEcCCCCcHHHHHHHHHH
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAG 387 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~ 387 (641)
.-++|.||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4599999999999999999994
No 417
>PRK14528 adenylate kinase; Provisional
Probab=96.61 E-value=0.0019 Score=63.77 Aligned_cols=30 Identities=33% Similarity=0.604 Sum_probs=27.2
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEe
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg~pfi~v 396 (641)
.+++.||||+|||++++.+|...+++.+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 489999999999999999999999887664
No 418
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.61 E-value=0.024 Score=64.48 Aligned_cols=39 Identities=31% Similarity=0.371 Sum_probs=29.9
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc----CCCeEEeehh
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSAS 399 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el----g~pfi~vs~s 399 (641)
|.++..-+||+|+||+|||+|+..++.+. |-+.++++..
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~e 69 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFE 69 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence 45666779999999999999999876532 5677666654
No 419
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.61 E-value=0.017 Score=56.21 Aligned_cols=28 Identities=25% Similarity=0.515 Sum_probs=24.2
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhc
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (641)
..++..+.|.||+|+|||+|++.+++..
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3455679999999999999999999974
No 420
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.60 E-value=0.0085 Score=57.83 Aligned_cols=32 Identities=38% Similarity=0.422 Sum_probs=26.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehh
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~s 399 (641)
+++.||||+|||+++..+|..+ +.....++++
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 7899999999999999998764 5666666665
No 421
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.60 E-value=0.015 Score=62.60 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=27.8
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeeh
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSA 398 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~ 398 (641)
..|.-++|.||+|+|||+++..+|..+ +..+..+.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 456779999999999999999999865 344444444
No 422
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.59 E-value=0.0017 Score=63.01 Aligned_cols=28 Identities=36% Similarity=0.692 Sum_probs=26.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elg~pfi~ 395 (641)
|-+.||||||||++|+.+|..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6688999999999999999999999986
No 423
>PRK14527 adenylate kinase; Provisional
Probab=96.58 E-value=0.0019 Score=63.67 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=28.7
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEe
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~v 396 (641)
+.|.-+++.||||+|||++|+.+|.+.+.+.++.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 3566799999999999999999999998765543
No 424
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.58 E-value=0.027 Score=64.07 Aligned_cols=157 Identities=24% Similarity=0.258 Sum_probs=79.8
Q ss_pred cccCChHHHHHHHHHHHHhcChhHHhhhC--CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEe-ehhhHH------H
Q 006535 333 DVAGVDEAKEELEEIVEFLRSPDKYIRLG--ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISC-SASEFV------E 403 (641)
Q Consensus 333 DV~G~ee~K~~L~eiv~~L~~p~~~~~lg--~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~v-s~se~~------~ 403 (641)
.|.|.+.+|+.+.-++-- .-++--.-| .+---+|||.|.|-+.|+-|.|.+.+.+..-+-.. .++.=+ .
T Consensus 302 SI~GH~~vKkAillLLlG--GvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLG--GVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhc--cceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 488999999877654432 111111112 23345699999999999999999988652211110 000000 0
Q ss_pred HHhhcchHHHHH-HHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC
Q 006535 404 LYVGMGASRVRD-LFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD 482 (641)
Q Consensus 404 ~~vG~~~~~vr~-lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd 482 (641)
.-...+++++.. ..-.|. ..|++|||+|.+..-. ....++..+|.-..+-..--.-.-+.+.-|+||.|+..
T Consensus 380 tD~eTGERRLEAGAMVLAD---RGVVCIDEFDKMsDiD----RvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvy 452 (818)
T KOG0479|consen 380 TDQETGERRLEAGAMVLAD---RGVVCIDEFDKMSDID----RVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVY 452 (818)
T ss_pred eccccchhhhhcCceEEcc---CceEEehhcccccchh----HHHHHHHHhcceEEeEeccchhhhccceeeeeecCccc
Confidence 001123333321 011111 3499999999984211 01111111111000000000012245678999999742
Q ss_pred -------------CCChhhhCCCCcceEEEe
Q 006535 483 -------------VLDPALRRPGRFDRVVMV 500 (641)
Q Consensus 483 -------------~LD~ALlRpgRFd~~I~v 500 (641)
.|+..|++ |||..+.+
T Consensus 453 G~Yd~~k~P~eNIgLpDSLLS--RFDLlFv~ 481 (818)
T KOG0479|consen 453 GQYDQSKTPMENIGLPDSLLS--RFDLLFVV 481 (818)
T ss_pred cccCCCCChhhccCCcHHHHh--hhcEEEEE
Confidence 56788998 99976544
No 425
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.58 E-value=0.013 Score=57.76 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=18.5
Q ss_pred eEEEcCCCCcHHHHHHHHHH
Q 006535 368 VLLVGLPGTGKTLLAKAVAG 387 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~ 387 (641)
++|+||.|+|||++.|.++.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999983
No 426
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.57 E-value=0.0064 Score=64.14 Aligned_cols=37 Identities=22% Similarity=0.184 Sum_probs=28.7
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhc----C-CCeEEeehhh
Q 006535 364 PPRGVLLVGLPGTGKTLLAKAVAGEA----E-VPFISCSASE 400 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el----g-~pfi~vs~se 400 (641)
.+..++|.||+|+|||+++..+|..+ + ..+..+++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 46679999999999999999998765 3 5555565544
No 427
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.57 E-value=0.011 Score=58.95 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.4
Q ss_pred CeeEEEcCCCCcHHHHHHHHH
Q 006535 366 RGVLLVGLPGTGKTLLAKAVA 386 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA 386 (641)
+.++|.||.|+|||+|.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999998
No 428
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.57 E-value=0.014 Score=65.20 Aligned_cols=36 Identities=25% Similarity=0.196 Sum_probs=27.0
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEeehhh
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCSASE 400 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el-----g~pfi~vs~se 400 (641)
++.++|.||+|+|||+++..+|..+ +..+..+++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 5678999999999999988887643 34555555544
No 429
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.57 E-value=0.0064 Score=66.03 Aligned_cols=116 Identities=20% Similarity=0.170 Sum_probs=63.7
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---------CCCeEEeehhh------HHHHH--hhcc--------------
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE------FVELY--VGMG-------------- 409 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---------g~pfi~vs~se------~~~~~--vG~~-------------- 409 (641)
|.....-..|+||||||||.|+..+|-.. +...++++... +.... .|..
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 45555668899999999999999887432 23556665533 11110 0110
Q ss_pred -hH----HHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEec
Q 006535 410 -AS----RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (641)
Q Consensus 410 -~~----~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaAT 478 (641)
.. .+..+-.......+.+|+||-|-++....-.+ .+...++.+.+.+++..|..+....++.||.+.
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~--rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvTN 273 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTG--RGELAERQQKLAQMLSRLTKIAEEFNVAVYMTN 273 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccC--ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 01 11122222334568899999999886542111 112234445566666666555444555555543
No 430
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.56 E-value=0.042 Score=61.46 Aligned_cols=73 Identities=23% Similarity=0.362 Sum_probs=45.9
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhc----CCCeEEeehhhHHHH-------H---h-------h--cc-hHHHHHHHH
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA----EVPFISCSASEFVEL-------Y---V-------G--MG-ASRVRDLFA 418 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el----g~pfi~vs~se~~~~-------~---v-------G--~~-~~~vr~lF~ 418 (641)
..|.-++++||+|+|||+++..+|..+ |.....+++..+... + . + .. .....+.++
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 457889999999999999988887653 556666666533210 0 0 0 01 122345555
Q ss_pred HHHhcCCceEEEcchhh
Q 006535 419 RAKKEAPSIIFIDEIDA 435 (641)
Q Consensus 419 ~A~~~aP~ILfIDEIDa 435 (641)
.+......+|+||=.-.
