Query 006538
Match_columns 641
No_of_seqs 341 out of 4034
Neff 10.8
Searched_HMMs 29240
Date Tue Mar 26 19:07:33 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006538.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2163-2167//hhsearch_pdb/006538hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 1.0 1 1 324.7 42.9 497 7-589 2-540 (594)
2 3ogk_B Coronatine-insensitive 1.0 1 1 314.4 30.1 486 11-585 13-543 (592)
3 2p1m_B Transport inhibitor res 1.0 1 1 250.9 34.7 441 47-568 63-543 (594)
4 3ogk_B Coronatine-insensitive 1.0 1 1 246.5 30.2 443 47-566 70-548 (592)
5 3rgz_A Protein brassinosteroid 1.0 1 1 237.3 -13.1 72 37-109 38-137 (768)
6 3rgz_A Protein brassinosteroid 1.0 1 1 229.2 -6.9 111 336-452 439-549 (768)
7 1z7x_W Ribonuclease inhibitor; 1.0 1 1 219.7 40.4 412 75-585 3-460 (461)
8 3t6q_A CD180 antigen; protein- 1.0 1 1 219.5 -4.1 106 49-164 32-138 (606)
9 3t6q_A CD180 antigen; protein- 1.0 1 1 219.1 1.1 107 49-165 56-163 (606)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 213.9 -0.1 458 49-566 31-531 (606)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=1.00 E-value=1 Score=324.75 Aligned_cols=497 Identities=17% Similarity=0.193 Sum_probs=359.4
Q ss_pred CCCCCCCCHHHHHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 787634514999999996105-1001458640401899999985001223346888894434012899999507996338
Q 006538 7 SGKSLDQLPAALLCTIITKLD-VASISSVAATCSTFRACAAQILSFLTSFHLLDIALSTEIIKPLLPPNPYLRSLKVDCG 85 (641)
Q Consensus 7 ~~~~~~~LP~ei~~~I~~~L~-~~d~~~~~~vcr~w~~~~~~~~~~l~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 85 (641)
+.+.|+.||+|++.+||+||+ .+|+.+++.|||+|+++. ...++.++++.+.... ...++..+++++.|+++++
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~---~~~~~~l~~~~~~~~~--~~~~~~~~~~L~~L~L~~~ 76 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIE---RWCRRKVFIGNCYAVS--PATVIRRFPKVRSVELKGK 76 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHH---HHHCCEEEESSTTSSC--HHHHHHHCTTCCEEEEECS
T ss_pred CCCCHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHCEEEEECCCCCCC--HHHHHHHCCCCEEEECCCC
T ss_conf 6525434999999999855698235899999998998755---6441087611333468--7999862887529961488
Q ss_pred C-CCHHH-------------HHHHH--CCCCCEECCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 9-99389-------------98321--15536030467888617999999721988766754665322586444443999
Q 006538 86 K-LDDSA-------------IELML--RPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEE 149 (641)
Q Consensus 86 ~-~~~~~-------------~~~~~--~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 149 (641)
. +.+.. +..+. .++|++|++.++. +++..+..+.+.|++|++|++.+| ..++..++..
T Consensus 77 ~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~-----~~~~~~~l~~ 150 (594)
T 2p1m_B 77 PHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSC-----EGFSTDGLAA 150 (594)
T ss_dssp CGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESC-----EEEEHHHHHH
T ss_pred CCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCE-ECHHHHHHHHHHCCCCCEEECCCC-----CCCCHHHHHH
T ss_conf 7321025433332110058999999768887759755857-759999999984999868768896-----9978789999
Q ss_pred HHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 98239843413124332322311369987641377796762465757675222999889999987689978886188842
Q 006538 150 LLNGCPQLEALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLS 229 (641)
Q Consensus 150 ~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 229 (641)
+...+++|++|++..+. +...... .+..+ ...+++|++|+++
T Consensus 151 ~~~~~~~L~~L~L~~~~--i~~~~~~---------------------~l~~~---------------~~~~~~L~~L~l~ 192 (594)
T 2p1m_B 151 IAATCRNLKELDLRESD--VDDVSGH---------------------WLSHF---------------PDTYTSLVSLNIS 192 (594)
T ss_dssp HHHHCTTCCEEECTTCE--EECCCGG---------------------GGGGS---------------CTTCCCCCEEECT
T ss_pred HHHHCCCCCEEECCCCC--CCCCCHH---------------------HHHHH---------------HHCCCCCCEEEEC
T ss_conf 99768998889575875--6775157---------------------99987---------------5029967488700
Q ss_pred CCC--CCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCHHH---
Q ss_conf 157--897899999942999748845899987885445555477786323999738981022111112342248368---
Q 006538 230 VDY--ITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLG--- 304 (641)
Q Consensus 230 ~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--- 304 (641)
.+. ++...+..+...+++|++|++++|. .++. ....+..+++|+.|.+..+. ..+....
T Consensus 193 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~--------~~~~-l~~~~~~~~~L~~L~l~~~~-------~~~~~~~~~~ 256 (594)
T 2p1m_B 193 CLASEVSFSALERLVTRCPNLKSLKLNRAV--------PLEK-LATLLQRAPQLEELGTGGYT-------AEVRPDVYSG 256 (594)
T ss_dssp TCCSCCCHHHHHHHHHHCTTCCEEECCTTS--------CHHH-HHHHHHHCTTCSEEECSBCC-------CCCCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHCCCCCEEECCCCC--------CHHH-HHHHHHCCCCCEECCCCCCC-------CCCCHHHHHH
T ss_conf 667867889999999749978488667877--------6777-99998639865571454344-------7666366889
Q ss_pred HHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHH
Q ss_conf 99999709986489945977789889999998399952998158899999999999841999978981568888788999
Q 006538 305 ILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIK 384 (641)
Q Consensus 305 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 384 (641)
+......+++|+.|. +........+..+...+++|++|++++|. +++..+..+...+++|++|++.+| +++.++.
