Query 006539
Match_columns 641
No_of_seqs 589 out of 4432
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 00:45:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2415 Electron transfer flav 100.0 1E-121 2E-126 909.0 41.8 540 100-641 69-621 (621)
2 COG0644 FixC Dehydrogenases (f 100.0 2.3E-39 5.1E-44 347.5 38.5 338 106-486 2-341 (396)
3 PRK10015 oxidoreductase; Provi 100.0 1.9E-39 4.1E-44 350.6 37.2 368 106-505 4-395 (429)
4 PRK10157 putative oxidoreducta 100.0 3.5E-37 7.7E-42 333.3 35.7 367 106-505 4-394 (428)
5 PLN00093 geranylgeranyl diphos 100.0 5.4E-30 1.2E-34 277.4 35.6 338 104-486 36-385 (450)
6 TIGR02028 ChlP geranylgeranyl 100.0 1.1E-28 2.4E-33 264.7 34.7 334 108-486 1-346 (398)
7 TIGR02023 BchP-ChlP geranylger 100.0 1.3E-28 2.7E-33 264.3 34.5 326 108-485 1-335 (388)
8 TIGR02032 GG-red-SF geranylger 100.0 1.8E-28 4E-33 253.1 32.6 293 108-449 1-295 (295)
9 PF05187 ETF_QO: Electron tran 100.0 1.2E-32 2.7E-37 230.4 -0.2 109 488-596 1-109 (110)
10 PRK07045 putative monooxygenas 100.0 6.2E-28 1.3E-32 259.3 34.4 341 106-486 4-359 (388)
11 COG0654 UbiH 2-polyprenyl-6-me 100.0 6.9E-28 1.5E-32 258.2 33.5 336 107-486 2-351 (387)
12 PRK06617 2-octaprenyl-6-methox 100.0 5.5E-28 1.2E-32 258.1 30.8 328 108-486 2-339 (374)
13 PF01494 FAD_binding_3: FAD bi 100.0 9.5E-29 2.1E-33 261.8 24.8 325 107-469 1-348 (356)
14 PRK07538 hypothetical protein; 100.0 2.3E-27 5.1E-32 256.7 33.0 332 109-480 2-361 (413)
15 PRK08013 oxidoreductase; Provi 100.0 9.2E-28 2E-32 258.7 29.5 336 107-486 3-358 (400)
16 PRK06753 hypothetical protein; 100.0 1.9E-27 4.1E-32 254.2 31.2 331 109-487 2-340 (373)
17 PRK08244 hypothetical protein; 100.0 4.6E-27 9.9E-32 260.1 34.6 337 106-485 1-344 (493)
18 PRK08243 4-hydroxybenzoate 3-m 100.0 2.6E-27 5.5E-32 254.6 30.4 341 106-486 1-351 (392)
19 PRK08163 salicylate hydroxylas 100.0 6.9E-27 1.5E-31 251.9 33.5 337 106-486 3-357 (396)
20 PRK05868 hypothetical protein; 100.0 6.1E-27 1.3E-31 249.4 32.3 332 109-486 3-353 (372)
21 PRK08773 2-octaprenyl-3-methyl 100.0 3.3E-27 7.2E-32 253.9 30.0 320 105-469 4-342 (392)
22 PRK05714 2-octaprenyl-3-methyl 100.0 3E-27 6.5E-32 255.4 29.4 336 106-487 1-362 (405)
23 PRK07333 2-octaprenyl-6-methox 100.0 2.4E-27 5.2E-32 256.2 28.4 337 108-486 2-356 (403)
24 TIGR01988 Ubi-OHases Ubiquinon 100.0 5.4E-27 1.2E-31 251.8 30.8 334 109-486 1-352 (385)
25 PRK07364 2-octaprenyl-6-methox 100.0 4.6E-27 9.9E-32 255.0 29.6 340 106-486 17-370 (415)
26 PRK07588 hypothetical protein; 100.0 1.2E-26 2.5E-31 249.7 32.2 335 109-487 2-351 (391)
27 PRK08132 FAD-dependent oxidore 100.0 1.1E-26 2.4E-31 260.0 33.0 339 104-485 20-371 (547)
28 PRK06183 mhpA 3-(3-hydroxyphen 100.0 1.1E-26 2.4E-31 259.3 32.7 340 106-486 9-359 (538)
29 PRK06847 hypothetical protein; 100.0 2E-26 4.4E-31 246.5 33.2 342 107-499 4-369 (375)
30 PRK06185 hypothetical protein; 100.0 1.7E-26 3.7E-31 249.8 32.6 339 105-485 4-357 (407)
31 TIGR01989 COQ6 Ubiquinone bios 100.0 7.3E-27 1.6E-31 254.3 29.7 340 108-486 1-409 (437)
32 PRK09126 hypothetical protein; 100.0 8.7E-27 1.9E-31 250.8 29.4 336 106-486 2-356 (392)
33 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 1.2E-26 2.5E-31 248.9 29.7 342 106-486 1-351 (390)
34 TIGR01984 UbiH 2-polyprenyl-6- 100.0 2.2E-26 4.8E-31 246.8 30.2 334 109-486 1-349 (382)
35 PLN02985 squalene monooxygenas 100.0 1.6E-25 3.4E-30 246.3 35.5 360 104-505 40-423 (514)
36 PRK06184 hypothetical protein; 100.0 6.5E-26 1.4E-30 251.3 32.6 331 107-480 3-347 (502)
37 PRK06996 hypothetical protein; 100.0 7.6E-26 1.7E-30 243.6 32.0 335 104-486 8-361 (398)
38 PRK08850 2-octaprenyl-6-methox 100.0 6.5E-26 1.4E-30 244.9 31.4 334 107-486 4-358 (405)
39 PRK06475 salicylate hydroxylas 100.0 1.1E-25 2.4E-30 242.6 32.5 330 108-479 3-354 (400)
40 PRK07494 2-octaprenyl-6-methox 100.0 4.6E-26 1E-30 244.8 28.8 331 105-485 5-352 (388)
41 PRK08849 2-octaprenyl-3-methyl 100.0 1.3E-25 2.8E-30 240.8 32.0 335 107-486 3-350 (384)
42 PRK06834 hypothetical protein; 99.9 1.7E-25 3.6E-30 245.6 33.0 321 107-480 3-332 (488)
43 PRK08294 phenol 2-monooxygenas 99.9 1.8E-25 3.9E-30 251.9 34.0 349 106-486 31-413 (634)
44 PTZ00367 squalene epoxidase; P 99.9 2.8E-25 6.2E-30 245.3 34.5 366 106-505 32-437 (567)
45 PRK07236 hypothetical protein; 99.9 1.1E-25 2.5E-30 241.4 29.6 326 106-481 5-371 (386)
46 PRK08020 ubiF 2-octaprenyl-3-m 99.9 1.2E-25 2.7E-30 241.8 29.4 317 106-469 4-341 (391)
47 PRK07608 ubiquinone biosynthes 99.9 1.8E-25 3.8E-30 240.4 30.4 336 106-486 4-355 (388)
48 TIGR03219 salicylate_mono sali 99.9 2E-25 4.4E-30 241.8 30.3 337 109-486 2-374 (414)
49 PRK06126 hypothetical protein; 99.9 2.8E-25 6E-30 248.9 32.3 332 105-481 5-371 (545)
50 PRK07190 hypothetical protein; 99.9 3.6E-25 7.7E-30 242.7 31.7 325 106-481 4-343 (487)
51 PRK05732 2-octaprenyl-6-methox 99.9 1.2E-24 2.6E-29 234.5 31.1 336 106-486 2-358 (395)
52 PLN02927 antheraxanthin epoxid 99.9 2.4E-23 5.2E-28 230.9 32.5 333 104-485 78-446 (668)
53 PRK11445 putative oxidoreducta 99.9 9.6E-23 2.1E-27 215.6 33.1 305 108-468 2-315 (351)
54 KOG2614 Kynurenine 3-monooxyge 99.9 2E-24 4.3E-29 219.2 16.4 304 107-455 2-328 (420)
55 COG2440 FixX Ferredoxin-like p 99.9 1.7E-25 3.7E-30 178.7 3.9 79 553-639 18-97 (99)
56 TIGR01790 carotene-cycl lycope 99.9 3E-21 6.5E-26 207.5 35.2 305 109-469 1-318 (388)
57 PLN02697 lycopene epsilon cycl 99.9 8.3E-21 1.8E-25 207.7 35.9 314 106-478 107-447 (529)
58 PRK08255 salicylyl-CoA 5-hydro 99.9 1.1E-21 2.3E-26 226.4 22.7 324 109-486 2-340 (765)
59 PLN02463 lycopene beta cyclase 99.9 2.1E-19 4.5E-24 193.9 30.9 294 106-455 27-334 (447)
60 PF04820 Trp_halogenase: Trypt 99.8 9.3E-20 2E-24 197.9 23.9 222 205-469 147-370 (454)
61 KOG1298 Squalene monooxygenase 99.8 6.7E-19 1.4E-23 175.5 23.6 301 104-451 42-362 (509)
62 PRK15449 ferredoxin-like prote 99.8 3.3E-21 7.2E-26 157.5 3.0 77 553-639 15-93 (95)
63 TIGR01789 lycopene_cycl lycope 99.8 1.4E-16 3E-21 169.1 30.0 298 109-465 1-302 (370)
64 PF05834 Lycopene_cycl: Lycope 99.8 4.4E-16 9.5E-21 165.9 29.9 281 109-451 1-290 (374)
65 KOG3855 Monooxygenase involved 99.8 6.3E-17 1.4E-21 163.3 20.3 331 105-467 34-428 (481)
66 PRK04176 ribulose-1,5-biphosph 99.7 1.1E-15 2.3E-20 153.6 17.6 160 104-295 22-183 (257)
67 TIGR00292 thiazole biosynthesi 99.7 1.7E-15 3.6E-20 151.6 17.8 159 105-298 19-183 (254)
68 PF01946 Thi4: Thi4 family; PD 99.6 2.3E-15 5E-20 141.5 12.7 157 104-295 14-175 (230)
69 COG1635 THI4 Ribulose 1,5-bisp 99.6 1E-14 2.2E-19 135.9 15.4 155 105-294 28-187 (262)
70 PRK12771 putative glutamate sy 99.6 2.6E-13 5.5E-18 152.5 21.9 60 566-628 502-561 (564)
71 TIGR03315 Se_ygfK putative sel 99.5 3.4E-12 7.4E-17 147.9 28.7 42 106-153 536-577 (1012)
72 PRK09853 putative selenate red 99.5 5.1E-12 1.1E-16 145.8 27.4 42 106-153 538-579 (1019)
73 COG2081 Predicted flavoprotein 99.5 3E-13 6.6E-18 138.0 13.7 150 106-286 2-168 (408)
74 PF01266 DAO: FAD dependent ox 99.5 7.8E-12 1.7E-16 132.4 23.0 162 109-298 1-213 (358)
75 PLN02661 Putative thiazole syn 99.4 1E-11 2.2E-16 127.7 19.4 153 104-290 89-249 (357)
76 PRK00711 D-amino acid dehydrog 99.4 5.3E-11 1.2E-15 129.2 26.2 71 208-298 197-267 (416)
77 PF03486 HI0933_like: HI0933-l 99.4 2.1E-12 4.5E-17 137.7 13.3 145 108-286 1-167 (409)
78 TIGR01373 soxB sarcosine oxida 99.4 1.2E-10 2.6E-15 126.0 26.9 72 208-298 179-250 (407)
79 PRK12409 D-amino acid dehydrog 99.4 1.6E-10 3.6E-15 125.1 24.9 74 209-297 194-267 (410)
80 COG0579 Predicted dehydrogenas 99.4 1.3E-11 2.7E-16 130.4 15.5 171 106-299 2-222 (429)
81 KOG1335 Dihydrolipoamide dehyd 99.3 1.9E-12 4.1E-17 129.7 7.3 146 106-283 38-183 (506)
82 COG1249 Lpd Pyruvate/2-oxoglut 99.3 5.1E-12 1.1E-16 135.7 10.6 143 106-286 3-148 (454)
83 PRK11259 solA N-methyltryptoph 99.3 2.4E-10 5.1E-15 122.4 22.7 61 208-286 145-205 (376)
84 TIGR01377 soxA_mon sarcosine o 99.3 4.3E-10 9.2E-15 120.6 24.6 72 206-298 139-210 (380)
85 PF12831 FAD_oxidored: FAD dep 99.3 2E-12 4.4E-17 140.3 6.2 141 109-283 1-148 (428)
86 PRK11101 glpA sn-glycerol-3-ph 99.3 8.4E-10 1.8E-14 123.4 27.2 172 106-298 5-221 (546)
87 PRK11728 hydroxyglutarate oxid 99.3 2.8E-10 6E-15 122.6 22.3 167 107-298 2-214 (393)
88 PRK01747 mnmC bifunctional tRN 99.3 3E-10 6.5E-15 130.3 23.1 156 107-286 260-464 (662)
89 PLN00128 Succinate dehydrogena 99.3 1.3E-10 2.7E-15 131.4 18.5 167 104-287 47-252 (635)
90 PRK06481 fumarate reductase fl 99.3 7.5E-11 1.6E-15 130.7 16.2 173 104-296 58-261 (506)
91 PF00890 FAD_binding_2: FAD bi 99.3 6.4E-11 1.4E-15 128.7 15.3 161 109-286 1-204 (417)
92 TIGR01813 flavo_cyto_c flavocy 99.3 3.6E-11 7.9E-16 131.4 13.5 168 109-295 1-201 (439)
93 PRK08274 tricarballylate dehyd 99.3 1.3E-10 2.9E-15 127.9 17.7 195 106-319 3-229 (466)
94 PRK05192 tRNA uridine 5-carbox 99.2 5E-11 1.1E-15 131.0 13.3 149 106-285 3-157 (618)
95 PTZ00139 Succinate dehydrogena 99.2 2E-10 4.3E-15 129.8 18.3 166 104-286 26-230 (617)
96 PLN02464 glycerol-3-phosphate 99.2 4.9E-09 1.1E-13 118.7 29.3 76 208-296 228-304 (627)
97 PRK06467 dihydrolipoamide dehy 99.2 8.4E-11 1.8E-15 129.3 14.5 142 107-286 4-149 (471)
98 PRK08958 sdhA succinate dehydr 99.2 1.8E-10 3.9E-15 129.5 17.4 165 106-287 6-208 (588)
99 PRK07121 hypothetical protein; 99.2 2E-10 4.2E-15 127.3 17.4 72 211-295 176-248 (492)
100 PRK08275 putative oxidoreducta 99.2 1.1E-10 2.3E-15 131.0 15.3 170 103-287 5-202 (554)
101 PRK12266 glpD glycerol-3-phosp 99.2 4.3E-09 9.4E-14 116.7 27.6 66 209-286 152-217 (508)
102 TIGR01421 gluta_reduc_1 glutat 99.2 5.6E-11 1.2E-15 129.9 12.3 141 107-286 2-142 (450)
103 PRK07057 sdhA succinate dehydr 99.2 3E-10 6.5E-15 127.9 18.5 66 212-287 148-213 (591)
104 COG0665 DadA Glycine/D-amino a 99.2 8.4E-10 1.8E-14 118.6 21.2 70 206-296 150-220 (387)
105 PRK07804 L-aspartate oxidase; 99.2 2.5E-10 5.4E-15 127.5 17.4 170 104-287 13-212 (541)
106 PRK09078 sdhA succinate dehydr 99.2 3.2E-10 6.8E-15 128.0 18.4 66 211-286 148-213 (598)
107 PTZ00058 glutathione reductase 99.2 2.4E-11 5.1E-16 135.0 8.4 54 106-166 47-100 (561)
108 TIGR01424 gluta_reduc_2 glutat 99.2 1E-10 2.2E-15 127.9 13.2 142 107-286 2-143 (446)
109 PF13738 Pyr_redox_3: Pyridine 99.2 2.6E-11 5.7E-16 117.9 7.5 137 111-286 1-139 (203)
110 PRK06115 dihydrolipoamide dehy 99.2 1.2E-10 2.7E-15 127.9 13.3 55 107-167 3-57 (466)
111 PRK05976 dihydrolipoamide dehy 99.2 1.5E-10 3.3E-15 127.6 13.7 53 107-166 4-56 (472)
112 PLN02546 glutathione reductase 99.2 3.4E-10 7.4E-15 125.9 16.2 143 106-286 78-229 (558)
113 PF01134 GIDA: Glucose inhibit 99.2 1.7E-10 3.8E-15 120.4 12.9 144 109-283 1-150 (392)
114 PRK05249 soluble pyridine nucl 99.2 2.1E-10 4.5E-15 126.3 14.1 146 106-286 4-150 (461)
115 PRK06452 sdhA succinate dehydr 99.2 4.7E-10 1E-14 125.8 17.1 164 105-286 3-199 (566)
116 PRK06416 dihydrolipoamide dehy 99.2 2.3E-10 5E-15 125.9 14.1 54 106-166 3-56 (462)
117 PRK07573 sdhA succinate dehydr 99.2 3.6E-10 7.8E-15 128.1 15.9 62 215-287 173-234 (640)
118 PRK12845 3-ketosteroid-delta-1 99.2 2.3E-10 5E-15 127.8 13.7 71 212-296 217-288 (564)
119 PRK13369 glycerol-3-phosphate 99.2 1.6E-08 3.4E-13 112.3 28.1 66 208-286 151-216 (502)
120 PRK12835 3-ketosteroid-delta-1 99.2 5.2E-10 1.1E-14 125.8 16.4 71 213-296 214-285 (584)
121 TIGR03329 Phn_aa_oxid putative 99.2 3.6E-10 7.9E-15 124.1 14.8 62 206-286 177-238 (460)
122 PRK06370 mercuric reductase; V 99.2 2.5E-10 5.4E-15 125.6 13.5 54 106-166 4-57 (463)
123 PRK06175 L-aspartate oxidase; 99.2 1.4E-10 2.9E-15 126.0 10.9 161 106-286 3-190 (433)
124 PTZ00383 malate:quinone oxidor 99.1 4.8E-10 1E-14 122.7 15.1 72 207-298 206-283 (497)
125 PRK07251 pyridine nucleotide-d 99.1 3.9E-10 8.5E-15 123.2 14.3 52 107-164 3-55 (438)
126 PRK08205 sdhA succinate dehydr 99.1 9.8E-10 2.1E-14 123.8 17.6 67 211-287 139-208 (583)
127 PRK06116 glutathione reductase 99.1 2.2E-10 4.8E-15 125.5 12.1 52 107-165 4-55 (450)
128 COG0578 GlpA Glycerol-3-phosph 99.1 1.7E-08 3.8E-13 109.0 25.4 171 106-298 11-235 (532)
129 COG0492 TrxB Thioredoxin reduc 99.1 2.6E-10 5.7E-15 116.7 10.9 114 106-286 2-116 (305)
130 PF08491 SE: Squalene epoxidas 99.1 4.3E-09 9.4E-14 104.1 18.9 171 274-467 2-188 (276)
131 PRK05945 sdhA succinate dehydr 99.1 1.1E-09 2.3E-14 123.5 16.7 167 106-287 2-199 (575)
132 TIGR01320 mal_quin_oxido malat 99.1 1E-09 2.2E-14 120.5 16.1 79 206-298 172-250 (483)
133 PRK06263 sdhA succinate dehydr 99.1 1.1E-09 2.3E-14 122.8 16.6 166 104-286 4-198 (543)
134 PRK14727 putative mercuric red 99.1 7.2E-10 1.6E-14 122.3 14.7 60 101-166 10-69 (479)
135 PRK06069 sdhA succinate dehydr 99.1 1.5E-09 3.3E-14 122.4 17.5 167 104-287 2-202 (577)
136 TIGR01423 trypano_reduc trypan 99.1 2.9E-10 6.2E-15 125.0 11.1 57 106-167 2-66 (486)
137 PRK09231 fumarate reductase fl 99.1 2E-09 4.4E-14 121.0 17.3 166 106-287 3-198 (582)
138 TIGR01812 sdhA_frdA_Gneg succi 99.1 1.6E-09 3.6E-14 122.0 16.5 65 212-287 129-193 (566)
139 PRK08641 sdhA succinate dehydr 99.1 2.4E-09 5.3E-14 120.6 17.8 164 107-287 3-202 (589)
140 TIGR01176 fum_red_Fp fumarate 99.1 2.8E-09 6.1E-14 119.7 18.2 166 107-287 3-197 (580)
141 TIGR01292 TRX_reduct thioredox 99.1 9.5E-10 2.1E-14 113.7 13.4 113 108-286 1-113 (300)
142 PRK12839 hypothetical protein; 99.1 3E-09 6.4E-14 119.3 18.2 68 209-287 211-278 (572)
143 PLN02172 flavin-containing mon 99.1 1.2E-09 2.7E-14 119.0 14.7 153 107-285 10-173 (461)
144 PRK06327 dihydrolipoamide dehy 99.1 8.2E-10 1.8E-14 121.8 13.5 53 107-165 4-62 (475)
145 PRK12834 putative FAD-binding 99.1 7.5E-10 1.6E-14 124.1 13.3 181 106-295 3-236 (549)
146 PRK07803 sdhA succinate dehydr 99.1 2.5E-09 5.4E-14 121.3 17.6 166 104-286 5-214 (626)
147 COG2072 TrkA Predicted flavopr 99.1 2.8E-09 6E-14 115.7 17.2 161 105-337 6-170 (443)
148 PLN02507 glutathione reductase 99.1 3.7E-10 7.9E-15 124.9 10.4 55 106-166 24-87 (499)
149 PRK08010 pyridine nucleotide-d 99.1 1.2E-09 2.6E-14 119.5 14.2 52 107-164 3-55 (441)
150 PRK06854 adenylylsulfate reduc 99.1 8.1E-10 1.8E-14 124.8 13.0 164 104-286 8-196 (608)
151 PLN02815 L-aspartate oxidase 99.1 2.1E-09 4.5E-14 120.5 16.0 165 105-286 27-223 (594)
152 PRK05257 malate:quinone oxidor 99.1 4.7E-09 1E-13 115.3 18.3 79 206-298 177-256 (494)
153 TIGR00136 gidA glucose-inhibit 99.1 1E-09 2.2E-14 120.6 12.8 148 108-285 1-154 (617)
154 PRK12844 3-ketosteroid-delta-1 99.1 8.2E-10 1.8E-14 123.7 12.4 71 212-296 208-279 (557)
155 TIGR03364 HpnW_proposed FAD de 99.1 1.4E-09 3.1E-14 115.9 13.7 151 108-286 1-198 (365)
156 TIGR01438 TGR thioredoxin and 99.1 4.5E-10 9.8E-15 123.7 10.0 147 107-286 2-156 (484)
157 PRK08626 fumarate reductase fl 99.1 2.4E-09 5.2E-14 121.7 16.1 66 211-287 157-222 (657)
158 PRK07843 3-ketosteroid-delta-1 99.1 4.9E-09 1.1E-13 117.5 18.4 70 213-296 209-279 (557)
159 PRK08401 L-aspartate oxidase; 99.1 2.6E-09 5.6E-14 117.3 15.9 156 108-288 2-178 (466)
160 TIGR02053 MerA mercuric reduct 99.1 6.2E-10 1.3E-14 122.5 11.0 52 108-166 1-52 (463)
161 PRK14694 putative mercuric red 99.1 2.2E-09 4.8E-14 118.2 15.2 55 105-166 4-58 (468)
162 PRK12837 3-ketosteroid-delta-1 99.1 1.2E-09 2.7E-14 121.3 13.1 92 213-318 174-270 (513)
163 PRK07395 L-aspartate oxidase; 99.0 8.4E-10 1.8E-14 123.1 11.7 163 105-286 7-198 (553)
164 COG1148 HdrA Heterodisulfide r 99.0 1.4E-09 3.1E-14 112.5 12.2 54 562-629 555-608 (622)
165 PRK13748 putative mercuric red 99.0 1.8E-09 3.9E-14 121.8 14.5 54 106-166 97-150 (561)
166 TIGR00551 nadB L-aspartate oxi 99.0 2.9E-09 6.3E-14 117.7 15.7 161 107-287 2-191 (488)
167 PTZ00153 lipoamide dehydrogena 99.0 2.6E-09 5.6E-14 120.5 15.1 59 105-169 114-173 (659)
168 KOG2820 FAD-dependent oxidored 99.0 4.3E-09 9.3E-14 104.7 14.6 161 104-285 4-212 (399)
169 PRK15317 alkyl hydroperoxide r 99.0 1.8E-09 4E-14 120.2 13.3 115 105-286 209-323 (517)
170 PRK12843 putative FAD-binding 99.0 1.9E-09 4.1E-14 121.4 13.4 72 211-296 220-292 (578)
171 PRK13339 malate:quinone oxidor 99.0 5.6E-09 1.2E-13 114.0 16.3 79 206-298 178-257 (497)
172 PTZ00306 NADH-dependent fumara 99.0 1.9E-09 4.1E-14 130.1 13.9 178 104-296 406-633 (1167)
173 PRK06134 putative FAD-binding 99.0 4.3E-09 9.3E-14 118.6 15.8 66 210-288 215-281 (581)
174 KOG0405 Pyridine nucleotide-di 99.0 2.2E-10 4.9E-15 113.7 4.7 149 104-288 17-168 (478)
175 PRK12842 putative succinate de 99.0 3.9E-09 8.4E-14 119.0 15.4 65 212-289 214-279 (574)
176 PRK09077 L-aspartate oxidase; 99.0 6.5E-09 1.4E-13 116.1 16.8 166 105-287 6-209 (536)
177 PRK07818 dihydrolipoamide dehy 99.0 4E-09 8.6E-14 116.1 14.3 51 107-164 4-54 (466)
178 TIGR03452 mycothione_red mycot 99.0 7.7E-10 1.7E-14 121.1 8.3 51 107-166 2-52 (452)
179 PRK08071 L-aspartate oxidase; 99.0 4.3E-09 9.3E-14 116.7 14.3 160 107-286 3-191 (510)
180 TIGR01350 lipoamide_DH dihydro 99.0 3.9E-09 8.4E-14 116.2 13.9 51 107-164 1-51 (461)
181 TIGR01811 sdhA_Bsu succinate d 99.0 7.6E-09 1.7E-13 116.7 16.4 66 212-287 129-198 (603)
182 TIGR02061 aprA adenosine phosp 99.0 3.3E-09 7.1E-14 119.0 12.6 161 109-286 1-192 (614)
183 PRK07846 mycothione reductase; 99.0 1.7E-09 3.7E-14 118.2 10.1 52 107-167 1-52 (451)
184 PRK06292 dihydrolipoamide dehy 99.0 5.3E-09 1.1E-13 115.1 13.6 53 106-165 2-54 (460)
185 PTZ00052 thioredoxin reductase 99.0 2.6E-09 5.6E-14 118.2 11.0 53 107-165 5-65 (499)
186 TIGR03140 AhpF alkyl hydropero 99.0 6.6E-09 1.4E-13 115.6 14.2 114 105-285 210-323 (515)
187 TIGR03143 AhpF_homolog putativ 98.9 7.7E-09 1.7E-13 116.0 14.4 112 107-286 4-115 (555)
188 KOG1399 Flavin-containing mono 98.9 5E-09 1.1E-13 112.3 12.0 144 106-284 5-152 (448)
189 PRK06912 acoL dihydrolipoamide 98.9 2.4E-09 5.3E-14 117.5 9.8 53 109-168 2-54 (458)
190 TIGR02734 crtI_fam phytoene de 98.9 5.4E-07 1.2E-11 100.4 28.3 61 212-288 219-279 (502)
191 TIGR00275 flavoprotein, HI0933 98.9 1.2E-08 2.6E-13 109.9 13.8 147 111-285 1-160 (400)
192 PRK07845 flavoprotein disulfid 98.9 1.3E-08 2.9E-13 111.8 13.6 148 109-286 3-152 (466)
193 PF00743 FMO-like: Flavin-bind 98.9 1.5E-08 3.3E-13 112.1 13.7 144 109-286 3-151 (531)
194 TIGR02485 CobZ_N-term precorri 98.9 3.9E-08 8.4E-13 107.3 16.0 67 211-291 122-189 (432)
195 PRK07233 hypothetical protein; 98.9 1.4E-06 3E-11 95.1 28.2 38 109-152 1-38 (434)
196 KOG2853 Possible oxidoreductas 98.9 2E-07 4.3E-12 92.8 19.0 179 106-298 85-330 (509)
197 KOG2404 Fumarate reductase, fl 98.8 7.7E-09 1.7E-13 101.9 8.1 163 109-298 11-219 (477)
198 PRK07512 L-aspartate oxidase; 98.8 4.4E-08 9.6E-13 108.8 14.8 63 211-286 135-198 (513)
199 PRK13800 putative oxidoreducta 98.8 4.3E-08 9.3E-13 115.9 14.7 166 104-287 10-207 (897)
200 COG1142 HycB Fe-S-cluster-cont 98.8 2.8E-09 6E-14 96.9 3.3 54 567-629 50-103 (165)
201 PRK13977 myosin-cross-reactive 98.8 1.2E-07 2.7E-12 103.6 16.0 65 212-286 226-294 (576)
202 PF14697 Fer4_21: 4Fe-4S diclu 98.8 3.2E-09 7E-14 80.3 2.5 55 566-627 4-59 (59)
203 PRK10262 thioredoxin reductase 98.8 8.2E-08 1.8E-12 100.5 14.0 114 106-286 5-118 (321)
204 KOG2852 Possible oxidoreductas 98.8 2.8E-07 6.1E-12 89.9 16.3 166 107-286 10-209 (380)
205 PF07992 Pyr_redox_2: Pyridine 98.8 1.6E-08 3.4E-13 98.0 7.9 117 109-286 1-123 (201)
206 PLN02612 phytoene desaturase 98.8 4.9E-07 1.1E-11 101.6 20.8 56 213-283 309-364 (567)
207 TIGR02730 carot_isom carotene 98.8 1.4E-07 3.1E-12 104.6 16.1 63 211-289 228-290 (493)
208 PF06039 Mqo: Malate:quinone o 98.7 2.9E-07 6.3E-12 96.6 16.5 79 207-299 176-255 (488)
209 COG1053 SdhA Succinate dehydro 98.7 7.2E-08 1.6E-12 106.8 12.3 166 105-286 4-203 (562)
210 KOG2960 Protein involved in th 98.7 2.8E-08 6.1E-13 92.3 7.2 155 107-289 76-238 (328)
211 TIGR02731 phytoene_desat phyto 98.7 5.7E-06 1.2E-10 90.9 26.5 63 212-284 213-275 (453)
212 COG1233 Phytoene dehydrogenase 98.7 1.5E-07 3.4E-12 103.8 14.0 57 211-283 223-279 (487)
213 PRK12779 putative bifunctional 98.7 3.4E-08 7.4E-13 116.1 9.2 98 107-284 306-403 (944)
214 PF00070 Pyr_redox: Pyridine n 98.7 2.2E-07 4.7E-12 75.7 11.1 78 110-253 2-79 (80)
215 TIGR00562 proto_IX_ox protopor 98.7 8.4E-06 1.8E-10 89.9 27.2 42 108-153 3-46 (462)
216 COG1143 NuoI Formate hydrogenl 98.7 7.6E-09 1.7E-13 95.6 2.4 56 566-627 53-114 (172)
217 COG3380 Predicted NAD/FAD-depe 98.7 1.3E-07 2.9E-12 91.5 10.9 142 109-284 3-159 (331)
218 PF13247 Fer4_11: 4Fe-4S diclu 98.7 4.8E-09 1.1E-13 87.9 0.9 59 567-632 6-64 (98)
219 COG1144 Pyruvate:ferredoxin ox 98.7 1.2E-08 2.6E-13 81.2 2.5 56 565-629 32-87 (91)
220 PRK12416 protoporphyrinogen ox 98.6 6E-06 1.3E-10 91.1 23.9 45 109-153 3-47 (463)
221 PF13434 K_oxygenase: L-lysine 98.6 1.9E-08 4.1E-13 105.4 3.9 154 107-287 2-161 (341)
222 COG0445 GidA Flavin-dependent 98.6 3.4E-08 7.4E-13 104.5 5.6 144 107-284 4-157 (621)
223 PLN02576 protoporphyrinogen ox 98.6 3E-05 6.5E-10 86.3 29.2 42 107-153 12-53 (496)
224 KOG0404 Thioredoxin reductase 98.6 9.1E-08 2E-12 89.7 7.1 117 107-285 8-124 (322)
225 TIGR02732 zeta_caro_desat caro 98.6 1.5E-05 3.3E-10 87.8 25.8 38 109-152 1-38 (474)
226 PRK12831 putative oxidoreducta 98.6 8.9E-08 1.9E-12 105.0 7.9 40 106-151 139-178 (464)
227 PRK07208 hypothetical protein; 98.6 8.1E-07 1.8E-11 98.4 15.4 41 106-152 3-43 (479)
228 COG1231 Monoamine oxidase [Ami 98.6 4E-06 8.8E-11 87.8 19.3 42 105-152 5-46 (450)
229 TIGR01372 soxA sarcosine oxida 98.6 4.5E-07 9.7E-12 108.2 14.0 122 106-285 162-286 (985)
230 COG2509 Uncharacterized FAD-de 98.6 1.2E-06 2.6E-11 91.2 15.0 84 211-314 172-256 (486)
231 PRK09897 hypothetical protein; 98.6 6.8E-07 1.5E-11 98.7 14.1 40 108-151 2-41 (534)
232 COG1249 Lpd Pyruvate/2-oxoglut 98.6 4.5E-07 9.7E-12 97.8 12.4 113 107-298 173-285 (454)
233 KOG2844 Dimethylglycine dehydr 98.6 2.6E-07 5.6E-12 99.5 10.0 77 202-298 177-253 (856)
234 PLN02676 polyamine oxidase 98.6 1.1E-05 2.4E-10 89.0 23.4 40 107-152 26-66 (487)
235 PLN02487 zeta-carotene desatur 98.6 3.6E-05 7.8E-10 85.9 27.4 60 213-284 296-359 (569)
236 COG1146 Ferredoxin [Energy pro 98.6 5.8E-08 1.3E-12 76.3 3.9 59 566-631 6-64 (68)
237 PTZ00363 rab-GDP dissociation 98.5 2.4E-06 5.2E-11 92.5 16.8 60 211-285 231-290 (443)
238 PF13454 NAD_binding_9: FAD-NA 98.5 3.1E-07 6.8E-12 85.2 8.4 142 111-283 1-155 (156)
239 PRK12814 putative NADPH-depend 98.5 1.2E-06 2.6E-11 100.1 14.8 34 107-146 323-357 (652)
240 TIGR02352 thiamin_ThiO glycine 98.5 8.5E-06 1.8E-10 85.7 19.4 64 206-286 131-194 (337)
241 KOG0042 Glycerol-3-phosphate d 98.5 1.6E-07 3.4E-12 98.9 5.8 171 105-291 65-293 (680)
242 COG0029 NadB Aspartate oxidase 98.5 1.3E-06 2.8E-11 92.1 12.0 66 211-287 132-198 (518)
243 PRK09564 coenzyme A disulfide 98.5 1E-06 2.2E-11 96.6 11.9 113 109-286 2-116 (444)
244 COG3634 AhpF Alkyl hydroperoxi 98.5 2.9E-07 6.3E-12 91.8 6.6 115 105-284 209-324 (520)
245 PRK05329 anaerobic glycerol-3- 98.5 3.1E-06 6.7E-11 90.9 15.1 61 211-285 258-318 (422)
246 PRK12778 putative bifunctional 98.5 3.1E-07 6.8E-12 106.9 8.0 40 106-151 430-469 (752)
247 TIGR03378 glycerol3P_GlpB glyc 98.4 4E-06 8.8E-11 89.0 15.6 64 209-286 260-324 (419)
248 PF13450 NAD_binding_8: NAD(P) 98.4 2.5E-07 5.3E-12 72.6 4.8 35 112-152 1-35 (68)
249 TIGR01316 gltA glutamate synth 98.4 4.3E-07 9.4E-12 99.3 7.7 40 106-151 132-171 (449)
250 PRK12775 putative trifunctiona 98.4 3.5E-07 7.5E-12 108.7 7.1 38 107-150 430-467 (1006)
251 PRK11749 dihydropyrimidine deh 98.4 8.1E-07 1.8E-11 97.6 9.0 39 106-150 139-177 (457)
252 PLN02852 ferredoxin-NADP+ redu 98.4 9.8E-07 2.1E-11 96.3 9.4 41 107-151 26-66 (491)
253 PRK04965 NADH:flavorubredoxin 98.4 2.7E-06 5.9E-11 91.1 12.4 110 107-286 2-112 (377)
254 PRK09754 phenylpropionate diox 98.4 2.3E-06 4.9E-11 92.3 11.5 110 108-286 4-113 (396)
255 PRK04965 NADH:flavorubredoxin 98.4 5.7E-06 1.2E-10 88.6 14.3 109 108-298 142-250 (377)
256 PRK14989 nitrite reductase sub 98.4 3.9E-06 8.4E-11 98.0 13.8 111 108-298 146-256 (847)
257 PF00732 GMC_oxred_N: GMC oxid 98.3 1.9E-06 4.1E-11 89.0 10.1 74 213-297 194-268 (296)
258 TIGR01318 gltD_gamma_fam gluta 98.3 9.6E-07 2.1E-11 97.0 8.2 39 106-150 140-178 (467)
259 PRK12769 putative oxidoreducta 98.3 8.1E-07 1.8E-11 101.8 7.9 40 106-151 326-365 (654)
260 KOG2665 Predicted FAD-dependen 98.3 2.5E-06 5.4E-11 84.3 10.0 172 105-298 46-267 (453)
261 PRK09754 phenylpropionate diox 98.3 6.2E-06 1.4E-10 88.9 14.3 108 108-298 145-252 (396)
262 COG0437 HybA Fe-S-cluster-cont 98.3 4.2E-07 9.1E-12 85.9 4.1 57 567-630 66-122 (203)
263 PRK12810 gltD glutamate syntha 98.3 1.1E-06 2.3E-11 97.0 8.0 40 106-151 142-181 (471)
264 PRK05335 tRNA (uracil-5-)-meth 98.3 1.8E-06 3.9E-11 91.5 9.2 36 108-149 3-38 (436)
265 PRK13512 coenzyme A disulfide 98.3 2.8E-06 6.1E-11 92.8 11.0 37 109-149 3-39 (438)
266 PLN03000 amine oxidase 98.3 0.00015 3.3E-09 83.3 24.9 41 106-152 183-223 (881)
267 TIGR02462 pyranose_ox pyranose 98.3 9.8E-06 2.1E-10 89.4 14.8 38 108-151 1-38 (544)
268 CHL00065 psaC photosystem I su 98.3 1.8E-07 3.9E-12 76.4 0.9 58 566-629 7-67 (81)
269 KOG4254 Phytoene desaturase [C 98.3 1.6E-06 3.4E-11 89.7 7.6 61 211-287 263-323 (561)
270 PRK08348 NADH-plastoquinone ox 98.3 5E-07 1.1E-11 79.7 3.4 59 561-629 36-94 (120)
271 KOG4716 Thioredoxin reductase 98.3 8.5E-06 1.8E-10 81.3 12.3 54 105-164 17-78 (503)
272 TIGR03169 Nterm_to_SelD pyridi 98.3 3.2E-06 7E-11 90.1 10.3 108 109-286 1-108 (364)
273 PRK12814 putative NADPH-depend 98.3 1.4E-06 3E-11 99.6 7.8 39 107-151 193-231 (652)
274 TIGR01660 narH nitrate reducta 98.3 2.1E-06 4.5E-11 89.6 8.2 58 566-630 179-236 (492)
275 PRK06370 mercuric reductase; V 98.2 1.7E-05 3.6E-10 87.5 15.2 102 108-287 172-273 (463)
276 PRK05976 dihydrolipoamide dehy 98.2 1E-05 2.3E-10 89.3 13.5 103 108-287 181-283 (472)
277 TIGR03478 DMSO_red_II_bet DMSO 98.2 7.7E-07 1.7E-11 89.3 3.9 58 566-630 127-184 (321)
278 PRK06116 glutathione reductase 98.2 1.2E-05 2.6E-10 88.3 13.5 99 108-286 168-266 (450)
279 COG1252 Ndh NADH dehydrogenase 98.2 7.3E-06 1.6E-10 86.5 10.9 101 107-286 155-263 (405)
280 TIGR01350 lipoamide_DH dihydro 98.2 1.4E-05 2.9E-10 88.2 13.5 102 108-288 171-272 (461)
281 TIGR03377 glycerol3P_GlpA glyc 98.2 0.00016 3.4E-09 80.8 22.0 78 207-298 123-200 (516)
282 TIGR03197 MnmC_Cterm tRNA U-34 98.2 4.7E-05 1E-09 81.7 17.2 62 207-286 130-191 (381)
283 PRK12770 putative glutamate sy 98.2 4.1E-06 9E-11 88.8 8.6 38 107-150 18-55 (352)
284 TIGR00137 gid_trmFO tRNA:m(5)U 98.2 1E-05 2.2E-10 86.3 11.5 37 108-150 1-37 (433)
285 TIGR01421 gluta_reduc_1 glutat 98.2 1.8E-05 3.9E-10 86.7 13.7 99 108-286 167-266 (450)
286 PRK05249 soluble pyridine nucl 98.2 1.5E-05 3.2E-10 87.9 13.0 99 108-287 176-274 (461)
287 TIGR02936 fdxN_nitrog ferredox 98.2 6.2E-07 1.3E-11 75.0 1.5 58 565-628 18-90 (91)
288 TIGR01582 FDH-beta formate deh 98.2 1.5E-06 3.2E-11 87.6 4.5 63 560-630 82-146 (283)
289 TIGR02374 nitri_red_nirB nitri 98.2 5.3E-06 1.1E-10 96.8 9.6 109 110-286 1-109 (785)
290 COG3075 GlpB Anaerobic glycero 98.2 1.3E-05 2.7E-10 80.0 10.6 60 211-284 257-316 (421)
291 PRK06416 dihydrolipoamide dehy 98.2 1.8E-05 3.9E-10 87.2 13.2 102 108-287 173-274 (462)
292 PF13187 Fer4_9: 4Fe-4S diclus 98.2 4.4E-07 9.6E-12 68.0 0.2 50 570-625 2-55 (55)
293 PRK06912 acoL dihydrolipoamide 98.2 3.2E-05 7E-10 85.0 14.9 100 108-287 171-270 (458)
294 PRK14989 nitrite reductase sub 98.2 9.5E-06 2.1E-10 94.8 11.2 111 108-286 4-114 (847)
295 PRK12809 putative oxidoreducta 98.1 3.8E-06 8.2E-11 96.0 7.7 39 107-151 310-348 (639)
296 TIGR02053 MerA mercuric reduct 98.1 2.3E-05 4.9E-10 86.4 13.6 102 108-287 167-268 (463)
297 PRK07251 pyridine nucleotide-d 98.1 2.6E-05 5.6E-10 85.3 13.6 98 108-287 158-255 (438)
298 PTZ00318 NADH dehydrogenase-li 98.1 1E-05 2.2E-10 88.1 10.2 117 107-286 10-126 (424)
299 COG3573 Predicted oxidoreducta 98.1 4.9E-05 1.1E-09 75.9 13.7 41 105-151 3-45 (552)
300 TIGR02374 nitri_red_nirB nitri 98.1 2.6E-05 5.6E-10 91.1 14.0 109 108-298 141-249 (785)
301 PRK09564 coenzyme A disulfide 98.1 3.5E-05 7.5E-10 84.5 14.3 108 108-298 150-257 (444)
302 PRK09624 porD pyuvate ferredox 98.1 1.2E-06 2.6E-11 74.9 2.2 53 566-628 49-101 (105)
303 PRK07818 dihydrolipoamide dehy 98.1 2.3E-05 5E-10 86.4 12.8 103 108-287 173-275 (466)
304 COG0493 GltD NADPH-dependent g 98.1 3.7E-06 8E-11 90.9 6.3 41 108-154 124-164 (457)
305 PRK06115 dihydrolipoamide dehy 98.1 3.4E-05 7.3E-10 85.0 13.9 104 108-287 175-278 (466)
306 PRK08222 hydrogenase 4 subunit 98.1 2.1E-06 4.6E-11 81.2 3.8 58 566-629 36-94 (181)
307 COG1232 HemY Protoporphyrinoge 98.1 2E-05 4.3E-10 84.5 11.5 40 109-152 2-41 (444)
308 TIGR03048 PS_I_psaC photosyste 98.1 1.2E-06 2.7E-11 71.2 1.8 61 566-632 6-69 (80)
309 TIGR01317 GOGAT_sm_gam glutama 98.1 6.2E-06 1.4E-10 91.0 8.0 39 107-151 143-181 (485)
310 PTZ00188 adrenodoxin reductase 98.1 8E-06 1.7E-10 88.0 8.4 40 107-152 39-79 (506)
311 PRK09626 oorD 2-oxoglutarate-a 98.1 2.4E-06 5.2E-11 73.1 3.5 61 562-629 11-74 (103)
312 PLN00071 photosystem I subunit 98.1 1.4E-06 3E-11 71.1 1.8 62 566-633 7-71 (81)
313 TIGR02179 PorD_KorD 2-oxoacid: 98.1 3.5E-06 7.6E-11 68.2 4.0 53 566-628 23-75 (78)
314 TIGR01424 gluta_reduc_2 glutat 98.1 3.3E-05 7.2E-10 84.6 12.9 98 108-286 167-264 (446)
315 PF12838 Fer4_7: 4Fe-4S diclus 98.1 3.6E-07 7.7E-12 67.7 -1.8 49 570-624 2-52 (52)
316 KOG3256 NADH:ubiquinone oxidor 98.1 1.1E-06 2.4E-11 77.6 1.0 55 566-626 109-168 (212)
317 PTZ00058 glutathione reductase 98.1 3.4E-05 7.4E-10 86.2 12.9 100 108-286 238-337 (561)
318 COG0446 HcaD Uncharacterized N 98.1 3.1E-05 6.8E-10 83.6 12.5 102 107-286 136-238 (415)
319 KOG0029 Amine oxidase [Seconda 98.1 3.9E-06 8.6E-11 91.8 5.2 42 105-152 13-54 (501)
320 PF13237 Fer4_10: 4Fe-4S diclu 98.1 1.9E-06 4.2E-11 63.7 1.9 47 566-621 5-52 (52)
321 PRK12387 formate hydrogenlyase 98.0 3.2E-06 7E-11 80.2 3.9 58 566-629 36-94 (180)
322 COG3486 IucD Lysine/ornithine 98.0 1.9E-05 4E-10 81.5 9.5 152 106-291 4-163 (436)
323 PRK14694 putative mercuric red 98.0 7E-05 1.5E-09 82.6 14.8 97 108-287 179-275 (468)
324 PLN02507 glutathione reductase 98.0 4.8E-05 1E-09 84.4 13.4 99 108-287 204-302 (499)
325 TIGR02060 aprB adenosine phosp 98.0 2E-06 4.3E-11 76.4 1.9 58 566-629 6-66 (132)
326 TIGR03385 CoA_CoA_reduc CoA-di 98.0 5.6E-05 1.2E-09 82.4 13.7 107 108-298 138-244 (427)
327 PRK07845 flavoprotein disulfid 98.0 5.2E-05 1.1E-09 83.5 13.4 99 108-287 178-276 (466)
328 PRK09625 porD pyruvate flavodo 98.0 1.8E-06 3.9E-11 77.3 1.5 54 566-629 57-110 (133)
329 PRK09623 vorD 2-ketoisovalerat 98.0 3.9E-06 8.5E-11 71.9 3.4 54 565-628 48-101 (105)
330 PF00037 Fer4: 4Fe-4S binding 98.0 2.3E-06 5E-11 51.9 1.3 24 603-626 1-24 (24)
331 PRK14727 putative mercuric red 98.0 8.2E-05 1.8E-09 82.3 14.6 97 108-287 189-285 (479)
332 TIGR01423 trypano_reduc trypan 98.0 5.1E-05 1.1E-09 83.7 12.8 103 108-287 188-290 (486)
333 TIGR03149 cyt_nit_nrfC cytochr 98.0 3.6E-06 7.9E-11 82.7 3.2 57 566-629 90-146 (225)
334 COG4529 Uncharacterized protei 98.0 4E-05 8.6E-10 81.2 11.0 158 108-289 2-168 (474)
335 KOG2311 NAD/FAD-utilizing prot 98.0 1.1E-05 2.3E-10 84.1 6.5 138 106-284 27-185 (679)
336 PRK13984 putative oxidoreducta 98.0 1.4E-05 3.1E-10 90.9 8.3 39 106-150 282-320 (604)
337 PRK06567 putative bifunctional 98.0 1.2E-05 2.5E-10 92.8 7.4 38 106-149 382-419 (1028)
338 PRK05888 NADH dehydrogenase su 98.0 7.5E-06 1.6E-10 76.5 4.8 55 567-627 57-116 (164)
339 PRK06273 ferredoxin; Provision 98.0 2.8E-06 6.1E-11 78.6 1.7 56 566-627 47-110 (165)
340 PRK02651 photosystem I subunit 98.0 3.4E-06 7.4E-11 68.8 2.0 58 566-629 7-67 (81)
341 COG1245 Predicted ATPase, RNas 98.0 5E-06 1.1E-10 86.3 3.6 63 561-631 4-74 (591)
342 PRK06327 dihydrolipoamide dehy 98.0 7.3E-05 1.6E-09 82.6 13.1 103 108-287 184-286 (475)
343 PRK08010 pyridine nucleotide-d 98.0 7.8E-05 1.7E-09 81.6 13.2 98 108-287 159-256 (441)
344 KOG1336 Monodehydroascorbate/f 98.0 5.7E-05 1.2E-09 79.5 11.3 102 107-286 213-314 (478)
345 PRK13512 coenzyme A disulfide 98.0 5.4E-05 1.2E-09 82.7 11.7 95 108-287 149-243 (438)
346 TIGR00031 UDP-GALP_mutase UDP- 97.9 9.2E-06 2E-10 85.9 5.2 40 108-153 2-41 (377)
347 TIGR01944 rnfB electron transp 97.9 6.1E-06 1.3E-10 77.0 3.2 57 562-628 107-163 (165)
348 PRK07846 mycothione reductase; 97.9 9.1E-05 2E-09 81.2 12.9 98 108-287 167-264 (451)
349 PLN02546 glutathione reductase 97.9 8.1E-05 1.8E-09 83.3 12.6 100 108-287 253-352 (558)
350 TIGR00403 ndhI NADH-plastoquin 97.9 4.8E-06 1E-10 78.9 2.3 57 566-628 60-122 (183)
351 PLN02785 Protein HOTHEAD 97.9 0.00021 4.6E-09 80.4 15.8 67 219-298 227-301 (587)
352 PTZ00153 lipoamide dehydrogena 97.9 0.00014 2.9E-09 82.7 14.2 115 108-286 313-428 (659)
353 PRK11883 protoporphyrinogen ox 97.9 1.1E-05 2.4E-10 88.6 5.1 39 109-153 2-42 (451)
354 COG1252 Ndh NADH dehydrogenase 97.9 3.9E-05 8.4E-10 81.1 8.9 109 107-286 3-112 (405)
355 TIGR02733 desat_CrtD C-3',4' d 97.9 1.1E-05 2.4E-10 89.6 5.2 63 211-284 231-293 (492)
356 PRK05675 sdhA succinate dehydr 97.9 0.0002 4.3E-09 80.7 14.9 67 211-287 125-191 (570)
357 PLN02268 probable polyamine ox 97.9 1.2E-05 2.6E-10 87.9 5.1 39 109-153 2-40 (435)
358 TIGR01971 NuoI NADH-quinone ox 97.9 7.8E-06 1.7E-10 72.5 2.8 56 567-628 42-102 (122)
359 PF12837 Fer4_6: 4Fe-4S bindin 97.9 1.9E-06 4.1E-11 52.0 -0.8 23 603-625 2-24 (24)
360 PTZ00318 NADH dehydrogenase-li 97.9 8.2E-05 1.8E-09 80.9 11.3 99 109-286 175-281 (424)
361 PTZ00052 thioredoxin reductase 97.9 0.00014 3E-09 80.7 13.3 97 108-286 183-279 (499)
362 PRK14993 tetrathionate reducta 97.9 5.3E-06 1.2E-10 82.3 1.7 57 566-630 96-152 (244)
363 PRK13748 putative mercuric red 97.9 0.00014 3.1E-09 82.2 13.3 97 108-287 271-367 (561)
364 PRK10330 formate dehydrogenase 97.8 8.6E-06 1.9E-10 77.5 2.8 53 567-628 55-107 (181)
365 PRK06467 dihydrolipoamide dehy 97.8 0.00016 3.5E-09 79.7 13.0 103 108-288 175-277 (471)
366 COG0562 Glf UDP-galactopyranos 97.8 1.8E-05 4E-10 78.8 4.9 39 108-152 2-40 (374)
367 COG2907 Predicted NAD/FAD-bind 97.8 0.00011 2.3E-09 74.1 10.3 39 107-152 8-46 (447)
368 KOG1335 Dihydrolipoamide dehyd 97.8 9.2E-05 2E-09 75.4 9.7 107 107-288 211-317 (506)
369 PRK10262 thioredoxin reductase 97.8 0.00014 3E-09 76.1 11.6 103 108-286 147-249 (321)
370 TIGR03140 AhpF alkyl hydropero 97.8 0.00014 3.1E-09 81.1 12.3 98 108-286 353-451 (515)
371 TIGR03452 mycothione_red mycot 97.8 0.0002 4.4E-09 78.5 13.2 98 108-287 170-267 (452)
372 TIGR01438 TGR thioredoxin and 97.8 0.00019 4.2E-09 79.3 13.0 100 109-287 182-281 (484)
373 TIGR01316 gltA glutamate synth 97.8 0.00015 3.2E-09 79.5 12.0 111 108-286 273-388 (449)
374 PRK10194 ferredoxin-type prote 97.8 1.5E-05 3.2E-10 74.4 3.4 52 580-631 110-161 (163)
375 PLN02568 polyamine oxidase 97.8 2.6E-05 5.6E-10 86.9 5.5 46 106-152 4-49 (539)
376 TIGR02066 dsrB sulfite reducta 97.8 6.7E-06 1.5E-10 85.6 0.7 55 568-626 178-232 (341)
377 PRK09898 hypothetical protein; 97.8 2.5E-05 5.5E-10 75.9 4.6 56 566-628 119-174 (208)
378 PRK06292 dihydrolipoamide dehy 97.8 0.00033 7.2E-09 77.1 13.9 102 108-288 170-271 (460)
379 PRK05113 electron transport co 97.8 1.1E-05 2.3E-10 77.1 1.7 57 563-629 109-165 (191)
380 TIGR02951 DMSO_dmsB DMSO reduc 97.8 1.8E-05 4E-10 73.7 3.3 58 567-631 61-118 (161)
381 PRK06991 ferredoxin; Provision 97.8 1.2E-05 2.5E-10 80.6 2.0 54 565-628 82-135 (270)
382 COG1145 NapF Ferredoxin [Energ 97.7 1.3E-05 2.9E-10 67.9 2.1 60 565-630 26-85 (99)
383 COG1149 MinD superfamily P-loo 97.7 1.3E-05 2.9E-10 78.3 2.2 54 566-629 67-120 (284)
384 TIGR00402 napF ferredoxin-type 97.7 1.6E-05 3.4E-10 67.7 2.4 53 566-626 32-84 (101)
385 KOG3923 D-aspartate oxidase [A 97.7 0.00073 1.6E-08 66.9 14.0 42 107-148 3-45 (342)
