Query 006538
Match_columns 641
No_of_seqs 336 out of 4034
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 00:44:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006538.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006538hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 3.3E-31 7.1E-36 247.2 12.9 219 310-565 239-461 (483)
2 KOG4341 F-box protein containi 99.9 4.6E-27 1E-31 219.6 11.1 317 221-587 138-459 (483)
3 PLN00113 leucine-rich repeat r 99.9 2.1E-24 4.6E-29 247.0 15.9 106 49-164 92-197 (968)
4 PLN00113 leucine-rich repeat r 99.9 4.3E-24 9.3E-29 244.5 15.7 469 37-569 56-560 (968)
5 KOG4194 Membrane glycoprotein 99.9 1.5E-24 3.2E-29 210.7 0.5 371 73-505 49-426 (873)
6 KOG2120 SCF ubiquitin ligase, 99.9 1.3E-22 2.9E-27 181.3 12.3 185 223-425 187-373 (419)
7 KOG4194 Membrane glycoprotein 99.8 1.3E-21 2.9E-26 190.3 3.3 372 125-579 79-468 (873)
8 cd00116 LRR_RI Leucine-rich re 99.8 1.4E-16 3.1E-21 158.9 25.1 167 390-566 137-317 (319)
9 KOG2120 SCF ubiquitin ligase, 99.7 2.7E-17 5.8E-22 147.6 10.6 254 314-587 137-394 (419)
10 cd00116 LRR_RI Leucine-rich re 99.7 5.2E-15 1.1E-19 147.6 23.4 269 297-576 7-299 (319)
11 KOG1909 Ran GTPase-activating 99.7 4.5E-16 9.7E-21 143.4 12.1 259 311-580 28-325 (382)
12 KOG0618 Serine/threonine phosp 99.7 1.5E-17 3.3E-22 171.1 1.6 128 414-567 358-487 (1081)
13 KOG0444 Cytoskeletal regulator 99.6 4.8E-18 1E-22 167.1 -5.0 370 48-483 5-376 (1255)
14 PLN03210 Resistant to P. syrin 99.6 9.3E-15 2E-19 167.8 15.9 147 182-374 588-734 (1153)
15 PLN03210 Resistant to P. syrin 99.6 1.8E-14 3.8E-19 165.5 15.2 346 120-544 554-908 (1153)
16 KOG1909 Ran GTPase-activating 99.6 7.9E-14 1.7E-18 128.7 15.1 234 331-575 22-290 (382)
17 KOG0444 Cytoskeletal regulator 99.6 6.7E-17 1.4E-21 159.1 -6.3 58 98-164 7-64 (1255)
18 KOG0618 Serine/threonine phosp 99.5 5.8E-16 1.3E-20 159.7 -3.2 129 389-541 358-488 (1081)
19 KOG1947 Leucine rich repeat pr 99.5 2.9E-13 6.3E-18 143.6 13.9 139 220-373 187-329 (482)
20 KOG1947 Leucine rich repeat pr 99.4 6.4E-13 1.4E-17 141.0 12.4 242 312-567 187-438 (482)
21 COG5238 RNA1 Ran GTPase-activa 99.2 1.2E-10 2.6E-15 104.0 11.4 167 388-566 90-282 (388)
22 COG5238 RNA1 Ran GTPase-activa 99.2 1.7E-10 3.7E-15 103.0 11.5 246 312-567 29-314 (388)
23 KOG0472 Leucine-rich repeat pr 99.2 4.4E-13 9.5E-18 125.8 -5.6 60 217-287 224-283 (565)
24 KOG3207 Beta-tubulin folding c 99.1 1.9E-11 4.2E-16 116.4 2.7 211 311-566 119-336 (505)
25 KOG3207 Beta-tubulin folding c 99.0 2.9E-11 6.2E-16 115.2 -0.3 133 312-450 196-335 (505)
26 PRK15387 E3 ubiquitin-protein 98.9 2.4E-09 5.1E-14 114.7 9.6 31 221-256 222-252 (788)
27 PRK15387 E3 ubiquitin-protein 98.9 1.3E-09 2.8E-14 116.7 5.9 225 220-516 241-465 (788)
28 KOG2982 Uncharacterized conser 98.9 1.5E-09 3.3E-14 98.4 4.8 211 358-588 64-287 (418)
29 KOG3665 ZYG-1-like serine/thre 98.8 1.4E-08 3E-13 108.4 10.2 215 220-450 59-284 (699)
30 PF12937 F-box-like: F-box-lik 98.8 1.1E-09 2.3E-14 73.2 0.7 36 11-46 1-36 (47)
31 KOG0472 Leucine-rich repeat pr 98.8 8.8E-11 1.9E-15 110.6 -7.1 37 219-257 250-286 (565)
32 KOG3665 ZYG-1-like serine/thre 98.7 4.8E-08 1E-12 104.4 10.5 35 313-350 60-94 (699)
33 PRK15370 E3 ubiquitin-protein 98.7 3.8E-08 8.3E-13 106.2 9.8 232 221-513 199-432 (754)
34 KOG4237 Extracellular matrix p 98.6 2.5E-09 5.4E-14 100.9 -2.2 84 469-567 274-357 (498)
35 PRK15370 E3 ubiquitin-protein 98.6 1.6E-07 3.4E-12 101.5 9.5 170 366-575 263-435 (754)
36 KOG1259 Nischarin, modulator o 98.5 2.7E-08 6E-13 90.4 0.5 127 364-506 283-410 (490)
37 KOG1259 Nischarin, modulator o 98.4 1.6E-07 3.4E-12 85.6 2.3 128 413-567 282-410 (490)
38 PF14580 LRR_9: Leucine-rich r 98.4 3.3E-08 7.1E-13 86.3 -2.1 12 494-505 87-98 (175)
39 KOG4237 Extracellular matrix p 98.3 6.1E-08 1.3E-12 91.7 -1.0 236 311-567 89-333 (498)
40 KOG3864 Uncharacterized conser 98.3 6.6E-07 1.4E-11 77.2 5.3 107 469-587 101-211 (221)
41 PF14580 LRR_9: Leucine-rich r 98.3 2.7E-07 5.9E-12 80.5 2.4 103 388-506 17-124 (175)
42 PF00646 F-box: F-box domain; 98.2 4.2E-07 9E-12 61.1 1.5 37 10-46 2-38 (48)
43 KOG2982 Uncharacterized conser 98.2 9.5E-07 2.1E-11 80.6 4.1 191 305-506 63-260 (418)
44 smart00256 FBOX A Receptor for 98.1 2.3E-06 4.9E-11 55.3 2.5 33 14-46 1-33 (41)
45 KOG3864 Uncharacterized conser 98.0 6.4E-06 1.4E-10 71.3 4.0 87 416-507 102-188 (221)
46 PF13855 LRR_8: Leucine rich r 97.8 4.7E-06 1E-10 59.4 0.6 61 365-427 1-61 (61)
47 KOG4658 Apoptotic ATPase [Sign 97.8 1.5E-05 3.2E-10 88.0 4.1 17 412-428 714-730 (889)
48 KOG0617 Ras suppressor protein 97.7 1.9E-07 4E-12 78.0 -10.1 57 366-426 34-90 (264)
49 KOG1859 Leucine-rich repeat pr 97.6 3.3E-06 7E-11 86.5 -3.7 106 388-506 185-290 (1096)
50 KOG4658 Apoptotic ATPase [Sign 97.6 3.9E-05 8.4E-10 84.8 4.0 232 311-567 543-781 (889)
51 PF13855 LRR_8: Leucine rich r 97.6 9.9E-06 2.1E-10 57.7 -0.7 60 390-452 1-60 (61)
52 KOG0617 Ras suppressor protein 97.6 7.4E-07 1.6E-11 74.4 -7.7 126 365-505 56-183 (264)
53 KOG4308 LRR-containing protein 97.5 1.7E-05 3.6E-10 81.5 -0.8 220 315-546 89-335 (478)
54 KOG4308 LRR-containing protein 97.4 6.1E-05 1.3E-09 77.4 2.1 315 223-567 89-443 (478)
55 KOG1859 Leucine-rich repeat pr 97.4 2.9E-05 6.3E-10 79.8 -1.3 200 331-567 76-290 (1096)
56 PRK15386 type III secretion pr 97.2 0.00068 1.5E-08 67.2 6.0 70 312-399 51-121 (426)
57 KOG2123 Uncharacterized conser 97.0 0.00021 4.6E-09 65.1 0.4 54 390-450 19-72 (388)
58 PLN03150 hypothetical protein; 96.8 0.0018 3.8E-08 70.2 6.2 105 392-507 420-527 (623)
59 PLN03150 hypothetical protein; 96.8 0.0026 5.6E-08 68.9 6.9 107 416-542 419-528 (623)
60 PF12799 LRR_4: Leucine Rich r 96.7 0.0027 5.9E-08 41.1 4.0 37 390-428 1-37 (44)
61 KOG2739 Leucine-rich acidic nu 96.6 0.00054 1.2E-08 62.3 0.0 87 469-566 65-153 (260)
62 smart00367 LRR_CC Leucine-rich 96.5 0.0036 7.8E-08 35.2 3.1 22 495-516 2-23 (26)
63 PRK15386 type III secretion pr 96.5 0.006 1.3E-07 60.6 6.3 138 363-540 50-188 (426)
64 COG4886 Leucine-rich repeat (L 96.4 0.0025 5.4E-08 65.5 3.8 145 366-540 141-288 (394)
65 KOG2123 Uncharacterized conser 96.4 0.0011 2.5E-08 60.5 0.8 115 414-548 18-133 (388)
66 smart00367 LRR_CC Leucine-rich 96.3 0.0051 1.1E-07 34.6 3.0 22 469-490 2-23 (26)
67 COG4886 Leucine-rich repeat (L 96.3 0.0038 8.2E-08 64.1 4.1 171 365-567 116-288 (394)
68 KOG2739 Leucine-rich acidic nu 96.3 0.0011 2.4E-08 60.3 0.1 103 469-586 43-149 (260)
69 KOG1644 U2-associated snRNP A' 96.2 0.0033 7.3E-08 54.8 2.7 60 388-450 62-122 (233)
70 KOG1644 U2-associated snRNP A' 95.7 0.0051 1.1E-07 53.7 1.7 84 469-567 64-151 (233)
71 KOG4579 Leucine-rich repeat (L 95.5 0.0041 8.9E-08 50.7 0.3 84 385-478 48-132 (177)
72 PF12799 LRR_4: Leucine Rich r 95.1 0.029 6.2E-07 36.4 3.3 38 365-405 1-38 (44)
73 PLN03215 ascorbic acid mannose 95.0 0.015 3.2E-07 57.3 2.5 37 10-46 3-40 (373)
74 PF13516 LRR_6: Leucine Rich r 93.9 0.049 1.1E-06 29.8 2.0 21 495-516 2-22 (24)
75 PF13516 LRR_6: Leucine Rich r 93.8 0.067 1.5E-06 29.3 2.3 21 415-435 2-22 (24)
76 KOG4579 Leucine-rich repeat (L 93.5 0.027 5.8E-07 46.1 0.6 38 388-427 75-112 (177)
77 KOG2997 F-box protein FBX9 [Ge 93.4 0.047 1E-06 51.1 2.2 37 9-45 105-146 (366)
78 KOG0532 Leucine-rich repeat (L 92.9 0.0092 2E-07 60.4 -3.4 152 387-566 118-270 (722)
79 KOG0531 Protein phosphatase 1, 92.6 0.028 6.1E-07 57.9 -0.6 124 365-506 72-197 (414)
80 KOG0281 Beta-TrCP (transducin 92.6 0.067 1.5E-06 50.4 1.9 38 9-46 73-114 (499)
81 KOG0531 Protein phosphatase 1, 92.3 0.042 9.2E-07 56.6 0.2 121 363-505 93-218 (414)
82 smart00368 LRR_RI Leucine rich 90.5 0.39 8.5E-06 27.4 2.9 21 496-517 3-23 (28)
83 smart00368 LRR_RI Leucine rich 88.9 0.7 1.5E-05 26.4 3.2 23 415-437 2-24 (28)
84 KOG3763 mRNA export factor TAP 84.2 2.3 5.1E-05 43.7 6.0 86 491-587 214-308 (585)
85 PF13306 LRR_5: Leucine rich r 84.1 0.12 2.7E-06 43.1 -2.5 35 388-424 10-44 (129)
86 PF13013 F-box-like_2: F-box-l 81.9 1.6 3.4E-05 34.7 3.0 30 10-39 21-50 (109)
87 PF13306 LRR_5: Leucine rich r 81.5 0.34 7.5E-06 40.3 -0.8 57 364-424 11-67 (129)
88 KOG3763 mRNA export factor TAP 79.4 2.4 5.2E-05 43.6 4.2 65 439-507 216-282 (585)
89 KOG0274 Cdc4 and related F-box 77.8 0.68 1.5E-05 48.9 -0.1 44 9-52 106-149 (537)
90 PF13504 LRR_7: Leucine rich r 77.7 1.7 3.7E-05 21.4 1.4 8 418-425 4-11 (17)
91 KOG0532 Leucine-rich repeat (L 77.1 0.16 3.5E-06 51.9 -4.6 37 220-258 210-246 (722)
92 PF09372 PRANC: PRANC domain; 74.2 2.1 4.5E-05 33.5 1.8 26 9-34 70-95 (97)
93 PF00560 LRR_1: Leucine Rich R 64.7 2.5 5.3E-05 22.4 0.2 9 392-400 2-10 (22)
94 KOG3735 Tropomodulin and leiom 63.1 15 0.00033 35.4 5.2 81 439-521 196-280 (353)
95 PF14812 PBP1_TM: Transmembran 54.9 4 8.7E-05 30.1 0.0 6 635-640 48-53 (81)
96 KOG1832 HIV-1 Vpr-binding prot 51.3 5.7 0.00012 43.2 0.4 11 34-44 609-619 (1516)
97 smart00370 LRR Leucine-rich re 47.0 19 0.00041 19.8 2.0 10 391-400 3-12 (26)
98 smart00369 LRR_TYP Leucine-ric 47.0 19 0.00041 19.8 2.0 10 391-400 3-12 (26)
99 PF07723 LRR_2: Leucine Rich R 46.3 15 0.00032 20.5 1.4 8 471-478 2-9 (26)
100 KOG3735 Tropomodulin and leiom 38.6 75 0.0016 31.0 5.6 88 456-552 187-277 (353)
101 smart00365 LRR_SD22 Leucine-ri 37.6 30 0.00066 19.3 1.8 11 495-505 2-12 (26)
102 KOG4242 Predicted myosin-I-bin 35.1 30 0.00066 35.2 2.6 14 527-540 438-451 (553)
103 KOG3926 F-box proteins [Amino 30.9 57 0.0012 30.5 3.4 39 7-45 198-237 (332)
104 PHA02608 67 prohead core prote 26.9 45 0.00098 24.2 1.6 12 616-627 43-54 (80)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.97 E-value=3.3e-31 Score=247.15 Aligned_cols=219 Identities=24% Similarity=0.420 Sum_probs=124.5
Q ss_pred HhCCCccEEEecCCCCCCHHHHHHHHHhCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEcccCCCCCHHHHHHhh-c
Q 006538 310 DKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLA-S 388 (641)
Q Consensus 310 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~ 388 (641)
+++..++.+.+.||.....+.+..+...++-+.++++.+|..+++.....+...+..|+.|..++|..+++..+..++ +
T Consensus 239 rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~ 318 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH 318 (483)
T ss_pred ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC
Confidence 334444444444444444444444444444444444444444444444444444445555555555444444444444 4
Q ss_pred CCCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCcCChHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHhccCCC
Q 006538 389 NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSK 468 (641)
Q Consensus 389 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~ 468 (641)
+++|+.|.+++|..+ ++.++..+.. .++.|+.+++.+|..+++..+..++.+|
T Consensus 319 ~~~L~~l~l~~c~~f------------------------sd~~ft~l~r-n~~~Le~l~~e~~~~~~d~tL~sls~~C-- 371 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQF------------------------SDRGFTMLGR-NCPHLERLDLEECGLITDGTLASLSRNC-- 371 (483)
T ss_pred CCceEEEeccccchh------------------------hhhhhhhhhc-CChhhhhhcccccceehhhhHhhhccCC--
Confidence 444444444444433 3334444444 5666666666666666666666666666
Q ss_pred CCccEEecCCCCCCCHHHHHHHHh---cCCCCCEEeccCCCCCCHHHHHHHHhccccCcccCCCCccEEeccCCCCCCHH
Q 006538 469 LQLQELDLSNLPHLSDNGILTLAT---CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL 545 (641)
Q Consensus 469 ~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~ 545 (641)
+.|+.+.++.|..++|.++..+.. +...|+.+.+.+|+.+++..++.+. .|++|+.+++.+|..++..
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~---------~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS---------ICRNLERIELIDCQDVTKE 442 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh---------hCcccceeeeechhhhhhh
Confidence 667777777766666666655432 3456777777777777777777666 6677777777777777777
Q ss_pred HHHHhhCCCCCCceEEEecC
Q 006538 546 AFRWLKKPYFPRLRWLGVTG 565 (641)
Q Consensus 546 ~~~~l~~~~~~~L~~L~l~~ 565 (641)
++..+.. .+|++++..+..
T Consensus 443 ~i~~~~~-~lp~i~v~a~~a 461 (483)
T KOG4341|consen 443 AISRFAT-HLPNIKVHAYFA 461 (483)
T ss_pred hhHHHHh-hCccceehhhcc
Confidence 7766665 566666665544
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.94 E-value=4.6e-27 Score=219.57 Aligned_cols=317 Identities=22% Similarity=0.342 Sum_probs=263.6
Q ss_pred CCccEEEeec-cCCCHHHHHHHHhcCCCCcEEecCCCCCCCCccccccchHHHHhhh-cCCCCcEEEecccccccccccc
Q 006538 221 PGIQKLCLSV-DYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQIN-QHGKLKHLSLIRSQEFLITYFR 298 (641)
Q Consensus 221 ~~L~~L~L~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~~~ 298 (641)
..|+.|.+++ ..+.+..+..+...||++++|.+.+| ..+++..+..++ .|++|++|++ ..|.
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc--------~~iTd~s~~sla~~C~~l~~l~L--------~~c~ 201 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGC--------KKITDSSLLSLARYCRKLRHLNL--------HSCS 201 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcc--------eeccHHHHHHHHHhcchhhhhhh--------cccc
Confidence 4688888885 56778888888889999999999998 577887777776 7888888888 4577
Q ss_pred ccChhHHHHHHHhCCCccEEEecCCCCCCHHHHHHHHHhCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEcccCCCC
Q 006538 299 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 378 (641)
Q Consensus 299 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l 378 (641)
.+++..+..+...|++|++|++++|+.+...++..+.+++..++.+.+.||.......+..+...++-+.++++..|..+
T Consensus 202 ~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~l 281 (483)
T KOG4341|consen 202 SITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQL 281 (483)
T ss_pred hhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccc
Confidence 88888888888888888888888888888888888888888888887778888777777777777777777777777777
Q ss_pred CHHHHHHhh-cCCCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCcCChHHHHHHHHhcCCCccEEecCCCCCCCHH
Q 006538 379 TNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 457 (641)
Q Consensus 379 ~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~ 457 (641)
+++++..+. .+..|+.|..++|.. +++..+..+.. ++++|+.|.+.+|..+++.
T Consensus 282 TD~~~~~i~~~c~~lq~l~~s~~t~------------------------~~d~~l~aLg~-~~~~L~~l~l~~c~~fsd~ 336 (483)
T KOG4341|consen 282 TDEDLWLIACGCHALQVLCYSSCTD------------------------ITDEVLWALGQ-HCHNLQVLELSGCQQFSDR 336 (483)
T ss_pred cchHHHHHhhhhhHhhhhcccCCCC------------------------CchHHHHHHhc-CCCceEEEeccccchhhhh
Confidence 777765555 566666666666644 44455566666 7899999999999999999
Q ss_pred HHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhccccCcccCCCCccEEecc
Q 006538 458 CISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLY 537 (641)
Q Consensus 458 ~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 537 (641)
++..+++.| +.|+.+++..|..+.+..+..++.+|+.|++|.+++|..++|.|+.++....- ....|+.+.++
T Consensus 337 ~ft~l~rn~--~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c-----~~~~l~~lEL~ 409 (483)
T KOG4341|consen 337 GFTMLGRNC--PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC-----SLEGLEVLELD 409 (483)
T ss_pred hhhhhhcCC--hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc-----cccccceeeec
Confidence 999999999 99999999999888888899999999999999999999999999888876433 55779999999
Q ss_pred CCCCCCHHHHHHhhCCCCCCceEEEecCCC--CHHHHHHHHhhCCCeEEecC
Q 006538 538 NCGGITQLAFRWLKKPYFPRLRWLGVTGSV--NRDILDALARSRPFLNVACR 587 (641)
Q Consensus 538 ~c~~~~~~~~~~l~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~l~~~~~ 587 (641)
+|+.+++..+..+.. |++|+.+++.+|. ..+.+..+...+|.+++-..
T Consensus 410 n~p~i~d~~Le~l~~--c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 410 NCPLITDATLEHLSI--CRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred CCCCchHHHHHHHhh--CcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 999999999999988 9999999999994 68889999999998887543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=2.1e-24 Score=246.99 Aligned_cols=106 Identities=25% Similarity=0.292 Sum_probs=67.0
Q ss_pred hcccccccccCCCCChhhhhccCCCCCCceEEEeecCCCChHHHHhhhccccceecccCCCCccHHHHHHHHhcCCCCce
Q 006538 49 LSFLTSFHLLDIALSTEIIKPLLPPNPYLRSLKVDCGKLDDSAIELMLRPTLHELCLHNCADFSGKLLSEIGGKCKDLRS 128 (641)
Q Consensus 49 ~~~l~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~ 128 (641)
.+.++.|+++++.+.......++..+++|+.|+++.+.++.... ....++|++|++++|. +....... +..+++|+.
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~l~~L~~L~Ls~n~-~~~~~p~~-~~~l~~L~~ 168 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP-RGSIPNLETLDLSNNM-LSGEIPND-IGSFSSLKV 168 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC-ccccCCCCEEECcCCc-ccccCChH-HhcCCCCCE
Confidence 56788899999887543333455578899999998877764211 1123788888888886 43222223 357888888
Q ss_pred EeccccccccCcccchhhHHHHHhcCCccceeeccc
Q 006538 129 LYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMF 164 (641)
Q Consensus 129 L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 164 (641)
|+++++.... .++..+.++++|+.|+++.
T Consensus 169 L~L~~n~l~~-------~~p~~~~~l~~L~~L~L~~ 197 (968)
T PLN00113 169 LDLGGNVLVG-------KIPNSLTNLTSLEFLTLAS 197 (968)
T ss_pred EECccCcccc-------cCChhhhhCcCCCeeeccC
Confidence 8887652110 1122345667777777764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=4.3e-24 Score=244.50 Aligned_cols=469 Identities=18% Similarity=0.162 Sum_probs=238.5
Q ss_pred hcccHHHHHHHHhcccccccccCCCCChhhhhccCCCCCCceEEEeecCCCChHHH-Hhhhc-cccceecccCCCCccHH
Q 006538 37 TCSTFRACAAQILSFLTSFHLLDIALSTEIIKPLLPPNPYLRSLKVDCGKLDDSAI-ELMLR-PTLHELCLHNCADFSGK 114 (641)
Q Consensus 37 vcr~w~~~~~~~~~~l~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~-~~L~~L~L~~~~~~~~~ 114 (641)
.|..|..+.......++.++++++.+... +...+..+++|+.|+|+.+.+...-. ..+.. .+|++|++++|. +...
T Consensus 56 ~~c~w~gv~c~~~~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~-l~~~ 133 (968)
T PLN00113 56 DVCLWQGITCNNSSRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN-FTGS 133 (968)
T ss_pred CCCcCcceecCCCCcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCc-cccc
Confidence 34467766533345688899998876542 24456689999999999888764322 23323 899999999986 4321
Q ss_pred HHHHHHhcCCCCceEeccccccccCcccchhhHHHHHhcCCccceeeccccccc-ccchhhHHHHhhhcCCCCeEecccc
Q 006538 115 LLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISL-FLRHNFARVWALASEKLTSLEIGYI 193 (641)
Q Consensus 115 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~l~~~~~~~L~~L~l~~~ 193 (641)
. . ...+++|++|+++++... ..+...+..+++|+.|+++.+... ..+..+. ..++|++|++++.
T Consensus 134 ~-p--~~~l~~L~~L~Ls~n~~~-------~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~L~~n 198 (968)
T PLN00113 134 I-P--RGSIPNLETLDLSNNMLS-------GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-----NLTSLEFLTLASN 198 (968)
T ss_pred c-C--ccccCCCCEEECcCCccc-------ccCChHHhcCCCCCEEECccCcccccCChhhh-----hCcCCCeeeccCC
Confidence 1 1 136789999999875221 122344677899999999854321 1112221 2378889988753
Q ss_pred ChH-----hHhhhc---CCCCCCCCCCCCc--CCCCCCCccEEEeeccCCCHHHHHHHHhcCCCCcEEecCCCCCCCCcc
Q 006538 194 SSV-----MVTELL---SPNVEPHQSPNQI--RPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRI 263 (641)
Q Consensus 194 ~~~-----~~~~~~---~~~~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 263 (641)
... .+..+. ...+....+.... .+..+++|++|+++++.+....... ...+++|++|++++|.