T Consensus 257 l~~~l~~~~~L~~Ls--~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~ 331 (594)
T 2p1m_B 257 LSVALSGCKELRCLS--GFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLE 331 (594)
T ss_dssp HHHHHHTCTTCCEEE--CCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHH
T ss_pred HHHHHHCCCCCCCCC--CCCCCCHHHHHHHHHHHCCCCEEECCCCC-CCHHHHHHHHHCCCCCCEEECCCC--CCHHHHH
T ss_conf 999985499763035--87656655678888764789989732887-887999999960987689958676--3788999
Q ss_pred HHH-CCCCCCEEEC--------CCCCCCCHHHHHHHH-CCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCEEECC-----
Q ss_conf 802-6999899946--------899888926657530-8989759983687678699999998518886488457-----
Q 006538 385 SLA-SNTGIKVLDL--------RDCKNLGDEALRAIS-SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLR----- 449 (641)
Q Consensus 385 ~l~-~~~~L~~L~l--------~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L~l~----- 449 (641)
.+. .+++|+.|++ ..|..+++.++..+. .+++|+.|.+..+.+++.++..+.. .+++|+.|+++
T Consensus 332 ~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~-~~~~L~~L~L~~~~~~ 410 (594)
T 2p1m_B 332 VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIAR-NRPNMTRFRLCIIEPK 410 (594)
T ss_dssp HHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHH-HCTTCCEEEEEESSTT
T ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHH-HCCCCCEEEEECCCCC
T ss_conf 999868788889972476544334788788899999870631799997657768999999986-0888652476234677
Q ss_pred CCCCCC----HHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 888888----7899997414898980289369999999788999981699987883169998798999999802345766
Q 006538 450 GCKRLT----DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDR 525 (641)
Q Consensus 450 ~c~~l~----~~~~~~l~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~ 525 (641)
+|..++ +.++..+...+ ++|+.|++++ .+++.++..+...+++|+.|++++| .+++.++..+..
T Consensus 411 ~~~~l~~~~~~~~~~~l~~~~--~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~------- 478 (594)
T 2p1m_B 411 APDYLTLEPLDIGFGAIVEHC--KDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLS------- 478 (594)
T ss_dssp CCCTTTCCCTHHHHHHHHHHC--TTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHH-------
T ss_pred CCCCCCCCCHHHHHHHHHHHC--CCCCEEEECC--CCCHHHHHHHHHHCHHCCEEECCCC-CCCHHHHHHHHH-------
T ss_conf 746456772354899999558--9866795067--4168999999975311618654479-984899999985-------
Q ss_pred CCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCCEEEEECCCC-CHHHHHHHHHHCCCEEEECCCC
Q ss_conf 679986489526899999999999638799982099820778-9889999995199808702782
Q 006538 526 WYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV-NRDILDALARSRPFLNVACRGE 589 (641)
Q Consensus 526 ~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~~~~~~ 589 (641)
.+++|+.|++++|. +++.++..+.. .+++|+.|++++|. ..+.++.+....|.+++.....
T Consensus 479 -~~~~L~~L~L~~n~-~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 479 -GCDSLRKLEIRDCP-FGDKALLANAS-KLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp -HCTTCCEEEEESCS-CCHHHHHHTGG-GGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECS
T ss_pred -CCCCCCEEECCCCC-CCHHHHHHHHH-HCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECC
T ss_conf -49986878886998-73999999997-5888778961478797999999997699977998358
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=1.00 E-value=1 Score=314.37 Aligned_cols=486 Identities=15% Similarity=0.163 Sum_probs=232.7
Q ss_pred CCCCHHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEECCC---
Q ss_conf 3451499999999610-510014586404018999999850012233468888944340128999995079963389---
Q 006538 11 LDQLPAALLCTIITKL-DVASISSVAATCSTFRACAAQILSFLTSFHLLDIALSTEIIKPLLPPNPYLRSLKVDCGK--- 86 (641)
Q Consensus 11 ~~~LP~ei~~~I~~~L-~~~d~~~~~~vcr~w~~~~~~~~~~l~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~--- 86 (641)
...||+|++.+||+|| +.+|+.+++.|||+|+.+...... .+.+..+.- .....++..++++++|+++++.
T Consensus 13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~---~l~~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~ 87 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETRE---HVTMALCYT--ATPDRLSRRFPNLRSLKLKGKPRAA 87 (592)
T ss_dssp CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCC---EEEESCGGG--SCHHHHHHHCTTCSEEEEECSCGGG
T ss_pred CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC---EEEEEECCC--CCHHHHHHHCCCCEEEEECCCCCHH
T ss_conf 57899999999997659988999999873899985531156---788762254--6869999768997289824875332
Q ss_pred -----------CCHHHHHHHH--CCCCCEECCCCCCCCCHHHHHHHHHCCCC-CCEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf -----------9938998321--15536030467888617999999721988-766754665322586444443999982
Q 006538 87 -----------LDDSAIELML--RPTLHELCLHNCADFSGKLLSEIGGKCKD-LRSLYLGSVAEKRGRSIHISDLEELLN 152 (641)
Q Consensus 87 -----------~~~~~~~~~~--~~~L~~L~L~~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~l~~~~~ 152 (641)
.....+..+. .++|++|+++++. +++..+..+...+++ |++|++++|. .+...++..+..
T Consensus 88 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~-----~~~~~~l~~~~~ 161 (592)
T 3ogk_B 88 MFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCS-----GFTTDGLLSIVT 161 (592)
T ss_dssp GGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCE-----EEEHHHHHHHHH
T ss_pred HCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCE-ECHHHHHHHHHHCCCCCCEEECCCCC-----CCCHHHHHHHHH
T ss_conf 205556443342328999999648898869711317-66999999997420267699786789-----968789999996
Q ss_pred CCCCCCEEECCCCCCCCCCHH---HHHHHHHHCCCCCEEECCCCC-----HHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 398434131243323223113---699876413777967624657-----576752229998899999876899788861
Q 006538 153 GCPQLEALILMFDISLFLRHN---FARVWALASEKLTSLEIGYIS-----SVMVTELLSPNVEPHQSPNQIRPSILPGIQ 224 (641)
Q Consensus 153 ~~~~L~~L~L~~~~~~~~~~~---~~~l~~~~~~~L~~L~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 224 (641)
.|++|+.|++.++. +.+.+ +..+ ....++|++|++.... ...+..+ ...+++|+
T Consensus 162 ~~~~L~~L~L~~~~--~~~~~~~~l~~~-~~~~~~L~~L~L~~n~~~~~~~~~l~~~---------------~~~~~~L~ 223 (592)
T 3ogk_B 162 HCRKIKTLLMEESS--FSEKDGKWLHEL-AQHNTSLEVLNFYMTEFAKISPKDLETI---------------ARNCRSLV 223 (592)
T ss_dssp HCTTCSEEECTTCE--EECCCSHHHHHH-HHHCCCCCEEECTTCCCSSCCHHHHHHH---------------HHHCTTCC
T ss_pred HCCCCCEEECCCCC--CCCCCHHHHHHH-HHCCCCCCEEEEECCCCCCCCHHHHHHH---------------HHHCCCCC
T ss_conf 19997889775552--457530699987-7518874178866057776688999999---------------96199986
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCHHH
Q ss_conf 88842157897899999942999748845899987885445555477786323999738981022111112342248368
Q 006538 225 KLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLG 304 (641)
Q Consensus 225 ~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 304 (641)
.|++..+.+.. +......+++|++|++..+..... ....+..+..+++|+.+.++. .....