386 TIGR02163 napH_ ferredoxin-typ 97.7 1.8E-05 3.9E-10 79.4 2.9 59 562-628 195-254 (255)
387 TIGR02494 PFLE_PFLC glycyl-rad 97.7 8.6E-06 1.9E-10 84.1 0.6 59 564-628 44-102 (295)
388 PRK10882 hydrogenase 2 protein 97.7 1.2E-05 2.6E-10 82.8 1.5 56 567-629 109-164 (328)
389 COG3349 Uncharacterized conser 97.7 3.1E-05 6.8E-10 82.8 4.7 40 109-154 2-41 (485)
390 PRK07118 ferredoxin; Validated 97.7 1.9E-05 4.2E-10 79.9 3.0 55 567-632 212-266 (280)
391 PRK13409 putative ATPase RIL; 97.7 2.2E-05 4.8E-10 88.4 3.7 62 562-631 4-73 (590)
392 PRK12831 putative oxidoreducta 97.7 0.00025 5.4E-09 78.0 11.8 111 108-286 282-397 (464)
393 TIGR03224 benzo_boxA benzoyl-C 97.7 1.6E-05 3.5E-10 85.5 2.4 51 566-627 8-58 (411)
394 PRK15317 alkyl hydroperoxide r 97.7 0.00025 5.5E-09 79.2 12.0 98 108-286 352-450 (517)
395 COG2768 Uncharacterized Fe-S c 97.7 1.5E-05 3.2E-10 78.3 1.7 52 566-629 191-244 (354)
396 PRK08764 ferredoxin; Provision 97.7 2.6E-05 5.7E-10 70.1 2.8 57 562-628 79-135 (135)
397 TIGR01292 TRX_reduct thioredox 97.6 0.00045 9.7E-09 71.2 12.2 97 108-286 142-239 (300)
398 TIGR03287 methan_mark_16 putat 97.6 3.2E-05 7E-10 80.5 2.6 54 566-631 300-353 (391)
399 TIGR02700 flavo_MJ0208 archaeo 97.6 2.4E-05 5.3E-10 77.5 1.7 50 566-626 146-195 (234)
400 KOG0399 Glutamate synthase [Am 97.6 0.00011 2.4E-09 83.3 6.9 39 107-151 1785-1823(2142)
401 PRK09477 napH quinol dehydroge 97.6 3.4E-05 7.4E-10 78.2 2.6 56 565-628 205-262 (271)
402 CHL00014 ndhI NADH dehydrogena 97.6 2.8E-05 6E-10 72.7 1.5 57 566-628 57-119 (167)
403 COG1251 NirB NAD(P)H-nitrite r 97.6 0.00024 5.2E-09 78.5 8.7 154 61-299 102-255 (793)
404 PF12797 Fer4_2: 4Fe-4S bindin 97.6 2.4E-05 5.3E-10 45.4 0.6 21 602-622 2-22 (22)
405 PRK12769 putative oxidoreducta 97.5 5.3E-05 1.1E-09 87.0 3.9 56 566-630 52-107 (654)
406 PRK14028 pyruvate ferredoxin o 97.5 3E-05 6.5E-10 80.5 1.7 57 566-628 245-309 (312)
407 TIGR03169 Nterm_to_SelD pyridi 97.5 0.0007 1.5E-08 72.1 12.2 99 108-286 146-244 (364)
408 PRK12770 putative glutamate sy 97.5 0.00052 1.1E-08 72.8 10.5 109 108-286 173-287 (352)
409 TIGR02912 sulfite_red_C sulfit 97.5 4E-05 8.7E-10 79.6 1.4 50 566-626 167-219 (314)
410 PLN02529 lysine-specific histo 97.5 0.00013 2.9E-09 83.3 5.5 41 106-152 159-199 (738)
411 KOG1276 Protoporphyrinogen oxi 97.4 0.00016 3.4E-09 75.0 5.0 45 106-154 10-54 (491)
412 PRK12810 gltD glutamate syntha 97.4 0.0011 2.4E-08 73.2 11.9 119 108-286 282-401 (471)
413 PLN02328 lysine-specific histo 97.4 0.00016 3.5E-09 83.1 5.3 41 106-152 237-277 (808)
414 TIGR00397 mauM_napG MauM/NapG 97.4 0.00015 3.3E-09 70.5 4.2 61 565-631 128-200 (213)
415 PRK11749 dihydropyrimidine deh 97.4 0.00096 2.1E-08 73.4 11.1 110 108-286 274-388 (457)
416 PRK02106 choline dehydrogenase 97.4 0.00018 3.8E-09 81.3 5.0 61 224-298 213-273 (560)
417 PRK12809 putative oxidoreducta 97.3 8.8E-05 1.9E-09 84.8 1.9 54 566-628 52-105 (639)
418 TIGR02512 Fe_only_hydrog hydro 97.3 5.9E-05 1.3E-09 80.3 0.2 57 566-628 5-70 (374)
419 PRK08318 dihydropyrimidine deh 97.3 0.00016 3.4E-09 78.5 3.4 59 566-632 340-402 (420)
420 PRK09476 napG quinol dehydroge 97.3 0.00013 2.8E-09 72.8 2.4 69 565-639 134-220 (254)
421 TIGR00397 mauM_napG MauM/NapG 97.3 0.0002 4.4E-09 69.6 3.6 61 567-631 90-161 (213)
422 PF06100 Strep_67kDa_ant: Stre 97.3 0.0071 1.5E-07 64.9 15.3 43 108-152 3-45 (500)
423 TIGR02176 pyruv_ox_red pyruvat 97.3 0.00013 2.9E-09 87.7 2.7 59 565-629 680-762 (1165)
424 KOG1800 Ferredoxin/adrenodoxin 97.2 0.00086 1.9E-08 68.6 7.4 40 108-151 21-60 (468)
425 PRK12778 putative bifunctional 97.2 0.0019 4.1E-08 75.5 11.6 111 108-286 571-687 (752)
426 TIGR01318 gltD_gamma_fam gluta 97.2 0.0023 5.1E-08 70.4 11.4 111 107-285 282-398 (467)
427 PRK00783 DNA-directed RNA poly 97.2 0.00016 3.4E-09 73.2 1.9 54 567-630 168-221 (263)
428 PRK13795 hypothetical protein; 97.2 0.00018 4E-09 81.6 2.4 54 564-626 577-630 (636)
429 TIGR03294 FrhG coenzyme F420 h 97.1 0.00011 2.5E-09 72.1 0.4 51 565-626 171-221 (228)
430 COG2221 DsrA Dissimilatory sul 97.1 0.00012 2.7E-09 73.2 0.6 45 566-621 170-214 (317)
431 cd07030 RNAP_D D subunit of Ar 97.1 0.00022 4.9E-09 71.9 2.2 55 568-632 169-223 (259)
432 PRK10194 ferredoxin-type prote 97.1 0.00015 3.2E-09 67.7 0.7 57 566-629 64-125 (163)
433 PRK09476 napG quinol dehydroge 97.1 0.00037 7.9E-09 69.6 3.2 58 568-629 97-165 (254)
434 PF00996 GDI: GDP dissociation 97.1 0.0061 1.3E-07 65.6 12.6 55 211-281 231-285 (438)
435 PRK13984 putative oxidoreducta 97.0 0.00029 6.3E-09 80.3 2.4 58 565-628 42-106 (604)
436 KOG0685 Flavin-containing amin 97.0 0.0007 1.5E-08 71.4 4.9 41 107-152 21-61 (498)
437 PRK09898 hypothetical protein; 97.0 0.00032 7E-09 68.2 2.1 53 565-630 151-203 (208)
438 TIGR03862 flavo_PP4765 unchara 97.0 0.01 2.3E-07 62.7 13.5 72 210-299 84-162 (376)
439 PRK07569 bidirectional hydroge 97.0 0.00033 7.2E-09 69.4 2.0 58 565-628 143-210 (234)
440 PLN02976 amine oxidase 96.9 0.00088 1.9E-08 80.0 5.1 41 106-152 692-732 (1713)
441 TIGR01372 soxA sarcosine oxida 96.9 0.0085 1.9E-07 72.1 13.7 104 108-298 318-422 (985)
442 KOG2495 NADH-dehydrogenase (ub 96.9 0.0039 8.4E-08 65.0 9.1 103 108-285 219-329 (491)
443 TIGR01816 sdhA_forward succina 96.9 0.0087 1.9E-07 67.5 13.0 66 211-287 118-183 (565)
444 TIGR03143 AhpF_homolog putativ 96.9 0.0062 1.4E-07 68.6 11.8 34 108-147 144-177 (555)
445 TIGR03149 cyt_nit_nrfC cytochr 96.9 0.00062 1.4E-08 66.9 3.1 54 565-631 122-185 (225)
446 COG2303 BetA Choline dehydroge 96.9 0.00072 1.6E-08 75.6 4.0 37 104-146 4-40 (542)
447 KOG3851 Sulfide:quinone oxidor 96.9 0.00053 1.1E-08 68.4 2.3 38 105-146 37-74 (446)
448 PRK07118 ferredoxin; Validated 96.9 0.00036 7.9E-09 70.7 1.2 49 569-628 140-188 (280)
449 PF13484 Fer4_16: 4Fe-4S doubl 96.9 0.00018 3.8E-09 56.3 -1.0 48 570-623 2-67 (67)
450 PRK12775 putative trifunctiona 96.8 0.0086 1.9E-07 71.8 12.3 112 107-286 571-687 (1006)
451 PF12800 Fer4_4: 4Fe-4S bindin 96.8 0.00078 1.7E-08 37.0 1.6 17 607-623 1-17 (17)
452 PF13434 K_oxygenase: L-lysine 96.8 0.014 3E-07 61.4 12.2 143 106-283 189-339 (341)
453 PRK12779 putative bifunctional 96.8 0.0099 2.2E-07 70.7 12.2 111 108-286 448-563 (944)
454 PRK09326 F420H2 dehydrogenase 96.8 0.00045 9.8E-09 72.6 0.9 56 564-625 8-70 (341)
455 TIGR01810 betA choline dehydro 96.7 0.0011 2.4E-08 74.4 3.8 71 214-298 196-266 (532)
456 COG2878 Predicted NADH:ubiquin 96.5 0.00044 9.6E-09 63.1 -0.8 68 552-629 99-166 (198)
457 TIGR01317 GOGAT_sm_gam glutama 96.5 0.014 3E-07 64.6 10.8 124 108-284 284-413 (485)
458 TIGR02064 dsrA sulfite reducta 96.5 0.001 2.3E-08 70.6 1.8 42 580-626 248-289 (402)
459 PRK10330 formate dehydrogenase 96.5 0.0012 2.6E-08 62.8 1.9 59 566-630 85-157 (181)
460 KOG1336 Monodehydroascorbate/f 96.4 0.013 2.7E-07 62.3 9.1 44 222-284 137-180 (478)
461 TIGR03478 DMSO_red_II_bet DMSO 96.4 0.0009 1.9E-08 67.6 0.6 53 562-627 156-217 (321)
462 KOG1346 Programmed cell death 96.4 0.01 2.2E-07 61.4 7.8 68 213-299 394-461 (659)
463 PF13247 Fer4_11: 4Fe-4S diclu 96.4 0.0011 2.4E-08 55.8 0.6 54 562-628 34-96 (98)
464 TIGR02163 napH_ ferredoxin-typ 96.4 0.0024 5.3E-08 64.1 3.2 48 581-628 173-221 (255)
465 PF12798 Fer4_3: 4Fe-4S bindin 96.4 0.00079 1.7E-08 35.6 -0.2 15 610-624 1-15 (15)
466 PRK14993 tetrathionate reducta 96.3 0.0014 3.1E-08 65.1 1.1 52 564-628 126-186 (244)
467 COG1206 Gid NAD(FAD)-utilizing 96.3 0.016 3.5E-07 58.4 8.2 35 108-148 4-38 (439)
468 PRK10882 hydrogenase 2 protein 96.3 0.0014 3.1E-08 67.6 0.9 52 565-627 140-204 (328)
469 TIGR02951 DMSO_dmsB DMSO reduc 96.2 0.0025 5.4E-08 59.4 2.2 53 565-630 92-153 (161)
470 COG3383 Uncharacterized anaero 96.2 0.0021 4.6E-08 70.8 1.9 64 557-626 138-210 (978)
471 COG4231 Indolepyruvate ferredo 96.2 0.0019 4.1E-08 70.4 1.3 50 566-626 575-626 (640)
472 PRK01438 murD UDP-N-acetylmura 96.2 0.017 3.6E-07 64.1 8.8 32 109-146 18-49 (480)
473 KOG1238 Glucose dehydrogenase/ 96.2 0.0042 9.2E-08 68.3 3.9 39 105-148 55-93 (623)
474 PF14697 Fer4_21: 4Fe-4S diclu 96.1 0.004 8.8E-08 47.1 2.5 24 604-627 2-25 (59)
475 COG0492 TrxB Thioredoxin reduc 96.1 0.048 1E-06 56.2 11.2 95 108-286 144-239 (305)
476 PRK08493 NADH dehydrogenase su 96.1 0.0027 5.9E-08 73.4 2.0 58 564-627 137-223 (819)
477 PRK09477 napH quinol dehydroge 96.0 0.0015 3.2E-08 66.4 -0.4 47 580-626 179-226 (271)
478 TIGR03336 IOR_alpha indolepyru 96.0 0.0024 5.2E-08 72.4 1.2 49 562-625 545-595 (595)
479 KOG2755 Oxidoreductase [Genera 96.0 0.0061 1.3E-07 59.4 3.6 35 110-148 2-36 (334)
480 COG0437 HybA Fe-S-cluster-cont 96.0 0.0056 1.2E-07 58.2 3.2 53 562-627 94-155 (203)
481 PRK05035 electron transport co 96.0 0.002 4.3E-08 73.3 0.2 52 566-623 368-424 (695)
482 TIGR01582 FDH-beta formate deh 95.9 0.0025 5.5E-08 64.5 0.7 51 565-628 121-180 (283)
483 PRK12387 formate hydrogenlyase 95.8 0.0047 1E-07 58.6 1.9 50 579-630 11-60 (180)
484 KOG1346 Programmed cell death 95.7 0.033 7.2E-07 57.8 7.7 59 204-286 254-312 (659)
485 KOG0063 RNAse L inhibitor, ABC 95.7 0.0054 1.2E-07 63.8 1.9 41 580-626 23-68 (592)
486 COG0446 HcaD Uncharacterized N 95.5 0.058 1.3E-06 58.1 9.3 45 223-287 64-108 (415)
487 PRK06567 putative bifunctional 95.3 0.092 2E-06 61.5 10.2 66 220-285 648-728 (1028)
488 COG1148 HdrA Heterodisulfide r 95.3 0.0062 1.3E-07 64.4 0.7 56 568-629 224-292 (622)
489 TIGR01945 rnfC electron transp 95.2 0.0084 1.8E-07 65.2 1.5 52 566-623 361-417 (435)
490 KOG4716 Thioredoxin reductase 95.1 0.033 7.2E-07 56.3 5.3 106 108-289 199-304 (503)
491 KOG0405 Pyridine nucleotide-di 95.1 0.057 1.2E-06 55.0 6.9 103 106-288 188-290 (478)
492 TIGR02745 ccoG_rdxA_fixG cytoc 95.1 0.009 2E-07 64.2 1.4 40 567-622 230-269 (434)
493 PLN02172 flavin-containing mon 95.0 0.041 8.9E-07 60.4 6.3 34 107-146 204-237 (461)
494 COG4656 RnfC Predicted NADH:ub 95.0 0.0021 4.6E-08 68.5 -3.6 48 569-622 366-418 (529)
495 PRK09626 oorD 2-oxoglutarate-a 94.9 0.014 3E-07 49.8 1.8 29 602-630 10-38 (103)
496 PF01593 Amino_oxidase: Flavin 94.9 0.26 5.7E-06 53.0 12.2 221 203-450 200-450 (450)
497 COG2221 DsrA Dissimilatory sul 94.6 0.0073 1.6E-07 60.8 -0.7 27 602-628 166-192 (317)
498 COG3634 AhpF Alkyl hydroperoxi 94.6 0.091 2E-06 53.5 6.9 76 107-253 354-430 (520)
499 PF13237 Fer4_10: 4Fe-4S diclu 94.6 0.017 3.7E-07 42.4 1.3 21 602-622 1-21 (52)
500 TIGR02936 fdxN_nitrog ferredox 94.5 0.015 3.2E-07 48.4 1.0 27 602-628 15-41 (91)
No 1
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1e-121 Score=908.96 Aligned_cols=540 Identities=66% Similarity=1.131 Sum_probs=522.4
Q ss_pred ccccccccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeee
Q 006539 100 EMCRESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRV 179 (641)
Q Consensus 100 ~~~~~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~ 179 (641)
.|+++.+++||+|||||||||+||++|.|++++++..++|+|+||...+|+|++||++|.|.+++||+|+|++...++..
T Consensus 69 ~~~R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t 148 (621)
T KOG2415|consen 69 NMERESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNT 148 (621)
T ss_pred cchhhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccc
Confidence 36778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCccEEEeecCccccCCC--CCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccc
Q 006539 180 PVSSDKFWFLTKDRAFSLPS--PFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA 257 (641)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~ 257 (641)
.++.+.++++.....+.+|. ++.++++|+++++.+.+||.++|++.||+|+.+.++.++.+++||.|.||.|+|+|+.
T Consensus 149 ~vT~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~ 228 (621)
T KOG2415|consen 149 PVTSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGIS 228 (621)
T ss_pred cccccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeecccccc
Confidence 99999999999888877664 7999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccCCC
Q 006539 258 KDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLD 337 (641)
Q Consensus 258 ~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~ 337 (641)
++|.+|++|++|+++.|+.+|.|+|+|+++.+|++++|+++. ...++.|++|++++|++++..+.+|.+.|++|||++
T Consensus 229 k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~--n~e~qtYglGlKEvWei~~~~~~pG~v~HT~GwPl~ 306 (621)
T KOG2415|consen 229 KDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRE--NCEPQTYGLGLKEVWEIDPENHNPGEVAHTLGWPLD 306 (621)
T ss_pred CCCCccccccccceecceeEEEeccccchhHHHHHHHhCccc--CCCcceeccccceeEecChhhcCCcceeeeccCccc
Confidence 999999999999999999999999999999999999999994 789999999999999999999999999999999999
Q ss_pred CCCcceEEEEEeCCCeEEEEEEEccCCCCCCCChHHHHHHHhcCCchhhhccCCceeeeccEEeecCCCccCCccccCCE
Q 006539 338 QKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGG 417 (641)
Q Consensus 338 ~~~~g~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~~~v 417 (641)
..+|||+|+|+++|+.+.+|+++.+||.||+++|+.+||+|+.||.++..+++++++.|++|++++||++++|++.+|+.
T Consensus 307 ~~tYGGsFlYh~~d~~VavGlVVgLdY~NP~lsP~~EFQk~K~hP~i~~vleGgk~i~YgARaLNEGGfQsiPkl~FPGG 386 (621)
T KOG2415|consen 307 NDTYGGSFLYHFNDPLVAVGLVVGLDYKNPYLSPYKEFQKMKHHPSISKVLEGGKRIAYGARALNEGGFQSIPKLVFPGG 386 (621)
T ss_pred CCccCceeEEEcCCCeEEEEEEEEecCCCCCCCHHHHHHHhhcCcchhhhhcCcceeeehhhhhccCCcccCcccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccCC-------chHHHHHHHHHhhHHHHHHHHHhcccchhh--cc
Q 006539 418 AIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHED-------SNMEIYWDTLQKSWVWQELQRARNYRPAFE--YG 488 (641)
Q Consensus 418 ~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~~-------~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~~--~g 488 (641)
+|||++|+++|....+|.++||++|+++||+|.+++... ..+..|++.++++|++||++.+||+++.|+ .|
T Consensus 387 ~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~~~~Ye~nlkds~V~KeLysvRNirPsf~~~lG 466 (621)
T KOG2415|consen 387 ALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLDPTTYEENLKDSYVWKELYSVRNIRPSFHGKLG 466 (621)
T ss_pred eEeecccccccccccccchhhhhcchhHHHHHHHHHhcCccccccccChhhHHHhhhhhHHHHHHHHhhccCcccccccc
Confidence 999999999999999999999999999999999998542 236799999999999999999999999998 89
Q ss_pred chHHHHHHHHHHHHhcCCCCcccCCCCCCcccchhhhcCCCCCCCCCCCCcccccCccccccCccccCCCCCcEEecCCC
Q 006539 489 LLPGLAICGLEHYILRGKSPYTLKHGKPDHEATDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRLRDPK 568 (641)
Q Consensus 489 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~hl~~~~~~ 568 (641)
.|.|+++.++..++++|+.||+|+|++.|++.+++++.++||.|||||++|+||.++++++++|+|++||||||+++|.+
T Consensus 467 ~ygGmiySgi~~~~lkG~~PwTLkh~~~D~e~l~pa~k~~pI~YPKPDg~lSFDlltSvs~sgTnH~~dqP~HL~l~~~~ 546 (621)
T KOG2415|consen 467 LYGGMIYSGIFSYVLKGKVPWTLKHGKNDHEALKPASKYKPIVYPKPDGVLSFDLLTSVSRSGTNHDEDQPAHLTLRDDD 546 (621)
T ss_pred cccchhhhhhHHHhhcCccceeeccCCCchhhccchhhCCCcccCCCCceEEEeecchhhccCCCCCCCCCceeeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCccccccCCeeEEEecCCCC--ceeEEEecCCCccCCCccccCCCCCeeEECCCCCCCCCcCCC
Q 006539 569 IPELVNLPEYAGPESRYCPARVYEYVPDEKN--QLKLQINAQNCLHCKACDIKDPKQNIKWTVPEGGGGPGYSVM 641 (641)
Q Consensus 569 ~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~--~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~p~gg~g~~~~~~ 641 (641)
++.+.|++.|.+|..++|||+|||+++++.+ ++++|||.+||+||+||+|++|.|+|+|++||||.||.|.+|
T Consensus 547 ip~~~nf~~y~gpE~rfCPAgVYEyV~dE~~~~~krlqINaQNCiHCKtCDIKdP~QnI~W~vPeGGgGP~Y~~m 621 (621)
T KOG2415|consen 547 IPVKVNFPVYKGPESRFCPAGVYEYVPDEAGPVGKRLQINAQNCIHCKTCDIKDPKQNINWVVPEGGGGPKYTLM 621 (621)
T ss_pred cchhcCcccccChhhccCCccceeecccccCCCcceEEEccccceecccccccCcccCceeeCcCCCCCCCcccC
Confidence 9999999999999999999999999887654 358999999999999999999999999999999999999998
No 2
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=100.00 E-value=2.3e-39 Score=347.52 Aligned_cols=338 Identities=37% Similarity=0.619 Sum_probs=278.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCcc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (641)
|+|||+||||||||++||+.|++. |++|+|+||+..+|....+++.+.+..++++.+.+... +...+....
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~------G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~---i~~~v~~~~ 72 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKA------GLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE---IERKVTGAR 72 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHc------CCeEEEEecCCCCCCCccccceechhhHHHhCCCcchh---hheeeeeeE
Confidence 579999999999999999999999 99999999999999998889999999999998888653 334444444
Q ss_pred EEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccc
Q 006539 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (641)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~ 265 (641)
+++......+..+. ..+|+++|..+++||.++|++.|++++.++++.++..++++.+.++...
T Consensus 73 ~~~~~~~~~~~~~~----~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~------------- 135 (396)
T COG0644 73 IYFPGEKVAIEVPV----GEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAG------------- 135 (396)
T ss_pred EEecCCceEEecCC----CceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcC-------------
Confidence 44442222222221 3489999999999999999999999999999999999987766444433
Q ss_pred cccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccCCCCCCcceEE
Q 006539 266 FQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSF 345 (641)
Q Consensus 266 ~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 345 (641)
+.+++||+||+|||.+|.+++.+ ++. ...++.+..++++.+.++ ..+...+.+.++......|++|
T Consensus 136 ---~~e~~a~~vI~AdG~~s~l~~~l----g~~---~~~~~~~~~~~~e~~~~~----~~~~~~~~~~~~~~~~~~Gy~w 201 (396)
T COG0644 136 ---DDEVRAKVVIDADGVNSALARKL----GLK---DRKPEDYAIGVKEVIEVP----DDGDVEEFLYGPLDVGPGGYGW 201 (396)
T ss_pred ---CEEEEcCEEEECCCcchHHHHHh----CCC---CCChhheeEEeEEEEecC----CCCceEEEEecCCccCCCceEE
Confidence 27899999999999999998866 443 235678889999988887 3455667776766666678899
Q ss_pred EEEeCCCeEEEEEEEccCCCCCCCChH-HHHHHHhcCCchhhhccCCceeeeccEEeecCCCccCCccccCCEEEEecCC
Q 006539 346 LYHMNDRQIALGLVVALNYHNPFLNPY-EEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAA 424 (641)
Q Consensus 346 ~~~~~~~~~~ig~~~~~d~~~~~~~~~-~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~~~v~LiGDAA 424 (641)
+||.+++.+++|++...+. +...+. +.+++|+.+|.+...+.+++.+++..+.+|.+++...| +..+++++|||||
T Consensus 202 ifP~~~~~~~VG~g~~~~~--~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~-~~~~~~~lvGDAA 278 (396)
T COG0644 202 IFPLGDGHANVGIGVLLDD--PSLSPFLELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPASRP-LVGDGVLLVGDAA 278 (396)
T ss_pred EEECCCceEEEEEEEecCC--cCCCchHHHHHHHHhCcccchhccCCceEEEeeeecccCCcCCCc-cccCCEEEEeccc
Confidence 9999999999999987765 444444 78899999999888887789999999999999998777 8899999999999
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHHhccccC-CchHHHHHHHHHhhHHHHHHHHHhcccchhh
Q 006539 425 GFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE-DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (641)
Q Consensus 425 h~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~-~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~~ 486 (641)
++++|++|.|++.||.+|.+||+.|.++... ...|..|++.+++++..+.+...+..+.+++
T Consensus 279 g~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~ 341 (396)
T COG0644 279 GFVNPLTGEGIRYAIKSGKLAAEAIAEALEGGEEALAEYERLLRKSLAREDLKSLRLLKLLLR 341 (396)
T ss_pred cCCCCcccCcHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHhhhhhhHHh
Confidence 9999999999999999999999999998754 3678899999999877777766666555543
No 3
>PRK10015 oxidoreductase; Provisional
Probab=100.00 E-value=1.9e-39 Score=350.58 Aligned_cols=368 Identities=29% Similarity=0.496 Sum_probs=291.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCcc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (641)
.+||||||||||||++||+.|++. |++|+||||...+|....+|+.+....+.++++.+.. ..++...+..+.
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~------G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~-~~~i~~~~~~~~ 76 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARA------GLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAA-SAPVERKVTREK 76 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhC------CCeEEEEecCCCCCcccccCceeecccHHHHcccccc-cCCcccccccee
Confidence 369999999999999999999999 9999999999888876667888888777777665432 234444455555
Q ss_pred EEEeecCccccCC--CC---CCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCC
Q 006539 186 FWFLTKDRAFSLP--SP---FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (641)
Q Consensus 186 ~~~~~~~~~~~~~--~~---~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g 260 (641)
++++.......++ .. ......|.+.|..|.++|.+++++.|++++.+++|+++..++ +.+.+|.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~-~~v~~v~~~~------- 148 (429)
T PRK10015 77 ISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG-NKVTGVQAGD------- 148 (429)
T ss_pred EEEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC-CEEEEEEeCC-------
Confidence 6665543322222 11 112247899999999999999999999999999999988765 5565666543
Q ss_pred CcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCC--------CCCcEEEEe
Q 006539 261 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKH--------NPGEILHTL 332 (641)
Q Consensus 261 ~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~g~~~~~~ 332 (641)
.+++||+||+|+|.+|.+++.+ ++. ....+..+..++++.+.++.... ..+..++.+
T Consensus 149 ---------~~i~A~~VI~AdG~~s~v~~~l----g~~--~~~~~~~~~~gvk~~~~~~~~~i~~~~~~~~~~g~~w~~~ 213 (429)
T PRK10015 149 ---------DILEANVVILADGVNSMLGRSL----GMV--PASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFA 213 (429)
T ss_pred ---------eEEECCEEEEccCcchhhhccc----CCC--cCCCcCeEEEEEEEEEeCCHHHhhHhhcCCCCCCeEEEec
Confidence 6799999999999999888754 554 23456677889988877653321 235667777
Q ss_pred ccCCCCCCcceEEEEEeCCCeEEEEEEEccC-CCCCCCChHHHHHHHhcCCchhhhccCCceeeeccEEeecCCCccCCc
Q 006539 333 GWPLDQKTYGGSFLYHMNDRQIALGLVVALN-YHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPY 411 (641)
Q Consensus 333 ~~~~~~~~~g~~~~~~~~~~~~~ig~~~~~d-~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~ 411 (641)
+++. .+.+|++|+|+..+ .++||++...+ +.+...++.+.+++|+.||.+++++++++.+++.++.+|.+++..+|+
T Consensus 214 g~~~-~g~~g~G~~~~~~d-~v~vGv~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~e~~~~~ip~gg~~~~~~ 291 (429)
T PRK10015 214 GSPS-DGLMGGGFLYTNKD-SISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQ 291 (429)
T ss_pred CccC-CCCCCceEEEEcCC-cEEEEEEEehhhhccCCCCHHHHHHHHhhChHHHHHhcCCEEEEEeeEEcccCCcccCCc
Confidence 7765 44678899999876 78999976543 233455778888999999999999999999999999999999988899
Q ss_pred cccCCEEEEecCCCCCCC--CCccchHHHHHHHHHHHHHHhccccC----CchHHHHHHHHHhhHHHHHHHHHhcccchh
Q 006539 412 PVFPGGAIIGCAAGFLNV--PKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (641)
Q Consensus 412 ~~~~~v~LiGDAAh~~~P--~~g~G~~~Ai~da~~lA~~l~~~~~~----~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~ 485 (641)
++.+|+++|||||++++| ++|+|+++||.+|.++|+++.+++.. ...|..|++.++++|+.++++..+++..++
T Consensus 292 ~~~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l~~Y~~~~~~~~~~~~l~~~~~~~~~~ 371 (429)
T PRK10015 292 LVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALM 371 (429)
T ss_pred cccCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHCHHHHHHHHHhChHhhh
Confidence 999999999999999984 69999999999999999999988763 367899999999999999999999999888
Q ss_pred h----ccchHHHHHHHHHHHHhcC
Q 006539 486 E----YGLLPGLAICGLEHYILRG 505 (641)
Q Consensus 486 ~----~g~~~g~~~~~~~~~~~~~ 505 (641)
. ...|+.++...+..++...
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~ 395 (429)
T PRK10015 372 ENPRLFSQYPRMVADIMNDMFTID 395 (429)
T ss_pred cCccHHHHHHHHHHHHHHHhcccC
Confidence 5 3667888888888887643
No 4
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=100.00 E-value=3.5e-37 Score=333.34 Aligned_cols=367 Identities=27% Similarity=0.467 Sum_probs=283.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCcc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (641)
+.||||||||||||+++|+.|++. |++|+||||...++....+|+.+....++++++.+... .++...+..+.
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~------G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~-~~~~~~~~~~~ 76 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLARE------GAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADS-APVERLITHEK 76 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhC------CCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhc-Ccccceeeeee
Confidence 369999999999999999999999 99999999999888777788888888888777765432 23332233333
Q ss_pred EEEeecCccccCCC--C---CCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCC
Q 006539 186 FWFLTKDRAFSLPS--P---FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (641)
Q Consensus 186 ~~~~~~~~~~~~~~--~---~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g 260 (641)
+.+......+.+.. . ......|.+.|..|.++|.+++++.|++++.+++|++++.++ +.+++|.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~-g~v~~v~~~-------- 147 (428)
T PRK10157 77 LAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD-GKVVGVEAD-------- 147 (428)
T ss_pred EEEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC-CEEEEEEcC--------
Confidence 44443332222211 1 112246889999999999999999999999999999998765 555455432
Q ss_pred CcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCC--------CCCCcEEEEe
Q 006539 261 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGK--------HNPGEILHTL 332 (641)
Q Consensus 261 ~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~g~~~~~~ 332 (641)
|.+++||+||+|||.+|.++++ +++.. ...+....+++++.+.++... ...+...++.
T Consensus 148 --------g~~i~A~~VI~A~G~~s~l~~~----lgl~~--~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 213 (428)
T PRK10157 148 --------GDVIEAKTVILADGVNSILAEK----LGMAK--RVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFA 213 (428)
T ss_pred --------CcEEECCEEEEEeCCCHHHHHH----cCCCC--CCCCcEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEE
Confidence 4679999999999999987774 46552 334566778888877664321 1245566777
Q ss_pred ccCCCCCCcceEEEEEeCCCeEEEEEEEccCCC-CCCCChHHHHHHHhcCCchhhhccCCceeeeccEEeecCCCccCCc
Q 006539 333 GWPLDQKTYGGSFLYHMNDRQIALGLVVALNYH-NPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPY 411 (641)
Q Consensus 333 ~~~~~~~~~g~~~~~~~~~~~~~ig~~~~~d~~-~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~ 411 (641)
+.+. .+.+|++|+|+..+ .++||++...+.. +....+.+.++.|+.+|.++..+..++.+++.++.+|.+++...|+
T Consensus 214 g~~~-~g~~ggG~~~~~~~-~~svG~~~~~~~~~~~~~~~~~~l~~~~~~p~v~~~~~~~~~~~~~~~~ip~~g~~~~~~ 291 (428)
T PRK10157 214 GSPT-DGLMGGGFLYTNEN-TLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPE 291 (428)
T ss_pred ECCC-CCCcCceeEEEcCC-eEEEEEEEehHHhcccCCCHHHHHHHHHhCchHHHHhCCCeEHHHHhhHhhcCCcccCCc
Confidence 7764 45788899998654 8999998765432 2235677778889899999999988888888888899988888889
Q ss_pred cccCCEEEEecCCCCCCC--CCccchHHHHHHHHHHHHHHhccccCC----chHHHHHHHHHhhHHHHHHHHHhcccchh
Q 006539 412 PVFPGGAIIGCAAGFLNV--PKIKGTHTAMKSGMLAAEAGFGVLHED----SNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (641)
Q Consensus 412 ~~~~~v~LiGDAAh~~~P--~~g~G~~~Ai~da~~lA~~l~~~~~~~----~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~ 485 (641)
+..+++++|||||++++| +.|+|++.||.+|.++|+++.+++..+ ..|..|++.++++ +.++++..+++..++
T Consensus 292 ~~~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~l~~Y~~~l~~~-~~~~l~~~~~~~~~~ 370 (428)
T PRK10157 292 LVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESG-PLRDMRMYQKLPAFL 370 (428)
T ss_pred eecCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHh-HHHHHHHHhccHHHh
Confidence 999999999999999998 599999999999999999999887642 5799999999988 789999999888877
Q ss_pred h----ccchHHHHHHHHHHHHhcC
Q 006539 486 E----YGLLPGLAICGLEHYILRG 505 (641)
Q Consensus 486 ~----~g~~~g~~~~~~~~~~~~~ 505 (641)
. +..|+.++...+..++...
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~ 394 (428)
T PRK10157 371 DNPRMFSGYPELAVGVARDLFTID 394 (428)
T ss_pred cCccHHHHHHHHHHHHHHHheeeC
Confidence 4 4678888888888887643
No 5
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=100.00 E-value=5.4e-30 Score=277.38 Aligned_cols=338 Identities=18% Similarity=0.221 Sum_probs=216.0
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccC
Q 006539 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSS 183 (641)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~ 183 (641)
..++|||+||||||||+++|+.|++. |++|+|+||.... ...+|+.++...++++ ..+... ....+.
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~------G~~VlllEr~~~~--~k~cgg~i~~~~l~~l-gl~~~~---~~~~i~- 102 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKG------GIETFLIERKLDN--AKPCGGAIPLCMVGEF-DLPLDI---IDRKVT- 102 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCCC--CCCccccccHhHHhhh-cCcHHH---HHHHhh-
Confidence 45679999999999999999999999 9999999998642 2346777877666543 111110 000111
Q ss_pred ccEEEeec-CccccCCCCCCCCC-cEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCC-CcEEEEEeCccccc-cC
Q 006539 184 DKFWFLTK-DRAFSLPSPFSNRG-NYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDAD-NKVIGIGTNDMGIA-KD 259 (641)
Q Consensus 184 ~~~~~~~~-~~~~~~~~~~~~~~-~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~-g~v~~V~~~~~g~~-~~ 259 (641)
.+.+... ...+.++......+ .++++|..|.++|.++|.+.|++++.+ .++++..+++ +..+.|++.+...+ .+
T Consensus 103 -~~~~~~p~~~~v~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~ 180 (450)
T PLN00093 103 -KMKMISPSNVAVDIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGA 180 (450)
T ss_pred -hheEecCCceEEEecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccC
Confidence 1122211 11222221111111 235899999999999999999999876 4777765321 11224554321000 01
Q ss_pred CCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCC--CCCCCcEEEEeccCCC
Q 006539 260 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEG--KHNPGEILHTLGWPLD 337 (641)
Q Consensus 260 g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~g~~~~~~~~~~~ 337 (641)
|+ +.+++||+||+|||.+|.+++.+ ++. ...+..+++..+.++.. ....+....+++....
T Consensus 181 g~-------~~~v~a~~VIgADG~~S~vrr~l----g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 243 (450)
T PLN00093 181 GT-------PKTLEVDAVIGADGANSRVAKDI----DAG------DYDYAIAFQERIKIPDDKMEYYEDLAEMYVGDDVS 243 (450)
T ss_pred CC-------ccEEEeCEEEEcCCcchHHHHHh----CCC------CcceeEEEEEEEeCChhhccccCCeEEEEeCCCCC
Confidence 21 35799999999999999999966 433 13355666665555542 1233444555565555
Q ss_pred CCCcceEEEEEeCCCeEEEEEEEccCCCCCCCChHHHHHHHhcCCchhhhccCCceeeeccEEeecCCCccCCccccCCE
Q 006539 338 QKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGG 417 (641)
Q Consensus 338 ~~~~g~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~~~v 417 (641)
++. ++|+||.++ .+.||+..... . ......++.+.. .+...+.+++.+......+|.+ ..+++..+|+
T Consensus 244 p~~--Y~WifP~g~-~~~VG~g~~~~--~--~~~~~~~~~l~~--~~~~~l~~~~~~~~~~~~ip~~---~~~~~~~~~v 311 (450)
T PLN00093 244 PDF--YGWVFPKCD-HVAVGTGTVVN--K--PAIKKYQRATRN--RAKDKIAGGKIIRVEAHPIPEH---PRPRRVRGRV 311 (450)
T ss_pred CCc--eEEEEECCC-cEEEEEEEccC--C--CChHHHHHHHHH--HhhhhcCCCeEEEEEEEEcccc---cccceeCCCc
Confidence 553 489999996 56788764221 1 121222222221 1122334455555555556542 3457888999
Q ss_pred EEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC------CchHHHHHHHHHhhHHHHHHHHHhcccchhh
Q 006539 418 AIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (641)
Q Consensus 418 ~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~------~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~~ 486 (641)
+|||||||.++|++|+|++.||.+|.+||+++.+++.. ...|+.|++++++. +.++++....++++|.
T Consensus 312 lLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~-~g~~~~~~~~l~~~~~ 385 (450)
T PLN00093 312 ALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKK-YWPTYKVLDILQKVFY 385 (450)
T ss_pred EEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999987643 25689999999876 6777887777777663
No 6
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.97 E-value=1.1e-28 Score=264.75 Aligned_cols=334 Identities=18% Similarity=0.220 Sum_probs=210.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
+||+||||||||+++|+.|++. |++|+|+||....+. .+|+.+++..+.++ ..+.. .+...+ ..+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~------G~~V~llE~~~~~~~--~cg~~i~~~~l~~~-g~~~~---~~~~~i--~~~~ 66 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA------GIQTFLLERKPDNAK--PCGGAIPLCMVDEF-ALPRD---IIDRRV--TKMK 66 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCcEEEEecCCCCCC--CccccccHhhHhhc-cCchh---HHHhhh--ceeE
Confidence 5899999999999999999999 999999999875543 35777877666543 11110 000001 1122
Q ss_pred Eeec-CccccCCCCCCCCC-cEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcC-CCcEEEEEeCccc-cccCCCcc
Q 006539 188 FLTK-DRAFSLPSPFSNRG-NYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDA-DNKVIGIGTNDMG-IAKDGSKK 263 (641)
Q Consensus 188 ~~~~-~~~~~~~~~~~~~~-~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~-~g~v~~V~~~~~g-~~~~g~~~ 263 (641)
+... ...+.+.......+ .+.++|..|.++|.+++.+.|++++.++ ++++.... .+...+|++.... ....|+
T Consensus 67 ~~~p~~~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~-- 143 (398)
T TIGR02028 67 MISPSNIAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGT-- 143 (398)
T ss_pred EecCCceEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCC--
Confidence 2211 11122221111111 2368999999999999999999998885 76765421 1223345542200 000122
Q ss_pred cccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCC--CCCCcEEEEeccCCCCCCc
Q 006539 264 ENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGK--HNPGEILHTLGWPLDQKTY 341 (641)
Q Consensus 264 ~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~ 341 (641)
..+++||+||+|||.+|.+++.+ ++. ...+...+...+.++... ........+++....++.
T Consensus 144 -----~~~i~a~~VIgADG~~S~v~~~~----g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~g- 207 (398)
T TIGR02028 144 -----RCTLEVDAVIGADGANSRVAKEI----DAG------DYSYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDF- 207 (398)
T ss_pred -----ccEEEeCEEEECCCcchHHHHHh----CCC------CcceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCc-
Confidence 25799999999999999999965 443 123445555444544331 123334444454445543
Q ss_pred ceEEEEEeCCCeEEEEEEEccCCCCCCCChHHHHHHHhcCCchhhhccCCceeeeccEEeecCCCccCCccccCCEEEEe
Q 006539 342 GGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIG 421 (641)
Q Consensus 342 g~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~~~v~LiG 421 (641)
+.|+||.++ .+.||+.... .. .....+.+..... ....+.+++.++.....+|.+ ..+++..+|++|||
T Consensus 208 -Y~WifP~~~-~~~VG~g~~~--~~---~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~ip~~---~~~~~~~~~~llvG 276 (398)
T TIGR02028 208 -YGWVFPKCD-HVAVGTGTVA--AK---PEIKRLQSGIRAR-AAGKVAGGRIIRVEAHPIPEH---PRPRRVVGRVALVG 276 (398)
T ss_pred -eEEEEECCC-eEEEEEEeCC--CC---ccHHHHHHhhhhh-hhhccCCCcEEEEEEEecccc---ccccEECCCEEEEE
Confidence 489999986 5678875421 11 1222333222111 112233344555544455543 34577889999999
Q ss_pred cCCCCCCCCCccchHHHHHHHHHHHHHHhccccC------CchHHHHHHHHHhhHHHHHHHHHhcccchhh
Q 006539 422 CAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (641)
Q Consensus 422 DAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~------~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~~ 486 (641)
||||+++|++|+|+++||.+|.+||+++.+++.. ...|+.|++++++. +.++++....++++|.