T Consensus 177 ~~~~~~~DvVIIDTaGr 193 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGR 193 (428)
T ss_pred HHHhcCCCEEEEeCCCc
Confidence 56566667888887533
No 431
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.56 E-value=0.002 Score=64.50 Aligned_cols=34 Identities=35% Similarity=0.652 Sum_probs=28.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~ 403 (641)
|+|.||||+|||++|+.+|...|++.++ ..+++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHHH
Confidence 7999999999999999999999877665 444443
No 432
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.56 E-value=0.0075 Score=58.46 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=31.2
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcC---CCeEEeehhhHHH
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAE---VPFISCSASEFVE 403 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg---~pfi~vs~se~~~ 403 (641)
..|.-++|.|+||+|||++|++++..+. ...+.++...+..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~ 48 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE 48 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh
Confidence 3566799999999999999999999875 2345566655543
No 433
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.55 E-value=0.0061 Score=64.57 Aligned_cols=68 Identities=21% Similarity=0.368 Sum_probs=47.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcC----CCeEEe---------ehhhHH-HHHhhcchHHHHHHHHHHHhcCCceEEEcch
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEAE----VPFISC---------SASEFV-ELYVGMGASRVRDLFARAKKEAPSIIFIDEI 433 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elg----~pfi~v---------s~se~~-~~~vG~~~~~vr~lF~~A~~~aP~ILfIDEI 433 (641)
||+.||.|+|||+...++..+.+ .+.+.+ +-..++ ...+|.....+...++.|....|+||++-|+
T Consensus 128 ILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlvGEm 207 (353)
T COG2805 128 ILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILVGEM 207 (353)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEecc
Confidence 77889999999999999888764 233333 222222 2345666666667777788889999999998
Q ss_pred hh
Q 006535 434 DA 435 (641)
Q Consensus 434 Da 435 (641)
-.
T Consensus 208 RD 209 (353)
T COG2805 208 RD 209 (353)
T ss_pred cc
Confidence 44
No 434
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.55 E-value=0.005 Score=58.25 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=28.6
Q ss_pred EEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHh
Q 006535 370 LVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (641)
Q Consensus 370 L~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~v 406 (641)
|.||||+|||++|+.||.+.+. ..++..+++....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHHHH
Confidence 6899999999999999999875 5666777766544
No 435
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.55 E-value=0.016 Score=57.73 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=30.4
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHh
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYV 406 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~v 406 (641)
-|.|+|++|+|||++++.++...|.+++ ++.++.....
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~~~~~ 40 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYAREAL 40 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHHHHHH
Confidence 3889999999999999999998888887 4555554433
No 436
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.55 E-value=0.0036 Score=67.37 Aligned_cols=69 Identities=23% Similarity=0.308 Sum_probs=46.8
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhc-----CCCeEEee-hhhHHHH------HhhcchHHHHHHHHHHHhcCCceEEEcc
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEA-----EVPFISCS-ASEFVEL------YVGMGASRVRDLFARAKKEAPSIIFIDE 432 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~el-----g~pfi~vs-~se~~~~------~vG~~~~~vr~lF~~A~~~aP~ILfIDE 432 (641)
.+++|+.|++|+|||+++++++.+. +..++.+. ..++.-. +.....-...++++.+....|+.|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4579999999999999999999875 22333332 1122100 0011223467788888889999999999
Q ss_pred h
Q 006535 433 I 433 (641)
Q Consensus 433 I 433 (641)
+
T Consensus 224 i 224 (323)
T PRK13833 224 V 224 (323)
T ss_pred c
Confidence 8
No 437
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.55 E-value=0.0063 Score=67.36 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=33.4
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006535 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~ 403 (641)
..+.|.|.|++|||||+|+++||...|.+.+.--+.++..
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~ 257 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVF 257 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHH
Confidence 4567999999999999999999999998877665555554
No 438
>PRK02496 adk adenylate kinase; Provisional
Probab=96.54 E-value=0.0022 Score=62.65 Aligned_cols=30 Identities=33% Similarity=0.583 Sum_probs=26.5
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEe
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg~pfi~v 396 (641)
-+++.||||+|||++++.+|..++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 389999999999999999999998776654
No 439
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.53 E-value=0.02 Score=64.93 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=30.5
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHh----cCCCeEEeehh
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSAS 399 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~e----lg~pfi~vs~s 399 (641)
|..+...+|+.||||||||+||..++.+ .|-+.++++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 5667788999999999999999988543 25677776644
No 440
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.48 E-value=0.0083 Score=59.11 Aligned_cols=72 Identities=24% Similarity=0.224 Sum_probs=43.1
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCC--CeEEeehhh--HHHHHh-hcchHHHHHHHHHHHhcCCceEEEcchh
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSASE--FVELYV-GMGASRVRDLFARAKKEAPSIIFIDEID 434 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg~--pfi~vs~se--~~~~~v-G~~~~~vr~lF~~A~~~aP~ILfIDEID 434 (641)
.+..-+.|.||+|+|||+|++.+++.... --+.+++.. +..... -.+..+-+-.+..+....|.++++||--
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 34456889999999999999999996421 011222110 000000 1112234455666677789999999963
No 441
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.47 E-value=0.0043 Score=60.86 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=28.7
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~ 403 (641)
-++++|.||||||++++.++ ++|.+.++++ +|..
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~--el~~ 35 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN--ELAK 35 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH--HHHH
Confidence 38899999999999999999 9998887765 5543
No 442
>PTZ00035 Rad51 protein; Provisional
Probab=96.44 E-value=0.011 Score=63.91 Aligned_cols=115 Identities=18% Similarity=0.208 Sum_probs=63.6
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhcC---------CCeEEeehhh------HHHHH--hhc---------------
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSASE------FVELY--VGM--------------- 408 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~elg---------~pfi~vs~se------~~~~~--vG~--------------- 408 (641)
|.....-+.|+||||+|||+|+..++.... ...++++... +.... .+.