T Consensus 224 ~L~L~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~------~~~~~~~l~~~~~L~~L~l~~-----------~~~~~ 284 (592)
T 3ogk_B 224 SVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIG------MPEKYMNLVFPRKLCRLGLSY-----------MGPNE 284 (592)
T ss_dssp EEECSSCBGGG--GHHHHHHCTTCCEEEECBCCCCTT------CTTSSSCCCCCTTCCEEEETT-----------CCTTT
T ss_pred EEECCCCCHHH--HHHHHHHHHHHHHHCCCCCCCCCC------HHHHHHHHHCCCCCCCCCCCC-----------CCHHH
T ss_conf 88656766787--898874346777514341346655------478998763021035468231-----------34667
Q ss_pred HHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCEEECCC----------
Q ss_conf 9999970998648994597778988999999839995299815889999999999984199997898156----------
Q 006538 305 ILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRW---------- 374 (641)
Q Consensus 305 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~---------- 374 (641)
+..+...+++|++|++++|. ++...+..++..+++|+.|++.+ .+.+..+..+...+++|++|++++
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~ 361 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSST
T ss_pred HHHHHHHCCCCCEEECCCCC-CCHHHHHHHHHHCCCCCEEECCC--CCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf 89988643878688247886-77778999997384877786157--6687999999986879998994067655333344
Q ss_pred CCCCCHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCEEECC---CC
Q ss_conf 888878899980269998999468998889266575308989759983687678699999998518886488457---88
Q 006538 375 CNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLR---GC 451 (641)
Q Consensus 375 ~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L~l~---~c 451 (641)
|+.+++.++..+. ..+++|+.|++..+.+++.++..+.. .+++|+.|+++ .|
T Consensus 362 ~~~~~~~~~~~l~------------------------~~~~~L~~L~l~~~~l~~~~~~~l~~-~~~~L~~L~l~~~~~~ 416 (592)
T 3ogk_B 362 EGLVSQRGLIALA------------------------QGCQELEYMAVYVSDITNESLESIGT-YLKNLCDFRLVLLDRE 416 (592)
T ss_dssp TCCCCHHHHHHHH------------------------HHCTTCSEEEEEESCCCHHHHHHHHH-HCCSCCEEEEEECSCC
T ss_pred CCCCCHHHHHHHH------------------------HHCCCCEEEEEECCCCCHHHHHHHHH-HCCCCCEEEEEECCCC
T ss_conf 6853789999998------------------------50835708986568753999999996-2888767998623787
Q ss_pred CCCCH----HHHHHHHCCCCCCCCCEEECCCCC-CCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 88887----899997414898980289369999-9997889999816999878831699987989999998023457666
Q 006538 452 KRLTD----KCISALFDGTSKLQLQELDLSNLP-HLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRW 526 (641)
Q Consensus 452 ~~l~~----~~~~~l~~~~~~~~L~~L~l~~~~-~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~ 526 (641)
+.+++ .++..+..++ ++|+.|+++.|. .+++.++..+...+++|+.|++++| .+++.++..+..
T Consensus 417 n~l~~~p~~~~~~~~~~~~--~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~-------- 485 (592)
T 3ogk_B 417 ERITDLPLDNGVRSLLIGC--KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSR-------- 485 (592)
T ss_dssp SCCSSCCCHHHHHHHHHHC--TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHT--------
T ss_pred CCCCCCHHHHHHHHHHHHC--CCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCC-CCCHHHHHHHHH--------
T ss_conf 6556740889999999739--88788988657898658999999874820227665589-998899999985--------
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHCCCCCCCEEEEECCC-CCHHHHHHHHHHCCCEEEE
Q ss_conf 7998648952689999999999963879998209982077-8988999999519980870
Q 006538 527 YGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGS-VNRDILDALARSRPFLNVA 585 (641)
Q Consensus 527 ~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~~ 585 (641)
.+++|++|++++|. +++.++..+.. .+|+|++|++++| .+...+..+...+|.+.+.
T Consensus 486 ~~~~L~~L~l~~n~-l~~~~~~~~~~-~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~ 543 (592)
T 3ogk_B 486 GCPNLQKLEMRGCC-FSERAIAAAVT-KLPSLRYLWVQGYRASMTGQDLMQMARPYWNIE 543 (592)
T ss_dssp CCTTCCEEEEESCC-CBHHHHHHHHH-HCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEE
T ss_pred CCCCCCEEECCCCC-CCHHHHHHHHH-HCCCCCEEECCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 48636866452898-86799999998-667568467738858889999999869984799
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=1.00 E-value=1 Score=250.90 Aligned_cols=441 Identities=19% Similarity=0.233 Sum_probs=321.0
Q ss_pred HHHCCCCCCCCCCCC-CCH-------------HHHHCCCCCCCCCEEEEEECCCCCHHHHHHHH--CCCCCEECCCCCCC
Q ss_conf 985001223346888-894-------------43401289999950799633899938998321--15536030467888
Q 006538 47 QILSFLTSFHLLDIA-LST-------------EIIKPLLPPNPYLRSLKVDCGKLDDSAIELML--RPTLHELCLHNCAD 110 (641)
Q Consensus 47 ~~~~~l~~l~l~~~~-~~~-------------~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~--~~~L~~L~L~~~~~ 110 (641)
...+.++.++++.+. +.. ..+..+...+++|++|+++++.+++..+..+. .++|++|++.+|..
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred HHCCCCEEEECCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCEECHHHHHHHHHHCCCCCEEECCCCCC
T ss_conf 62887529961488732102543333211005899999976888775975585775999999998499986876889699
Q ss_pred CCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEC
Q ss_conf 61799999972198876675466532258644444399998239843413124332322311369987641377796762
Q 006538 111 FSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFARVWALASEKLTSLEI 190 (641)
Q Consensus 111 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~L~~L~l 190 (641)
++...+..+...|++|++|++++|... ......+..+...+++|+.|++.++...+....+..+..
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~---~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~----------- 208 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESDVD---DVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT----------- 208 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCEEE---CCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH-----------
T ss_pred CCHHHHHHHHHHCCCCCEEECCCCCCC---CCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHH-----------
T ss_conf 787899999976899888957587567---751579998750299674887006678678899999997-----------
Q ss_pred CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCHH
Q ss_conf 46575767522299988999998768997888618884215789789999994299974884589998788544555547
Q 006538 191 GYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNS 270 (641)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 270 (641)
.+++|++|+++.+. ....+..+...+++|++|.+..+.. .+...