T Consensus 277 DAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~~-~~~~~~~~~~~~~~~~ 346 (398)
T TIGR02028 277 DAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRWDKE-YRPTYRVLDLLQRVFY 346 (398)
T ss_pred cCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999987643 25699999999876 6778888887777763
No 7
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.97 E-value=1.3e-28 Score=264.28 Aligned_cols=326 Identities=18% Similarity=0.281 Sum_probs=206.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHh-h-hhhhhcCCCeeeeccCcc
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL-L-PQWKQEEAPIRVPVSSDK 185 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l-~-~~~~~~~~~~~~~~~~~~ 185 (641)
|||+||||||||+++|+.|++. |++|+|+||.. +....+|+.+++..++++ + +.+.. ..+ ..
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~------G~~V~l~E~~~--~~~~~cg~~i~~~~l~~l~i~~~~~~------~~~--~~ 64 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA------GIETILLERAL--SNIKPCGGAIPPCLIEEFDIPDSLID------RRV--TQ 64 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCcEEEEECCC--CCcCcCcCCcCHhhhhhcCCchHHHh------hhc--ce
Confidence 7999999999999999999999 99999999982 222346788888766543 1 11111 011 12
Q ss_pred EEEeecCc-cccCCCCCCCCCcE--EeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCc
Q 006539 186 FWFLTKDR-AFSLPSPFSNRGNY--VISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSK 262 (641)
Q Consensus 186 ~~~~~~~~-~~~~~~~~~~~~~~--~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~ 262 (641)
..+..... .+... ......| .++|..|.++|.+++.+.|++++.+ .|+++..++++ + .|++.+.....+|+
T Consensus 65 ~~~~~~~~~~~~~~--~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~-~-~v~~~~~~~~~~~~- 138 (388)
T TIGR02023 65 MRMISPSRVPIKVT--IPSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG-V-TLTYRTPKKGAGGE- 138 (388)
T ss_pred eEEEcCCCceeeec--cCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe-E-EEEEEeccccCCCc-
Confidence 22222211 11111 1111233 5899999999999999999999866 58898777643 3 45544300000111
Q ss_pred ccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCC--CCCCcEEEEeccCCCCCC
Q 006539 263 KENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGK--HNPGEILHTLGWPLDQKT 340 (641)
Q Consensus 263 ~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~ 340 (641)
..+++||+||+|||.+|.+++++ ++.. ...+..+++..+.++... ..++....+++....++
T Consensus 139 ------~~~i~a~~VI~AdG~~S~v~r~l----g~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~- 202 (388)
T TIGR02023 139 ------KGSVEADVVIGADGANSPVAKEL----GLPK-----NLPRVIAYQERIKLPDDKMAYYEELADVYYGGEVSPD- 202 (388)
T ss_pred ------ceEEEeCEEEECCCCCcHHHHHc----CCCC-----CCcEEEEEEEEecCCchhcccCCCeEEEEECCCcCCC-
Confidence 25799999999999999998855 4431 223445666555444321 23344434445445454
Q ss_pred cceEEEEEeCCCeEEEEEEEccCCCCCCCChHHHHHHHhcCCchhhhccCCceeeeccEEeecCCCccCCccccCCEEEE
Q 006539 341 YGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAII 420 (641)
Q Consensus 341 ~g~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~~~v~Li 420 (641)
++.|++|.++ .+.+|...... .....+.++.+..... +...+.+......++.. ..+++..+++++|
T Consensus 203 -~y~wv~P~~~-~~~vg~~~~~~----~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~ip~~---~~~~~~~~~v~lv 269 (388)
T TIGR02023 203 -FYGWVFPKGD-HIAVGTGTGTH----GFDAKQLQANLRRRAG----LDGGQTIRREAAPIPMK---PRPRWDFGRAMLV 269 (388)
T ss_pred -ceEEEeeCCC-eeEEeEEECCC----CCCHHHHHHHHHHhhC----CCCceEeeeeeEecccc---ccccccCCCEEEE
Confidence 3489999985 67787754211 1122233333332211 22233333333344432 4467788999999
Q ss_pred ecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC--CchHHHHHHHHHhhHHHHHHHHHhcccchh
Q 006539 421 GCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE--DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (641)
Q Consensus 421 GDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~--~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~ 485 (641)
|||||.++|++|+|+++||.+|.++|++|.+++.. ...|+.|++.+++. +.+++...+..+.++
T Consensus 270 GDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~~~~~L~~Y~~~~~~~-~~~~~~~~~~~~~~~ 335 (388)
T TIGR02023 270 GDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNGDATDLRHYERKFMKL-YGTTFRVLRVLQMVY 335 (388)
T ss_pred eccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988754 36799999999876 555555544444433
No 8
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.97 E-value=1.8e-28 Score=253.06 Aligned_cols=293 Identities=24% Similarity=0.279 Sum_probs=194.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
|||+||||||+|+++|+.|++. |++|+|+||+...+. ..++..+.++.+..+- .+... ... ......
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~------g~~v~vie~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~--~~~---~~~~~~ 67 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK------GLRVLLLEKKSFPRY-KPCGGALSPRVLEELD-LPLEL--IVN---LVRGAR 67 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCeEEEEeccCCCCc-ccccCccCHhHHHHhc-CCchh--hhh---heeeEE
Confidence 6999999999999999999998 999999999987654 4567777777664431 11110 000 001111
Q ss_pred EeecCc-cccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccccc
Q 006539 188 FLTKDR-AFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (641)
Q Consensus 188 ~~~~~~-~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~ 266 (641)
+..... .+..+. .....+.++|..+.+.|.+.+++.|++++++++++++..++++ + .|.+.+
T Consensus 68 ~~~~~~~~~~~~~--~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~-~-~~~~~~------------- 130 (295)
T TIGR02032 68 FFSPNGDSVEIPI--ETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDR-V-VVIVRG------------- 130 (295)
T ss_pred EEcCCCcEEEecc--CCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCE-E-EEEEcC-------------
Confidence 221111 111111 1233577999999999999999999999999999999887643 3 344332
Q ss_pred ccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccCCCCCCcceEEE
Q 006539 267 QRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFL 346 (641)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 346 (641)
++.++++|+||+|+|.+|.+++++ ++.. .+...+.++...+..+.....+.......++...+. +..|+
T Consensus 131 -~~~~~~a~~vv~a~G~~s~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 199 (295)
T TIGR02032 131 -GEGTVTAKIVIGADGSRSIVAKKL----GLRK----EPRELGVAARAEVEMPDEEVDEDFVEVYIDRGISPG--GYGWV 199 (295)
T ss_pred -ccEEEEeCEEEECCCcchHHHHhc----CCCC----CCcceeeEEEEEEecCCcccCcceEEEEcCCCcCCC--ceEEE
Confidence 136899999999999999888754 5542 233445565555555433233343444444433333 34799
Q ss_pred EEeCCCeEEEEEEEccCCCCCCCChHHHHHHHh-cCCchhhhccCCceeeeccEEeecCCCccCCccccCCEEEEecCCC
Q 006539 347 YHMNDRQIALGLVVALNYHNPFLNPYEEFQKFK-HHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAG 425 (641)
Q Consensus 347 ~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~-~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~~~v~LiGDAAh 425 (641)
+|.+++.+.+++....+. ...+..+.++++. .+|. ++..+..+.....++... ..+++..+|++++|||||
T Consensus 200 ~P~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~--~~~~~~~~~v~liGDAA~ 271 (295)
T TIGR02032 200 FPKGDGTANVGVGSRSAE--EGEDLKKYLKDFLARRPE----LKDAETVEVIGAPIPIGR--PDDKTVRGNVLLVGDAAG 271 (295)
T ss_pred EeCCCCeEEEeeeeccCC--CCCCHHHHHHHHHHhCcc----cccCcEEeeeceeeccCC--CCCccccCCEEEEecccC
Confidence 999998889988764332 2345566666664 3443 333334443223343322 345778899999999999
Q ss_pred CCCCCCccchHHHHHHHHHHHHHH
Q 006539 426 FLNVPKIKGTHTAMKSGMLAAEAG 449 (641)
Q Consensus 426 ~~~P~~g~G~~~Ai~da~~lA~~l 449 (641)
+++|+.|||+++||+||.+||++|
T Consensus 272 ~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 272 HVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred CCCCccCCcHHHHHHHHHHHHhhC
Confidence 999999999999999999999875
No 9
>PF05187 ETF_QO: Electron transfer flavoprotein-ubiquinone oxidoreductase; InterPro: IPR007859 Electron-transfer flavoprotein-ubiquinone oxidoreductase (ETF-QO) in the inner mitochondrial membrane accepts electrons from electron-transfer flavoprotein which is located in the mitochondrial matrix and reduces ubiquinone in the mitochondrial membrane. The two redox centres in the protein, FAD and a [4Fe4S] cluster, are present in a 64 kDa monomer [].; GO: 0004174 electron-transferring-flavoprotein dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2GMJ_B 2GMH_B.
Probab=99.97 E-value=1.2e-32 Score=230.40 Aligned_cols=109 Identities=61% Similarity=1.059 Sum_probs=74.0
Q ss_pred cchHHHHHHHHHHHHhcCCCCcccCCCCCCcccchhhhcCCCCCCCCCCCCcccccCccccccCccccCCCCCcEEecCC
Q 006539 488 GLLPGLAICGLEHYILRGKSPYTLKHGKPDHEATDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRLRDP 567 (641)
Q Consensus 488 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~hl~~~~~ 567 (641)
|+|.|+++.++++++++|+.||++++.++|++.+++++..+||+||||||+||||++++||+|||+|+|||||||+|+|+
T Consensus 1 G~~~G~~~~g~~~~~~~g~~p~tl~~~~~D~~~l~~a~~~~~i~YpKpDg~ltFDklssv~~SgT~HeEdQP~HL~l~d~ 80 (110)
T PF05187_consen 1 GLYGGLAYSGLDQNLLKGRAPWTLKHKKPDHESLKPASKCKPIDYPKPDGKLTFDKLSSVYLSGTNHEEDQPCHLKLKDP 80 (110)
T ss_dssp HHHHHHHHHHHHTTTTTT--S------S-GGGG---GGGS---------SSSS--HHHHHHTTT-B--SSS--SEEESST
T ss_pred ChHHHHHHHHHHHHHccCCCCcccCCCCccHHHHhHHHhcccCCCCCCCCCCccccccceeccccCCCCCCCCeeEECCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCCccccccCCeeEEEecC
Q 006539 568 KIPELVNLPEYAGPESRYCPARVYEYVPD 596 (641)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~CP~~~~~~~~~ 596 (641)
++|++.|+..|++||+++|||+|||++++
T Consensus 81 ~i~~~~~~~~y~~P~qryCPAgVYE~v~~ 109 (110)
T PF05187_consen 81 EIPIEVNLPEYGGPEQRYCPAGVYEIVED 109 (110)
T ss_dssp THHHHTHHHHHS-THHHH-TTS-EEEE--
T ss_pred ChhhhhhhhhhcChhhhcCcceeEEEecc
Confidence 99999999999999999999999999865
No 10
>PRK07045 putative monooxygenase; Reviewed
Probab=99.97 E-value=6.2e-28 Score=259.25 Aligned_cols=341 Identities=16% Similarity=0.159 Sum_probs=199.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeee-ccCc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVP-VSSD 184 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~-~~~~ 184 (641)
..+||+||||||+||++|+.|++. |++|+|+||.+...... .+..+.+.++. ++..+.......... ....
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~------G~~v~v~E~~~~~~~~~-~~~~l~~~~~~-~L~~lGl~~~~~~~~~~~~~ 75 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGAR------GHSVTVVERAARNRAQN-GADLLKPSGIG-VVRAMGLLDDVFAAGGLRRD 75 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhc------CCcEEEEeCCCcccCCC-cccccCccHHH-HHHHcCCHHHHHhccccccc
Confidence 368999999999999999999999 99999999998753211 12346665553 222221110000000 0011
Q ss_pred cEEEeecCc-cccCCCCC-CCCC-cEEeeHHHHHHHHHHHHHH-cCCEEecCceEEEEEEcCCCcEEEEEeCccccccCC
Q 006539 185 KFWFLTKDR-AFSLPSPF-SNRG-NYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (641)
Q Consensus 185 ~~~~~~~~~-~~~~~~~~-~~~~-~~~v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g 260 (641)
.+.+..... ...++... ...+ ...++|..|.+.|.+.+.+ .|+++++++++++++.++++.++.|++.+
T Consensus 76 ~~~~~~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~------- 148 (388)
T PRK07045 76 AMRLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSD------- 148 (388)
T ss_pred ceEEecCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCC-------
Confidence 122211111 11111111 1112 2357899999999998865 57999999999999988777666777765
Q ss_pred CcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccCCCCCC
Q 006539 261 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKT 340 (641)
Q Consensus 261 ~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 340 (641)
|.++++|+||+|||.+|.+|+++. ++.............+.. ...... ......+++ ..
T Consensus 149 --------g~~~~~~~vIgADG~~S~vR~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~---~~-- 207 (388)
T PRK07045 149 --------GERVAPTVLVGADGARSMIRDDVL---RMPAERVPYATPMAFGTI---ALTDSV--RECNRLYVD---SN-- 207 (388)
T ss_pred --------CCEEECCEEEECCCCChHHHHHhh---CCCcccCCCCcceeEEEE---eccCCc--cccceEEEc---CC--
Confidence 678999999999999999999763 332100111122222221 111111 111111111 11
Q ss_pred cceEEEEEeCCCeEEEEEEEccCCCCCCCC--hHHHH-HHHhc--CCchhhhccCC-ceeeeccEEeecCCCccCCcccc
Q 006539 341 YGGSFLYHMNDRQIALGLVVALNYHNPFLN--PYEEF-QKFKH--HPAIKPLLEGG-TVVQYGARTLNEGGLQSIPYPVF 414 (641)
Q Consensus 341 ~g~~~~~~~~~~~~~ig~~~~~d~~~~~~~--~~~~~-~~~~~--~p~i~~~l~~~-~~~~~~~~~i~~~g~~~~~~~~~ 414 (641)
.+..|++|..++...+.+....+....... ..+.+ +.+.. .+.+.+.++.. ....+. .++.. ....++|+.
T Consensus 208 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~ 284 (388)
T PRK07045 208 QGLAYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFP--LIPLG-RMNLDRYHK 284 (388)
T ss_pred CceEEEEEcCCCcEEEEEEeccccchhccCCCCHHHHHHHHhhhcCccchHHHhccCcccccc--eeecC-ccccccccC
Confidence 133578898877777766553322111111 11111 22221 12222222211 001111 11111 124568889
Q ss_pred CCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC----CchHHHHHHHHHhhHHHHHHHHHhcccchhh
Q 006539 415 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (641)
Q Consensus 415 ~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~----~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~~ 486 (641)
+|++|||||||.++|+.|||+|+||+||..||+.|...+.. ..+|+.|++.|+.. ....+..++.+.+.++
T Consensus 285 grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~~~~~~~~ 359 (388)
T PRK07045 285 RNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRRPV-NEAVISYGHALATTYH 359 (388)
T ss_pred CCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhhhH-HHHHHhhhHHHhhhcc
Confidence 99999999999999999999999999999999999876543 36899999998864 5555566665555554
No 11
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.97 E-value=6.9e-28 Score=258.24 Aligned_cols=336 Identities=21% Similarity=0.186 Sum_probs=200.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCC-CCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCcc
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA-EVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~-~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (641)
.+||+||||||+||++|+.|++. |++|+||||.+ ..-. ...+..|.+.++. ++..+...............
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~------G~~V~l~E~~~~~~~~-~~r~~~l~~~~~~-~L~~lG~~~~i~~~~~~~~~ 73 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA------GLDVTLLERAPRELLE-RGRGIALSPNALR-ALERLGLWDRLEALGVPPLH 73 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC------CCcEEEEccCcccccc-CceeeeecHhHHH-HHHHcCChhhhhhccCCcee
Confidence 57999999999999999999999 99999999982 2222 1256677887763 33333220000000111111
Q ss_pred E-EEeecC-ccccCCCC--CCCCCcEEeeHHHHHHHHHHHHHHcC-CEEecCceEEEEEEcCCCcEEEEEeC-ccccccC
Q 006539 186 F-WFLTKD-RAFSLPSP--FSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTN-DMGIAKD 259 (641)
Q Consensus 186 ~-~~~~~~-~~~~~~~~--~~~~~~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~~V~~~-~~g~~~~ 259 (641)
. .+.... ..+.+... ......+++.+..|.+.|.+.+.+.+ |++++++.|+.+..+++ .+. |++. +
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~-~v~-v~l~~d------ 145 (387)
T COG0654 74 VMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGD-GVT-VTLSFD------ 145 (387)
T ss_pred eEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC-ceE-EEEcCC------
Confidence 1 111111 11222211 11334788999999999999999876 99999999999999884 343 6666 5
Q ss_pred CCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccCCCCC
Q 006539 260 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQK 339 (641)
Q Consensus 260 g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 339 (641)
|.+++||+||+|||.+|.+|+.+ +............++.. .+.......+.....+ ...
T Consensus 146 ---------G~~~~a~llVgADG~~S~vR~~~----~~~~~~~~~y~~~~l~~----~~~~~~~~~~~~~~~~---~~~- 204 (387)
T COG0654 146 ---------GETLDADLLVGADGANSAVRRAA----GIAEFSGRDYGQTALVA----NVEPEEPHEGRAGERF---THA- 204 (387)
T ss_pred ---------CcEEecCEEEECCCCchHHHHhc----CCCCccCCCCCceEEEE----EeecCCCCCCeEEEEe---cCC-
Confidence 67999999999999999999976 32210111122222221 1121112222222222 111
Q ss_pred CcceEEEEEeCCCeEEEEEEEccCC--CCCCCChHHHHHHHh-cCCchhhhccCCceeeeccE-EeecCCCccCCccccC
Q 006539 340 TYGGSFLYHMNDRQIALGLVVALNY--HNPFLNPYEEFQKFK-HHPAIKPLLEGGTVVQYGAR-TLNEGGLQSIPYPVFP 415 (641)
Q Consensus 340 ~~g~~~~~~~~~~~~~ig~~~~~d~--~~~~~~~~~~~~~~~-~~p~i~~~l~~~~~~~~~~~-~i~~~g~~~~~~~~~~ 415 (641)
+..-++|..++...+.+...... .............+. ..+.... + +.....+.. .++.. .....+|..+
T Consensus 205 --~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~--~~~~~~~~~~~~pl~-~~~a~~~~~~ 278 (387)
T COG0654 205 --GPFALLPLPDNRSSVVWSLPPGPAEDLQGLSDEEFLRELQRRLGERDP-L--GRVTLVSSRSAFPLS-LRVAERYRRG 278 (387)
T ss_pred --CceEEEecCCCceeEEEECChhhHHHHhcCCHHHHHHHHHHhcCcccc-c--ceEEEcccccccccc-chhhhheecC
Confidence 22456788765555555543211 111112211111111 1111100 1 011111111 11111 1123467779
Q ss_pred CEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC---CchHHHHHHHHHhhHHHHHHHHHhcccchhh
Q 006539 416 GGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (641)
Q Consensus 416 ~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~---~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~~ 486 (641)
|++|+|||||.++|+.|||+|+||+|+..||+.|.++... ...|+.|+++|+.. ..+....+..+...|.
T Consensus 279 Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~s~~~~~~~~ 351 (387)
T COG0654 279 RVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGADAAALAAYEARRRPR-AEAIQKLSRALGRLFS 351 (387)
T ss_pred cEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCccHHHHHHHHHhhhhH-HHHHHHHHHHHhhhhc
Confidence 9999999999999999999999999999999999998763 57899999999865 7777777775555553
No 12
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.97 E-value=5.5e-28 Score=258.06 Aligned_cols=328 Identities=13% Similarity=0.157 Sum_probs=194.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCc---cccccccChHHHHHh--hhhhhhcCCCeeeecc
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH---IISGNVFEPRALNEL--LPQWKQEEAPIRVPVS 182 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~---~~~g~~i~~~~l~~l--~~~~~~~~~~~~~~~~ 182 (641)
+||+||||||+|+++|+.|++. |++|+|+|+.+..... ...+..+.+.++.-+ +..|..... . ...
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~------G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~-~--~~~ 72 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK------GIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEK-F--VAE 72 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC------CCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHh-h--cCC
Confidence 6899999999999999999999 9999999987432111 123555777765322 222322110 0 001
Q ss_pred CccEEEeecC--ccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcC-CEEecCceEEEEEEcCCCcEEEEEeCccccccC
Q 006539 183 SDKFWFLTKD--RAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (641)
Q Consensus 183 ~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~ 259 (641)
...+.+.+.. ..+.++.......+|++.|..|.+.|.+.+.+.+ ++++++++++++..++++ + .|.+.+
T Consensus 73 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~------ 144 (374)
T PRK06617 73 MQDIYVVDNKASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY-S-IIKFDD------ 144 (374)
T ss_pred CcEEEEEECCCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe-E-EEEEcC------
Confidence 1122222211 1122222111223689999999999999998875 999999999999887754 3 466654
Q ss_pred CCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccCCCCC
Q 006539 260 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQK 339 (641)
Q Consensus 260 g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 339 (641)
+ +++||+||+|||.+|.+|+.+ +... ...+.. .++. +.++......+.....+ .
T Consensus 145 ---------~-~~~adlvIgADG~~S~vR~~l----~~~~--~~~~y~--~~~~--~~v~~~~~~~~~~~~~~---~--- 198 (374)
T PRK06617 145 ---------K-QIKCNLLIICDGANSKVRSHY----FANE--IEKPYQ--TALT--FNIKHEKPHENCAMEHF---L--- 198 (374)
T ss_pred ---------C-EEeeCEEEEeCCCCchhHHhc----CCCc--ccccCC--eEEE--EEEeccCCCCCEEEEEe---c---
Confidence 4 899999999999999999865 3331 111112 2222 23332222222222222 1
Q ss_pred CcceEEEEEeCCCe-EEEEEEEccCCCCC-CCChHHHHHHHhcCCchhhhccCCceeeeccEEeecCCCccCCccccCCE
Q 006539 340 TYGGSFLYHMNDRQ-IALGLVVALNYHNP-FLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGG 417 (641)
Q Consensus 340 ~~g~~~~~~~~~~~-~~ig~~~~~d~~~~-~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~~~v 417 (641)
..|..+++|..++. ..+.+....+.... ...+.+.+..... +.+...+..-. .......++-.. ...++|+.+|+
T Consensus 199 ~~g~~~~lPl~~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~-~~~~~~~~~l~~-~~~~~~~~grv 275 (374)
T PRK06617 199 PLGPFALLPLKDQYASSVIWSTSSDQAALIVNLPVEEVRFLTQ-RNAGNSLGKIT-IDSEISSFPLKA-RIANRYFHNRI 275 (374)
T ss_pred CCCCEEEeECCCCCeEEEEEeCCHHHHHHHHcCCHHHHHHHHH-HhhchhcCcee-eccceeEEEeee-eeccceecCCE
Confidence 11336788988765 33333332110000 0011122222111 11111111100 000011111111 13568899999
Q ss_pred EEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccCCchHHHHHHHHHhhHHHHHHHHHhcccchhh
Q 006539 418 AIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (641)
Q Consensus 418 ~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~~ 486 (641)
+|+|||||.++|+.|||+|+||+|+..|++.|.. ..+|+.|++.|+.+ ....+..++.+.++|.
T Consensus 276 ~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~----~~~L~~Ye~~R~~~-~~~~~~~t~~l~~~f~ 339 (374)
T PRK06617 276 VLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN----NGTLQEYQKLRQED-NFIMYKLTDELNNIFS 339 (374)
T ss_pred EEEEcccccCCCCccccHHHHHHHHHHHHHHHcC----cchHHHHHHHHhHH-HHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999842 36899999999865 6667777777776665
No 13
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.97 E-value=9.5e-29 Score=261.83 Aligned_cols=325 Identities=20% Similarity=0.241 Sum_probs=181.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhh------cCCCee--
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQ------EEAPIR-- 178 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~------~~~~~~-- 178 (641)
++||+||||||+||++|+.|++. |++|+||||.+...... .|..+.+.++. ++..+.. ...+..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~------G~~v~i~E~~~~~~~~~-~~~~l~~~~~~-~l~~lgl~~~~~~~~~~~~~~ 72 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARA------GIDVTIIERRPDPRPKG-RGIGLSPNSLR-ILQRLGLLDEILARGSPHEVM 72 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHT------TCEEEEEESSSSCCCSS-SSEEEEHHHHH-HHHHTTEHHHHHHHSEEECEE
T ss_pred CceEEEECCCHHHHHHHHHHHhc------ccccccchhcccccccc-ccccccccccc-ccccccchhhhhhhcccccce
Confidence 48999999999999999999999 99999999998764432 45667777763 3332211 110100
Q ss_pred -eecc----CccEEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCc
Q 006539 179 -VPVS----SDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTND 253 (641)
Q Consensus 179 -~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~ 253 (641)
.... ....+.........+.........+.+.|..|.+.|.+.+++.|+++.+++++++++.++++....+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~- 151 (356)
T PF01494_consen 73 RIFFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDG- 151 (356)
T ss_dssp EEEEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEET-
T ss_pred eeEeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccc-
Confidence 0000 0001111111111111112223456789999999999999999999999999999998875533223222
Q ss_pred cccccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEE-EEeecCCCCCCCcEEEEe
Q 006539 254 MGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKE-VWEIDEGKHNPGEILHTL 332 (641)
Q Consensus 254 ~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~g~~~~~~ 332 (641)
.+|+ ..+++||+||+|||.+|.+|+++ +... ......+..+... ...........+ ...+
T Consensus 152 ----~~g~-------~~~i~adlvVgADG~~S~vR~~l----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 212 (356)
T PF01494_consen 152 ----EDGE-------EETIEADLVVGADGAHSKVRKQL----GIDR--PGPDTVYRWGWFGIVFDSDLSDPWED--HCFI 212 (356)
T ss_dssp ----CTCE-------EEEEEESEEEE-SGTT-HHHHHT----TGGE--EEEEEEEEEEEEEEEEECHSHTTTSC--EEEE
T ss_pred ----cCCc-------eeEEEEeeeecccCcccchhhhc----cccc--cCcccccccccccccccccccccccc--cccc
Confidence 1222 25899999999999999999976 3321 0011111111111 111111111122 1111
Q ss_pred ccCCCCCCcceEEEEEeCC-CeEEEEEEEccCCCCCCCCh---HH-HHHHHhcCCchhh-hccCCceeeeccEEeecCCC
Q 006539 333 GWPLDQKTYGGSFLYHMND-RQIALGLVVALNYHNPFLNP---YE-EFQKFKHHPAIKP-LLEGGTVVQYGARTLNEGGL 406 (641)
Q Consensus 333 ~~~~~~~~~g~~~~~~~~~-~~~~ig~~~~~d~~~~~~~~---~~-~~~~~~~~p~i~~-~l~~~~~~~~~~~~i~~~g~ 406 (641)
.. . ..++.+++|..+ +...+.+....+........ .+ .++.+... +.. ... ....... .++...
T Consensus 213 ~~-~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~--~~~~~~- 282 (356)
T PF01494_consen 213 YS-P---PSGGFAIIPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANLPEI--FGPDLLE-TEIDEIS--AWPIPQ- 282 (356)
T ss_dssp EE-E---TTEEEEEEEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHH--HHTCHHH-HEEEEEE--EEEEEE-
T ss_pred cc-c---cccceeEeeccCCccceEEEeeecccccccccccccccccccccccc--ccccccc-ccccccc--cccccc-
Confidence 11 1 112346888877 44444444433322111111 11 11222111 111 011 0111111 111111
Q ss_pred ccCCccccCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC---CchHHHHHHHHHhh
Q 006539 407 QSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKS 469 (641)
Q Consensus 407 ~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~---~~~l~~Ye~~~~~~ 469 (641)
...++|..+|++|||||||.++|+.|||+|+||+||..||+.|...... ..+|+.|++.|+++
T Consensus 283 ~~~~~~~~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g~~~~~~l~~Y~~~r~~~ 348 (356)
T PF01494_consen 283 RVADRWVKGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKGEASEEALKAYEQERRPR 348 (356)
T ss_dssp EEESSSEETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHH
T ss_pred ccccccccceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 1345788899999999999999999999999999999999999987653 36799999999875
No 14
>PRK07538 hypothetical protein; Provisional
Probab=99.96 E-value=2.3e-27 Score=256.69 Aligned_cols=332 Identities=19% Similarity=0.200 Sum_probs=190.0
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEEE
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (641)
||+||||||+||++|+.|++. |++|+||||.+.+.. ...|..+.++++..| ..+...............+.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~-~g~gi~l~p~~~~~L-~~lgl~~~l~~~~~~~~~~~~ 73 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQR------GIEVVVFEAAPELRP-LGVGINLLPHAVREL-AELGLLDALDAIGIRTRELAY 73 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhC------CCcEEEEEcCCcccc-cCcceeeCchHHHHH-HHCCCHHHHHhhCCCCcceEE
Confidence 799999999999999999999 999999999986542 233455666665422 222110000000111122222
Q ss_pred eecCccc--cCCCC---CCCCCcEEeeHHHHHHHHHHHHHH-cC-CEEecCceEEEEEEcCCCcEEEEEeCccccccCCC
Q 006539 189 LTKDRAF--SLPSP---FSNRGNYVISLSQLVRWLGGKAEE-LG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (641)
Q Consensus 189 ~~~~~~~--~~~~~---~~~~~~~~v~~~~l~~~L~~~a~~-~G-v~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~ 261 (641)
.+..... ..+.. ......+.++|..|.+.|.+.+.+ .| ++|+++++|+++..++++.+ +.+.+. .+|+
T Consensus 74 ~~~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~--~~~~~~---~~g~ 148 (413)
T PRK07538 74 FNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV--VFLGDR---AGGD 148 (413)
T ss_pred EcCCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE--EEEecc---CCCc
Confidence 2211111 01100 011224679999999999999866 47 57999999999988776633 333330 1122
Q ss_pred cccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceee-EEEEEEeecCCCCCCCcEEEEeccCCCCCC
Q 006539 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYAL-GIKEVWEIDEGKHNPGEILHTLGWPLDQKT 340 (641)
Q Consensus 262 ~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 340 (641)
+.+++||+||+|||.+|.+|+++. ... ..+...+. .+.... +......+.....++.. .
T Consensus 149 -------~~~~~adlvIgADG~~S~vR~~l~----~~~---~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~g~~--~-- 208 (413)
T PRK07538 149 -------LVSVRGDVLIGADGIHSAVRAQLY----PDE---GPPRWNGVMMWRGVT--EAPPFLTGRSMVMAGHL--D-- 208 (413)
T ss_pred -------cceEEeeEEEECCCCCHHHhhhhc----CCC---CCCcccceEEEEEee--cCccccCCCcEEEEcCC--C--
Confidence 368999999999999999999772 111 01111111 111111 11111122222222211 1
Q ss_pred cceEEEEEeCCC-------eEEEEEEEccC---CCC--CC---CChHHHHHHHhcC-C---chhhhccCC-ceeeeccEE
Q 006539 341 YGGSFLYHMNDR-------QIALGLVVALN---YHN--PF---LNPYEEFQKFKHH-P---AIKPLLEGG-TVVQYGART 400 (641)
Q Consensus 341 ~g~~~~~~~~~~-------~~~ig~~~~~d---~~~--~~---~~~~~~~~~~~~~-p---~i~~~l~~~-~~~~~~~~~ 400 (641)
+..++||..++ .+.+.+....+ ... .+ ....+.+..+... + .+.++++.. ....+
T Consensus 209 -~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---- 283 (413)
T PRK07538 209 -GKLVVYPISEPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAEAIYEY---- 283 (413)
T ss_pred -CEEEEEECCCCcccCCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcCcceeec----
Confidence 22456665542 22222222211 000 01 1112222223221 1 133444422 22222
Q ss_pred eecCCCccCCccccCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccCCchHHHHHHHHHhhHHHHHHHHHhc
Q 006539 401 LNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARN 480 (641)
Q Consensus 401 i~~~g~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~~~~l~~Ye~~~~~~~~~~~~~~~~~ 480 (641)
+.....++++|..+|++|||||||.|+|+.|||+++||+||..||+.|...-....+|+.|++.|+++ ..+.+..++.
T Consensus 284 -p~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~~~~~~aL~~Ye~~R~~~-~~~~~~~s~~ 361 (413)
T PRK07538 284 -PMVDRDPLPRWTRGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAHGDPEAALAAYEAERRPA-TAQIVLANRL 361 (413)
T ss_pred -cccccCCCCcccCCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhHH-HHHHHHHhhh
Confidence 22222356789999999999999999999999999999999999999987533357899999999875 6666666665
No 15
>PRK08013 oxidoreductase; Provisional
Probab=99.96 E-value=9.2e-28 Score=258.66 Aligned_cols=336 Identities=15% Similarity=0.123 Sum_probs=192.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc-----ccccccChHHHHHhhhhhhhcCCCeee-e
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-----ISGNVFEPRALNELLPQWKQEEAPIRV-P 180 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-----~~g~~i~~~~l~~l~~~~~~~~~~~~~-~ 180 (641)
++||+||||||+|+++|+.|++. |++|+||||.+.+.... ..+..+++.++ +++..+...+..... .
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~------G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~-~~L~~lGl~~~~~~~~~ 75 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGS------GLRVAVLEQRVPEPLAADAPPALRVSAINAASE-KLLTRLGVWQDILARRA 75 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhC------CCEEEEEeCCCCcccccCCCCCceeeecchhHH-HHHHHcCCchhhhhhcC
Confidence 58999999999999999999999 99999999987643211 12234566554 333333221111000 0
Q ss_pred ccCccEEEeecC--ccccCCCCC--CCCCcEEeeHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeCccc
Q 006539 181 VSSDKFWFLTKD--RAFSLPSPF--SNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMG 255 (641)
Q Consensus 181 ~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g 255 (641)
.....+.+.+.. ..+.+.... ....+|.+.|..|.+.|.+.+.+. |++++++++|++++.++++ + .|++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v-~v~~~~-- 151 (400)
T PRK08013 76 SCYHGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE-A-FLTLKD-- 151 (400)
T ss_pred ccccEEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-E-EEEEcC--
Confidence 111222222211 111111111 111257899999999999999885 7999999999999887754 3 466554
Q ss_pred cccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccC
Q 006539 256 IAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP 335 (641)
Q Consensus 256 ~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~ 335 (641)
|.+++||+||+|||.+|.+|+++ +++. ....... ..+.. .++......+.....+
T Consensus 152 -------------g~~i~a~lvVgADG~~S~vR~~~----~~~~-~~~~~~~--~~~~~--~v~~~~~~~~~~~~~~--- 206 (400)
T PRK08013 152 -------------GSMLTARLVVGADGANSWLRNKA----DIPL-TFWDYQH--HALVA--TIRTEEPHDAVARQVF--- 206 (400)
T ss_pred -------------CCEEEeeEEEEeCCCCcHHHHHc----CCCc-cccccCc--EEEEE--EEeccCCCCCEEEEEE---
Confidence 67899999999999999999966 5442 1111111 11111 2222211222222222
Q ss_pred CCCCCcceEEEEEeCCCe-EEEEEEEccCCCCC-CCChHHHHHH-HhcCCchhhhccCCceeeeccEEeecCCCccCCcc
Q 006539 336 LDQKTYGGSFLYHMNDRQ-IALGLVVALNYHNP-FLNPYEEFQK-FKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYP 412 (641)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~-~~ig~~~~~d~~~~-~~~~~~~~~~-~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~ 412 (641)
... |..+++|..++. ..+.+....+.... .....+.+.+ +.. .+...+........ ....+-.. ...++|
T Consensus 207 ~~~---g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~l~~~~~~~~-~~~~~l~~-~~~~~~ 279 (400)
T PRK08013 207 HGD---GILAFLPLSDPHLCSIVWSLSPEEAQRMQQAPEEEFNRALAI--AFDNRLGLCELESE-RQVFPLTG-RYARQF 279 (400)
T ss_pred cCC---CCEEEEECCCCCeEEEEEEcCHHHHHHHHcCCHHHHHHHHHH--HHhHhhCceEecCC-ccEEecce-eecccc
Confidence 112 234567876543 45554432211000 0001111111 110 00111111111100 00111111 135688
Q ss_pred ccCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC----C--chHHHHHHHHHhhHHHHHHHHHhcccchhh
Q 006539 413 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----D--SNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (641)
Q Consensus 413 ~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~----~--~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~~ 486 (641)
..+|++|+|||||.++|+.|||+|+||+||..||+.|...+.. . ..|+.|++.|+.. ....+...+.+.++|.
T Consensus 280 ~~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~~~~l~~ 358 (400)
T PRK08013 280 AAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKHS-AALMLAGMQGFRDLFA 358 (400)
T ss_pred cCCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999864421 1 3699999987754 5555565666666654
No 16
>PRK06753 hypothetical protein; Provisional
Probab=99.96 E-value=1.9e-27 Score=254.25 Aligned_cols=331 Identities=16% Similarity=0.160 Sum_probs=200.9
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEEE
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (641)
||+||||||+||++|+.|++. |++|+|+||++.+.. ...|-.+.+.++..+ ..+...............+.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~------g~~v~v~E~~~~~~~-~g~gi~l~~~~~~~L-~~~gl~~~~~~~~~~~~~~~~ 73 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ------GHEVKVFEKNESVKE-VGAGIGIGDNVIKKL-GNHDLAKGIKNAGQILSTMNL 73 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCcccc-cccceeeChHHHHHH-HhcChHHHHHhcCCcccceeE
Confidence 799999999999999999999 999999999987643 234555677766433 222111000000011122222
Q ss_pred eecCccc--cCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccccc
Q 006539 189 LTKDRAF--SLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (641)
Q Consensus 189 ~~~~~~~--~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~ 266 (641)
.+..... .++. ......+.++|..|.+.|.+.+. +++|+++++|+++..++ +.+ .|++.+
T Consensus 74 ~~~~g~~~~~~~~-~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~-~~v-~v~~~~------------- 135 (373)
T PRK06753 74 LDDKGTLLNKVKL-KSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENET-DKV-TIHFAD------------- 135 (373)
T ss_pred EcCCCCEEeeccc-ccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecC-CcE-EEEECC-------------
Confidence 2221111 1111 11123578999999999998765 36899999999998765 333 566655
Q ss_pred ccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceee-EEEEEEeecCCC-CCCCcEEEEeccCCCCCCcceE
Q 006539 267 QRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYAL-GIKEVWEIDEGK-HNPGEILHTLGWPLDQKTYGGS 344 (641)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~g~~ 344 (641)
|.++++|+||+|||.+|.+|+++. ... .....+. .+... ++... .......+.++ . -|..
T Consensus 136 --g~~~~~~~vigadG~~S~vR~~~~----~~~----~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~----~--~g~~ 197 (373)
T PRK06753 136 --GESEAFDLCIGADGIHSKVRQSVN----ADS----KVRYQGYTCFRGL--IDDIDLKLPDCAKEYWG----T--KGRF 197 (373)
T ss_pred --CCEEecCEEEECCCcchHHHHHhC----CCC----CceEcceEEEEEE--eccccccCccceEEEEc----C--CCEE
Confidence 678899999999999999999763 221 1111111 11111 11111 11122222221 1 1346
Q ss_pred EEEEeCCCeEEEEEEEccCCCCCCCC--hHHHH-HHHhc-CCchhhhccCCceeeeccEEeecCCCccCCccccCCEEEE
Q 006539 345 FLYHMNDRQIALGLVVALNYHNPFLN--PYEEF-QKFKH-HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAII 420 (641)
Q Consensus 345 ~~~~~~~~~~~ig~~~~~d~~~~~~~--~~~~~-~~~~~-~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~~~v~Li 420 (641)
+++|..++...+.+....+...+... ..+.+ +.+.. .+.+.++++....... ...+.....++++|..+|++||
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~rv~Li 275 (373)
T PRK06753 198 GIVPLLNNQAYWFITINAKERDPKYSSFGKPHLQAYFNHYPNEVREILDKQSETGI--LHHDIYDLKPLKSFVYGRIVLL 275 (373)
T ss_pred EEEEcCCCeEEEEEEeccccCCcccccccHHHHHHHHhcCChHHHHHHHhCCcccc--eeeccccccccccccCCCEEEE
Confidence 78888887776665543221111111 11222 22322 2345555542211110 0011112234568888999999
Q ss_pred ecCCCCCCCCCccchHHHHHHHHHHHHHHhccccCCchHHHHHHHHHhhHHHHHHHHHhcccchhhc
Q 006539 421 GCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYRPAFEY 487 (641)
Q Consensus 421 GDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~~~ 487 (641)
|||||.++|+.|||+|+||+||..|++.|... ....+|+.|++.|+++ ..+.++.++...++++.
T Consensus 276 GDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~~-~~~~al~~Y~~~r~~~-~~~~~~~s~~~~~~~~~ 340 (373)
T PRK06753 276 GDAAHATTPNMGQGAGQAMEDAIVLANCLNAY-DFEKALQRYDKIRVKH-TAKVIKRSRKIGKIAQI 340 (373)
T ss_pred ecccccCCCCcCccHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHhhHH-HHHHHHHHHHHhHHHhc
Confidence 99999999999999999999999999999542 2257899999999875 88888888887777753
No 17
>PRK08244 hypothetical protein; Provisional
Probab=99.96 E-value=4.6e-27 Score=260.09 Aligned_cols=337 Identities=16% Similarity=0.144 Sum_probs=194.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCcc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (641)
|++||+||||||+||++|+.|++. |++|+||||.+.... ...+..+.+++++ ++..+...............
T Consensus 1 ~~~dVlIVGaGpaGl~lA~~L~~~------G~~v~viEr~~~~~~-~~ra~~l~~~~~e-~l~~lGl~~~l~~~~~~~~~ 72 (493)
T PRK08244 1 MKYEVIIIGGGPVGLMLASELALA------GVKTCVIERLKETVP-YSKALTLHPRTLE-ILDMRGLLERFLEKGRKLPS 72 (493)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCC-CcceeEecHHHHH-HHHhcCcHHHHHhhcccccc
Confidence 368999999999999999999999 999999999876432 2235567777763 33332211000000000011
Q ss_pred EEEeecCccccCCCC-CCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccc
Q 006539 186 FWFLTKDRAFSLPSP-FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKE 264 (641)
Q Consensus 186 ~~~~~~~~~~~~~~~-~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~ 264 (641)
..+......+.+... ......+.+++..+.+.|.+.+++.|++++++++++++..++++ + .|++.+ .+|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~----~~g---- 142 (493)
T PRK08244 73 GHFAGLDTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDG-V-EVVVRG----PDG---- 142 (493)
T ss_pred eEEecccccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCe-E-EEEEEe----CCc----
Confidence 111111111122111 11122467899999999999999999999999999999887754 3 344432 111
Q ss_pred ccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccCCCCCCcceE
Q 006539 265 NFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGS 344 (641)
Q Consensus 265 ~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~ 344 (641)
..++++|+||+|||.+|.+|+++ ++.. ....... .++.....+.. ...+.....+ .+. |..
T Consensus 143 ----~~~i~a~~vVgADG~~S~vR~~l----gi~~-~g~~~~~--~~~~~~~~~~~--~~~~~~~~~~----~~~--g~~ 203 (493)
T PRK08244 143 ----LRTLTSSYVVGADGAGSIVRKQA----GIAF-PGTDATF--TAMLGDVVLKD--PPPSSVLSLC----TRE--GGV 203 (493)
T ss_pred ----cEEEEeCEEEECCCCChHHHHhc----CCCc-cCCCcce--EEEEEEEEecC--CCCcceeEEE----eCC--ceE
Confidence 15799999999999999999865 4442 0111111 12211111111 1122222222 121 446
Q ss_pred EEEEeCCCeEEEEEEEccCCC---CCCCChHHHHHHHhcCCchhhhccCCceeeeccEEeecCCCccCCccccCCEEEEe
Q 006539 345 FLYHMNDRQIALGLVVALNYH---NPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIG 421 (641)
Q Consensus 345 ~~~~~~~~~~~ig~~~~~d~~---~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~~~v~LiG 421 (641)
+++|.+++...+.+....... .......+..+.+... +...+..... .+.. .++ ......++|..+|++|+|
T Consensus 204 ~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~-~~~~-~~~-~~~~~a~~~~~gRv~L~G 278 (493)
T PRK08244 204 MIVPLSGGIYRVLIIDPERPQVPKDEPVTLEELKTSLIRI--CGTDFGLNDP-VWMS-RFG-NATRQAERYRSGRIFLAG 278 (493)
T ss_pred EEEECCCCeEEEEEEcCCcccccCCCCCCHHHHHHHHHHh--hCCCCCcCCe-eEEE-ecc-cceeeHhhhccCcEEEee
Confidence 889998887776554322111 1111222222222210 0000110011 1100 000 011134577889999999
Q ss_pred cCCCCCCCCCccchHHHHHHHHHHHHHHhccccC---CchHHHHHHHHHhhHHHHHHHHHhcccchh
Q 006539 422 CAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (641)
Q Consensus 422 DAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~---~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~ 485 (641)
||||.++|+.|||+|+||+||..||+.|...+.. ...|+.|++.|+.. ....+...+....++
T Consensus 279 DAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~~~~~lL~~Ye~eR~~~-~~~~~~~~~~~~~~~ 344 (493)
T PRK08244 279 DAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGWAPDWLLDSYHAERHPV-GTALLRNTEVQTKLF 344 (493)
T ss_pred cceeccCCccccccccchhhHHHHHHHHHHHHcCCCCchhhhhhHHHHHHH-HHHHHHHhHHHHHHh
Confidence 9999999999999999999999999999887643 46899999988763 444444444333344
No 18
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.96 E-value=2.6e-27 Score=254.61 Aligned_cols=341 Identities=17% Similarity=0.144 Sum_probs=189.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCC--CCccccccccChHHHHHhhhhhhhcCCCeeeeccC
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV--GAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSS 183 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~--g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~ 183 (641)
|.+||+||||||+||++|+.|++. |++|+|+||++.. ... ..++.+.++++ +++..+...+.........
T Consensus 1 ~~~dV~IvGaGpaGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~-~~a~~l~~~~~-~~l~~lGl~~~l~~~~~~~ 72 (392)
T PRK08243 1 MRTQVAIIGAGPAGLLLGQLLHLA------GIDSVVLERRSREYVEGR-IRAGVLEQGTV-DLLREAGVGERMDREGLVH 72 (392)
T ss_pred CcceEEEECCCHHHHHHHHHHHhc------CCCEEEEEcCCccccccc-cceeEECHhHH-HHHHHcCChHHHHhcCCcc
Confidence 368999999999999999999999 9999999999752 111 22445777765 3333333211111111111
Q ss_pred ccEEEeecCcc--ccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCC
Q 006539 184 DKFWFLTKDRA--FSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (641)
Q Consensus 184 ~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~ 261 (641)
..+.+...... ++++..........+++..+.+.|.+.+.+.|+++++++++++++..++..+ .|++.+ +|+
T Consensus 73 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~-~V~~~~-----~G~ 146 (392)
T PRK08243 73 DGIELRFDGRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRP-YVTYEK-----DGE 146 (392)
T ss_pred CcEEEEECCEEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCce-EEEEEc-----CCe
Confidence 22222222111 1221111111234556888889999988889999999999999876222222 455531 222
Q ss_pred cccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEE-eecCCCCCCCcEEEEeccCCCCCC
Q 006539 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVW-EIDEGKHNPGEILHTLGWPLDQKT 340 (641)
Q Consensus 262 ~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~ 340 (641)
..+++||+||+|||.+|.+|+++ +.... ......+..++..+. ..+. ......+ . ....
T Consensus 147 -------~~~i~ad~vVgADG~~S~vR~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~---~~~~- 206 (392)
T PRK08243 147 -------EHRLDCDFIAGCDGFHGVSRASI----PAGAL-RTFERVYPFGWLGILAEAPP---VSDELIY-A---NHER- 206 (392)
T ss_pred -------EEEEEeCEEEECCCCCCchhhhc----Ccchh-hceecccCceEEEEeCCCCC---CCCceEE-e---eCCC-
Confidence 15799999999999999999976 22210 000011111111111 1111 1111111 1 1111
Q ss_pred cceEEEEEeCCCeEEEEEEEccCCCCCCCChHHHHHHHhc-CC--chhhhccCCceeeeccEEeecCCCccCCccccCCE
Q 006539 341 YGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKH-HP--AIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGG 417 (641)
Q Consensus 341 ~g~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~-~p--~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~~~v 417 (641)
+..++++.+++...+.+.................+.+.. .+ ....++. +...... ..+... ...++|..+|+
T Consensus 207 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~--~~~~~~-~~~~~~~~grv 281 (392)
T PRK08243 207 -GFALCSMRSPTRSRYYLQCPLDDKVEDWSDERFWDELRRRLPPEDAERLVT-GPSIEKS--IAPLRS-FVAEPMQYGRL 281 (392)
T ss_pred -ceEEEecCCCCcEEEEEEecCCCCcccCChhHHHHHHHHhcCccccccccc-Ccccccc--ceeeee-ceeccceeCCE
Confidence 223444444444444433322111111111111122211 01 0111111 1111110 011111 12356778999
Q ss_pred EEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC--CchHHHHHHHHHhhHHHHHHHHHhcccchhh
Q 006539 418 AIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE--DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (641)
Q Consensus 418 ~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~--~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~~ 486 (641)
+|||||||.++|+.|||+|+||+||..||+.|.+.+.. ..+|+.|++.++.+ +.+.++.++.+.++++
T Consensus 282 vLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~L~~Ye~~r~~r-~~~~~~~~~~~~~~~~ 351 (392)
T PRK08243 282 FLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYREGDTALLDAYSATALRR-VWKAERFSWWMTSMLH 351 (392)
T ss_pred EEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999886543 47899999999865 6777777776666654
No 19
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.96 E-value=6.9e-27 Score=251.95 Aligned_cols=337 Identities=17% Similarity=0.166 Sum_probs=201.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCcc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (641)
+..||+||||||+||++|+.|++. |++|+|+||.+.++. ...|..+.+.++. ++..+...............