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 455566688999999999999999985432 3445555432 11110 000
Q ss_pred c-hH---HHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEe
Q 006535 409 G-AS---RVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGA 477 (641)
Q Consensus 409 ~-~~---~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaA 477 (641)
. +. .+..+........+.+|+||-|-++....-.+ .+...++.+.+.+++..+..+....++.|+.+
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~--~~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSG--RGELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccC--cccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 0 11 11111222234567899999999986542110 11223445556777666665544555666644
No 443
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.42 E-value=0.0022 Score=57.66 Aligned_cols=22 Identities=41% Similarity=0.721 Sum_probs=20.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~el 389 (641)
|+|.|+||+|||++|+.++.++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 444
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.42 E-value=0.004 Score=63.17 Aligned_cols=132 Identities=25% Similarity=0.313 Sum_probs=59.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHH-HhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccc
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVEL-YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRI 446 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~-~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~ 446 (641)
++|+||+|||||.+|-++|++.|.|++..+.-..... .+|.+ +....-+ ...+ =+||||-..--
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sg-rp~~~el----~~~~-RiyL~~r~l~~--------- 68 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSG-RPTPSEL----KGTR-RIYLDDRPLSD--------- 68 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT----SGGG----TT-E-EEES----GGG---------
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccC-CCCHHHH----cccc-eeeeccccccC---------
Confidence 7899999999999999999999999999886544332 22322 1111111 1112 37788643211
Q ss_pred cchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhC---CCCcce-EEEecCCCHHHHHHHHHHHHh
Q 006535 447 VSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRR---PGRFDR-VVMVETPDKIGREAILKVHVS 517 (641)
Q Consensus 447 ~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlR---pgRFd~-~I~v~~Pd~~eR~eILk~~l~ 517 (641)
+.-..++....|+..++.+....++|+=+-+.. .|..-..+ ...|.. ...++.||.+.-..-.+...+
T Consensus 69 -G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSIS--Ll~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~ 140 (233)
T PF01745_consen 69 -GIINAEEAHERLISEVNSYSAHGGLILEGGSIS--LLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVR 140 (233)
T ss_dssp --S--HHHHHHHHHHHHHTTTTSSEEEEEE--HH--HHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHH
T ss_pred -CCcCHHHHHHHHHHHHHhccccCceEEeCchHH--HHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHH
Confidence 112224455667777777777555555444421 11100111 013333 335567777655544444443
No 445
>PHA02774 E1; Provisional
Probab=96.41 E-value=0.0045 Score=70.85 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=28.0
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCCCeEE-eeh
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFIS-CSA 398 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~-vs~ 398 (641)
.++++|+||||||||++|-+|++.++...+. +|.
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 3589999999999999999999998655544 553
No 446
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.40 E-value=0.016 Score=56.62 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=27.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHH
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELY 405 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~ 405 (641)
|.|+|++|+|||++++.++. +|++++. +.++....
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~--~D~~~~~~ 36 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVID--ADKIAHEV 36 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEe--cCHHHHhh
Confidence 68999999999999999998 7877654 45555443
No 447
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.40 E-value=0.027 Score=59.19 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=28.7
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehh
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS 399 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~s 399 (641)
...|+-++|.||+|+|||+++..+|..+ |....-+++.
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3457789999999999999999998765 4445445443
No 448
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.39 E-value=0.0097 Score=57.70 Aligned_cols=27 Identities=33% Similarity=0.324 Sum_probs=23.2
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhc
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (641)
.+...+.|.||+|+|||+|++.+++..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568999999999999999999964
No 449
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.39 E-value=0.0078 Score=68.27 Aligned_cols=95 Identities=19% Similarity=0.293 Sum_probs=58.7
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCe-eEEEcCCCCcHHHHHHHHHHhcC---CCeEEeehh-hH
Q 006535 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRG-VLLVGLPGTGKTLLAKAVAGEAE---VPFISCSAS-EF 401 (641)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkg-VLL~GPPGTGKT~LAkAlA~elg---~pfi~vs~s-e~ 401 (641)
...+++++.-.++..+.+++++. .+.| +|++||+|+|||++.+++..++. ..++.+... ++
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~--------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIR--------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 34577887666666666666552 2334 78999999999999998887763 334444221 11
Q ss_pred HHHHhhc------chHHHHHHHHHHHhcCCceEEEcchhh
Q 006535 402 VELYVGM------GASRVRDLFARAKKEAPSIIFIDEIDA 435 (641)
Q Consensus 402 ~~~~vG~------~~~~vr~lF~~A~~~aP~ILfIDEIDa 435 (641)
.-...++ ...........+....|+||++.||-.
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 1000010 012334556666778999999999843
No 450
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.39 E-value=0.012 Score=64.02 Aligned_cols=117 Identities=15% Similarity=0.196 Sum_probs=66.6
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---------CCCeEEeehhh------HHHHH--hhc---------------
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---------EVPFISCSASE------FVELY--VGM--------------- 408 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---------g~pfi~vs~se------~~~~~--vG~--------------- 408 (641)
|.....-++++|+||+|||.|+..+|-.+ +.+.++++..+ +.+.. .+.
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 44555668899999999999999887432 12566666544 11110 000
Q ss_pred chHHHHHHH----HHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecC
Q 006535 409 GASRVRDLF----ARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATN 479 (641)
Q Consensus 409 ~~~~vr~lF----~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN 479 (641)
....+..++ .......+.+|+||=|-++......+ .+...++.+.+.+++..|..+....++.||.+..
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~--~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNq 271 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSG--RGELSARQMHLGKFLRSLQRLADEFGVAVVITNQ 271 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 011111122 22344568899999999987542111 1122344455777777776655555666665543
No 451
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.38 E-value=0.011 Score=69.82 Aligned_cols=70 Identities=26% Similarity=0.311 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhh
Q 006535 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALR 489 (641)
Q Consensus 410 ~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALl 489 (641)
-++-|-.+..|.-..|.||++||.=+ .-+.+.++.+.+-|.++... ..+|..|.|+.. .
T Consensus 613 GQrQrlalARaLl~~P~ILlLDEaTS-----------aLD~~sE~~I~~~L~~~~~~-----~T~I~IaHRl~t-----i 671 (709)
T COG2274 613 GQRQRLALARALLSKPKILLLDEATS-----------ALDPETEAIILQNLLQILQG-----RTVIIIAHRLST-----I 671 (709)
T ss_pred HHHHHHHHHHHhccCCCEEEEeCccc-----------ccCHhHHHHHHHHHHHHhcC-----CeEEEEEccchH-----h
Confidence 34445566667778899999999632 23455566666666665421 244555666533 3
Q ss_pred CCCCcceEEEecC
Q 006535 490 RPGRFDRVVMVET 502 (641)
Q Consensus 490 RpgRFd~~I~v~~ 502 (641)
+ +.|+.+.++.
T Consensus 672 ~--~adrIiVl~~ 682 (709)
T COG2274 672 R--SADRIIVLDQ 682 (709)
T ss_pred h--hccEEEEccC
Confidence 3 5666665543
No 452
>PRK14700 recombination factor protein RarA; Provisional
Probab=96.38 E-value=0.03 Score=59.49 Aligned_cols=106 Identities=18% Similarity=0.301 Sum_probs=71.3
Q ss_pred CCcEEEEEec--CCCCCCChhhhCCCCcceEEEecCCCHHHHHHHHHHHHhcC------CCCCCCCCCHHHHHHhCCCCC
Q 006535 469 NSAVIVLGAT--NRSDVLDPALRRPGRFDRVVMVETPDKIGREAILKVHVSKK------ELPLAKDIDLGDIASMTTGFT 540 (641)
Q Consensus 469 ~~~ViVIaAT--N~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~eILk~~l~~~------~l~l~~dvdl~~LA~~T~GfS 540 (641)
++.|++|+|| |+.-.+.++|++ |. +++.+.+++.++...+++..+... .+.++++ .++.|+..+.| .
T Consensus 6 ~G~i~LIGATTENP~f~vn~ALlS--R~-~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~-al~~ia~~a~G-D 80 (300)
T PRK14700 6 SGKIILIGATTENPTYYLNDALVS--RL-FILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDG-LYNAMHNYNEG-D 80 (300)
T ss_pred CCcEEEEeecCCCccceecHhhhh--hh-heeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHH-HHHHHHHhcCC-H
Confidence 5678889887 666799999999 54 488999999999999999988642 1333333 36677777665 3
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcch
Q 006535 541 GADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGI 579 (641)
Q Consensus 541 gaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~rvi~g~ 579 (641)
.+-.-|+++.|...+...+...||.+++.+.+.+.....