T Consensus 199 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~------ 271 (968)
T PLN00113 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNK------ 271 (968)
T ss_pred CCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCe------
Confidence 211 111110 0111111111111 1223555666666555443322222 2345556666665542
Q ss_pred ccccchHHHHhhhcCCCCcEEEeccccccccccccccChhHHHHHHHhCCCccEEEecCCCCCCHHHHHHHHHhCCCccE
Q 006538 264 TFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYK 343 (641)
Q Consensus 264 ~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 343 (641)
+.......+..+++|+.|+++.+ .+... +......+++|+.|++++| .+... +...+..+++|+.
T Consensus 272 ---l~~~~p~~l~~l~~L~~L~Ls~n---------~l~~~-~p~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~ 336 (968)
T PLN00113 272 ---LSGPIPPSIFSLQKLISLDLSDN---------SLSGE-IPELVIQLQNLEILHLFSN-NFTGK-IPVALTSLPRLQV 336 (968)
T ss_pred ---eeccCchhHhhccCcCEEECcCC---------eeccC-CChhHcCCCCCcEEECCCC-ccCCc-CChhHhcCCCCCE
Confidence 11111122334455555555321 11111 1112223455555555553 22221 1112334555555
Q ss_pred EEecCCCCCCHHHHHHHHhcCCCCCEEEcccCC-----------------------CCCHHHHHHhhcCCCCCEEecCCC
Q 006538 344 LRVSHGTQLTDLVFHDISATSLSLTHVCLRWCN-----------------------LLTNHAIKSLASNTGIKVLDLRDC 400 (641)
Q Consensus 344 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-----------------------~l~~~~~~~l~~~~~L~~L~l~~~ 400 (641)
|++++|.. ... +.......++|+.|+++++. .+.......+..+++|+.|++++|
T Consensus 337 L~L~~n~l-~~~-~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n 414 (968)
T PLN00113 337 LQLWSNKF-SGE-IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414 (968)
T ss_pred EECcCCCC-cCc-CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC
Confidence 55555321 110 00111223455555554421 111111122334455555555555
Q ss_pred CCCChhhhHhhhCCCCCcEEEccCCcCChHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCC
Q 006538 401 KNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLP 480 (641)
Q Consensus 401 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~~L~~L~l~~~~ 480 (641)
.++......+..+++|+.|++++|.++......+. .+++|+.|++++|..... +......++|+.|++++|
T Consensus 415 -~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~n~~~~~-----~p~~~~~~~L~~L~ls~n- 485 (968)
T PLN00113 415 -SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW--DMPSLQMLSLARNKFFGG-----LPDSFGSKRLENLDLSRN- 485 (968)
T ss_pred -EeeeECChhHhcCCCCCEEECcCCcccCccChhhc--cCCCCcEEECcCceeeee-----cCcccccccceEEECcCC-
Confidence 33333333445555566666665554432222222 256666666666542110 000011267888888774
Q ss_pred CCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhccccCcccCCCCccEEeccCCCCCCHHHHHHhhCCCCCCceE
Q 006538 481 HLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRW 560 (641)
Q Consensus 481 ~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~~L~~ 560 (641)
.++......+ ..+++|+.|++++| .++......+. .+++|++|++++|. ++......+.. +++|+.
T Consensus 486 ~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~p~~~~---------~l~~L~~L~Ls~N~-l~~~~p~~~~~--l~~L~~ 551 (968)
T PLN00113 486 QFSGAVPRKL-GSLSELMQLKLSEN-KLSGEIPDELS---------SCKKLVSLDLSHNQ-LSGQIPASFSE--MPVLSQ 551 (968)
T ss_pred ccCCccChhh-hhhhccCEEECcCC-cceeeCChHHc---------CccCCCEEECCCCc-ccccCChhHhC--cccCCE
Confidence 5542222222 25778888888888 45543333333 67889999999987 55444444544 889999
Q ss_pred EEecCCCCH
Q 006538 561 LGVTGSVNR 569 (641)
Q Consensus 561 L~l~~~~~~ 569 (641)
|++++|...
T Consensus 552 L~Ls~N~l~ 560 (968)
T PLN00113 552 LDLSQNQLS 560 (968)
T ss_pred EECCCCccc
Confidence 999999643
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.5e-24 Score=210.67 Aligned_cols=371 Identities=20% Similarity=0.183 Sum_probs=174.6
Q ss_pred CCCCc-eEEEeecCCCChHHHHhh---hccccceecccCCCCccHHHHHHHHhcCCCCceEeccccccccCcccchhhHH
Q 006538 73 PNPYL-RSLKVDCGKLDDSAIELM---LRPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLE 148 (641)
Q Consensus 73 ~~~~L-~~L~L~~~~~~~~~~~~~---~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 148 (641)
.|+.. +.|+.+..++...+...+ ..+.-+.|++++|. +....+..+ .++++|+++++..+ ....++
T Consensus 49 ~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNk-l~~id~~~f-~nl~nLq~v~l~~N--------~Lt~IP 118 (873)
T KOG4194|consen 49 TCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNK-LSHIDFEFF-YNLPNLQEVNLNKN--------ELTRIP 118 (873)
T ss_pred cCCCCceeeecCccccccccccccCCcCccceeeeeccccc-cccCcHHHH-hcCCcceeeeeccc--------hhhhcc
Confidence 45543 455556666555433333 34677889998887 666666555 58899999998754 223333
Q ss_pred HHHhcCCccceeecccccccccchhhHHHHhhhcCCCCeEeccccChHhHhhhcCCCCCCCCCCCCcCCCCCCCccEEEe
Q 006538 149 ELLNGCPQLEALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCL 228 (641)
Q Consensus 149 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 228 (641)
.+.....+|++|.|..+ .+....-+.+.. .+.|++|+++..--..+. ...++.-.++++|+|
T Consensus 119 ~f~~~sghl~~L~L~~N--~I~sv~se~L~~--l~alrslDLSrN~is~i~--------------~~sfp~~~ni~~L~L 180 (873)
T KOG4194|consen 119 RFGHESGHLEKLDLRHN--LISSVTSEELSA--LPALRSLDLSRNLISEIP--------------KPSFPAKVNIKKLNL 180 (873)
T ss_pred cccccccceeEEeeecc--ccccccHHHHHh--Hhhhhhhhhhhchhhccc--------------CCCCCCCCCceEEee
Confidence 44445567888888743 222222222211 155666666531100000 001333466777777
Q ss_pred eccCCCHHHHHHHHhcCCCCcEEecCCCCCCCCccccccchHHHHhhhcCCCCcEEEeccccccccccccccChhHHHHH
Q 006538 229 SVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLM 308 (641)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~ 308 (641)
++|.+++-....+ ..+.+|..|.|+.| .++.--...+.++++|+.|++. .+.+.-... ..
T Consensus 181 a~N~It~l~~~~F-~~lnsL~tlkLsrN---------rittLp~r~Fk~L~~L~~LdLn---------rN~irive~-lt 240 (873)
T KOG4194|consen 181 ASNRITTLETGHF-DSLNSLLTLKLSRN---------RITTLPQRSFKRLPKLESLDLN---------RNRIRIVEG-LT 240 (873)
T ss_pred ccccccccccccc-cccchheeeecccC---------cccccCHHHhhhcchhhhhhcc---------ccceeeehh-hh
Confidence 7777666555444 23456677777665 3333223334445666666653 222211101 11
Q ss_pred HHhCCCccEEEecCCCCCCHHHHHHHHHhCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEcccCCCCCHHHHHHhhc
Q 006538 309 ADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLAS 388 (641)
Q Consensus 309 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 388 (641)
++.+++|+.|.+.. +.+.... ...+..|.++++|+|+.+ .+....-. ..-.+.+|+.|++++ +.+..........
T Consensus 241 FqgL~Sl~nlklqr-N~I~kL~-DG~Fy~l~kme~l~L~~N-~l~~vn~g-~lfgLt~L~~L~lS~-NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 241 FQGLPSLQNLKLQR-NDISKLD-DGAFYGLEKMEHLNLETN-RLQAVNEG-WLFGLTSLEQLDLSY-NAIQRIHIDSWSF 315 (873)
T ss_pred hcCchhhhhhhhhh-cCccccc-Ccceeeecccceeecccc-hhhhhhcc-cccccchhhhhccch-hhhheeecchhhh
Confidence 23455555555555 2333221 112334555555555542 21111111 011234555555555 3443333333334
Q ss_pred CCCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCcCChHHHHHHHHhcCCCccEEecCCCCCCC---HHHHHHHhcc
Q 006538 389 NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT---DKCISALFDG 465 (641)
Q Consensus 389 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~---~~~~~~l~~~ 465 (641)
+++|++|++++| .++.....++..+..|++|+|+.|+++...-..+.. +.+|+.|+|..+. ++ .++... +.+
T Consensus 316 tqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~--lssL~~LdLr~N~-ls~~IEDaa~~-f~g 390 (873)
T KOG4194|consen 316 TQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG--LSSLHKLDLRSNE-LSWCIEDAAVA-FNG 390 (873)
T ss_pred cccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH--hhhhhhhcCcCCe-EEEEEecchhh-hcc
Confidence 555555555554 455444445555555555555555444322222222 4555555554421 22 111111 111
Q ss_pred CCCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEeccCC
Q 006538 466 TSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQC 505 (641)
Q Consensus 466 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 505 (641)
++.|+.|++.+ |++....-.++. ++++|++|+|.+|
T Consensus 391 --l~~LrkL~l~g-Nqlk~I~krAfs-gl~~LE~LdL~~N 426 (873)
T KOG4194|consen 391 --LPSLRKLRLTG-NQLKSIPKRAFS-GLEALEHLDLGDN 426 (873)
T ss_pred --chhhhheeecC-ceeeecchhhhc-cCcccceecCCCC
Confidence 15555555555 344433222222 4555555555555
No 6
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.3e-22 Score=181.30 Aligned_cols=185 Identities=21% Similarity=0.264 Sum_probs=112.3
Q ss_pred ccEEEeeccCCCHHHHHHHHhcCCCCcEEecCCCCCCCCccccccchHHHHhhhcCCCCcEEEeccccccccccccccCh
Q 006538 223 IQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVND 302 (641)
Q Consensus 223 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 302 (641)
|++|+|+...++...+..+...|.+|+.|.+.|+ .+.+.....++...+|+.|+++ .+++++.
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~---------~LdD~I~~~iAkN~~L~~lnls--------m~sG~t~ 249 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL---------RLDDPIVNTIAKNSNLVRLNLS--------MCSGFTE 249 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhcccccc---------ccCcHHHHHHhccccceeeccc--------cccccch
Confidence 4444444444555555555555666666666663 4444455555556666666663 3566666
Q ss_pred hHHHHHHHhCCCccEEEecCCCCCCHHHHHHHH-HhCCCccEEEecCCCC-CCHHHHHHHHhcCCCCCEEEcccCCCCCH
Q 006538 303 LGILLMADKCASMESICLGGFCRVTDTGFKTIL-HSCSNLYKLRVSHGTQ-LTDLVFHDISATSLSLTHVCLRWCNLLTN 380 (641)
Q Consensus 303 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 380 (641)
.++..+...|..|..|+|+.|...++. ...+. .--++|+.|+++|+.. +....+..+.+.||+|.+|+|+.|..+++
T Consensus 250 n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 250 NALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred hHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc
Confidence 667777777777777777776544444 22222 2235777777776532 33344555666777777777777777776
Q ss_pred HHHHHhhcCCCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCC
Q 006538 381 HAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS 425 (641)
Q Consensus 381 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 425 (641)
..+..+.+++.|++|.++.|..+....+-.+...|+|.+|++.++
T Consensus 329 ~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 329 DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 666666677777777777776665555555556666666666654
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.3e-21 Score=190.27 Aligned_cols=372 Identities=21% Similarity=0.227 Sum_probs=245.6
Q ss_pred CCceEeccccccccCcccchhhHHHHHhcCCccceeecccccccccchhhHHHHhh--hcCCCCeEeccc--cChHhHhh
Q 006538 125 DLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFARVWAL--ASEKLTSLEIGY--ISSVMVTE 200 (641)
Q Consensus 125 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~--~~~~L~~L~l~~--~~~~~~~~ 200 (641)
.-+.|+++++. +..... ..+.+.++|+++.+..+.. ..++.. ....|+.|++.. ++.....+
T Consensus 79 ~t~~LdlsnNk------l~~id~-~~f~nl~nLq~v~l~~N~L-------t~IP~f~~~sghl~~L~L~~N~I~sv~se~ 144 (873)
T KOG4194|consen 79 QTQTLDLSNNK------LSHIDF-EFFYNLPNLQEVNLNKNEL-------TRIPRFGHESGHLEKLDLRHNLISSVTSEE 144 (873)
T ss_pred ceeeeeccccc------cccCcH-HHHhcCCcceeeeeccchh-------hhcccccccccceeEEeeeccccccccHHH
Confidence 45678887641 122222 2356778999988874322 222111 125678887764 33322222
Q ss_pred hcCCCCCCCCCCCCcCCCCCCCccEEEeeccCCCHHHHHHHHhcCCCCcEEecCCCCCCCCccccccchHHHHhhhcCCC
Q 006538 201 LLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGK 280 (641)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 280 (641)
+..++.|+.|+|+.|.+..-....+ ..-+++++|+|.+| .++.-....+..+.+
T Consensus 145 ----------------L~~l~alrslDLSrN~is~i~~~sf-p~~~ni~~L~La~N---------~It~l~~~~F~~lns 198 (873)
T KOG4194|consen 145 ----------------LSALPALRSLDLSRNLISEIPKPSF-PAKVNIKKLNLASN---------RITTLETGHFDSLNS 198 (873)
T ss_pred ----------------HHhHhhhhhhhhhhchhhcccCCCC-CCCCCceEEeeccc---------cccccccccccccch
Confidence 2336888888888776655333332 23457888888886 455544455556678
Q ss_pred CcEEEeccccccccccccccChhHHHHHHHhCCCccEEEecCCCCCCHHHHHHHHHhCCCccEEEecCCC--CCCHHHHH
Q 006538 281 LKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGT--QLTDLVFH 358 (641)
Q Consensus 281 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~--~l~~~~~~ 358 (641)
|..|.++ .+.++...... ++++++|+.|+|.. +.+....... ++++++|+.|.+..+. .+++..+
T Consensus 199 L~tlkLs---------rNrittLp~r~-Fk~L~~L~~LdLnr-N~irive~lt-FqgL~Sl~nlklqrN~I~kL~DG~F- 265 (873)
T KOG4194|consen 199 LLTLKLS---------RNRITTLPQRS-FKRLPKLESLDLNR-NRIRIVEGLT-FQGLPSLQNLKLQRNDISKLDDGAF- 265 (873)
T ss_pred heeeecc---------cCcccccCHHH-hhhcchhhhhhccc-cceeeehhhh-hcCchhhhhhhhhhcCcccccCcce-
Confidence 8888885 45555554443 34588899999888 4555432222 6778888888887642 2333322
Q ss_pred HHHhcCCCCCEEEcccCCCCCHHHHHHhhcCCCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCcCChHHHHHHHHh
Q 006538 359 DISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLT 438 (641)
Q Consensus 359 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~ 438 (641)
-.+.++++|+|.. +.+....-..+.++++|+.|++++| .+....+.....+++|++|+|++|.++...-.++..
T Consensus 266 ---y~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~- 339 (873)
T KOG4194|consen 266 ---YGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV- 339 (873)
T ss_pred ---eeecccceeeccc-chhhhhhcccccccchhhhhccchh-hhheeecchhhhcccceeEeccccccccCChhHHHH-
Confidence 2456899999988 6777666666778999999999998 787777777888999999999999877665556655
Q ss_pred cCCCccEEecCCCCCCC---HHHHHHHhccCCCCCccEEecCCCCCCC---HHHHHHHHhcCCCCCEEeccCCCCCCHHH
Q 006538 439 VITSLVKLSLRGCKRLT---DKCISALFDGTSKLQLQELDLSNLPHLS---DNGILTLATCRVPISELRVRQCPLIGDTS 512 (641)
Q Consensus 439 ~~~~L~~L~l~~c~~l~---~~~~~~l~~~~~~~~L~~L~l~~~~~l~---~~~~~~l~~~~~~L~~L~l~~~~~l~~~~ 512 (641)
+..|+.|+|+.+. ++ +..+..+ ++|++|||.+ |.++ .++.. .++++++|++|.+.+| ++....
T Consensus 340 -L~~Le~LnLs~Ns-i~~l~e~af~~l------ssL~~LdLr~-N~ls~~IEDaa~-~f~gl~~LrkL~l~gN-qlk~I~ 408 (873)
T KOG4194|consen 340 -LSQLEELNLSHNS-IDHLAEGAFVGL------SSLHKLDLRS-NELSWCIEDAAV-AFNGLPSLRKLRLTGN-QLKSIP 408 (873)
T ss_pred -HHHhhhhcccccc-hHHHHhhHHHHh------hhhhhhcCcC-CeEEEEEecchh-hhccchhhhheeecCc-eeeecc
Confidence 7889999998854 43 4445555 8999999998 6766 22222 3457999999999999 577666
Q ss_pred HHHHHhccccCcccCCCCccEEeccCCCCCCHHHHHHhhCCCCCCceEEEe------cCCCCHHHHHHHHhhC
Q 006538 513 VIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGV------TGSVNRDILDALARSR 579 (641)
Q Consensus 513 ~~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~~L~~L~l------~~~~~~~~~~~~~~~~ 579 (641)
-.++. .+++|++|++.++. +-.....++.. + .|++|.+ .+|....-.+++.+.+
T Consensus 409 krAfs---------gl~~LE~LdL~~Na-iaSIq~nAFe~--m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~ 468 (873)
T KOG4194|consen 409 KRAFS---------GLEALEHLDLGDNA-IASIQPNAFEP--M-ELKELVMNSSSFLCDCQLKWLAQWLYRRK 468 (873)
T ss_pred hhhhc---------cCcccceecCCCCc-ceeeccccccc--c-hhhhhhhcccceEEeccHHHHHHHHHhcc
Confidence 55655 78899999999987 65555666655 3 7777754 4554444445555543
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=1.4e-16 Score=158.90 Aligned_cols=167 Identities=26% Similarity=0.248 Sum_probs=88.0
Q ss_pred CCCCEEecCCCCCCChhhh----HhhhCCCCCcEEEccCCcCChHHHHHHHH--hcCCCccEEecCCCCCCCHHHHHHHh
Q 006538 390 TGIKVLDLRDCKNLGDEAL----RAISSLPQLKILLLDGSDISDVGVSYLRL--TVITSLVKLSLRGCKRLTDKCISALF 463 (641)
Q Consensus 390 ~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~l~~~~~~~l~~--~~~~~L~~L~l~~c~~l~~~~~~~l~ 463 (641)
++|+.|++++| .++..+. ..+..+++|+.|++++|.+++.++..+.. ..+++|++|++++|. +++.+...+.
T Consensus 137 ~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~ 214 (319)
T cd00116 137 PALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALA 214 (319)
T ss_pred CCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHH
Confidence 56666666665 3442222 22334556666666666666554443332 023466666666653 5544444333
Q ss_pred cc-CCCCCccEEecCCCCCCCHHHHHHHHhcC----CCCCEEeccCCCCCCHHHHHHHHhccccCcccCCCCccEEeccC
Q 006538 464 DG-TSKLQLQELDLSNLPHLSDNGILTLATCR----VPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYN 538 (641)
Q Consensus 464 ~~-~~~~~L~~L~l~~~~~l~~~~~~~l~~~~----~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 538 (641)
.. ..+++|++|++++ +.+++.++..++..+ +.|++|++++| .+++.+...+...+. .+++|+++++++
T Consensus 215 ~~~~~~~~L~~L~ls~-n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~-----~~~~L~~l~l~~ 287 (319)
T cd00116 215 ETLASLKSLEVLNLGD-NNLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLA-----EKESLLELDLRG 287 (319)
T ss_pred HHhcccCCCCEEecCC-CcCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHh-----cCCCccEEECCC
Confidence 22 1126677777766 356655555544433 56777777766 466555555444332 446677777776
Q ss_pred CCCCCHHHHHHhhC--CCC-CCceEEEecCC
Q 006538 539 CGGITQLAFRWLKK--PYF-PRLRWLGVTGS 566 (641)
Q Consensus 539 c~~~~~~~~~~l~~--~~~-~~L~~L~l~~~ 566 (641)
|. +++.+...+.. ... +.|++|++.++
T Consensus 288 N~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 288 NK-FGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred CC-CcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 65 66554333332 112 46666666554
No 9
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.7e-17 Score=147.60 Aligned_cols=254 Identities=19% Similarity=0.257 Sum_probs=192.6
Q ss_pred CccEEEecCCCCCCHHHHHHHHHhCCCccEEEecCCCCCCHHHHHH-HHhcCCCCCEEEcccCCCCCHHHHHH-hhcCCC
Q 006538 314 SMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHD-ISATSLSLTHVCLRWCNLLTNHAIKS-LASNTG 391 (641)
Q Consensus 314 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~~~~ 391 (641)
.-+.+++.+ ..+.......+.+ .....+++.. ..+.+..+.. ....-..|+.|+|+. ..++...+.. +..|.+
T Consensus 137 lW~~lDl~~-r~i~p~~l~~l~~--rgV~v~Rlar-~~~~~prlae~~~~frsRlq~lDLS~-s~it~stl~~iLs~C~k 211 (419)
T KOG2120|consen 137 LWQTLDLTG-RNIHPDVLGRLLS--RGVIVFRLAR-SFMDQPRLAEHFSPFRSRLQHLDLSN-SVITVSTLHGILSQCSK 211 (419)
T ss_pred ceeeeccCC-CccChhHHHHHHh--CCeEEEEcch-hhhcCchhhhhhhhhhhhhHHhhcch-hheeHHHHHHHHHHHHh
Confidence 456777777 5666555555443 4555666654 2222222222 222224688999988 5666666554 448999
Q ss_pred CCEEecCCCCCCChhhhHhhhCCCCCcEEEccCC-cCChHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHhccCCCCC
Q 006538 392 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQ 470 (641)
Q Consensus 392 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~~ 470 (641)
|+.|.+.+. .+.+.....+++..+|+.|++++| +++..++..+.. .|+.|.+|+++.|...++. ......+ ..++
T Consensus 212 Lk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~-scs~L~~LNlsWc~l~~~~-Vtv~V~h-ise~ 287 (419)
T KOG2120|consen 212 LKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLS-SCSRLDELNLSWCFLFTEK-VTVAVAH-ISET 287 (419)
T ss_pred hhhcccccc-ccCcHHHHHHhccccceeeccccccccchhHHHHHHH-hhhhHhhcCchHhhccchh-hhHHHhh-hchh
Confidence 999999998 788888888999999999999997 799888888888 8999999999999855555 3333222 1289
Q ss_pred ccEEecCCCC-CCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhccccCcccCCCCccEEeccCCCCCCHHHHHH
Q 006538 471 LQELDLSNLP-HLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRW 549 (641)
Q Consensus 471 L~~L~l~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~ 549 (641)
|+.|++++|- ++.+..+..+.+.||+|.+|++++|..+++..+..+. .++.|++|.++.|..+....+..
T Consensus 288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~---------kf~~L~~lSlsRCY~i~p~~~~~ 358 (419)
T KOG2120|consen 288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF---------KFNYLQHLSLSRCYDIIPETLLE 358 (419)
T ss_pred hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH---------hcchheeeehhhhcCCChHHeee
Confidence 9999999973 4556677778889999999999999888886666666 78999999999999998887777
Q ss_pred hhCCCCCCceEEEecCCCCHHHHHHHHhhCCCeEEecC
Q 006538 550 LKKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACR 587 (641)
Q Consensus 550 l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 587 (641)
+.. .|+|.+|++.||..+..++.+...+|++.+.+.
T Consensus 359 l~s--~psl~yLdv~g~vsdt~mel~~e~~~~lkin~q 394 (419)
T KOG2120|consen 359 LNS--KPSLVYLDVFGCVSDTTMELLKEMLSHLKINCQ 394 (419)
T ss_pred ecc--CcceEEEEeccccCchHHHHHHHhCccccccce
Confidence 765 899999999999988889999999998887654
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=5.2e-15 Score=147.62 Aligned_cols=269 Identities=22% Similarity=0.206 Sum_probs=180.8
Q ss_pred ccccChhHHHHHHHhCCCccEEEecCCCCCCHHHH---HHHHHhCCCccEEEecCCCCCC-HHHHH---HHHhcCCCCCE
Q 006538 297 FRRVNDLGILLMADKCASMESICLGGFCRVTDTGF---KTILHSCSNLYKLRVSHGTQLT-DLVFH---DISATSLSLTH 369 (641)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~---~~l~~~~~~L~~L~l~~~~~l~-~~~~~---~~~~~~~~L~~ 369 (641)
+..+++.....+...+.+|+.|++.+| .++..+. ...+...++|++++++++..-. ...+. .....+++|+.
T Consensus 7 ~~~l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 85 (319)
T cd00116 7 GELLKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQE 85 (319)
T ss_pred cCcccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeE
Confidence 334444444455566777999999995 5655443 3345566789999998754321 22222 22334679999
Q ss_pred EEcccCCCCCHHHHHHhhcC---CCCCEEecCCCCCCChhhhHh----hhCC-CCCcEEEccCCcCChHHHHHHHH--hc
Q 006538 370 VCLRWCNLLTNHAIKSLASN---TGIKVLDLRDCKNLGDEALRA----ISSL-PQLKILLLDGSDISDVGVSYLRL--TV 439 (641)
Q Consensus 370 L~l~~~~~l~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~l~~~~~~~l~~--~~ 439 (641)
|++++|.. .......+..+ ++|++|++++| .+++.+... +..+ ++|+.|++++|.++..+...+.. ..