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~------g~~v~v~Er~~~~~~-~g~gi~l~~~~~~-~l~~lg~~~~~~~~~~~~~~ 74 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQ------GIKVKLLEQAAEIGE-IGAGIQLGPNAFS-ALDALGVGEAARQRAVFTDH 74 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhC------CCcEEEEeeCccccc-ccceeeeCchHHH-HHHHcCChHHHHhhccCCcc
Confidence 467999999999999999999999 999999999987653 2234456676653 23333221110011111122
Q ss_pred EEEeec--Ccc---ccCCCCC---CCCCcEEeeHHHHHHHHHHHHHHcC-CEEecCceEEEEEEcCCCcEEEEEeCcccc
Q 006539 186 FWFLTK--DRA---FSLPSPF---SNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (641)
Q Consensus 186 ~~~~~~--~~~---~~~~~~~---~~~~~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~~V~~~~~g~ 256 (641)
+.+.+. ... +...... .....+.++|..+.+.|.+.+.+.+ +++++++.++++..++++ + .|++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~--- 149 (396)
T PRK08163 75 LTMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG-V-TVFDQQ--- 149 (396)
T ss_pred eEEEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc-e-EEEEcC---
Confidence 222221 000 1111100 0112357899999999999998775 999999999999876643 3 466554
Q ss_pred ccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCC--CCCCCcEEEEecc
Q 006539 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEG--KHNPGEILHTLGW 334 (641)
Q Consensus 257 ~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~g~~~~~~~~ 334 (641)
|.+++||+||+|||.+|.+|+.+. +... ..... ..+......... ....+......
T Consensus 150 ------------g~~~~ad~vV~AdG~~S~~r~~~~---g~~~--~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~-- 207 (396)
T PRK08163 150 ------------GNRWTGDALIGCDGVKSVVRQSLV---GDAP--RVTGH---VVYRAVIDVDDMPEDLRINAPVLWA-- 207 (396)
T ss_pred ------------CCEEecCEEEECCCcChHHHhhcc---CCCC--Ccccc---EEEEEEEeHHHCcchhccCccEEEE--
Confidence 578999999999999999988762 2211 11111 122222221110 00111111111
Q ss_pred CCCCCCcceEEEEEeCCCe-EEEEEEEccCCCC----CCCChHHHHHHHhc-CCchhhhccCCceeeeccEEeecCCCcc
Q 006539 335 PLDQKTYGGSFLYHMNDRQ-IALGLVVALNYHN----PFLNPYEEFQKFKH-HPAIKPLLEGGTVVQYGARTLNEGGLQS 408 (641)
Q Consensus 335 ~~~~~~~g~~~~~~~~~~~-~~ig~~~~~d~~~----~~~~~~~~~~~~~~-~p~i~~~l~~~~~~~~~~~~i~~~g~~~ 408 (641)
.+ .+..+.||..++. ..+.+....+... ......+..+.+.. +|.+.++++....... ..+ ....+
T Consensus 208 --g~--~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~ 279 (396)
T PRK08163 208 --GP--HCHLVHYPLRGGEQYNLVVTFHSREQEEWGVKDGSKEEVLSYFEGIHPRPRQMLDKPTSWKR--WAT--ADREP 279 (396)
T ss_pred --cC--CceEEEEEecCCeEEEEEEEECCCCCcccccCCCCHHHHHHHHcCCChHHHHHHhcCCceeE--ccc--cCCCc
Confidence 11 1335678876654 3333333222111 11122233344432 5666666653322211 111 11225
Q ss_pred CCccccCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC-CchHHHHHHHHHhhHHHHHHHHHhcccchhh
Q 006539 409 IPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE-DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (641)
Q Consensus 409 ~~~~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~-~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~~ 486 (641)
+++|..+|++|+|||||.++|+.|||+|+||+||..||++|...... ..+|+.|++.|+.+ ..+.+..++.+..+++
T Consensus 280 ~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~al~~y~~~R~~r-~~~~~~~s~~~~~~~~ 357 (396)
T PRK08163 280 VAKWSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGCDGDAEAAFALYESVRIPR-TARVVLSAREMGRIYH 357 (396)
T ss_pred ccccccCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-HHHHHHHHHHhHHhhC
Confidence 56888899999999999999999999999999999999999753222 46899999999875 7777777777776665
No 20
>PRK05868 hypothetical protein; Validated
Probab=99.96 E-value=6.1e-27 Score=249.35 Aligned_cols=332 Identities=15% Similarity=0.085 Sum_probs=187.7
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEEE
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (641)
||+||||||+||++|+.|++. |++|+||||.+.... ...+..+.+.++ +.+..+...............+.+
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~------G~~v~viE~~~~~~~-~g~~i~~~~~a~-~~L~~lGl~~~~~~~~~~~~~~~~ 74 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRH------GYSVTMVERHPGLRP-GGQAIDVRGPAL-DVLERMGLLAAAQEHKTRIRGASF 74 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhC------CCCEEEEcCCCCCCC-CceeeeeCchHH-HHHHhcCCHHHHHhhccCccceEE
Confidence 799999999999999999999 999999999986542 112233455544 222222111000000011112222
Q ss_pred eecCcc-ccCC---CC---CCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCC
Q 006539 189 LTKDRA-FSLP---SP---FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (641)
Q Consensus 189 ~~~~~~-~~~~---~~---~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~ 261 (641)
...... +... .. ......+.+.|..|.+.|.+. ...|++++++++|++++.+++ .+ .|++.+
T Consensus 75 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~-~~~~v~i~~~~~v~~i~~~~~-~v-~v~~~d-------- 143 (372)
T PRK05868 75 VDRDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGA-TQPSVEYLFDDSISTLQDDGD-SV-RVTFER-------- 143 (372)
T ss_pred EeCCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHh-ccCCcEEEeCCEEEEEEecCC-eE-EEEECC--------
Confidence 221111 0000 00 011224578899999887653 356899999999999987653 33 577665
Q ss_pred cccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEE-EEEEeecCCCCCCCcEEEEeccCCCCCC
Q 006539 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGI-KEVWEIDEGKHNPGEILHTLGWPLDQKT 340 (641)
Q Consensus 262 ~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 340 (641)
|.++++|+||+|||.+|.+|+.+. +... .....++. .....++... ..+....++ +..+.
T Consensus 144 -------g~~~~adlvIgADG~~S~vR~~~~---~~~~-----~~~~~~g~~~~~~~~~~~~-~~~~~~~~~---~g~~~ 204 (372)
T PRK05868 144 -------AAAREFDLVIGADGLHSNVRRLVF---GPEE-----QFVKRLGTHAAIFTVPNFL-ELDYWQTWH---YGDST 204 (372)
T ss_pred -------CCeEEeCEEEECCCCCchHHHHhc---CCcc-----cceeecceEEEEEEcCCCC-CCCcceEEE---ecCCc
Confidence 678899999999999999999772 2221 11112222 1222233211 111111111 12211
Q ss_pred cceEEEEEeCCC-eEEEEEEEccC---CCCCCCC-hHHHH-HHHhcC----CchhhhccCCceeeeccEEeecCCCccCC
Q 006539 341 YGGSFLYHMNDR-QIALGLVVALN---YHNPFLN-PYEEF-QKFKHH----PAIKPLLEGGTVVQYGARTLNEGGLQSIP 410 (641)
Q Consensus 341 ~g~~~~~~~~~~-~~~ig~~~~~d---~~~~~~~-~~~~~-~~~~~~----p~i~~~l~~~~~~~~~~~~i~~~g~~~~~ 410 (641)
...+|+..++ .....+....+ +...... ..+.+ +.|... +.+.+.+.......+ +.....+++
T Consensus 205 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~~~~-----~~~~~~~~~ 277 (372)
T PRK05868 205 --MAGVYSARNNTEARAALAFMDTELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPDFYF-----DEMSQILMD 277 (372)
T ss_pred --EEEEEecCCCCceEEEEEEecCCcccccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCceee-----ccceEEecC
Confidence 1345666543 32333322111 1000000 11222 222211 223233222111111 111112567
Q ss_pred ccccCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhcccc-CCchHHHHHHHHHhhHHHHHHHHHhcccchhh
Q 006539 411 YPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH-EDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (641)
Q Consensus 411 ~~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~-~~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~~ 486 (641)
+|+.+|++|||||||.+.|+.|||+++||+||..||+.|..... -..+|+.||+.+|.. +.+..+..+.....|.
T Consensus 278 ~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~~~~~~~al~~ye~~~~~~-~~~~q~~~~~~~~~~~ 353 (372)
T PRK05868 278 RWSRGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAAGDDYQLGFANYHAEFHGF-VERNQWLVSDNIPGGA 353 (372)
T ss_pred CCCCCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhHH-HHHhhhhhhccCCccc
Confidence 89999999999999999999999999999999999999976432 257899999998864 6666666776666664
No 21
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.96 E-value=3.3e-27 Score=253.94 Aligned_cols=320 Identities=17% Similarity=0.146 Sum_probs=186.3
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccc----cccccChHHHHHhhhh---hhhcCCCe
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII----SGNVFEPRALNELLPQ---WKQEEAPI 177 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~----~g~~i~~~~l~~l~~~---~~~~~~~~ 177 (641)
.+.+||+||||||+|+++|+.|++. |++|+||||.+....... ....+.+.++. ++.. |.......
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~------G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~-~l~~lGl~~~~~~~~ 76 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADA------GLSVALVEGREPPRWQADQPDLRVYAFAADNAA-LLDRLGVWPAVRAAR 76 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC------CCEEEEEeCCCCcccccCCCCCEEEEecHHHHH-HHHHCCchhhhhHhh
Confidence 3468999999999999999999999 999999999875432111 11235666552 2322 22211100
Q ss_pred eeeccCccEEEeec--CccccCCCC--CCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCc
Q 006539 178 RVPVSSDKFWFLTK--DRAFSLPSP--FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTND 253 (641)
Q Consensus 178 ~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~ 253 (641)
......+.+... ...+.++.. .....+|.+++..+.+.|.+.+++.|++++++++|++++.++++ + .|++.+
T Consensus 77 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~ 152 (392)
T PRK08773 77 --AQPYRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADR-V-RLRLDD 152 (392)
T ss_pred --CCcccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe-E-EEEECC
Confidence 001112222211 111222211 11123688999999999999999999999999999999877643 3 466654
Q ss_pred cccccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEec
Q 006539 254 MGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLG 333 (641)
Q Consensus 254 ~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~ 333 (641)
|.++++|+||+|||.+|.+++.+ ++.. . .......++...... .....+.....+
T Consensus 153 ---------------g~~~~a~~vV~AdG~~S~vr~~~----g~~~--~-~~~~~~~~~~~~v~~--~~~~~~~~~~~~- 207 (392)
T PRK08773 153 ---------------GRRLEAALAIAADGAASTLRELA----GLPV--S-RHDYAQRGVVAFVDT--EHPHQATAWQRF- 207 (392)
T ss_pred ---------------CCEEEeCEEEEecCCCchHHHhh----cCCc--e-EEEeccEEEEEEEEc--cCCCCCEEEEEe-
Confidence 56899999999999999988854 4442 0 011111232222121 111122222222
Q ss_pred cCCCCCCcceEEEEEeCCCeEEEEEEEccCCCCC--CCChHHHHHHHhcCCchhhhccCCceeeeccEEeecCCCccCCc
Q 006539 334 WPLDQKTYGGSFLYHMNDRQIALGLVVALNYHNP--FLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPY 411 (641)
Q Consensus 334 ~~~~~~~~g~~~~~~~~~~~~~ig~~~~~d~~~~--~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~ 411 (641)
... |...++|..++...+.+....+.... .....+..+.+.. .+...+..-+..... ...+- .....++
T Consensus 208 --~~~---g~~~~lP~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~-~~~~l-~~~~~~~ 278 (392)
T PRK08773 208 --LPT---GPLALLPFADGRSSIVWTLPDAEAERVLALDEAAFSRELTQ--AFAARLGEVRVASPR-TAFPL-RRQLVQQ 278 (392)
T ss_pred --CCC---CcEEEEECCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHH--HHhhhhcCeEecCCc-cEeec-hhhhhhh
Confidence 111 33567888877776665542210000 0111111111110 011111100010000 01111 1123568
Q ss_pred cccCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC------CchHHHHHHHHHhh
Q 006539 412 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKS 469 (641)
Q Consensus 412 ~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~------~~~l~~Ye~~~~~~ 469 (641)
|..+|++|+|||||.++|+.|||+|+||+||..||+.|.+.+.. ...|+.|++.|+..
T Consensus 279 ~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~ 342 (392)
T PRK08773 279 YVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSD 342 (392)
T ss_pred hcCCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999876532 26799999988764
No 22
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.96 E-value=3e-27 Score=255.41 Aligned_cols=336 Identities=12% Similarity=0.088 Sum_probs=193.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCc-------cccccccChHHHHHhhhhhhhcCCCee
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH-------IISGNVFEPRALNELLPQWKQEEAPIR 178 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~-------~~~g~~i~~~~l~~l~~~~~~~~~~~~ 178 (641)
|++||+||||||+|+++|+.|++. |++|+|+|+.+..... ...+..+.++++. ++..+........
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~------G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~-~L~~lGl~~~l~~ 73 (405)
T PRK05714 1 MRADLLIVGAGMVGSALALALQGS------GLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQR-ILERLGAWDGIAA 73 (405)
T ss_pred CCccEEEECccHHHHHHHHHHhcC------CCEEEEEcCCCccccccccCCCCCccchhhhHHHHH-HHHHCChhhhhhH
Confidence 358999999999999999999998 9999999998631100 1123456666553 3322221100000
Q ss_pred e-eccCccEEEeecCc--cccCCCC--CCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCc
Q 006539 179 V-PVSSDKFWFLTKDR--AFSLPSP--FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTND 253 (641)
Q Consensus 179 ~-~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~ 253 (641)
. ......+.+.+... .+.+... .....++.+++..+.+.|.+.+.+.|+++++++++++++.++++ + .|++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~ 151 (405)
T PRK05714 74 RRASPYSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD-W-LLTLAD 151 (405)
T ss_pred hhCccceeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-E-EEEECC
Confidence 0 00111222222111 1122111 11122578999999999999998889999999999999887754 3 466655
Q ss_pred cccccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEec
Q 006539 254 MGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLG 333 (641)
Q Consensus 254 ~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~ 333 (641)
|.+++||+||+|||.+|.+|+.+ ++.. .... .....+......+ ..........+
T Consensus 152 ---------------g~~~~a~~vVgAdG~~S~vR~~l----g~~~--~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~- 206 (405)
T PRK05714 152 ---------------GRQLRAPLVVAADGANSAVRRLA----GCAT--REWD-YLHHAIVTSVRCS--EPHRATAWQRF- 206 (405)
T ss_pred ---------------CCEEEeCEEEEecCCCchhHHhc----CCCc--cccc-CCceEEEEEEEcC--CCCCCEEEEEc-
Confidence 57899999999999999999965 4432 1111 1111111111111 11112111111
Q ss_pred cCCCCCCcceEEEEEeCCC----eEEEEEEEccCCCCC--CCChHHHHHHHhc--CCchhhhccCCceeeeccEEeecCC
Q 006539 334 WPLDQKTYGGSFLYHMNDR----QIALGLVVALNYHNP--FLNPYEEFQKFKH--HPAIKPLLEGGTVVQYGARTLNEGG 405 (641)
Q Consensus 334 ~~~~~~~~g~~~~~~~~~~----~~~ig~~~~~d~~~~--~~~~~~~~~~~~~--~p~i~~~l~~~~~~~~~~~~i~~~g 405 (641)
... |..+++|..++ ...+.+....+.... .....+..+.+.. .+.+.+++.......| +- .
T Consensus 207 --~~~---g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~l-~ 275 (405)
T PRK05714 207 --TDD---GPLAFLPLERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERAFEGRLGEVLSADPRLCV-----PL-R 275 (405)
T ss_pred --CCC---CCeEEeeCCCCCCCCeEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHhCCceecCCccEE-----ec-c
Confidence 111 33567777532 223333321110000 0111111111111 0111122211111111 11 1
Q ss_pred CccCCccccCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhcccc------CCchHHHHHHHHHhhHHHHHHHHHh
Q 006539 406 LQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH------EDSNMEIYWDTLQKSWVWQELQRAR 479 (641)
Q Consensus 406 ~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~------~~~~l~~Ye~~~~~~~~~~~~~~~~ 479 (641)
....++|..+|++|+|||||.++|+.|||+|+||+||..||+.|..+.. ...+|+.|++.|+.+ ..+.+..++
T Consensus 276 ~~~~~~~~~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~ 354 (405)
T PRK05714 276 QRHAKRYVEPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPH-NLALMAAME 354 (405)
T ss_pred eeehhhhccCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 1245789999999999999999999999999999999999999976432 136899999999865 777777777
Q ss_pred cccchhhc
Q 006539 480 NYRPAFEY 487 (641)
Q Consensus 480 ~~~~~~~~ 487 (641)
.+.++|+.
T Consensus 355 ~~~~~~~~ 362 (405)
T PRK05714 355 GFERLFQA 362 (405)
T ss_pred HHHHHHCC
Confidence 77777753
No 23
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.96 E-value=2.4e-27 Score=256.19 Aligned_cols=337 Identities=18% Similarity=0.146 Sum_probs=193.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCc-cccccccChHHHHHhhhhhhhcCCCeeeeccCccE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH-IISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~-~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (641)
|||+||||||+||++|+.|++. ++|++|+|+||.+..... ...+..+.++++. ++..+...............+
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~----g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~-~l~~lGl~~~~~~~~~~~~~~ 76 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQA----APHLPVTVVDAAPAGAWSRDPRASAIAAAARR-MLEALGVWDEIAPEAQPITDM 76 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcC----CCCCEEEEEeCCCcccCCCCcceEEecHHHHH-HHHHCCChhhhhhhcCcccEE
Confidence 7999999999999999999998 223999999998753221 1345667776652 333222110000000111112
Q ss_pred EEeecCc-------cccCCCCC--CCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccc
Q 006539 187 WFLTKDR-------AFSLPSPF--SNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA 257 (641)
Q Consensus 187 ~~~~~~~-------~~~~~~~~--~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~ 257 (641)
.+.+... .+.+.... .....+.+++..+.+.|.+.+.+.|++++++++|+++..++++ + .|++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~---- 150 (403)
T PRK07333 77 VITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEG-V-TVTLSD---- 150 (403)
T ss_pred EEEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE-E-EEEECC----
Confidence 2221110 01111100 1112467899999999999999999999999999999877643 3 466655
Q ss_pred cCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccCCC
Q 006539 258 KDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLD 337 (641)
Q Consensus 258 ~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~ 337 (641)
|.++++|+||+|||.+|.+|+.+ ++.. . .......++.. .+.......+.....+ .
T Consensus 151 -----------g~~~~ad~vI~AdG~~S~vr~~~----g~~~--~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~- 206 (403)
T PRK07333 151 -----------GSVLEARLLVAADGARSKLRELA----GIKT--V-GWDYGQSGIVC--TVEHERPHGGRAEEHF---L- 206 (403)
T ss_pred -----------CCEEEeCEEEEcCCCChHHHHHc----CCCc--c-cccCCCEEEEE--EEEcCCCCCCEEEEEe---C-
Confidence 57899999999999999988854 5442 0 11111112211 1111111112222111 1
Q ss_pred CCCcceEEEEEeCCCeEEEEEEEccCCCCCC--CChHHHHHHHhcCCchhhhccCCceeeeccEEeecCCCccCCccccC
Q 006539 338 QKTYGGSFLYHMNDRQIALGLVVALNYHNPF--LNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFP 415 (641)
Q Consensus 338 ~~~~g~~~~~~~~~~~~~ig~~~~~d~~~~~--~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~~ 415 (641)
.. |..|++|..++..++.+....+..... .......+.+.. .+...+....... ....++. .....++|..+
T Consensus 207 ~~--g~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~g 280 (403)
T PRK07333 207 PA--GPFAILPLKGNRSSLVWTERTADAERLVALDDLVFEAELEQ--RFGHRLGELKVLG-KRRAFPL-GLTLARSFVAP 280 (403)
T ss_pred CC--CceEEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHH--HhhhhcCceEecc-CccEeec-hhhhhhhccCC
Confidence 11 336788998888776544321100000 011111111110 0001111000000 0011111 11245678899
Q ss_pred CEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhcccc------CCchHHHHHHHHHhhHHHHHHHHHhcccchhh
Q 006539 416 GGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH------EDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (641)
Q Consensus 416 ~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~------~~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~~ 486 (641)
|++|+|||||.++|+.|||+|+||+||..||+.|...+. ...+|+.|++.|+.. ....+..++...+++.
T Consensus 281 rv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~~~~~~~~ 356 (403)
T PRK07333 281 RFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFD-TVRMGVTTDVLNRLFS 356 (403)
T ss_pred CEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999987652 247899999877643 5555555565555554
No 24
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.96 E-value=5.4e-27 Score=251.77 Aligned_cols=334 Identities=16% Similarity=0.123 Sum_probs=200.3
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc----ccccccChHHHHHhhhhhhhcCCCee-eeccC
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI----ISGNVFEPRALNELLPQWKQEEAPIR-VPVSS 183 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~----~~g~~i~~~~l~~l~~~~~~~~~~~~-~~~~~ 183 (641)
||+||||||+||++|+.|++. |++|+|+||++.++... ..+..+.+.++.. +..+........ .....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~------G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~-l~~lGl~~~~~~~~~~~~ 73 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS------GLKIALIEATPAEAAATPGFDNRVSALSAASIRL-LEKLGVWDKIEPDRAQPI 73 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC------CCEEEEEeCCCccccCCCCCCcceeecCHHHHHH-HHHCCchhhhhhhcCCCc
Confidence 799999999999999999999 99999999998754221 1234566665532 223221111111 11111
Q ss_pred ccEEEeecCc--cccCCCC--CCCCCcEEeeHHHHHHHHHHHHHHcC-CEEecCceEEEEEEcCCCcEEEEEeCcccccc
Q 006539 184 DKFWFLTKDR--AFSLPSP--FSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (641)
Q Consensus 184 ~~~~~~~~~~--~~~~~~~--~~~~~~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~ 258 (641)
..+.+..... .+.++.. ......+.+++..+.+.|.+.+.+.| ++++++++|+++..+++ .+ .|++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~-~~-~v~~~~----- 146 (385)
T TIGR01988 74 RDIHVSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSD-HV-ELTLDD----- 146 (385)
T ss_pred eEEEEEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCC-ee-EEEECC-----
Confidence 2222222221 1222211 11223688999999999999999988 99999999999987764 33 466655
Q ss_pred CCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccCCCC
Q 006539 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQ 338 (641)
Q Consensus 259 ~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~ 338 (641)
|.++.+|+||+|||.+|.+|+++ +++. . .......++......+. .........+ . .
T Consensus 147 ----------g~~~~~~~vi~adG~~S~vr~~l----~~~~--~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~-~ 203 (385)
T TIGR01988 147 ----------GQQLRARLLVGADGANSKVRQLA----GIPT--T-GWDYGQSAVVANVKHER--PHQGTAWERF---T-P 203 (385)
T ss_pred ----------CCEEEeeEEEEeCCCCCHHHHHc----CCCc--c-ccccCCeEEEEEEEecC--CCCCEEEEEe---c-C
Confidence 56799999999999999998865 4331 0 11111122222222221 1122211111 1 1
Q ss_pred CCcceEEEEEeCCCeEEEEEEEccCCCC--CCCChHHHHHHHhcCCchhhhccCCceeeeccEEeecCCCccCCccccCC
Q 006539 339 KTYGGSFLYHMNDRQIALGLVVALNYHN--PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPG 416 (641)
Q Consensus 339 ~~~g~~~~~~~~~~~~~ig~~~~~d~~~--~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 416 (641)
. |..+++|.+++...+.+....+... ....+.+..+.+... +...+.... ........+. .....++|..+|
T Consensus 204 ~--g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~ 277 (385)
T TIGR01988 204 T--GPLALLPLPDNRSSLVWTLPPEEAERLLALSDEEFLAELQRA--FGSRLGAIT-LVGERHAFPL-SLTHAKRYVAPR 277 (385)
T ss_pred C--CCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHH--HhhhcCceE-eccCcceeec-hhhhhhheecCc
Confidence 1 3367889988887777664321100 011122222222110 011111000 0000011111 112345788899
Q ss_pred EEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhcccc------CCchHHHHHHHHHhhHHHHHHHHHhcccchhh
Q 006539 417 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH------EDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (641)
Q Consensus 417 v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~------~~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~~ 486 (641)
++|+|||||.++|+.|||+++||+||..||+.|...+. ...+|+.|++.++++ +...+..++.+.+++.
T Consensus 278 v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~-~~~~~~~~~~~~~~~~ 352 (385)
T TIGR01988 278 LALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFD-NAAMLGATDGLNRLFS 352 (385)
T ss_pred eEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999987643 147899999999865 7777777777777664
No 25
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.96 E-value=4.6e-27 Score=254.97 Aligned_cols=340 Identities=13% Similarity=0.119 Sum_probs=190.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc-ccccccChHHHHHhhhhhhhcCCCeeeeccCc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (641)
.++||+||||||||+++|+.|++. |++|+||||++...... ..+..+.+.++. .+..+...+..........
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~-~L~~lGl~~~l~~~~~~~~ 89 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDS------GLRIALIEAQPAEAAAAKGQAYALSLLSAR-IFEGIGVWEKILPQIGKFR 89 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcC------CCEEEEEecCCccccCCCCcEEEechHHHH-HHHHCChhhhhHhhcCCcc
Confidence 468999999999999999999999 99999999998654221 123456776653 3322221110000001111
Q ss_pred cEEEeecCc--cccCCCC-C-CCCCcEEeeHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeCccccccC
Q 006539 185 KFWFLTKDR--AFSLPSP-F-SNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (641)
Q Consensus 185 ~~~~~~~~~--~~~~~~~-~-~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~ 259 (641)
.+.+.+... ...+... . ....++.+.+..+.+.|.+.+.+. |+++++++++++++.++++ + .|++.+ +
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~-~-~v~~~~-----~ 162 (415)
T PRK07364 90 QIRLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA-A-TVTLEI-----E 162 (415)
T ss_pred EEEEEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-e-EEEEcc-----C
Confidence 222222111 1112111 1 111245555557888998888775 6999999999999877644 3 455543 0
Q ss_pred CCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccCCCCC
Q 006539 260 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQK 339 (641)
Q Consensus 260 g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 339 (641)
+. ..+++||+||+|||.+|.+|+.+ ++.. ... ......+.. .+...........+.+ | ..
T Consensus 163 ~~-------~~~i~adlvIgADG~~S~vR~~~----~~~~-~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~-~--~~- 222 (415)
T PRK07364 163 GK-------QQTLQSKLVVAADGARSPIRQAA----GIKT-KGW--KYWQSCVTA--TVKHEAPHNDIAYERF-W--PS- 222 (415)
T ss_pred Cc-------ceEEeeeEEEEeCCCCchhHHHh----CCCc-eee--cCCCEEEEE--EEEccCCCCCEEEEEe-c--CC-
Confidence 11 25799999999999999999865 4432 011 111111221 1221111122222211 1 11
Q ss_pred CcceEEEEEeCCCeEEEEEEEccCC-CC-CCCChHHHHHHHhcCCchhhhccCCceeeeccEEeecCCCccCCccccCCE
Q 006539 340 TYGGSFLYHMNDRQIALGLVVALNY-HN-PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGG 417 (641)
Q Consensus 340 ~~g~~~~~~~~~~~~~ig~~~~~d~-~~-~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~~~v 417 (641)
|..+++|.+++...+.+....+. .. ......+..+.+.. .+...+.....+.. ....+.. ....++|..+|+
T Consensus 223 --g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~rv 296 (415)
T PRK07364 223 --GPFAILPLPGNRCQIVWTAPHAQAKALLALPEAEFLAELQQ--RYGDQLGKLELLGD-RFLFPVQ-LMQSDRYVQHRL 296 (415)
T ss_pred --CCeEEeECCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHH--HhhhhhcCceecCC-Cceecch-hhhhhhhcCCcE
Confidence 23578898887776654432110 00 00111111111111 01111111011110 0011111 113467888999
Q ss_pred EEEecCCCCCCCCCccchHHHHHHHHHHHHHHhcccc---C---CchHHHHHHHHHhhHHHHHHHHHhcccchhh
Q 006539 418 AIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH---E---DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (641)
Q Consensus 418 ~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~---~---~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~~ 486 (641)
+|||||||.++|+.|||+|+||+||..||++|...+. . ..+|+.|++.|+.. ....++.++....+|.
T Consensus 297 ~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~s~~~~~~~~ 370 (415)
T PRK07364 297 ALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRE-NWLILGFTDLLDRLFS 370 (415)
T ss_pred EEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999986542 1 26899999987754 5545556665555554
No 26
>PRK07588 hypothetical protein; Provisional
Probab=99.96 E-value=1.2e-26 Score=249.67 Aligned_cols=335 Identities=13% Similarity=0.050 Sum_probs=190.3
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEEE
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (641)
||+||||||+||++|+.|++. |++|+|+||.+..... ..+-.+.++++. ++..+...............+.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~-g~~~~l~~~~~~-~l~~lGl~~~l~~~~~~~~~~~~ 73 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRY------GHEPTLIERAPELRTG-GYMVDFWGVGYE-VAKRMGITDQLREAGYQIEHVRS 73 (391)
T ss_pred eEEEECccHHHHHHHHHHHHC------CCceEEEeCCCCccCC-CeEEeccCcHHH-HHHHcCCHHHHHhccCCccceEE
Confidence 799999999999999999999 9999999998764321 112223444432 22222110000000011112222
Q ss_pred eecCcc--ccCC--CCCCC--CCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCc
Q 006539 189 LTKDRA--FSLP--SPFSN--RGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSK 262 (641)
Q Consensus 189 ~~~~~~--~~~~--~~~~~--~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~ 262 (641)
.+.... ..++ ..... ...+.++|..|.+.|.+.+. .|++|+++++|++++.++++ + .|++.+
T Consensus 74 ~~~~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~-v-~v~~~~--------- 141 (391)
T PRK07588 74 VDPTGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEHRDG-V-RVTFER--------- 141 (391)
T ss_pred EcCCCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEECCCe-E-EEEECC---------
Confidence 221111 0111 00111 12357999999999988654 47999999999999887643 3 466655
Q ss_pred ccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccCCCCCCcc
Q 006539 263 KENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYG 342 (641)
Q Consensus 263 ~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 342 (641)
|.++++|+||+|||.+|.+|+.+ ++... ......+..+. .................+ ..++ +
T Consensus 142 ------g~~~~~d~vIgADG~~S~vR~~~---~~~~~---~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~---~~~g--~ 203 (391)
T PRK07588 142 ------GTPRDFDLVIGADGLHSHVRRLV---FGPER---DFEHYLGCKVA-ACVVDGYRPRDERTYVLY---NEVG--R 203 (391)
T ss_pred ------CCEEEeCEEEECCCCCccchhhc---cCCcc---ceEEEcCcEEE-EEEcCCCCCCCCceEEEE---eCCC--C
Confidence 67789999999999999999964 22221 00111111111 111111111112111111 1121 1
Q ss_pred eEEEEEeCCCeEEEEEEEccCCCCCCCChHHH---H-HHHhcC-Cchhhhcc---CCceeeeccEEeecCCCccCCcccc
Q 006539 343 GSFLYHMNDRQIALGLVVALNYHNPFLNPYEE---F-QKFKHH-PAIKPLLE---GGTVVQYGARTLNEGGLQSIPYPVF 414 (641)
Q Consensus 343 ~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~---~-~~~~~~-p~i~~~l~---~~~~~~~~~~~i~~~g~~~~~~~~~ 414 (641)
...++|..++...+.+....+...+....... + +.+... +....+++ ....+.+ .......+++|..
T Consensus 204 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~w~~ 278 (391)
T PRK07588 204 QVARVALRGDRTLFLFIFRAEHDNPPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYF-----DVVSQIRMDRWSR 278 (391)
T ss_pred EEEEEecCCCCeEEEEEEEcCCccccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchhe-----eeeeeeccCcccc
Confidence 24567777666555554433222222222111 1 122221 21222222 1111110 0001124568889
Q ss_pred CCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhcccc-CCchHHHHHHHHHhhHHHHHHHHHhcccchhhc
Q 006539 415 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH-EDSNMEIYWDTLQKSWVWQELQRARNYRPAFEY 487 (641)
Q Consensus 415 ~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~-~~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~~~ 487 (641)
+|++|+|||||.++|+.|||+|+||+||..||+.|..... ...+|+.|++.|+.+ +...+..++.+..++..
T Consensus 279 grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~al~~Y~~~R~~~-~~~~~~~~~~~~~~~~~ 351 (391)
T PRK07588 279 GRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAGGDHRRAFDAYEKRLRPF-IAGKQAAAAKFLSVFAP 351 (391)
T ss_pred CCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH-HHHHHhhcccccccccC
Confidence 9999999999999999999999999999999999976422 246899999999875 77777777777777753
No 27
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.96 E-value=1.1e-26 Score=260.04 Aligned_cols=339 Identities=17% Similarity=0.182 Sum_probs=190.3
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeee--c
Q 006539 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVP--V 181 (641)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~--~ 181 (641)
..+++||+||||||+||++|+.|++. |++|+||||.+.+... ..+.++.+++++ ++..+.......... .
T Consensus 20 ~~~~~dVlIVGaGpaGl~lA~~L~~~------G~~v~viE~~~~~~~~-~ra~~l~~~~~~-~l~~lGl~~~l~~~~~~~ 91 (547)
T PRK08132 20 DPARHPVVVVGAGPVGLALAIDLAQQ------GVPVVLLDDDDTLSTG-SRAICFAKRSLE-IFDRLGCGERMVDKGVSW 91 (547)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhC------CCcEEEEeCCCCCCCC-CeEEEEcHHHHH-HHHHcCCcHHHHhhCcee
Confidence 34679999999999999999999999 9999999999865332 224457777663 333332211000000 0
Q ss_pred cCccEEEeecCccccCC--CCC-CCC-CcEEeeHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeCcccc
Q 006539 182 SSDKFWFLTKDRAFSLP--SPF-SNR-GNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (641)
Q Consensus 182 ~~~~~~~~~~~~~~~~~--~~~-~~~-~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~ 256 (641)
..... +........++ ... ... ..+.+.+..+.+.|.+.+.+. |++|+++++++++..++++.. +++.+
T Consensus 92 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~--v~~~~--- 165 (547)
T PRK08132 92 NVGKV-FLRDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVT--LTVET--- 165 (547)
T ss_pred eceeE-EeCCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEE--EEEEC---
Confidence 00001 11111111111 100 111 133478899999999999876 699999999999988875432 33322
Q ss_pred ccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccCC
Q 006539 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPL 336 (641)
Q Consensus 257 ~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 336 (641)
.+| ..++++|+||+|||.+|.+|+.+ ++... ........+-. ...+.. ..+.....+++.+.
T Consensus 166 -~~g--------~~~i~ad~vVgADG~~S~vR~~l----g~~~~-g~~~~~~~~~~--d~~~~~--~~~~~~~~~~~~~~ 227 (547)
T PRK08132 166 -PDG--------PYTLEADWVIACDGARSPLREML----GLEFE-GRTFEDRFLIA--DVKMKA--DFPTERWFWFDPPF 227 (547)
T ss_pred -CCC--------cEEEEeCEEEECCCCCcHHHHHc----CCCCC-CccccceEEEE--EEEecC--CCCCeeeEEEeccC
Confidence 111 14799999999999999999865 55421 11111111111 011111 11222222232222
Q ss_pred CCCCcceEEEEEeCCCeEEEEEEEccCCC-CCCCChHHHHHHHhcCCchhhhccCCce--eeeccEEeecCCCccCCccc
Q 006539 337 DQKTYGGSFLYHMNDRQIALGLVVALNYH-NPFLNPYEEFQKFKHHPAIKPLLEGGTV--VQYGARTLNEGGLQSIPYPV 413 (641)
Q Consensus 337 ~~~~~g~~~~~~~~~~~~~ig~~~~~d~~-~~~~~~~~~~~~~~~~p~i~~~l~~~~~--~~~~~~~i~~~g~~~~~~~~ 413 (641)
.++ ...++++..++...+.+....+.. ...... +. +. +.+.+++..... +.+.. .. .......++|.
T Consensus 228 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~--~~l~~~~~~~~~~~~~~~~-~~-~~~~~~a~~~~ 297 (547)
T PRK08132 228 HPG--QSVLLHRQPDNVWRIDFQLGWDADPEAEKKP-EN---VI--PRVRALLGEDVPFELEWVS-VY-TFQCRRMDRFR 297 (547)
T ss_pred CCC--cEEEEEeCCCCeEEEEEecCCCCCchhhcCH-HH---HH--HHHHHHcCCCCCeeEEEEE-ee-eeeeeeecccc
Confidence 222 124455555555554443221110 000111 11 11 123333321111 11110 00 11112456788
Q ss_pred cCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC---CchHHHHHHHHHhhHHHHHHHHHhcccchh
Q 006539 414 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (641)
Q Consensus 414 ~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~---~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~ 485 (641)
.+||+|+|||||.++|+.|||+|+||+||..||..|...+.. ...|+.|+++|+.. ..+.+..++....++
T Consensus 298 ~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~~lL~~Ye~eR~p~-~~~~~~~s~~~~~~~ 371 (547)
T PRK08132 298 HGRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGRAPDSLLDSYASEREFA-ADENIRNSTRSTDFI 371 (547)
T ss_pred cccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999998876543 47899999999864 555555555444443
No 28
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.96 E-value=1.1e-26 Score=259.28 Aligned_cols=340 Identities=16% Similarity=0.110 Sum_probs=197.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCcc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (641)
+++||+||||||+||++|+.|++. |++|+||||...+.... .+..+.++.+. ++..+...............
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~------G~~v~v~Er~~~~~~~~-ra~~l~~~~~~-~L~~lGl~~~l~~~~~~~~~ 80 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQY------GVRVLVLERWPTLYDLP-RAVGIDDEALR-VLQAIGLADEVLPHTTPNHG 80 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCCCC-ceeeeCHHHHH-HHHHcCChhHHHhhcccCCc
Confidence 468999999999999999999999 99999999998654322 24456666653 33222211110000111112
Q ss_pred EEEeecCcc--ccCCCC-CC---CCCcEEeeHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeCcccccc
Q 006539 186 FWFLTKDRA--FSLPSP-FS---NRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (641)
Q Consensus 186 ~~~~~~~~~--~~~~~~-~~---~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~ 258 (641)
+.+...... ..++.. .. ....+.+.+..+.+.|.+.+.+. |++|+++++|++++.++++ + .|++.+ .
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~-v-~v~~~~----~ 154 (538)
T PRK06183 81 MRFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDG-V-TVTLTD----A 154 (538)
T ss_pred eEEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe-E-EEEEEc----C
Confidence 222221111 111110 00 11235678899999999998875 8999999999999988765 3 455542 1
Q ss_pred CCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccCCCC
Q 006539 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQ 338 (641)
Q Consensus 259 ~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~ 338 (641)
+|+ ..+++||+||+|||.+|.+|+.+ ++.. ........++.+. + ...............+ .+
T Consensus 155 ~G~-------~~~i~ad~vVgADG~~S~vR~~l----g~~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~----~~ 216 (538)
T PRK06183 155 DGQ-------RETVRARYVVGCDGANSFVRRTL----GVPF-EDLTFPERWLVVD-V-LIANDPLGGPHTYQYC----DP 216 (538)
T ss_pred CCC-------EEEEEEEEEEecCCCchhHHHHc----CCee-eCCCccceEEEEE-E-ecccCccCCCceEEEE----CC
Confidence 232 16899999999999999999966 4432 0111111111111 0 1111111111111111 11
Q ss_pred CCcceEEEEEeCCCeEEEEEEEccCCCCCCCChHHHHHHH-hcCCchhhhccCCceeeeccEEeecCCCccCCccccCCE
Q 006539 339 KTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKF-KHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGG 417 (641)
Q Consensus 339 ~~~g~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~-~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~~~v 417 (641)
. +...+++..++...+.+....+.........+.+.++ ...... ....+.+ +. ..........++|..+|+
T Consensus 217 ~--~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~-~~--~~~~~~~~~a~~~~~gRv 288 (538)
T PRK06183 217 A--RPYTSVRLPHGRRRWEFMLLPGETEEQLASPENVWRLLAPWGPT---PDDAELI-RH--AVYTFHARVADRWRSGRV 288 (538)
T ss_pred C--CCEEEEEcCCCeEEEEEEeCCCCChhhcCCHHHHHHHHHhhCCC---CcceEEE-EE--EeeeEccEEhhhhccCCE
Confidence 1 2245667776666655544222111111112222222 111000 0000111 11 010111113467888999
Q ss_pred EEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC---CchHHHHHHHHHhhHHHHHHHHHhcccchhh
Q 006539 418 AIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (641)
Q Consensus 418 ~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~---~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~~ 486 (641)
+|+|||||.++|+.|||+|+||+||..||+.|...+.. ...|+.|++.|++. ..+.++.++.+.+++.
T Consensus 289 ~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~~~~~~L~~Ye~eR~p~-~~~~~~~s~~~~~~~~ 359 (538)
T PRK06183 289 LLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGRAGDALLDTYEQERRPH-ARAMIDLAVRLGRVIC 359 (538)
T ss_pred EEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999865533 47899999999875 7777787877776663
No 29
>PRK06847 hypothetical protein; Provisional
Probab=99.96 E-value=2e-26 Score=246.50 Aligned_cols=342 Identities=20% Similarity=0.172 Sum_probs=197.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHh-----hhhhhhcCCCeeeec
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL-----LPQWKQEEAPIRVPV 181 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l-----~~~~~~~~~~~~~~~ 181 (641)
..||+||||||+||++|+.|++. |++|+|+|+.+..... ..|..+.+..+..+ ++.+.....+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~------g~~v~v~E~~~~~~~~-g~g~~l~~~~~~~l~~~gl~~~~~~~~~~----- 71 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA------GIAVDLVEIDPEWRVY-GAGITLQGNALRALRELGVLDECLEAGFG----- 71 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC------CCCEEEEecCCCCccC-CceeeecHHHHHHHHHcCCHHHHHHhCCC-----
Confidence 46899999999999999999999 9999999998765331 23445566555322 1111111111
Q ss_pred cCccEEEeecCccc--cCCCC--C--CCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccc
Q 006539 182 SSDKFWFLTKDRAF--SLPSP--F--SNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMG 255 (641)
Q Consensus 182 ~~~~~~~~~~~~~~--~~~~~--~--~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g 255 (641)
...+.+.+..... .++.. . .......+.+..+.+.|.+.+++.|++++++++|+++..++++ + .|.+.+
T Consensus 72 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-~-~v~~~~-- 146 (375)
T PRK06847 72 -FDGVDLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDG-V-TVTFSD-- 146 (375)
T ss_pred -ccceEEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE-E-EEEEcC--
Confidence 1112222211110 11110 0 0122456889999999999999999999999999999876643 3 566655
Q ss_pred cccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccC
Q 006539 256 IAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP 335 (641)
Q Consensus 256 ~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~ 335 (641)
|.++.+|+||+|||.+|.+|+++. +... .+...+...... .++....... ...+.
T Consensus 147 -------------g~~~~ad~vI~AdG~~s~~r~~l~---~~~~----~~~~~g~~~~~~-~~~~~~~~~~-~~~~~--- 201 (375)
T PRK06847 147 -------------GTTGRYDLVVGADGLYSKVRSLVF---PDEP----EPEYTGQGVWRA-VLPRPAEVDR-SLMYL--- 201 (375)
T ss_pred -------------CCEEEcCEEEECcCCCcchhhHhc---CCCC----CceeccceEEEE-EecCCCCccc-eEEEe---
Confidence 578999999999999999998762 2211 122222221110 1222111111 11111
Q ss_pred CCCCCcceEEEEEeCCCeEEEEEEEccCCCCCCCChH---HHHHH-HhcC-C-chhhhcc---CCceeeeccEEeecCCC
Q 006539 336 LDQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPY---EEFQK-FKHH-P-AIKPLLE---GGTVVQYGARTLNEGGL 406 (641)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~---~~~~~-~~~~-p-~i~~~l~---~~~~~~~~~~~i~~~g~ 406 (641)
.++ +...++|..++...+.+..... ........ +.+++ +... + .+..+.+ ....+.+ .+....
T Consensus 202 -~~~--~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 273 (375)
T PRK06847 202 -GPT--TKAGVVPLSEDLMYLFVTEPRP-DNPRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVY----RPLETL 273 (375)
T ss_pred -CCC--cEEEEEcCCCCeEEEEEeccCc-ccccCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceee----ccHhhc
Confidence 111 2234567666554433222211 11112211 12222 2221 2 2222221 1111111 111111
Q ss_pred ccCCccccCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccCCchHHHHHHHHHhhHHHHHHHHHhcccchhh
Q 006539 407 QSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (641)
Q Consensus 407 ~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~~ 486 (641)
...++|..+|++|||||||.++|+.|||+|+||+||..||+.|........+|+.|++.|+++ ....+..++.....+.
T Consensus 274 ~~~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~~~~~~~al~~Y~~~R~~r-~~~~~~~s~~~~~~~~ 352 (375)
T PRK06847 274 LVPAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELARHDSLEAALQAYYARRWER-CRMVVEASARIGRIEI 352 (375)
T ss_pred cCCCCccCCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHH-HHHHHHHHHHhhheec
Confidence 123468889999999999999999999999999999999999976433357899999999865 7777777776665542
Q ss_pred -ccc---hHHHHHHHHH
Q 006539 487 -YGL---LPGLAICGLE 499 (641)
Q Consensus 487 -~g~---~~g~~~~~~~ 499 (641)
.+. ..+.+..++.
T Consensus 353 ~~~~~~~~~~~~~~~~~ 369 (375)
T PRK06847 353 EGGDKAEHAGLMRESME 369 (375)
T ss_pred CCCCccchHHHHHHHHH
Confidence 222 3444444444
No 30
>PRK06185 hypothetical protein; Provisional
Probab=99.96 E-value=1.7e-26 Score=249.75 Aligned_cols=339 Identities=15% Similarity=0.169 Sum_probs=197.1
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHh--hhhhhhcCCCeeeecc
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL--LPQWKQEEAPIRVPVS 182 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l--~~~~~~~~~~~~~~~~ 182 (641)
.+++||+||||||+|+++|+.|++. |++|+|||+.+.... ...+..+.+.++.-+ +..|..........
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~------G~~v~liE~~~~~~~-~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~-- 74 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARA------GVDVTVLEKHADFLR-DFRGDTVHPSTLELMDELGLLERFLELPHQK-- 74 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCccCc-cccCceeChhHHHHHHHcCChhHHhhcccce--
Confidence 3579999999999999999999998 999999999865322 123455666554222 22232211100000
Q ss_pred CccEEEeecCcc---ccCCCC-CCCCCcEEeeHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeCccccc
Q 006539 183 SDKFWFLTKDRA---FSLPSP-FSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIA 257 (641)
Q Consensus 183 ~~~~~~~~~~~~---~~~~~~-~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~ 257 (641)
...+.+...... +++... ......+.+.+..+.+.|.+.+.+. |++++++++++++..++ +.+.+|.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~-~~v~~v~~~~---- 149 (407)
T PRK06185 75 VRTLRFEIGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEG-GRVTGVRART---- 149 (407)
T ss_pred eeeEEEEECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC-CEEEEEEEEc----
Confidence 111222211111 111110 1112356788999999999988775 89999999999998876 4555565542
Q ss_pred cCCCcccccccc-eEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccCC
Q 006539 258 KDGSKKENFQRG-VELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPL 336 (641)
Q Consensus 258 ~~g~~~~~~~~g-~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 336 (641)
. +| .+++||+||+|||.+|.+|+.+ ++.. ...+.. ...+ ...++.....++.....+
T Consensus 150 ~---------~g~~~i~a~~vI~AdG~~S~vr~~~----gi~~--~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~---- 207 (407)
T PRK06185 150 P---------DGPGEIRADLVVGADGRHSRVRALA----GLEV--REFGAP-MDVL--WFRLPREPDDPESLMGRF---- 207 (407)
T ss_pred C---------CCcEEEEeCEEEECCCCchHHHHHc----CCCc--cccCCC-ceeE--EEecCCCCCCCcccceEe----
Confidence 1 13 4799999999999999988854 5542 111111 1111 112222111111122221
Q ss_pred CCCCcceEEEEEeCCCeEEEEEEEccCCCCCCC-ChHHHH-HHHh-cCCchhhhccCCceeeeccEEeecCCCccCCccc
Q 006539 337 DQKTYGGSFLYHMNDRQIALGLVVALNYHNPFL-NPYEEF-QKFK-HHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPV 413 (641)
Q Consensus 337 ~~~~~g~~~~~~~~~~~~~ig~~~~~d~~~~~~-~~~~~~-~~~~-~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~ 413 (641)
.++ |..+++|.+ +...+++....+...... ...+.+ +.+. ..|.+.+.+...+... ....++. .....++|.