T Consensus 81 aR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~y 119 (300)
T PRK14700 81 CRKILNLLERMFLISTRGDEIYLNKELFDQAVGETSRDF 119 (300)
T ss_pred HHHHHHHHHHHHhhccccCCCccCHHHHHHHHhHHHhcc
Confidence 344444555444322222223489999999887665433
No 453
>PF13479 AAA_24: AAA domain
Probab=96.37 E-value=0.0054 Score=61.83 Aligned_cols=68 Identities=24% Similarity=0.341 Sum_probs=39.6
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCCCe-EEeehhhH-HHH------HhhcchHHHHHHHHHHH--hcCCceEEEcchh
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPF-ISCSASEF-VEL------YVGMGASRVRDLFARAK--KEAPSIIFIDEID 434 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elg~pf-i~vs~se~-~~~------~vG~~~~~vr~lF~~A~--~~aP~ILfIDEID 434 (641)
+-.++||||||+|||++|..+ +-|+ +.+..+.. +.. +.-.+-..+.+.+..+. ...-.+|+||.++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 446999999999999999887 3333 22222210 000 00113444555555432 2344599999888
Q ss_pred hh
Q 006535 435 AV 436 (641)
Q Consensus 435 aL 436 (641)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 75
No 454
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.37 E-value=0.0076 Score=64.68 Aligned_cols=116 Identities=15% Similarity=0.161 Sum_probs=62.9
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhcC---------CCeEEeehhhH------HHHH--hhcc--------------
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSASEF------VELY--VGMG-------------- 409 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~elg---------~pfi~vs~se~------~~~~--vG~~-------------- 409 (641)
|..+..-+.++||||+|||+|+..+|..+. ...++++..+- .... .+..
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 455666788999999999999999886321 24566655441 1100 0100
Q ss_pred -hHH----HHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEec
Q 006535 410 -ASR----VRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGAT 478 (641)
Q Consensus 410 -~~~----vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaAT 478 (641)
... +..+........+.+|+||-|-++......+ .+....+...+.+++..+..+....++.|+.+.
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~--~~~~~~rq~~l~~~~~~L~~la~~~~vavv~tN 243 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSG--RGELSARQMHLARFLRSLQRLADEFGVAVVITN 243 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCC--cchHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 111 1111222234567899999999986432111 011122334456666666555444555665554
No 455
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.36 E-value=0.0075 Score=58.84 Aligned_cols=74 Identities=24% Similarity=0.328 Sum_probs=41.4
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhc-------------CCCeEEeehhhHH----HHH---------------hh------
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEA-------------EVPFISCSASEFV----ELY---------------VG------ 407 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~el-------------g~pfi~vs~se~~----~~~---------------vG------ 407 (641)
.-++|+||||+|||+++-.+|... +.++++++...-. ..+ ..
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~ 112 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGC 112 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccccc
Confidence 348899999999999999988754 2355666543211 110 00
Q ss_pred -----------cchHHHHHHHHHHHh-cCCceEEEcchhhhhhh
Q 006535 408 -----------MGASRVRDLFARAKK-EAPSIIFIDEIDAVAKS 439 (641)
Q Consensus 408 -----------~~~~~vr~lF~~A~~-~aP~ILfIDEIDaL~~~ 439 (641)
.....+..+.+.+.. ..|.+|+||.+..+...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 113 IRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp E---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 011223445555555 56889999999999754
No 456
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=0.014 Score=67.90 Aligned_cols=28 Identities=36% Similarity=0.455 Sum_probs=24.1
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHh
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGE 388 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~e 388 (641)
..+|...+-|+||+|+|||++|.-+-+-
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rf 517 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRF 517 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3567788999999999999999988773
No 457
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.35 E-value=0.026 Score=55.48 Aligned_cols=40 Identities=30% Similarity=0.417 Sum_probs=30.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHHHHhhcc
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMG 409 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~~~vG~~ 409 (641)
|.|+|.+|+|||++++.++...+++++ ++.++.......+
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i--~~D~~~~~~~~~~ 41 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI--DADKIAHQVVEKG 41 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE--eCCHHHHHHHhcC
Confidence 689999999999999999998767765 4455554444333
No 458
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.34 E-value=0.017 Score=59.11 Aligned_cols=21 Identities=38% Similarity=0.330 Sum_probs=18.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHh
Q 006535 368 VLLVGLPGTGKTLLAKAVAGE 388 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~e 388 (641)
-+|+||||+|||+|+..+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999998863
No 459
>PRK04182 cytidylate kinase; Provisional
Probab=96.34 E-value=0.0034 Score=60.27 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=26.8
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFIS 395 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg~pfi~ 395 (641)
-|+|.|+||+|||++++.+|..+|.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 37899999999999999999999998875
No 460
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.33 E-value=0.021 Score=56.49 Aligned_cols=28 Identities=36% Similarity=0.582 Sum_probs=24.3
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhc
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (641)
..+...+.|.||+|+|||+|.+.+++..
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455679999999999999999999976
No 461
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.32 E-value=0.014 Score=57.02 Aligned_cols=27 Identities=41% Similarity=0.465 Sum_probs=23.3
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhc
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (641)
.+...+.|.||+|+|||+|++.+++..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 445568999999999999999999864
No 462
>PRK01184 hypothetical protein; Provisional
Probab=96.31 E-value=0.0034 Score=61.19 Aligned_cols=29 Identities=34% Similarity=0.636 Sum_probs=25.4
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEe
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg~pfi~v 396 (641)
-|+|+||||+||||+++ ++.+.|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 48899999999999998 788999888665
No 463
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.31 E-value=0.029 Score=62.65 Aligned_cols=196 Identities=16% Similarity=0.201 Sum_probs=96.5
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHH-------HH--------hh-----cchHHHHHHHHH
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVE-------LY--------VG-----MGASRVRDLFAR 419 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~-------~~--------vG-----~~~~~vr~lF~~ 419 (641)
..|.-++|+||+|+||||++..+|..+ |....-+++..+.. .+ .. ......++.++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 457789999999999999999998765 55666565543211 00 00 001223345555
Q ss_pred HHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCC--hhhhCCCCcceE
Q 006535 420 AKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD--PALRRPGRFDRV 497 (641)
Q Consensus 420 A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD--~ALlRpgRFd~~ 497 (641)
++.....+||||=.-.+. .+ +..+.++....+...+...++|+-++...+..+ .++.....++ .
T Consensus 178 ~~~~~~DvViIDTaGr~~----------~d---~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~-g 243 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRHK----------QE---DSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVG-S 243 (429)
T ss_pred HHhCCCCEEEEECCCCCc----------ch---HHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCc-E
Confidence 655556688888653221 11 223333333333223333345554443322222 1222211223 3
Q ss_pred EEecCCCHHHHHH-HHHHHHhcCCCC---------C--CCCCCHHHHHHhCCCCCHHHHHHHHHHHHHH---------HH
Q 006535 498 VMVETPDKIGREA-ILKVHVSKKELP---------L--AKDIDLGDIASMTTGFTGADLANLVNEAALL---------AG 556 (641)
Q Consensus 498 I~v~~Pd~~eR~e-ILk~~l~~~~l~---------l--~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~---------A~ 556 (641)
+-+...|...|-- +|..... .+.| + -...+.+.++.+.-|. +|+..|++.|... +.