T Consensus 86 L~l~~~~~-~~~~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 163 (319)
T cd00116 86 LDLSDNAL-GPDGCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRA 163 (319)
T ss_pred EEccCCCC-ChhHHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHh
Confidence 99998643 33333333322 56999999998 677554443 4466 89999999999998655443332 14
Q ss_pred CCCccEEecCCCCCCCHHHHHHHhccC-CCCCccEEecCCCCCCCHHHHHHH---HhcCCCCCEEeccCCCCCCHHHHHH
Q 006538 440 ITSLVKLSLRGCKRLTDKCISALFDGT-SKLQLQELDLSNLPHLSDNGILTL---ATCRVPISELRVRQCPLIGDTSVIA 515 (641)
Q Consensus 440 ~~~L~~L~l~~c~~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~l~~~~~~~ 515 (641)
+++|++|++++|. +++.++..++... .+++|++|++++| .+++.++..+ ...+++|++|++++| .+++.++..
T Consensus 164 ~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~ 240 (319)
T cd00116 164 NRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAA 240 (319)
T ss_pred CCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHH
Confidence 6789999999975 8776666554331 2269999999995 7776665543 346789999999999 599888887
Q ss_pred HHhccccCcccCCCCccEEeccCCCCCCHHHHHHhhC--CCCCCceEEEecCCC-CHHHHHHHH
Q 006538 516 LASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK--PYFPRLRWLGVTGSV-NRDILDALA 576 (641)
Q Consensus 516 l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~l~~--~~~~~L~~L~l~~~~-~~~~~~~~~ 576 (641)
++..+.. ..+.|++|++++|. +++.+...+.. +.+++|+++++++|. ..+....+.
T Consensus 241 l~~~~~~----~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~ 299 (319)
T cd00116 241 LASALLS----PNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA 299 (319)
T ss_pred HHHHHhc----cCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence 7763221 24789999999996 87655544433 236899999999994 444444443
No 11
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.67 E-value=4.5e-16 Score=143.39 Aligned_cols=259 Identities=23% Similarity=0.305 Sum_probs=176.9
Q ss_pred hCCCccEEEecCCCCCCHHHHHHH---HHhCCCccEEEecCCCC--CCHHH---H---HHHHhcCCCCCEEEcccCCCCC
Q 006538 311 KCASMESICLGGFCRVTDTGFKTI---LHSCSNLYKLRVSHGTQ--LTDLV---F---HDISATSLSLTHVCLRWCNLLT 379 (641)
Q Consensus 311 ~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~--l~~~~---~---~~~~~~~~~L~~L~l~~~~~l~ 379 (641)
....++.|+++| +.+.......+ +.+.++|+.-++++... +.+.. + ......+|+|+.|+||. +.+.
T Consensus 28 ~~~s~~~l~lsg-nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD-NA~G 105 (382)
T KOG1909|consen 28 PMDSLTKLDLSG-NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD-NAFG 105 (382)
T ss_pred ccCceEEEeccC-CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc-cccC
Confidence 356677777777 45555444433 33345555555554221 11111 1 11222566888888887 5665
Q ss_pred HHHHHHh----hcCCCCCEEecCCCCCCChhhhHhh-------------hCCCCCcEEEccCCcCChHHHHHHHH--hcC
Q 006538 380 NHAIKSL----ASNTGIKVLDLRDCKNLGDEALRAI-------------SSLPQLKILLLDGSDISDVGVSYLRL--TVI 440 (641)
Q Consensus 380 ~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~l-------------~~~~~L~~L~l~~~~l~~~~~~~l~~--~~~ 440 (641)
..++..+ ..+..|++|.+.+| .++..+-..+ +.-++|+.+....|++.+.+...++. ...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 5555443 37888888888888 7766554442 24689999999999888776544433 156
Q ss_pred CCccEEecCCCCCCCHHHHHHHhcc-CCCCCccEEecCCCCCCCHHHHHHHHh---cCCCCCEEeccCCCCCCHHHHHHH
Q 006538 441 TSLVKLSLRGCKRLTDKCISALFDG-TSKLQLQELDLSNLPHLSDNGILTLAT---CRVPISELRVRQCPLIGDTSVIAL 516 (641)
Q Consensus 441 ~~L~~L~l~~c~~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l 516 (641)
+.|+.+.++.+ .|.+.++..++.+ ..+++|+.|||.. |.++..+-.++++ .++.|++|++++| .+.+.|..++
T Consensus 185 ~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~ 261 (382)
T KOG1909|consen 185 PTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAIAF 261 (382)
T ss_pred cccceEEEecc-cccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchheeeccccc-ccccccHHHH
Confidence 89999999884 4777776555443 1229999999999 7888666666555 4568999999999 7999998888
Q ss_pred HhccccCcccCCCCccEEeccCCCCCCHHHHHHhhC--CCCCCceEEEecCCC---CHHHHHHHHhhCC
Q 006538 517 ASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK--PYFPRLRWLGVTGSV---NRDILDALARSRP 580 (641)
Q Consensus 517 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~l~~--~~~~~L~~L~l~~~~---~~~~~~~~~~~~~ 580 (641)
..++.. ..|+|+.|.+.+|. ++..+...+.. +..|.|+.|++++|. ..+.+..+...++
T Consensus 262 ~~al~~----~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~~ 325 (382)
T KOG1909|consen 262 VDALKE----SAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKFD 325 (382)
T ss_pred HHHHhc----cCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHHHhcc
Confidence 877665 67999999999997 88877555543 347899999999994 4667777776665
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.66 E-value=1.5e-17 Score=171.12 Aligned_cols=128 Identities=22% Similarity=0.246 Sum_probs=71.9
Q ss_pred CCCCcEEEccCCcCChHHHHHHHHhcCCCccEEecCCC--CCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHH
Q 006538 414 LPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC--KRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLA 491 (641)
Q Consensus 414 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L~l~~c--~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 491 (641)
++.|+.|.+.+|.+++..+..+.. +++|+.|+|+++ ..+.+..+..+ ..|++|+|++ |+++.-. ..++
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~--~~hLKVLhLsyNrL~~fpas~~~kl------e~LeeL~LSG-NkL~~Lp-~tva 427 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVN--FKHLKVLHLSYNRLNSFPASKLRKL------EELEELNLSG-NKLTTLP-DTVA 427 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhcc--ccceeeeeecccccccCCHHHHhch------HHhHHHhccc-chhhhhh-HHHH
Confidence 345566666666666666666555 667777777664 22334455555 6677777776 5555222 1111
Q ss_pred hcCCCCCEEeccCCCCCCHHHHHHHHhccccCcccCCCCccEEeccCCCCCCHHHHHHhhCCCCCCceEEEecCCC
Q 006538 492 TCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 567 (641)
Q Consensus 492 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 567 (641)
.|..|+.|...+| .+.... .++ .++.|+.+||+.+. ++...+..... -|+|++|+++||.
T Consensus 428 -~~~~L~tL~ahsN-~l~~fP--e~~---------~l~qL~~lDlS~N~-L~~~~l~~~~p--~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 428 -NLGRLHTLRAHSN-QLLSFP--ELA---------QLPQLKVLDLSCNN-LSEVTLPEALP--SPNLKYLDLSGNT 487 (1081)
T ss_pred -hhhhhHHHhhcCC-ceeech--hhh---------hcCcceEEecccch-hhhhhhhhhCC--CcccceeeccCCc
Confidence 4566666666666 333222 333 45667777776554 55555544433 2667777777764
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.64 E-value=4.8e-18 Score=167.05 Aligned_cols=370 Identities=20% Similarity=0.180 Sum_probs=240.5
Q ss_pred HhcccccccccCCCCChhhhhccCCCCCCceEEEeecCCCChHHHHhhhccccceecccCCCCccHHHHHHHHhcCCCCc
Q 006538 48 ILSFLTSFHLLDIALSTEIIKPLLPPNPYLRSLKVDCGKLDDSAIELMLRPTLHELCLHNCADFSGKLLSEIGGKCKDLR 127 (641)
Q Consensus 48 ~~~~l~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~ 127 (641)
..++++-++|+++.|+...++.-...+..++-|.|+..++....-..-...+|++|.+.++...+ ....+ ..+|.|+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~--vhGEL-s~Lp~LR 81 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLIS--VHGEL-SDLPRLR 81 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHh--hhhhh-ccchhhH
Confidence 36778889999999987777777778899999999877776544333334789999999886322 12233 4678888
Q ss_pred eEeccccccccCcccchhhHHHHHhcCCccceeecccccccccchhhHHHHhhhcCCCCeEeccccChHhHhhhcCCCCC
Q 006538 128 SLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVE 207 (641)
Q Consensus 128 ~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 207 (641)
.+.+..+ .+...+++.-+.++..|+.|+|+.+....-+.+++.-.....-+|.+-.|..+|..-+..
T Consensus 82 sv~~R~N------~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfin------- 148 (1255)
T KOG0444|consen 82 SVIVRDN------NLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFIN------- 148 (1255)
T ss_pred HHhhhcc------ccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHh-------
Confidence 8888653 334455556667788999999987554444445544422222333333333444433322
Q ss_pred CCCCCCCcCCCCCCCccEEEeeccCCCHHHHHHHHhcCCCCcEEecCCCCCCCCccccccchHHHHhhhcCCCCcEEEec
Q 006538 208 PHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLI 287 (641)
Q Consensus 208 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~ 287 (641)
+..|-.|+|+.|.+.. ++.-.+.+..|++|.|++|+ +....++.+.....|+.|.++
T Consensus 149 ------------LtDLLfLDLS~NrLe~--LPPQ~RRL~~LqtL~Ls~NP---------L~hfQLrQLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 149 ------------LTDLLFLDLSNNRLEM--LPPQIRRLSMLQTLKLSNNP---------LNHFQLRQLPSMTSLSVLHMS 205 (1255)
T ss_pred ------------hHhHhhhccccchhhh--cCHHHHHHhhhhhhhcCCCh---------hhHHHHhcCccchhhhhhhcc
Confidence 4667788888887643 33223567789999999984 222334444455566666665
Q ss_pred cccccccccccccChhHHHHHHHhCCCccEEEecCCCCCCHHHHHHHHHhCCCccEEEecCCCCCCHHHHHHHHhcCCCC
Q 006538 288 RSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSL 367 (641)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 367 (641)
+. .-+...+..-...+.+|..++++. +.++.. ..-+.++++|+.|+|+++ .++..... ...+.+|
T Consensus 206 ~T---------qRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~v--Pecly~l~~LrrLNLS~N-~iteL~~~--~~~W~~l 270 (1255)
T KOG0444|consen 206 NT---------QRTLDNIPTSLDDLHNLRDVDLSE-NNLPIV--PECLYKLRNLRRLNLSGN-KITELNMT--EGEWENL 270 (1255)
T ss_pred cc---------cchhhcCCCchhhhhhhhhccccc-cCCCcc--hHHHhhhhhhheeccCcC-ceeeeecc--HHHHhhh
Confidence 32 222222333334467888999988 455533 233456889999999984 44443322 1223588
Q ss_pred CEEEcccCCCCCHHHHHHhhcCCCCCEEecCCCCCCChhhh-HhhhCCCCCcEEEccCCcCChHHHHHHHHhcCCCccEE
Q 006538 368 THVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEAL-RAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKL 446 (641)
Q Consensus 368 ~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L 446 (641)
++|+++. ++++..+. .+..+++|+.|.+.+| +++-.++ ..++++.+|+.+...+|.+. .....++. |+.|+.|
T Consensus 271 EtLNlSr-NQLt~LP~-avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcR--C~kL~kL 344 (1255)
T KOG0444|consen 271 ETLNLSR-NQLTVLPD-AVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCR--CVKLQKL 344 (1255)
T ss_pred hhhcccc-chhccchH-HHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhccccc-cCchhhhh--hHHHHHh
Confidence 9999988 56654432 4568889999988877 5655544 56778888999888888653 22344555 8899999
Q ss_pred ecCCCCCCC-HHHHHHHhccCCCCCccEEecCCCCCCC
Q 006538 447 SLRGCKRLT-DKCISALFDGTSKLQLQELDLSNLPHLS 483 (641)
Q Consensus 447 ~l~~c~~l~-~~~~~~l~~~~~~~~L~~L~l~~~~~l~ 483 (641)
.|+.+.-+| ++++..+ +.|+.||+..++++-
T Consensus 345 ~L~~NrLiTLPeaIHlL------~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 345 KLDHNRLITLPEAIHLL------PDLKVLDLRENPNLV 376 (1255)
T ss_pred cccccceeechhhhhhc------CCcceeeccCCcCcc
Confidence 998766666 7777776 889999998876664
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.60 E-value=9.3e-15 Score=167.85 Aligned_cols=147 Identities=14% Similarity=0.130 Sum_probs=72.5
Q ss_pred cCCCCeEeccccChHhHhhhcCCCCCCCCCCCCcCCCCCCCccEEEeeccCCCHHHHHHHHhcCCCCcEEecCCCCCCCC
Q 006538 182 SEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEP 261 (641)
Q Consensus 182 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 261 (641)
+.+|+.|.+..++...++.. + ...+|++|++..+.+.. +..-...+++|+.|+++++..+.
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~---------------f-~~~~L~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~- 648 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSN---------------F-RPENLVKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSKNLK- 648 (1153)
T ss_pred CcccEEEEecCCCCCCCCCc---------------C-CccCCcEEECcCccccc--cccccccCCCCCEEECCCCCCcC-
Confidence 46677777766543322222 1 14567777776655432 11112356677777777653221
Q ss_pred ccccccchHHHHhhhcCCCCcEEEeccccccccccccccChhHHHHHHHhCCCccEEEecCCCCCCHHHHHHHHHhCCCc
Q 006538 262 RITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNL 341 (641)
Q Consensus 262 ~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 341 (641)
.++.++.+++|+.|++++| ..+.. +......+++|+.|++++|..+..... . .++++|
T Consensus 649 ---------~ip~ls~l~~Le~L~L~~c--------~~L~~--lp~si~~L~~L~~L~L~~c~~L~~Lp~-~--i~l~sL 706 (1153)
T PLN03210 649 ---------EIPDLSMATNLETLKLSDC--------SSLVE--LPSSIQYLNKLEDLDMSRCENLEILPT-G--INLKSL 706 (1153)
T ss_pred ---------cCCccccCCcccEEEecCC--------CCccc--cchhhhccCCCCEEeCCCCCCcCccCC-c--CCCCCC
Confidence 1112445567777777432 22211 112223466677777776655443211 1 145667
Q ss_pred cEEEecCCCCCCHHHHHHHHhcCCCCCEEEccc
Q 006538 342 YKLRVSHGTQLTDLVFHDISATSLSLTHVCLRW 374 (641)
Q Consensus 342 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 374 (641)
+.|++++|..+... .....+|+.|++++
T Consensus 707 ~~L~Lsgc~~L~~~-----p~~~~nL~~L~L~~ 734 (1153)
T PLN03210 707 YRLNLSGCSRLKSF-----PDISTNISWLDLDE 734 (1153)
T ss_pred CEEeCCCCCCcccc-----ccccCCcCeeecCC
Confidence 77777666543221 11234566666655
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.58 E-value=1.8e-14 Score=165.55 Aligned_cols=346 Identities=18% Similarity=0.155 Sum_probs=199.2
Q ss_pred HhcCCCCceEeccccccccCcccchhhHHHHHhcC-CccceeecccccccccchhhHHHHhhhcCCCCeEeccccChHhH
Q 006538 120 GGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGC-PQLEALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMV 198 (641)
Q Consensus 120 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 198 (641)
+..|++|+.|.+..........+.. .++.-+... ++|+.|.+..+....-+.. ..+.+|+.|++.+..-..+
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~-~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~------f~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRW-HLPEGFDYLPPKLRLLRWDKYPLRCMPSN------FRPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred HhcCccccEEEEeccccccccccee-ecCcchhhcCcccEEEEecCCCCCCCCCc------CCccCCcEEECcCcccccc
Confidence 4678889988885321000000000 001111222 4578887764321111111 1247888888876422111
Q ss_pred hhhcCCCCCCCCCCCCcCCCCCCCccEEEeeccC-CCHHHHHHHHhcCCCCcEEecCCCCCCCCccccccchHHHHhhhc
Q 006538 199 TELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDY-ITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQ 277 (641)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~ 277 (641)
..- ...+++|+.|+|+.+. +.. +.. ...+++|++|++.+|..+... ...+..
T Consensus 627 ~~~---------------~~~l~~Lk~L~Ls~~~~l~~--ip~-ls~l~~Le~L~L~~c~~L~~l---------p~si~~ 679 (1153)
T PLN03210 627 WDG---------------VHSLTGLRNIDLRGSKNLKE--IPD-LSMATNLETLKLSDCSSLVEL---------PSSIQY 679 (1153)
T ss_pred ccc---------------cccCCCCCEEECCCCCCcCc--CCc-cccCCcccEEEecCCCCcccc---------chhhhc
Confidence 111 2347889999998543 221 112 245789999999998543211 123567
Q ss_pred CCCCcEEEeccccccccccccccChhHHHHHHHhCCCccEEEecCCCCCCHHHHHHHHHhCCCccEEEecCCCCCCHHHH
Q 006538 278 HGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVF 357 (641)
Q Consensus 278 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~ 357 (641)
+++|+.|+++. |..+...... ..+++|+.|++++|..+... ....++|+.|+++++. +...+.
T Consensus 680 L~~L~~L~L~~--------c~~L~~Lp~~---i~l~sL~~L~Lsgc~~L~~~-----p~~~~nL~~L~L~~n~-i~~lP~ 742 (1153)
T PLN03210 680 LNKLEDLDMSR--------CENLEILPTG---INLKSLYRLNLSGCSRLKSF-----PDISTNISWLDLDETA-IEEFPS 742 (1153)
T ss_pred cCCCCEEeCCC--------CCCcCccCCc---CCCCCCCEEeCCCCCCcccc-----ccccCCcCeeecCCCc-cccccc
Confidence 78999999964 3333322111 14788999999998654432 1224688999998753 322111
Q ss_pred HHHHhcCCCCCEEEcccCCCCC------HHHHHHhhcCCCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCc-CChH
Q 006538 358 HDISATSLSLTHVCLRWCNLLT------NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSD-ISDV 430 (641)
Q Consensus 358 ~~~~~~~~~L~~L~l~~~~~l~------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~~ 430 (641)
. ..+++|+.|.+.++.... .........+++|+.|++++|..+... ...+.++++|+.|++++|. +..
T Consensus 743 ~---~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l-P~si~~L~~L~~L~Ls~C~~L~~- 817 (1153)
T PLN03210 743 N---LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL-PSSIQNLHKLEHLEIENCINLET- 817 (1153)
T ss_pred c---ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcccc-ChhhhCCCCCCEEECCCCCCcCe-
Confidence 1 135678888776642110 000001124578999999988544433 3457788999999998873 332
Q ss_pred HHHHHHHhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCH
Q 006538 431 GVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGD 510 (641)
Q Consensus 431 ~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 510 (641)
+.... .+++|+.|++++|..+.. +.... ++|+.|++++ +.++... .-...+++|+.|++++|+.++.
T Consensus 818 -LP~~~--~L~sL~~L~Ls~c~~L~~-----~p~~~--~nL~~L~Ls~-n~i~~iP--~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 818 -LPTGI--NLESLESLDLSGCSRLRT-----FPDIS--TNISDLNLSR-TGIEEVP--WWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred -eCCCC--CccccCEEECCCCCcccc-----ccccc--cccCEeECCC-CCCccCh--HHHhcCCCCCEEECCCCCCcCc
Confidence 11111 278899999999886642 11112 6899999988 5665221 1123688999999999887765
Q ss_pred HHHHHHHhccccCcccCCCCccEEeccCCCCCCH
Q 006538 511 TSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ 544 (641)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~ 544 (641)
.... .. .+++|+.+++++|.+++.
T Consensus 885 l~~~--~~--------~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 885 VSLN--IS--------KLKHLETVDFSDCGALTE 908 (1153)
T ss_pred cCcc--cc--------cccCCCeeecCCCccccc
Confidence 3321 11 668888999999987764
No 16
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.56 E-value=7.9e-14 Score=128.74 Aligned_cols=234 Identities=23% Similarity=0.239 Sum_probs=167.7
Q ss_pred HHHHHHhCCCccEEEecCCCCCCHHHHHHHHh---cCCCCCEEEcccC--CCCCHHHHH-------HhhcCCCCCEEecC
Q 006538 331 FKTILHSCSNLYKLRVSHGTQLTDLVFHDISA---TSLSLTHVCLRWC--NLLTNHAIK-------SLASNTGIKVLDLR 398 (641)
Q Consensus 331 ~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~L~~L~l~~~--~~l~~~~~~-------~l~~~~~L~~L~l~ 398 (641)
+.........++.++++++ .+.......+.. ..++|+..+++.. ..+.+.... .+..+|+|++|++|
T Consensus 22 v~~~~~~~~s~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred HHHHhcccCceEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 4444556789999999995 445554444443 4567777777652 222222222 23378899999999
Q ss_pred CCCCCChhhhHhh----hCCCCCcEEEccCCcCChHHHHHHHH-----------hcCCCccEEecCCCCCCCHHHHHHHh
Q 006538 399 DCKNLGDEALRAI----SSLPQLKILLLDGSDISDVGVSYLRL-----------TVITSLVKLSLRGCKRLTDKCISALF 463 (641)
Q Consensus 399 ~~~~~~~~~~~~l----~~~~~L~~L~l~~~~l~~~~~~~l~~-----------~~~~~L~~L~l~~c~~l~~~~~~~l~ 463 (641)
+| .++..++..+ .++.+|++|.|.+|.+...+-..+.. ..-+.|+.+..+++ ++.+.+...++
T Consensus 101 DN-A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A 178 (382)
T KOG1909|consen 101 DN-AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALA 178 (382)
T ss_pred cc-ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHH
Confidence 98 8888777665 47899999999999988766544322 13468999998874 46655554444
Q ss_pred cc-CCCCCccEEecCCCCCCCHHHHHHH---HhcCCCCCEEeccCCCCCCHHHHHHHHhccccCcccCCCCccEEeccCC
Q 006538 464 DG-TSKLQLQELDLSNLPHLSDNGILTL---ATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 539 (641)
Q Consensus 464 ~~-~~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 539 (641)
.. -..+.|+.+.++. +.|.+.++..+ +.+||+|+.|++.+| .++..+-..++..+. .++.|+.|.+++|
T Consensus 179 ~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~-----s~~~L~El~l~dc 251 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALS-----SWPHLRELNLGDC 251 (382)
T ss_pred HHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhc-----ccchheeeccccc
Confidence 33 1118999999999 78887776443 348899999999999 589899888888776 7899999999999
Q ss_pred CCCCHHHHHHhhC---CCCCCceEEEecCC-CCHHHHHHH
Q 006538 540 GGITQLAFRWLKK---PYFPRLRWLGVTGS-VNRDILDAL 575 (641)
Q Consensus 540 ~~~~~~~~~~l~~---~~~~~L~~L~l~~~-~~~~~~~~~ 575 (641)
. +.+.+..++.. ...|+|++|.+.+| .+.+....+
T Consensus 252 l-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~l 290 (382)
T KOG1909|consen 252 L-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALAL 290 (382)
T ss_pred c-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHH
Confidence 7 77766555543 24899999999999 444444443
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.55 E-value=6.7e-17 Score=159.13 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=34.3
Q ss_pred cccceecccCCCCccHHHHHHHHhcCCCCceEeccccccccCcccchhhHHHHHhcCCccceeeccc
Q 006538 98 PTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMF 164 (641)
Q Consensus 98 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 164 (641)
|-++-++++++. ++...+..-++.+.+++-|.|... ....++.-+.++.+|++|.+.+
T Consensus 7 pFVrGvDfsgND-Fsg~~FP~~v~qMt~~~WLkLnrt--------~L~~vPeEL~~lqkLEHLs~~H 64 (1255)
T KOG0444|consen 7 PFVRGVDFSGND-FSGDRFPHDVEQMTQMTWLKLNRT--------KLEQVPEELSRLQKLEHLSMAH 64 (1255)
T ss_pred ceeecccccCCc-CCCCcCchhHHHhhheeEEEechh--------hhhhChHHHHHHhhhhhhhhhh
Confidence 344556666665 554445555567777888887532 2223344466677777777764
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.52 E-value=5.8e-16 Score=159.66 Aligned_cols=129 Identities=21% Similarity=0.267 Sum_probs=88.8
Q ss_pred CCCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCcCChHHHHHHHHhcCCCccEEecCCCCCCC--HHHHHHHhccC
Q 006538 389 NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT--DKCISALFDGT 466 (641)
Q Consensus 389 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~--~~~~~~l~~~~ 466 (641)
.+.|+.|.+.+| .+++..+..+.++++|+.|+|++|.+....-..+.+ ++.|++|+|+|+ +++ ++.+..+
T Consensus 358 ~~~Lq~LylanN-~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k--le~LeeL~LSGN-kL~~Lp~tva~~---- 429 (1081)
T KOG0618|consen 358 HAALQELYLANN-HLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK--LEELEELNLSGN-KLTTLPDTVANL---- 429 (1081)
T ss_pred hHHHHHHHHhcC-cccccchhhhccccceeeeeecccccccCCHHHHhc--hHHhHHHhcccc-hhhhhhHHHHhh----
Confidence 345666677776 788888888888888999999888766555455554 788888888884 455 3333333
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhccccCcccCCCCccEEeccCCCC
Q 006538 467 SKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGG 541 (641)
Q Consensus 467 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 541 (641)
+.|++|...+ |.+.-.. .++ .++.|+.++++.| +++...+.... ..|+|++||++|+..