T Consensus 208 ~~~--g~~~llP~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~-~~~~~~l-~~~~~~~~~ 282 (407)
T PRK06185 208 GPG--QGLIMIDRG-DYWQCGYVIPKGGYAALRAAGLEAFRERVAELAPELADRVAELKSWD-DVKLLDV-RVDRLRRWH 282 (407)
T ss_pred cCC--cEEEEEcCC-CeEEEEEEecCCCchhhhhhhHHHHHHHHHHhCccHHHHHhhcCCcc-ccEEEEE-ecccccccc
Confidence 111 335677776 677777776443211100 112222 2222 2455544443211111 0111111 112456788
Q ss_pred cCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC----CchHHHHHHHHHhhHHHHHHHHHhcccchh
Q 006539 414 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (641)
Q Consensus 414 ~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~----~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~ 485 (641)
.+|++|+|||||.++|+.|||+|+||+|+..||+.|.+.+.. ...|+.|++.|+.. ....+.....+.++|
T Consensus 283 ~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~~~~~~ 357 (407)
T PRK06185 283 RPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRGRVSDRDLAAVQRRREFP-TRVTQALQRRIQRRL 357 (407)
T ss_pred CCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhhhH-HHHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999999876533 26799999988764 444444444443333
No 31
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.96 E-value=7.3e-27 Score=254.25 Aligned_cols=340 Identities=16% Similarity=0.154 Sum_probs=195.3
Q ss_pred ccEEEECCCHHHHHHHHHHHh----hchhcCCCCcEEEEcCCCCCCCc-----------cccccccChHHHHHh--hhhh
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQ----LCREKNVDLSVCVVEKGAEVGAH-----------IISGNVFEPRALNEL--LPQW 170 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~----~~~~~~~G~~V~viEk~~~~g~~-----------~~~g~~i~~~~l~~l--~~~~ 170 (641)
|||+||||||+|+++|+.|++ . |++|+||||++.+... ...+..+.++++.-+ +..|
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~------G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~ 74 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTK------DLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAW 74 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccC------CCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCch
Confidence 699999999999999999998 7 9999999995432211 012345666655322 2222
Q ss_pred hhcCCCeeeeccCccEEEeecCc--cccCCCCC-CCCCcEEeeHHHHHHHHHHHHHHcC---CEEecCceEEEEEEc---
Q 006539 171 KQEEAPIRVPVSSDKFWFLTKDR--AFSLPSPF-SNRGNYVISLSQLVRWLGGKAEELG---VEIYPGFAASEILYD--- 241 (641)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~v~~~~l~~~L~~~a~~~G---v~i~~g~~v~~i~~~--- 241 (641)
...... .......+.+.+... .+.++... ....++++++..+.+.|.+.+.+.+ ++++++++|++++.+
T Consensus 75 ~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~ 152 (437)
T TIGR01989 75 DHIQSD--RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKY 152 (437)
T ss_pred hhhhhh--cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEecccc
Confidence 221100 000111222222111 12222111 1122678999999999999998865 999999999999753
Q ss_pred --CCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeec
Q 006539 242 --ADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEID 319 (641)
Q Consensus 242 --~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 319 (641)
+++..+.|++.+ |++++||+||+|||.+|.+|+.+ ++.. ....... .++.......
T Consensus 153 ~~~~~~~v~v~~~~---------------g~~i~a~llVgADG~~S~vR~~~----gi~~-~g~~y~q--~~~v~~v~~~ 210 (437)
T TIGR01989 153 PNDNSNWVHITLSD---------------GQVLYTKLLIGADGSNSNVRKAA----NIDT-TGWNYNQ--HAVVATLKLE 210 (437)
T ss_pred ccCCCCceEEEEcC---------------CCEEEeeEEEEecCCCChhHHHc----CCCc-cceeecc--EEEEEEEEcc
Confidence 222223566655 67899999999999999999965 5552 1111111 1221111221
Q ss_pred CCCCCCCcEEEEeccCCCCCCcceEEEEEeCCCeEEEEEEEccCCCCC--CCChHHHHHHHhc--------CCc------
Q 006539 320 EGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYHNP--FLNPYEEFQKFKH--------HPA------ 383 (641)
Q Consensus 320 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~~~~d~~~~--~~~~~~~~~~~~~--------~p~------ 383 (641)
.. ...+.....+ ... |...++|..++...+.+......... .+...+..+.+.. .|.
T Consensus 211 ~~-~~~~~~~~~f---~~~---g~~~~lPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~ 283 (437)
T TIGR01989 211 EA-TENDVAWQRF---LPT---GPIALLPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDY 283 (437)
T ss_pred cC-CCCCeEEEEE---CCC---CCEEEeECCCCCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhccccccccccccccc
Confidence 11 1222222222 122 23456788887777665543211000 1111111111100 000
Q ss_pred -hhhhccC------Cc-----------e-eeeccEEeecCCCccCCccccCCEEEEecCCCCCCCCCccchHHHHHHHHH
Q 006539 384 -IKPLLEG------GT-----------V-VQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGML 444 (641)
Q Consensus 384 -i~~~l~~------~~-----------~-~~~~~~~i~~~g~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~ 444 (641)
+.++++. ++ . .......++. .....++|..+|++|+|||||.++|..|||+|+||+||..
T Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~ 362 (437)
T TIGR01989 284 AMEKLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRAAFPL-GLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVAS 362 (437)
T ss_pred ccccccccccccccccccccccCchhheeecccceeEEe-cccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHH
Confidence 0000000 00 0 0000011111 2234567888999999999999999999999999999999
Q ss_pred HHHHHhccccC------CchHHHHHHHHHhhHHHHHHHHHhcccchhh
Q 006539 445 AAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (641)
Q Consensus 445 lA~~l~~~~~~------~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~~ 486 (641)
||+.|...... ...|+.|++.|+.. ....+...+.+.++|.
T Consensus 363 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~v~~~t~~l~~l~~ 409 (437)
T TIGR01989 363 LVKALAEAVSVGADIGSISSLKPYERERYAK-NVVLLGLVDKLHKLYA 409 (437)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 99999876532 25799999999865 6666677776666664
No 32
>PRK09126 hypothetical protein; Provisional
Probab=99.96 E-value=8.7e-27 Score=250.81 Aligned_cols=336 Identities=18% Similarity=0.149 Sum_probs=195.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCC--cccccc--ccChHHHHHhhhhhhhcCCCeeee-
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA--HIISGN--VFEPRALNELLPQWKQEEAPIRVP- 180 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~--~~~~g~--~i~~~~l~~l~~~~~~~~~~~~~~- 180 (641)
|++||+||||||+|+++|+.|++. |++|+|+||.+.... ....|. .+.+.++ +++..+..........
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~-~~L~~lGl~~~~~~~~~ 74 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGS------GLKVTLIERQPLAALADPAFDGREIALTHASR-EILQRLGAWDRIPEDEI 74 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhC------CCcEEEEeCCCcccccCCCCchhHHHhhHHHH-HHHHHCCChhhhccccC
Confidence 579999999999999999999999 999999999876421 111222 3455554 3333332211110000
Q ss_pred ccCccEEEeecCc--cccCCCCC--CCCCcEEeeHHHHHHHHHHHHHH-cCCEEecCceEEEEEEcCCCcEEEEEeCccc
Q 006539 181 VSSDKFWFLTKDR--AFSLPSPF--SNRGNYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMG 255 (641)
Q Consensus 181 ~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g 255 (641)
.....+.+.+... .+.++... ....++.+++..+.+.|.+.+.+ .|++|+++++|++++.++++ + .|++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~-~-~v~~~~-- 150 (392)
T PRK09126 75 SPLRDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG-A-QVTLAN-- 150 (392)
T ss_pred CccceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe-E-EEEEcC--
Confidence 0111222222111 12222111 11235778999999999988754 68999999999999876643 3 566655
Q ss_pred cccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccC
Q 006539 256 IAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP 335 (641)
Q Consensus 256 ~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~ 335 (641)
|.++++|+||+|||.+|.+|+.+ ++.............+ .+.......+...++++
T Consensus 151 -------------g~~~~a~~vI~AdG~~S~vr~~~----g~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-- 206 (392)
T PRK09126 151 -------------GRRLTARLLVAADSRFSATRRQL----GIGADMHDFGRTMLVC-----RMRHELPHHHTAWEWFG-- 206 (392)
T ss_pred -------------CCEEEeCEEEEeCCCCchhhHhc----CCCccccccCCeEEEE-----EEeccCCCCCEEEEEec--
Confidence 57899999999999999999865 4432000111111111 11111111222233321
Q ss_pred CCCCCcceEEEEEeCCCeEEEEEEEccCCCCC--CCChHHHH-HHHhcCCchhhhccCCceeeeccEEeecCCCccCCcc
Q 006539 336 LDQKTYGGSFLYHMNDRQIALGLVVALNYHNP--FLNPYEEF-QKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYP 412 (641)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~ig~~~~~d~~~~--~~~~~~~~-~~~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~ 412 (641)
.+ +..+++|.+++...+++....+.... ... .+.+ +.+.. .+...+........ ....+... ...++|
T Consensus 207 --~~--~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~--~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~ 277 (392)
T PRK09126 207 --YG--QTLALLPLNGHLSSLVLTLPPDQIEALLALD-PEAFAAEVTA--RFKGRLGAMRLVSS-RHAYPLVA-VYAHRF 277 (392)
T ss_pred --CC--CCeEEeECCCCCEEEEEECCHHHHHHHHcCC-HHHHHHHHHH--HHhhhccCeEEcCC-CcEeechH-HHHHHH
Confidence 11 23578899888777776543211000 011 1111 11110 01111110010000 00011111 134678
Q ss_pred ccCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC------CchHHHHHHHHHhhHHHHHHHHHhcccchhh
Q 006539 413 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (641)
Q Consensus 413 ~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~------~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~~ 486 (641)
..+|++|+|||||.++|+.|||+|+||+||..||+.|...+.. ..+|+.|++.|++. ....+..++.+..++.
T Consensus 278 ~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~-~~~~~~~~~~~~~~~~ 356 (392)
T PRK09126 278 VAKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLA-TRPLYHATNAIAALYT 356 (392)
T ss_pred hhcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC
Confidence 8899999999999999999999999999999999999876531 35799999999875 6666677776666664
No 33
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.96 E-value=1.2e-26 Score=248.89 Aligned_cols=342 Identities=16% Similarity=0.122 Sum_probs=181.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCC-CccccccccChHHHHHhhhhhhhcCCCeeeeccCc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVG-AHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g-~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (641)
|.+||+||||||+|+++|+.|++. |++|+||||.+... .....++.+.++++. ++..+..............
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~------G~~v~viE~~~~~~~~~~~~a~~l~~~~~~-~L~~lGl~~~l~~~~~~~~ 73 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKA------GIDNVILERQSRDYVLGRIRAGVLEQGTVD-LLREAGVDERMDREGLVHE 73 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHC------CCCEEEEECCCCcccCCceeEeeECHHHHH-HHHHCCChHHHHhcCceec
Confidence 468999999999999999999999 99999999998521 111223447766542 2222221100000001111
Q ss_pred cEEEeecCc--cccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeC-ccccccCCC
Q 006539 185 KFWFLTKDR--AFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTN-DMGIAKDGS 261 (641)
Q Consensus 185 ~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~-~~g~~~~g~ 261 (641)
.+.+..... .++++............+..+.+.|.+.+.+.|++++++.+++.+...++..+ .|++. + |+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~-~V~~~~~------g~ 146 (390)
T TIGR02360 74 GTEIAFDGQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRP-YVTFERD------GE 146 (390)
T ss_pred ceEEeeCCEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCcc-EEEEEEC------Ce
Confidence 222211111 11122111111112345778889999998888999999998888765332222 46653 3 11
Q ss_pred cccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccCCCCCCc
Q 006539 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTY 341 (641)
Q Consensus 262 ~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 341 (641)
..+++||+||+|||.+|.+|+++ +... .......+..+...+. +......... .+.+ ...
T Consensus 147 -------~~~i~adlvIGADG~~S~VR~~l----~~~~-~~~~~~~~~~~~~~l~--~~~~~~~~~~-~~~~---~~~-- 206 (390)
T TIGR02360 147 -------RHRLDCDFIAGCDGFHGVSRASI----PAEV-LKEFERVYPFGWLGIL--SETPPVSHEL-IYSN---HER-- 206 (390)
T ss_pred -------EEEEEeCEEEECCCCchhhHHhc----Cccc-ceeeeccCCcceEEEe--cCCCCCCCce-EEEe---CCC--
Confidence 14789999999999999999975 2211 0000011111221111 1111111111 1111 111
Q ss_pred ceEEEEEeCC-CeEEEEEEEccCCCCCCCChHHHHHHHhc--CCchhhhccCCceeeeccEEeecCCCccCCccccCCEE
Q 006539 342 GGSFLYHMND-RQIALGLVVALNYHNPFLNPYEEFQKFKH--HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGA 418 (641)
Q Consensus 342 g~~~~~~~~~-~~~~ig~~~~~d~~~~~~~~~~~~~~~~~--~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~~~v~ 418 (641)
+..+++..+ +...+.+....+............+.+.. .+.+.+.+..+..... ...+...+ ..++|..+|++
T Consensus 207 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~l~~~-~~~~~~~grvv 282 (390)
T TIGR02360 207 -GFALCSMRSATRSRYYVQVPLTDKVEDWSDDRFWAELKRRLPSEAAERLVTGPSIEK--SIAPLRSF-VCEPMQYGRLF 282 (390)
T ss_pred -ceEEEeccCCCcceEEEEcCCCCChhhCChhHHHHHHHHhcCchhhhhhccCCccce--eeeeHHhh-ccccCccCCEE
Confidence 112334322 11112222211100011111111111111 1222222222211110 11111111 23567889999
Q ss_pred EEecCCCCCCCCCccchHHHHHHHHHHHHHHhcccc--CCchHHHHHHHHHhhHHHHHHHHHhcccchhh
Q 006539 419 IIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH--EDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (641)
Q Consensus 419 LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~--~~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~~ 486 (641)
|||||||.++|+.|||+|+||+||..||+.|..... ...+|+.|++.++++ +.+..+.++.+.++++
T Consensus 283 LvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~~~~~~al~~Y~~~R~~r-~~~~~~~s~~~~~~~~ 351 (390)
T TIGR02360 283 LAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQEGSSAGIEGYSARALAR-VWKAERFSWWMTSLLH 351 (390)
T ss_pred EEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999986543 247899999988865 6677777777666653
No 34
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.95 E-value=2.2e-26 Score=246.80 Aligned_cols=334 Identities=18% Similarity=0.173 Sum_probs=192.1
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCC-CcEEEEcCCCCCCCcc---ccccccChHHHHHhhhhhhhcCCCeeeeccCc
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVD-LSVCVVEKGAEVGAHI---ISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G-~~V~viEk~~~~g~~~---~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (641)
||+||||||+|+++|+.|++. | ++|+|+||.+...... ..+..+.++++. .+..+..............
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~------G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~-~l~~lgl~~~~~~~~~~~~ 73 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL------GKIKIALIEANSPSAAQPGFDARSLALSYGSKQ-ILEKLGLWPKLAPFATPIL 73 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC------CCceEEEEeCCCccccCCCCCCeeEeccHHHHH-HHHHCCChhhhHhhcCccc
Confidence 799999999999999999999 9 9999999987654321 123456776553 2333221110000011111
Q ss_pred cEEEeecC--ccccCCC--CCCCCCcEEeeHHHHHHHHHHHHHH-cCCEEecCceEEEEEEcCCCcEEEEEeCccccccC
Q 006539 185 KFWFLTKD--RAFSLPS--PFSNRGNYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (641)
Q Consensus 185 ~~~~~~~~--~~~~~~~--~~~~~~~~~v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~ 259 (641)
.+.+.... ....+.. .......|.++|..|.+.|.+.+.+ .|++++++++|++++.++++ + .|++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~-~v~~~~------ 145 (382)
T TIGR01984 74 DIHVSDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-V-RVTLDN------ 145 (382)
T ss_pred eEEEEcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-E-EEEECC------
Confidence 22222111 1111110 0111235889999999999999988 49999999999999877644 3 466554
Q ss_pred CCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccCCCCC
Q 006539 260 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQK 339 (641)
Q Consensus 260 g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 339 (641)
|.+++||+||+|||.+|.+|+++ ++.. ...... ...+........ .........+. ..
T Consensus 146 ---------g~~~~ad~vV~AdG~~S~vr~~l----~~~~-~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~----~~ 203 (382)
T TIGR01984 146 ---------GQQLRAKLLIAADGANSKVRELL----SIPT-EEHDYN--QTALIANIRHEQ--PHQGCAFERFT----PH 203 (382)
T ss_pred ---------CCEEEeeEEEEecCCChHHHHHc----CCCC-cccccC--CEEEEEEEEecC--CCCCEEEEeeC----CC
Confidence 56899999999999999988865 4432 011111 122222122211 11122222211 11
Q ss_pred CcceEEEEEeCCC-eEEEEEEEccCCCCC--CCChHHHHHHHhcCCchhhhccCCceeeeccEEeecCCCccCCccccCC
Q 006539 340 TYGGSFLYHMNDR-QIALGLVVALNYHNP--FLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPG 416 (641)
Q Consensus 340 ~~g~~~~~~~~~~-~~~ig~~~~~d~~~~--~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 416 (641)
|..+++|.+++ ...+.+....+.... .....+..+.+... +...+........ ....+.. ....++|..+|
T Consensus 204 --g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~r 277 (382)
T TIGR01984 204 --GPLALLPLKDNYRSSLVWCLPSKQADTIANLPDAEFLAELQQA--FGWRLGKITQVGE-RKTYPLK-LRIAETHVHPR 277 (382)
T ss_pred --CCeEECcCCCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHH--HhhhccCeEEcCC-ccEeecc-hhhhhheecCC
Confidence 23567787776 555544432211000 01111111122110 1111111000000 0011111 11356788899
Q ss_pred EEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC---CchHHHHHHHHHhhHHHHHHHHHhcccchhh
Q 006539 417 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (641)
Q Consensus 417 v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~---~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~~ 486 (641)
++|+|||||.++|+.|||+|+||+||..||+.|...... ..+|+.|++.++.. ....+..++.+..+|.
T Consensus 278 v~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~l~~Y~~~r~~~-~~~~~~~~~~~~~~~~ 349 (382)
T TIGR01984 278 VVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARIDLGTYALLQEYLRRRQFD-QFITIGLTDGLNRLFS 349 (382)
T ss_pred EEEEeecccccCCccccchhhhHHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999876422 47899999999864 5555566666666664
No 35
>PLN02985 squalene monooxygenase
Probab=99.95 E-value=1.6e-25 Score=246.34 Aligned_cols=360 Identities=15% Similarity=0.207 Sum_probs=204.6
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeee-ecc
Q 006539 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRV-PVS 182 (641)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~-~~~ 182 (641)
....+||+|||||++|+++|+.|++. |++|+|+||...... ...|..+.+..+. .+..+...+..... ...
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~------G~~V~vlEr~~~~~~-~~~g~~L~p~g~~-~L~~LGl~d~l~~~~~~~ 111 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKD------GRRVHVIERDLREPE-RMMGEFMQPGGRF-MLSKLGLEDCLEGIDAQK 111 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHc------CCeEEEEECcCCCCc-cccccccCchHHH-HHHHcCCcchhhhccCcc
Confidence 45678999999999999999999999 999999999864322 2245667766553 22222211110000 011
Q ss_pred CccEEEeecCcc--ccCCCCCC----CCCcEEeeHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeCccc
Q 006539 183 SDKFWFLTKDRA--FSLPSPFS----NRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMG 255 (641)
Q Consensus 183 ~~~~~~~~~~~~--~~~~~~~~----~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g 255 (641)
...+.+...... ..++.... ...++.+++..|.+.|.+++.+. ||+++.+ +++++..++ +.+.+|++.+
T Consensus 112 ~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~-~~v~gV~~~~-- 187 (514)
T PLN02985 112 ATGMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEK-GVIKGVTYKN-- 187 (514)
T ss_pred cccEEEEECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcC-CEEEEEEEEc--
Confidence 122222222211 22221111 12247889999999999999876 6999876 577776654 5566777643
Q ss_pred cccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCC-CCCCcEEEEecc
Q 006539 256 IAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGK-HNPGEILHTLGW 334 (641)
Q Consensus 256 ~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~g~~~~~~~~ 334 (641)
++|+. .++.||+||+|||.+|.+|+++. ... .....+..++. +.... ..++.. |.+
T Consensus 188 --~dG~~-------~~~~AdLVVgADG~~S~vR~~l~----~~~---~~~~s~~~~~~----~~~~~~~~~~~~-~~~-- 244 (514)
T PLN02985 188 --SAGEE-------TTALAPLTVVCDGCYSNLRRSLN----DNN---AEVLSYQVGYI----SKNCRLEEPEKL-HLI-- 244 (514)
T ss_pred --CCCCE-------EEEECCEEEECCCCchHHHHHhc----cCC---CcceeEeEEEE----EccccCCCCCcc-eEE--
Confidence 23321 46789999999999999999772 221 11122233332 11111 122221 222
Q ss_pred CCCCCCcceEEEEEeCCCeEEEEEEEccCCCCCCCChHHHHHHHhc--CC----chhhhccCC-ceeeeccEEeecCCCc
Q 006539 335 PLDQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKH--HP----AIKPLLEGG-TVVQYGARTLNEGGLQ 407 (641)
Q Consensus 335 ~~~~~~~g~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~--~p----~i~~~l~~~-~~~~~~~~~i~~~g~~ 407 (641)
+... +...+|+.+++...+.+....+.. +.....+....++. .| .+.+.+..+ .... ..+..+... .
T Consensus 245 -~~~~--~~~l~ypi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~-~~~~~p~~~-l 318 (514)
T PLN02985 245 -MSKP--SFTMLYQISSTDVRCVFEVLPDNI-PSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGA-HIKVVPTKR-M 318 (514)
T ss_pred -cCCC--ceEEEEEeCCCeEEEEEEEeCCCC-CCcChhhHHHHHHhccccccCHHHHHHHHhhccccc-ceeecCccc-c
Confidence 1111 335678888877766555533211 11121111111111 12 233322210 0000 011111111 1
Q ss_pred cCCccccCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccc--cC----CchHHHHHHHHHhhHHHHHHHHHhcc
Q 006539 408 SIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVL--HE----DSNMEIYWDTLQKSWVWQELQRARNY 481 (641)
Q Consensus 408 ~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~--~~----~~~l~~Ye~~~~~~~~~~~~~~~~~~ 481 (641)
+...+..+|++|||||||+++|+.|||+++|++||.+|++.|.... .+ ..+|+.|+..|+++ .......++..
T Consensus 319 ~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r-~~~i~~la~al 397 (514)
T PLN02985 319 SATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPM-SATVNTLGNAF 397 (514)
T ss_pred cccccCCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcc-hhHHHHHHHHH
Confidence 2234456799999999999999999999999999999999997532 11 36899999988865 66666667766
Q ss_pred cchhhc--cchHHHHHHHHHHHHhcC
Q 006539 482 RPAFEY--GLLPGLAICGLEHYILRG 505 (641)
Q Consensus 482 ~~~~~~--g~~~g~~~~~~~~~~~~~ 505 (641)
.++|.. .-....+..+...++..|
T Consensus 398 ~~~f~a~~~~~~~~l~~~~f~y~~~g 423 (514)
T PLN02985 398 SQVLVASTDEAKEAMRQGCYDYLCSG 423 (514)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 666632 222344555555565544
No 36
>PRK06184 hypothetical protein; Provisional
Probab=99.95 E-value=6.5e-26 Score=251.31 Aligned_cols=331 Identities=17% Similarity=0.140 Sum_probs=185.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccE
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (641)
++||+||||||+||++|+.|++. |++|+||||.+.+... ..+..+.+++++ ++..+...............+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~------Gi~v~viE~~~~~~~~-~ra~~l~~~~~e-~l~~lGl~~~l~~~~~~~~~~ 74 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARR------GVSFRLIEKAPEPFPG-SRGKGIQPRTQE-VFDDLGVLDRVVAAGGLYPPM 74 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC------CCcEEEEeCCCCCCcC-ccceeecHHHHH-HHHHcCcHHHHHhcCccccce
Confidence 58999999999999999999999 9999999998765432 245567777763 333332211000000000011
Q ss_pred EEeecCcc---ccCC-----CCCC-CCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccc
Q 006539 187 WFLTKDRA---FSLP-----SPFS-NRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA 257 (641)
Q Consensus 187 ~~~~~~~~---~~~~-----~~~~-~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~ 257 (641)
.+...... ..+. .... ....+.+++..+.+.|.+.+.+.|++|++++++++++.++++ + .|++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~---- 148 (502)
T PRK06184 75 RIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADG-V-TARVAG---- 148 (502)
T ss_pred eEEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc-E-EEEEEe----
Confidence 11110000 0000 0000 112467889999999999999999999999999999888755 3 344321
Q ss_pred cCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccc-eeeEEEEEEeecCCCCCCCcEEEEeccCC
Q 006539 258 KDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQT-YALGIKEVWEIDEGKHNPGEILHTLGWPL 336 (641)
Q Consensus 258 ~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 336 (641)
. .++.+++||+||+|||.+|.+|+++ ++... ...... ..+-.. ..++. ... ...+.+ ..
T Consensus 149 ~--------~~~~~i~a~~vVgADG~~S~vR~~l----gi~~~-g~~~~~~~~~~~~--~~~~~--~~~-~~~~~~--~~ 208 (502)
T PRK06184 149 P--------AGEETVRARYLVGADGGRSFVRKAL----GIGFP-GETLGIDRMLVAD--VSLTG--LDR-DAWHQW--PD 208 (502)
T ss_pred C--------CCeEEEEeCEEEECCCCchHHHHhC----CCCcc-cCcCCCceEEEEE--EEeec--CCC-cceEEc--cC
Confidence 0 0147899999999999999999965 44421 111111 111111 11111 111 112222 11
Q ss_pred CCCCcceEEEEEeCCC-eEEEEEEEccCCCCCCCChHHHHHH-HhcCCchhhhccCCceeeeccEEeecCCCccCCcccc
Q 006539 337 DQKTYGGSFLYHMNDR-QIALGLVVALNYHNPFLNPYEEFQK-FKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVF 414 (641)
Q Consensus 337 ~~~~~g~~~~~~~~~~-~~~ig~~~~~d~~~~~~~~~~~~~~-~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~ 414 (641)
.. .+...++|..++ ...+.+....+ ......+ +.+.+ +........ +. -..+.+.. .. .......++|..
T Consensus 209 ~~--~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~l~~~~~~~~-~~-~~~~~~~~-~~-~~~~~~a~~~~~ 280 (502)
T PRK06184 209 GD--MGMIALCPLPGTDLFQIQAPLPPG-GEPDLSA-DGLTALLAERTGRTD-IR-LHSVTWAS-AF-RMNARLADRYRV 280 (502)
T ss_pred CC--CcEEEEEEccCCCeEEEEEEcCCC-ccCCCCH-HHHHHHHHHhcCCCC-cc-eeeeeeee-cc-ccceeEhhhhcC
Confidence 11 122345666543 33333322211 1111222 22222 221100000 00 00111100 00 001112357888
Q ss_pred CCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC--CchHHHHHHHHHhhHHHHHHHHHhc
Q 006539 415 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE--DSNMEIYWDTLQKSWVWQELQRARN 480 (641)
Q Consensus 415 ~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~--~~~l~~Ye~~~~~~~~~~~~~~~~~ 480 (641)
+|++|+|||||.++|+.|||+|+||+||..||..|...+.. ...|+.|++.|+.. ....+..++.
T Consensus 281 gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~lL~~Ye~eR~p~-~~~~~~~s~~ 347 (502)
T PRK06184 281 GRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAGAPEALLDTYEEERRPV-AAAVLGLSTE 347 (502)
T ss_pred CcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 99999999999999999999999999999999998876543 46799999999874 5545554444
No 37
>PRK06996 hypothetical protein; Provisional
Probab=99.95 E-value=7.6e-26 Score=243.60 Aligned_cols=335 Identities=18% Similarity=0.163 Sum_probs=191.5
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCC----CcEEEEcCCCCCCCc-cccccccChHHHHH--hhhhhhhcCCC
Q 006539 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVD----LSVCVVEKGAEVGAH-IISGNVFEPRALNE--LLPQWKQEEAP 176 (641)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G----~~V~viEk~~~~g~~-~~~g~~i~~~~l~~--l~~~~~~~~~~ 176 (641)
..+++||+||||||+|+++|+.|++. | ++|+|+|+.+..... ...+..+.+.++.- -+..|.....+
T Consensus 8 ~~~~~dv~IvGgGpaG~~~A~~L~~~------g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~ 81 (398)
T PRK06996 8 AAPDFDIAIVGAGPVGLALAGWLARR------SATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATP 81 (398)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHhcC------CCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCc
Confidence 44679999999999999999999997 6 579999998643211 11244566666532 23334432222
Q ss_pred eeeeccCccEEEeecC--ccccC--CCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeC
Q 006539 177 IRVPVSSDKFWFLTKD--RAFSL--PSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTN 252 (641)
Q Consensus 177 ~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~ 252 (641)
+. .+++.+.. ....+ ........+|++++..|.+.|.+.+.+.|++++++++++++..++++ + .|++.
T Consensus 82 ~~------~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~-v-~v~~~ 153 (398)
T PRK06996 82 IE------HIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG-V-TLALG 153 (398)
T ss_pred cc------EEEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe-E-EEEEC
Confidence 21 11111100 01111 11111123689999999999999999999999999999999877654 2 35554
Q ss_pred ccccccCCCcccccccceEEEcCEEEEcCCC-CCchhHHHHHHcCCCcccccCccce-eeEEEEEEeecCCCCCCCcEEE
Q 006539 253 DMGIAKDGSKKENFQRGVELRGRITLLAEGC-RGSLSEKLIKNFKLREKSHAQHQTY-ALGIKEVWEIDEGKHNPGEILH 330 (641)
Q Consensus 253 ~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~-~s~vr~~l~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~~ 330 (641)
+. +| +.+++||+||+|||. +|.+|+.+ +... ....+ ...+...+.. ....++....
T Consensus 154 ~~----~g--------~~~i~a~lvIgADG~~~s~~r~~~----~~~~----~~~~~~~~~~~~~v~~--~~~~~~~~~~ 211 (398)
T PRK06996 154 TP----QG--------ARTLRARIAVQAEGGLFHDQKADA----GDSA----RRRDYGQTAIVGTVTV--SAPRPGWAWE 211 (398)
T ss_pred CC----Cc--------ceEEeeeEEEECCCCCchHHHHHc----CCCc----eeeecCCeEEEEEEEc--cCCCCCEEEE
Confidence 30 11 268999999999997 46666643 3331 11111 1222222222 1112222221
Q ss_pred EeccCCCCCCcceEEEEEeCCCe---EEEEEEEccCCCC--CCCChHHHHHHHhcCCchhhhccCCceeeeccE-EeecC
Q 006539 331 TLGWPLDQKTYGGSFLYHMNDRQ---IALGLVVALNYHN--PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGAR-TLNEG 404 (641)
Q Consensus 331 ~~~~~~~~~~~g~~~~~~~~~~~---~~ig~~~~~d~~~--~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~-~i~~~ 404 (641)
.+ ... |...++|..++. ..+.+....+... ......+..+.+.. .+...+. ........ .++..
T Consensus 212 ~~---~~~---G~~~~lp~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~--~~~~~~~~~~~~l~ 281 (398)
T PRK06996 212 RF---THE---GPLALLPLGGPRQADYALVWCCAPDEAARRAALPDDAFLAELGA--AFGTRMG--RFTRIAGRHAFPLG 281 (398)
T ss_pred Ee---cCC---CCeEEeECCCCCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHH--HhccccC--ceEEecceEEEeee
Confidence 12 111 223455766543 3433333211000 00111111111111 0111111 11111111 11111
Q ss_pred CCccCCccccCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccCCchHHHHHHHHHhhHHHHHHHHHhcccch
Q 006539 405 GLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYRPA 484 (641)
Q Consensus 405 g~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~ 484 (641)
....++|..+|++|+|||||.++|+.|||+|+||+||..||+.|........+|+.|++.|+.. ....+..++.+.++
T Consensus 282 -~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~L~~Y~~~R~~~-~~~~~~~s~~l~~~ 359 (398)
T PRK06996 282 -LNAARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDHGATPLALATFAARRALD-RRVTIGATDLLPRL 359 (398)
T ss_pred -cccccceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 2345678899999999999999999999999999999999999976332347799999999765 66666777777666
Q ss_pred hh
Q 006539 485 FE 486 (641)
Q Consensus 485 ~~ 486 (641)
|.
T Consensus 360 ~~ 361 (398)
T PRK06996 360 FT 361 (398)
T ss_pred Hc
Confidence 65
No 38
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.95 E-value=6.5e-26 Score=244.90 Aligned_cols=334 Identities=13% Similarity=0.108 Sum_probs=191.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCC-CCC--CCc-cccccccChHHHHHhhhh---hhhcCCCeee
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKG-AEV--GAH-IISGNVFEPRALNELLPQ---WKQEEAPIRV 179 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~-~~~--g~~-~~~g~~i~~~~l~~l~~~---~~~~~~~~~~ 179 (641)
.+||+||||||+||++|+.|++. |++|+|+|+. +.. +.. ...+..+.++++ +++.. |.......
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~------G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~-~~L~~lGl~~~l~~~~-- 74 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKES------DLRIAVIEGQLPEEALNELPDVRVSALSRSSE-HILRNLGAWQGIEARR-- 74 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhC------CCEEEEEcCCCCcccccCCCCcceecccHHHH-HHHHhCCchhhhhhhh--
Confidence 58999999999999999999999 9999999996 221 110 012345677655 23333 32211100
Q ss_pred eccCccEEEeecC--ccccCCCCC--CCCCcEEeeHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeCcc
Q 006539 180 PVSSDKFWFLTKD--RAFSLPSPF--SNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDM 254 (641)
Q Consensus 180 ~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~ 254 (641)
......+.+.+.. ..+.++... ....++.+.+..+.+.|.+.+.+. |++++++++|+++..++++ + .|++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~-~-~v~~~~- 151 (405)
T PRK08850 75 AAPYIAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE-A-WLTLDN- 151 (405)
T ss_pred CCcccEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe-E-EEEECC-
Confidence 0011122222211 111222111 112367889999999999998775 6999999999999877643 3 566655
Q ss_pred ccccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEecc
Q 006539 255 GIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGW 334 (641)
Q Consensus 255 g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~ 334 (641)
|.+++||+||+|||.+|.+|+++ ++... .......++......+ ....+.....+
T Consensus 152 --------------g~~~~a~lvIgADG~~S~vR~~~----~~~~~---~~~~~~~~~~~~v~~~--~~~~~~~~~~~-- 206 (405)
T PRK08850 152 --------------GQALTAKLVVGADGANSWLRRQM----DIPLT---HWDYGHSALVANVRTV--DPHNSVARQIF-- 206 (405)
T ss_pred --------------CCEEEeCEEEEeCCCCChhHHHc----CCCee---EEeeccEEEEEEEEcc--CCCCCEEEEEE--
Confidence 67899999999999999999965 44420 1111112222222221 11222222222
Q ss_pred CCCCCCcceEEEEEeCC-CeEEEEEEEccCCCC--CCCChHHHHHHHhcCCchhhhccCCceeeeccEEeecCCCccCCc
Q 006539 335 PLDQKTYGGSFLYHMND-RQIALGLVVALNYHN--PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPY 411 (641)
Q Consensus 335 ~~~~~~~g~~~~~~~~~-~~~~ig~~~~~d~~~--~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~ 411 (641)
... |...++|..+ +..++.+....+... ......+..+.+.. .+...+...+.... ....+. .....++
T Consensus 207 -~~~---g~~~~lp~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~-~~~~pl-~~~~~~~ 278 (405)
T PRK08850 207 -TPQ---GPLAFLPMSEPNMSSIVWSTEPLRAEALLAMSDEQFNKALTA--EFDNRLGLCEVVGE-RQAFPL-KMRYARD 278 (405)
T ss_pred -cCC---CceEEEECCCCCeEEEEEECCHHHHHHHHcCCHHHHHHHHHH--HHhhhhCcEEEccc-ccEEec-ceeeccc
Confidence 112 2245678765 344555443211000 00111111111110 00001100000000 001111 1123467
Q ss_pred cccCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhcccc---C---CchHHHHHHHHHhhHHHHHHHHHhcccchh
Q 006539 412 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH---E---DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (641)
Q Consensus 412 ~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~---~---~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~ 485 (641)
|..+|++|+|||||.++|+.|||+|+||+||..||+.|..... . ..+|+.|++.|+.. ....+..++.+.++|
T Consensus 279 ~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~l~~~~ 357 (405)
T PRK08850 279 FVRERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAE-AAKMIAAMQGFRDLF 357 (405)
T ss_pred cccCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHH-HHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999986542 1 36799999888754 666666666666666
Q ss_pred h
Q 006539 486 E 486 (641)
Q Consensus 486 ~ 486 (641)
.
T Consensus 358 ~ 358 (405)
T PRK08850 358 S 358 (405)
T ss_pred C
Confidence 4
No 39
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.95 E-value=1.1e-25 Score=242.64 Aligned_cols=330 Identities=14% Similarity=0.129 Sum_probs=185.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-+|+||||||+||++|+.|++. |++|+|+||.+.+.. ...|..+.++++..| ..+...............+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~------G~~V~i~E~~~~~~~-~g~gi~l~~~~~~~L-~~~Gl~~~l~~~~~~~~~~~ 74 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR------GWAVTIIEKAQELSE-VGAGLQLAPNAMRHL-ERLGVADRLSGTGVTPKALY 74 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCccCc-CCccceeChhHHHHH-HHCCChHHHhhcccCcceEE
Confidence 4699999999999999999998 999999999876532 224556677665333 22221110000011111222
Q ss_pred EeecCc-c--c--cC---CCCCCCCCcEEeeHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeCcccccc
Q 006539 188 FLTKDR-A--F--SL---PSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (641)
Q Consensus 188 ~~~~~~-~--~--~~---~~~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~ 258 (641)
+.+... . . .. .........+.++|..|.+.|.+.+.+. |++++++++|+++..++++ + .|++.+.
T Consensus 75 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~-v-~v~~~~~---- 148 (400)
T PRK06475 75 LMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS-I-TATIIRT---- 148 (400)
T ss_pred EecCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc-e-EEEEEeC----
Confidence 221110 0 0 00 0000111234689999999999998764 7999999999999876643 3 4444320
Q ss_pred CCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeec---CCC----CCCCcEEEE
Q 006539 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEID---EGK----HNPGEILHT 331 (641)
Q Consensus 259 ~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~----~~~g~~~~~ 331 (641)
+ ++.++++|+||+|||.+|.+|+++ +... .... ....+......+ ... ...+....+
T Consensus 149 ~--------~~~~~~adlvIgADG~~S~vR~~~----~~~~-~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (400)
T PRK06475 149 N--------SVETVSAAYLIACDGVWSMLRAKA----GFSK-ARFS---GHIAWRTTLAADALPASFLSAMPEHKAVSAW 212 (400)
T ss_pred C--------CCcEEecCEEEECCCccHhHHhhc----CCCC-CCcC---CceEEEEEeehhhcchhhhhhcccCCceEEE
Confidence 0 136789999999999999999975 2221 0111 112222222111 100 011111222
Q ss_pred eccCCCCCCcceEEEEEeCCCeEEEEEEEccC-C-CCCCC--ChHHHHH-HHhc-CCchhhhccCCceeeeccEEeecCC
Q 006539 332 LGWPLDQKTYGGSFLYHMNDRQIALGLVVALN-Y-HNPFL--NPYEEFQ-KFKH-HPAIKPLLEGGTVVQYGARTLNEGG 405 (641)
Q Consensus 332 ~~~~~~~~~~g~~~~~~~~~~~~~ig~~~~~d-~-~~~~~--~~~~~~~-~~~~-~p~i~~~l~~~~~~~~~~~~i~~~g 405 (641)
++ ++ +....||+.++.....+....+ . ...+. ...+.+. .+.. .|.+..+++...... ..+-..
T Consensus 213 ~g----~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~----~~~l~~ 282 (400)
T PRK06475 213 LG----NK--AHFIAYPVKGGKFFNFVAITGGENPGEVWSKTGDKAHLKSIYADWNKPVLQILAAIDEWT----YWPLFE 282 (400)
T ss_pred Ec----CC--CEEEEEEccCCcEEEEEEEEcCCCCcccCCCCCCHHHHHHHhcCCChHHHHHHhcCCcee----ECcCcc
Confidence 21 11 2345778876544322222111 0 11111 1122222 2222 344555554322211 111111
Q ss_pred CccCCccccCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccCCchHHHHHHHHHhhHHHHHHHHHh
Q 006539 406 LQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRAR 479 (641)
Q Consensus 406 ~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~~~~l~~Ye~~~~~~~~~~~~~~~~ 479 (641)
....+.|..+|++|||||||.++|+.|||+|+||+||..||++|... .-..+|+.|++.|+.+ +.+.+..++
T Consensus 283 ~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~-~~~~aL~~Ye~~R~~r-~~~~~~~s~ 354 (400)
T PRK06475 283 MADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALDSD-DQSAGLKRFDSVRKER-IAAVAKRGQ 354 (400)
T ss_pred cCCCcceecCCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 11223345689999999999999999999999999999999999642 1247899999999875 665555554
No 40
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.95 E-value=4.6e-26 Score=244.81 Aligned_cols=331 Identities=16% Similarity=0.140 Sum_probs=189.4
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhh---hhhcCCCeeeec
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQ---WKQEEAPIRVPV 181 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~---~~~~~~~~~~~~ 181 (641)
+..+||+||||||+|+++|+.|++. |++|+|||+.+.... . .+..+.+.++ +++.. |..... ...
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~------G~~v~liE~~~~~~~-~-r~~~l~~~s~-~~l~~lgl~~~~~~---~~~ 72 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARA------GASVALVAPEPPYAD-L-RTTALLGPSI-RFLERLGLWARLAP---HAA 72 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC------CCeEEEEeCCCCCCC-c-chhhCcHHHH-HHHHHhCchhhhHh---hcc
Confidence 3468999999999999999999998 999999999875432 1 2234555443 23322 322110 001
Q ss_pred cCccEEEeecCcc------ccCCC--CCCCCCcEEeeHHHHHHHHHHHHHHcC-CEEecCceEEEEEEcCCCcEEEEEeC
Q 006539 182 SSDKFWFLTKDRA------FSLPS--PFSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTN 252 (641)
Q Consensus 182 ~~~~~~~~~~~~~------~~~~~--~~~~~~~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~~V~~~ 252 (641)
....+.+.+.... ..+.. ......+|.+++..+.+.|.+.+.+.+ +. +++++|+++..++++ + .|++.
T Consensus 73 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~-~-~v~~~ 149 (388)
T PRK07494 73 PLQSMRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE-V-TVTLA 149 (388)
T ss_pred eeeEEEEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe-E-EEEEC
Confidence 1112222221111 11110 011223688999999999999998875 55 789999999877644 3 46665
Q ss_pred ccccccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEe
Q 006539 253 DMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTL 332 (641)
Q Consensus 253 ~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~ 332 (641)
+ |.++++|+||+|||.+|.+|+.+ ++... .......+ +.. .+.......+.....+
T Consensus 150 ~---------------g~~~~a~~vI~AdG~~S~vr~~~----g~~~~-~~~~~~~~--~~~--~v~~~~~~~~~~~~~~ 205 (388)
T PRK07494 150 D---------------GTTLSARLVVGADGRNSPVREAA----GIGVR-TWSYPQKA--LVL--NFTHSRPHQNVSTEFH 205 (388)
T ss_pred C---------------CCEEEEeEEEEecCCCchhHHhc----CCCce-ecCCCCEE--EEE--EEeccCCCCCEEEEEe
Confidence 4 57899999999999999998865 44420 11111122 211 2221111122111121
Q ss_pred ccCCCCCCcceEEEEEeCCCeEEEEEEEccCCCC--CCCChHHHHHHHhcCCchhhhccCCceeeeccEEeecCCCccCC
Q 006539 333 GWPLDQKTYGGSFLYHMNDRQIALGLVVALNYHN--PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIP 410 (641)
Q Consensus 333 ~~~~~~~~~g~~~~~~~~~~~~~ig~~~~~d~~~--~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~ 410 (641)
... |..+++|..++..++.+....+... ...+..+..+.+.. .+.+++........ ....+... ...+
T Consensus 206 ---~~~---g~~~~~Pl~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~-~~~~~l~~-~~~~ 275 (388)
T PRK07494 206 ---TEG---GPFTQVPLPGRRSSLVWVVRPAEAERLLALSDAALSAAIEE--RMQSMLGKLTLEPG-RQAWPLSG-QVAH 275 (388)
T ss_pred ---CCC---CcEEEEECCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHH--HHhhhcCCeEEccC-CcEeechH-HHHH
Confidence 111 3356788877666655443221100 01111111111211 12222221111100 01111111 1224
Q ss_pred ccccCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC---CchHHHHHHHHHhhHHHHHHHHHhcccchh
Q 006539 411 YPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (641)
Q Consensus 411 ~~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~---~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~ 485 (641)
+|..+|++|+|||||.++|+.|||+|+||+||..||+.|...... ...|+.|++.|+.. +...+.......+.|
T Consensus 276 ~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~~~~~~ 352 (388)
T PRK07494 276 RFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPEDPGSAAVLAAYDRARRPD-ILSRTASVDLLNRSL 352 (388)
T ss_pred hhccCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999875432 37899999999864 433344444444444
No 41
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.95 E-value=1.3e-25 Score=240.77 Aligned_cols=335 Identities=13% Similarity=0.117 Sum_probs=186.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCC--CC--c-cccccccChHHHHHhhhhhhhcCCCeee-e
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV--GA--H-IISGNVFEPRALNELLPQWKQEEAPIRV-P 180 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~--g~--~-~~~g~~i~~~~l~~l~~~~~~~~~~~~~-~ 180 (641)
.+||+||||||+|+++|+.|++. |++|+|||+.+.. .. . ......+.++++. ++..+......... .
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~------G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~-~L~~lG~~~~~~~~~~ 75 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQ------GRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVD-LLESLGAWSSIVAMRV 75 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhC------CCcEEEEcCCCcccCCCCCCCCccEEEecHHHHH-HHHHCCCchhhhHhhC
Confidence 48999999999999999999999 9999999987521 10 0 0011256776653 22332211100000 0
Q ss_pred ccCccEEEee-cCccccCCCC-C-CCCCcEEeeHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeCcccc
Q 006539 181 VSSDKFWFLT-KDRAFSLPSP-F-SNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (641)
Q Consensus 181 ~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~ 256 (641)
.....+.... ......++.. . ....+|++.+..|...|.+.+.+. |++++++++|++++.++++ + .|++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~-~-~v~~~~--- 150 (384)
T PRK08849 76 CPYKRLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG-N-RVTLES--- 150 (384)
T ss_pred CccceEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe-E-EEEECC---
Confidence 0001111111 1111112111 1 111257788888999998887764 6999999999999887754 3 466665
Q ss_pred ccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccCC
Q 006539 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPL 336 (641)
Q Consensus 257 ~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 336 (641)
|.++++|+||+|||.+|.+|+++ ++.. .......+.. +..+.......+.....+ ++
T Consensus 151 ------------g~~~~~~lvIgADG~~S~vR~~~----gi~~-~~~~~~~~~~----v~~~~~~~~~~~~~~~~~-~~- 207 (384)
T PRK08849 151 ------------GAEIEAKWVIGADGANSQVRQLA----GIGI-TAWDYRQHCM----LINVETEQPQQDITWQQF-TP- 207 (384)
T ss_pred ------------CCEEEeeEEEEecCCCchhHHhc----CCCc-eeccCCCeEE----EEEEEcCCCCCCEEEEEe-CC-
Confidence 67899999999999999999965 4331 0111111111 111221111222222111 11
Q ss_pred CCCCcceEEEEEeCCCeEEEEEEEccC-C-CCCCCChHHHHHHHhcCCchhhhccCCceeeeccEEeecCCCccCCcccc
Q 006539 337 DQKTYGGSFLYHMNDRQIALGLVVALN-Y-HNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVF 414 (641)
Q Consensus 337 ~~~~~g~~~~~~~~~~~~~ig~~~~~d-~-~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~ 414 (641)
. |...++|+.++...+-+..... . .....++.+..+.+... +...+..-....+ ...+. .....++|..
T Consensus 208 -~---g~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~--~~~~l-~~~~~~~~~~ 278 (384)
T PRK08849 208 -S---GPRSFLPLCGNQGSLVWYDSPKRIKQLSAMNPEQLRSEILRH--FPAELGEIKVLQH--GSFPL-TRRHAQQYVK 278 (384)
T ss_pred -C---CCEEEeEcCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHH--hhhhhCcEEeccc--eEeec-cccccchhcc
Confidence 1 2223466655443333222110 0 00011222222222210 0111111011111 11111 1124568899
Q ss_pred CCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccc-cCCchHHHHHHHHHhhHHHHHHHHHhcccchhh
Q 006539 415 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVL-HEDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (641)
Q Consensus 415 ~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~-~~~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~~ 486 (641)
+|++|+|||||.++|+.|||+|+||+||..|++.|.... ....+|+.|++.|+.+ ........+.+.++|.