T Consensus 244 ~IlTKlD~~argG~aLs~~~~-t~~PI~fig~Ge~v~Dle~f~p~~~~~rilgm--gDi~~L~ek~~~~~~~~~~~~~~~ 320 (429)
T TIGR01425 244 VIITKLDGHAKGGGALSAVAA-TKSPIIFIGTGEHIDDFEIFKTQPFISKLLGM--GDIEGLIDKVQDLKLDDNEKALIE 320 (429)
T ss_pred EEEECccCCCCccHHhhhHHH-HCCCeEEEcCCCChhhcCcCChHHHHHHHhcC--CCcHHHHHHHHHhhhHHHHHHHHH
Confidence 3455666655542 2332211 1111 1 1123456666666553 5777777755332 11
Q ss_pred hcCCccccHHHHHHHHHHH
Q 006535 557 RLNKVVVEKIDFIHAVERS 575 (641)
Q Consensus 557 r~~~~~It~~d~~eAl~rv 575 (641)
+-.+...+.+||.+-++..
T Consensus 321 k~~~~~f~l~D~~~q~~~i 339 (429)
T TIGR01425 321 KLKEGTFTLRDMYEQFQNL 339 (429)
T ss_pred HHHhCCCCHHHHHHHHHHH
Confidence 1123456788888877654
No 464
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.31 E-value=0.0079 Score=67.64 Aligned_cols=95 Identities=20% Similarity=0.292 Sum_probs=59.8
Q ss_pred CccccccccCChHHHHHHHHHHHHhcChhHHhhhCCCCCCe-eEEEcCCCCcHHHHHHHHHHhcCCCeE-EeehhhHHHH
Q 006535 327 DTITFADVAGVDEAKEELEEIVEFLRSPDKYIRLGARPPRG-VLLVGLPGTGKTLLAKAVAGEAEVPFI-SCSASEFVEL 404 (641)
Q Consensus 327 ~~vtf~DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~~~pkg-VLL~GPPGTGKT~LAkAlA~elg~pfi-~vs~se~~~~ 404 (641)
...+|+++.......+.+.+++. .|.| +|+.||.|+|||+...++.++++-+.. .++..+-++.
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~--------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLN--------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHh--------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 35677888777777766666653 3445 567799999999999999998865543 2222222221
Q ss_pred Hh-hc--------chHHHHHHHHHHHhcCCceEEEcchhh
Q 006535 405 YV-GM--------GASRVRDLFARAKKEAPSIIFIDEIDA 435 (641)
Q Consensus 405 ~v-G~--------~~~~vr~lF~~A~~~aP~ILfIDEIDa 435 (641)
.. |- ..-.....++....+.|+||.+.||-.
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 10 00 001123344555668899999999954
No 465
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.30 E-value=0.01 Score=65.55 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=22.6
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcC
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEAE 390 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elg 390 (641)
..-++|+||||+|||+|++.+++...
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc
Confidence 34599999999999999999999753
No 466
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.29 E-value=0.013 Score=56.29 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.1
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHH
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAG 387 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~ 387 (641)
++..++.||.|+|||++.++++-
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999754
No 467
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.29 E-value=0.0038 Score=59.56 Aligned_cols=29 Identities=38% Similarity=0.629 Sum_probs=26.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCeEEe
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEAEVPFISC 396 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elg~pfi~v 396 (641)
|.|+|++|+|||++|+.+|..++.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999987653
No 468
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.26 E-value=0.0073 Score=62.88 Aligned_cols=116 Identities=19% Similarity=0.207 Sum_probs=65.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcC---------CCeEEeehhh---------HHHHHhhc--------------chHHHHH
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEAE---------VPFISCSASE---------FVELYVGM--------------GASRVRD 415 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~elg---------~pfi~vs~se---------~~~~~vG~--------------~~~~vr~ 415 (641)
.=|+||||+|||.|+-.+|-... ...++++... +.+.+... ....+..
T Consensus 41 tEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~ 120 (256)
T PF08423_consen 41 TEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLE 120 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHH
T ss_pred EEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHH
Confidence 33999999999999998876542 3356665432 11111000 0011112
Q ss_pred HH----HHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCC
Q 006535 416 LF----ARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLD 485 (641)
Q Consensus 416 lF----~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD 485 (641)
++ .........+|+||-|-++.+..-.+ .+...++.+.+..++..|..+....++.||.+.......+
T Consensus 121 ~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~--~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~ 192 (256)
T PF08423_consen 121 LLEQLPKLLSESKIKLIVIDSIAALFRSEFSG--RGDLAERQRMLARLARILKRLARKYNIAVVVTNQVTTKID 192 (256)
T ss_dssp HHHHHHHHHHHSCEEEEEEETSSHHHHHHSGS--TTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT
T ss_pred HHHHHHhhccccceEEEEecchHHHHHHHHcc--chhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceeeecCC
Confidence 22 22223456699999999998653211 1223456677788777777666666677765554333343
No 469
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.25 E-value=0.095 Score=58.99 Aligned_cols=31 Identities=35% Similarity=0.486 Sum_probs=28.1
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhcCCCe
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEAEVPF 393 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~elg~pf 393 (641)
..|.-++++|+||+|||++|..+|..++...
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ 283 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITR 283 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 3588899999999999999999999999863
No 470
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.22 E-value=0.04 Score=62.75 Aligned_cols=78 Identities=27% Similarity=0.278 Sum_probs=49.9
Q ss_pred CCCCCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHHHHHh------hc----------------------c
Q 006535 361 GARPPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFVELYV------GM----------------------G 409 (641)
Q Consensus 361 g~~~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~~~~v------G~----------------------~ 409 (641)
|......++++||||+|||+|+..++.+. |-+.++++..+-.+.+. |. .
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 45666779999999999999999988653 66666665432211100 00 0
Q ss_pred hHHHHHHHHHHHhcCCceEEEcchhhhhh
Q 006535 410 ASRVRDLFARAKKEAPSIIFIDEIDAVAK 438 (641)
Q Consensus 410 ~~~vr~lF~~A~~~aP~ILfIDEIDaL~~ 438 (641)
...+..+.+......|.+|+||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 12223333444556788999999998864
No 471
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.22 E-value=0.017 Score=56.31 Aligned_cols=28 Identities=32% Similarity=0.380 Sum_probs=24.0
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhc
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (641)
..+..-+.|.||+|+|||+|++.+++..
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455668999999999999999999965
No 472
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.21 E-value=0.022 Score=59.25 Aligned_cols=56 Identities=25% Similarity=0.328 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC
Q 006535 411 SRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (641)
Q Consensus 411 ~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~p 481 (641)
+.-|-++.+|....|.++++||=- .+-+...+..+.+||.++. .. +..|+..|...