T Consensus 430 --~~L~tL~ahs-N~l~~fP--e~~-~l~qL~~lDlS~N-~L~~~~l~~~~---------p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 430 --GRLHTLRAHS-NQLLSFP--ELA-QLPQLKVLDLSCN-NLSEVTLPEAL---------PSPNLKYLDLSGNTR 488 (1081)
T ss_pred --hhhHHHhhcC-Cceeech--hhh-hcCcceEEecccc-hhhhhhhhhhC---------CCcccceeeccCCcc
Confidence 7788888876 4554211 222 5688888888888 57766666544 337888888888874
No 19
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.48 E-value=2.9e-13 Score=143.58 Aligned_cols=139 Identities=28% Similarity=0.366 Sum_probs=72.4
Q ss_pred CCCccEEEeec-cCCCHHHHHHHHhcCCCCcEEecCCCCCCCCccccccchH---HHHhhhcCCCCcEEEeccccccccc
Q 006538 220 LPGIQKLCLSV-DYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNS---GLQQINQHGKLKHLSLIRSQEFLIT 295 (641)
Q Consensus 220 ~~~L~~L~L~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~l~~l~~~~~L~~L~l~~~~~~~~~ 295 (641)
++.|+.|.+.. ..+.+..+..+...+++|++|+++++. ...+.. .......+++|+.|+++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~~~~~~L~~l~l~-------- 251 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCC-------LLITLSPLLLLLLLSICRKLKSLDLS-------- 251 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcc-------cccccchhHhhhhhhhcCCcCccchh--------
Confidence 34444444442 334444455555567777777776521 011111 11112244556666663
Q ss_pred cccccChhHHHHHHHhCCCccEEEecCCCCCCHHHHHHHHHhCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEcc
Q 006538 296 YFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLR 373 (641)
Q Consensus 296 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 373 (641)
++..+++.++..+...|++|++|.+.+|..+++.++..+...|++|++|++++|..+++.++..+...|++|+.|.+.
T Consensus 252 ~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 252 GCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred hhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 233355566665555566666666555555566666666666666666666666555555555555555555554443
No 20
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.43 E-value=6.4e-13 Score=140.99 Aligned_cols=242 Identities=29% Similarity=0.415 Sum_probs=107.6
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHHhCCCccEEEecC-CCCCCHHH--HHHHHhcCCCCCEEEcccCCCCCHHHHHHhh-
Q 006538 312 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSH-GTQLTDLV--FHDISATSLSLTHVCLRWCNLLTNHAIKSLA- 387 (641)
Q Consensus 312 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~~l~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~- 387 (641)
+++|+.|.+.+|..+.+.++..+...++.|+.|++++ +......+ ...+...+++|+.|++++|..+++.++..++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4444444444444444443344444444444444443 11111111 1123333444444444444444444444444
Q ss_pred cCCCCCEEecCCCCCCChhhhHhhh-CCCCCcEEEccCC-cCChHHHHHHHHhcCCCccEEecCC---CCCCCHHHHHHH
Q 006538 388 SNTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRG---CKRLTDKCISAL 462 (641)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~~L~~L~l~~---c~~l~~~~~~~l 462 (641)
.|++|+.|.+.+|..+++.++..++ ++++|++|++++| .+++.++..+.. .+++|+.|.+.. |..+++.++..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~-~c~~l~~l~~~~~~~c~~l~~~~l~~~ 345 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK-NCPNLRELKLLSLNGCPSLTDLSLSGL 345 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH-hCcchhhhhhhhcCCCccHHHHHHHHh
Confidence 2444555544444334444444443 3444555555544 333444444444 344444433322 223444444433
Q ss_pred hccCCCC-CccEEecCCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhccccCcccCCCCccEEeccCCCC
Q 006538 463 FDGTSKL-QLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGG 541 (641)
Q Consensus 463 ~~~~~~~-~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 541 (641)
.... . .+..+.+.+|..+++..+.... .......+.+.+|+.++ .++..... .+..++.|++..|..
T Consensus 346 ~~~~--~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~~--------~~~~l~~L~l~~~~~ 413 (482)
T KOG1947|consen 346 LTLT--SDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRLC--------RSDSLRVLNLSDCRL 413 (482)
T ss_pred hccC--chhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHhc--------cCCccceEecccCcc
Confidence 3222 1 3444444444444444443322 11111134455555555 44444443 334466777777766
Q ss_pred CCHHHHHHhhCCCCCCceEEEecCCC
Q 006538 542 ITQLAFRWLKKPYFPRLRWLGVTGSV 567 (641)
Q Consensus 542 ~~~~~~~~l~~~~~~~L~~L~l~~~~ 567 (641)
++...+..... .+.+++.+++.+|.
T Consensus 414 ~t~~~l~~~~~-~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 414 VTDKGLRCLAD-SCSNLKDLDLSGCR 438 (482)
T ss_pred ccccchHHHhh-hhhccccCCccCcc
Confidence 66666555533 25566666666663
No 21
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.21 E-value=1.2e-10 Score=104.03 Aligned_cols=167 Identities=19% Similarity=0.208 Sum_probs=89.0
Q ss_pred cCCCCCEEecCCCCCCChhhhHh----hhCCCCCcEEEccCCcCChHHHHHHH-------H----hcCCCccEEecCCCC
Q 006538 388 SNTGIKVLDLRDCKNLGDEALRA----ISSLPQLKILLLDGSDISDVGVSYLR-------L----TVITSLVKLSLRGCK 452 (641)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~l~~~~~~~l~-------~----~~~~~L~~L~l~~c~ 452 (641)
.||+|+.++++.| .++...+.. +++-..|.+|.+++|.+...+-..+. . ..-|.|+......+.
T Consensus 90 kcp~l~~v~LSDN-Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 90 KCPRLQKVDLSDN-AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred cCCcceeeecccc-ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 5555555555554 343332222 23445555555555544332211111 1 023556666655532
Q ss_pred CCCHHHH---HHHhccCCCCCccEEecCCCCCCCHHHHHHHH----hcCCCCCEEeccCCCCCCHHHHHHHHhccccCcc
Q 006538 453 RLTDKCI---SALFDGTSKLQLQELDLSNLPHLSDNGILTLA----TCRVPISELRVRQCPLIGDTSVIALASMLVDDDR 525 (641)
Q Consensus 453 ~l~~~~~---~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~----~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~ 525 (641)
+-..+. ....+.. .+|+++.+.. |.|.+.|+..++ ..+.+|+.|+|..| .+|..|...++.++.
T Consensus 169 -lengs~~~~a~~l~sh--~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~---- 239 (388)
T COG5238 169 -LENGSKELSAALLESH--ENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALC---- 239 (388)
T ss_pred -hccCcHHHHHHHHHhh--cCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhc----
Confidence 322111 1112222 5777777777 677766555432 25677777777777 477677666666554
Q ss_pred cCCCCccEEeccCCCCCCHHHHHHhhC----CCCCCceEEEecCC
Q 006538 526 WYGSSIRLLDLYNCGGITQLAFRWLKK----PYFPRLRWLGVTGS 566 (641)
Q Consensus 526 ~~~~~L~~L~l~~c~~~~~~~~~~l~~----~~~~~L~~L~l~~~ 566 (641)
..+.|+.|.+.+|- ++..+...+.. ...|+|..|...+|
T Consensus 240 -~W~~lrEL~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 240 -EWNLLRELRLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred -ccchhhhccccchh-hccccHHHHHHHhhhhcCCCccccccchh
Confidence 56667777777775 55554433332 34677777777666
No 22
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.20 E-value=1.7e-10 Score=103.03 Aligned_cols=246 Identities=17% Similarity=0.178 Sum_probs=151.6
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHHhCC---CccEEEecCCC--CCCHHH---HH---HHHhcCCCCCEEEcccCCCCCH
Q 006538 312 CASMESICLGGFCRVTDTGFKTILHSCS---NLYKLRVSHGT--QLTDLV---FH---DISATSLSLTHVCLRWCNLLTN 380 (641)
Q Consensus 312 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~---~L~~L~l~~~~--~l~~~~---~~---~~~~~~~~L~~L~l~~~~~l~~ 380 (641)
+..++.++|+| +.+.......+..... +|+..+++... ...+.. +. ...-.||+|+..+|+. +.+..
T Consensus 29 ~d~~~evdLSG-NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD-NAfg~ 106 (388)
T COG5238 29 MDELVEVDLSG-NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD-NAFGS 106 (388)
T ss_pred hcceeEEeccC-CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc-cccCc
Confidence 56677777777 4666655555544443 44444444321 111111 11 1223678888888876 34432
Q ss_pred HH----HHHhhcCCCCCEEecCCCCCCChhhhHhh-------------hCCCCCcEEEccCCcCChHHH---HHHHHhcC
Q 006538 381 HA----IKSLASNTGIKVLDLRDCKNLGDEALRAI-------------SSLPQLKILLLDGSDISDVGV---SYLRLTVI 440 (641)
Q Consensus 381 ~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~l-------------~~~~~L~~L~l~~~~l~~~~~---~~l~~~~~ 440 (641)
.. ...++..+.|++|.+++| .+...+-..+ +.-|.|+.+.+..|++..... ....+ .-
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~-sh 184 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLE-SH 184 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHH-hh
Confidence 22 223457788888888887 6665432222 246899999999886655433 33333 22
Q ss_pred CCccEEecCCCCCCCHHHHHHHhcc--CCCCCccEEecCCCCCCCHHHHHHHHh---cCCCCCEEeccCCCCCCHHHHHH
Q 006538 441 TSLVKLSLRGCKRLTDKCISALFDG--TSKLQLQELDLSNLPHLSDNGILTLAT---CRVPISELRVRQCPLIGDTSVIA 515 (641)
Q Consensus 441 ~~L~~L~l~~c~~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~ 515 (641)
.+|+.+.+.. +.|.++++..++.. ..+++|+.||+.. |.++-.+-..++. ..+.|++|.+..| .++..|...
T Consensus 185 ~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~al~~W~~lrEL~lnDC-lls~~G~~~ 261 (388)
T COG5238 185 ENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLADALCEWNLLRELRLNDC-LLSNEGVKS 261 (388)
T ss_pred cCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHHHhcccchhhhccccch-hhccccHHH
Confidence 5899999988 45888877665422 2228999999998 6787555554443 3367899999999 687777655
Q ss_pred HHhccccCcccCCCCccEEeccCCCC----CCHHHHHHhhCCCCCCceEEEecCCC
Q 006538 516 LASMLVDDDRWYGSSIRLLDLYNCGG----ITQLAFRWLKKPYFPRLRWLGVTGSV 567 (641)
Q Consensus 516 l~~~~~~~~~~~~~~L~~L~l~~c~~----~~~~~~~~l~~~~~~~L~~L~l~~~~ 567 (641)
+....... ..|+|+.|-..++.. +-+..+..+.....|-|..|.+.||.
T Consensus 262 v~~~f~e~---~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 262 VLRRFNEK---FVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred HHHHhhhh---cCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 44322111 568899888887653 22233555555567888888888774
No 23
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.18 E-value=4.4e-13 Score=125.80 Aligned_cols=60 Identities=25% Similarity=0.191 Sum_probs=35.0
Q ss_pred CCCCCCccEEEeeccCCCHHHHHHHHhcCCCCcEEecCCCCCCCCccccccchHHHHhhhcCCCCcEEEec
Q 006538 217 PSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLI 287 (641)
Q Consensus 217 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~ 287 (641)
+++|..|++|.++.|.+..-.. ...+.++++..|++++|.. ..+.+ .+.-+++|.+|++|
T Consensus 224 f~gcs~L~Elh~g~N~i~~lpa-e~~~~L~~l~vLDLRdNkl------ke~Pd----e~clLrsL~rLDlS 283 (565)
T KOG0472|consen 224 FPGCSLLKELHVGENQIEMLPA-EHLKHLNSLLVLDLRDNKL------KEVPD----EICLLRSLERLDLS 283 (565)
T ss_pred CCccHHHHHHHhcccHHHhhHH-HHhcccccceeeecccccc------ccCch----HHHHhhhhhhhccc
Confidence 4557777777777666543222 2335677888888887632 11222 22335667777775
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.9e-11 Score=116.39 Aligned_cols=211 Identities=21% Similarity=0.205 Sum_probs=101.9
Q ss_pred hCCCccEEEecCCCCCCHHHHHHHHHhCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEcccCCCCCHHHHHHhhcCC
Q 006538 311 KCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT 390 (641)
Q Consensus 311 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 390 (641)
.+.+|+.+.|.+| .+...+.....+.|++++.|+++++-...-..+..++..+|+|+.|+++. +.+...
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-Nrl~~~--------- 187 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-NRLSNF--------- 187 (505)
T ss_pred hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc-ccccCC---------
Confidence 3556666677663 55544443455667777777777642223334445555556666666654 222110
Q ss_pred CCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCcCChHHHHHHHHhcCCCccEEecCCCCCCC--HHHHHHHhccCCC
Q 006538 391 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT--DKCISALFDGTSK 468 (641)
Q Consensus 391 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~--~~~~~~l~~~~~~ 468 (641)
.+-..-..+++|+.|.++.|+++...+..+.. .+|+|+.|++.++..+. ......+
T Consensus 188 ---------------~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~-~fPsl~~L~L~~N~~~~~~~~~~~i~------ 245 (505)
T KOG3207|consen 188 ---------------ISSNTTLLLSHLKQLVLNSCGLSWKDVQWILL-TFPSLEVLYLEANEIILIKATSTKIL------ 245 (505)
T ss_pred ---------------ccccchhhhhhhheEEeccCCCCHHHHHHHHH-hCCcHHHhhhhcccccceecchhhhh------
Confidence 00000013445555666666666555555554 56666666665543222 1111112
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHH-----HhccccCcccCCCCccEEeccCCCCCC
Q 006538 469 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIAL-----ASMLVDDDRWYGSSIRLLDLYNCGGIT 543 (641)
Q Consensus 469 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l-----~~~~~~~~~~~~~~L~~L~l~~c~~~~ 543 (641)
+.|++|+|++++.++-....... .+|.|+.|+++.| .+++...... .. .+++|++|++..++-..
T Consensus 246 ~~L~~LdLs~N~li~~~~~~~~~-~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~--------~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 246 QTLQELDLSNNNLIDFDQGYKVG-TLPGLNQLNLSST-GIASIAEPDVESLDKTH--------TFPKLEYLNISENNIRD 315 (505)
T ss_pred hHHhhccccCCcccccccccccc-cccchhhhhcccc-CcchhcCCCccchhhhc--------ccccceeeecccCcccc
Confidence 55666666664444422222222 4566666666666 3443322111 11 45666666666655211
Q ss_pred HHHHHHhhCCCCCCceEEEecCC
Q 006538 544 QLAFRWLKKPYFPRLRWLGVTGS 566 (641)
Q Consensus 544 ~~~~~~l~~~~~~~L~~L~l~~~ 566 (641)
-..+..+.. .++|+.|.+.++
T Consensus 316 w~sl~~l~~--l~nlk~l~~~~n 336 (505)
T KOG3207|consen 316 WRSLNHLRT--LENLKHLRITLN 336 (505)
T ss_pred ccccchhhc--cchhhhhhcccc
Confidence 222333322 455666655554
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.9e-11 Score=115.23 Aligned_cols=133 Identities=17% Similarity=0.189 Sum_probs=86.1
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHHhCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEcccCCCCCHHHHHHhhcCCC
Q 006538 312 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTG 391 (641)
Q Consensus 312 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 391 (641)
+++|+.|.|+.| .++...+..+...+|+|+.|.+..+..+...... ......|+.|+|++.+.++.......+.+|.
T Consensus 196 l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 196 LSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCcccccccccccccccc
Confidence 567888888886 6677777777888888888888875322111111 1223478888888855554443444557888
Q ss_pred CCEEecCCCCCCChhhhHh------hhCCCCCcEEEccCCcCChH-HHHHHHHhcCCCccEEecCC
Q 006538 392 IKVLDLRDCKNLGDEALRA------ISSLPQLKILLLDGSDISDV-GVSYLRLTVITSLVKLSLRG 450 (641)
Q Consensus 392 L~~L~l~~~~~~~~~~~~~------l~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~~~L~~L~l~~ 450 (641)
|+.|+++.| ++.+..... ...+++|++|++..|++.+. .+..+.. +++|+.|.+..
T Consensus 273 L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~--l~nlk~l~~~~ 335 (505)
T KOG3207|consen 273 LNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRT--LENLKHLRITL 335 (505)
T ss_pred hhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhc--cchhhhhhccc
Confidence 888888877 555543222 23578888888888877543 3444444 67777777654
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.95 E-value=2.4e-09 Score=114.72 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=17.4
Q ss_pred CCccEEEeeccCCCHHHHHHHHhcCCCCcEEecCCC
Q 006538 221 PGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDA 256 (641)
Q Consensus 221 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 256 (641)
++|+.|.+..|.+.. +....++|++|++++|
T Consensus 222 ~~L~~L~L~~N~Lt~-----LP~lp~~Lk~LdLs~N 252 (788)
T PRK15387 222 AHITTLVIPDNNLTS-----LPALPPELRTLEVSGN 252 (788)
T ss_pred cCCCEEEccCCcCCC-----CCCCCCCCcEEEecCC
Confidence 456666666655542 1123456677777665
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.91 E-value=1.3e-09 Score=116.75 Aligned_cols=225 Identities=20% Similarity=0.188 Sum_probs=115.8
Q ss_pred CCCccEEEeeccCCCHHHHHHHHhcCCCCcEEecCCCCCCCCccccccchHHHHhhhcCCCCcEEEeccccccccccccc
Q 006538 220 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 299 (641)
Q Consensus 220 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 299 (641)
.++|++|++++|.+.. ++ ...++|+.|++++|. ++ .+.. ..++|+.|+++ .+.
T Consensus 241 p~~Lk~LdLs~N~Lts--LP---~lp~sL~~L~Ls~N~---------L~--~Lp~--lp~~L~~L~Ls---------~N~ 293 (788)
T PRK15387 241 PPELRTLEVSGNQLTS--LP---VLPPGLLELSIFSNP---------LT--HLPA--LPSGLCKLWIF---------GNQ 293 (788)
T ss_pred CCCCcEEEecCCccCc--cc---CcccccceeeccCCc---------hh--hhhh--chhhcCEEECc---------CCc
Confidence 5788999988887663 22 235688888888863 21 1111 12467777774 223
Q ss_pred cChhHHHHHHHhCCCccEEEecCCCCCCHHHHHHHHHhCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEcccCCCCC
Q 006538 300 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 379 (641)
Q Consensus 300 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~ 379 (641)
++.. ....++|+.|+++++ .+... .. ..++|+.|.+++| .++.. ....++|+.|++++ +.++
T Consensus 294 Lt~L-----P~~p~~L~~LdLS~N-~L~~L--p~---lp~~L~~L~Ls~N-~L~~L-----P~lp~~Lq~LdLS~-N~Ls 355 (788)
T PRK15387 294 LTSL-----PVLPPGLQELSVSDN-QLASL--PA---LPSELCKLWAYNN-QLTSL-----PTLPSGLQELSVSD-NQLA 355 (788)
T ss_pred cccc-----cccccccceeECCCC-ccccC--CC---CcccccccccccC-ccccc-----cccccccceEecCC-CccC
Confidence 3321 112467788888774 44421 11 1235666766664 22221 11223677777776 4444
Q ss_pred HHHHHHhhcCCCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCcCChHHHHHHHHhcCCCccEEecCCCCCCCHHHH
Q 006538 380 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 459 (641)
Q Consensus 380 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~ 459 (641)
..+. ..++|+.|++++| .++.. .. ..++|+.|++++|.++... . ..++|+.|+++++. ++.
T Consensus 356 ~LP~----lp~~L~~L~Ls~N-~L~~L--P~--l~~~L~~LdLs~N~Lt~LP-----~-l~s~L~~LdLS~N~-Lss--- 416 (788)
T PRK15387 356 SLPT----LPSELYKLWAYNN-RLTSL--PA--LPSGLKELIVSGNRLTSLP-----V-LPSELKELMVSGNR-LTS--- 416 (788)
T ss_pred CCCC----CCcccceehhhcc-ccccC--cc--cccccceEEecCCcccCCC-----C-cccCCCEEEccCCc-CCC---
Confidence 3221 2346666776665 44421 11 1246777777777655211 1 13467777777654 331
Q ss_pred HHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHH
Q 006538 460 SALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIAL 516 (641)
Q Consensus 460 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 516 (641)
+.... .+|+.|++++ |.++... ..+ ..+++|+.|++++|+ ++...+..+
T Consensus 417 --IP~l~--~~L~~L~Ls~-NqLt~LP-~sl-~~L~~L~~LdLs~N~-Ls~~~~~~L 465 (788)
T PRK15387 417 --LPMLP--SGLLSLSVYR-NQLTRLP-ESL-IHLSSETTVNLEGNP-LSERTLQAL 465 (788)
T ss_pred --CCcch--hhhhhhhhcc-CcccccC-hHH-hhccCCCeEECCCCC-CCchHHHHH
Confidence 11111 4566677766 4555211 011 145677777777773 655544444
No 28
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=1.5e-09 Score=98.41 Aligned_cols=211 Identities=17% Similarity=0.130 Sum_probs=135.3
Q ss_pred HHHHhcCCCCCEEEcccCCCCCHHHH--HHhhcCCCCCEEecCCCCCCChhhhHhh-hCCCCCcEEEccCCcCChHHHHH
Q 006538 358 HDISATSLSLTHVCLRWCNLLTNHAI--KSLASNTGIKVLDLRDCKNLGDEALRAI-SSLPQLKILLLDGSDISDVGVSY 434 (641)
Q Consensus 358 ~~~~~~~~~L~~L~l~~~~~l~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~l~~~~~~~ 434 (641)
..+...+..++.++|.+ +.+++..- ..+.++|.|+.|+++.| .+.. .+..+ ....+|+.|.|.+..++......
T Consensus 64 ~~~~~~~~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N-~L~s-~I~~lp~p~~nl~~lVLNgT~L~w~~~~s 140 (418)
T KOG2982|consen 64 MLFGSSVTDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCN-SLSS-DIKSLPLPLKNLRVLVLNGTGLSWTQSTS 140 (418)
T ss_pred HHHHHHhhhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCC-cCCC-ccccCcccccceEEEEEcCCCCChhhhhh
Confidence 33444455555555555 44443321 12336777777777765 3322 12233 35668888888888887777777
Q ss_pred HHHhcCCCccEEecCCCC----CCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCH
Q 006538 435 LRLTVITSLVKLSLRGCK----RLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGD 510 (641)
Q Consensus 435 l~~~~~~~L~~L~l~~c~----~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 510 (641)
+.. .+|.++.|+++.++ ++.++....+. +.+++|+...|.......+-.+.+-+|++..+.+..|| +.+
T Consensus 141 ~l~-~lP~vtelHmS~N~~rq~n~Dd~c~e~~s-----~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~ 213 (418)
T KOG2982|consen 141 SLD-DLPKVTELHMSDNSLRQLNLDDNCIEDWS-----TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKT 213 (418)
T ss_pred hhh-cchhhhhhhhccchhhhhccccccccccc-----hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccc
Confidence 666 67888888877642 23344444442 68889999887555555566677788999999999997 555
Q ss_pred HHHHHHHhccccCcccCCCCccEEeccCCCCCCHHHHHHhhCCCCCCceEEEecCCCCHHHHHH------HHhhCCCeEE
Q 006538 511 TSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDA------LARSRPFLNV 584 (641)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~------~~~~~~~l~~ 584 (641)
...+.-.. .+|.+..|+++.+.--+-..+.++.. +|.|+-|.+.+++..+.++. +....+++++
T Consensus 214 ~s~ek~se--------~~p~~~~LnL~~~~idswasvD~Ln~--f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~v 283 (418)
T KOG2982|consen 214 ESSEKGSE--------PFPSLSCLNLGANNIDSWASVDALNG--FPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQV 283 (418)
T ss_pred hhhcccCC--------CCCcchhhhhcccccccHHHHHHHcC--CchhheeeccCCcccccccCCcceEEEEeeccceEE
Confidence 54444333 67888889998876334456777765 99999999999974333332 2234566666
Q ss_pred ecCC
Q 006538 585 ACRG 588 (641)
Q Consensus 585 ~~~~ 588 (641)
..++
T Consensus 284 LNGs 287 (418)
T KOG2982|consen 284 LNGS 287 (418)
T ss_pred ecCc
Confidence 6555
No 29
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.83 E-value=1.4e-08 Score=108.43 Aligned_cols=215 Identities=19% Similarity=0.206 Sum_probs=150.6
Q ss_pred CCCccEEEeeccCCCHHHHHHHHhcCCCCcEEecCCCCCCCCccccc--cchH-HHHhh---hcCCCCcEEEeccccccc
Q 006538 220 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFD--LTNS-GLQQI---NQHGKLKHLSLIRSQEFL 293 (641)
Q Consensus 220 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~-~l~~l---~~~~~L~~L~l~~~~~~~ 293 (641)
.-++++.++....+....+..+.+. .|++|.+.+....+.+.... +... .+..+ ..-.+|++|++++
T Consensus 59 ~f~ltki~l~~~~~~~~~~~~l~~~--~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G----- 131 (699)
T KOG3665|consen 59 KFNLTKIDLKNVTLQHQTLEMLRKQ--DLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISG----- 131 (699)
T ss_pred hheeEEeeccceecchhHHHHHhhc--cccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccc-----
Confidence 4567777777777777777666433 38888888765544333221 1111 12222 2457999999954
Q ss_pred cccccccChhHHHHHHHhCCCccEEEecCCCCCCHHHHHHHHHhCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEcc
Q 006538 294 ITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLR 373 (641)
Q Consensus 294 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 373 (641)
...+...+...+...+|+|++|.+.+ ..+....+..++.++|+|..||++++ ++++. .-....++|+.|.+.