T Consensus 279 grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~~~~~~~~ 350 (384)
T PRK08849 279 NNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQGVLNDASFARYERRRRPD-NLLMQTGMDLFYKTFS 350 (384)
T ss_pred CCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhHH-HHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999987432 2247899999999864 5555555555555554
No 42
>PRK06834 hypothetical protein; Provisional
Probab=99.95 E-value=1.7e-25 Score=245.58 Aligned_cols=321 Identities=17% Similarity=0.118 Sum_probs=183.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHh--hhhhhhcCCCeeeeccCc
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL--LPQWKQEEAPIRVPVSSD 184 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l--~~~~~~~~~~~~~~~~~~ 184 (641)
++||+||||||+|+++|+.|++. |++|+||||.+........+..+.+++++-+ +..|....... ......
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~------G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~-~~~~~~ 75 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALA------GVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQG-QVAQVT 75 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcC-Cccccc
Confidence 58999999999999999999999 9999999998753211122456777776322 11121111000 000001
Q ss_pred cEEEeecCccccCCC-CCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcc
Q 006539 185 KFWFLTKDRAFSLPS-PFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKK 263 (641)
Q Consensus 185 ~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~ 263 (641)
.+... .+++.. .......+.+.+..+.+.|.+.+++.|++|+++++++++..++++ + .|++.+
T Consensus 76 ~~~~~----~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-v-~v~~~~---------- 139 (488)
T PRK06834 76 GFAAT----RLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG-V-DVELSD---------- 139 (488)
T ss_pred eeeeE----ecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-E-EEEECC----------
Confidence 11110 011110 011123466788999999999999999999999999999987754 3 455544
Q ss_pred cccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccCCCCCCcce
Q 006539 264 ENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGG 343 (641)
Q Consensus 264 ~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 343 (641)
|.++++|+||+|||.+|.+|+.+ ++.. .........+ +. ...++... ..+ .+ .. ..|.
T Consensus 140 -----g~~i~a~~vVgADG~~S~vR~~l----gi~~-~g~~~~~~~~-~~-dv~~~~~~-~~~--~~-----~~--~~g~ 197 (488)
T PRK06834 140 -----GRTLRAQYLVGCDGGRSLVRKAA----GIDF-PGWDPTTSYL-IA-EVEMTEEP-EWG--VH-----RD--ALGI 197 (488)
T ss_pred -----CCEEEeCEEEEecCCCCCcHhhc----CCCC-CCCCcceEEE-EE-EEEecCCC-Ccc--ee-----eC--CCce
Confidence 46899999999999999999855 5542 1111111111 11 11121110 000 00 01 1121
Q ss_pred EEEEEeC-CCeEEEEEEEccCCCCCCCChHHHHH-HHhc-CCchhhhccCCceeeeccEEeecCCCccCCccccCCEEEE
Q 006539 344 SFLYHMN-DRQIALGLVVALNYHNPFLNPYEEFQ-KFKH-HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAII 420 (641)
Q Consensus 344 ~~~~~~~-~~~~~ig~~~~~d~~~~~~~~~~~~~-~~~~-~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~~~v~Li 420 (641)
..+.+.. ++...+.+............ .+++. .+.. .+ ..+.... ..+.. .++. .....++|..+||+|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~g---~~~~~~~-~~~~~-~~~~-~~r~a~~~~~gRV~La 270 (488)
T PRK06834 198 HAFGRLEDEGPVRVMVTEKQVGATGEPT-LDDLREALIAVYG---TDYGIHS-PTWIS-RFTD-MARQAASYRDGRVLLA 270 (488)
T ss_pred EEEeccCCCCeEEEEEecCCCCCCCCCC-HHHHHHHHHHhhC---CCCcccc-ceeEE-eccc-cceecccccCCcEEEE
Confidence 2233443 44555444322111111122 22222 2221 10 0000001 11110 1111 1123568888999999
Q ss_pred ecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC---CchHHHHHHHHHhhHHHHHHHHHhc
Q 006539 421 GCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARN 480 (641)
Q Consensus 421 GDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~---~~~l~~Ye~~~~~~~~~~~~~~~~~ 480 (641)
|||||.++|+.|||+|++|+||..|+..|...+.. ...|+.|+.+|+.. ..+.+.....
T Consensus 271 GDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g~~~~~lLd~Ye~eRrp~-~~~~~~~t~~ 332 (488)
T PRK06834 271 GDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGTSPESLLDTYHAERHPV-AARVLRNTMA 332 (488)
T ss_pred eeccccCCccccccccccHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 99999999999999999999999999998876643 47899999999864 4444444443
No 43
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.95 E-value=1.8e-25 Score=251.91 Aligned_cols=349 Identities=15% Similarity=0.164 Sum_probs=193.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHh-hchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQ-LCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~-~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (641)
.++||+||||||+||++|+.|++ . |++|+||||.+.... ...+..|.+++++ ++..+..............
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~------Gi~v~IiE~~~~~~~-~grA~gl~prtle-iL~~lGl~d~l~~~g~~~~ 102 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFP------DITTRIVERKPGRLE-LGQADGIACRTME-MFQAFGFAERILKEAYWIN 102 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCC------CCcEEEEEcCCCCCC-CCeeeEEChHHHH-HHHhccchHHHHhhccccc
Confidence 37899999999999999999999 6 999999999875322 1234567888773 4333322111110011111
Q ss_pred cEEEeecCc----c-------ccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcC--CEEecCceEEEEEEcCCC-cEEEEE
Q 006539 185 KFWFLTKDR----A-------FSLPSPFSNRGNYVISLSQLVRWLGGKAEELG--VEIYPGFAASEILYDADN-KVIGIG 250 (641)
Q Consensus 185 ~~~~~~~~~----~-------~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G--v~i~~g~~v~~i~~~~~g-~v~~V~ 250 (641)
.+.+..... . ...+..........+++..+.+.|.+.+.+.| +++.+++++++++.++++ .-+.|+
T Consensus 103 ~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~ 182 (634)
T PRK08294 103 ETAFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVT 182 (634)
T ss_pred ceEEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEE
Confidence 111111100 0 01111111122356889999999999998876 578999999999876532 222466
Q ss_pred eCccccccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEE
Q 006539 251 TNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILH 330 (641)
Q Consensus 251 ~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~ 330 (641)
+.+..-.++|+ .++++||+||+|||++|.+|+++ ++.. .........++..+.... ..+.....
T Consensus 183 l~~~~~~~~g~-------~~tv~A~~lVGaDGa~S~VR~~l----gi~~--~G~~~~~~~~v~dv~~~~---~~p~~~~~ 246 (634)
T PRK08294 183 LRRTDGEHEGE-------EETVRAKYVVGCDGARSRVRKAI----GREL--RGDSANHAWGVMDVLAVT---DFPDIRLK 246 (634)
T ss_pred EEECCCCCCCc-------eEEEEeCEEEECCCCchHHHHhc----CCCc--cCCcccceEEEEEEEEcc---CCCCcceE
Confidence 64310001222 16899999999999999999976 4442 111111122332221111 12221111
Q ss_pred EeccCCCCCCcceEEEEEeCCCe-EEEEEEEcc-CC-CC---CCCChHHHHHHHhc--CCchhhhccCCceeee-ccEEe
Q 006539 331 TLGWPLDQKTYGGSFLYHMNDRQ-IALGLVVAL-NY-HN---PFLNPYEEFQKFKH--HPAIKPLLEGGTVVQY-GARTL 401 (641)
Q Consensus 331 ~~~~~~~~~~~g~~~~~~~~~~~-~~ig~~~~~-d~-~~---~~~~~~~~~~~~~~--~p~i~~~l~~~~~~~~-~~~~i 401 (641)
...+ .. ..|...++|..++. +.+.+.... +. .. ......+..+.+.. .|...++ ..+.| ....+
T Consensus 247 ~~~~-~~--~~g~~~~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~----~~v~w~s~y~i 319 (634)
T PRK08294 247 CAIQ-SA--SEGSILLIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDV----KEVAWWSVYEV 319 (634)
T ss_pred EEEe-cC--CCceEEEEECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCce----eEEeEEecccc
Confidence 1101 11 12345677887763 444332211 10 00 12222222233221 1211111 11221 10000
Q ss_pred e---cCCCccCC---c-cccCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC---CchHHHHHHHHHhhHH
Q 006539 402 N---EGGLQSIP---Y-PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWV 471 (641)
Q Consensus 402 ~---~~g~~~~~---~-~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~---~~~l~~Ye~~~~~~~~ 471 (641)
. ...|...+ . +..+||+|+|||||.++|..|||+|++|+||..|++.|+..+.. ...|+.|+..|++. .
T Consensus 320 ~~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~a~~~lL~tYe~ERrp~-a 398 (634)
T PRK08294 320 GQRLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLHTYSAERQAI-A 398 (634)
T ss_pred cceehhhcccccccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-H
Confidence 0 00010001 1 23589999999999999999999999999999999999876654 47899999999864 6
Q ss_pred HHHHHHHhcccchhh
Q 006539 472 WQELQRARNYRPAFE 486 (641)
Q Consensus 472 ~~~~~~~~~~~~~~~ 486 (641)
.+.+...+....+|.
T Consensus 399 ~~li~~~~~~~~l~~ 413 (634)
T PRK08294 399 QELIDFDREWSTMMA 413 (634)
T ss_pred HHHHHHHHHHHHHhc
Confidence 666677666666664
No 44
>PTZ00367 squalene epoxidase; Provisional
Probab=99.95 E-value=2.8e-25 Score=245.30 Aligned_cols=366 Identities=14% Similarity=0.175 Sum_probs=202.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCcc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (641)
.++||+||||||+|+++|+.|++. |++|+|+||..........|..+.+.++.. +..|...............
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~------G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~-L~~LGL~d~l~~i~~~~~~ 104 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQ------GRKVLMLERDLFSKPDRIVGELLQPGGVNA-LKELGMEECAEGIGMPCFG 104 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhc------CCEEEEEccccccccchhhhhhcCHHHHHH-HHHCCChhhHhhcCcceee
Confidence 579999999999999999999999 999999999762111122455677776533 2333211100001111122
Q ss_pred EEEeec-CccccCCCCCCCCCcEEeeHHHHHHHHHHHH---HHcCCEEecCceEEEEEEcCCC---cEEEEEeCcccc--
Q 006539 186 FWFLTK-DRAFSLPSPFSNRGNYVISLSQLVRWLGGKA---EELGVEIYPGFAASEILYDADN---KVIGIGTNDMGI-- 256 (641)
Q Consensus 186 ~~~~~~-~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a---~~~Gv~i~~g~~v~~i~~~~~g---~v~~V~~~~~g~-- 256 (641)
+.+... .....++.. ....++.++++.+.+.|.+.+ ...+|+++.+ +|+++..++.+ ++.+|++...+.
T Consensus 105 ~~v~~~~G~~~~i~~~-~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~-~v~~l~~~~~~~~~~v~gV~~~~~~~~~ 182 (567)
T PTZ00367 105 YVVFDHKGKQVKLPYG-AGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEG-TVNSLLEEGPGFSERAYGVEYTEAEKYD 182 (567)
T ss_pred eEEEECCCCEEEecCC-CCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEe-EEEEeccccCccCCeeEEEEEecCCccc
Confidence 223222 111222211 112356678999999998887 3457999754 78888665432 355676643110
Q ss_pred --------ccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcE
Q 006539 257 --------AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEI 328 (641)
Q Consensus 257 --------~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~ 328 (641)
+.+.........+.+++||+||+|||.+|.+|+++ +... ..........|+.. ..... ..++.
T Consensus 183 ~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l----~~~~-~~~~~~s~~~g~~~-~~~~l--p~~~~- 253 (567)
T PTZ00367 183 VPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRY----QHYT-PASENHSHFVGLVL-KNVRL--PKEQH- 253 (567)
T ss_pred ccccccccccccccccccccceEEEeCEEEECCCcchHHHHHc----cCCC-CCcCcceEEEEEEE-ecccC--CCCCe-
Confidence 00000011122467899999999999999999977 2221 01122233333221 11111 11221
Q ss_pred EEEeccCCCCCCcceEEEEEeCCCeEEEEEEEccCCCCCCCCh-HHHHHHH-h-cC-Cchhhhc----cCCceeeeccEE
Q 006539 329 LHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNP-YEEFQKF-K-HH-PAIKPLL----EGGTVVQYGART 400 (641)
Q Consensus 329 ~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~~~~d~~~~~~~~-~~~~~~~-~-~~-p~i~~~l----~~~~~~~~~~~~ 400 (641)
.+.+ +.++ +..++||++++...+.+..... ..+.... .+.+... . .. +.+.+.+ .....+ +.
T Consensus 254 ~~v~---~g~~--gpi~~yPl~~~~~r~lv~~~~~-~~p~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l----~~ 323 (567)
T PTZ00367 254 GTVF---LGKT--GPILSYRLDDNELRVLVDYNKP-TLPSLEEQSEWLIEDVAPHLPENMRESFIRASKDTKRI----RS 323 (567)
T ss_pred eEEE---EcCC--ceEEEEEcCCCeEEEEEEecCC-cCCChHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCe----EE
Confidence 1221 1122 3468899998887766554321 1111110 1111111 1 01 1122212 110011 11
Q ss_pred eecCCCccCCccccCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccc-------cC----CchHH----HHHHH
Q 006539 401 LNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVL-------HE----DSNME----IYWDT 465 (641)
Q Consensus 401 i~~~g~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~-------~~----~~~l~----~Ye~~ 465 (641)
.+...+ +...+..+|++|||||||+++|+.|||+|+||+||.+|++.|.... .+ ..+|+ .|+..
T Consensus 324 ~p~~~~-p~~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~~v~~aL~~~~~~Y~~~ 402 (567)
T PTZ00367 324 MPNARY-PPAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMAEIEDAIQAAILSYARN 402 (567)
T ss_pred eeHhhC-CCccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHHhHHHHHHH
Confidence 122211 1224667899999999999999999999999999999999997532 11 24466 99988
Q ss_pred HHhhHHHHHHHHHhcccchhhccchHHHHHHHHHHHHhcC
Q 006539 466 LQKSWVWQELQRARNYRPAFEYGLLPGLAICGLEHYILRG 505 (641)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~ 505 (641)
|+.. .......++...++|.. ..+..+...++..|
T Consensus 403 Rk~~-a~~i~~ls~aL~~lf~~----~~lr~~~~~y~~~g 437 (567)
T PTZ00367 403 RKTH-ASTINILSWALYSVFSS----PALRDACLDYFSLG 437 (567)
T ss_pred hhhh-HHHHHHHHHHHHHHhCh----HHHHHHHHHHHhcC
Confidence 8764 55555666666666654 34666777777655
No 45
>PRK07236 hypothetical protein; Provisional
Probab=99.95 E-value=1.1e-25 Score=241.39 Aligned_cols=326 Identities=17% Similarity=0.126 Sum_probs=179.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCcc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (641)
+..||+||||||+||++|+.|++. |++|+|+||.+........|..+.++.+ +++..+...... ........
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~g~gi~l~~~~~-~~l~~lg~~~~~-~~~~~~~~ 76 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRA------GWDVDVFERSPTELDGRGAGIVLQPELL-RALAEAGVALPA-DIGVPSRE 76 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC------CCCEEEEecCCCCcCCCCceeEeCHHHH-HHHHHcCCCccc-ccccCccc
Confidence 468999999999999999999999 9999999998743222222334677655 344443322111 11111112
Q ss_pred EEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccc
Q 006539 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (641)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~ 265 (641)
..+............ .....+.+..+.+.|.+.+ .+++|+++++|++++.++++ + .|++.+
T Consensus 77 ~~~~~~~g~~~~~~~---~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~-v-~v~~~~------------ 137 (386)
T PRK07236 77 RIYLDRDGRVVQRRP---MPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDGDR-V-TARFAD------------ 137 (386)
T ss_pred eEEEeCCCCEeeccC---CCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCe-E-EEEECC------------
Confidence 222222111100000 0112245677777777543 34789999999999887643 3 466665
Q ss_pred cccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceee-EEEEEE---eecCCC--CCCCcEEEEeccCCCCC
Q 006539 266 FQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYAL-GIKEVW---EIDEGK--HNPGEILHTLGWPLDQK 339 (641)
Q Consensus 266 ~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~-g~~~~~---~~~~~~--~~~g~~~~~~~~~~~~~ 339 (641)
|.++++|+||+|||.+|.+|+++... . .+...+. .+..+. .++... .........+ .++
T Consensus 138 ---g~~~~ad~vIgADG~~S~vR~~l~~~---~-----~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~ 202 (386)
T PRK07236 138 ---GRRETADLLVGADGGRSTVRAQLLPD---V-----RPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQL----GPG 202 (386)
T ss_pred ---CCEEEeCEEEECCCCCchHHHHhCCC---C-----CCCcCCeEEEEEecchHHcCchhhhhcccceEEEE----cCC
Confidence 67899999999999999999987321 1 1111111 111111 111110 0011111111 111
Q ss_pred CcceEEEEEeCC---------CeEEEEEEEccCCC-------------------CCCCChHHHHHHH----h--cCCchh
Q 006539 340 TYGGSFLYHMND---------RQIALGLVVALNYH-------------------NPFLNPYEEFQKF----K--HHPAIK 385 (641)
Q Consensus 340 ~~g~~~~~~~~~---------~~~~ig~~~~~d~~-------------------~~~~~~~~~~~~~----~--~~p~i~ 385 (641)
+..+.|+..+ ....+.+....+.. .+.....+.++.+ . -.|.+.
T Consensus 203 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 280 (386)
T PRK07236 203 --SHILGYPVPGEDGSTEPGKRRYNWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFA 280 (386)
T ss_pred --ceEEEEECCCCCCCcCCCCcEEEEEEEecCCCccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHH
Confidence 1133444321 12223322211100 0000011111111 1 234455
Q ss_pred hhccCCceeeeccEEeecCCCccCCccccCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhcccc-CCchHHHHHH
Q 006539 386 PLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH-EDSNMEIYWD 464 (641)
Q Consensus 386 ~~l~~~~~~~~~~~~i~~~g~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~-~~~~l~~Ye~ 464 (641)
++++..... +.. .+ ... ..++|..+|++|+|||||.++|+.|||+|+||+||..||+.|..... ...+|+.|++
T Consensus 281 ~~~~~~~~~-~~~-~~--~~~-~~~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~~~~~~al~~Ye~ 355 (386)
T PRK07236 281 ELVEATAQP-FVQ-AI--FDL-EVPRMAFGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAAGDIDAALAAWEA 355 (386)
T ss_pred HHHhhCcCc-hhh-hh--hcc-cCcccccCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 555432111 100 01 111 24678889999999999999999999999999999999999986533 2578999999
Q ss_pred HHHhhHHHHHHHHHhcc
Q 006539 465 TLQKSWVWQELQRARNY 481 (641)
Q Consensus 465 ~~~~~~~~~~~~~~~~~ 481 (641)
.|+++ ..+.+..++.+
T Consensus 356 ~R~~r-~~~~~~~s~~~ 371 (386)
T PRK07236 356 ERLAV-GAAIVARGRRL 371 (386)
T ss_pred HhhHH-HHHHHHHHHHH
Confidence 99875 55555555533
No 46
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.95 E-value=1.2e-25 Score=241.76 Aligned_cols=317 Identities=15% Similarity=0.105 Sum_probs=182.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc-----ccccccChHHHHHhhhhhh---hcCCCe
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-----ISGNVFEPRALNELLPQWK---QEEAPI 177 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-----~~g~~i~~~~l~~l~~~~~---~~~~~~ 177 (641)
.+|||+||||||+|+++|+.|++. |++|+|||+.+...... .....+.+.++. ++..|. ......
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~------G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~-~l~~lGl~~~~~~~~ 76 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQH------GFSVAVLEHAAPAPFDADSQPDVRISAISAASVA-LLKGLGVWDAVQAMR 76 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcC------CCEEEEEcCCCCCcccccCCCCceEEeccHHHHH-HHHHcCChhhhhhhh
Confidence 469999999999999999999999 99999999986321100 011245666553 333322 211000
Q ss_pred eeeccCccEEEee-cCccccCCC--CCCCCCcEEeeHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeCc
Q 006539 178 RVPVSSDKFWFLT-KDRAFSLPS--PFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTND 253 (641)
Q Consensus 178 ~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~ 253 (641)
.... ..+.... ....+.+.. ......+|.+++..+.+.|.+.+.+. |++++++++++++..++++ + .|.+.+
T Consensus 77 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-~-~v~~~~ 152 (391)
T PRK08020 77 SHPY--RRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG-W-ELTLAD 152 (391)
T ss_pred Cccc--ceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe-E-EEEECC
Confidence 0000 0111100 011111110 00112357899999999999998876 8999999999999877643 3 466654
Q ss_pred cccccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEec
Q 006539 254 MGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLG 333 (641)
Q Consensus 254 ~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~ 333 (641)
|.+++||+||+|||.+|.+|+.+ ++.. ..+.....++......+. ...+.....+.
T Consensus 153 ---------------g~~~~a~~vI~AdG~~S~vR~~~----~~~~---~~~~y~~~~~~~~~~~~~--~~~~~~~~~~~ 208 (391)
T PRK08020 153 ---------------GEEIQAKLVIGADGANSQVRQMA----GIGV---HGWQYRQSCMLISVKCEN--PPGDSTWQQFT 208 (391)
T ss_pred ---------------CCEEEeCEEEEeCCCCchhHHHc----CCCc---cccCCCceEEEEEEEecC--CCCCEEEEEEc
Confidence 56899999999999999999865 4432 011111122221122221 12222222221
Q ss_pred cCCCCCCcceEEEEEeCCCeEEEEEEEccCCCC--CCCChHHHHH-HHhcCCchhhhccCCceeeeccEEeecCCCccCC
Q 006539 334 WPLDQKTYGGSFLYHMNDRQIALGLVVALNYHN--PFLNPYEEFQ-KFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIP 410 (641)
Q Consensus 334 ~~~~~~~~g~~~~~~~~~~~~~ig~~~~~d~~~--~~~~~~~~~~-~~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~ 410 (641)
.. |...++|..++...+.+........ ... ..+++. .+.. .+...+. .........++-. ....+
T Consensus 209 ---~~---g~~~~~p~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~l~~--~~~~~~~--~~~~~~~~~~pl~-~~~~~ 276 (391)
T PRK08020 209 ---PS---GPRAFLPLFDNWASLVWYDSPARIRQLQAM-SMAQLQQEIAA--HFPARLG--AVTPVAAGAFPLT-RRHAL 276 (391)
T ss_pred ---CC---CCEEEeECCCCcEEEEEECCHHHHHHHHCC-CHHHHHHHHHH--Hhhhhcc--ceEeccccEeecc-eeehh
Confidence 11 2245677776666665443211000 001 112221 1111 0011111 1111111111111 12456
Q ss_pred ccccCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC------CchHHHHHHHHHhh
Q 006539 411 YPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKS 469 (641)
Q Consensus 411 ~~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~------~~~l~~Ye~~~~~~ 469 (641)
+|..+|++|+|||||.++|+.|||+|+||+||..|++.|.+.... ...|+.|++.|+.+
T Consensus 277 ~~~~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~ 341 (391)
T PRK08020 277 QYVQPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMAD 341 (391)
T ss_pred hhccCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999999999876421 36899999988865
No 47
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.95 E-value=1.8e-25 Score=240.37 Aligned_cols=336 Identities=16% Similarity=0.139 Sum_probs=196.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc----ccccccChHHHHHhhhhhhhcCCCe-eee
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI----ISGNVFEPRALNELLPQWKQEEAPI-RVP 180 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~----~~g~~i~~~~l~~l~~~~~~~~~~~-~~~ 180 (641)
|.+||+||||||+||++|+.|++. |++|+|+||........ ..+..+.++++. ++..+....... ...
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~-~l~~~g~~~~~~~~~~ 76 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQS------GLRVALLAPRAPPRPADDAWDSRVYAISPSSQA-FLERLGVWQALDAARL 76 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhC------CCeEEEEecCCCccccCCCCCCceEeecHHHHH-HHHHcCchhhhhhhcC
Confidence 578999999999999999999998 99999999987653210 111345665553 333332111000 000
Q ss_pred ccCccEEEeec-CccccCCCC--CCCCCcEEeeHHHHHHHHHHHHHHcC-CEEecCceEEEEEEcCCCcEEEEEeCcccc
Q 006539 181 VSSDKFWFLTK-DRAFSLPSP--FSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (641)
Q Consensus 181 ~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~~V~~~~~g~ 256 (641)
.....+.+... ...+.+... ......+.+++..+.+.|.+.+++.| ++++ +++++++..++++ + .|++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~-~-~v~~~~--- 150 (388)
T PRK07608 77 APVYDMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDA-A-TLTLAD--- 150 (388)
T ss_pred CcceEEEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe-E-EEEECC---
Confidence 01112222211 111211111 01122577899999999999999887 9998 9999999876643 3 577655
Q ss_pred ccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccCC
Q 006539 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPL 336 (641)
Q Consensus 257 ~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 336 (641)
|.+++||+||+|||.+|.+|+.+ ++.. ...+ ....++....+.+. ...+...+++
T Consensus 151 ------------g~~~~a~~vI~adG~~S~vr~~~----~~~~--~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~---- 205 (388)
T PRK07608 151 ------------GQVLRADLVVGADGAHSWVRSQA----GIKA--ERRP-YRQTGVVANFKAER--PHRGTAYQWF---- 205 (388)
T ss_pred ------------CCEEEeeEEEEeCCCCchHHHhc----CCCc--cccc-cCCEEEEEEEEecC--CCCCEEEEEe----
Confidence 56899999999999999988754 4432 1111 11233322222221 1122222222
Q ss_pred CCCCcceEEEEEeCCCeEEEEEEEccCCCCC--CCChHHHHHHHhcCCchhhhccCCceeeeccEEeecCCCccCCcccc
Q 006539 337 DQKTYGGSFLYHMNDRQIALGLVVALNYHNP--FLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVF 414 (641)
Q Consensus 337 ~~~~~g~~~~~~~~~~~~~ig~~~~~d~~~~--~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~ 414 (641)
..+ +..+++|.+++.+.+.+....+.... ...+.+..+.+.. .+...+..-..+.. ...++. ....++.|..
T Consensus 206 ~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~ 279 (388)
T PRK07608 206 RDD--GILALLPLPDGHVSMVWSARTAHADELLALSPEALAARVER--ASGGRLGRLECVTP-AAGFPL-RLQRVDRLVA 279 (388)
T ss_pred cCC--CCEEEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHH--HHHHhcCCceecCC-cceeec-chhhhhhhhc
Confidence 122 33578899888776655432111000 0111111111111 00011110011000 001111 1123568888
Q ss_pred CCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhcccc-----CCchHHHHHHHHHhhHHHHHHHHHhcccchhh
Q 006539 415 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH-----EDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (641)
Q Consensus 415 ~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~-----~~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~~ 486 (641)
+|++|||||||.++|+.|||+|+||+||..||+.|..... ...+|+.|++.|++. +...++.++....+|.
T Consensus 280 ~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~~~~~~~~l~~Ye~~R~~~-~~~~~~~~~~~~~~~~ 355 (388)
T PRK07608 280 PRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARRED-ILALQVATDGLQRLFA 355 (388)
T ss_pred CceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999986531 136899999999865 6666666666666664
No 48
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.95 E-value=2e-25 Score=241.77 Aligned_cols=337 Identities=18% Similarity=0.168 Sum_probs=193.6
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCC-CcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhc------CCCeeeec
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVD-LSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQE------EAPIRVPV 181 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G-~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~------~~~~~~~~ 181 (641)
+|+||||||+||++|+.|++. | ++|+|+||++.++. ...|-.+.++++..+ ..+... ........
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~------g~~~v~v~Er~~~~~~-~G~gi~l~~~~~~~L-~~lg~~~~~~~~~~~~~~~~ 73 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH------SHLNVQLFEAAPAFGE-VGAGVSFGANAVRAI-VGLGLGEAYTQVADSTPAPW 73 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc------CCCCEEEEecCCcCCC-CccceeeCccHHHHH-HHcCChhHHHHHhcCCCccC
Confidence 599999999999999999998 8 69999999987653 223445677665332 222211 10000000
Q ss_pred cCccEEEeecCccccCCCC-CCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCC
Q 006539 182 SSDKFWFLTKDRAFSLPSP-FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (641)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g 260 (641)
....+.+........+... ....+...++|..|.+.|.+.+. ++.++++++|+++..++++ + .|.+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~-~-~v~~~~------- 142 (414)
T TIGR03219 74 QDIWFEWRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EGIASFGKRATQIEEQAEE-V-QVLFTD------- 142 (414)
T ss_pred cceeEEEEecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCCc-E-EEEEcC-------
Confidence 0000111111000000000 01122346889999999987663 3568899999999887654 3 566655
Q ss_pred CcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCcccee-eEEEEEEeecC---CC----CCC---CcEE
Q 006539 261 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYA-LGIKEVWEIDE---GK----HNP---GEIL 329 (641)
Q Consensus 261 ~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~---~~----~~~---g~~~ 329 (641)
|.++++|+||+|||.+|.+|+.+....+.. ...+...+ ..++.+..... .. ... +...
T Consensus 143 --------g~~~~ad~vVgADG~~S~vR~~l~~~~~~~---~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (414)
T TIGR03219 143 --------GTEYRCDLLIGADGIKSALRDYVLQGQGQA---PVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQ 211 (414)
T ss_pred --------CCEEEeeEEEECCCccHHHHHHhcCccCCC---CCCccccCcEEEEEEeeHHHHhhhhccccccccccccce
Confidence 678999999999999999999885322211 11222222 22222221110 00 000 1111
Q ss_pred EEeccCCCCCCcceEEEEEeCCCeEE-EEEEEccC------CCC--CC---CChHHHHHHHhc-CCchhhhccCCceeee
Q 006539 330 HTLGWPLDQKTYGGSFLYHMNDRQIA-LGLVVALN------YHN--PF---LNPYEEFQKFKH-HPAIKPLLEGGTVVQY 396 (641)
Q Consensus 330 ~~~~~~~~~~~~g~~~~~~~~~~~~~-ig~~~~~d------~~~--~~---~~~~~~~~~~~~-~p~i~~~l~~~~~~~~ 396 (641)
.++ ..+ +..+.||..++... +....... +.. ++ ....+..+.+.. +|.+.++++.......
T Consensus 212 ~~~----~~~--~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~ 285 (414)
T TIGR03219 212 MYL----GLD--GHILTFPVRQGRLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECIPAPTL 285 (414)
T ss_pred EEE----cCC--CeEEEEECCCCcEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHhCCCCCc
Confidence 111 111 22456777666542 22222110 000 01 111222333332 3555555553221110
Q ss_pred ccEEeecCCCccCCccccCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC----CchHHHHHHHHHhhHHH
Q 006539 397 GARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWVW 472 (641)
Q Consensus 397 ~~~~i~~~g~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~----~~~l~~Ye~~~~~~~~~ 472 (641)
..+ .....+++|+.+|++|||||||.|.|+.|||+|+||+||..||+.|...... ..+|+.||+.|+++ +.
T Consensus 286 --~~~--~~~~~~~~w~~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~~~~~al~~Ye~~R~~r-~~ 360 (414)
T TIGR03219 286 --WAL--HDLAELPGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEAYDDVRRPR-AC 360 (414)
T ss_pred --eee--eecccccceeeCcEEEEEcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHhHH-HH
Confidence 011 1123567899999999999999999999999999999999999999764321 47899999999875 77
Q ss_pred HHHHHHhcccchhh
Q 006539 473 QELQRARNYRPAFE 486 (641)
Q Consensus 473 ~~~~~~~~~~~~~~ 486 (641)
+.++.++...++++
T Consensus 361 ~~~~~s~~~~~~~~ 374 (414)
T TIGR03219 361 RVQRTSREAGELYE 374 (414)
T ss_pred HHHHHHHHHHHHhc
Confidence 78888887666554
No 49
>PRK06126 hypothetical protein; Provisional
Probab=99.95 E-value=2.8e-25 Score=248.94 Aligned_cols=332 Identities=17% Similarity=0.135 Sum_probs=185.9
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhh------hcCCCee
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWK------QEEAPIR 178 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~------~~~~~~~ 178 (641)
.+++||+||||||+||++|+.|++. |++|+||||.+..... ..+..+++++++ ++..|. ....+..
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~------G~~v~viEr~~~~~~~-~ra~~l~~r~~e-~L~~lGl~~~l~~~g~~~~ 76 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRR------GVDSILVERKDGTAFN-PKANTTSARSME-HFRRLGIADEVRSAGLPVD 76 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHC------CCcEEEEeCCCCCCCC-CccccCCHHHHH-HHHhcChHHHHHhhcCCcc
Confidence 4578999999999999999999999 9999999998754322 234567777763 333332 1121111
Q ss_pred eeccCccEEEee-cC---ccccCCCC--------------CCCCCcEEeeHHHHHHHHHHHHHHc-CCEEecCceEEEEE
Q 006539 179 VPVSSDKFWFLT-KD---RAFSLPSP--------------FSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEIL 239 (641)
Q Consensus 179 ~~~~~~~~~~~~-~~---~~~~~~~~--------------~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~ 239 (641)
. .....+... .. ..+.++.. ......+.+++..+.+.|.+.+++. |++|+++++|+++.
T Consensus 77 ~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~ 154 (545)
T PRK06126 77 Y--PTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFE 154 (545)
T ss_pred c--cCCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEE
Confidence 0 000001100 00 00001000 0011245688999999999998875 79999999999998
Q ss_pred EcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeec
Q 006539 240 YDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEID 319 (641)
Q Consensus 240 ~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 319 (641)
.++++ + .|++.+ .++|+ ..++++|+||+|||.+|.+|+++ ++.. .......+.+. .....+
T Consensus 155 ~~~~~-v-~v~~~~---~~~g~-------~~~i~ad~vVgADG~~S~VR~~l----gi~~-~g~~~~~~~~~--~~~~~~ 215 (545)
T PRK06126 155 QDADG-V-TATVED---LDGGE-------SLTIRADYLVGCDGARSAVRRSL----GISY-EGTSGLQRDLS--IYIRAP 215 (545)
T ss_pred ECCCe-E-EEEEEE---CCCCc-------EEEEEEEEEEecCCcchHHHHhc----CCcc-ccCCCcceEEE--EEEEcC
Confidence 88754 3 244432 01222 15799999999999999999865 4442 11111111121 112221
Q ss_pred CC-C-C-CCCcEEEEeccCCCCCCcceEEEEEeCCCe-EEEEEEEccCCCCCCCChHHHHHHHhcCCchhhhccCC---c
Q 006539 320 EG-K-H-NPGEILHTLGWPLDQKTYGGSFLYHMNDRQ-IALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGG---T 392 (641)
Q Consensus 320 ~~-~-~-~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~~l~~~---~ 392 (641)
.. . . ......+.+. .++.. +++++.+++. ..+. ....+.........+..+.+ ++.+... +
T Consensus 216 ~l~~~~~~~~~~~~~~~---~p~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 283 (545)
T PRK06126 216 GLAALVGHDPAWMYWLF---NPDRR--GVLVAIDGRDEWLFH-QLRGGEDEFTIDDVDARAFV------RRGVGEDIDYE 283 (545)
T ss_pred chHHHhcCCCceEEEEE---CCCcc--EEEEEECCCCeEEEE-EecCCCCCCCCCHHHHHHHH------HHhcCCCCCeE
Confidence 10 0 0 1111222221 12212 3455554332 2222 12111111111222111122 1111100 0
Q ss_pred eeeeccEEeecCCCccCCccccCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC---CchHHHHHHHHHhh
Q 006539 393 VVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKS 469 (641)
Q Consensus 393 ~~~~~~~~i~~~g~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~---~~~l~~Ye~~~~~~ 469 (641)
...... .. ......++|..+||+|+|||||.++|+.|||+|+||+||..||+.|...+.. ...|+.|++.|+..
T Consensus 284 i~~~~~--w~-~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~~~~~lL~~Y~~eR~p~ 360 (545)
T PRK06126 284 VLSVVP--WT-GRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGWAGPALLDSYEAERRPI 360 (545)
T ss_pred EEeecc--cc-hhheehhhhccCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCCCcHHHHhhhHHHhhHH
Confidence 111000 00 1112456788899999999999999999999999999999999999876543 47899999999864
Q ss_pred HHHHHHHHHhcc
Q 006539 470 WVWQELQRARNY 481 (641)
Q Consensus 470 ~~~~~~~~~~~~ 481 (641)
....+..++..
T Consensus 361 -~~~~~~~s~~~ 371 (545)
T PRK06126 361 -AARNTDYARRN 371 (545)
T ss_pred -HHHHHHHHHHH
Confidence 55555555443
No 50
>PRK07190 hypothetical protein; Provisional
Probab=99.95 E-value=3.6e-25 Score=242.69 Aligned_cols=325 Identities=16% Similarity=0.134 Sum_probs=186.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhh---hhh---cCCCeee
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQ---WKQ---EEAPIRV 179 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~---~~~---~~~~~~~ 179 (641)
..+||+||||||+||++|+.|++. |++|+||||.+.+... ..+..+.++++ +++.. |.. ...+...
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~------Gi~V~llEr~~~~~~~-gra~~l~~~tl-e~L~~lGl~~~l~~~~~~~~~ 75 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLC------GLNTVIVDKSDGPLEV-GRADALNARTL-QLLELVDLFDELYPLGKPCNT 75 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHc------CCCEEEEeCCCccccc-ccceEeCHHHH-HHHHhcChHHHHHhhCcccee
Confidence 358999999999999999999999 9999999999865432 22345777765 22222 211 1111111
Q ss_pred e-ccCccEEEee-cCccc-cCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCcccc
Q 006539 180 P-VSSDKFWFLT-KDRAF-SLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (641)
Q Consensus 180 ~-~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~ 256 (641)
. +.... .++. ..... ..+. ......+.+.+..+.+.|.+.+.+.|++|+++++|+++..++++. .|.+.+
T Consensus 76 ~~~~~~g-~~i~~~~~~~~~~~~-~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v--~v~~~~--- 148 (487)
T PRK07190 76 SSVWANG-KFISRQSSWWEELEG-CLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGC--LTTLSN--- 148 (487)
T ss_pred EEEecCC-ceEeeccccCccCCc-CCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCee--EEEECC---
Confidence 0 00000 0010 00000 0000 001123567889999999999999999999999999999887553 244443
Q ss_pred ccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccCC
Q 006539 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPL 336 (641)
Q Consensus 257 ~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 336 (641)
|.+++||+||+|||.+|.+|+++ ++.. ....+...+.-+.......... .+.. +.+. .
T Consensus 149 ------------g~~v~a~~vVgADG~~S~vR~~l----gi~f-~g~~~~~~~~~~d~~~~~~~~~-~~~~--~~~~--~ 206 (487)
T PRK07190 149 ------------GERIQSRYVIGADGSRSFVRNHF----NVPF-EIIRPQIIWAVIDGVIDTDFPK-VPEI--IVFQ--A 206 (487)
T ss_pred ------------CcEEEeCEEEECCCCCHHHHHHc----CCCc-cccccceeEEEEEEEEccCCCC-Ccce--EEEE--c
Confidence 56899999999999999999965 5542 1112222111111111111010 0111 1111 1
Q ss_pred CCCCcceEEEEEeCCCeEEEEEEEccCCCCCCCChHHHHHHHhc--CCchhhhccCCceeeeccEEeecCCCccCCccc-
Q 006539 337 DQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKH--HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPV- 413 (641)
Q Consensus 337 ~~~~~g~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~--~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~- 413 (641)
. .|..+++|..++...+-.. .+ .......+..+.+.. .|.. +. -..+.|.. .++.. .....++.
T Consensus 207 ~---~g~~~~~p~~~~~~r~~~~--~~--~~~~t~~~~~~~l~~~~~~~~---~~-~~~~~w~s-~~~~~-~r~a~~~r~ 273 (487)
T PRK07190 207 E---TSDVAWIPREGEIDRFYVR--MD--TKDFTLEQAIAKINHAMQPHR---LG-FKEIVWFS-QFSVK-ESVAEHFFI 273 (487)
T ss_pred C---CCCEEEEECCCCEEEEEEE--cC--CCCCCHHHHHHHHHHhcCCCC---Cc-eEEEEEEE-EeeeC-cEehhhcCc
Confidence 1 1335667776654432221 11 111222222222221 1110 11 01122211 11111 11234664
Q ss_pred cCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC---CchHHHHHHHHHhhHHHHHHHHHhcc
Q 006539 414 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNY 481 (641)
Q Consensus 414 ~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~---~~~l~~Ye~~~~~~~~~~~~~~~~~~ 481 (641)
.+||+|+|||||.++|..|||+|++|+||..|++.|+..+.. ...|+.|+.+|+.. ..+.+...+..
T Consensus 274 ~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~a~~~lLdtY~~eR~p~-a~~vl~~t~~~ 343 (487)
T PRK07190 274 QDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHGASPELLQSYEAERKPV-AQGVIETSGEL 343 (487)
T ss_pred CCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 699999999999999999999999999999999999876653 47899999999864 44555555543
No 51
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.94 E-value=1.2e-24 Score=234.51 Aligned_cols=336 Identities=18% Similarity=0.182 Sum_probs=190.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCC---c-cccccccChHHHHHh--hhhhhhcCCCeee
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA---H-IISGNVFEPRALNEL--LPQWKQEEAPIRV 179 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~---~-~~~g~~i~~~~l~~l--~~~~~~~~~~~~~ 179 (641)
+.+||+||||||||+++|+.|++.. ..|++|+|+||...... . ...+..+.+.++..+ +..|..... .
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~---~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~---~ 75 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLS---HGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALAD---C 75 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcc---cCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHh---h
Confidence 4689999999999999999998731 12999999999532211 0 112445666554322 122221100 0
Q ss_pred eccCccEEEeecC--ccccCC--CCCCCCCcEEeeHHHHHHHHHHHHHH-cCCEEecCceEEEEEEcCCCcEEEEEeCcc
Q 006539 180 PVSSDKFWFLTKD--RAFSLP--SPFSNRGNYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDM 254 (641)
Q Consensus 180 ~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~ 254 (641)
......+.+.... ....+. .......++.+.+..+.+.|.+.+.+ .|++++++++|+++..++++ + .|++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~-~-~v~~~~- 152 (395)
T PRK05732 76 ATPITHIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS-V-RVTLDD- 152 (395)
T ss_pred cCCccEEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe-E-EEEECC-
Confidence 0001111111110 000111 00011125778999999999998876 47999999999999876643 3 466655
Q ss_pred ccccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEecc
Q 006539 255 GIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGW 334 (641)
Q Consensus 255 g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~ 334 (641)
|.++.+|+||+|||.+|.+++.+ ++.. ...+. ....+.. .+.......+.....+.
T Consensus 153 --------------g~~~~a~~vI~AdG~~S~vr~~~----~~~~--~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~- 208 (395)
T PRK05732 153 --------------GETLTGRLLVAADGSHSALREAL----GIDW--QQHPY-EQVAVIA--NVTTSEAHQGRAFERFT- 208 (395)
T ss_pred --------------CCEEEeCEEEEecCCChhhHHhh----CCCc--cceec-CCEEEEE--EEEecCCCCCEEEEeec-
Confidence 56789999999999999988865 4432 11111 0111111 11111111222222221
Q ss_pred CCCCCCcceEEEEEeCCCeEEEEEEEccCCCC--CCCChHHHHHHHhcC-Cc-hhhhccCCceeeeccEEeecCCCccCC
Q 006539 335 PLDQKTYGGSFLYHMNDRQIALGLVVALNYHN--PFLNPYEEFQKFKHH-PA-IKPLLEGGTVVQYGARTLNEGGLQSIP 410 (641)
Q Consensus 335 ~~~~~~~g~~~~~~~~~~~~~ig~~~~~d~~~--~~~~~~~~~~~~~~~-p~-i~~~l~~~~~~~~~~~~i~~~g~~~~~ 410 (641)
. .|..+++|.+++...+.+....+... ...+..+..+.+... +. +..+........+ + ......+
T Consensus 209 ---~--~g~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-l~~~~~~ 277 (395)
T PRK05732 209 ---E--HGPLALLPMSDGRCSLVWCHPLEDAEEVLSWSDAQFLAELQQAFGWRLGRITHAGKRSAY-----P-LALVTAA 277 (395)
T ss_pred ---C--CCCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHHhhhcceeecCCccee-----c-ccccchh
Confidence 1 13357889888877665553221100 001111112222111 00 0011110000011 1 0111345
Q ss_pred ccccCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC------CchHHHHHHHHHhhHHHHHHHHHhcccch
Q 006539 411 YPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPA 484 (641)
Q Consensus 411 ~~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~------~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~ 484 (641)
+|..+|++|+|||||.++|+.|||+|+||+||..||+.|...+.. ..+|+.|++.|+.. ....+..++.+.++
T Consensus 278 ~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~-~~~~~~~~~~~~~~ 356 (395)
T PRK05732 278 QQISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQD-REATIGFTDGLVRL 356 (395)
T ss_pred hhccCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 778899999999999999999999999999999999999765421 25799999988864 56666777777666
Q ss_pred hh
Q 006539 485 FE 486 (641)
Q Consensus 485 ~~ 486 (641)
+.
T Consensus 357 ~~ 358 (395)
T PRK05732 357 FA 358 (395)
T ss_pred Hc
Confidence 64
No 52
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.93 E-value=2.4e-23 Score=230.93 Aligned_cols=333 Identities=14% Similarity=0.045 Sum_probs=183.9
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCC-CCCcc--ccccccChHHHHHhhhhhh--------h
Q 006539 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE-VGAHI--ISGNVFEPRALNELLPQWK--------Q 172 (641)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~-~g~~~--~~g~~i~~~~l~~l~~~~~--------~ 172 (641)
..+..+|+||||||+||++|+.|++. |++|+|+||.+. ..+.. ..+-.|.++++.-| ..+. .
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~------Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aL-e~LGl~~~e~l~~ 150 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKK------GFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAAL-EAIDIDVAEQVME 150 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhc------CCeEEEEeccccccccccccCcccccCHHHHHHH-HHcCcchHHHHHh
Confidence 34678999999999999999999999 999999999762 11111 11234667665332 2221 1
Q ss_pred cCCCeeeeccCccE-EEeec-Cc--cccCCC--CCC---CCCcEEeeHHHHHHHHHHHHHHcCC-EEecCceEEEEEEcC
Q 006539 173 EEAPIRVPVSSDKF-WFLTK-DR--AFSLPS--PFS---NRGNYVISLSQLVRWLGGKAEELGV-EIYPGFAASEILYDA 242 (641)
Q Consensus 173 ~~~~~~~~~~~~~~-~~~~~-~~--~~~~~~--~~~---~~~~~~v~~~~l~~~L~~~a~~~Gv-~i~~g~~v~~i~~~~ 242 (641)
..... ...+ .+.+. .. ...++. +.. ....+.++|..|.+.|.+. .+. .++++++|++++.++
T Consensus 151 ~g~~~-----~~~i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~a---lg~~~i~~g~~V~~I~~~~ 222 (668)
T PLN02927 151 AGCIT-----GDRINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARA---VGEDVIRNESNVVDFEDSG 222 (668)
T ss_pred hcCcc-----cceeeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhh---CCCCEEEcCCEEEEEEEeC
Confidence 11100 0011 01110 00 011110 101 1124689999999999754 343 367899999998776
Q ss_pred CCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCcccee-eEEEEEEeecCC
Q 006539 243 DNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYA-LGIKEVWEIDEG 321 (641)
Q Consensus 243 ~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~ 321 (641)
+ .+ .|++.+ |.++++|+||+|||.+|.+|+.+. +... +...+ ..+..+....+.
T Consensus 223 d-~V-tV~~~d---------------G~ti~aDlVVGADG~~S~vR~~l~---g~~~-----~~~sG~~~~rgi~~~~p~ 277 (668)
T PLN02927 223 D-KV-TVVLEN---------------GQRYEGDLLVGADGIWSKVRNNLF---GRSE-----ATYSGYTCYTGIADFIPA 277 (668)
T ss_pred C-EE-EEEECC---------------CCEEEcCEEEECCCCCcHHHHHhc---CCCC-----CcccceEEEEEEcCCCcc
Confidence 4 44 466665 678899999999999999999873 3221 11111 122222222111
Q ss_pred CCCCCcEEEEeccCCCCCCcceEEEEEeCCCeEEEEEEEccCCC--CCC-CChHHHHHHHhc-CCchhhhccCCceeeec
Q 006539 322 KHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYH--NPF-LNPYEEFQKFKH-HPAIKPLLEGGTVVQYG 397 (641)
Q Consensus 322 ~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~~~~d~~--~~~-~~~~~~~~~~~~-~p~i~~~l~~~~~~~~~ 397 (641)
.. .......+ ..... ....++..++.+.+-........ ... ....+..+.+.. .+.+.++++....-...