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~-----------~gvD~~~~~~i~~lL~~l~---~e-g~tIl~vtHDL 199 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPF-----------TGVDVAGQKEIYDLLKELR---QE-GKTVLMVTHDL 199 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCc-----------ccCCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCc
Confidence 334567788888899999999942 1233344566667777665 22 55666666654
No 473
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.19 E-value=0.043 Score=65.68 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=21.1
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHh
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGE 388 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~e 388 (641)
..++|+||.|+|||++.+.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 56999999999999999999876
No 474
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.19 E-value=0.032 Score=55.09 Aligned_cols=26 Identities=38% Similarity=0.584 Sum_probs=22.5
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHh
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGE 388 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~e 388 (641)
.+...+.|.||+|+|||+|++.+++.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34556899999999999999999974
No 475
>PRK08233 hypothetical protein; Provisional
Probab=96.18 E-value=0.0052 Score=59.21 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=25.5
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcC-CCeEEee
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEAE-VPFISCS 397 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg-~pfi~vs 397 (641)
.-|.+.|+||+||||+|+.++..++ .+.+..+
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 3477889999999999999999885 4444444
No 476
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.18 E-value=0.02 Score=55.37 Aligned_cols=39 Identities=28% Similarity=0.362 Sum_probs=30.1
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHH
Q 006535 364 PPRGVLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV 402 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~ 402 (641)
.+.-+.|.|+||+|||++|++++..+ +..+..++...+.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 34568899999999999999999986 4456666665543
No 477
>PRK12338 hypothetical protein; Provisional
Probab=96.18 E-value=0.11 Score=56.09 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=27.4
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 006535 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi 394 (641)
.|.-+++.|+||+|||++|+++|..++...+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 4667999999999999999999999987653
No 478
>PF13245 AAA_19: Part of AAA domain
Probab=96.18 E-value=0.0069 Score=51.53 Aligned_cols=22 Identities=45% Similarity=0.611 Sum_probs=16.3
Q ss_pred eEEEcCCCCcHH-HHHHHHHHhc
Q 006535 368 VLLVGLPGTGKT-LLAKAVAGEA 389 (641)
Q Consensus 368 VLL~GPPGTGKT-~LAkAlA~el 389 (641)
+++.|||||||| ++++.++...
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 556999999999 5555555544
No 479
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.17 E-value=0.0076 Score=56.87 Aligned_cols=29 Identities=31% Similarity=0.290 Sum_probs=25.4
Q ss_pred CCCeeEEEcCCCCcHHHHHHHHHHhcCCC
Q 006535 364 PPRGVLLVGLPGTGKTLLAKAVAGEAEVP 392 (641)
Q Consensus 364 ~pkgVLL~GPPGTGKT~LAkAlA~elg~p 392 (641)
+..-++|.|+.|+|||+|+|.+++.++.+
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 34568999999999999999999998864
No 480
>PLN02199 shikimate kinase
Probab=96.16 E-value=0.018 Score=61.34 Aligned_cols=33 Identities=33% Similarity=0.607 Sum_probs=29.8
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEee
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCS 397 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs 397 (641)
.++|+|.|.+|+|||++++.+|..+|++|+..+
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 357999999999999999999999999998654
No 481
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.10 E-value=0.056 Score=53.35 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=23.4
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhc
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (641)
.++.-+.|.||+|+|||+|++++++..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 455568999999999999999999964
No 482
>PRK10263 DNA translocase FtsK; Provisional
Probab=96.10 E-value=0.033 Score=68.82 Aligned_cols=74 Identities=16% Similarity=0.290 Sum_probs=50.8
Q ss_pred eEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCC--CCChhhhCCCCcceEEEecCCC
Q 006535 427 IIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSD--VLDPALRRPGRFDRVVMVETPD 504 (641)
Q Consensus 427 ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd--~LD~ALlRpgRFd~~I~v~~Pd 504 (641)
||+|||+..|.... ..+.+..+..|.. .....+|.+|.+|.+|+ .|...++. -|..+|-+..-+
T Consensus 1143 VVIIDE~AdLm~~~--------~kevE~lI~rLAq----kGRAaGIHLILATQRPsvDVItg~IKA--N~ptRIAfrVsS 1208 (1355)
T PRK10263 1143 VVLVDEFADLMMTV--------GKKVEELIARLAQ----KARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSS 1208 (1355)
T ss_pred EEEEcChHHHHhhh--------hHHHHHHHHHHHH----HhhhcCeEEEEEecCcccccchHHHHh--hccceEEEEcCC
Confidence 89999998876431 1233344444333 33456899999999985 66666665 677788888888
Q ss_pred HHHHHHHHHH
Q 006535 505 KIGREAILKV 514 (641)
Q Consensus 505 ~~eR~eILk~ 514 (641)
..+-+.||..
T Consensus 1209 ~~DSrtILd~ 1218 (1355)
T PRK10263 1209 KIDSRTILDQ 1218 (1355)
T ss_pred HHHHHHhcCC
Confidence 8888878754
No 483
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.10 E-value=0.017 Score=60.74 Aligned_cols=70 Identities=21% Similarity=0.290 Sum_probs=38.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehhhHH-H--HH-hhcchHHHHHHHHHHH---hcCCceEEEcchhhhh
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSASEFV-E--LY-VGMGASRVRDLFARAK---KEAPSIIFIDEIDAVA 437 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~se~~-~--~~-vG~~~~~vr~lF~~A~---~~aP~ILfIDEIDaL~ 437 (641)
|+|+|-||+|||++|+.|+..+ +...+.++...+. . .| ....++.+|..+..+- -....||++|+...+-
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYiK 83 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYIK 83 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---SH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchHH
Confidence 7899999999999999999864 5677777755443 1 11 1223455554443331 1234699999987663
No 484
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.09 E-value=0.0061 Score=50.53 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~el 389 (641)
+.+.|+||+|||+++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999985
No 485
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.06 E-value=0.01 Score=64.76 Aligned_cols=69 Identities=23% Similarity=0.285 Sum_probs=42.7
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcC------CCeEEeeh-hhHHH------------HHhhcchHHHHHHHHHHHhcCCc
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEAE------VPFISCSA-SEFVE------------LYVGMGASRVRDLFARAKKEAPS 426 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg------~pfi~vs~-se~~~------------~~vG~~~~~vr~lF~~A~~~aP~ 426 (641)
..++++||+|+|||+++++++++.. ..++.+.. -++.- .-++.........+..+....|.
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd 214 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKPH 214 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCCC
Confidence 4589999999999999999998752 22332211 11100 00111112345556667778999
Q ss_pred eEEEcchh
Q 006535 427 IIFIDEID 434 (641)
Q Consensus 427 ILfIDEID 434 (641)
++++.|+.
T Consensus 215 ~i~vGEiR 222 (358)
T TIGR02524 215 AILVGEAR 222 (358)
T ss_pred EEeeeeeC
Confidence 99999974
No 486
>PRK14526 adenylate kinase; Provisional
Probab=96.05 E-value=0.0057 Score=61.96 Aligned_cols=35 Identities=29% Similarity=0.534 Sum_probs=28.3
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhcCCCeEEeehhhHHH
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVE 403 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~se~~~ 403 (641)
.++|.||||+|||++++.+|+..+.+.++ ..+++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is--~G~llr 36 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS--TGDLFR 36 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee--cChHHH
Confidence 38899999999999999999998876654 444443
No 487
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.04 E-value=0.044 Score=60.18 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=21.0
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhc
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el 389 (641)
.+||+||||||||+|++.+|+.+
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47999999999999999998865
No 488
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.03 E-value=0.031 Score=56.28 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.3
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHH
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAG 387 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~ 387 (641)
.+-++|.||.|+|||++.+.++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999975
No 489
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.03 E-value=0.021 Score=67.89 Aligned_cols=97 Identities=23% Similarity=0.353 Sum_probs=56.3
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhc---C--CCeEEeehh----hHHHHHhhcchHHHHHHHHHHH----------hcCCce
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEA---E--VPFISCSAS----EFVELYVGMGASRVRDLFARAK----------KEAPSI 427 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el---g--~pfi~vs~s----e~~~~~vG~~~~~vr~lF~~A~----------~~aP~I 427 (641)
-++|.|+||||||++++++...+ + .+++.+... .-+....|..+..+..++.... .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 58999999999999999986643 4 445444322 1122222333344444443211 123469
Q ss_pred EEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCC
Q 006535 428 IFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS 481 (641)
Q Consensus 428 LfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~p 481 (641)
|+|||+..+. ...+..|+..+ .....+++++-.+..