T Consensus 209 ----------------------------~~~~L~~L~L~~~~-~~~~l~~~~~~~~~L~~L~l~~~~~-------~~~~~ 252 (594)
T 2p1m_B 209 ----------------------------RCPNLKSLKLNRAV-PLEKLATLLQRAPQLEELGTGGYTA-------EVRPD 252 (594)
T ss_dssp ----------------------------HCTTCCEEECCTTS-CHHHHHHHHHHCTTCSEEECSBCCC-------CCCHH
T ss_pred ----------------------------HCCCCCEEECCCCC-CHHHHHHHHHCCCCCEECCCCCCCC-------CCCHH
T ss_conf ----------------------------49978488667877-6777999986398655714543447-------66636
Q ss_pred ----HHHHHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf ----7786323999738981022111112342248368999997099864899459777898899999983999529981
Q 006538 271 ----GLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRV 346 (641)
Q Consensus 271 ----~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l 346 (641)
....+..+++|+.+.- ........+..+...+++|++|++++|. +++.++..+...+++|+.|.+
T Consensus 253 ~~~~l~~~l~~~~~L~~Ls~----------~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l 321 (594)
T 2p1m_B 253 VYSGLSVALSGCKELRCLSG----------FWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWV 321 (594)
T ss_dssp HHHHHHHHHHTCTTCCEEEC----------CBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEE
T ss_pred HHHHHHHHHHCCCCCCCCCC----------CCCCCHHHHHHHHHHHCCCCEEECCCCC-CCHHHHHHHHHCCCCCCEEEC
T ss_conf 68899999854997630358----------7656655678888764789989732887-887999999960987689958
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCEEEC--------CCCCCCCHHHHHHHH-CCCCCCEEECCCCCCCCHHHHHHHH-CCCC
Q ss_conf 58899999999999841999978981--------568888788999802-6999899946899888926657530-8989
Q 006538 347 SHGTQLTDLVFHDISATSLSLTHVCL--------RWCNLLTNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAIS-SLPQ 416 (641)
Q Consensus 347 ~~~~~l~~~~~~~~~~~~~~L~~L~l--------~~~~~l~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~ 416 (641)
.+| +.+..+..+...+++|++|++ ..|..+++.++..+. .+++|+.|.+.. ..+++.++..+. .+++
T Consensus 322 ~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~-~~l~~~~~~~l~~~~~~ 398 (594)
T 2p1m_B 322 LDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC-RQMTNAALITIARNRPN 398 (594)
T ss_dssp EGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE-SCCCHHHHHHHHHHCTT
T ss_pred CCC--CCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHC-CCCCHHHHHHHHHHCCC
T ss_conf 676--378899999986878888997247654433478878889999987063179999765-77689999999860888
Q ss_pred CCEEECC--C----CCCC----HHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCHHH
Q ss_conf 7599836--8----7678----6999999985188864884578888887899997414898980289369999999788
Q 006538 417 LKILLLD--G----SDIS----DVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNG 486 (641)
Q Consensus 417 L~~L~l~--~----~~l~----~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~i~~~~ 486 (641)
|+.|+++ + +.++ +.++..+.. .+++|+.|++++ .+++.++..+...+ ++|+.|++++| .+++.+
T Consensus 399 L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~-~~~~L~~L~L~~--~l~~~~~~~l~~~~--~~L~~L~L~~~-~i~~~~ 472 (594)
T 2p1m_B 399 MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVE-HCKDLRRLSLSG--LLTDKVFEYIGTYA--KKMEMLSVAFA-GDSDLG 472 (594)
T ss_dssp CCEEEEEESSTTCCCTTTCCCTHHHHHHHHH-HCTTCCEEECCS--SCCHHHHHHHHHHC--TTCCEEEEESC-CSSHHH
T ss_pred CCEEEEECCCCCCCCCCCCCCHHHHHHHHHH-HCCCCCEEEECC--CCCHHHHHHHHHHC--HHCCEEECCCC-CCCHHH
T ss_conf 6524762346777464567723548999995-589866795067--41689999999753--11618654479-984899
Q ss_pred HHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 99998169998788316999879899999980234576667998648952689999999999963879998209982077
Q 006538 487 ILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGS 566 (641)
Q Consensus 487 ~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~~L~~L~l~~~ 566 (641)
+..++..+++|++|++++|+ +++.++..+.. .+++|++|++++|. ++..++..+.. .+|+|+...+...
T Consensus 473 ~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~~~--------~l~~L~~L~l~~~~-~~~~~~~~l~~-~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 473 MHHVLSGCDSLRKLEIRDCP-FGDKALLANAS--------KLETMRSLWMSSCS-VSFGACKLLGQ-KMPKLNVEVIDER 541 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCS-CCHHHHHHTGG--------GGGGSSEEEEESSC-CBHHHHHHHHH-HCTTEEEEEECSS
T ss_pred HHHHHHCCCCCCEEECCCCC-CCHHHHHHHHH--------HCCCCCEEEEECCC-CCHHHHHHHHH-HCCCCEEEEECCC
T ss_conf 99998549986878886998-73999999997--------58887789614787-97999999997-6999779983588
Q ss_pred CC
Q ss_conf 89
Q 006538 567 VN 568 (641)
Q Consensus 567 ~~ 568 (641)
..
T Consensus 542 ~~ 543 (594)
T 2p1m_B 542 GA 543 (594)
T ss_dssp SC
T ss_pred CC
T ss_conf 86
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=1.00 E-value=1 Score=246.51 Aligned_cols=443 Identities=16% Similarity=0.180 Sum_probs=304.0
Q ss_pred HHHCCCCCCCCCCCCC--------------CHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHC--CC-CCEECCCCCC
Q ss_conf 9850012233468888--------------94434012899999507996338999389983211--55-3603046788
Q 006538 47 QILSFLTSFHLLDIAL--------------STEIIKPLLPPNPYLRSLKVDCGKLDDSAIELMLR--PT-LHELCLHNCA 109 (641)
Q Consensus 47 ~~~~~l~~l~l~~~~~--------------~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~--~~-L~~L~L~~~~ 109 (641)
...+.+++++++.+.. ....+..+...+++|++|+++.+.+++..+..+.. +. |++|++.+|.
T Consensus 70 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~ 149 (592)
T 3ogk_B 70 RRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS 149 (592)
T ss_dssp HHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE
T ss_pred HHCCCCEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCEECHHHHHHHHHHCCCCCCEEECCCCC
T ss_conf 76899728982487533220555644334232899999964889886971131766999999997420267699786789
Q ss_pred CCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCC-CCCHHHHHHHHHHCCCCCEE
Q ss_conf 86179999997219887667546653225864444439999823984341312433232-23113699876413777967
Q 006538 110 DFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISL-FLRHNFARVWALASEKLTSL 188 (641)
Q Consensus 110 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~l~~~~~~~L~~L 188 (641)
.++...+..+...|++|++|++++|... ......+..+...+++|+.|++..+... +....+..+ ...+++|+.|
T Consensus 150 ~~~~~~l~~~~~~~~~L~~L~L~~~~~~---~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~-~~~~~~L~~L 225 (592)
T 3ogk_B 150 GFTTDGLLSIVTHCRKIKTLLMEESSFS---EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI-ARNCRSLVSV 225 (592)
T ss_dssp EEEHHHHHHHHHHCTTCSEEECTTCEEE---CCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHH-HHHCTTCCEE
T ss_pred CCCHHHHHHHHHHCCCCCEEECCCCCCC---CCCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHH-HHHCCCCCEE
T ss_conf 9687899999961999788977555245---75306999877518874178866057776688999999-9619998688
Q ss_pred ECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCH--HHHHHHHHCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 62465757675222999889999987689978886188842157897--8999999429997488458999878854455
Q 006538 189 EIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITD--AMVGTISQGLVSLTHLDLRDAPLIEPRITFD 266 (641)
Q Consensus 189 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 266 (641)
++.++........ ...+++|++|.++...... .........+++|+.|.+.++.