T Consensus 132 ---~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl---~GIS~LknLq~L~mr 203 (699)
T KOG3665|consen 132 ---SELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGT-NISNL---SGISRLKNLQVLSMR 203 (699)
T ss_pred ---cchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCC-CccCc---HHHhccccHHHHhcc
Confidence 45566677778888899999999999 56666668899999999999999995 44443 222356789999888
Q ss_pred cCCCCCHHHHHHhhcCCCCCEEecCCCCCCChhh-----hHhhhCCCCCcEEEccCCcCChHHHHHHHHhcCCCccEEec
Q 006538 374 WCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEA-----LRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSL 448 (641)
Q Consensus 374 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-----~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L~l 448 (641)
+-.--+...+..+..+++|+.||+|.-....... ++.-..+|+|+.|+.+++.++...+..+.. .-|+|+.+.+
T Consensus 204 nLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~-sH~~L~~i~~ 282 (699)
T KOG3665|consen 204 NLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN-SHPNLQQIAA 282 (699)
T ss_pred CCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH-hCccHhhhhh
Confidence 7544444666678899999999999865444331 111235899999999999999998888877 6677777665
Q ss_pred CC
Q 006538 449 RG 450 (641)
Q Consensus 449 ~~ 450 (641)
-+
T Consensus 283 ~~ 284 (699)
T KOG3665|consen 283 LD 284 (699)
T ss_pred hh
Confidence 43
No 30
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.81 E-value=1.1e-09 Score=73.18 Aligned_cols=36 Identities=25% Similarity=0.493 Sum_probs=32.3
Q ss_pred cccchHHHHHHHHhhcccchhhhHhhhcccHHHHHH
Q 006538 11 LDQLPAALLCTIITKLDVASISSVAATCSTFRACAA 46 (641)
Q Consensus 11 ~~~LP~e~l~~I~~~L~~~d~~~~~~vcr~w~~~~~ 46 (641)
|..||+|++.+||+||+..|+.+++.|||+|++++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence 578999999999999999999999999999999984
No 31
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.78 E-value=8.8e-11 Score=110.61 Aligned_cols=37 Identities=24% Similarity=0.169 Sum_probs=27.7
Q ss_pred CCCCccEEEeeccCCCHHHHHHHHhcCCCCcEEecCCCC
Q 006538 219 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAP 257 (641)
Q Consensus 219 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 257 (641)
.+++|..|+|..|.+..-..... .+++|.+|++++|.
T Consensus 250 ~L~~l~vLDLRdNklke~Pde~c--lLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNKLKEVPDEIC--LLRSLERLDLSNND 286 (565)
T ss_pred ccccceeeeccccccccCchHHH--HhhhhhhhcccCCc
Confidence 47899999999888765333322 36789999999974
No 32
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.73 E-value=4.8e-08 Score=104.40 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=20.4
Q ss_pred CCccEEEecCCCCCCHHHHHHHHHhCCCccEEEecCCC
Q 006538 313 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGT 350 (641)
Q Consensus 313 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 350 (641)
-++..+++.+ ..+....+.. ..... |++|.+++..
T Consensus 60 f~ltki~l~~-~~~~~~~~~~-l~~~~-L~sl~LGnl~ 94 (699)
T KOG3665|consen 60 FNLTKIDLKN-VTLQHQTLEM-LRKQD-LESLKLGNLD 94 (699)
T ss_pred heeEEeeccc-eecchhHHHH-Hhhcc-ccccCCcchH
Confidence 4577777777 3444443433 33333 8888887654
No 33
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.73 E-value=3.8e-08 Score=106.22 Aligned_cols=232 Identities=17% Similarity=0.181 Sum_probs=105.1
Q ss_pred CCccEEEeeccCCCHHHHHHHHhcCCCCcEEecCCCCCCCCccccccchHHHHhhhcCCCCcEEEecccccccccccccc
Q 006538 221 PGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRV 300 (641)
Q Consensus 221 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 300 (641)
++|+.|+|++|.+..- .. ..+++|++|++++|... .+.. .+ .++|+.|+++. +.+
T Consensus 199 ~~L~~L~Ls~N~LtsL--P~--~l~~nL~~L~Ls~N~Lt------sLP~-~l-----~~~L~~L~Ls~---------N~L 253 (754)
T PRK15370 199 EQITTLILDNNELKSL--PE--NLQGNIKTLYANSNQLT------SIPA-TL-----PDTIQEMELSI---------NRI 253 (754)
T ss_pred cCCcEEEecCCCCCcC--Ch--hhccCCCEEECCCCccc------cCCh-hh-----hccccEEECcC---------Ccc
Confidence 5677777777666531 11 11357778887776311 1111 11 13566666642 222
Q ss_pred ChhHHHHHHHhCCCccEEEecCCCCCCHHHHHHHHHhCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEcccCCCCCH
Q 006538 301 NDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTN 380 (641)
Q Consensus 301 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 380 (641)
...... + ..+|+.|++++ +.+... .. .-.++|+.|++++| .++..+.. ..++|+.|++++ +.++.
T Consensus 254 ~~LP~~-l---~s~L~~L~Ls~-N~L~~L--P~--~l~~sL~~L~Ls~N-~Lt~LP~~----lp~sL~~L~Ls~-N~Lt~ 318 (754)
T PRK15370 254 TELPER-L---PSALQSLDLFH-NKISCL--PE--NLPEELRYLSVYDN-SIRTLPAH----LPSGITHLNVQS-NSLTA 318 (754)
T ss_pred CcCChh-H---hCCCCEEECcC-CccCcc--cc--ccCCCCcEEECCCC-ccccCccc----chhhHHHHHhcC-Ccccc
Confidence 211100 1 23567777765 344421 11 01246777777664 33221100 112455666655 23332
Q ss_pred HHHHHhhcCCCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCcCChHHHHHHHHhcCCCccEEecCCCCCCCHHHHH
Q 006538 381 HAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCIS 460 (641)
Q Consensus 381 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~ 460 (641)
.+. ...++|+.|++++| .++... ..+ .++|+.|++++|.++.... . ..++|+.|++++|. ++...-
T Consensus 319 LP~---~l~~sL~~L~Ls~N-~Lt~LP-~~l--~~sL~~L~Ls~N~L~~LP~-~----lp~~L~~LdLs~N~-Lt~LP~- 384 (754)
T PRK15370 319 LPE---TLPPGLKTLEAGEN-ALTSLP-ASL--PPELQVLDVSKNQITVLPE-T----LPPTITTLDVSRNA-LTNLPE- 384 (754)
T ss_pred CCc---cccccceeccccCC-ccccCC-hhh--cCcccEEECCCCCCCcCCh-h----hcCCcCEEECCCCc-CCCCCH-
Confidence 211 01246666666666 343321 111 2466666666665542111 0 13466666666654 331100
Q ss_pred HHhccCCCCCccEEecCCCCCCC--HHHHHHHHhcCCCCCEEeccCCCCCCHHHH
Q 006538 461 ALFDGTSKLQLQELDLSNLPHLS--DNGILTLATCRVPISELRVRQCPLIGDTSV 513 (641)
Q Consensus 461 ~l~~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~ 513 (641)
.+. +.|+.|++++ +.+. +..+..+...++++..|++.+|+ ++...+
T Consensus 385 ~l~-----~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np-ls~~tl 432 (754)
T PRK15370 385 NLP-----AALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNP-FSERTI 432 (754)
T ss_pred hHH-----HHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCC-ccHHHH
Confidence 011 3466666666 3443 22333333345666666666664 443333
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.64 E-value=2.5e-09 Score=100.85 Aligned_cols=84 Identities=20% Similarity=0.161 Sum_probs=57.9
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhccccCcccCCCCccEEeccCCCCCCHHHHH
Q 006538 469 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFR 548 (641)
Q Consensus 469 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~ 548 (641)
++|++|++++ |.|+...-.++ .+...+++|.|.+|+ +....-..+. .+..|+.|++.++. |+.....
T Consensus 274 ~~L~~lnlsn-N~i~~i~~~aF-e~~a~l~eL~L~~N~-l~~v~~~~f~---------~ls~L~tL~L~~N~-it~~~~~ 340 (498)
T KOG4237|consen 274 PNLRKLNLSN-NKITRIEDGAF-EGAAELQELYLTRNK-LEFVSSGMFQ---------GLSGLKTLSLYDNQ-ITTVAPG 340 (498)
T ss_pred ccceEeccCC-Cccchhhhhhh-cchhhhhhhhcCcch-HHHHHHHhhh---------ccccceeeeecCCe-eEEEecc
Confidence 8899999988 67774322222 267788899888884 5433322222 67789999999887 7776666
Q ss_pred HhhCCCCCCceEEEecCCC
Q 006538 549 WLKKPYFPRLRWLGVTGSV 567 (641)
Q Consensus 549 ~l~~~~~~~L~~L~l~~~~ 567 (641)
++.. ..+|.+|++-.|+
T Consensus 341 aF~~--~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 341 AFQT--LFSLSTLNLLSNP 357 (498)
T ss_pred cccc--cceeeeeehccCc
Confidence 6655 6688888887664
No 35
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.59 E-value=1.6e-07 Score=101.53 Aligned_cols=170 Identities=14% Similarity=0.152 Sum_probs=82.3
Q ss_pred CCCEEEcccCCCCCHHHHHHhhcCCCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCcCChHHHHHHHHhcCCCccE
Q 006538 366 SLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVK 445 (641)
Q Consensus 366 ~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~ 445 (641)
+|+.|++++ +.++..+. . -.++|+.|++++| .++.... .+ .++|+.|++++|.++..... ..++|+.
T Consensus 263 ~L~~L~Ls~-N~L~~LP~-~--l~~sL~~L~Ls~N-~Lt~LP~-~l--p~sL~~L~Ls~N~Lt~LP~~-----l~~sL~~ 329 (754)
T PRK15370 263 ALQSLDLFH-NKISCLPE-N--LPEELRYLSVYDN-SIRTLPA-HL--PSGITHLNVQSNSLTALPET-----LPPGLKT 329 (754)
T ss_pred CCCEEECcC-CccCcccc-c--cCCCCcEEECCCC-ccccCcc-cc--hhhHHHHHhcCCccccCCcc-----cccccee
Confidence 566666664 34432211 1 1246677777766 4443211 11 13566667777665532110 1356777
Q ss_pred EecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhccccCcc
Q 006538 446 LSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDR 525 (641)
Q Consensus 446 L~l~~c~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~ 525 (641)
|++++|. ++... ..+ + ++|+.|++++| .++.... . -.++|+.|+|++| .++.... .+.
T Consensus 330 L~Ls~N~-Lt~LP-~~l---~--~sL~~L~Ls~N-~L~~LP~-~---lp~~L~~LdLs~N-~Lt~LP~-~l~-------- 387 (754)
T PRK15370 330 LEAGENA-LTSLP-ASL---P--PELQVLDVSKN-QITVLPE-T---LPPTITTLDVSRN-ALTNLPE-NLP-------- 387 (754)
T ss_pred ccccCCc-cccCC-hhh---c--CcccEEECCCC-CCCcCCh-h---hcCCcCEEECCCC-cCCCCCH-hHH--------
Confidence 7777654 33110 011 1 57777777773 4542110 1 1256777777777 3553221 111
Q ss_pred cCCCCccEEeccCCCCCCHH--HHHHhhCCCCCCceEEEecCCC-CHHHHHHH
Q 006538 526 WYGSSIRLLDLYNCGGITQL--AFRWLKKPYFPRLRWLGVTGSV-NRDILDAL 575 (641)
Q Consensus 526 ~~~~~L~~L~l~~c~~~~~~--~~~~l~~~~~~~L~~L~l~~~~-~~~~~~~~ 575 (641)
+.|+.|++++|. ++.. .+..+.. .+|++..|.+.+|+ ....+..+
T Consensus 388 ---~sL~~LdLs~N~-L~~LP~sl~~~~~-~~~~l~~L~L~~Npls~~tl~~L 435 (754)
T PRK15370 388 ---AALQIMQASRNN-LVRLPESLPHFRG-EGPQPTRIIVEYNPFSERTIQNM 435 (754)
T ss_pred ---HHHHHHhhccCC-cccCchhHHHHhh-cCCCccEEEeeCCCccHHHHHHH
Confidence 246677777765 4321 1222222 25677777777774 33334433
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.49 E-value=2.7e-08 Score=90.44 Aligned_cols=127 Identities=24% Similarity=0.275 Sum_probs=60.6
Q ss_pred CCCCCEEEcccCCCCCHHHHHHhhcCCCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCcCChHHHHHHHHhcCCCc
Q 006538 364 SLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSL 443 (641)
Q Consensus 364 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L 443 (641)
++.|++|++++ +.++.... .+.-.|.++.|+++.| .+... ..++.+++|+.|++++|.++. +..+.. .+.++
T Consensus 283 Wq~LtelDLS~-N~I~~iDE-SvKL~Pkir~L~lS~N-~i~~v--~nLa~L~~L~~LDLS~N~Ls~--~~Gwh~-KLGNI 354 (490)
T KOG1259|consen 283 WQELTELDLSG-NLITQIDE-SVKLAPKLRRLILSQN-RIRTV--QNLAELPQLQLLDLSGNLLAE--CVGWHL-KLGNI 354 (490)
T ss_pred Hhhhhhccccc-cchhhhhh-hhhhccceeEEecccc-ceeee--hhhhhcccceEeecccchhHh--hhhhHh-hhcCE
Confidence 34566666666 44433221 2234566666666665 34332 235556666666666664432 112222 35556
Q ss_pred cEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCH-HHHHHHHhcCCCCCEEeccCCC
Q 006538 444 VKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSD-NGILTLATCRVPISELRVRQCP 506 (641)
Q Consensus 444 ~~L~l~~c~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~L~~L~l~~~~ 506 (641)
+.|.++++.--+-.++..+ -+|..||+.+ |+|.. +.+..+. .+|.|+.+.+.+||
T Consensus 355 KtL~La~N~iE~LSGL~KL------YSLvnLDl~~-N~Ie~ldeV~~IG-~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 355 KTLKLAQNKIETLSGLRKL------YSLVNLDLSS-NQIEELDEVNHIG-NLPCLETLRLTGNP 410 (490)
T ss_pred eeeehhhhhHhhhhhhHhh------hhheeccccc-cchhhHHHhcccc-cccHHHHHhhcCCC
Confidence 6666655321112333333 4555666655 34442 2222232 45555555555554
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.37 E-value=1.6e-07 Score=85.60 Aligned_cols=128 Identities=26% Similarity=0.174 Sum_probs=77.5
Q ss_pred CCCCCcEEEccCCcCChHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCH-HHHHHHH
Q 006538 413 SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSD-NGILTLA 491 (641)
Q Consensus 413 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~-~~~~~l~ 491 (641)
....|+++++++|.|+...- -.+ ..|.++.|+++.+.-..-..+..+ ++|+.||+++ |.++. .|+.
T Consensus 282 TWq~LtelDLS~N~I~~iDE--SvK-L~Pkir~L~lS~N~i~~v~nLa~L------~~L~~LDLS~-N~Ls~~~Gwh--- 348 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDE--SVK-LAPKLRRLILSQNRIRTVQNLAEL------PQLQLLDLSG-NLLAECVGWH--- 348 (490)
T ss_pred hHhhhhhccccccchhhhhh--hhh-hccceeEEeccccceeeehhhhhc------ccceEeeccc-chhHhhhhhH---
Confidence 34567788888886653221 122 367888888887543333445555 7888888888 55542 2222
Q ss_pred hcCCCCCEEeccCCCCCCHHHHHHHHhccccCcccCCCCccEEeccCCCCCCHHHHHHhhCCCCCCceEEEecCCC
Q 006538 492 TCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 567 (641)
Q Consensus 492 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 567 (641)
..+-+++.|.+++| .+.+. ..+. .+-+|..||+.++.--.-+.+..+. .+|-|+.+.+.+|+
T Consensus 349 ~KLGNIKtL~La~N-~iE~L--SGL~---------KLYSLvnLDl~~N~Ie~ldeV~~IG--~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQN-KIETL--SGLR---------KLYSLVNLDLSSNQIEELDEVNHIG--NLPCLETLRLTGNP 410 (490)
T ss_pred hhhcCEeeeehhhh-hHhhh--hhhH---------hhhhheeccccccchhhHHHhcccc--cccHHHHHhhcCCC
Confidence 25678888888888 34332 1122 4456888888887622222333443 47888888888886
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.37 E-value=3.3e-08 Score=86.29 Aligned_cols=12 Identities=17% Similarity=0.124 Sum_probs=4.1
Q ss_pred CCCCCEEeccCC
Q 006538 494 RVPISELRVRQC 505 (641)
Q Consensus 494 ~~~L~~L~l~~~ 505 (641)
+|+|++|++++|
T Consensus 87 lp~L~~L~L~~N 98 (175)
T PF14580_consen 87 LPNLQELYLSNN 98 (175)
T ss_dssp -TT--EEE-TTS
T ss_pred CCcCCEEECcCC
Confidence 455555555554
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.34 E-value=6.1e-08 Score=91.72 Aligned_cols=236 Identities=14% Similarity=0.049 Sum_probs=118.7
Q ss_pred hCCCccEEEecCCCCCCHHHHHHHHHhCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEcccCCCCCHHHHHHhhcCC
Q 006538 311 KCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT 390 (641)
Q Consensus 311 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 390 (641)
.+++|+.|+|++ +.++..+... ++++++|.+|.+.+++.+++..-..+. ...+|+.|.+.- +.+.......+..++
T Consensus 89 ~l~~LRrLdLS~-N~Is~I~p~A-F~GL~~l~~Lvlyg~NkI~~l~k~~F~-gL~slqrLllNa-n~i~Cir~~al~dL~ 164 (498)
T KOG4237|consen 89 TLHRLRRLDLSK-NNISFIAPDA-FKGLASLLSLVLYGNNKITDLPKGAFG-GLSSLQRLLLNA-NHINCIRQDALRDLP 164 (498)
T ss_pred chhhhceecccc-cchhhcChHh-hhhhHhhhHHHhhcCCchhhhhhhHhh-hHHHHHHHhcCh-hhhcchhHHHHHHhh
Confidence 356777777777 4666554444 556667777776665566555444332 233555555543 233333444455666
Q ss_pred CCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCc-CChHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHH-----h-
Q 006538 391 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSD-ISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISAL-----F- 463 (641)
Q Consensus 391 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l-----~- 463 (641)
+|..|.+.++ .+....-..+..+..++.+.+..|. +.+-.+..+.. --.-.....++-..+.+..+... -
T Consensus 165 ~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~--~~a~~~ietsgarc~~p~rl~~~Ri~q~~a 241 (498)
T KOG4237|consen 165 SLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD--DLAMNPIETSGARCVSPYRLYYKRINQEDA 241 (498)
T ss_pred hcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhh--HHhhchhhcccceecchHHHHHHHhcccch
Confidence 6666666665 3433333344455666666665543 11111111100 00000000011000111111100 0
Q ss_pred --ccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhccccCcccCCCCccEEeccCCCC
Q 006538 464 --DGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGG 541 (641)
Q Consensus 464 --~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 541 (641)
..|....+..--.+.|.... .+-..-++.+++|++|++++| .|+...-..+. ....+++|.+..+.
T Consensus 242 ~kf~c~~esl~s~~~~~d~~d~-~cP~~cf~~L~~L~~lnlsnN-~i~~i~~~aFe---------~~a~l~eL~L~~N~- 309 (498)
T KOG4237|consen 242 RKFLCSLESLPSRLSSEDFPDS-ICPAKCFKKLPNLRKLNLSNN-KITRIEDGAFE---------GAAELQELYLTRNK- 309 (498)
T ss_pred hhhhhhHHhHHHhhccccCcCC-cChHHHHhhcccceEeccCCC-ccchhhhhhhc---------chhhhhhhhcCcch-
Confidence 00100122211222332222 222222458999999999999 58766555554 45679999999886
Q ss_pred CCHHHHHHhhCCCCCCceEEEecCCC
Q 006538 542 ITQLAFRWLKKPYFPRLRWLGVTGSV 567 (641)
Q Consensus 542 ~~~~~~~~l~~~~~~~L~~L~l~~~~ 567 (641)
+....-..+.. ..+|+.|++.+|.
T Consensus 310 l~~v~~~~f~~--ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 310 LEFVSSGMFQG--LSGLKTLSLYDNQ 333 (498)
T ss_pred HHHHHHHhhhc--cccceeeeecCCe
Confidence 55555555554 7899999999985
No 40
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=6.6e-07 Score=77.18 Aligned_cols=107 Identities=21% Similarity=0.281 Sum_probs=80.4
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhccccCcccCCCCccEEeccCCCCCCHHHHH
Q 006538 469 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFR 548 (641)
Q Consensus 469 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~ 548 (641)
-.++.+|-++ ..|...|+..+- .++.++.|.+.+|..+.|.++..+.. -.++|+.|+|++|+.||+.++.
T Consensus 101 ~~IeaVDAsd-s~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~--------~~~~L~~L~lsgC~rIT~~GL~ 170 (221)
T KOG3864|consen 101 VKIEAVDASD-SSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGG--------LAPSLQDLDLSGCPRITDGGLA 170 (221)
T ss_pred ceEEEEecCC-chHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcc--------cccchheeeccCCCeechhHHH
Confidence 4577777777 366667777654 67888888888888888888888887 5688888888888888888888
Q ss_pred HhhCCCCCCceEEEecCCC----CHHHHHHHHhhCCCeEEecC
Q 006538 549 WLKKPYFPRLRWLGVTGSV----NRDILDALARSRPFLNVACR 587 (641)
Q Consensus 549 ~l~~~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~l~~~~~ 587 (641)
.+.+ +++|+.|.+.+-+ ...+...+....|+..|...
T Consensus 171 ~L~~--lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~~~ 211 (221)
T KOG3864|consen 171 CLLK--LKNLRRLHLYDLPYVANLELVQRQLEEALPKCDIVGP 211 (221)
T ss_pred HHHH--hhhhHHHHhcCchhhhchHHHHHHHHHhCcccceech
Confidence 8877 8888888877764 24445556677888777644
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.32 E-value=2.7e-07 Score=80.55 Aligned_cols=103 Identities=24% Similarity=0.340 Sum_probs=25.4
Q ss_pred cCCCCCEEecCCCCCCChhhhHhhh-CCCCCcEEEccCCcCChHHHHHHHHhcCCCccEEecCCCCCCCHH--HHH-HHh
Q 006538 388 SNTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK--CIS-ALF 463 (641)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~--~~~-~l~ 463 (641)
++.++++|++.++ .++.. ..++ .+.+|+.|++++|.++. +..+.. +++|+.|+++++. ++.. ++. .+
T Consensus 17 n~~~~~~L~L~~n-~I~~I--e~L~~~l~~L~~L~Ls~N~I~~--l~~l~~--L~~L~~L~L~~N~-I~~i~~~l~~~l- 87 (175)
T PF14580_consen 17 NPVKLRELNLRGN-QISTI--ENLGATLDKLEVLDLSNNQITK--LEGLPG--LPRLKTLDLSNNR-ISSISEGLDKNL- 87 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT------TT--EEE--SS----S-CHHHHHH--
T ss_pred ccccccccccccc-ccccc--cchhhhhcCCCEEECCCCCCcc--ccCccC--hhhhhhcccCCCC-CCccccchHHhC-
Confidence 3344555555555 34332 2333 34556666666665543 222222 5566666666532 4422 221 22
Q ss_pred ccCCCCCccEEecCCCCCCCHH-HHHHHHhcCCCCCEEeccCCC
Q 006538 464 DGTSKLQLQELDLSNLPHLSDN-GILTLATCRVPISELRVRQCP 506 (641)
Q Consensus 464 ~~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~L~~L~l~~~~ 506 (641)
|+|++|++++ |.|.+. .+..+ +.+++|+.|++.+||
T Consensus 88 -----p~L~~L~L~~-N~I~~l~~l~~L-~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 88 -----PNLQELYLSN-NKISDLNELEPL-SSLPKLRVLSLEGNP 124 (175)
T ss_dssp -----TT--EEE-TT-S---SCCCCGGG-GG-TT--EEE-TT-G
T ss_pred -----CcCCEEECcC-CcCCChHHhHHH-HcCCCcceeeccCCc
Confidence 6667777666 455432 12222 256777777777776
No 42
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.24 E-value=4.2e-07 Score=61.12 Aligned_cols=37 Identities=22% Similarity=0.402 Sum_probs=32.1
Q ss_pred ccccchHHHHHHHHhhcccchhhhHhhhcccHHHHHH
Q 006538 10 SLDQLPAALLCTIITKLDVASISSVAATCSTFRACAA 46 (641)
Q Consensus 10 ~~~~LP~e~l~~I~~~L~~~d~~~~~~vcr~w~~~~~ 46 (641)
++.+||+|++.+||+||++.|+..++.|||+|++++.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~ 38 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVD 38 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHT
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHc
Confidence 4788999999999999999999999999999999984
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=9.5e-07 Score=80.63 Aligned_cols=191 Identities=15% Similarity=0.114 Sum_probs=92.4
Q ss_pred HHHHHHhCCCccEEEecCCCCCCHHHHHHHHHhCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEcccCCCCCHHHHH
Q 006538 305 ILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIK 384 (641)
Q Consensus 305 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 384 (641)
...+...+..++.++|.++.--....+..++.++|.|+.|+++.+.--.+ +..+.....+|+.|-|.+ ..+......