T Consensus 278 ~~-~~~~~~~~---~G~~~--~~v~~~v~~g~~~~~~f~~~p~~~~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~ 351 (668)
T PLN02927 278 DI-ESVGYRVF---LGHKQ--YFVSSDVGGGKMQWYAFHEEPAGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAIL 351 (668)
T ss_pred cc-cccceEEE---EcCCe--EEEEEcCCCCeEEEEEEEECCccccccchhHHHHHHHHhccCCHHHHHHHHhCccccce
Confidence 10 01101111 11111 11223444444433222211110 100 011112223322 34555555422110000
Q ss_pred cEEeecCCCccCCccccCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC----------CchHHHHHHHHH
Q 006539 398 ARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----------DSNMEIYWDTLQ 467 (641)
Q Consensus 398 ~~~i~~~g~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~----------~~~l~~Ye~~~~ 467 (641)
...+ ....+.++|+.+|++|+|||||.++|..|||+++||+||..||+.|..+... ..+|+.|++.|+
T Consensus 352 ~~~i--yd~~p~~~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~ 429 (668)
T PLN02927 352 RRDI--YDRSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRR 429 (668)
T ss_pred eeeE--EeccCCCccccCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHH
Confidence 0111 1122445788899999999999999999999999999999999999875321 368999999998
Q ss_pred hhHHHHHHHHHhcccchh
Q 006539 468 KSWVWQELQRARNYRPAF 485 (641)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~ 485 (641)
.+ +.+.+..++....++
T Consensus 430 ~r-v~~i~~~ar~a~~~~ 446 (668)
T PLN02927 430 LR-VAIIHAMARMAAIMA 446 (668)
T ss_pred HH-HHHHHHHHHHHHHHH
Confidence 75 666666655544444
No 53
>PRK11445 putative oxidoreductase; Provisional
Probab=99.92 E-value=9.6e-23 Score=215.59 Aligned_cols=305 Identities=20% Similarity=0.233 Sum_probs=172.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCC---CccccccccChHHHHHhhhhhhhcCCCeeeeccCc
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVG---AHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g---~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (641)
|||+||||||||+++|+.|++ .++|+|+||.+..+ ....+|+.++++++..+ ..+.... +........
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~-------~~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L-~~lgl~~-~~~~~~~~~ 72 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAG-------KMKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSF-AKDGLTL-PKDVIANPQ 72 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhc-------cCCEEEEECCCccccccccCcCcCccCHHHHHHH-HHcCCCC-Ccceeeccc
Confidence 799999999999999999987 37999999987643 22346888998876443 2222110 000000000
Q ss_pred cEEEeecCccccCCCCC---CCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCC
Q 006539 185 KFWFLTKDRAFSLPSPF---SNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (641)
Q Consensus 185 ~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~ 261 (641)
.... ..+.+.... .....+.++|..|.++|.+. .+.|+++++++.+++++.++++ + .|++.+ +|+
T Consensus 73 ~~~~----~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~-~-~v~~~~-----~g~ 140 (351)
T PRK11445 73 IFAV----KTIDLANSLTRNYQRSYINIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWREDDG-Y-HVIFRA-----DGW 140 (351)
T ss_pred ccee----eEecccccchhhcCCCcccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcCCE-E-EEEEec-----CCc
Confidence 0000 001111100 11123469999999999885 4678999999999999887654 2 355422 121
Q ss_pred cccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccCCCCCCc
Q 006539 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTY 341 (641)
Q Consensus 262 ~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 341 (641)
..+++||+||+|||.+|.+|+++. ... ......++...+... . ..+.. ...+..... .
T Consensus 141 -------~~~i~a~~vV~AdG~~S~vr~~l~----~~~-----~~~~~~~~~~~~~~~-~-~~~~~-~~~f~~~~~---~ 198 (351)
T PRK11445 141 -------EQHITARYLVGADGANSMVRRHLY----PDH-----QIRKYVAIQQWFAEK-H-PVPFY-SCIFDNEIT---D 198 (351)
T ss_pred -------EEEEEeCEEEECCCCCcHHhHHhc----CCC-----chhhEEEEEEEecCC-C-CCCCc-ceEEeccCC---C
Confidence 137899999999999999999762 211 111123333322211 1 11111 011111111 2
Q ss_pred ceEEEEEeCCCeEEEEEEEccCCCCCCCChHHHHHHHhcCCchhh-hccCCceeeeccEEeecCCCccCCc--cccCCEE
Q 006539 342 GGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKP-LLEGGTVVQYGARTLNEGGLQSIPY--PVFPGGA 418 (641)
Q Consensus 342 g~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~-~l~~~~~~~~~~~~i~~~g~~~~~~--~~~~~v~ 418 (641)
+..|.+|.++ ...+|..... ....+.++.+.. .+.. ....++.+......+... ..++. +..+|++
T Consensus 199 ~~~W~~p~~~-~~~~g~~~~~------~~~~~~~~~l~~--~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~vv 267 (351)
T PRK11445 199 CYSWSISKDG-YFIFGGAYPM------KDGRERFETLKE--KLSAFGFQFGKPVKTEACTVLRP--SRWQDFVCGKDNAF 267 (351)
T ss_pred ceEEEeCCCC-cEEecccccc------cchHHHHHHHHH--HHHhcccccccccccccccccCc--ccccccccCCCCEE
Confidence 4478888865 4444422211 111122221111 0000 000111111100001110 01122 2347999
Q ss_pred EEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccCCchHHHHHHHHHh
Q 006539 419 IIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQK 468 (641)
Q Consensus 419 LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~~~~l~~Ye~~~~~ 468 (641)
|||||||.++|++|+|++.||+||..||+.|.+.. ...++.|++.++.
T Consensus 268 lVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~--~~~~~~y~~~~~~ 315 (351)
T PRK11445 268 LIGEAAGFISPSSLEGISYALDSARILSEVLNKQP--EKLNTAYWRKTRK 315 (351)
T ss_pred EEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 99999999999999999999999999999998765 4578999998886
No 54
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.92 E-value=2e-24 Score=219.22 Aligned_cols=304 Identities=17% Similarity=0.157 Sum_probs=144.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccC--h---HHHHHhh--hhhhhcCCCeee
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFE--P---RALNELL--PQWKQEEAPIRV 179 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~--~---~~l~~l~--~~~~~~~~~~~~ 179 (641)
+-+|||||||++||++|+.|+|+ |++|+|+|++..+.+. |..|+ . ++|+.+. +.......|+..
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~------G~~v~VlE~~e~~R~~---g~si~L~~ng~~aLkai~~~e~i~~~gip~~~ 72 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRK------GIDVVVLESREDPRGE---GTSINLALNGWRALKAIGLKEQIREQGIPLGG 72 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHc------CCeEEEEeeccccccC---CcceeehhhHHHHHHHcccHHHHHHhcCcccc
Confidence 35799999999999999999999 9999999998776553 33332 1 2232221 112222233221
Q ss_pred eccCccEEEeecCccccCCCCCCCCCcEE--eeHHHHHHHHHHHHHHcCCEEecCc------eEEEEEEcCCCcEEEEEe
Q 006539 180 PVSSDKFWFLTKDRAFSLPSPFSNRGNYV--ISLSQLVRWLGGKAEELGVEIYPGF------AASEILYDADNKVIGIGT 251 (641)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~l~~~L~~~a~~~Gv~i~~g~------~v~~i~~~~~g~v~~V~~ 251 (641)
.+. ....+......++ ....+.|+ +.+..+.+.+...++.. -+|.++. ....++..... ..|++
T Consensus 73 ~v~---~~~~sg~~~~~~~--~~~~~~~i~r~~~r~ll~~lL~~a~~~-~~ikf~~~~~~~~~~~~~~~~~~~--~~v~l 144 (420)
T KOG2614|consen 73 RVL---IHGDSGKEVSRIL--YGEPDEYILRINRRNLLQELLAEALPT-GTIKFHSNLSCTSKDVEIETLGKK--LVVHL 144 (420)
T ss_pred eee---eecCCCCeeEecc--cCCchHHHHHHHHHHHHHHHHHhhcCC-Ceeecccccccccccceeeecccc--cceec
Confidence 110 0000011111111 11222332 33444444444444443 3444453 22222222111 12455
Q ss_pred CccccccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcE---
Q 006539 252 NDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEI--- 328 (641)
Q Consensus 252 ~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~--- 328 (641)
.+ |.++++|++|+|||++|.||+.|..+. .. ......++.+--++........+
T Consensus 145 ~~---------------g~~~~~dlligCDGa~S~Vr~~l~~~~-p~-------~~~~~ayrg~~~~~~~~~~~~~vf~~ 201 (420)
T KOG2614|consen 145 SD---------------GTTVKGDLLIGCDGAYSKVRKWLGFKE-PR-------YDGSQAYRGLGFIPNGIPFGKKVFAI 201 (420)
T ss_pred CC---------------CcEEEeeEEEEcCchHHHHHHHhcccC-Cc-------ceeEEEEeeeeeccCCCCcccceecc
Confidence 44 789999999999999999999884321 11 11222333322222222111111
Q ss_pred --EEEeccCCCCCCcceEEEEEeCCCeEEEEEEEccCCCCCC-CChHHHHHHHhc-CCchhhhccCCceeeeccEEeecC
Q 006539 329 --LHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYHNPF-LNPYEEFQKFKH-HPAIKPLLEGGTVVQYGARTLNEG 404 (641)
Q Consensus 329 --~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~~~~d~~~~~-~~~~~~~~~~~~-~p~i~~~l~~~~~~~~~~~~i~~~ 404 (641)
-+...|+..... ..+|..-+...........+..+.. ....+..+.|.. .|.+-+++......... .....
T Consensus 202 ~~~~~~~~~~~~~~---~~~y~~~~k~~t~t~~~~~~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~--l~~r~ 276 (420)
T KOG2614|consen 202 YGNGLHSWPRPGFH---LIAYWFLDKSLTSTDFAPFDEPEKLKKTSLEVVDFFPENFPDIIELTGEESIVRTP--LADRP 276 (420)
T ss_pred cCCeEEEcccCCce---EEEEEeecCCcccccccCcCCHHHHhhhHHHHHHHhHHhHHHHHHhcChHHhhhch--hhhcC
Confidence 111112222110 1122222222222211111100000 112222233321 12222222211111100 00000
Q ss_pred CC-ccCCccccCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC
Q 006539 405 GL-QSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 455 (641)
Q Consensus 405 g~-~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~ 455 (641)
.+ ....+-...+++|+|||||+|.|+.|||+|+||||+.+||++|.++..+
T Consensus 277 p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d 328 (420)
T KOG2614|consen 277 PWPLISVKCSPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAIND 328 (420)
T ss_pred CcCeeeeccCCCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhccc
Confidence 00 0112334458999999999999999999999999999999999998864
No 55
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=99.91 E-value=1.7e-25 Score=178.65 Aligned_cols=79 Identities=29% Similarity=0.648 Sum_probs=71.2
Q ss_pred cccCCCCCcEEecCCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCC-CCeeEECCC
Q 006539 553 NHEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPK-QNIKWTVPE 631 (641)
Q Consensus 553 ~~~~~~~~hl~~~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~-~~i~w~~p~ 631 (641)
.+.+.+.+||.++|+..|.+|+ +++|+.+|||+||++.++ | ++.|+|++|+|||||++.||. +.|+|+||+
T Consensus 18 ~~vDe~~pHI~v~~~~~~~~~~----~~~l~~aCPA~~Y~~~~~--g--~l~~~yegClECGTCRvlc~~~~~i~W~YPr 89 (99)
T COG2440 18 YNVDEDHPHIIVKDPDDCQECE----DKPLIKACPAGCYKLIDD--G--KLRFDYEGCLECGTCRVLCPHSGLIQWRYPR 89 (99)
T ss_pred eeccCCCCcEecCCchhhhhcc----chhhhhcCCHHHeeECCC--C--cEEEeecCeeeccceeEecCCCcceEEecCC
Confidence 3444555999999999999998 889999999999999763 2 799999999999999999999 999999999
Q ss_pred CCCCCCcC
Q 006539 632 GGGGPGYS 639 (641)
Q Consensus 632 gg~g~~~~ 639 (641)
||+||.||
T Consensus 90 gg~GI~yr 97 (99)
T COG2440 90 GGFGITYR 97 (99)
T ss_pred CCcCEEEe
Confidence 99999997
No 56
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.91 E-value=3e-21 Score=207.48 Aligned_cols=305 Identities=17% Similarity=0.143 Sum_probs=174.8
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHh-hhhhhhcCCCeeeeccCccEE
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL-LPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l-~~~~~~~~~~~~~~~~~~~~~ 187 (641)
||+||||||||+++|+.|++. |++|+|||+.+..++... ..+....+.++ +..... .... ....
T Consensus 1 DviIiGaG~AGl~~A~~la~~------g~~v~liE~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~-~~~~ 65 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP------GLRVQLIEPHPPIPGNHT--YGVWDDDLSDLGLADCVE------HVWP-DVYE 65 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC------CCeEEEEccCCCCCCCcc--ccccHhhhhhhchhhHHh------hcCC-CceE
Confidence 899999999999999999998 999999999877654321 11222222111 000000 0000 0011
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
+......... ......+++..|.+.|.+++.+.|++++ ...|+++..++++ .+.|++.+
T Consensus 66 ~~~~~~~~~~-----~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~-~~~v~~~~-------------- 124 (388)
T TIGR01790 66 YRFPKQPRKL-----GTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVA-LSTVYCAG-------------- 124 (388)
T ss_pred EecCCcchhc-----CCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCc-eeEEEeCC--------------
Confidence 1111111111 1223468999999999999999999987 4578888766333 34576655
Q ss_pred cceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccCCCCC------Cc
Q 006539 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQK------TY 341 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~ 341 (641)
|.+++||+||+|+|.+|.+++.. .+.. .......|+. .+++.....++.. ..+.+..... ..
T Consensus 125 -g~~~~a~~VI~A~G~~s~~~~~~---~~~~-----~~~q~~~G~~--~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~ 192 (388)
T TIGR01790 125 -GQRIQARLVIDARGFGPLVQYVR---FPLN-----VGFQVAYGVE--ARLSRPPHGPSSM-VIMDARVDQLAAPELKGY 192 (388)
T ss_pred -CCEEEeCEEEECCCCchhccccc---CCCC-----ceEEEEEEEE--EEEcCCCCCCCce-EEEeccccccccccccCC
Confidence 56899999999999998553311 1111 1122334442 2333222222221 2222211110 12
Q ss_pred c--eEEEEEeCCCeEEEEEEEccCCCCCCCChHHHHHH-HhcCCchhh-hccCCceeeeccEEeecCCCccCCccccCCE
Q 006539 342 G--GSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQK-FKHHPAIKP-LLEGGTVVQYGARTLNEGGLQSIPYPVFPGG 417 (641)
Q Consensus 342 g--~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~-~~~~p~i~~-~l~~~~~~~~~~~~i~~~g~~~~~~~~~~~v 417 (641)
+ ..|++|.+++.+.++...... .+... .+.+.+ +.. .++. -+...+.++.....+|..+.. .+..+|+
T Consensus 193 ~~~f~~~lP~~~~~~~v~~~~~~~--~~~~~-~~~~~~~l~~--~~~~~g~~~~~i~~~~~~~iP~~~~~---~~~~~rv 264 (388)
T TIGR01790 193 RPTFLYAMPLGSTRVFIEETSLAD--RPALP-RDRLRQRILA--RLNAQGWQIKTIEEEEWGALPVGLPG---PFLPQRV 264 (388)
T ss_pred CCceEEEeecCCCeEEEEeccccC--CCCCC-HHHHHHHHHH--HHHHcCCeeeEEEeeeeEEEecccCC---CccCCCe
Confidence 2 478899998888776432111 11122 222221 111 0100 011112222223345554432 2367899
Q ss_pred EEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC--CchHHHHHHHHHhh
Q 006539 418 AIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE--DSNMEIYWDTLQKS 469 (641)
Q Consensus 418 ~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~--~~~l~~Ye~~~~~~ 469 (641)
++||||||.++|.+|+|++.|+++|..+|+.|.+++.. ...++.|++.++..
T Consensus 265 ~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 318 (388)
T TIGR01790 265 AAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQSSELATAAWDGLWPTE 318 (388)
T ss_pred eeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhchHH
Confidence 99999999999999999999999999999999887753 35677887666543
No 57
>PLN02697 lycopene epsilon cyclase
Probab=99.90 E-value=8.3e-21 Score=207.69 Aligned_cols=314 Identities=16% Similarity=0.153 Sum_probs=184.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHh-hhhhhhcCCCeeeeccCc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL-LPQWKQEEAPIRVPVSSD 184 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l-~~~~~~~~~~~~~~~~~~ 184 (641)
..+||+|||||||||++|+.|++. |++|+|||+......+ ..+....+.++ +... +......
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~------Gl~V~LIe~~~p~~~n----~GvW~~~l~~lgl~~~------i~~~w~~- 169 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKL------GLNVGLIGPDLPFTNN----YGVWEDEFKDLGLEDC------IEHVWRD- 169 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhC------CCcEEEecCcccCCCc----cccchhHHHhcCcHHH------HHhhcCC-
Confidence 469999999999999999999998 9999999986443321 12222222221 0000 0000111
Q ss_pred cEEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccc
Q 006539 185 KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKE 264 (641)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~ 264 (641)
...+......... ......++|..|.+.|.+++.+.|+++ .+..|+++..++++ +..|.+.+
T Consensus 170 ~~v~~~~~~~~~~-----~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~d----------- 231 (529)
T PLN02697 170 TIVYLDDDKPIMI-----GRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACED----------- 231 (529)
T ss_pred cEEEecCCceeec-----cCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcC-----------
Confidence 1111111111111 111225899999999999999999998 57789998876644 32344444
Q ss_pred ccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccC---------
Q 006539 265 NFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP--------- 335 (641)
Q Consensus 265 ~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~--------- 335 (641)
|.+++|++||+|||.+|. +.+ +........+.+...|+.. ++......++. ...+.|.
T Consensus 232 ----G~~i~A~lVI~AdG~~S~--rl~----~~~~~~~~~~~Q~a~Gi~v--e~~~~~~d~~~-~vlMD~r~~~~~~~~~ 298 (529)
T PLN02697 232 ----GRVIPCRLATVASGAASG--RLL----QYEVGGPRVCVQTAYGVEV--EVENNPYDPSL-MVFMDYRDYFKEKVSH 298 (529)
T ss_pred ----CcEEECCEEEECCCcChh--hhh----ccccCCCCcccEEEEEEEE--EecCCCCCcch-heeecccccccccccc
Confidence 578999999999999983 211 1110001122344445432 33322233332 1222221
Q ss_pred CCCCCcceEEEEEeCCCeEEE-EEEEccCCCCCCCChH---HHHHHHhcCCchhhhccCCceeeeccEEeecCCCccCCc
Q 006539 336 LDQKTYGGSFLYHMNDRQIAL-GLVVALNYHNPFLNPY---EEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPY 411 (641)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~i-g~~~~~d~~~~~~~~~---~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~ 411 (641)
...+.++..|++|.+++++.| +..... .+.+... +.+..+..+.. +...+.++.....||.++ ++|.
T Consensus 299 ~~~~~p~FlYvlP~~~~~~~VE~T~l~~---~~~l~~~~l~~~L~~~l~~~G----i~~~~i~~~E~g~iPm~g--~~~~ 369 (529)
T PLN02697 299 LEAEYPTFLYAMPMSSTRVFFEETCLAS---KDAMPFDLLKKRLMSRLETMG----IRILKTYEEEWSYIPVGG--SLPN 369 (529)
T ss_pred ccCCCceEEEEeecCCCeEEEEEeeecc---CCCCCHHHHHHHHHHHHHhCC----CCcceEEEEEeeeecCCC--CCcc
Confidence 111234457888999999988 443211 1112211 12222211111 122344444455677766 3444
Q ss_pred cccCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccCC-------------chHHHHHHHHHhhHHHHHHHHH
Q 006539 412 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHED-------------SNMEIYWDTLQKSWVWQELQRA 478 (641)
Q Consensus 412 ~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~~-------------~~l~~Ye~~~~~~~~~~~~~~~ 478 (641)
. .++++++||||++++|.+|-|+..++.+|..+|++|+++++.+ ..++.|++.|.+. ..++....
T Consensus 370 ~-~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e-~~r~~~~~ 447 (529)
T PLN02697 370 T-EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQE-RKRQRAFF 447 (529)
T ss_pred c-CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHH-HHHHHHHH
Confidence 4 6789999999999999999999999999999999999988643 3467888777654 33333333
No 58
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.88 E-value=1.1e-21 Score=226.43 Aligned_cols=324 Identities=18% Similarity=0.146 Sum_probs=176.9
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhc-CCCeee-eccCccE
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQE-EAPIRV-PVSSDKF 186 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~-~~~~~~-~~~~~~~ 186 (641)
+|+|||||||||++|+.|++. ++|++|+|+||.+... ....|..+.+..+..+ ..+... ...+.. ......+
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~----~~G~~V~vlEr~~~~~-~~G~Gi~ls~~~l~~L-~~~~~~~~~~~~~~~~~~~~~ 75 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLL----DPAHEVTVVERNRPYD-TFGWGVVFSDATLGNL-RAADPVSAAAIGDAFNHWDDI 75 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHh----CCCCeEEEEecCCCCc-ccCcceEccHHHHHHH-HhcCHHHHHHHHHhcccCCce
Confidence 699999999999999999986 3479999999987642 2223445666665433 222110 000000 0001111
Q ss_pred EEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccccc
Q 006539 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (641)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~ 266 (641)
.+........ ....+...++|..|.+.|.+++.+.||+|+++++++++..
T Consensus 76 ~~~~~g~~~~----~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~-------------------------- 125 (765)
T PRK08255 76 DVHFKGRRIR----SGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA-------------------------- 125 (765)
T ss_pred EEEECCEEEE----ECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh--------------------------
Confidence 1111111100 0111123488999999999999999999999998754320
Q ss_pred ccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccCCCCCCcceEEE
Q 006539 267 QRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFL 346 (641)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 346 (641)
..+++|+||+|||.+|.+|+++...++... .+....+ .|- ........... ...+...+.+ ..+.
T Consensus 126 ---~~~~~D~VVgADG~~S~vR~~~~~~~~~~~----~~~~~~~----~w~-g~~~~~~~~~~--~~~~~~~g~~-~~~~ 190 (765)
T PRK08255 126 ---LAADADLVIASDGLNSRIRTRYADTFQPDI----DTRRCRF----VWL-GTHKVFDAFTF--AFEETEHGWF-QAHA 190 (765)
T ss_pred ---hhcCCCEEEEcCCCCHHHHHHHHhhcCCce----ecCCCce----EEe-cCCCcccceeE--EEEecCCceE-EEEE
Confidence 124699999999999999998765554331 1111110 111 10000110000 0000111111 1223
Q ss_pred EEeCCCeEEEEEEEccC-CC---CCCCChHHHHHHH----hcCCchhhhccCCceeeeccEEeecCCCccCCccccCC--
Q 006539 347 YHMNDRQIALGLVVALN-YH---NPFLNPYEEFQKF----KHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPG-- 416 (641)
Q Consensus 347 ~~~~~~~~~ig~~~~~d-~~---~~~~~~~~~~~~~----~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~~~-- 416 (641)
|+..++...+-+....+ +. .+..+..+..+.+ .......+++............+ ......++|+.+|
T Consensus 191 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~li~~~~~~~~~~w~~--~~~~~~~~w~~gr~~ 268 (765)
T PRK08255 191 YRFDDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFADYLDGHPLMSNASHLRGSAWIN--FPRVVCERWVHWNRR 268 (765)
T ss_pred eeeCCCCcEEEEEcCHHHHHhcCCccCCHHHHHHHHHHHhHHhcCCCcccccccccccceeee--cceeccCCCccCCCc
Confidence 55555444332222111 00 0111221111111 11100111222111000000000 0011346888888
Q ss_pred --EEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccc-cCCchHHHHHHHHHhhHHHHHHHHHhcccchhh
Q 006539 417 --GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVL-HEDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (641)
Q Consensus 417 --v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~-~~~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~~ 486 (641)
++|+|||||.++|..|||+++||+||..||+.|.... ....+|+.|++.|+.+ ..+.++.++...+++.
T Consensus 269 ~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~al~~ye~~R~~r-~~~~~~~s~~~~~~~~ 340 (765)
T PRK08255 269 VPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEHPGDLPAALAAYEEERRVE-VLRIQNAARNSTEWFE 340 (765)
T ss_pred ccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH-HHHHHHHHHHhCceee
Confidence 9999999999999999999999999999999998653 2257899999999875 7777777876666663
No 59
>PLN02463 lycopene beta cyclase
Probab=99.86 E-value=2.1e-19 Score=193.92 Aligned_cols=294 Identities=17% Similarity=0.204 Sum_probs=169.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCcc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (641)
..|||+||||||||+++|+.|++. |++|+|+|+.+..... +...+....++++ ..... +........
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~------Gl~V~liE~~~~~~~p--~~~g~w~~~l~~l-gl~~~----l~~~w~~~~ 93 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEA------GLSVCCIDPSPLSIWP--NNYGVWVDEFEAL-GLLDC----LDTTWPGAV 93 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHC------CCeEEEeccCccchhc--cccchHHHHHHHC-CcHHH----HHhhCCCcE
Confidence 358999999999999999999998 9999999997643221 1111111111111 00000 000011111
Q ss_pred EEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccc
Q 006539 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (641)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~ 265 (641)
+ +......... ......++|..|.+.|.+++.+.||+++ ..+|++++.++++ +.|++.+
T Consensus 94 v-~~~~~~~~~~-----~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~d------------ 152 (447)
T PLN02463 94 V-YIDDGKKKDL-----DRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDD------------ 152 (447)
T ss_pred E-EEeCCCCccc-----cCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECC------------
Confidence 1 1111111111 1223458999999999999999999987 4689999877643 3677766
Q ss_pred cccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccC----------
Q 006539 266 FQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP---------- 335 (641)
Q Consensus 266 ~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~---------- 335 (641)
|.+++||+||+|||.+|.+.+ .... .....+...|+. .++.......+. ...+.|.
T Consensus 153 ---G~~i~A~lVI~AdG~~s~l~~-----~~~~---~~~g~Q~a~Gi~--~ev~~~p~d~~~-~vlMD~r~~~~~~~~~~ 218 (447)
T PLN02463 153 ---GVKIQASLVLDATGFSRCLVQ-----YDKP---FNPGYQVAYGIL--AEVDSHPFDLDK-MLFMDWRDSHLGNNPEL 218 (447)
T ss_pred ---CCEEEcCEEEECcCCCcCccC-----CCCC---CCccceeeeeEE--eecCCCCccccc-chhhhcChhhccccchh
Confidence 678999999999999987643 1111 111122233332 222221122221 1111111
Q ss_pred --CCCCCcceEEEEEeCCCeEEEEEEEccCCCCCCCChHHHHH-HHhcCCchhh-hccCCceeeeccEEeecCCCccCCc
Q 006539 336 --LDQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQ-KFKHHPAIKP-LLEGGTVVQYGARTLNEGGLQSIPY 411 (641)
Q Consensus 336 --~~~~~~g~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~-~~~~~p~i~~-~l~~~~~~~~~~~~i~~~g~~~~~~ 411 (641)
......+..|++|.+++++.++...-. ..+.+. .+.++ ++... ++. -++..+..+.....||.++.. |
T Consensus 219 ~~~~~~~p~FlY~~P~~~~~~~vEeT~l~--s~~~~~-~~~lk~~L~~~--l~~~Gi~~~~i~~~E~~~IPmg~~~--~- 290 (447)
T PLN02463 219 RARNSKLPTFLYAMPFSSNRIFLEETSLV--ARPGLP-MDDIQERMVAR--LRHLGIKVKSVEEDEKCVIPMGGPL--P- 290 (447)
T ss_pred hhccCCCCceEEEEecCCCeEEEEeeeee--cCCCCC-HHHHHHHHHHH--HHHCCCCcceeeeeeeeEeeCCCCC--C-
Confidence 011112347889999988877655211 112122 22222 22111 110 011223333344467777643 3
Q ss_pred cccCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhccccC
Q 006539 412 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 455 (641)
Q Consensus 412 ~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~ 455 (641)
...++++++||||++++|.+|.|+..++..|..+|++|.++++.
T Consensus 291 ~~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~ 334 (447)
T PLN02463 291 VIPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGS 334 (447)
T ss_pred CCCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhc
Confidence 23569999999999999999999999999999999999998864
No 60
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.85 E-value=9.3e-20 Score=197.87 Aligned_cols=222 Identities=18% Similarity=0.223 Sum_probs=135.7
Q ss_pred CcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCC
Q 006539 205 GNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (641)
Q Consensus 205 ~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~ 284 (641)
.+|.++|..+.+.|.+.|++.||+++.++ |+++..+++|.|..|++.+ |.+++||++|+|+|.+
T Consensus 147 ~ayhlDR~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~---------------g~~i~ad~~IDASG~~ 210 (454)
T PF04820_consen 147 YAYHLDRAKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDD---------------GRTIEADFFIDASGRR 210 (454)
T ss_dssp -EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETT---------------SEEEEESEEEE-SGGG
T ss_pred eeEEEeHHHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECC---------------CCEEEEeEEEECCCcc
Confidence 37899999999999999999999999885 8888888888888999887 7899999999999998
Q ss_pred CchhHHHHHHcCCCcccccCccc-eeeEEEEEEeecCCC-CCCCcEEEEeccCCCCCCcceEEEEEeCCCeEEEEEEEcc
Q 006539 285 GSLSEKLIKNFKLREKSHAQHQT-YALGIKEVWEIDEGK-HNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVAL 362 (641)
Q Consensus 285 s~vr~~l~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~~~~ 362 (641)
+.+.++. ++... ....... ...++ ...++... ..+-+..+.+ ..|..|.+|+.++..+ |++...
T Consensus 211 s~L~~~~---L~~~~-~~~~~~L~~d~av--~~~~~~~~~~~~~T~~~a~-------~~GW~W~IPL~~~~~~-G~V~s~ 276 (454)
T PF04820_consen 211 SLLARKA---LKVGF-RDWSDWLPNDRAV--AVQVPNEDPPEPYTRSTAF-------EAGWIWYIPLQNRRGS-GYVYSS 276 (454)
T ss_dssp -CCCCCC---T-EEE-EEETTTCEEEEEE--EEEEE-SSCTTSSEEEEEE-------SSEEEEEEEESSEEEE-EEEEET
T ss_pred chhhHhh---hcCCC-ccccccccccEEE--EEecCcCCCCCCceeEEec-------CCceEEEccCCCcceE-EEEecc
Confidence 8876642 11110 0001111 01111 11222222 2222233322 2355789999986666 888754
Q ss_pred CCCCCCCChHHHHHHHhcCCchhhhccCCceeeeccEEeecCCCccCCccccCCEEEEecCCCCCCCCCccchHHHHHHH
Q 006539 363 NYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSG 442 (641)
Q Consensus 363 d~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da 442 (641)
++ .++.+.++.+..+-....... ...+... .+ ...+...+|+++|||||++++|+.+.|+++|+..+
T Consensus 277 ~~----~s~~~A~~~l~~~l~~~~~~~-~~~i~~~-----~g---~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa 343 (454)
T PF04820_consen 277 DF----ISDDEAEAELLAYLGGSPEAE-PRHIRFR-----SG---RRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAA 343 (454)
T ss_dssp TT----SHHHHHHHHHHHHHTCHCTTS-CEEEE-S------E---EESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHH
T ss_pred cc----CCHHHHHHHHHHhcchhhhcc-hhhhccc-----cc---chhhcccCCEEEEcchhhccCccccccHHHHHHHH
Confidence 33 233343444432111100011 1222211 11 13466678999999999999999999999999988
Q ss_pred HHHHHHHhccccCCchHHHHHHHHHhh
Q 006539 443 MLAAEAGFGVLHEDSNMEIYWDTLQKS 469 (641)
Q Consensus 443 ~~lA~~l~~~~~~~~~l~~Ye~~~~~~ 469 (641)
..+++.|........+++.|++.++..
T Consensus 344 ~~l~~~l~~~~~~~~~~~~Yn~~~~~~ 370 (454)
T PF04820_consen 344 EALAEALPDDDFSPAALDRYNRRMRRE 370 (454)
T ss_dssp HHHHHTHHCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHH
Confidence 888888876544456788888777654
No 61
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.83 E-value=6.7e-19 Score=175.49 Aligned_cols=301 Identities=22% Similarity=0.281 Sum_probs=183.7
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhc---CCCeeee
Q 006539 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQE---EAPIRVP 180 (641)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~---~~~~~~~ 180 (641)
.+..+||||||||.+|.++|+.|+|. |.+|.||||.-.-... .-|..++|.....|.. +... +.-....
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kd------GRrVhVIERDl~EPdR-ivGEllQPGG~~~L~~-LGl~Dcve~IDAQ~ 113 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKD------GRRVHVIERDLSEPDR-IVGELLQPGGYLALSK-LGLEDCVEGIDAQR 113 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhC------CcEEEEEecccccchH-HHHHhcCcchhHHHHH-hCHHHHhhcccceE
Confidence 44579999999999999999999999 9999999998643332 2355566654433321 1111 1111122
Q ss_pred ccCccEEEeecCccccCCCCCCCC----CcEEeeHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeCccc
Q 006539 181 VSSDKFWFLTKDRAFSLPSPFSNR----GNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMG 255 (641)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g 255 (641)
+....++ .+....++|.+..+. .+...+.+.|.+.|++.+... +|++..|+ |.++.+++ |.|.||+..+
T Consensus 114 v~Gy~if--k~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGt-V~sLlee~-gvvkGV~yk~-- 187 (509)
T KOG1298|consen 114 VTGYAIF--KDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGT-VKSLLEEE-GVVKGVTYKN-- 187 (509)
T ss_pred eeeeEEE--eCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeee-HHHHHhcc-CeEEeEEEec--
Confidence 2222222 344555555554332 255677899999999988764 69998776 88887776 7899999987
Q ss_pred cccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccC
Q 006539 256 IAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP 335 (641)
Q Consensus 256 ~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~ 335 (641)
++|++ .+..|-++|+|||+.|.+||.+.+.- ...-..+.+|+.. + ......++.. |.+
T Consensus 188 --k~gee-------~~~~ApLTvVCDGcfSnlRrsL~~~~------v~~V~S~fVG~vl--~-N~~l~~p~hg-hvI--- 245 (509)
T KOG1298|consen 188 --KEGEE-------VEAFAPLTVVCDGCFSNLRRSLCDPK------VEEVPSYFVGLVL--K-NCRLPAPNHG-HVI--- 245 (509)
T ss_pred --CCCce-------EEEecceEEEecchhHHHHHHhcCCc------ccccchheeeeee--c-CCCCCCCCcc-eEE---
Confidence 55543 67789999999999999999874211 1112234444421 1 1111122222 222
Q ss_pred CCCCCcceEEEEEeCCCeEEEEEEEccCCCCCCCChHHHHHHHhc--CCc----hhhhc----cCCceeeeccEEeecCC
Q 006539 336 LDQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKH--HPA----IKPLL----EGGTVVQYGARTLNEGG 405 (641)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~--~p~----i~~~l----~~~~~~~~~~~~i~~~g 405 (641)
+.+-.. ..+|++....+.+.+-+..+. -|.+..-+.-..+++ .|. +++.+ +++... ..|..
T Consensus 246 L~~psp--il~Y~ISStEvRcl~~v~g~~-~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~ir-----smpn~- 316 (509)
T KOG1298|consen 246 LSKPSP--ILVYQISSTEVRCLVDVPGQK-LPSIANGEMATYMKESVAPQIPEKLRESFLEAVDEGNIR-----SMPNS- 316 (509)
T ss_pred ecCCCc--EEEEEecchheEEEEecCccc-CCcccchhHHHHHHHhhCcCCCHHHHHHHHHHhhccchh-----cCccc-
Confidence 111122 578999887888776664321 122222222122221 233 23322 222211 12211
Q ss_pred CccCC--ccccCCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHhc
Q 006539 406 LQSIP--YPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFG 451 (641)
Q Consensus 406 ~~~~~--~~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~ 451 (641)
.+| ....++++|+|||..+-+|++|.||.-|+.|..++-+.|..
T Consensus 317 --~mpa~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~p 362 (509)
T KOG1298|consen 317 --SMPATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKP 362 (509)
T ss_pred --cCCCCcCCCCceEEEcccccccCCccCCceEeehhHHHHHHHHhcc
Confidence 222 23457999999999999999999999999999999998866
No 62
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=99.82 E-value=3.3e-21 Score=157.51 Aligned_cols=77 Identities=18% Similarity=0.455 Sum_probs=64.2
Q ss_pred ccc-CCCCCcEEecCCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCC-eeEECC
Q 006539 553 NHE-HDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQN-IKWTVP 630 (641)
Q Consensus 553 ~~~-~~~~~hl~~~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~-i~w~~p 630 (641)
.|+ +++.+||.|++.. ..|. .++|+.+||++||+..+ +| .+++|+++|++||+|+++||..+ |+|+||
T Consensus 15 ~y~vd~~~~HI~i~~~~--~~~~----~k~C~~aCPagA~~~~e--~G--~V~vd~e~CigCg~C~~~C~~~~~~~W~yP 84 (95)
T PRK15449 15 KFNVDEEHPHIVVKADA--DKQA----LELLVKACPAGLYKKQD--DG--SVRFDYAGCLECGTCRILGLGSALEQWEYP 84 (95)
T ss_pred eeECCCCCCcEEEcCCC--Cchh----hhHHHHHCCHhhcEeCC--CC--CEEEcCCCCCcchhhhhhcCCCCccCccCC
Confidence 344 5577999997653 3344 78999999999998742 33 79999999999999999999886 699999
Q ss_pred CCCCCCCcC
Q 006539 631 EGGGGPGYS 639 (641)
Q Consensus 631 ~gg~g~~~~ 639 (641)
+||+||+||
T Consensus 85 rgg~GV~yr 93 (95)
T PRK15449 85 RGTFGVEFR 93 (95)
T ss_pred CCCcCEEEe
Confidence 999999997
No 63
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.78 E-value=1.4e-16 Score=169.10 Aligned_cols=298 Identities=17% Similarity=0.130 Sum_probs=157.6
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEEE
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (641)
||+|||||+||+++|+.|++. .+|++|+|+|+.+..++.... ++....+.+....+-. ..+........+.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~----~~g~~V~lle~~~~~~~~~tw--~~~~~~~~~~~~~~~~--~~v~~~W~~~~v~- 71 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRA----RPDFRIRVIEAGRTIGGNHTW--SFFDSDLSDAQHAWLA--DLVQTDWPGYEVR- 71 (370)
T ss_pred CEEEECccHHHHHHHHHHHhc----CCCCeEEEEeCCCCCCCcccc--eecccccchhhhhhhh--hhheEeCCCCEEE-
Confidence 899999999999999999974 349999999998866542211 1111111100000000 0011111111111
Q ss_pred eecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccccccc
Q 006539 189 LTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQR 268 (641)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~ 268 (641)
.......++ .....+++..|.+.|.+.+.. .++.+.+|+++ ++++ |++.+
T Consensus 72 -~~~~~~~l~-----~~Y~~I~r~~f~~~l~~~l~~---~i~~~~~V~~v--~~~~----v~l~d--------------- 121 (370)
T TIGR01789 72 -FPKYRRKLK-----TAYRSMTSTRFHEGLLQAFPE---GVILGRKAVGL--DADG----VDLAP--------------- 121 (370)
T ss_pred -CcchhhhcC-----CCceEEEHHHHHHHHHHhhcc---cEEecCEEEEE--eCCE----EEECC---------------
Confidence 111111111 235678999999998765533 37778889887 3322 44444
Q ss_pred ceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcE-EEEeccCCCCCCcceEEEE
Q 006539 269 GVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEI-LHTLGWPLDQKTYGGSFLY 347 (641)
Q Consensus 269 g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~g~~~~~ 347 (641)
|.+++|++||+|+|.+|.-.. ....+...|+. |+.... +.++.. ..-+.++-.. .+...|+.
T Consensus 122 g~~~~A~~VI~A~G~~s~~~~-------------~~~~Q~f~G~~--~r~~~p-~~~~~~~lMD~~~~q~~-g~~F~Y~l 184 (370)
T TIGR01789 122 GTRINARSVIDCRGFKPSAHL-------------KGGFQVFLGRE--MRLQEP-HGLENPIIMDATVDQLA-GYRFVYVL 184 (370)
T ss_pred CCEEEeeEEEECCCCCCCccc-------------cceeeEEEEEE--EEEcCC-CCCCccEEEeeeccCCC-CceEEEEC
Confidence 678999999999998874111 01223344443 344433 444432 2223332222 12123445
Q ss_pred EeCCCeEEEEEEEccCCCCCCCChHHHHHHHhcCCchhhhccCCceeeeccEEeecCCCccCC-cc-ccCCEEEEecCCC
Q 006539 348 HMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIP-YP-VFPGGAIIGCAAG 425 (641)
Q Consensus 348 ~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~-~~-~~~~v~LiGDAAh 425 (641)
|.+++.+.|......+. +.+...+..+++.... ...-+...+.+......+|...-..++ .| ..++++++|||||
T Consensus 185 P~~~~~~lvE~T~~s~~--~~l~~~~l~~~l~~~~-~~~g~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg 261 (370)
T TIGR01789 185 PLGSHDLLIEDTYYADD--PLLDRNALSQRIDQYA-RANGWQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLRAG 261 (370)
T ss_pred cCCCCeEEEEEEeccCC--CCCCHHHHHHHHHHHH-HHhCCCceEEEEeeeeEEeeecCCCcccccccCCceeeeecccc
Confidence 77888888764432221 3333322222222110 001111223332222345431100011 12 2456999999999
Q ss_pred CCCCCCccchHHHHHHHHHHHHHHh-ccccCCchHHHHHHH
Q 006539 426 FLNVPKIKGTHTAMKSGMLAAEAGF-GVLHEDSNMEIYWDT 465 (641)
Q Consensus 426 ~~~P~~g~G~~~Ai~da~~lA~~l~-~~~~~~~~l~~Ye~~ 465 (641)
.++|.+|+|++.|++++..+|+.+. ....-..++..|...
T Consensus 262 ~~~P~tGyg~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~ 302 (370)
T TIGR01789 262 LTHPTTGYSLPVAVENADALAAQPDLSSEQLAAFIDSRARR 302 (370)
T ss_pred cccccccccHHHHHHHHHHHHhccCcCccchhhhhhHHHHH
Confidence 9999999999999999999998885 211112335666654
No 64
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.76 E-value=4.4e-16 Score=165.95 Aligned_cols=281 Identities=19% Similarity=0.189 Sum_probs=162.8
Q ss_pred cEEEECCCHHHHHHHHHH--HhhchhcCCCCcEEEEcCCCCCCCccccccccChHH---HHHhh-hhhhhcCCCeeeecc
Q 006539 109 DVVIVGAGPAGLSAAIRL--KQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRA---LNELL-PQWKQEEAPIRVPVS 182 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~L--a~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~---l~~l~-~~~~~~~~~~~~~~~ 182 (641)
|||||||||||+++|.+| ++. |++|+|||+....+.......++.... +++++ ..|.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~------g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~----------- 63 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP------GLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWS----------- 63 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC------CCEEEEEcCCccccccCCcccccccccccchHHHHheecC-----------
Confidence 899999999999999999 555 999999999877622111122222111 11111 1111
Q ss_pred CccEEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCc
Q 006539 183 SDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSK 262 (641)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~ 262 (641)
...+.+ ........ ......+++..|.+.|.+++.+.| .++.+..|++|+.++++ +.|++.+
T Consensus 64 ~~~v~~--~~~~~~~~----~~~Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~~--~~v~~~~--------- 125 (374)
T PF05834_consen 64 GWRVYF--PDGSRILI----DYPYCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGDG--VLVVLAD--------- 125 (374)
T ss_pred ceEEEe--CCCceEEc----ccceEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCce--EEEEECC---------
Confidence 111111 11111111 123458999999999999999444 56678899999888753 3467766
Q ss_pred ccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccCCCCC--C
Q 006539 263 KENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQK--T 340 (641)
Q Consensus 263 ~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~ 340 (641)
|.+++|++||+|+|..+...+ ....+...|+.. ++....+.++. ...+.|..... .
T Consensus 126 ------g~~i~a~~VvDa~g~~~~~~~-------------~~~~Q~f~G~~v--~~~~~~f~~~~-~~lMD~r~~~~~~~ 183 (374)
T PF05834_consen 126 ------GRTIRARVVVDARGPSSPKAR-------------PLGLQHFYGWEV--ETDEPVFDPDT-ATLMDFRVPQSADG 183 (374)
T ss_pred ------CCEEEeeEEEECCCccccccc-------------ccccceeEEEEE--eccCCCCCCCc-eEEEEecccCCCCC
Confidence 679999999999996654211 112233445432 33333233332 23334433322 3
Q ss_pred cceEEEEEeCCCeEEEEEEEccCCCCCCCChHHHHHHHhcCCchhh-hccCCceeeeccEEeecCCCccCCccccCCEEE
Q 006539 341 YGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKP-LLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAI 419 (641)
Q Consensus 341 ~g~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~-~l~~~~~~~~~~~~i~~~g~~~~~~~~~~~v~L 419 (641)
....|++|.+++++.|....-.. .+.+...+..+++.. .++. -++..+.++.....||.... ..++...++++.
T Consensus 184 ~~F~Y~lP~~~~~alvE~T~fs~--~~~~~~~~~~~~l~~--~l~~~g~~~~~i~~~E~G~IPm~~~-~~~~~~~~~v~~ 258 (374)
T PF05834_consen 184 PSFLYVLPFSEDRALVEETSFSP--RPALPEEELKARLRR--YLERLGIDDYEILEEERGVIPMTTG-GFPPRFGQRVIR 258 (374)
T ss_pred ceEEEEEEcCCCeEEEEEEEEcC--CCCCCHHHHHHHHHH--HHHHcCCCceeEEEeecceeecccC-CCccccCCCeee
Confidence 44467788999898887664322 221222211122211 1111 11122233322334555111 112444567999
Q ss_pred EecCCCCCCCCCccchHHHHHHHHHHHHHHhc
Q 006539 420 IGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFG 451 (641)
Q Consensus 420 iGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~~ 451 (641)
+|+|+|.++|.+|-++..+...+..+|+.|.+
T Consensus 259 iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 259 IGTAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred EEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999888888888876
No 65
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.75 E-value=6.3e-17 Score=163.35 Aligned_cols=331 Identities=17% Similarity=0.176 Sum_probs=180.7
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCC--CCCCCccccc------cccChHHH--HHhhhhhhhcC
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKG--AEVGAHIISG------NVFEPRAL--NELLPQWKQEE 174 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~--~~~g~~~~~g------~~i~~~~l--~~l~~~~~~~~ 174 (641)
...||||||||||+|+++|..|... +....+||.++|-. +.++.-..+. -.+++..+ .+.+..|....
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~sn--p~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~ 111 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSN--PPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIF 111 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccC--CccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhh
Confidence 3479999999999999999999853 44457899999987 4443321111 11233332 23344555431
Q ss_pred CCeeeeccCccEEEee--cCccccCCCC-CCCCCcEEeeHHHHHHHHHH-HH--HHcCCEEecCceEEEEEE------cC
Q 006539 175 APIRVPVSSDKFWFLT--KDRAFSLPSP-FSNRGNYVISLSQLVRWLGG-KA--EELGVEIYPGFAASEILY------DA 242 (641)
Q Consensus 175 ~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~v~~~~l~~~L~~-~a--~~~Gv~i~~g~~v~~i~~------~~ 242 (641)
......+ ..+...+ ....+.+... +...-++++....+...|+. ++ +..+|+|+...++.++.. ++
T Consensus 112 ~~R~~~~--~~~~v~Ds~s~a~I~~~~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~ 189 (481)
T KOG3855|consen 112 HDRYQKF--SRMLVWDSCSAALILFDHDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKND 189 (481)
T ss_pred hhccccc--cceeeecccchhhhhhccccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCC
Confidence 1111111 1111111 1112222211 11112577777777777773 32 235699999999887765 34
Q ss_pred CCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCC
Q 006539 243 DNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGK 322 (641)
Q Consensus 243 ~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 322 (641)
++-+..+++.+ |..+..|++|+|||.+|.+|+.. +++. .... ....|+.....+..+.
T Consensus 190 n~~~~~i~l~d---------------g~~~~~~LLigAdg~Ns~vR~~s----nid~-~~~n--y~~havVAtl~l~~~~ 247 (481)
T KOG3855|consen 190 NGMWFHITLTD---------------GINFATDLLIGADGFNSVVRKAS----NIDV-ASWN--YDQHAVVATLKLEEEA 247 (481)
T ss_pred CcceEEEEecc---------------Cceeeeceeeccccccchhhhhc----CCCc-cccc--ccceeeeEEEEecccc
Confidence 45566777776 78999999999999999998843 5553 1112 2223333333444433
Q ss_pred CCCCcEEEEeccCCCCCCcceEEEEEeCCCeEEEEEEEccCCCCCCC-ChHHHHHHH------hcCCch-----------
Q 006539 323 HNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYHNPFL-NPYEEFQKF------KHHPAI----------- 384 (641)
Q Consensus 323 ~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~~~~d~~~~~~-~~~~~~~~~------~~~p~i----------- 384 (641)
...+..++-| +.. |..-+.|+.++..++.+.........-. -|.+.|-.+ ..+|.+
T Consensus 248 ~~~~~AwQRF---lP~---GpiAllpl~d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~ 321 (481)
T KOG3855|consen 248 ILNGVAWQRF---LPT---GPIALLPLSDTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALN 321 (481)
T ss_pred cccchhHHhc---CCC---CceeecccccccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhc
Confidence 3344333333 222 3334566666655555554221000000 001111110 000000
Q ss_pred ------hhhccCCce---eeec---------cEEeecCCCccCCccccCCEEEEecCCCCCCCCCccchHHHHHHHHHHH
Q 006539 385 ------KPLLEGGTV---VQYG---------ARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAA 446 (641)
Q Consensus 385 ------~~~l~~~~~---~~~~---------~~~i~~~g~~~~~~~~~~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA 446 (641)
..++...+. ..+. .++.-..|+.....+..+|+.|+|||||.++|..|||+|+++.|...|.