T Consensus 226 ~L~~~~~~~l~~~---------------~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--------- 281 (592)
T 3ogk_B 226 KVGDFEILELVGF---------------FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG--------- 281 (592)
T ss_dssp ECSSCBGGGGHHH---------------HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC---------
T ss_pred ECCCCCHHHHHHH---------------HHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC---------
T ss_conf 6567667878988---------------7434677751434134665547899876302103546823134---------
Q ss_pred CCHHHHH-HHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEEE
Q ss_conf 5547778-632399973898102211111234224836899999709986489945977789889999998399952998
Q 006538 267 LTNSGLQ-QINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLR 345 (641)
Q Consensus 267 ~~~~~l~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 345 (641)
...+. .+..+++|++|+++ .+.+++..+..+...+++|+.|++.+ .+.+.++..+...+++|++|+
T Consensus 282 --~~~l~~~~~~~~~L~~L~Ls---------~~~l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 282 --PNEMPILFPFAAQIRKLDLL---------YALLETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp --TTTGGGGGGGGGGCCEEEET---------TCCCCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEE
T ss_pred --HHHHHHHHHHCCCCCEEECC---------CCCCCHHHHHHHHHHCCCCCEEECCC--CCCHHHHHHHHHHCCCCCEEE
T ss_conf --66789988643878688247---------88677778999997384877786157--668799999998687999899
Q ss_pred ECC----------CCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHC-CCCCCEEECCC---CCCCCHHHHHHH
Q ss_conf 158----------8999999999998419999789815688887889998026-99989994689---988892665753
Q 006538 346 VSH----------GTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLAS-NTGIKVLDLRD---CKNLGDEALRAI 411 (641)
Q Consensus 346 l~~----------~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-~~~L~~L~l~~---~~~~~~~~~~~l 411 (641)
+++ |..+++..+..+...+++|+.|++ .|+.+++.++..+.. +++|+.|++++ |..+++...
T Consensus 349 L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~--- 424 (592)
T 3ogk_B 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL--- 424 (592)
T ss_dssp EECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC---
T ss_pred EECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE-ECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHH---
T ss_conf 4067655333344685378999999850835708986-568753999999996288876799862378765567408---
Q ss_pred HCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCEEECCCCC-CCCHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHH
Q ss_conf 08989759983687678699999998518886488457888-88878999974148989802893699999997889999
Q 006538 412 SSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCK-RLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTL 490 (641)
Q Consensus 412 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~-~l~~~~~~~l~~~~~~~~L~~L~l~~~~~i~~~~~~~l 490 (641)
+.++..+.. .+++|+.|+++.|. .+++.++..+...+ ++|+.|++++ +.+++.++..+
T Consensus 425 -----------------~~~~~~~~~-~~~~L~~L~L~~~~~~l~~~~~~~~~~~~--~~L~~L~L~~-n~l~~~~~~~~ 483 (592)
T 3ogk_B 425 -----------------DNGVRSLLI-GCKKLRRFAFYLRQGGLTDLGLSYIGQYS--PNVRWMLLGY-VGESDEGLMEF 483 (592)
T ss_dssp -----------------HHHHHHHHH-HCTTCCEEEEECCGGGCCHHHHHHHHHSC--TTCCEEEECS-CCSSHHHHHHH
T ss_pred -----------------HHHHHHHHH-HCCCCCEEEEECCCCCCCHHHHHHHHHHC--CCCEEEECCC-CCCCHHHHHHH
T ss_conf -----------------899999997-39887889886578986589999998748--2022766558-99988999999
Q ss_pred HHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 8169998788316999879899999980234576667998648952689999999999963879998209982077
Q 006538 491 ATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGS 566 (641)
Q Consensus 491 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~~L~~L~l~~~ 566 (641)
...|++|++|++++|+ +++.++..+.. .+++|++|++++|. +++.++..+.. .+|.++...+...
T Consensus 484 ~~~~~~L~~L~l~~n~-l~~~~~~~~~~--------~l~~L~~L~ls~n~-it~~~~~~l~~-~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 484 SRGCPNLQKLEMRGCC-FSERAIAAAVT--------KLPSLRYLWVQGYR-ASMTGQDLMQM-ARPYWNIELIPSR 548 (592)
T ss_dssp HTCCTTCCEEEEESCC-CBHHHHHHHHH--------HCSSCCEEEEESCB-CCTTCTTGGGG-CCTTEEEEEECCC
T ss_pred HHCCCCCCEEECCCCC-CCHHHHHHHHH--------HCCCCCEEECCCCC-CCHHHHHHHHH-HCCCCEEEEECCC
T ss_conf 8548636866452898-86799999998--------66756846773885-88899999998-6998479984686
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=237.35 Aligned_cols=72 Identities=17% Similarity=0.126 Sum_probs=33.6
Q ss_pred HCCCHHHHHHHHHCCCCCCCCCCCCCCHH--HHH-----------------------CCCCCCCCCEEEEEECCCCCHHH
Q ss_conf 04018999999850012233468888944--340-----------------------12899999507996338999389
Q 006538 37 TCSTFRACAAQILSFLTSFHLLDIALSTE--IIK-----------------------PLLPPNPYLRSLKVDCGKLDDSA 91 (641)
Q Consensus 37 vcr~w~~~~~~~~~~l~~l~l~~~~~~~~--~l~-----------------------~~~~~~~~L~~L~L~~~~~~~~~ 91 (641)
-|..|..+.-. ...++.++++...+... .+. ..+..+++|+.|+++.+.+....
T Consensus 38 ~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~ 116 (768)
T 3rgz_A 38 NPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPV 116 (768)
T ss_dssp CGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEG
T ss_pred CCCCCCCEEEC-CCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCC
T ss_conf 87688413878-99278987789986775576696573168022467868886787033245788998989898578707
Q ss_pred HH--HHHC-CCCCEECCCCCC
Q ss_conf 98--3211-553603046788
Q 006538 92 IE--LMLR-PTLHELCLHNCA 109 (641)
Q Consensus 92 ~~--~~~~-~~L~~L~L~~~~ 109 (641)
.. .+.. ++|+.|++++|.