T Consensus 63 ~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~--I~~lp~p~~nl~~lVLNg-T~L~w~~~~ 139 (418)
T KOG2982|consen 63 VMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD--IKSLPLPLKNLRVLVLNG-TGLSWTQST 139 (418)
T ss_pred HHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc--cccCcccccceEEEEEcC-CCCChhhhh
Confidence 44455566777777777743233445666677777777777776432111 111111223666666665 333322222
Q ss_pred H-hhcCCCCCEEecCCCCC----CChhhhHhhhCCCCCcEEEccCCcCCh-HHHHHHHHhcCCCccEEecCCCCCCCHHH
Q 006538 385 S-LASNTGIKVLDLRDCKN----LGDEALRAISSLPQLKILLLDGSDISD-VGVSYLRLTVITSLVKLSLRGCKRLTDKC 458 (641)
Q Consensus 385 ~-l~~~~~L~~L~l~~~~~----~~~~~~~~l~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~~~L~~L~l~~c~~l~~~~ 458 (641)
. +..+|.++.|.++.|.. +.+...+. --+.++.|++..|.... .....+.. .+|++..+-+..|+ +.+..
T Consensus 140 s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~--~s~~v~tlh~~~c~~~~w~~~~~l~r-~Fpnv~sv~v~e~P-lK~~s 215 (418)
T KOG2982|consen 140 SSLDDLPKVTELHMSDNSLRQLNLDDNCIED--WSTEVLTLHQLPCLEQLWLNKNKLSR-IFPNVNSVFVCEGP-LKTES 215 (418)
T ss_pred hhhhcchhhhhhhhccchhhhhccccccccc--cchhhhhhhcCCcHHHHHHHHHhHHh-hcccchheeeecCc-ccchh
Confidence 2 33566666666665410 11111111 11234444444442211 11222333 56777777776665 33222
Q ss_pred HHHHhccCCCCCccEEecCCCCCCC-HHHHHHHHhcCCCCCEEeccCCC
Q 006538 459 ISALFDGTSKLQLQELDLSNLPHLS-DNGILTLATCRVPISELRVRQCP 506 (641)
Q Consensus 459 ~~~l~~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~~~L~~L~l~~~~ 506 (641)
-..-++ ++|.+-.|.|+. ++|. ..++.++. +++.|..|.++++|
T Consensus 216 ~ek~se--~~p~~~~LnL~~-~~idswasvD~Ln-~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 216 SEKGSE--PFPSLSCLNLGA-NNIDSWASVDALN-GFPQLVDLRVSENP 260 (418)
T ss_pred hcccCC--CCCcchhhhhcc-cccccHHHHHHHc-CCchhheeeccCCc
Confidence 221111 226666667766 4555 33444444 56777777777776
No 44
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.09 E-value=2.3e-06 Score=55.34 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=31.6
Q ss_pred chHHHHHHHHhhcccchhhhHhhhcccHHHHHH
Q 006538 14 LPAALLCTIITKLDVASISSVAATCSTFRACAA 46 (641)
Q Consensus 14 LP~e~l~~I~~~L~~~d~~~~~~vcr~w~~~~~ 46 (641)
||+|++..||.+|+..|+.+++.|||+|+.++.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999983
No 45
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=6.4e-06 Score=71.27 Aligned_cols=87 Identities=30% Similarity=0.426 Sum_probs=54.2
Q ss_pred CCcEEEccCCcCChHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCC
Q 006538 416 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRV 495 (641)
Q Consensus 416 ~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 495 (641)
.++.++-+++.|..+|+..+.. ++.++.|.+.+|..+.|.++..+.... ++|+.|+|++|..|++.|+..+. .++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~--l~~i~~l~l~~ck~~dD~~L~~l~~~~--~~L~~L~lsgC~rIT~~GL~~L~-~lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRD--LRSIKSLSLANCKYFDDWCLERLGGLA--PSLQDLDLSGCPRITDGGLACLL-KLK 176 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhc--cchhhhheeccccchhhHHHHHhcccc--cchheeeccCCCeechhHHHHHH-Hhh
Confidence 3455666666666666666655 666666666666666666666665422 66666666666666666666554 456
Q ss_pred CCCEEeccCCCC
Q 006538 496 PISELRVRQCPL 507 (641)
Q Consensus 496 ~L~~L~l~~~~~ 507 (641)
+|+.|.|.+-+.
T Consensus 177 nLr~L~l~~l~~ 188 (221)
T KOG3864|consen 177 NLRRLHLYDLPY 188 (221)
T ss_pred hhHHHHhcCchh
Confidence 666666655543
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.84 E-value=4.7e-06 Score=59.35 Aligned_cols=61 Identities=28% Similarity=0.324 Sum_probs=37.9
Q ss_pred CCCCEEEcccCCCCCHHHHHHhhcCCCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCcC
Q 006538 365 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDI 427 (641)
Q Consensus 365 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 427 (641)
|+|++|++++| .++..+...+..+++|++|++++| .++......+..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 35666666663 555544445556677777777766 56665556666677777777766643
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.81 E-value=1.5e-05 Score=88.05 Aligned_cols=17 Identities=35% Similarity=0.303 Sum_probs=9.2
Q ss_pred hCCCCCcEEEccCCcCC
Q 006538 412 SSLPQLKILLLDGSDIS 428 (641)
Q Consensus 412 ~~~~~L~~L~l~~~~l~ 428 (641)
..+++|+.|.+.++.+.
T Consensus 714 ~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 714 GSLGNLEELSILDCGIS 730 (889)
T ss_pred ccccCcceEEEEcCCCc
Confidence 34555555555555444
No 48
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.66 E-value=1.9e-07 Score=77.96 Aligned_cols=57 Identities=30% Similarity=0.398 Sum_probs=27.2
Q ss_pred CCCEEEcccCCCCCHHHHHHhhcCCCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCc
Q 006538 366 SLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSD 426 (641)
Q Consensus 366 ~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 426 (641)
+++.|.+++ +.++..+. .++.+.+|+.|+++++ .+.+. ...++.+++|+.|+++.|+
T Consensus 34 ~ITrLtLSH-NKl~~vpp-nia~l~nlevln~~nn-qie~l-p~~issl~klr~lnvgmnr 90 (264)
T KOG0617|consen 34 NITRLTLSH-NKLTVVPP-NIAELKNLEVLNLSNN-QIEEL-PTSISSLPKLRILNVGMNR 90 (264)
T ss_pred hhhhhhccc-CceeecCC-cHHHhhhhhhhhcccc-hhhhc-Chhhhhchhhhheecchhh
Confidence 445555555 34333221 2334555666666554 33332 2344555566666555553
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.64 E-value=3.3e-06 Score=86.54 Aligned_cols=106 Identities=25% Similarity=0.220 Sum_probs=62.5
Q ss_pred cCCCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCcCChHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHhccCC
Q 006538 388 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTS 467 (641)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 467 (641)
-++.|+.|+++.| +++... .+..+++|++|+|++|.+... ..+....| +|+.|.+.++.--+-.++..+
T Consensus 185 ll~ale~LnLshN-k~~~v~--~Lr~l~~LkhLDlsyN~L~~v--p~l~~~gc-~L~~L~lrnN~l~tL~gie~L----- 253 (1096)
T KOG1859|consen 185 LLPALESLNLSHN-KFTKVD--NLRRLPKLKHLDLSYNCLRHV--PQLSMVGC-KLQLLNLRNNALTTLRGIENL----- 253 (1096)
T ss_pred HHHHhhhhccchh-hhhhhH--HHHhcccccccccccchhccc--cccchhhh-hheeeeecccHHHhhhhHHhh-----
Confidence 4567778888877 554433 666777888888887755432 22222123 377777777442234555655
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 006538 468 KLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP 506 (641)
Q Consensus 468 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 506 (641)
++|+.||++. |-+.+-.-......+..|+.|+|.|||
T Consensus 254 -ksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 254 -KSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred -hhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 7788888877 455432222222234567777777776
No 50
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.63 E-value=3.9e-05 Score=84.84 Aligned_cols=232 Identities=17% Similarity=0.152 Sum_probs=119.0
Q ss_pred hCCCccEEEecCCCC-CCHHHHHHHHHhCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEcccCCCCCHHHHHHhhcC
Q 006538 311 KCASMESICLGGFCR-VTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASN 389 (641)
Q Consensus 311 ~~~~L~~L~l~~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 389 (641)
.+++|++|-+.++.. +... ...++..+|.|+.|++++|..+...+- ....+-+|+.|++++ ..+...+ ..+.++
T Consensus 543 ~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~--~I~~Li~LryL~L~~-t~I~~LP-~~l~~L 617 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPS--SIGELVHLRYLDLSD-TGISHLP-SGLGNL 617 (889)
T ss_pred CCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCCh--HHhhhhhhhcccccC-CCccccc-hHHHHH
Confidence 456788887777421 1111 233466788888888887655443322 123345888888887 3454332 245677
Q ss_pred CCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCc--CChHHHHHHHHhcCCCccEEecCCCCCC---CHHHHHHHhc
Q 006538 390 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSD--ISDVGVSYLRLTVITSLVKLSLRGCKRL---TDKCISALFD 464 (641)
Q Consensus 390 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--l~~~~~~~l~~~~~~~L~~L~l~~c~~l---~~~~~~~l~~ 464 (641)
..|.+|++..+..+... ...+..+++|+.|.+.... .+...+..+. .+.+|+.+....+... .-.++..+.
T Consensus 618 k~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~--~Le~L~~ls~~~~s~~~~e~l~~~~~L~- 693 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELE--NLEHLENLSITISSVLLLEDLLGMTRLR- 693 (889)
T ss_pred Hhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhh--cccchhhheeecchhHhHhhhhhhHHHH-
Confidence 88888888876433322 2333458888888887653 2222233332 3566666665443320 011111111
Q ss_pred cCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhccccCcccC-CCCccEEeccCCCCCC
Q 006538 465 GTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWY-GSSIRLLDLYNCGGIT 543 (641)
Q Consensus 465 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~-~~~L~~L~l~~c~~~~ 543 (641)
...+.+.+.+|...+.. .....+.+|+.|.+.+|. +.+........... .. ++++..+.+.+|....
T Consensus 694 ----~~~~~l~~~~~~~~~~~---~~~~~l~~L~~L~i~~~~-~~e~~~~~~~~~~~----~~~f~~l~~~~~~~~~~~r 761 (889)
T KOG4658|consen 694 ----SLLQSLSIEGCSKRTLI---SSLGSLGNLEELSILDCG-ISEIVIEWEESLIV----LLCFPNLSKVSILNCHMLR 761 (889)
T ss_pred ----HHhHhhhhcccccceee---cccccccCcceEEEEcCC-Cchhhcccccccch----hhhHHHHHHHHhhcccccc
Confidence 12223332222222111 111256788888888884 44332211110000 01 3456666666666554
Q ss_pred HHHHHHhhCCCCCCceEEEecCCC
Q 006538 544 QLAFRWLKKPYFPRLRWLGVTGSV 567 (641)
Q Consensus 544 ~~~~~~l~~~~~~~L~~L~l~~~~ 567 (641)
+.....+ .|+|+.|.+.+|.
T Consensus 762 ~l~~~~f----~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 762 DLTWLLF----APHLTSLSLVSCR 781 (889)
T ss_pred ccchhhc----cCcccEEEEeccc
Confidence 4333322 5788888888775
No 51
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.60 E-value=9.9e-06 Score=57.66 Aligned_cols=60 Identities=22% Similarity=0.344 Sum_probs=44.9
Q ss_pred CCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCcCChHHHHHHHHhcCCCccEEecCCCC
Q 006538 390 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCK 452 (641)
Q Consensus 390 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~ 452 (641)
|+|++|++++| .++......+.++++|+.|++++|.+.......+. .+++|++|++++|.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~--~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFS--NLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTT--TSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHc--CCCCCCEEeCcCCc
Confidence 57889999988 78887777888889999999998876643333333 37778888877753
No 52
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.58 E-value=7.4e-07 Score=74.43 Aligned_cols=126 Identities=21% Similarity=0.208 Sum_probs=70.5
Q ss_pred CCCCEEEcccCCCCCHHHHHHhhcCCCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCcCChHHHHHHHHhcCCCcc
Q 006538 365 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLV 444 (641)
Q Consensus 365 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~ 444 (641)
.+|+.|++.+ +++++.+. .++.+++|+.|+++-+ .+. .-...++.+|.|+.|++++|++.+..+..-+. .+..|+
T Consensus 56 ~nlevln~~n-nqie~lp~-~issl~klr~lnvgmn-rl~-~lprgfgs~p~levldltynnl~e~~lpgnff-~m~tlr 130 (264)
T KOG0617|consen 56 KNLEVLNLSN-NQIEELPT-SISSLPKLRILNVGMN-RLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFF-YMTTLR 130 (264)
T ss_pred hhhhhhhccc-chhhhcCh-hhhhchhhhheecchh-hhh-cCccccCCCchhhhhhccccccccccCCcchh-HHHHHH
Confidence 4666777766 45544433 4567888888888765 222 23356677888888888888777655432222 245566
Q ss_pred EEecCCCCC-CCHHHHHHHhccCCCCCccEEecCCCCCCC-HHHHHHHHhcCCCCCEEeccCC
Q 006538 445 KLSLRGCKR-LTDKCISALFDGTSKLQLQELDLSNLPHLS-DNGILTLATCRVPISELRVRQC 505 (641)
Q Consensus 445 ~L~l~~c~~-l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~~~L~~L~l~~~ 505 (641)
-|+++.+.. +-+..+..+ ++|+.|.+..++-++ +..+. .++.|++|.+.+|
T Consensus 131 alyl~dndfe~lp~dvg~l------t~lqil~lrdndll~lpkeig----~lt~lrelhiqgn 183 (264)
T KOG0617|consen 131 ALYLGDNDFEILPPDVGKL------TNLQILSLRDNDLLSLPKEIG----DLTRLRELHIQGN 183 (264)
T ss_pred HHHhcCCCcccCChhhhhh------cceeEEeeccCchhhCcHHHH----HHHHHHHHhcccc
Confidence 666665331 223333334 566666665533332 22222 2345566666555
No 53
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.51 E-value=1.7e-05 Score=81.51 Aligned_cols=220 Identities=25% Similarity=0.246 Sum_probs=134.8
Q ss_pred ccEEEecCCCCCCHHHHHHH---HHhCCCccEEEecCCCCCCHHHHHHHHhcC----CCCCEEEcccCCCCCHHHHHH--
Q 006538 315 MESICLGGFCRVTDTGFKTI---LHSCSNLYKLRVSHGTQLTDLVFHDISATS----LSLTHVCLRWCNLLTNHAIKS-- 385 (641)
Q Consensus 315 L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~----~~L~~L~l~~~~~l~~~~~~~-- 385 (641)
+..|.+.+| .+.+.++..+ +...+.|+.|+++++ .+.+.+...+.... +.|+.|.+..| .++..+...
T Consensus 89 l~~L~L~~~-~l~~~~~~~l~~~l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~ 165 (478)
T KOG4308|consen 89 LLHLSLANN-RLGDRGAEELAQALKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLA 165 (478)
T ss_pred HHHhhhhhC-ccccchHHHHHHHhcccccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHH
Confidence 667777775 4544444444 445578889999985 55577666665533 35666777775 334444333
Q ss_pred --hhcCCCCCEEecCCCCCCChhhhHhh--------hCCCCCcEEEccCCcCChHHHHHHHH--hcCCC-ccEEecCCCC
Q 006538 386 --LASNTGIKVLDLRDCKNLGDEALRAI--------SSLPQLKILLLDGSDISDVGVSYLRL--TVITS-LVKLSLRGCK 452 (641)
Q Consensus 386 --l~~~~~L~~L~l~~~~~~~~~~~~~l--------~~~~~L~~L~l~~~~l~~~~~~~l~~--~~~~~-L~~L~l~~c~ 452 (641)
+..++.++.++++.| .+...+...+ ....+++.|++..|.++......+.. ...+. +..|++.. +
T Consensus 166 ~~L~~~~~l~~l~l~~n-~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~-n 243 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLN-GLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS-N 243 (478)
T ss_pred HHHhcccchhHHHHHhc-ccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh-c
Confidence 336788888888887 4434333222 13567888888888877766655544 12233 55567765 3
Q ss_pred CCCHHHHHHHhccCCC--CCccEEecCCCCCCCHHHHHHHH---hcCCCCCEEeccCCCCCCHHHHHHHHhccccCcccC
Q 006538 453 RLTDKCISALFDGTSK--LQLQELDLSNLPHLSDNGILTLA---TCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWY 527 (641)
Q Consensus 453 ~l~~~~~~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~ 527 (641)
.+.|.++..+...... +.++++++.. +.+++.+...++ ..++.++.|.++.| .+++.+...+...+. .
T Consensus 244 ~l~d~g~~~L~~~l~~~~~~l~~l~l~~-nsi~~~~~~~L~~~l~~~~~l~~l~l~~n-~l~~~~~~~~~~~l~-----~ 316 (478)
T KOG4308|consen 244 KLGDVGVEKLLPCLSVLSETLRVLDLSR-NSITEKGVRDLAEVLVSCRQLEELSLSNN-PLTDYGVELLLEALE-----R 316 (478)
T ss_pred CcchHHHHHHHHHhcccchhhhhhhhhc-CCccccchHHHHHHHhhhHHHHHhhcccC-ccccHHHHHHHHHhh-----h
Confidence 4777777666554211 4678888888 466655444433 35667888888888 477777777666554 4
Q ss_pred CCCccEEeccCCCCCCHHH
Q 006538 528 GSSIRLLDLYNCGGITQLA 546 (641)
Q Consensus 528 ~~~L~~L~l~~c~~~~~~~ 546 (641)
...+.++.+.++...+..+
T Consensus 317 ~~~~~~~~l~~~~~~~~~~ 335 (478)
T KOG4308|consen 317 KTPLLHLVLGGTGKGTRGG 335 (478)
T ss_pred cccchhhhccccCccchhH
Confidence 5566666676665554443
No 54
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.43 E-value=6.1e-05 Score=77.43 Aligned_cols=315 Identities=22% Similarity=0.243 Sum_probs=156.3
Q ss_pred ccEEEeeccCCCHHHHHHHHh---cCCCCcEEecCCCCCCCCccccccchHHHHhhh----cC-CCCcEEEecccccccc
Q 006538 223 IQKLCLSVDYITDAMVGTISQ---GLVSLTHLDLRDAPLIEPRITFDLTNSGLQQIN----QH-GKLKHLSLIRSQEFLI 294 (641)
Q Consensus 223 L~~L~L~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~----~~-~~L~~L~l~~~~~~~~ 294 (641)
+..|.|.++.+.+.....+.+ ..+.|..|++++| .+++.+...+. .. +.++.|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n---------~l~~~g~~~l~~~l~~~~~~l~~L~l~------- 152 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGN---------NLGDEGARLLCEGLRLPQCLLQTLELV------- 152 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccC---------CCccHhHHHHHhhcccchHHHHHHHhh-------
Confidence 667777777776665555444 5568888888886 45565665553 11 345555553
Q ss_pred ccccccChhHHH---HHHHhCCCccEEEecCCCCCCHHHHHHHHH-------hCCCccEEEecCCCCCCHHHHHHHH---
Q 006538 295 TYFRRVNDLGIL---LMADKCASMESICLGGFCRVTDTGFKTILH-------SCSNLYKLRVSHGTQLTDLVFHDIS--- 361 (641)
Q Consensus 295 ~~~~~~~~~~l~---~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-------~~~~L~~L~l~~~~~l~~~~~~~~~--- 361 (641)
...++..+.. ........++.++++.|. +...+...+.+ ...++++|++++|.. +......+.
T Consensus 153 --~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~-l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~-t~~~c~~l~~~l 228 (478)
T KOG4308|consen 153 --SCSLTSEGAAPLAAVLEKNEHLTELDLSLNG-LIELGLLVLSQALESAASPLSSLETLKLSRCGV-TSSSCALLDEVL 228 (478)
T ss_pred --cccccccchHHHHHHHhcccchhHHHHHhcc-cchhhhHHHhhhhhhhhcccccHHHHhhhhcCc-ChHHHHHHHHHH
Confidence 2233333322 222235677777777753 33333322222 234677778877633 333322222
Q ss_pred hcCCC-CCEEEcccCCCCCHHHHHHhh----cC-CCCCEEecCCCCCCChhhhHhh----hCCCCCcEEEccCCcCChHH
Q 006538 362 ATSLS-LTHVCLRWCNLLTNHAIKSLA----SN-TGIKVLDLRDCKNLGDEALRAI----SSLPQLKILLLDGSDISDVG 431 (641)
Q Consensus 362 ~~~~~-L~~L~l~~~~~l~~~~~~~l~----~~-~~L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~l~~~~ 431 (641)
...++ +.+|++.. +.+.+.++..+. .. +.+++++++.| .+++.+...+ ..+++++.+.+++|.+.+.+
T Consensus 229 ~~~~~~~~el~l~~-n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~ 306 (478)
T KOG4308|consen 229 ASGESLLRELDLAS-NKLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYG 306 (478)
T ss_pred hccchhhHHHHHHh-cCcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHH
Confidence 22233 55566665 566666555443 23 56677788877 6666555443 35677778888887777766
Q ss_pred HHHHHH--hcCCCccEEecCCCCCCCHHHHHHHhccCCC-CCccEEecCCCCCCCHHHHHHHHh--cCC--CCCEEeccC
Q 006538 432 VSYLRL--TVITSLVKLSLRGCKRLTDKCISALFDGTSK-LQLQELDLSNLPHLSDNGILTLAT--CRV--PISELRVRQ 504 (641)
Q Consensus 432 ~~~l~~--~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~--~~~--~L~~L~l~~ 504 (641)
...+.. .....+..+.+.++...+......++..-.. ..+.....++ +...+.+...+.. .-+ .+..+++..
T Consensus 307 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (478)
T KOG4308|consen 307 VELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISG-NRVGEEGLALLVLAKSNPKSELLRLSLNS 385 (478)
T ss_pred HHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhh-ccchHHHHHHHhhhhcccCcccchhhhhc
Confidence 554444 1134455555555444432222222111000 1222222222 3444333332211 112 344445544
Q ss_pred CCCCCHHHHHHHHhccccCcccCCCCccEEeccCCCCCCHHHHHHhhC--CCCCCceEEEecCCC
Q 006538 505 CPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK--PYFPRLRWLGVTGSV 567 (641)
Q Consensus 505 ~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~l~~--~~~~~L~~L~l~~~~ 567 (641)
+ .+...+...++.+.. .++.++.++++.+....+........ ... .++.+.++.+.
T Consensus 386 ~-~~~~~~~~~l~~~~~-----~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~ 443 (478)
T KOG4308|consen 386 Q-VIEGRGALRLAAQLA-----SNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNP 443 (478)
T ss_pred c-ccccHHHHHhhhhhh-----hcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccCh
Confidence 4 343444333333222 55667777777665333222221111 123 66666666653
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.35 E-value=2.9e-05 Score=79.84 Aligned_cols=200 Identities=19% Similarity=0.161 Sum_probs=109.3
Q ss_pred HHHHHHhCCCccEEEecCCCCCCHH-HHHHHHhcCCCCCEEEcccCCCCCHHHHHHhhcCCCCCEEecCCCCCCChhhhH
Q 006538 331 FKTILHSCSNLYKLRVSHGTQLTDL-VFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALR 409 (641)
Q Consensus 331 ~~~l~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 409 (641)
+.-++.-+++++.|.+-....-... ++. ++ .+.+|++|.+.+|+--+..|+..+. ..|++|.-++ -.+.--.