T Consensus 420 lIvDEaSMvd---------------~~~~~~Ll~~~---~~~~rlilvGD~~QL 455 (720)
T TIGR01448 420 LIVDESSMMD---------------TWLALSLLAAL---PDHARLLLVGDTDQL 455 (720)
T ss_pred EEEeccccCC---------------HHHHHHHHHhC---CCCCEEEEECccccc
Confidence 9999987663 12345555543 345567777766553
No 490
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.02 E-value=0.051 Score=55.25 Aligned_cols=125 Identities=25% Similarity=0.298 Sum_probs=73.9
Q ss_pred ChhHHhhhCCCCCCe--eEEEcCCCCcHHHHHHHHHHhc---CCCeEEeehh----hHHHH-------------------
Q 006535 353 SPDKYIRLGARPPRG--VLLVGLPGTGKTLLAKAVAGEA---EVPFISCSAS----EFVEL------------------- 404 (641)
Q Consensus 353 ~p~~~~~lg~~~pkg--VLL~GPPGTGKT~LAkAlA~el---g~pfi~vs~s----e~~~~------------------- 404 (641)
+-+.-.++|.-.|.| +++.|+.|||||.|.+.++.-+ +....+++.. +|...
T Consensus 14 ndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~ 93 (235)
T COG2874 14 NDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLF 93 (235)
T ss_pred cHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEE
Confidence 334445666655554 7788999999999999998632 3333333221 11110
Q ss_pred ----------HhhcchHHHHHHHHHHHhcCCceEEEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEE
Q 006535 405 ----------YVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIV 474 (641)
Q Consensus 405 ----------~vG~~~~~vr~lF~~A~~~aP~ILfIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViV 474 (641)
-.....+.+..+.+..+.....||+||-+..+.... .++.+.+++..+..+....++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-----------~~~~vl~fm~~~r~l~d~gKvIi 162 (235)
T COG2874 94 FPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-----------SEDAVLNFMTFLRKLSDLGKVII 162 (235)
T ss_pred EEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-----------cHHHHHHHHHHHHHHHhCCCEEE
Confidence 001122334444454555566799999998886432 13344566666666666666666
Q ss_pred EEecCCCCCCChhhhC
Q 006535 475 LGATNRSDVLDPALRR 490 (641)
Q Consensus 475 IaATN~pd~LD~ALlR 490 (641)
+ |-+|+.++++++-
T Consensus 163 l--Tvhp~~l~e~~~~ 176 (235)
T COG2874 163 L--TVHPSALDEDVLT 176 (235)
T ss_pred E--EeChhhcCHHHHH
Confidence 4 4456788888765
No 491
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.01 E-value=0.22 Score=51.85 Aligned_cols=191 Identities=16% Similarity=0.162 Sum_probs=99.6
Q ss_pred CCCCCeeEEEcCCCCcHHHHHHHHHHhcCCCeEEeeh--hhHHHHHhhc--chHHHHHHHHH---HHh---cCC-ceEEE
Q 006535 362 ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSA--SEFVELYVGM--GASRVRDLFAR---AKK---EAP-SIIFI 430 (641)
Q Consensus 362 ~~~pkgVLL~GPPGTGKT~LAkAlA~elg~pfi~vs~--se~~~~~vG~--~~~~vr~lF~~---A~~---~aP-~ILfI 430 (641)
...|.-|||=|+||+|||++|.-+|.++|++-+--.. .+++-...+. ....-...|.. .+. ..| +.=|.
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~ 165 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFE 165 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHH
Confidence 4567889999999999999999999999987653211 1222222210 00000111111 111 111 01122
Q ss_pred cchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHHHH
Q 006535 431 DEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGREA 510 (641)
Q Consensus 431 DEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR~e 510 (641)
|....+. -..+.++..-+++ ..++++=+.-=-|..+++..+-. -...+.+-.+|.+.-+.
T Consensus 166 dqa~~V~------------~GI~~VI~RAi~e------G~~lIIEGvHlVPg~i~~~~~~~--n~~~~~l~i~dee~Hr~ 225 (299)
T COG2074 166 DQASAVM------------VGIEAVIERAIEE------GEDLIIEGVHLVPGLIKEEALGN--NVFMFMLYIADEELHRE 225 (299)
T ss_pred HHhHHHH------------HHHHHHHHHHHhc------CcceEEEeeeeccccccHhhhcc--ceEEEEEEeCCHHHHHH
Confidence 2222221 1122333333332 22333333334477777776632 23355666677666555
Q ss_pred HHHHHHhcCCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHhcchhh
Q 006535 511 ILKVHVSKKELPLAKDIDLGDIASMTTGFTGADLANLVNEAALLAGRLNKVVVEKIDFIHAVERSIAGIEK 581 (641)
Q Consensus 511 ILk~~l~~~~l~l~~dvdl~~LA~~T~GfSgaDL~~Lv~eAal~A~r~~~~~It~~d~~eAl~rvi~g~~~ 581 (641)
-|-........ .. .....++.. .++..+-+-....|...+-..|+.+|+++++++.+..+.+
T Consensus 226 RF~~R~~~t~~--~r--p~~Ryl~yf-----~EiR~I~Dyl~~~Are~gVPvI~n~di~etv~~il~~i~~ 287 (299)
T COG2074 226 RFYDRIRYTHA--SR--PGGRYLEYF-----KEIRTIHDYLVERAREHGVPVIENDDIDETVDRILEDIRK 287 (299)
T ss_pred HHHHHHHHHhc--cC--chhHHHHHH-----HHHHHHHHHHHHHHHhcCCCeeccccHHHHHHHHHHHHHH
Confidence 44443322100 00 122222222 4566677777778888898999999999999998765543
No 492
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.99 E-value=0.018 Score=56.02 Aligned_cols=27 Identities=33% Similarity=0.508 Sum_probs=23.0
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhc
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el 389 (641)
.+..-+.|.||+|+|||+|++++++..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568899999999999999999864
No 493
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.99 E-value=0.0047 Score=60.96 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=17.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc
Q 006535 368 VLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 368 VLL~GPPGTGKT~LAkAlA~el 389 (641)
.++.||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998777666554
No 494
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.97 E-value=0.007 Score=59.47 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=25.0
Q ss_pred CeeEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 006535 366 RGVLLVGLPGTGKTLLAKAVAGEAEVPFI 394 (641)
Q Consensus 366 kgVLL~GPPGTGKT~LAkAlA~elg~pfi 394 (641)
..++|.||+|+|||+|++.+++..+.+|+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 35889999999999999999998776553
No 495
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.97 E-value=0.0049 Score=62.27 Aligned_cols=23 Identities=52% Similarity=0.531 Sum_probs=18.6
Q ss_pred eeEEEcCCCCcHHHHHHHHHHhc
Q 006535 367 GVLLVGLPGTGKTLLAKAVAGEA 389 (641)
Q Consensus 367 gVLL~GPPGTGKT~LAkAlA~el 389 (641)
-+.+.||.|||||+||-+.|-++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 48999999999999999998754
No 496
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.047 Score=60.18 Aligned_cols=78 Identities=26% Similarity=0.423 Sum_probs=59.4
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHHhc--CCCeEEeehhhHHHHHh------h--------cchHHHHHHHHHHHhcCCc
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAGEA--EVPFISCSASEFVELYV------G--------MGASRVRDLFARAKKEAPS 426 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~el--g~pfi~vs~se~~~~~v------G--------~~~~~vr~lF~~A~~~aP~ 426 (641)
-+..-+|+-|.||.|||+|.-.+|..+ ..+.+++++.+-....- + ..+..+.+++.......|.