T Consensus 117 ~~~~~l~~l~~L~~L~Ls~n~ 137 (768)
T 3rgz_A 117 TTLTSLGSCSGLKFLNVSSNT 137 (768)
T ss_dssp GGGGGGGGCTTCCEEECCSSE
T ss_pred CCHHHHHCCCCCCEEECCCCC
T ss_conf 896787278899989896882
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=229.16 Aligned_cols=111 Identities=23% Similarity=0.149 Sum_probs=47.4
Q ss_pred HHCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHCCC
Q ss_conf 83999529981588999999999998419999789815688887889998026999899946899888926657530898
Q 006538 336 HSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLP 415 (641)
Q Consensus 336 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 415 (641)
..+++|+.|++++|.. ... +......+++|+.|+++++ .+.......+..+++|+.|++++| .++......+..++
T Consensus 439 ~~l~~L~~L~L~~n~l-~~~-~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 439 GSLSKLRDLKLWLNML-EGE-IPQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNN-RLTGEIPKWIGRLE 514 (768)
T ss_dssp GGCTTCCEEECCSSCC-CSC-CCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCT
T ss_pred HCCCCCCEEECCCCCC-CCC-CCHHHCCCCCCEEEEECCC-CCCCCCCHHHHCCCCCCEEECCCC-CCCCCCCHHHHCCC
T ss_conf 4499889898978815-471-8978828777329990199-513758878816998998975399-51896876885689
Q ss_pred CCCEEECCCCCCCHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 9759983687678699999998518886488457888
Q 006538 416 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCK 452 (641)
Q Consensus 416 ~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~ 452 (641)
+|+.|++++|.++......+.. +++|+.|++++|.
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~--l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGD--CRSLIWLDLNTNL 549 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGG--CTTCCEEECCSSE
T ss_pred CCCEEECCCCCCCCCCCHHHCC--CCCCCEEECCCCC
T ss_conf 9998989789433748877708--8989989898884
No 7
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=1.00 E-value=1 Score=219.67 Aligned_cols=412 Identities=22% Similarity=0.280 Sum_probs=212.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHH-C-CCCCEECCCCCCCCCHHH---HHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 9950799633899938998321-1-553603046788861799---9999721988766754665322586444443999
Q 006538 75 PYLRSLKVDCGKLDDSAIELML-R-PTLHELCLHNCADFSGKL---LSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEE 149 (641)
Q Consensus 75 ~~L~~L~L~~~~~~~~~~~~~~-~-~~L~~L~L~~~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 149 (641)
++++.|+++++.+++.....+. . ++|+.|++.+|. ++... +...++.+++|++|+++++ .+.+.++..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n------~l~~~~~~~ 75 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN------ELGDVGVHC 75 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC------CCHHHHHHH
T ss_pred CCCEEHHHHHCCCCCHHHHHHHHHCCCCCEEECCCCC-CCHHHHHHHHHHHHHCCCCCEEECCCC------CCCHHHHHH
T ss_conf 4200011233246863499998635776499815788-877789999999974898577868788------677489999
Q ss_pred HHHCCC----CCCEEECCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 982398----4341312433232231136998764137779676246575767522299988999998768997888618
Q 006538 150 LLNGCP----QLEALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQK 225 (641)
Q Consensus 150 ~~~~~~----~L~~L~L~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 225 (641)
+...++ +|++|++..+ .+.+.+...+ ... +..+++|++
T Consensus 76 l~~~l~~~~~~L~~L~L~~n--~i~~~~~~~l---------------------~~~---------------l~~~~~L~~ 117 (461)
T 1z7x_W 76 VLQGLQTPSCKIQKLSLQNC--CLTGAGCGVL---------------------SST---------------LRTLPTLQE 117 (461)
T ss_dssp HHHTTCSTTCCCCEEECTTS--CCBGGGHHHH---------------------HHH---------------TTSCTTCCE
T ss_pred HHHHHHHCCCCEEEEECCCC--CCCHHHHHHH---------------------HHH---------------HCCCCCEEE
T ss_conf 99987407876317980289--7877999999---------------------999---------------724896459
Q ss_pred EEEECCCCCHHHHHHHHHC----CCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 8842157897899999942----999748845899987885445555477786323999738981022111112342248
Q 006538 226 LCLSVDYITDAMVGTISQG----LVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVN 301 (641)
Q Consensus 226 L~L~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 301 (641)
|+++.+.+.+.....+... .++|++|++++| .++..+..
T Consensus 118 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n---------~l~~~~~~---------------------------- 160 (461)
T 1z7x_W 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC---------SLSAASCE---------------------------- 160 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS---------CCBGGGHH----------------------------
T ss_pred EECCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCC---------CCCHHHHH----------------------------
T ss_conf 98979857637899999998407882159987799---------88789999----------------------------
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHH----HCCCCCEEEECCCCCCCHHH---HHHHHHCCCCCCEEECCC
Q ss_conf 36899999709986489945977789889999998----39995299815889999999---999984199997898156
Q 006538 302 DLGILLMADKCASMESICLGGFCRVTDTGFKTILH----SCSNLYKLRVSHGTQLTDLV---FHDISATSLSLTHVCLRW 374 (641)
Q Consensus 302 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~l~~~~---~~~~~~~~~~L~~L~l~~ 374 (641)
.+......+++|++|+++++ .+++.++..+.. ..++|+.|++++| .++..+ +......+++|++|++++
T Consensus 161 --~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 161 --PLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp --HHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred --HHHHHHHHCCCCCEEECCCC-CCCHHHHHHHHHHHHCCCCCCEEEECCCC-CCCHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf --99999954999888977688-76607999999998517998149872399-996899999999997089966796458
Q ss_pred CCCCCHHHHHHHH-----CCCCCCEEECCCCCCCCHHHHHH----HHCCCCCCEEECCCCCCCHHHHHHHHHH---CCCC
Q ss_conf 8888788999802-----69998999468998889266575----3089897599836876786999999985---1888
Q 006538 375 CNLLTNHAIKSLA-----SNTGIKVLDLRDCKNLGDEALRA----ISSLPQLKILLLDGSDISDVGVSYLRLT---VITS 442 (641)
Q Consensus 375 ~~~l~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~l~~~~~~~l~~~---~~~~ 442 (641)
+ .+++.+...+. .+++|+.|++++| .++..+... +..+++|+.|++++|.+++.+...+... ..++
T Consensus 237 n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 237 N-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314 (461)
T ss_dssp S-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCC
T ss_pred C-CCCHHHHHHHHHHHHCCCCCCEEEECCCC-CCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 8-68718999999997167877128987379-788899999999983189845587889877668999999986069962
Q ss_pred CCEEECCCCCCCCHHHHHHHH---CCCCCCCCCEEECCCCCCCCHHHHHHHHHC----CCCCCEEECCCCCCCCHHHHHH
Q ss_conf 648845788888878999974---148989802893699999997889999816----9998788316999879899999
Q 006538 443 LVKLSLRGCKRLTDKCISALF---DGTSKLQLQELDLSNLPHLSDNGILTLATC----RVPISELRVRQCPLIGDTSVIA 515 (641)
Q Consensus 443 L~~L~l~~c~~l~~~~~~~l~---~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~----~~~L~~L~l~~~~~l~~~~~~~ 515 (641)
|+.|++++|. +++.+...++ ..+ ++|++|++++ +.+++.+...+... .++|++|++++| .+++.+...