T Consensus 76 Lq~i~d~lqkt~~lkl~~~pa~~pt~pi~-if-pF~sLr~LElrg~~L~~~~GL~~lr--~qLe~LIC~~---Sl~Al~~ 148 (1096)
T KOG1859|consen 76 LQRILDFLQKTKVLKLLPSPARDPTEPIS-IF-PFRSLRVLELRGCDLSTAKGLQELR--HQLEKLICHN---SLDALRH 148 (1096)
T ss_pred HHHHHHHHhhheeeeecccCCCCCCCCce-ec-cccceeeEEecCcchhhhhhhHHHH--Hhhhhhhhhc---cHHHHHH
Confidence 3444555566666666543221111 222 11 3458888888888655544444433 2344443221 1111111
Q ss_pred hhh----------CCCCCcEEEccCCcCC--hHHHHHHHHhcCCCccEEecCCCCCCCHHH-HHHHhccCCCCCccEEec
Q 006538 410 AIS----------SLPQLKILLLDGSDIS--DVGVSYLRLTVITSLVKLSLRGCKRLTDKC-ISALFDGTSKLQLQELDL 476 (641)
Q Consensus 410 ~l~----------~~~~L~~L~l~~~~l~--~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~-~~~l~~~~~~~~L~~L~l 476 (641)
.|+ ....|...++++|.+. |..+. .++.|++|+|+.+. +++.. +.. | ++|++|||
T Consensus 149 v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLq-----ll~ale~LnLshNk-~~~v~~Lr~----l--~~LkhLDl 216 (1096)
T KOG1859|consen 149 VFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQ-----LLPALESLNLSHNK-FTKVDNLRR----L--PKLKHLDL 216 (1096)
T ss_pred HHHHhccccccchhhhhHhhhhcchhhHHhHHHHHH-----HHHHhhhhccchhh-hhhhHHHHh----c--cccccccc
Confidence 111 1234566667777543 22232 36889999999854 55433 332 3 89999999
Q ss_pred CCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhccccCcccCCCCccEEeccCCCCCCH-HHHHHhhCCCC
Q 006538 477 SNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ-LAFRWLKKPYF 555 (641)
Q Consensus 477 ~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~-~~~~~l~~~~~ 555 (641)
+. |.+.-..-..+. +|. |..|.+++|. ++. +..+. ++++|+.||+++|- +.. ..+..+-. +
T Consensus 217 sy-N~L~~vp~l~~~-gc~-L~~L~lrnN~-l~t--L~gie---------~LksL~~LDlsyNl-l~~hseL~pLws--L 278 (1096)
T KOG1859|consen 217 SY-NCLRHVPQLSMV-GCK-LQLLNLRNNA-LTT--LRGIE---------NLKSLYGLDLSYNL-LSEHSELEPLWS--L 278 (1096)
T ss_pred cc-chhccccccchh-hhh-heeeeecccH-HHh--hhhHH---------hhhhhhccchhHhh-hhcchhhhHHHH--H
Confidence 98 555422111111 444 9999999994 543 23333 56779999999875 322 12222222 4
Q ss_pred CCceEEEecCCC
Q 006538 556 PRLRWLGVTGSV 567 (641)
Q Consensus 556 ~~L~~L~l~~~~ 567 (641)
..|+.|.+.||+
T Consensus 279 s~L~~L~LeGNP 290 (1096)
T KOG1859|consen 279 SSLIVLWLEGNP 290 (1096)
T ss_pred HHHHHHhhcCCc
Confidence 579999999997
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.17 E-value=0.00068 Score=67.16 Aligned_cols=70 Identities=10% Similarity=0.209 Sum_probs=38.2
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHHhCC-CccEEEecCCCCCCHHHHHHHHhcCCCCCEEEcccCCCCCHHHHHHhhcCC
Q 006538 312 CASMESICLGGFCRVTDTGFKTILHSCS-NLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT 390 (641)
Q Consensus 312 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 390 (641)
+++++.|++++| .+.... .+| +|++|.+++|..++..+- . ..++|+.|++++|..+.. -.+
T Consensus 51 ~~~l~~L~Is~c-~L~sLP------~LP~sLtsL~Lsnc~nLtsLP~-~---LP~nLe~L~Ls~Cs~L~s-------LP~ 112 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP------VLPNELTEITIENCNNLTTLPG-S---IPEGLEKLTVCHCPEISG-------LPE 112 (426)
T ss_pred hcCCCEEEeCCC-CCcccC------CCCCCCcEEEccCCCCcccCCc-h---hhhhhhheEccCcccccc-------ccc
Confidence 577778888776 443321 133 577777777665433221 1 124677777776654431 124
Q ss_pred CCCEEecCC
Q 006538 391 GIKVLDLRD 399 (641)
Q Consensus 391 ~L~~L~l~~ 399 (641)
+|+.|++..
T Consensus 113 sLe~L~L~~ 121 (426)
T PRK15386 113 SVRSLEIKG 121 (426)
T ss_pred ccceEEeCC
Confidence 566666653
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.00021 Score=65.09 Aligned_cols=54 Identities=31% Similarity=0.442 Sum_probs=25.5
Q ss_pred CCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCcCChHHHHHHHHhcCCCccEEecCC
Q 006538 390 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRG 450 (641)
Q Consensus 390 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L~l~~ 450 (641)
.+.++|+..+| .++++. ...+++.|+.|.|+-|.|+. +..+.. |++|++|+|..
T Consensus 19 ~~vkKLNcwg~-~L~DIs--ic~kMp~lEVLsLSvNkIss--L~pl~r--CtrLkElYLRk 72 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDIS--ICEKMPLLEVLSLSVNKISS--LAPLQR--CTRLKELYLRK 72 (388)
T ss_pred HHhhhhcccCC-CccHHH--HHHhcccceeEEeecccccc--chhHHH--HHHHHHHHHHh
Confidence 34455555555 444432 22345555555555555432 222322 55555555544
No 58
>PLN03150 hypothetical protein; Provisional
Probab=96.85 E-value=0.0018 Score=70.17 Aligned_cols=105 Identities=24% Similarity=0.181 Sum_probs=61.4
Q ss_pred CCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCcCChHHHHHHHHhcCCCccEEecCCCCCCC---HHHHHHHhccCCC
Q 006538 392 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT---DKCISALFDGTSK 468 (641)
Q Consensus 392 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~---~~~~~~l~~~~~~ 468 (641)
++.|+++++ .+.......+..+++|+.|+|++|.+.......+.. +++|+.|++++|. ++ +..+..+
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~--l~~L~~LdLs~N~-lsg~iP~~l~~L------ 489 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS--ITSLEVLDLSYNS-FNGSIPESLGQL------ 489 (623)
T ss_pred EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhC--CCCCCEEECCCCC-CCCCCchHHhcC------
Confidence 566777766 555444456667777777777777665433333443 7777777777754 33 3333333
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCEEeccCCCC
Q 006538 469 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPL 507 (641)
Q Consensus 469 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 507 (641)
++|+.|+|++ +.++...-..+.....++..+++.+|+.
T Consensus 490 ~~L~~L~Ls~-N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 490 TSLRILNLNG-NSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCCCEEECcC-CcccccCChHHhhccccCceEEecCCcc
Confidence 7788888877 3444221122222234566777777753
No 59
>PLN03150 hypothetical protein; Provisional
Probab=96.79 E-value=0.0026 Score=68.90 Aligned_cols=107 Identities=15% Similarity=0.146 Sum_probs=62.9
Q ss_pred CCcEEEccCCcCChHHHHHHHHhcCCCccEEecCCCCCCC---HHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 006538 416 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT---DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT 492 (641)
Q Consensus 416 ~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~---~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 492 (641)
.++.|+|+++.+.......+.. +++|+.|+|++|. ++ +..+..+ ++|+.|+|++ +.++...-..+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~--L~~L~~L~Ls~N~-l~g~iP~~~~~l------~~L~~LdLs~-N~lsg~iP~~l~- 487 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISK--LRHLQSINLSGNS-IRGNIPPSLGSI------TSLEVLDLSY-NSFNGSIPESLG- 487 (623)
T ss_pred EEEEEECCCCCccccCCHHHhC--CCCCCEEECCCCc-ccCcCChHHhCC------CCCCEEECCC-CCCCCCCchHHh-
Confidence 3677788887765444444444 7888888888764 33 2233333 7888888887 455522222222
Q ss_pred cCCCCCEEeccCCCCCCHHHHHHHHhccccCcccCCCCccEEeccCCCCC
Q 006538 493 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGI 542 (641)
Q Consensus 493 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~~ 542 (641)
.+++|+.|++++| .++......+.. ...++..+++.+|..+
T Consensus 488 ~L~~L~~L~Ls~N-~l~g~iP~~l~~--------~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 488 QLTSLRILNLNGN-SLSGRVPAALGG--------RLLHRASFNFTDNAGL 528 (623)
T ss_pred cCCCCCEEECcCC-cccccCChHHhh--------ccccCceEEecCCccc
Confidence 6788888888888 355333333332 2345667777766543
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.73 E-value=0.0027 Score=41.15 Aligned_cols=37 Identities=32% Similarity=0.477 Sum_probs=21.1
Q ss_pred CCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCcCC
Q 006538 390 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 428 (641)
Q Consensus 390 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 428 (641)
++|++|++++| .+++... .++++++|+.|++++|.++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~-~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPP-ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSS-S-SSHGG-HGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCC-CCcccCc-hHhCCCCCCEEEecCCCCC
Confidence 35666666666 5554332 2666666666666666655
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.59 E-value=0.00054 Score=62.30 Aligned_cols=87 Identities=22% Similarity=0.271 Sum_probs=44.7
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhccccCcccCCCCccEEeccCCCCC--CHHH
Q 006538 469 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGI--TQLA 546 (641)
Q Consensus 469 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~~--~~~~ 546 (641)
|+|++|.++.++.-...++..++..+|+|++|++++| .+.+..-..-.. .+.+|..|++..|.-. ++-.
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~--------~l~nL~~Ldl~n~~~~~l~dyr 135 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLK--------ELENLKSLDLFNCSVTNLDDYR 135 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhh--------hhcchhhhhcccCCccccccHH
Confidence 6777777766322223445555556677777777777 355422111111 4566777777776521 1111
Q ss_pred HHHhhCCCCCCceEEEecCC
Q 006538 547 FRWLKKPYFPRLRWLGVTGS 566 (641)
Q Consensus 547 ~~~l~~~~~~~L~~L~l~~~ 566 (641)
-..+.. +|+|++|+-..+
T Consensus 136 e~vf~l--l~~L~~LD~~dv 153 (260)
T KOG2739|consen 136 EKVFLL--LPSLKYLDGCDV 153 (260)
T ss_pred HHHHHH--hhhhcccccccc
Confidence 122222 566776664443
No 62
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.51 E-value=0.0036 Score=35.25 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=9.0
Q ss_pred CCCCEEeccCCCCCCHHHHHHH
Q 006538 495 VPISELRVRQCPLIGDTSVIAL 516 (641)
Q Consensus 495 ~~L~~L~l~~~~~l~~~~~~~l 516 (641)
++|++|+|++|+.++|.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 3344444444444444444333
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.46 E-value=0.006 Score=60.64 Aligned_cols=138 Identities=16% Similarity=0.187 Sum_probs=83.5
Q ss_pred cCCCCCEEEcccCCCCCHHHHHHhhcCCCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCC-cCChHHHHHHHHhcCC
Q 006538 363 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS-DISDVGVSYLRLTVIT 441 (641)
Q Consensus 363 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~ 441 (641)
.+++++.|++++| .++..+ . -.++|+.|.+++|..++... ..+ .++|+.|++++| .+. . ..+
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP--~--LP~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~L~-----s----LP~ 112 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLP--V--LPNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPEIS-----G----LPE 112 (426)
T ss_pred HhcCCCEEEeCCC-CCcccC--C--CCCCCcEEEccCCCCcccCC-chh--hhhhhheEccCccccc-----c----ccc
Confidence 4689999999998 555443 1 23479999999987764322 122 258999999988 443 1 235
Q ss_pred CccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhccc
Q 006538 442 SLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLV 521 (641)
Q Consensus 442 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 521 (641)
+|+.|.+.. .... .+..++ ++|+.|.+.+++......... .-.++|++|.+++|..+. +...
T Consensus 113 sLe~L~L~~-n~~~--~L~~LP-----ssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~------LP~~-- 174 (426)
T PRK15386 113 SVRSLEIKG-SATD--SIKNVP-----NGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII------LPEK-- 174 (426)
T ss_pred ccceEEeCC-CCCc--ccccCc-----chHhheecccccccccccccc--ccCCcccEEEecCCCccc------Cccc--
Confidence 788888864 2222 123332 788888886533222111111 012689999999996331 1110
Q ss_pred cCcccCCCCccEEeccCCC
Q 006538 522 DDDRWYGSSIRLLDLYNCG 540 (641)
Q Consensus 522 ~~~~~~~~~L~~L~l~~c~ 540 (641)
-..+|+.|.++.+.
T Consensus 175 -----LP~SLk~L~ls~n~ 188 (426)
T PRK15386 175 -----LPESLQSITLHIEQ 188 (426)
T ss_pred -----ccccCcEEEecccc
Confidence 22579999987653
No 64
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.45 E-value=0.0025 Score=65.52 Aligned_cols=145 Identities=28% Similarity=0.293 Sum_probs=68.8
Q ss_pred CCCEEEcccCCCCCHHHHHHhhcCCCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCcCChHHHHHHHHhcCCCccE
Q 006538 366 SLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVK 445 (641)
Q Consensus 366 ~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~ 445 (641)
+|+.|++++ +.+.... ..+..+++|+.|++++| .+.+... .....++|+.|++++|.+.+..... . ....|++
T Consensus 141 nL~~L~l~~-N~i~~l~-~~~~~l~~L~~L~l~~N-~l~~l~~-~~~~~~~L~~L~ls~N~i~~l~~~~--~-~~~~L~~ 213 (394)
T COG4886 141 NLKELDLSD-NKIESLP-SPLRNLPNLKNLDLSFN-DLSDLPK-LLSNLSNLNNLDLSGNKISDLPPEI--E-LLSALEE 213 (394)
T ss_pred hcccccccc-cchhhhh-hhhhccccccccccCCc-hhhhhhh-hhhhhhhhhheeccCCccccCchhh--h-hhhhhhh
Confidence 455555554 3333221 23345666666666665 3433221 1114556666666666554322211 1 1334666
Q ss_pred EecCCCCCCC-HHHHHHHhccCCCCCccEEecCCCCCCCH--HHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcccc
Q 006538 446 LSLRGCKRLT-DKCISALFDGTSKLQLQELDLSNLPHLSD--NGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVD 522 (641)
Q Consensus 446 L~l~~c~~l~-~~~~~~l~~~~~~~~L~~L~l~~~~~l~~--~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 522 (641)
|.+++...+. ...+..+ +++..+.+.+ +.+.+ ..+. .+++|+.|++++| .+++... +.
T Consensus 214 l~~~~N~~~~~~~~~~~~------~~l~~l~l~~-n~~~~~~~~~~----~l~~l~~L~~s~n-~i~~i~~--~~----- 274 (394)
T COG4886 214 LDLSNNSIIELLSSLSNL------KNLSGLELSN-NKLEDLPESIG----NLSNLETLDLSNN-QISSISS--LG----- 274 (394)
T ss_pred hhhcCCcceecchhhhhc------ccccccccCC-ceeeeccchhc----cccccceeccccc-ccccccc--cc-----
Confidence 6666542222 2222322 4555555544 33332 2222 4556667766666 3544433 22
Q ss_pred CcccCCCCccEEeccCCC
Q 006538 523 DDRWYGSSIRLLDLYNCG 540 (641)
Q Consensus 523 ~~~~~~~~L~~L~l~~c~ 540 (641)
...+|+.|+++++.
T Consensus 275 ----~~~~l~~L~~s~n~ 288 (394)
T COG4886 275 ----SLTNLRELDLSGNS 288 (394)
T ss_pred ----ccCccCEEeccCcc
Confidence 44666666666654
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.0011 Score=60.49 Aligned_cols=115 Identities=19% Similarity=0.187 Sum_probs=77.1
Q ss_pred CCCCcEEEccCCcCChHHHHHHHHhcCCCccEEecCCCCCCCH-HHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHh
Q 006538 414 LPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD-KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT 492 (641)
Q Consensus 414 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~-~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 492 (641)
+.+.+.|++++|+++|..+- . .++.|+.|.|+-+. |+. ..+.. | ++|++|+|.. |.|.+..-....+
T Consensus 18 l~~vkKLNcwg~~L~DIsic---~-kMp~lEVLsLSvNk-IssL~pl~r----C--trLkElYLRk-N~I~sldEL~YLk 85 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISIC---E-KMPLLEVLSLSVNK-ISSLAPLQR----C--TRLKELYLRK-NCIESLDELEYLK 85 (388)
T ss_pred HHHhhhhcccCCCccHHHHH---H-hcccceeEEeeccc-cccchhHHH----H--HHHHHHHHHh-cccccHHHHHHHh
Confidence 45778899999999875442 3 48899999998743 542 22332 3 8999999988 6777655555556
Q ss_pred cCCCCCEEeccCCCCCCHHHHHHHHhccccCcccCCCCccEEeccCCCCCCHHHHH
Q 006538 493 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFR 548 (641)
Q Consensus 493 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~ 548 (641)
++|+|+.|.|..|+-....|-..-...+. .+|+|+.||=. -++...+.
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR-----~LPnLkKLDnv---~VteeEle 133 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLR-----VLPNLKKLDNV---PVTEEELE 133 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHH-----HcccchhccCc---cccHHHHH
Confidence 89999999999888555444433332222 67888888643 25555443
No 66
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.32 E-value=0.0051 Score=34.62 Aligned_cols=22 Identities=41% Similarity=0.681 Sum_probs=10.7
Q ss_pred CCccEEecCCCCCCCHHHHHHH
Q 006538 469 LQLQELDLSNLPHLSDNGILTL 490 (641)
Q Consensus 469 ~~L~~L~l~~~~~l~~~~~~~l 490 (641)
++|++|+|++|.+|+|.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4455555555545555444443
No 67
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.28 E-value=0.0038 Score=64.14 Aligned_cols=171 Identities=28% Similarity=0.298 Sum_probs=109.3
Q ss_pred CCCCEEEcccCCCCCHHHHHHhhcC-CCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCcCChHHHHHHHHhcCCCc
Q 006538 365 LSLTHVCLRWCNLLTNHAIKSLASN-TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSL 443 (641)
Q Consensus 365 ~~L~~L~l~~~~~l~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L 443 (641)
+.++.|.+.+ +.+++... ..... .+|+.|+++++ .+.... ..+..+++|+.|++++|.+++...... . .+.|
T Consensus 116 ~~l~~L~l~~-n~i~~i~~-~~~~~~~nL~~L~l~~N-~i~~l~-~~~~~l~~L~~L~l~~N~l~~l~~~~~-~--~~~L 188 (394)
T COG4886 116 TNLTSLDLDN-NNITDIPP-LIGLLKSNLKELDLSDN-KIESLP-SPLRNLPNLKNLDLSFNDLSDLPKLLS-N--LSNL 188 (394)
T ss_pred cceeEEecCC-cccccCcc-ccccchhhccccccccc-chhhhh-hhhhccccccccccCCchhhhhhhhhh-h--hhhh
Confidence 4566666665 33333221 11234 38999999998 554432 466789999999999998876444321 2 7899
Q ss_pred cEEecCCCCCCCHHHHH-HHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcccc
Q 006538 444 VKLSLRGCKRLTDKCIS-ALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVD 522 (641)
Q Consensus 444 ~~L~l~~c~~l~~~~~~-~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 522 (641)
+.|+++++. +++.... ... ..|++|.+++...+...... ..+.++..+.+.++. +.+. ...+.
T Consensus 189 ~~L~ls~N~-i~~l~~~~~~~-----~~L~~l~~~~N~~~~~~~~~---~~~~~l~~l~l~~n~-~~~~-~~~~~----- 252 (394)
T COG4886 189 NNLDLSGNK-ISDLPPEIELL-----SALEELDLSNNSIIELLSSL---SNLKNLSGLELSNNK-LEDL-PESIG----- 252 (394)
T ss_pred hheeccCCc-cccCchhhhhh-----hhhhhhhhcCCcceecchhh---hhcccccccccCCce-eeec-cchhc-----
Confidence 999999954 5432221 121 56999999984234322222 266788888888884 4432 11122
Q ss_pred CcccCCCCccEEeccCCCCCCHHHHHHhhCCCCCCceEEEecCCC
Q 006538 523 DDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 567 (641)
Q Consensus 523 ~~~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 567 (641)
.+++++.|+++++. +++... +. ...+|+.|+++++.
T Consensus 253 ----~l~~l~~L~~s~n~-i~~i~~--~~--~~~~l~~L~~s~n~ 288 (394)
T COG4886 253 ----NLSNLETLDLSNNQ-ISSISS--LG--SLTNLRELDLSGNS 288 (394)
T ss_pred ----cccccceecccccc-cccccc--cc--ccCccCEEeccCcc
Confidence 66779999999987 555432 33 37899999999873
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.26 E-value=0.0011 Score=60.27 Aligned_cols=103 Identities=17% Similarity=0.127 Sum_probs=67.1
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhccccCcccCCCCccEEeccCCCCCCH-HHH
Q 006538 469 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ-LAF 547 (641)
Q Consensus 469 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~-~~~ 547 (641)
..|+.|.+.++-..+-..+. .+|+|++|.++.|..--..++..++. .+|+|++|+++++. +.+ ..+
T Consensus 43 ~~le~ls~~n~gltt~~~~P----~Lp~LkkL~lsdn~~~~~~~l~vl~e--------~~P~l~~l~ls~Nk-i~~lstl 109 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFP----KLPKLKKLELSDNYRRVSGGLEVLAE--------KAPNLKVLNLSGNK-IKDLSTL 109 (260)
T ss_pred cchhhhhhhccceeecccCC----CcchhhhhcccCCcccccccceehhh--------hCCceeEEeecCCc-ccccccc
Confidence 45666666664322222232 56899999999995334456777776 77999999999987 653 334
Q ss_pred HHhhCCCCCCceEEEecCCCC---HHHHHHHHhhCCCeEEec
Q 006538 548 RWLKKPYFPRLRWLGVTGSVN---RDILDALARSRPFLNVAC 586 (641)
Q Consensus 548 ~~l~~~~~~~L~~L~l~~~~~---~~~~~~~~~~~~~l~~~~ 586 (641)
..+.. +++|..|++.+|.. ..--+.+....|.+++..
T Consensus 110 ~pl~~--l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 110 RPLKE--LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred chhhh--hcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 44444 78899999999952 222233444567666653
No 69
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.21 E-value=0.0033 Score=54.82 Aligned_cols=60 Identities=25% Similarity=0.302 Sum_probs=26.4
Q ss_pred cCCCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCcCChHH-HHHHHHhcCCCccEEecCC
Q 006538 388 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVG-VSYLRLTVITSLVKLSLRG 450 (641)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~~~L~~L~l~~ 450 (641)
.++.|.+|.+.+| .++..+..--.-+|+|+.|.+.+|++...+ +..++. ||.|++|.+-+
T Consensus 62 ~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~--~p~L~~Ltll~ 122 (233)
T KOG1644|consen 62 HLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLAS--CPKLEYLTLLG 122 (233)
T ss_pred CccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhcc--CCccceeeecC
Confidence 4444555555544 344433222223445555555555443322 223333 55555555544
No 70
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.72 E-value=0.0051 Score=53.71 Aligned_cols=84 Identities=19% Similarity=0.189 Sum_probs=46.7
Q ss_pred CCccEEecCCCCCCCH--HHHHHHHhcCCCCCEEeccCCCCCCHHH-HHHHHhccccCcccCCCCccEEeccCCCCCCHH
Q 006538 469 LQLQELDLSNLPHLSD--NGILTLATCRVPISELRVRQCPLIGDTS-VIALASMLVDDDRWYGSSIRLLDLYNCGGITQL 545 (641)
Q Consensus 469 ~~L~~L~l~~~~~l~~--~~~~~l~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~ 545 (641)
+.|.+|.+++ |.|+. ..+. ..+|+|+.|.+.+| +|...+ +.-++ .||+|++|.+-+++ ++..
T Consensus 64 ~rL~tLll~n-NrIt~I~p~L~---~~~p~l~~L~LtnN-si~~l~dl~pLa---------~~p~L~~Ltll~Np-v~~k 128 (233)
T KOG1644|consen 64 PRLHTLLLNN-NRITRIDPDLD---TFLPNLKTLILTNN-SIQELGDLDPLA---------SCPKLEYLTLLGNP-VEHK 128 (233)
T ss_pred cccceEEecC-Ccceeeccchh---hhccccceEEecCc-chhhhhhcchhc---------cCCccceeeecCCc-hhcc
Confidence 6667777766 55552 2222 24567777777777 354443 22333 67777777777776 3322
Q ss_pred H-HHHhhCCCCCCceEEEecCCC
Q 006538 546 A-FRWLKKPYFPRLRWLGVTGSV 567 (641)
Q Consensus 546 ~-~~~l~~~~~~~L~~L~l~~~~ 567 (641)
. .....--.+|+|+.|++.+..
T Consensus 129 ~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 129 KNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCceeEEEEecCcceEeehhhhh
Confidence 1 110000126788888887764
No 71
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.51 E-value=0.0041 Score=50.65 Aligned_cols=84 Identities=24% Similarity=0.281 Sum_probs=45.3
Q ss_pred HhhcCCCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCcCChHHHHHHHHhcCCCccEEecCCCCCCC-HHHHHHHh
Q 006538 385 SLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-DKCISALF 463 (641)
Q Consensus 385 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~-~~~~~~l~ 463 (641)
.+.....|+..++++| .+.+.....-..+|.++.|++.+|.+++.... ++. ++.|+.|+++.++-.. +..+..+
T Consensus 48 ~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aa--m~aLr~lNl~~N~l~~~p~vi~~L- 122 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAA--MPALRSLNLRFNPLNAEPRVIAPL- 122 (177)
T ss_pred HHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHH-Hhh--hHHhhhcccccCccccchHHHHHH-
Confidence 3445566666666665 44443333333556666777777666655444 444 6667777776644211 2222223
Q ss_pred ccCCCCCccEEecCC
Q 006538 464 DGTSKLQLQELDLSN 478 (641)
Q Consensus 464 ~~~~~~~L~~L~l~~ 478 (641)
.+|-.|+..+
T Consensus 123 -----~~l~~Lds~~ 132 (177)
T KOG4579|consen 123 -----IKLDMLDSPE 132 (177)
T ss_pred -----HhHHHhcCCC
Confidence 5566666655
No 72
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.13 E-value=0.029 Score=36.37 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=27.3
Q ss_pred CCCCEEEcccCCCCCHHHHHHhhcCCCCCEEecCCCCCCCh
Q 006538 365 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGD 405 (641)
Q Consensus 365 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 405 (641)
++|++|++++ +.+++.+. .+..+++|+.|++++| .+++
T Consensus 1 ~~L~~L~l~~-N~i~~l~~-~l~~l~~L~~L~l~~N-~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPP-ELSNLPNLETLNLSNN-PISD 38 (44)
T ss_dssp TT-SEEEETS-SS-SSHGG-HGTTCTTSSEEEETSS-CCSB
T ss_pred CcceEEEccC-CCCcccCc-hHhCCCCCCEEEecCC-CCCC
Confidence 4788888888 56665443 3778999999999998 5654
No 73
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=95.02 E-value=0.015 Score=57.25 Aligned_cols=37 Identities=22% Similarity=0.421 Sum_probs=34.5
Q ss_pred ccccchHHHHHHHHhhcc-cchhhhHhhhcccHHHHHH
Q 006538 10 SLDQLPAALLCTIITKLD-VASISSVAATCSTFRACAA 46 (641)
Q Consensus 10 ~~~~LP~e~l~~I~~~L~-~~d~~~~~~vcr~w~~~~~ 46 (641)
.|..||.|++..|.++|+ ..|+.+++.|||.||.++.