T Consensus 91 V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~ 170 (456)
T COG1066 91 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPD 170 (456)
T ss_pred ccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCC
Confidence 444558888999999999988887754 23899999876554321 1 1455678888889999999
Q ss_pred eEEEcchhhhhhhc
Q 006535 427 IIFIDEIDAVAKSR 440 (641)
Q Consensus 427 ILfIDEIDaL~~~r 440 (641)
+++||-|..+....
T Consensus 171 lvVIDSIQT~~s~~ 184 (456)
T COG1066 171 LVVIDSIQTLYSEE 184 (456)
T ss_pred EEEEeccceeeccc
Confidence 99999999987554
No 497
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=95.96 E-value=0.0081 Score=65.14 Aligned_cols=70 Identities=27% Similarity=0.368 Sum_probs=47.1
Q ss_pred CCeeEEEcCCCCcHHHHHHHHHHhcCC--CeEEeeh-hhHH-------HHH------hhcchHHHHHHHHHHHhcCCceE
Q 006535 365 PRGVLLVGLPGTGKTLLAKAVAGEAEV--PFISCSA-SEFV-------ELY------VGMGASRVRDLFARAKKEAPSII 428 (641)
Q Consensus 365 pkgVLL~GPPGTGKT~LAkAlA~elg~--pfi~vs~-se~~-------~~~------vG~~~~~vr~lF~~A~~~aP~IL 428 (641)
..++++.|++|+|||+++++++++... ..+.+.. .++. ... .|.+.-...+++..+....|+.|
T Consensus 178 ~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~I 257 (340)
T TIGR03819 178 RLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRI 257 (340)
T ss_pred CCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCCCeE
Confidence 457999999999999999999987531 1222211 1111 000 12233456788889999999999
Q ss_pred EEcchh
Q 006535 429 FIDEID 434 (641)
Q Consensus 429 fIDEID 434 (641)
++.|+-
T Consensus 258 ivGEiR 263 (340)
T TIGR03819 258 VVGEVR 263 (340)
T ss_pred EEeCcC
Confidence 999983
No 498
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.94 E-value=0.017 Score=62.61 Aligned_cols=81 Identities=26% Similarity=0.414 Sum_probs=49.5
Q ss_pred cc-cccCChHHHHHHHHHHHHhcChhHHhhhCC-CCCCeeEEEcCCCCcHHHHHHHHHHhcC-CCeEEeehhhHHHHHhh
Q 006535 331 FA-DVAGVDEAKEELEEIVEFLRSPDKYIRLGA-RPPRGVLLVGLPGTGKTLLAKAVAGEAE-VPFISCSASEFVELYVG 407 (641)
Q Consensus 331 f~-DV~G~ee~K~~L~eiv~~L~~p~~~~~lg~-~~pkgVLL~GPPGTGKT~LAkAlA~elg-~pfi~vs~se~~~~~vG 407 (641)
|+ ++.|++++.+ ++|++++...+ |. ...+-++|.||+|+|||+|++.+.+-+. .+++.+..+-+.+.-..
T Consensus 59 f~~~~~G~~~~i~---~lV~~fk~AA~----g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~ 131 (358)
T PF08298_consen 59 FEDEFYGMEETIE---RLVNYFKSAAQ----GLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLH 131 (358)
T ss_pred ccccccCcHHHHH---HHHHHHHHHHh----ccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhh
Confidence 44 8999998765 56666654322 32 2345577999999999999999988652 35555544333332222
Q ss_pred cchHHHHHHHH
Q 006535 408 MGASRVRDLFA 418 (641)
Q Consensus 408 ~~~~~vr~lF~ 418 (641)
.-...+|+.|.
T Consensus 132 L~P~~~r~~~~ 142 (358)
T PF08298_consen 132 LFPKELRREFE 142 (358)
T ss_pred hCCHhHHHHHH
Confidence 22344454443
No 499
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=95.92 E-value=0.18 Score=52.43 Aligned_cols=148 Identities=12% Similarity=0.065 Sum_probs=96.5
Q ss_pred CCCeeEEEcCCC-CcHHHHHHHHHHhcC---------CCeEEeehhhHHHH-HhhcchHHHHHHHHHHHh----cCCceE
Q 006535 364 PPRGVLLVGLPG-TGKTLLAKAVAGEAE---------VPFISCSASEFVEL-YVGMGASRVRDLFARAKK----EAPSII 428 (641)
Q Consensus 364 ~pkgVLL~GPPG-TGKT~LAkAlA~elg---------~pfi~vs~se~~~~-~vG~~~~~vr~lF~~A~~----~aP~IL 428 (641)
.....|+.|..+ +||..++.-++..+. -.++.+....-... -..-+...+|++-+.+.. ...-|+
T Consensus 14 LshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 14 LYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred chheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEE
Confidence 445699999998 999999888777542 22333322110000 001245667776665542 234599
Q ss_pred EEcchhhhhhhcCCcccccchhHHHHHHHHHHhhhcCCCCCCcEEEEEecCCCCCCChhhhCCCCcceEEEecCCCHHHH
Q 006535 429 FIDEIDAVAKSRDGRFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRVVMVETPDKIGR 508 (641)
Q Consensus 429 fIDEIDaL~~~r~~~~~~~~~~e~~~~LnqLL~emd~~~~~~~ViVIaATN~pd~LD~ALlRpgRFd~~I~v~~Pd~~eR 508 (641)
+||++|.+.. +..|.||..++. +..++++|..|+.++.+.|.+++ |. ..+.++.|+...-
T Consensus 94 II~~ae~mt~---------------~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~ 153 (263)
T PRK06581 94 IIYSAELMNL---------------NAANSCLKILED--APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAY 153 (263)
T ss_pred EEechHHhCH---------------HHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHH
Confidence 9999999853 344889999984 55667777778788899999988 53 3788999988777
Q ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHh
Q 006535 509 EAILKVHVSKKELPLAKDIDLGDIASM 535 (641)
Q Consensus 509 ~eILk~~l~~~~l~l~~dvdl~~LA~~ 535 (641)
.++....+. +..++..++-|.+.
T Consensus 154 ~e~~~~~~~----p~~~~~~l~~i~~~ 176 (263)
T PRK06581 154 NELYSQFIQ----PIADNKTLDFINRF 176 (263)
T ss_pred HHHHHHhcc----cccccHHHHHHHHH
Confidence 777766653 33344445555544
No 500
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.91 E-value=0.093 Score=53.87 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=21.4
Q ss_pred CCCCeeEEEcCCCCcHHHHHHHHHH
Q 006535 363 RPPRGVLLVGLPGTGKTLLAKAVAG 387 (641)
Q Consensus 363 ~~pkgVLL~GPPGTGKT~LAkAlA~ 387 (641)
....-+-|.||+|||||||...+++
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3444588999999999999999987
Done!