T Consensus 315 L~~L~L~~n~-l~~~~~~~l~~~l~~~--~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~ 389 (461)
T 1z7x_W 315 LESLWVKSCS-FTAACCSHFSSVLAQN--RFLLELQISN-NRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSS 389 (461)
T ss_dssp CCEEECTTSC-CBGGGHHHHHHHHHHC--SSCCEEECCS-SBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHH
T ss_pred CEEEECCCCC-CCHHHHHHHHHHHHHC--CCCCEEECCC-CCCCCCCHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHHH
T ss_conf 0166867899-9667799999998527--9866798158-856633699999997379986179878778-987366999
Q ss_pred HHHCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHC---CCCCCCEEEEECCCC----CHHHHHHHHHHCCCEEEE
Q ss_conf 9802345766679986489526899999999999638---799982099820778----988999999519980870
Q 006538 516 LASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK---PYFPRLRWLGVTGSV----NRDILDALARSRPFLNVA 585 (641)
Q Consensus 516 l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~l~~---~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~l~~~ 585 (641)
+...+. .+++|++|++++|. +++.++..+.. ...++|+.|.+.++. ..+.++.+....|.+++.
T Consensus 390 l~~~l~-----~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 390 LAATLL-----ANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp HHHHHH-----HCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHHH-----HCCCCCEEECCCCC-CCHHHHHHHHHHHCCCCCCHHHEEECCCCCCHHHHHHHHHHHCCCCCCEEE
T ss_conf 999998-----49994589898997-887999999998656885255503033556789999999975339972760
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=219.48 Aligned_cols=106 Identities=15% Similarity=-0.026 Sum_probs=52.1
Q ss_pred HCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHC-CCCCEECCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 5001223346888894434012899999507996338999389983211-553603046788861799999972198876
Q 006538 49 LSFLTSFHLLDIALSTEIIKPLLPPNPYLRSLKVDCGKLDDSAIELMLR-PTLHELCLHNCADFSGKLLSEIGGKCKDLR 127 (641)
Q Consensus 49 ~~~l~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~ 127 (641)
++.++.++++.+.+... .+..+..+++|+.|+++.+.+.......+.. ++|++|+++++. +..... ..+..+++|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~ 108 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP-LIFMAE-TALSGPKALK 108 (606)
T ss_dssp CTTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CSEECT-TTTSSCTTCC
T ss_pred CCCCCEEECCCCCCCCC-CHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCC-CCCCCH-HHHCCCCCCC
T ss_conf 98675898158734717-96672567665289788983552485113684336764488985-654586-5523442153
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECCC
Q ss_conf 6754665322586444443999982398434131243
Q 006538 128 SLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMF 164 (641)
Q Consensus 128 ~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 164 (641)
.|+++++........ .+..+++|+.|++.+
T Consensus 109 ~L~L~~n~i~~l~~~-------~~~~l~~L~~L~L~~ 138 (606)
T 3t6q_A 109 HLFFIQTGISSIDFI-------PLHNQKTLESLYLGS 138 (606)
T ss_dssp EEECTTSCCSCGGGS-------CCTTCTTCCEEECCS
T ss_pred EEECCCCCCCCCCCC-------HHCCCCCCCEEECCC
T ss_conf 765212676657810-------122378223898879
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=219.07 Aligned_cols=107 Identities=21% Similarity=0.107 Sum_probs=57.4
Q ss_pred HCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHC-CCCCEECCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 5001223346888894434012899999507996338999389983211-553603046788861799999972198876
Q 006538 49 LSFLTSFHLLDIALSTEIIKPLLPPNPYLRSLKVDCGKLDDSAIELMLR-PTLHELCLHNCADFSGKLLSEIGGKCKDLR 127 (641)
Q Consensus 49 ~~~l~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~ 127 (641)
.+.++.++++.+.+.. ..+..+..+++|+.|+++.+.+.......+.. ++|+.|++.++. ++...... +..+++|+
T Consensus 56 l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~-~~~l~~L~ 132 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIP-LHNQKTLE 132 (606)
T ss_dssp CTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSC-CTTCTTCC
T ss_pred CCCCEEEECCCCCCCE-ECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCC-CCCCCCCH-HCCCCCCC
T ss_conf 7665289788983552-485113684336764488985654586552344215376521267-66578101-22378223
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCC
Q ss_conf 67546653225864444439999823984341312433
Q 006538 128 SLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFD 165 (641)
Q Consensus 128 ~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 165 (641)
.|+++++...... .... ..+++|+.|++..+
T Consensus 133 ~L~L~~n~l~~~~------~~~~-~~l~~L~~L~L~~n 163 (606)
T 3t6q_A 133 SLYLGSNHISSIK------LPKG-FPTEKLKVLDFQNN 163 (606)
T ss_dssp EEECCSSCCCCCC------CCTT-CCCTTCCEEECCSS
T ss_pred EEECCCCCCCCCC------CCCC-CCCCCCCEEECCCC
T ss_conf 8988798341147------6545-68765687776568
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=213.90 Aligned_cols=458 Identities=14% Similarity=0.054 Sum_probs=198.0
Q ss_pred HCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHC-CCCCEECCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 5001223346888894434012899999507996338999389983211-553603046788861799999972198876
Q 006538 49 LSFLTSFHLLDIALSTEIIKPLLPPNPYLRSLKVDCGKLDDSAIELMLR-PTLHELCLHNCADFSGKLLSEIGGKCKDLR 127 (641)
Q Consensus 49 ~~~l~~l~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~ 127 (641)
++.++.++++.+.+... ....+..+++|+.|+++.+.++......+.. ++|+.|+++++. ++.... ..+..+++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p-~~~~~l~~L~ 107 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSP-GSFSGLTSLE 107 (606)
T ss_dssp CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCCT-TSSTTCTTCC
T ss_pred CCCCCEEECCCCCCCEE-CHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCC-CCCCCH-HHCCCCCCCC
T ss_conf 88767887888975773-75455577667488688773664397773060106886787985-630485-2207865378
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCC-C-CHHHHHHHHHHCCCCCEEECCCCC-----HHHHHH
Q ss_conf 675466532258644444399998239843413124332322-3-113699876413777967624657-----576752
Q 006538 128 SLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLF-L-RHNFARVWALASEKLTSLEIGYIS-----SVMVTE 200 (641)
Q Consensus 128 ~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~-~~~~~~l~~~~~~~L~~L~l~~~~-----~~~~~~ 200 (641)
.|+++++......... +..+++|+.|++..+.... . +..+. ..++|++|++++.. ...+..