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 488999999999999996 8899999999999999984
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.89 E-value=0.049 Score=29.83 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=9.3
Q ss_pred CCCCEEeccCCCCCCHHHHHHH
Q 006538 495 VPISELRVRQCPLIGDTSVIAL 516 (641)
Q Consensus 495 ~~L~~L~l~~~~~l~~~~~~~l 516 (641)
++|++|+|++| .|++.++..+
T Consensus 2 ~~L~~L~l~~n-~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNN-QITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSS-BEHHHHHHHH
T ss_pred CCCCEEEccCC-cCCHHHHHHh
Confidence 44555555555 3555554444
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.76 E-value=0.067 Score=29.28 Aligned_cols=21 Identities=43% Similarity=0.613 Sum_probs=9.8
Q ss_pred CCCcEEEccCCcCChHHHHHH
Q 006538 415 PQLKILLLDGSDISDVGVSYL 435 (641)
Q Consensus 415 ~~L~~L~l~~~~l~~~~~~~l 435 (641)
++|+.|+|++|.+++.++..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 445555555555555555444
No 76
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.51 E-value=0.027 Score=46.06 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=18.0
Q ss_pred cCCCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCcC
Q 006538 388 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDI 427 (641)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 427 (641)
..+.++.|++.++ .+++...+ ++.++.|+.|++..|.+
T Consensus 75 kf~t~t~lNl~~n-eisdvPeE-~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 75 KFPTATTLNLANN-EISDVPEE-LAAMPALRSLNLRFNPL 112 (177)
T ss_pred ccchhhhhhcchh-hhhhchHH-HhhhHHhhhcccccCcc
Confidence 3444455555544 44443333 44555555555555544
No 77
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=93.45 E-value=0.047 Score=51.07 Aligned_cols=37 Identities=32% Similarity=0.599 Sum_probs=32.8
Q ss_pred CccccchHHHHHHHHh-----hcccchhhhHhhhcccHHHHH
Q 006538 9 KSLDQLPAALLCTIIT-----KLDVASISSVAATCSTFRACA 45 (641)
Q Consensus 9 ~~~~~LP~e~l~~I~~-----~L~~~d~~~~~~vcr~w~~~~ 45 (641)
.+|..||+||+..||. .++..++.++++|||.|+..+
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~ 146 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCA 146 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHH
Confidence 5678999999999997 456788999999999999988
No 78
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=92.93 E-value=0.0092 Score=60.45 Aligned_cols=152 Identities=17% Similarity=0.231 Sum_probs=64.5
Q ss_pred hcCCCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCcCChHHHHHHHHhcCCCccEEecCCCCCCC-HHHHHHHhcc
Q 006538 387 ASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-DKCISALFDG 465 (641)
Q Consensus 387 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~-~~~~~~l~~~ 465 (641)
.++..|+.|+++.+ .++.... .+..+ -|+.|.+++|+++..... +. ..+.|..|+.+.|.-.+ +..+..+
T Consensus 118 ~~L~~lt~l~ls~N-qlS~lp~-~lC~l-pLkvli~sNNkl~~lp~~-ig--~~~tl~~ld~s~nei~slpsql~~l--- 188 (722)
T KOG0532|consen 118 CNLEALTFLDLSSN-QLSHLPD-GLCDL-PLKVLIVSNNKLTSLPEE-IG--LLPTLAHLDVSKNEIQSLPSQLGYL--- 188 (722)
T ss_pred hhhhHHHHhhhccc-hhhcCCh-hhhcC-cceeEEEecCccccCCcc-cc--cchhHHHhhhhhhhhhhchHHhhhH---
Confidence 35556666666665 3322211 12222 256666666654321111 11 13455555555544222 2222223
Q ss_pred CCCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhccccCcccCCCCccEEeccCCCCCCHH
Q 006538 466 TSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL 545 (641)
Q Consensus 466 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~ 545 (641)
.+|+.|.+.. +++.+-.-. ++ +-.|..|+++.| +|....+.. . ..+.|++|-|.+|+ +++.
T Consensus 189 ---~slr~l~vrR-n~l~~lp~E-l~--~LpLi~lDfScN-kis~iPv~f-r---------~m~~Lq~l~LenNP-LqSP 249 (722)
T KOG0532|consen 189 ---TSLRDLNVRR-NHLEDLPEE-LC--SLPLIRLDFSCN-KISYLPVDF-R---------KMRHLQVLQLENNP-LQSP 249 (722)
T ss_pred ---HHHHHHHHhh-hhhhhCCHH-Hh--CCceeeeecccC-ceeecchhh-h---------hhhhheeeeeccCC-CCCC
Confidence 4555555555 333221111 11 224666666665 344333221 1 33456666666665 3333
Q ss_pred HHHHhhCCCCCCceEEEecCC
Q 006538 546 AFRWLKKPYFPRLRWLGVTGS 566 (641)
Q Consensus 546 ~~~~l~~~~~~~L~~L~l~~~ 566 (641)
......++...=.++|+..-|
T Consensus 250 PAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 250 PAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hHHHHhccceeeeeeecchhc
Confidence 332222222333455555554
No 79
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.62 E-value=0.028 Score=57.92 Aligned_cols=124 Identities=27% Similarity=0.326 Sum_probs=81.9
Q ss_pred CCCCEEEcccCCCCCHHHHHHhhcCCCCCEEecCCCCCCChhhhHh-hhCCCCCcEEEccCCcCChHHHHHHHHhcCCCc
Q 006538 365 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRA-ISSLPQLKILLLDGSDISDVGVSYLRLTVITSL 443 (641)
Q Consensus 365 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L 443 (641)
..++.+.+.. +.+.. ....+..+++|+.|++.++ .+.. +.. +..+++|+.|++++|.|+. +..+.. ++.|
T Consensus 72 ~~l~~l~l~~-n~i~~-~~~~l~~~~~l~~l~l~~n-~i~~--i~~~l~~~~~L~~L~ls~N~I~~--i~~l~~--l~~L 142 (414)
T KOG0531|consen 72 TSLKELNLRQ-NLIAK-ILNHLSKLKSLEALDLYDN-KIEK--IENLLSSLVNLQVLDLSFNKITK--LEGLST--LTLL 142 (414)
T ss_pred HhHHhhccch-hhhhh-hhcccccccceeeeecccc-chhh--cccchhhhhcchheecccccccc--ccchhh--ccch
Confidence 3555555544 23322 1223567889999999987 4443 233 6678999999999998865 334444 6779
Q ss_pred cEEecCCCCCCC-HHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 006538 444 VKLSLRGCKRLT-DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP 506 (641)
Q Consensus 444 ~~L~l~~c~~l~-~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 506 (641)
+.|++.++. ++ -.++..+ +.|+.+++++ +.+.+..-.. ...+.+|+.+.+.+|.
T Consensus 143 ~~L~l~~N~-i~~~~~~~~l------~~L~~l~l~~-n~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 143 KELNLSGNL-ISDISGLESL------KSLKLLDLSY-NRIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred hhheeccCc-chhccCCccc------hhhhcccCCc-chhhhhhhhh-hhhccchHHHhccCCc
Confidence 999999865 43 2333333 8899999998 5665433311 2378899999999995
No 80
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=92.59 E-value=0.067 Score=50.42 Aligned_cols=38 Identities=18% Similarity=0.403 Sum_probs=35.6
Q ss_pred Cccccch----HHHHHHHHhhcccchhhhHhhhcccHHHHHH
Q 006538 9 KSLDQLP----AALLCTIITKLDVASISSVAATCSTFRACAA 46 (641)
Q Consensus 9 ~~~~~LP----~e~l~~I~~~L~~~d~~~~~~vcr~w~~~~~ 46 (641)
+.+..|| +++.+.||+||+..++..+-.|||+|+.+..
T Consensus 73 DFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~ 114 (499)
T KOG0281|consen 73 DFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLS 114 (499)
T ss_pred HHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhc
Confidence 5688899 9999999999999999999999999999983
No 81
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.27 E-value=0.042 Score=56.64 Aligned_cols=121 Identities=30% Similarity=0.312 Sum_probs=80.5
Q ss_pred cCCCCCEEEcccCCCCCHHHHHH-hhcCCCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCcCChHHHHHHHHhcCC
Q 006538 363 TSLSLTHVCLRWCNLLTNHAIKS-LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVIT 441 (641)
Q Consensus 363 ~~~~L~~L~l~~~~~l~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~ 441 (641)
.+.+|+.|++.. +.+... .. +..+++|++|+++++ .++. +..+..++.|+.|++.+|.+.... .+. .++
T Consensus 93 ~~~~l~~l~l~~-n~i~~i--~~~l~~~~~L~~L~ls~N-~I~~--i~~l~~l~~L~~L~l~~N~i~~~~--~~~--~l~ 162 (414)
T KOG0531|consen 93 KLKSLEALDLYD-NKIEKI--ENLLSSLVNLQVLDLSFN-KITK--LEGLSTLTLLKELNLSGNLISDIS--GLE--SLK 162 (414)
T ss_pred cccceeeeeccc-cchhhc--ccchhhhhcchheecccc-cccc--ccchhhccchhhheeccCcchhcc--CCc--cch
Confidence 456888888887 555432 23 567999999999998 6655 345566777999999999876532 222 277
Q ss_pred CccEEecCCCCCCCHHHH---HHHhccCCCCCccEEecCCCCCCCH-HHHHHHHhcCCCCCEEeccCC
Q 006538 442 SLVKLSLRGCKRLTDKCI---SALFDGTSKLQLQELDLSNLPHLSD-NGILTLATCRVPISELRVRQC 505 (641)
Q Consensus 442 ~L~~L~l~~c~~l~~~~~---~~l~~~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~L~~L~l~~~ 505 (641)
.|+.++++++. +++... ..+ .+|+.+++.+ +.+.. .++. .+..+..+.+..|
T Consensus 163 ~L~~l~l~~n~-i~~ie~~~~~~~------~~l~~l~l~~-n~i~~i~~~~----~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 163 SLKLLDLSYNR-IVDIENDELSEL------ISLEELDLGG-NSIREIEGLD----LLKKLVLLSLLDN 218 (414)
T ss_pred hhhcccCCcch-hhhhhhhhhhhc------cchHHHhccC-CchhcccchH----HHHHHHHhhcccc
Confidence 89999999865 443322 333 8999999998 55553 2333 2233444466555
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=90.50 E-value=0.39 Score=27.43 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=9.6
Q ss_pred CCCEEeccCCCCCCHHHHHHHH
Q 006538 496 PISELRVRQCPLIGDTSVIALA 517 (641)
Q Consensus 496 ~L~~L~l~~~~~l~~~~~~~l~ 517 (641)
+|++|+|++| .+++.|...++
T Consensus 3 ~L~~LdL~~N-~i~~~G~~~L~ 23 (28)
T smart00368 3 SLRELDLSNN-KLGDEGARALA 23 (28)
T ss_pred ccCEEECCCC-CCCHHHHHHHH
Confidence 3444444444 34444444444
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=88.93 E-value=0.7 Score=26.38 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=16.8
Q ss_pred CCCcEEEccCCcCChHHHHHHHH
Q 006538 415 PQLKILLLDGSDISDVGVSYLRL 437 (641)
Q Consensus 415 ~~L~~L~l~~~~l~~~~~~~l~~ 437 (641)
++|++|+|++|.+.+.+...++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 46777777777777777776665
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=84.19 E-value=2.3 Score=43.69 Aligned_cols=86 Identities=17% Similarity=0.096 Sum_probs=42.0
Q ss_pred HhcCCCCCEEeccCCCCCCHHHHHHHHhccccCcccCCCCccEEeccCCCC-C-CHHHHHHhhCCCCCCceEEEecCCC-
Q 006538 491 ATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGG-I-TQLAFRWLKKPYFPRLRWLGVTGSV- 567 (641)
Q Consensus 491 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~-~-~~~~~~~l~~~~~~~L~~L~l~~~~- 567 (641)
....|.+..+.|++|....-.++..++. ..|+|++|+|+++.+ + +...+..+ ..+.|++|-+.||+
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq--------~apklk~L~LS~N~~~~~~~~el~K~---k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQ--------IAPKLKTLDLSHNHSKISSESELDKL---KGLPLEELVLEGNPL 282 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHH--------hcchhheeecccchhhhcchhhhhhh---cCCCHHHeeecCCcc
Confidence 3355566666666663222223344444 456666666666521 1 11112222 23456666666664
Q ss_pred ------CHHHHHHHHhhCCCeEEecC
Q 006538 568 ------NRDILDALARSRPFLNVACR 587 (641)
Q Consensus 568 ------~~~~~~~~~~~~~~l~~~~~ 587 (641)
..+-+..+.+.+|++....+
T Consensus 283 c~tf~~~s~yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 283 CTTFSDRSEYVSAIRELFPKLLRLDG 308 (585)
T ss_pred ccchhhhHHHHHHHHHhcchheeecC
Confidence 13344556667777666543
No 85
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=84.09 E-value=0.12 Score=43.08 Aligned_cols=35 Identities=11% Similarity=0.195 Sum_probs=12.4
Q ss_pred cCCCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccC
Q 006538 388 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDG 424 (641)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 424 (641)
.+++|+.+.+.. .+...+-..+..+++|+.+.+.+
T Consensus 10 ~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 10 NCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp T-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS
T ss_pred CCCCCCEEEECC--CeeEeChhhcccccccccccccc
Confidence 444555555542 23333333444455555555544
No 86
>PF13013 F-box-like_2: F-box-like domain
Probab=81.85 E-value=1.6 Score=34.74 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=27.3
Q ss_pred ccccchHHHHHHHHhhcccchhhhHhhhcc
Q 006538 10 SLDQLPAALLCTIITKLDVASISSVAATCS 39 (641)
Q Consensus 10 ~~~~LP~e~l~~I~~~L~~~d~~~~~~vcr 39 (641)
.+.+||.|++..||.+-+..++..+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 488899999999999999999988888887
No 87
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=81.50 E-value=0.34 Score=40.33 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=22.2
Q ss_pred CCCCCEEEcccCCCCCHHHHHHhhcCCCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccC
Q 006538 364 SLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDG 424 (641)
Q Consensus 364 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 424 (641)
+.+|+.+.+.. .+...+...+..+++|+.+.+.+ .+...+-..+..+++|+.+.+.+
T Consensus 11 ~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 11 CSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp -TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS
T ss_pred CCCCCEEEECC--CeeEeChhhcccccccccccccc--cccccceeeeecccccccccccc
Confidence 33455555442 22222223344555666666654 24444444455555566666643
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=79.44 E-value=2.4 Score=43.63 Aligned_cols=65 Identities=26% Similarity=0.345 Sum_probs=31.8
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEecCCCC-CCC-HHHHHHHHhcCCCCCEEeccCCCC
Q 006538 439 VITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLP-HLS-DNGILTLATCRVPISELRVRQCPL 507 (641)
Q Consensus 439 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~~L~~L~l~~~~-~l~-~~~~~~l~~~~~~L~~L~l~~~~~ 507 (641)
..|.+..++|+++.-..-+.+..++... |+|++|+|+++. .+. ...+..+ ....|++|.+.|||.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~a--pklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIA--PKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPL 282 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhc--chhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCcc
Confidence 4555556666554322334444444444 666666666620 222 1122211 234567777777763
No 89
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=77.79 E-value=0.68 Score=48.89 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=39.2
Q ss_pred CccccchHHHHHHHHhhcccchhhhHhhhcccHHHHHHHHhccc
Q 006538 9 KSLDQLPAALLCTIITKLDVASISSVAATCSTFRACAAQILSFL 52 (641)
Q Consensus 9 ~~~~~LP~e~l~~I~~~L~~~d~~~~~~vcr~w~~~~~~~~~~l 52 (641)
+.+..||.|+..+||.||+.+++..+++||+.|+.++.......
T Consensus 106 dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 106 DFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred chhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 77889999999999999999999999999999999996544444
No 90
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=77.69 E-value=1.7 Score=21.39 Aligned_cols=8 Identities=25% Similarity=0.331 Sum_probs=2.9
Q ss_pred cEEEccCC
Q 006538 418 KILLLDGS 425 (641)
Q Consensus 418 ~~L~l~~~ 425 (641)
+.|++++|
T Consensus 4 ~~L~l~~n 11 (17)
T PF13504_consen 4 RTLDLSNN 11 (17)
T ss_dssp SEEEETSS
T ss_pred CEEECCCC
Confidence 33333333
No 91
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=77.09 E-value=0.16 Score=51.86 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=25.7
Q ss_pred CCCccEEEeeccCCCHHHHHHHHhcCCCCcEEecCCCCC
Q 006538 220 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPL 258 (641)
Q Consensus 220 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 258 (641)
.-.|.+|++++|.+.. +..-+..++.|++|.|.+|+.
T Consensus 210 ~LpLi~lDfScNkis~--iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 210 SLPLIRLDFSCNKISY--LPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred CCceeeeecccCceee--cchhhhhhhhheeeeeccCCC
Confidence 3457888888887764 333335688888888888763
No 92
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=74.21 E-value=2.1 Score=33.53 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=23.3
Q ss_pred CccccchHHHHHHHHhhcccchhhhH
Q 006538 9 KSLDQLPAALLCTIITKLDVASISSV 34 (641)
Q Consensus 9 ~~~~~LP~e~l~~I~~~L~~~d~~~~ 34 (641)
..|..||.|+...|+++|+-.|+..+
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHHH
Confidence 67999999999999999999998654
No 93
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=64.74 E-value=2.5 Score=22.42 Aligned_cols=9 Identities=33% Similarity=0.508 Sum_probs=4.7
Q ss_pred CCEEecCCC
Q 006538 392 IKVLDLRDC 400 (641)
Q Consensus 392 L~~L~l~~~ 400 (641)
|++|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 455555555
No 94
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=63.13 E-value=15 Score=35.44 Aligned_cols=81 Identities=17% Similarity=0.265 Sum_probs=50.4
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHhcc-CCCCCccEEecCCCCCCC---HHHHHHHHhcCCCCCEEeccCCCCCCHHHHH
Q 006538 439 VITSLVKLSLRGCKRLTDKCISALFDG-TSKLQLQELDLSNLPHLS---DNGILTLATCRVPISELRVRQCPLIGDTSVI 514 (641)
Q Consensus 439 ~~~~L~~L~l~~c~~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~l~---~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~ 514 (641)
.-+.++..+|.+..+|+...+..+..+ +.....+...+.+ ...+ ..++..+.+.+..|++|++.+| .|+..|+-
T Consensus 196 nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~-tr~~d~vA~a~a~ml~~n~sl~slnvesn-FItg~gi~ 273 (353)
T KOG3735|consen 196 NDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLAN-TRSSDPVAFAIAEMLKENKSLTSLNVESN-FITGLGIM 273 (353)
T ss_pred CCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhc-ccCCchhHHHHHHHHhhcchhhheecccc-ccccHHHH
Confidence 556777777777666766666555544 2234555555555 2333 2344445566778888888888 68888877
Q ss_pred HHHhccc
Q 006538 515 ALASMLV 521 (641)
Q Consensus 515 ~l~~~~~ 521 (641)
++..++.
T Consensus 274 a~~~al~ 280 (353)
T KOG3735|consen 274 ALLRALQ 280 (353)
T ss_pred HHHHHHh
Confidence 7665443
No 95
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=54.88 E-value=4 Score=30.12 Aligned_cols=6 Identities=50% Similarity=0.761 Sum_probs=0.0
Q ss_pred hccCCC
Q 006538 635 INAEPM 640 (641)
Q Consensus 635 ~~~~~~ 640 (641)
++++.|
T Consensus 48 eeee~m 53 (81)
T PF14812_consen 48 EEEEPM 53 (81)
T ss_dssp ------
T ss_pred hhcccc
Confidence 344443
No 96
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=51.29 E-value=5.7 Score=43.18 Aligned_cols=11 Identities=18% Similarity=0.199 Sum_probs=4.7
Q ss_pred HhhhcccHHHH
Q 006538 34 VAATCSTFRAC 44 (641)
Q Consensus 34 ~~~vcr~w~~~ 44 (641)
+....+-|+.+
T Consensus 609 l~~~~~~w~~~ 619 (1516)
T KOG1832|consen 609 LCQTPPVWRYL 619 (1516)
T ss_pred HHhcCcccccc
Confidence 33344444444
No 97
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=46.97 E-value=19 Score=19.75 Aligned_cols=10 Identities=30% Similarity=0.564 Sum_probs=4.5
Q ss_pred CCCEEecCCC
Q 006538 391 GIKVLDLRDC 400 (641)
Q Consensus 391 ~L~~L~l~~~ 400 (641)
+|+.|++++|
T Consensus 3 ~L~~L~L~~N 12 (26)
T smart00370 3 NLRELDLSNN 12 (26)
T ss_pred CCCEEECCCC
Confidence 3444444444
No 98
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=46.97 E-value=19 Score=19.75 Aligned_cols=10 Identities=30% Similarity=0.564 Sum_probs=4.5
Q ss_pred CCCEEecCCC
Q 006538 391 GIKVLDLRDC 400 (641)
Q Consensus 391 ~L~~L~l~~~ 400 (641)
+|+.|++++|
T Consensus 3 ~L~~L~L~~N 12 (26)
T smart00369 3 NLRELDLSNN 12 (26)
T ss_pred CCCEEECCCC
Confidence 3444444444
No 99
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=46.28 E-value=15 Score=20.51 Aligned_cols=8 Identities=38% Similarity=0.634 Sum_probs=3.5
Q ss_pred ccEEecCC
Q 006538 471 LQELDLSN 478 (641)
Q Consensus 471 L~~L~l~~ 478 (641)
|++|.|..
T Consensus 2 LKtL~L~~ 9 (26)
T PF07723_consen 2 LKTLHLDS 9 (26)
T ss_pred CeEEEeeE
Confidence 44444444
No 100
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=38.61 E-value=75 Score=30.98 Aligned_cols=88 Identities=17% Similarity=0.229 Sum_probs=59.7
Q ss_pred HHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCC---CCCEEeccCCCCCCHHHHHHHHhccccCcccCCCCcc
Q 006538 456 DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRV---PISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIR 532 (641)
Q Consensus 456 ~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~---~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~ 532 (641)
+..+..+-..- +.++.+++.+...|....+..+...+. ..+...+.+- ...+....+++.++. .++.|+
T Consensus 187 e~~leri~~nd--~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~t-r~~d~vA~a~a~ml~-----~n~sl~ 258 (353)
T KOG3735|consen 187 ESSLERIKEND--TGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANT-RSSDPVAFAIAEMLK-----ENKSLT 258 (353)
T ss_pred HHHHHHHhcCC--CCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcc-cCCchhHHHHHHHHh-----hcchhh
Confidence 45555554434 899999999877888776666655553 3444444443 445555555555555 789999
Q ss_pred EEeccCCCCCCHHHHHHhhC
Q 006538 533 LLDLYNCGGITQLAFRWLKK 552 (641)
Q Consensus 533 ~L~l~~c~~~~~~~~~~l~~ 552 (641)
+|++.++. ||..++.++..
T Consensus 259 slnvesnF-Itg~gi~a~~~ 277 (353)
T KOG3735|consen 259 SLNVESNF-ITGLGIMALLR 277 (353)
T ss_pred heeccccc-cccHHHHHHHH
Confidence 99999987 99988777755
No 101
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=37.64 E-value=30 Score=19.33 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=6.3
Q ss_pred CCCCEEeccCC
Q 006538 495 VPISELRVRQC 505 (641)
Q Consensus 495 ~~L~~L~l~~~ 505 (641)
++|+.|++++|
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00365 2 TNLEELDLSQN 12 (26)
T ss_pred CccCEEECCCC
Confidence 45556666555
No 102
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=35.14 E-value=30 Score=35.24 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=7.5
Q ss_pred CCCCccEEeccCCC
Q 006538 527 YGSSIRLLDLYNCG 540 (641)
Q Consensus 527 ~~~~L~~L~l~~c~ 540 (641)
..+.++.|+++++.
T Consensus 438 stqtl~kldisgn~ 451 (553)
T KOG4242|consen 438 STQTLAKLDISGNG 451 (553)
T ss_pred cCcccccccccCCC
Confidence 34555556665554
No 103
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=30.91 E-value=57 Score=30.49 Aligned_cols=39 Identities=23% Similarity=0.384 Sum_probs=31.9
Q ss_pred CCCccccchHHHHHHHHhhcc-cchhhhHhhhcccHHHHH
Q 006538 7 SGKSLDQLPAALLCTIITKLD-VASISSVAATCSTFRACA 45 (641)
Q Consensus 7 ~~~~~~~LP~e~l~~I~~~L~-~~d~~~~~~vcr~w~~~~ 45 (641)
.+..+.+||.|++..|+..|+ -.|+.+++.|-.....++
T Consensus 198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~ 237 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLS 237 (332)
T ss_pred CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHH
Confidence 457899999999999999997 789988888765554444
No 104
>PHA02608 67 prohead core protein; Provisional
Probab=26.92 E-value=45 Score=24.21 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=7.2
Q ss_pred HHhcCCCCCCCh
Q 006538 616 WLMEGEDESDND 627 (641)
Q Consensus 616 ~~~~~~~~~~~~ 627 (641)
++.+|++.++++
T Consensus 43 v~iEGEe~ed~d 54 (80)
T PHA02608 43 VMIEGEEPEDDD 54 (80)
T ss_pred HhhcCCCCcccc
Confidence 566777665443
Done!