T Consensus 108 ~L~L~~n~l~~~~~~~-------~~~l~~L~~L~L~~n~l~~~~lp~~~~-----~l~~L~~L~Ls~n~l~~~~~~~~~~ 175 (606)
T 3vq2_A 108 NLVAVETKLASLESFP-------IGQLITLKKLNVAHNFIHSCKLPAYFS-----NLTNLVHVDLSYNYIQTITVNDLQF 175 (606)
T ss_dssp EEECTTSCCCCSSSSC-------CTTCTTCCEEECCSSCCCCCCCCGGGG-----TCTTCCEEECCSSCCCEECTTTTHH
T ss_pred EEECCCCCCCCCCCCC-------CCCCCCCCEEECCCCCCCCEECHHHHH-----HCCCCCEEECCCCCCEECCHHHHHH
T ss_conf 8870377555445113-------489887798968788523253068673-----2677778876688531057334121
Q ss_pred HC-------CCCCCCCCCCCCC-CCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEECCCCCCCC--CCC-------
Q ss_conf 22-------9998899999876-899788861888421578978999999429997488458999878--854-------
Q 006538 201 LL-------SPNVEPHQSPNQI-RPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIE--PRI------- 263 (641)
Q Consensus 201 ~~-------~~~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~------- 263 (641)
+. ...+......... ......+|+.|+++.+.+...........+++++.+.+....... ...
T Consensus 176 l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~ 255 (606)
T 3vq2_A 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255 (606)
T ss_dssp HHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGG
T ss_pred HHCCCCCCCEEECCCCCCCEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 20342002430046897532571105676043352467856166778886026656523141111036774102681776
Q ss_pred ---------------CCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCH
Q ss_conf ---------------45555477786323999738981022111112342248368999997099864899459777898
Q 006538 264 ---------------TFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTD 328 (641)
Q Consensus 264 ---------------~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 328 (641)
...+.. ....+..+++|+.|+++.+ .+.... ....+++|+.|++.+|. +..
T Consensus 256 ~~l~~l~l~~l~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~---------~~~~l~---~l~~~~~L~~L~l~~n~-l~~ 321 (606)
T 3vq2_A 256 EGLCDVTIDEFRLTYTNDFSD-DIVKFHCLANVSAMSLAGV---------SIKYLE---DVPKHFKWQSLSIIRCQ-LKQ 321 (606)
T ss_dssp TTGGGSEEEEEEECCCTTCCG-GGGSCGGGTTCSEEEEESC---------CCCCCC---CCCTTCCCSEEEEESCC-CSS
T ss_pred HHHHHCCHHHEECCCCCCCCC-CCCCCCCCCCCCEEEECCC---------CCHHHH---HCCCCCCCCEEECCCCC-CCC
T ss_conf 666543474501236655554-3222354887898771476---------604435---43340117789764666-765
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHH--HHHHHCCCCCCEEECCCCCCCCHH
Q ss_conf 899999983999529981588999999999998419999789815688887889--998026999899946899888926
Q 006538 329 TGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHA--IKSLASNTGIKVLDLRDCKNLGDE 406 (641)
Q Consensus 329 ~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~l~~~~~L~~L~l~~~~~~~~~ 406 (641)
. ..+ .+++|+.|+++++...... ....+++|+.|+++++ .++..+ ...+..+++|+.|++++| .++..
T Consensus 322 l--p~~--~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~ 391 (606)
T 3vq2_A 322 F--PTL--DLPFLKSLTLTMNKGSISF----KKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIM 391 (606)
T ss_dssp C--CCC--CCSSCCEEEEESCSSCEEC----CCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSC-SEEEE
T ss_pred C--CCC--CCCCCCEEECCCCCCCCCH----HHCCCCCCCEEECCCC-CCCCCCCHHHHHCCCCCCCEEECCCC-CCCCC
T ss_conf 4--667--8875564454478685310----0024898887977587-36877520122146775548678899-53000
Q ss_pred HHHHHHCCCCCCEEECCCCCCCHHHH-HHHHHHCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCHH
Q ss_conf 65753089897599836876786999-99998518886488457888888789999741489898028936999999978
Q 006538 407 ALRAISSLPQLKILLLDGSDISDVGV-SYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDN 485 (641)
Q Consensus 407 ~~~~l~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~i~~~ 485 (641)
. ..+..+++|+.|++++|.+..... ..+. .+++|+.|++++|. ++......+ ..+ ++|++|+++++ .++..
T Consensus 392 ~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~-l~~~~~~~~-~~l--~~L~~L~l~~n-~l~~~ 463 (606)
T 3vq2_A 392 S-ANFMGLEELQHLDFQHSTLKRVTEFSAFL--SLEKLLYLDISYTN-TKIDFDGIF-LGL--TSLNTLKMAGN-SFKDN 463 (606)
T ss_dssp C-CCCTTCTTCCEEECTTSEEESTTTTTTTT--TCTTCCEEECTTSC-CEECCTTTT-TTC--TTCCEEECTTC-EEGGG
T ss_pred H-HHCCCCCCCCEEECCCCCCCCCCCHHHHH--CCCCCCEEECCCCC-CCCCCHHHH-CCC--CCCCEEECCCC-CCCCC
T ss_conf 5-54068888896589887058753764564--62137889896897-874335553-477--87898989898-37985
Q ss_pred HHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 89999816999878831699987989999998023457666799864895268999999999996387999820998207
Q 006538 486 GILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTG 565 (641)
Q Consensus 486 ~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~l~~~~~~~L~~L~l~~ 565 (641)
.+......+++|+.|++++| .++......+. .+++|++|++++|. ++......+.. +++|+.|++++
T Consensus 464 ~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~---------~l~~L~~L~Ls~N~-l~~~~~~~~~~--l~~L~~L~l~~ 530 (606)
T 3vq2_A 464 TLSNVFANTTNLTFLDLSKC-QLEQISWGVFD---------TLHRLQLLNMSHNN-LLFLDSSHYNQ--LYSLSTLDCSF 530 (606)
T ss_dssp EECSCCTTCTTCCEEECTTS-CCCEECTTTTT---------TCTTCCEEECCSSC-CSCEEGGGTTT--CTTCCEEECTT
T ss_pred CHHHHHCCCCCCCEEECCCC-CCCCCCHHHHC---------CCCCCCEEECCCCC-CCCCCHHHCCC--CCCCCEEECCC
T ss_conf 46776045788998989888-57764865615---------46468989898995-78748777068--87689888989
Q ss_pred C
Q ss_conf 7
Q 006538 566 S 566 (641)
Q Consensus 566 ~ 566 (641)
|
T Consensus 531 N 531 (606)
T 3vq2_A 531 N 531 (606)
T ss_dssp S
T ss_pred C
T ss_conf 8
Done!