T Consensus 322 ~~~~~~~sl~~~~k~~~~~q~pp~V~~v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~ 401 (481)
T KOG3855|consen 322 GRAQLSESLLNTSKRLANQQYPPSVFEVGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILV 401 (481)
T ss_pred chhhccHHHHhccCcccccccCCeEEEecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHH
Confidence 011110000 0111 1111123333344677789999999999999999999999999999999
Q ss_pred HHHhccccCC------chHHHHHHHHH
Q 006539 447 EAGFGVLHED------SNMEIYWDTLQ 467 (641)
Q Consensus 447 ~~l~~~~~~~------~~l~~Ye~~~~ 467 (641)
+.+.+++..+ ..|+.|+..+.
T Consensus 402 ~sL~~ai~~g~DlgS~~~L~~y~~~~~ 428 (481)
T KOG3855|consen 402 DSLSEAIVSGLDLGSVEHLEPYERERL 428 (481)
T ss_pred HHHHHHHHhcccccchhhhhHHHHHHh
Confidence 9998877542 45666765553
No 66
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.68 E-value=1.1e-15 Score=153.56 Aligned_cols=160 Identities=23% Similarity=0.319 Sum_probs=112.0
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHH-HHH-hhhhhhhcCCCeeeec
Q 006539 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRA-LNE-LLPQWKQEEAPIRVPV 181 (641)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~-l~~-l~~~~~~~~~~~~~~~ 181 (641)
+..++||+||||||||+++|+.|++. |++|+|+||...+|+....|+.+.++. +.. ....+.....+
T Consensus 22 ~~~~~DVvIVGgGpAGl~AA~~la~~------G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~----- 90 (257)
T PRK04176 22 DYLEVDVAIVGAGPSGLTAAYYLAKA------GLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIR----- 90 (257)
T ss_pred HhccCCEEEECccHHHHHHHHHHHhC------CCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCC-----
Confidence 34579999999999999999999998 999999999988877554444322211 111 01111111111
Q ss_pred cCccEEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCC
Q 006539 182 SSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (641)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~ 261 (641)
......+.|.+++..+...|.+++.+.|+++++++.|+++..++++++.+|.+.+.....+|.
T Consensus 91 -----------------~~~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~ 153 (257)
T PRK04176 91 -----------------YKEVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGL 153 (257)
T ss_pred -----------------ceeecCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCC
Confidence 001112356788999999999999999999999999999988765578888876432222221
Q ss_pred cccccccceEEEcCEEEEcCCCCCchhHHHHHHc
Q 006539 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNF 295 (641)
Q Consensus 262 ~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~ 295 (641)
. .+..+++||.||+|+|.++.+.+.+.++.
T Consensus 154 ~----~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~ 183 (257)
T PRK04176 154 H----VDPLTIEAKAVVDATGHDAEVVSVLARKG 183 (257)
T ss_pred C----CCcEEEEcCEEEEEeCCCcHHHHHHHHHc
Confidence 1 11368999999999999999999886543
No 67
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.67 E-value=1.7e-15 Score=151.64 Aligned_cols=159 Identities=26% Similarity=0.406 Sum_probs=114.3
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHH-----HHhhhhhhhcCCCeee
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRAL-----NELLPQWKQEEAPIRV 179 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l-----~~l~~~~~~~~~~~~~ 179 (641)
..++||+||||||+||++|+.|++. |++|+|+||...+|+....++.+.+... .+++..+
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~------G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~--------- 83 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKN------GLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEF--------- 83 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHC---------
Confidence 3579999999999999999999999 9999999999988765544443222110 1111111
Q ss_pred eccCccEEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCC-cEEEEEeCcccccc
Q 006539 180 PVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADN-KVIGIGTNDMGIAK 258 (641)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g-~v~~V~~~~~g~~~ 258 (641)
.++......+.+..++..+.+.|.+++.+.|+++++++.+.++..++++ ++.+|.++......
T Consensus 84 ----------------gi~~~~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~ 147 (254)
T TIGR00292 84 ----------------GIRYEDEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIEL 147 (254)
T ss_pred ----------------CCCeeeccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccc
Confidence 0111111122355688999999999999999999999999999887643 68888886543333
Q ss_pred CCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCC
Q 006539 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (641)
Q Consensus 259 ~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~ 298 (641)
+|.. .+..+++|++||+|||..+.+.+.+.++..+.
T Consensus 148 ~g~~----~d~~~i~Ak~VVdATG~~a~v~~~l~~~~~~~ 183 (254)
T TIGR00292 148 AGLH----VDPLTQRSRVVVDATGHDAEIVAVCAKKIVLE 183 (254)
T ss_pred cCCC----CCCEEEEcCEEEEeecCCchHHHHHHHHcCcc
Confidence 3321 01368999999999999999999888777655
No 68
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.63 E-value=2.3e-15 Score=141.51 Aligned_cols=157 Identities=27% Similarity=0.441 Sum_probs=106.5
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHH-----HHhhhhhhhcCCCee
Q 006539 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRAL-----NELLPQWKQEEAPIR 178 (641)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l-----~~l~~~~~~~~~~~~ 178 (641)
+..++||+||||||+||++|+.|++. |+||+|+|++..+|+....|+.+-++.. ..+++++.
T Consensus 14 ~~~~~DV~IVGaGpaGl~aA~~La~~------g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elg------- 80 (230)
T PF01946_consen 14 DYLEYDVAIVGAGPAGLTAAYYLAKA------GLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELG------- 80 (230)
T ss_dssp HHTEESEEEE--SHHHHHHHHHHHHH------TS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT-------
T ss_pred hhccCCEEEECCChhHHHHHHHHHHC------CCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCC-------
Confidence 34579999999999999999999999 9999999999998887655654332111 12222221
Q ss_pred eeccCccEEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCcccccc
Q 006539 179 VPVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (641)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~ 258 (641)
++......+.|+.+...+...|...+.+.|++|+..+.|+++...++++|.||.++...+..
T Consensus 81 ------------------i~y~~~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~ 142 (230)
T PF01946_consen 81 ------------------IPYEEYGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEM 142 (230)
T ss_dssp ---------------------EE-SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHT
T ss_pred ------------------ceeEEeCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhH
Confidence 11111122356778899999999999999999999999999988776789999888655544
Q ss_pred CCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHc
Q 006539 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNF 295 (641)
Q Consensus 259 ~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~ 295 (641)
.|-. .+-.+++|++||.|||.-+.+.+.+.++.
T Consensus 143 ~glH----vDPl~i~ak~ViDaTGHda~v~~~~~kk~ 175 (230)
T PF01946_consen 143 AGLH----VDPLTIRAKVVIDATGHDAEVVRVLAKKL 175 (230)
T ss_dssp T--T-----B-EEEEESEEEE---SSSSSTSHHHHHH
T ss_pred hhcC----CCcceEEEeEEEeCCCCchHHHHHHHHHh
Confidence 4432 12378999999999999988777666555
No 69
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.62 E-value=1e-14 Score=135.90 Aligned_cols=155 Identities=25% Similarity=0.420 Sum_probs=116.6
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHH-----HHHhhhhhhhcCCCeee
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRA-----LNELLPQWKQEEAPIRV 179 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~-----l~~l~~~~~~~~~~~~~ 179 (641)
..+.||+||||||+||+||+.|++. |+||+|+||+-.+|+...-||.+-++. ..++++++.
T Consensus 28 ~~esDViIVGaGPsGLtAAyyLAk~------g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~g-------- 93 (262)
T COG1635 28 YLESDVIIVGAGPSGLTAAYYLAKA------GLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFG-------- 93 (262)
T ss_pred hhhccEEEECcCcchHHHHHHHHhC------CceEEEEEeecccCCcccccccccceeeecchHHHHHHHhC--------
Confidence 3578999999999999999999999 999999999999988776666543322 122333221
Q ss_pred eccCccEEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccC
Q 006539 180 PVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (641)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~ 259 (641)
++......+-|+.+...+...|...+.+.|++|+.++.|+++...++.+|.||.++...+...
T Consensus 94 -----------------I~ye~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~ 156 (262)
T COG1635 94 -----------------IRYEEEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMA 156 (262)
T ss_pred -----------------CcceecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhc
Confidence 122222234567888999999999999999999999999999988754788998887554444
Q ss_pred CCcccccccceEEEcCEEEEcCCCCCchhHHHHHH
Q 006539 260 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKN 294 (641)
Q Consensus 260 g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~ 294 (641)
|-. .+-..++|++||.|||.-..+-+.+.++
T Consensus 157 ~lh----vDPl~i~a~~VvDaTGHda~v~~~~~kr 187 (262)
T COG1635 157 GLH----VDPLTIRAKAVVDATGHDAEVVSFLAKR 187 (262)
T ss_pred ccc----cCcceeeEEEEEeCCCCchHHHHHHHHh
Confidence 432 1236899999999999988877766543
No 70
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.55 E-value=2.6e-13 Score=152.55 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=44.5
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEE
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 628 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~ 628 (641)
++..|..|..-.-...|..+||.+++...++ + ..+.+|++.|+.||.|..+||++||++.
T Consensus 502 ~~~rCl~C~~c~~C~~C~~~Cp~~ai~~~~~--~-~~~~i~~~~C~~Cg~C~~~CP~~Ai~~~ 561 (564)
T PRK12771 502 EAARCLSCGNCFECDNCYGACPQDAIIKLGP--G-RRYHFDYDKCTGCHICADVCPCGAIEMG 561 (564)
T ss_pred hcccCcccccccccchhhhhCChhheeeecC--C-ceEEEecccCcChhHHHhhcCcCceEec
Confidence 4566666621011246999999999887533 1 1478999999999999999999999874
No 71
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.53 E-value=3.4e-12 Score=147.93 Aligned_cols=42 Identities=40% Similarity=0.529 Sum_probs=38.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~ 153 (641)
...+|+|||||||||+||+.|++. |++|+|+|+.+.+|+...
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~------G~~VTV~Ek~~~lGG~l~ 577 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA------GHPVTVFEKKEKPGGVVK 577 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC------CCeEEEEecccccCceee
Confidence 357999999999999999999999 999999999988887653
No 72
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.51 E-value=5.1e-12 Score=145.81 Aligned_cols=42 Identities=36% Similarity=0.523 Sum_probs=37.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~ 153 (641)
...+|+|||||||||++|+.|++. |++|+|+|+.+.+|+...
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~------G~~VtV~Ek~~~~GG~lr 579 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARA------GHPVTVFEREENAGGVVK 579 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc------CCeEEEEecccccCccee
Confidence 356899999999999999999999 999999999988887653
No 73
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.49 E-value=3e-13 Score=138.01 Aligned_cols=150 Identities=27% Similarity=0.338 Sum_probs=100.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc-ccccc-c---ChHHHHHhhhhhhhcC----CC
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNV-F---EPRALNELLPQWKQEE----AP 176 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~-i---~~~~l~~l~~~~~~~~----~~ 176 (641)
+.+||+|||||||||.||+.++++ |.+|+|||+.+.+|... .+|+. . +....++++....... ..
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~------G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sa 75 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKA------GRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSA 75 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhc------CCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHH
Confidence 468999999999999999999999 99999999999987665 23321 1 1122233322222100 00
Q ss_pred --------eeeeccCccEEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEE
Q 006539 177 --------IRVPVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIG 248 (641)
Q Consensus 177 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~ 248 (641)
+...+...++.+..+..+--||.. ..-..+.+.|..++++.||+|+.+++|.++..++++ ..
T Consensus 76 l~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~s--------dkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~--f~ 145 (408)
T COG2081 76 LARFTPEDFIDWVEGLGIALKEEDLGRMFPDS--------DKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSG--FR 145 (408)
T ss_pred HHhCCHHHHHHHHHhcCCeeEEccCceecCCc--------cchHHHHHHHHHHHHHcCcEEEecceEEeEEecCce--EE
Confidence 111122223333332222223321 235788999999999999999999999999988733 35
Q ss_pred EEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 249 IGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 249 V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
|.+.+ |.+++||.+|+|+|..|.
T Consensus 146 l~t~~---------------g~~i~~d~lilAtGG~S~ 168 (408)
T COG2081 146 LDTSS---------------GETVKCDSLILATGGKSW 168 (408)
T ss_pred EEcCC---------------CCEEEccEEEEecCCcCC
Confidence 77776 568999999999996553
No 74
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.46 E-value=7.8e-12 Score=132.35 Aligned_cols=162 Identities=30% Similarity=0.416 Sum_probs=101.7
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCc-cccccccChH-------HHH----Hhhhhhhhc---
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH-IISGNVFEPR-------ALN----ELLPQWKQE--- 173 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~-~~~g~~i~~~-------~l~----~l~~~~~~~--- 173 (641)
||+|||||++|+++|+.|++. |++|+|||+....++. ..+++.+.+. .+. +.+..|...
T Consensus 1 DvvIIGaGi~G~~~A~~La~~------G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 74 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR------GHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEE 74 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT------TSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHC------CCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhh
Confidence 899999999999999999998 9999999999433322 2334444221 111 112222221
Q ss_pred -CCCeeeeccC-ccEE--------------------------EeecC-ccccCCCCC-------CCCCcEEeeHHHHHHH
Q 006539 174 -EAPIRVPVSS-DKFW--------------------------FLTKD-RAFSLPSPF-------SNRGNYVISLSQLVRW 217 (641)
Q Consensus 174 -~~~~~~~~~~-~~~~--------------------------~~~~~-~~~~~~~~~-------~~~~~~~v~~~~l~~~ 217 (641)
..+.. ... ..+. +++.. ..-.+|... .......++...+.+.
T Consensus 75 ~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~ 152 (358)
T PF01266_consen 75 YGIPVG--FRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQA 152 (358)
T ss_dssp TTSSCE--EEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHH
T ss_pred cCcccc--cccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhh
Confidence 11111 101 1111 11100 000011111 1133556899999999
Q ss_pred HHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCC
Q 006539 218 LGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKL 297 (641)
Q Consensus 218 L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~ 297 (641)
|.+.+++.|++|+.+++|+++..++ +.+.+|.+.+ |. ++||.||+|+|.++ ..+.+..+.
T Consensus 153 l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v~gv~~~~---------------g~-i~ad~vV~a~G~~s---~~l~~~~~~ 212 (358)
T PF01266_consen 153 LAAEAQRAGVEIRTGTEVTSIDVDG-GRVTGVRTSD---------------GE-IRADRVVLAAGAWS---PQLLPLLGL 212 (358)
T ss_dssp HHHHHHHTT-EEEESEEEEEEEEET-TEEEEEEETT---------------EE-EEECEEEE--GGGH---HHHHHTTTT
T ss_pred hHHHHHHhhhhccccccccchhhcc-cccccccccc---------------cc-cccceeEecccccc---eeeeecccc
Confidence 9999999999999999999999887 5677799987 55 99999999999885 456666665
Q ss_pred C
Q 006539 298 R 298 (641)
Q Consensus 298 ~ 298 (641)
.
T Consensus 213 ~ 213 (358)
T PF01266_consen 213 D 213 (358)
T ss_dssp S
T ss_pred c
Confidence 3
No 75
>PLN02661 Putative thiazole synthesis
Probab=99.42 E-value=1e-11 Score=127.66 Aligned_cols=153 Identities=23% Similarity=0.353 Sum_probs=95.8
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccc-cChH----HHHHhhhhhhhcCCCee
Q 006539 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNV-FEPR----ALNELLPQWKQEEAPIR 178 (641)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~-i~~~----~l~~l~~~~~~~~~~~~ 178 (641)
+..++||+|||||++|+++|+.|++. +|++|+||||...+|+....++. ++.. ...+++.++. .+
T Consensus 89 ~~~~~DVlIVGaG~AGl~AA~~La~~-----~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElG---V~-- 158 (357)
T PLN02661 89 TYADTDVVIVGAGSAGLSCAYELSKN-----PNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELG---VP-- 158 (357)
T ss_pred hcccCCEEEECCHHHHHHHHHHHHHc-----CCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcC---CC--
Confidence 34579999999999999999999974 38999999999887664333322 2111 1111222111 11
Q ss_pred eeccCccEEEeecCccccCCCCCCCCCcEEe--eHHHHHHHHHHHHHH-cCCEEecCceEEEEEEcCCCcEEEEEeCccc
Q 006539 179 VPVSSDKFWFLTKDRAFSLPSPFSNRGNYVI--SLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMG 255 (641)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g 255 (641)
+ ...++|.+ +-..+.+.|.+++.+ .|++++.++.+.++..++ +++.||.++...
T Consensus 159 ------------------f----d~~dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~-grVaGVVvnw~~ 215 (357)
T PLN02661 159 ------------------Y----DEQENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-DRVGGVVTNWAL 215 (357)
T ss_pred ------------------c----ccCCCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecC-CEEEEEEeecch
Confidence 1 00112222 334555677776655 689999999999998876 678898875432
Q ss_pred cccCCCcccccccceEEEcCEEEEcCCCCCchhHH
Q 006539 256 IAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEK 290 (641)
Q Consensus 256 ~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~ 290 (641)
...++......+ ...++||.||+|||..+.+...
T Consensus 216 v~~~~~~~s~~d-p~~I~AkaVVlATGh~g~~ga~ 249 (357)
T PLN02661 216 VAQNHDTQSCMD-PNVMEAKVVVSSCGHDGPFGAT 249 (357)
T ss_pred hhhccCCCCccc-eeEEECCEEEEcCCCCCcchhh
Confidence 212221100011 1478999999999987765443
No 76
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.42 E-value=5.3e-11 Score=129.23 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=55.9
Q ss_pred EeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCch
Q 006539 208 VISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 208 ~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~v 287 (641)
.++...+.+.|.+.+++.|++|+.+++|++++.++ +.+.+|++.+ .++++|.||+|+|.++.
T Consensus 197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~v~t~~----------------~~~~a~~VV~a~G~~~~- 258 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG-GRITGVQTGG----------------GVITADAYVVALGSYST- 258 (416)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEEEEEEeCC----------------cEEeCCEEEECCCcchH-
Confidence 35677899999999999999999999999998766 4455677654 47899999999999973
Q ss_pred hHHHHHHcCCC
Q 006539 288 SEKLIKNFKLR 298 (641)
Q Consensus 288 r~~l~~~~~~~ 298 (641)
.+.+..++.
T Consensus 259 --~l~~~~g~~ 267 (416)
T PRK00711 259 --ALLKPLGVD 267 (416)
T ss_pred --HHHHHhCCC
Confidence 455555544
No 77
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.40 E-value=2.1e-12 Score=137.74 Aligned_cols=145 Identities=28% Similarity=0.394 Sum_probs=78.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccc-cc--cc------cC-----------hHHHHHhh
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SG--NV------FE-----------PRALNELL 167 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~-~g--~~------i~-----------~~~l~~l~ 167 (641)
|||+|||||||||.||+.|++. |++|+|+||.+.+|.... +| .| .+ ++.+...+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~------g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l 74 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEK------GARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSAL 74 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHT------T--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHH
Confidence 7999999999999999999999 999999999998865432 22 11 11 11111111
Q ss_pred hhhhhcCCCeeeeccCccEEEeecCccccCCCCCCCCCcEEe--eHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCc
Q 006539 168 PQWKQEEAPIRVPVSSDKFWFLTKDRAFSLPSPFSNRGNYVI--SLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNK 245 (641)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~ 245 (641)
..|...+ +...+...++.+..+... .-|.. ....+.+.|.+.+++.||+|+++++|.+++.+++ .
T Consensus 75 ~~f~~~d--~~~ff~~~Gv~~~~~~~g----------r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~-~ 141 (409)
T PF03486_consen 75 KRFSPED--LIAFFEELGVPTKIEEDG----------RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED-G 141 (409)
T ss_dssp HHS-HHH--HHHHHHHTT--EEE-STT----------EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT-E
T ss_pred hcCCHHH--HHHHHHhcCCeEEEcCCC----------EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC-c
Confidence 1111000 000000111111110000 01111 3578889999999999999999999999998774 4
Q ss_pred EEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 246 VIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 246 v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
+..|.+.+ +.++.||.||+|+|..|.
T Consensus 142 ~f~v~~~~---------------~~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 142 VFGVKTKN---------------GGEYEADAVILATGGKSY 167 (409)
T ss_dssp EEEEEETT---------------TEEEEESEEEE----SSS
T ss_pred eeEeeccC---------------cccccCCEEEEecCCCCc
Confidence 55788843 479999999999998763
No 78
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.39 E-value=1.2e-10 Score=126.02 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=55.2
Q ss_pred EeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCch
Q 006539 208 VISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 208 ~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~v 287 (641)
.++...+...|.+.+.+.|++++.+++|++++..+++.+.+|++.+ | ++.++.||+|+|.++.
T Consensus 179 ~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~---------------g-~i~a~~vVvaagg~~~- 241 (407)
T TIGR01373 179 TARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTR---------------G-FIGAKKVGVAVAGHSS- 241 (407)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCC---------------c-eEECCEEEECCChhhH-
Confidence 4566778888999999999999999999999865446666788765 4 6899999999888864
Q ss_pred hHHHHHHcCCC
Q 006539 288 SEKLIKNFKLR 298 (641)
Q Consensus 288 r~~l~~~~~~~ 298 (641)
.+.+..++.
T Consensus 242 --~l~~~~g~~ 250 (407)
T TIGR01373 242 --VVAAMAGFR 250 (407)
T ss_pred --HHHHHcCCC
Confidence 343444544
No 79
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.35 E-value=1.6e-10 Score=125.14 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=52.1
Q ss_pred eeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCchh
Q 006539 209 ISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLS 288 (641)
Q Consensus 209 v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr 288 (641)
++...+...|.+.+.+.|++++.+++|+++..++ +.+ .|.+.+. ++. ++.+++||.||+|+|.++.
T Consensus 194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~-~~~-~v~~~~~----~~~------~~~~i~a~~vV~a~G~~s~-- 259 (410)
T PRK12409 194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDG-GGV-VLTVQPS----AEH------PSRTLEFDGVVVCAGVGSR-- 259 (410)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEE-EEEEEcC----CCC------ccceEecCEEEECCCcChH--
Confidence 4667888899999999999999999999998765 333 3444330 000 0247899999999999974
Q ss_pred HHHHHHcCC
Q 006539 289 EKLIKNFKL 297 (641)
Q Consensus 289 ~~l~~~~~~ 297 (641)
.+.+..+.
T Consensus 260 -~l~~~~~~ 267 (410)
T PRK12409 260 -ALAAMLGD 267 (410)
T ss_pred -HHHHHhCC
Confidence 34444443
No 80
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.35 E-value=1.3e-11 Score=130.43 Aligned_cols=171 Identities=26% Similarity=0.335 Sum_probs=108.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccc--cccccC------hHHH--------HHhhhh
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII--SGNVFE------PRAL--------NELLPQ 169 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~--~g~~i~------~~~l--------~~l~~~ 169 (641)
++|||+|||||+.|+++|+.|+++ .|+++|+|+||...++.+.. +.+.+. +..+ .+..-.
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~----~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~ 77 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEY----EPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFA 77 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHh----CCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHH
Confidence 479999999999999999999999 33499999999998765442 222221 2111 000111
Q ss_pred hhh-cCCCe------eeeccCcc------------------EEEeecCcccc-CCCC-------CCCCCcEEeeHHHHHH
Q 006539 170 WKQ-EEAPI------RVPVSSDK------------------FWFLTKDRAFS-LPSP-------FSNRGNYVISLSQLVR 216 (641)
Q Consensus 170 ~~~-~~~~~------~~~~~~~~------------------~~~~~~~~~~~-~~~~-------~~~~~~~~v~~~~l~~ 216 (641)
|.. ...++ ......+. +..++...-.. .|.. ..-....+++...+..
T Consensus 78 ~~kq~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~ 157 (429)
T COG0579 78 ICKQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTR 157 (429)
T ss_pred HHHHhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHH
Confidence 111 11111 11111111 11111100000 1111 1223456789999999
Q ss_pred HHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceE-EEcCEEEEcCCCCCchhHHHHHHc
Q 006539 217 WLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVE-LRGRITLLAEGCRGSLSEKLIKNF 295 (641)
Q Consensus 217 ~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~-i~a~~vV~A~G~~s~vr~~l~~~~ 295 (641)
.|.+.+.++|+++.++++|++++..++| +..+.+.+ |.+ ++|+.||.|.|.++ ..|++..
T Consensus 158 ~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~---------------g~~~~~ak~Vin~AGl~A---d~la~~~ 218 (429)
T COG0579 158 ALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSN---------------GEETLEAKFVINAAGLYA---DPLAQMA 218 (429)
T ss_pred HHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecC---------------CcEEEEeeEEEECCchhH---HHHHHHh
Confidence 9999999999999999999999998876 43455554 444 99999999999986 4777778
Q ss_pred CCCc
Q 006539 296 KLRE 299 (641)
Q Consensus 296 ~~~~ 299 (641)
++..
T Consensus 219 g~~~ 222 (429)
T COG0579 219 GIPE 222 (429)
T ss_pred CCCc
Confidence 8774
No 81
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.33 E-value=1.9e-12 Score=129.74 Aligned_cols=146 Identities=25% Similarity=0.360 Sum_probs=91.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCcc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (641)
.+|||+|||+||+|..||+.++|+ |++.+++||+..+|++|++.|||++++|......++..... .....+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQl------GlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~---~~~~rG 108 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQL------GLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHE---DFASRG 108 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHh------cceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhh---HHHhcC
Confidence 479999999999999999999999 99999999999999999999999999986554444332110 011111
Q ss_pred EEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccc
Q 006539 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (641)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~ 265 (641)
+... ...++++..+....+.+ ..|...+....++++|+++.|+.. +.+...| .|...| |+
T Consensus 109 i~vs--~~~~dl~~~~~~k~~~v---k~Lt~gi~~lfkknkV~~~kG~gs----f~~p~~V-~v~k~d------g~---- 168 (506)
T KOG1335|consen 109 IDVS--SVSLDLQAMMKAKDNAV---KQLTGGIENLFKKNKVTYVKGFGS----FLDPNKV-SVKKID------GE---- 168 (506)
T ss_pred cccc--ceecCHHHHHHHHHHHH---HHHhhHHHHHhhhcCeEEEeeeEe----ecCCceE-EEeccC------CC----
Confidence 1110 11112221111111111 222333333446678999888755 3332333 454433 33
Q ss_pred cccceEEEcCEEEEcCCC
Q 006539 266 FQRGVELRGRITLLAEGC 283 (641)
Q Consensus 266 ~~~g~~i~a~~vV~A~G~ 283 (641)
...+++|.+|+|||+
T Consensus 169 ---~~ii~aKnIiiATGS 183 (506)
T KOG1335|consen 169 ---DQIIKAKNIIIATGS 183 (506)
T ss_pred ---ceEEeeeeEEEEeCC
Confidence 278999999999995
No 82
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.32 E-value=5.1e-12 Score=135.73 Aligned_cols=143 Identities=26% Similarity=0.382 Sum_probs=91.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhh---hhhhcCCCeeeecc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLP---QWKQEEAPIRVPVS 182 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~---~~~~~~~~~~~~~~ 182 (641)
++||||||||||||.++|++++++ |.+|+|+|+...+||+|++-||+++++|..... .+.......
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~------G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~----- 71 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQL------GLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEY----- 71 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC------CCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhccccc-----
Confidence 579999999999999999999999 999999999988999999999999999865433 222211000
Q ss_pred CccEEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCc
Q 006539 183 SDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSK 262 (641)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~ 262 (641)
++.. ....++++..+..... + -..+...+....+++||+++.|+.. +.+++.+ .|...+
T Consensus 72 --Gi~~--~~~~id~~~~~~~k~~-v--~~~~~~~~~~l~~~~~V~vi~G~a~----f~~~~~v-~V~~~~--------- 130 (454)
T COG1249 72 --GISA--EVPKIDFEKLLARKDK-V--VRLLTGGVEGLLKKNGVDVIRGEAR----FVDPHTV-EVTGED--------- 130 (454)
T ss_pred --ceec--CCCCcCHHHHHHHHHH-H--HHHHhhhHHHHHhhCCCEEEEEEEE----ECCCCEE-EEcCCC---------
Confidence 0000 0001111111100001 0 1122223333345679999998765 4444433 343211
Q ss_pred ccccccceEEEcCEEEEcCCCCCc
Q 006539 263 KENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 263 ~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
..+++|+.+|+|||+++.
T Consensus 131 ------~~~~~a~~iiIATGS~p~ 148 (454)
T COG1249 131 ------KETITADNIIIATGSRPR 148 (454)
T ss_pred ------ceEEEeCEEEEcCCCCCc
Confidence 379999999999999975
No 83
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.31 E-value=2.4e-10 Score=122.39 Aligned_cols=61 Identities=20% Similarity=0.200 Sum_probs=50.0
Q ss_pred EeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 208 VISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 208 ~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
.++...+...+.+.+.+.|++++.+++|+++..+++ .+ .|++.+ | ++++|.||+|+|.++.
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~-~v~~~~---------------g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGD-GV-TVTTAD---------------G-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCC-eE-EEEeCC---------------C-EEEeeEEEEecCcchh
Confidence 467788888888888899999999999999988663 33 577655 4 7899999999999863
No 84
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.31 E-value=4.3e-10 Score=120.60 Aligned_cols=72 Identities=21% Similarity=0.195 Sum_probs=55.6
Q ss_pred cEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCC
Q 006539 206 NYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (641)
Q Consensus 206 ~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s 285 (641)
...++...+.+.|.+.+++.|++++.+++|+++..++ +.+ .|.+.+ .++.+|.||+|+|.++
T Consensus 139 ~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~-~~~-~v~~~~----------------~~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 139 GGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTE-LLV-TVKTTK----------------GSYQANKLVVTAGAWT 200 (380)
T ss_pred CcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecC-CeE-EEEeCC----------------CEEEeCEEEEecCcch
Confidence 4567888999999999999999999999999998765 334 466654 3789999999999985
Q ss_pred chhHHHHHHcCCC
Q 006539 286 SLSEKLIKNFKLR 298 (641)
Q Consensus 286 ~vr~~l~~~~~~~ 298 (641)
. .+.+..++.
T Consensus 201 ~---~l~~~~g~~ 210 (380)
T TIGR01377 201 S---KLLSPLGIE 210 (380)
T ss_pred H---HHhhhcccC
Confidence 3 344444543
No 85
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.30 E-value=2e-12 Score=140.25 Aligned_cols=141 Identities=25% Similarity=0.361 Sum_probs=39.2
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChH-------HHHHhhhhhhhcCCCeeeec
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPR-------ALNELLPQWKQEEAPIRVPV 181 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~-------~l~~l~~~~~~~~~~~~~~~ 181 (641)
|||||||||||++||+.+++. |++|+||||.+.+|+...+++..... ....+..++........ ..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~------G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~-~~ 73 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARA------GAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARG-GY 73 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHT------TS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------
T ss_pred CEEEECccHHHHHHHHHHHHC------CCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhc-cc
Confidence 899999999999999999999 99999999999999977666543211 11222222222100000 00
Q ss_pred cCccEEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCC
Q 006539 182 SSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (641)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~ 261 (641)
..+........+.+++..+...|.+.+.+.|++|++++.|.++..++ ++|++|.+.+ ++|
T Consensus 74 --------------~~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~-~~i~~V~~~~----~~g- 133 (428)
T PF12831_consen 74 --------------PQEDRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDG-GRITGVIVET----KSG- 133 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc----ccc-
Confidence 00000000001345666777778888888999999999999999876 6788998875 233
Q ss_pred cccccccceEEEcCEEEEcCCC
Q 006539 262 KKENFQRGVELRGRITLLAEGC 283 (641)
Q Consensus 262 ~~~~~~~g~~i~a~~vV~A~G~ 283 (641)
..+++||.+|+|||-
T Consensus 134 -------~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 134 -------RKEIRAKVFIDATGD 148 (428)
T ss_dssp ----------------------
T ss_pred -------ccccccccccccccc
Confidence 278999999999994
No 86
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.30 E-value=8.4e-10 Score=123.39 Aligned_cols=172 Identities=17% Similarity=0.239 Sum_probs=102.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCC-ccccccccCh--H-------H----HH--Hhhhh
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA-HIISGNVFEP--R-------A----LN--ELLPQ 169 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~-~~~~g~~i~~--~-------~----l~--~l~~~ 169 (641)
++|||||||||+.|+++|+.|+++ |++|+||||.....+ +..+.+.+.+ + . +. +++..
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~r------G~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~ 78 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALR------GLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKR 78 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHc------CCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999 999999999764332 2233333321 0 0 00 11111
Q ss_pred hhhc----CCCeeeeccCcc-----------------EEEeecCccc-cCCCC-------CCCCCcEEeeHHHHHHHHHH
Q 006539 170 WKQE----EAPIRVPVSSDK-----------------FWFLTKDRAF-SLPSP-------FSNRGNYVISLSQLVRWLGG 220 (641)
Q Consensus 170 ~~~~----~~~~~~~~~~~~-----------------~~~~~~~~~~-~~~~~-------~~~~~~~~v~~~~l~~~L~~ 220 (641)
+... ...+......+. ..+++..... ..|.. +... ...++...+...+..
T Consensus 79 ~a~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~-dg~vdp~rl~~al~~ 157 (546)
T PRK11101 79 IARHCVEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVP-DGTVDPFRLTAANML 157 (546)
T ss_pred hchHhhcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEec-CcEECHHHHHHHHHH
Confidence 1110 000000001010 0111100000 01110 0011 235788999999999
Q ss_pred HHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCC
Q 006539 221 KAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (641)
Q Consensus 221 ~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~ 298 (641)
.+.++|++++++++|+++..++ +++++|++.+. .+|+ +.+|+||.||.|+|.|+ .++.+..+++
T Consensus 158 ~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~d~---~~g~-------~~~i~A~~VVnAaG~wa---~~l~~~~g~~ 221 (546)
T PRK11101 158 DAKEHGAQILTYHEVTGLIREG-DTVCGVRVRDH---LTGE-------TQEIHAPVVVNAAGIWG---QHIAEYADLR 221 (546)
T ss_pred HHHhCCCEEEeccEEEEEEEcC-CeEEEEEEEEc---CCCc-------EEEEECCEEEECCChhH---HHHHHhcCCC
Confidence 9999999999999999998765 56778876441 1121 25799999999999996 4555545543
No 87
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.30 E-value=2.8e-10 Score=122.60 Aligned_cols=167 Identities=22% Similarity=0.267 Sum_probs=100.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCC--ccccccccC------hHHH-H-------Hhhhhh
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA--HIISGNVFE------PRAL-N-------ELLPQW 170 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~--~~~~g~~i~------~~~l-~-------~l~~~~ 170 (641)
.+||+|||||++|+++|+.|+++ .+|++|+|+||...++. +..+++.+. +..+ . ++++.|
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~----~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 77 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQER----YPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAF 77 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHh----CCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999986 45899999999865433 222333322 1111 1 112222
Q ss_pred hhc-CCCee------eeccC-----------------ccEEEeecCc-cccCCC-----CCCCCCcEEeeHHHHHHHHHH
Q 006539 171 KQE-EAPIR------VPVSS-----------------DKFWFLTKDR-AFSLPS-----PFSNRGNYVISLSQLVRWLGG 220 (641)
Q Consensus 171 ~~~-~~~~~------~~~~~-----------------~~~~~~~~~~-~~~~~~-----~~~~~~~~~v~~~~l~~~L~~ 220 (641)
... ..+.. ..... ..+.+++... .-..|. .........++...+.+.|.+
T Consensus 78 ~~~~~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~ 157 (393)
T PRK11728 78 CDQHGIPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAE 157 (393)
T ss_pred HHHcCCCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHH
Confidence 211 11110 00000 0011111000 000111 011223456788999999999
Q ss_pred HHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCC
Q 006539 221 KAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (641)
Q Consensus 221 ~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~ 298 (641)
.+++.|++++++++|+++..+++ .+ .|.+.+ | ++++|.||+|+|.++. .+.+.+++.
T Consensus 158 ~~~~~Gv~i~~~~~V~~i~~~~~-~~-~V~~~~---------------g-~i~ad~vV~A~G~~s~---~l~~~~g~~ 214 (393)
T PRK11728 158 LIQARGGEIRLGAEVTALDEHAN-GV-VVRTTQ---------------G-EYEARTLINCAGLMSD---RLAKMAGLE 214 (393)
T ss_pred HHHhCCCEEEcCCEEEEEEecCC-eE-EEEECC---------------C-EEEeCEEEECCCcchH---HHHHHhCCC
Confidence 99999999999999999987653 33 576654 3 7899999999999973 444455654
No 88
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.29 E-value=3e-10 Score=130.27 Aligned_cols=156 Identities=19% Similarity=0.138 Sum_probs=94.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCC--CCccccccccChH------HHH--------Hhhhhh
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV--GAHIISGNVFEPR------ALN--------ELLPQW 170 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~--g~~~~~g~~i~~~------~l~--------~l~~~~ 170 (641)
++||+|||||++|+++|+.|+++ |++|+|+|+...+ |+...++|.+.+. .+. .....|
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~------G~~V~VlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~a~~~a~~~~ 333 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARR------GWQVTLYEADEAPAQGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFY 333 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHC------CCeEEEEecCCCccccCCcCcccccccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999 9999999998644 3333444544321 001 111222
Q ss_pred hhcC-CCeeeeccCccEEEe-ecC-------------cc---cc----------CCCC-----CCCCCcEEeeHHHHHHH
Q 006539 171 KQEE-APIRVPVSSDKFWFL-TKD-------------RA---FS----------LPSP-----FSNRGNYVISLSQLVRW 217 (641)
Q Consensus 171 ~~~~-~~~~~~~~~~~~~~~-~~~-------------~~---~~----------~~~~-----~~~~~~~~v~~~~l~~~ 217 (641)
.... ..........+...+ ... .. .. .+.. ........++...+.+.
T Consensus 334 ~~l~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~g~~~p~~G~v~p~~l~~a 413 (662)
T PRK01747 334 DALPAAGVAFDHDWCGVLQLAWDEKSAEKIAKMLALGLPAELARALDAEEAEELAGLPVPCGGIFYPQGGWLCPAELCRA 413 (662)
T ss_pred HHHHhcCCCCCCCCCceEEeecCchHHHHHHHHHhccCchHhhhhCCHHHHHHHhCCCCCCCcEEeCCCCeeCHHHHHHH
Confidence 2211 000000010011000 000 00 00 0100 11112334678899999
Q ss_pred HHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 218 LGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 218 L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
|.+.+++ |+++++++.|+++..++ +.+ .|.+.+ |..+++|.||+|+|.++.
T Consensus 414 L~~~a~~-Gv~i~~~~~V~~i~~~~-~~~-~v~t~~---------------g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 414 LLALAGQ-QLTIHFGHEVARLERED-DGW-QLDFAG---------------GTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHHhccc-CcEEEeCCEeeEEEEeC-CEE-EEEECC---------------CcEEECCEEEECCCCCcc
Confidence 9999988 99999999999998766 334 466654 556789999999999974
No 89
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.27 E-value=1.3e-10 Score=131.42 Aligned_cols=167 Identities=20% Similarity=0.259 Sum_probs=97.0
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc-ccccccC-------hHHHHHhhhhhhhcCC
Q 006539 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE-------PRALNELLPQWKQEEA 175 (641)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i~-------~~~l~~l~~~~~~~~~ 175 (641)
..+++||||||+|.|||+||+.+++. |++|+||||....++++ .+.+.|. ....+..+.+......
T Consensus 47 ~~~~~DVlVIG~G~AGl~AAl~Aae~------G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~ 120 (635)
T PLN00128 47 VDHTYDAVVVGAGGAGLRAAIGLSEH------GFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSD 120 (635)
T ss_pred eeeecCEEEECccHHHHHHHHHHHhc------CCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhC
Confidence 34579999999999999999999998 99999999997665543 2222221 1111111111100000
Q ss_pred ----C--eeeec--cCccEEEeecCccccCCCC------CCCCCc---------------EE--eeHHHHHHHHHHHHHH
Q 006539 176 ----P--IRVPV--SSDKFWFLTKDRAFSLPSP------FSNRGN---------------YV--ISLSQLVRWLGGKAEE 224 (641)
Q Consensus 176 ----~--~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~---------------~~--v~~~~l~~~L~~~a~~ 224 (641)
+ +...+ ..+.+.++.. .++.|... ....++ +. .....+.+.|.+.+.+
T Consensus 121 ~~~d~~lv~~l~~~s~~~i~~L~~-~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~ 199 (635)
T PLN00128 121 WLGDQDAIQYMCREAPKAVIELEN-YGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMK 199 (635)
T ss_pred CCCCHHHHHHHHHhHHHHHHHHHh-CCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHh
Confidence 0 00000 0000001100 00111000 000000 00 1245788889998988
Q ss_pred cCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCch
Q 006539 225 LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 225 ~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~v 287 (641)
.||+|+.++.++++..++++++.||...+ .++|+. ..+.||.||+|||..+.+
T Consensus 200 ~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 200 HNTQFFVEYFALDLIMDSDGACQGVIALN---MEDGTL-------HRFRAHSTILATGGYGRA 252 (635)
T ss_pred CCCEEEEeeEEEEEEEcCCCEEEEEEEEE---cCCCeE-------EEEEcCeEEECCCCCccc
Confidence 99999999999999887557888987643 123332 578999999999998853
No 90
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.26 E-value=7.5e-11 Score=130.74 Aligned_cols=173 Identities=19% Similarity=0.244 Sum_probs=100.4
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc-ccccccC---hHH---------HHHhhhhh
Q 006539 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE---PRA---------LNELLPQW 170 (641)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i~---~~~---------l~~l~~~~ 170 (641)
...++||||||+|.||++||+.+++. |++|+||||.+..|++. .+++.+. .+. ..+++.++
T Consensus 58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~------Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~ 131 (506)
T PRK06481 58 LKDKYDIVIVGAGGAGMSAAIEAKDA------GMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEET 131 (506)
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHC------CCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHH
Confidence 34589999999999999999999999 99999999998887654 2333221 110 11222222
Q ss_pred hhcCC----C--eeee--ccCccEEEeecCccccCC-----CCC-----CCCCcEEeeHHHHHHHHHHHHHHcCCEEecC
Q 006539 171 KQEEA----P--IRVP--VSSDKFWFLTKDRAFSLP-----SPF-----SNRGNYVISLSQLVRWLGGKAEELGVEIYPG 232 (641)
Q Consensus 171 ~~~~~----~--~~~~--~~~~~~~~~~~~~~~~~~-----~~~-----~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g 232 (641)
..... + +... ...+.+.|+.. ..+.+. ... ............+.+.|.+.+++.|++++++
T Consensus 132 ~~~~~~~~d~~l~~~~~~~s~~~i~wl~~-~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~ 210 (506)
T PRK06481 132 LKGGGGTNDKALLRYFVDNSASAIDWLDS-MGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVN 210 (506)
T ss_pred HHhcCCCCCHHHHHHHHhccHHHHHHHHH-cCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeC
Confidence 11000 0 0000 00001111110 000000 000 0000000123467888889999999999999
Q ss_pred ceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcC
Q 006539 233 FAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFK 296 (641)
Q Consensus 233 ~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~ 296 (641)
+.|+++..++ ++|++|.+.. .+|+ ..++.+|.||+|+|.++... .+.+.+.
T Consensus 211 t~v~~l~~~~-g~V~Gv~~~~----~~g~-------~~~i~a~~VVlAtGG~~~n~-~m~~~~~ 261 (506)
T PRK06481 211 ADVTKITEKD-GKVTGVKVKI----NGKE-------TKTISSKAVVVTTGGFGANK-DMIAKYR 261 (506)
T ss_pred CeeEEEEecC-CEEEEEEEEe----CCCe-------EEEEecCeEEEeCCCcccCH-HHHHHhC
Confidence 9999998754 7787887643 1222 15789999999999988743 3444443
No 91
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.26 E-value=6.4e-11 Score=128.67 Aligned_cols=161 Identities=25% Similarity=0.336 Sum_probs=91.4
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc-ccccccC------------hHHHHHhhhhhhhcCC
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE------------PRALNELLPQWKQEEA 175 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i~------------~~~l~~l~~~~~~~~~ 175 (641)
||||||+|+|||+||+.|++. |.+|+||||.+..|++. .+++.+. .....+.+.++.....
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~------G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 74 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEA------GAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGG 74 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHT------TT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTT
T ss_pred CEEEECCCHHHHHHHHHHhhh------cCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccc
Confidence 899999999999999999999 99999999999876643 2222211 0111111211111100
Q ss_pred Ce-e---------------eeccCccEEEee-cCcccc---CC----C------CCCCCCcEEeeHHHHHHHHHHHHHHc
Q 006539 176 PI-R---------------VPVSSDKFWFLT-KDRAFS---LP----S------PFSNRGNYVISLSQLVRWLGGKAEEL 225 (641)
Q Consensus 176 ~~-~---------------~~~~~~~~~~~~-~~~~~~---~~----~------~~~~~~~~~v~~~~l~~~L~~~a~~~ 225 (641)
.. . .......+.+.. ....+. +. . ..............+.+.|.+.+++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 154 (417)
T PF00890_consen 75 GLNDPDLVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEA 154 (417)
T ss_dssp T-S-HHHHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhc
Confidence 00 0 000000111111 000000 00 0 00000011234678889999999999
Q ss_pred CCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 226 GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 226 Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
|++|++++.++++..++ ++|++|...+ ..+|+. .+++|+.||+|+|..+.
T Consensus 155 gv~i~~~~~~~~Li~e~-g~V~Gv~~~~---~~~g~~-------~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 155 GVDIRFNTRVTDLITED-GRVTGVVAEN---PADGEF-------VRIKAKAVILATGGFGG 204 (417)
T ss_dssp TEEEEESEEEEEEEEET-TEEEEEEEEE---TTTCEE-------EEEEESEEEE----BGG
T ss_pred CeeeeccceeeeEEEeC-CceeEEEEEE---CCCCeE-------EEEeeeEEEeccCcccc
Confidence 99999999999999975 7899999873 123332 57899999999999986
No 92
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.26 E-value=3.6e-11 Score=131.39 Aligned_cols=168 Identities=24% Similarity=0.311 Sum_probs=100.2
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCC-CcEEEEcCCCCCCCcc-ccccccC---hH---------HHHHhhhhhhhcC
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVD-LSVCVVEKGAEVGAHI-ISGNVFE---PR---------ALNELLPQWKQEE 174 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G-~~V~viEk~~~~g~~~-~~g~~i~---~~---------~l~~l~~~~~~~~ 174 (641)
||||||||.||++||+.|++. | .+|+||||.+..|+.. .+++.+. .+ ...+++..+....
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~------G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 74 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKA------GAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGG 74 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHc------CCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhc
Confidence 899999999999999999998 9 9999999998877654 3343331 11 1111222221100
Q ss_pred CC------eeee--ccCccEEEeecCccccC-----------CCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceE
Q 006539 175 AP------IRVP--VSSDKFWFLTKDRAFSL-----------PSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAA 235 (641)
Q Consensus 175 ~~------~~~~--~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v 235 (641)
.. .... ...+.+.|+.....+.. +..... .........+.+.|.+.+++.|+++++++.|
T Consensus 75 ~~~~~~~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v 153 (439)
T TIGR01813 75 RGINDPELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRP-TGGAGSGAEIVQKLYKKAKKEGIDTRLNSKV 153 (439)
T ss_pred CCCCCHHHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccC-CCCCCCHHHHHHHHHHHHHHcCCEEEeCCEe
Confidence 00 0000 00001111110111110 000000 0011234578889999999999999999999
Q ss_pred EEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHc
Q 006539 236 SEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNF 295 (641)
Q Consensus 236 ~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~ 295 (641)
++++.++++++++|.+.+ .+|+. ..+.+|.||+|+|.++. ..++.+.+
T Consensus 154 ~~l~~~~~g~v~Gv~~~~----~~g~~-------~~~~a~~VVlAtGg~~~-n~~m~~~~ 201 (439)
T TIGR01813 154 EDLIQDDQGTVVGVVVKG----KGKGI-------YIKAAKAVVLATGGFGS-NKEMIAKY 201 (439)
T ss_pred eEeEECCCCcEEEEEEEe----CCCeE-------EEEecceEEEecCCCCC-CHHHHHHh
Confidence 999987667888887653 12211 35789999999999987 34555554
No 93
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.26 E-value=1.3e-10 Score=127.95 Aligned_cols=195 Identities=22% Similarity=0.243 Sum_probs=107.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCC--CCCcc-ccccc--cCh---------HHHHHhhhhhh
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE--VGAHI-ISGNV--FEP---------RALNELLPQWK 171 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~--~g~~~-~~g~~--i~~---------~~l~~l~~~~~ 171 (641)
.++||||||+|++||++|+.|++. |.+|+||||.+. .|+.. .+++. ... ....+++.++.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~------G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREA------GASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLL 76 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHH
Confidence 468999999999999999999999 999999999874 44433 33331 000 01112222221
Q ss_pred hcCCC------eeee--ccCccEEEeecCccccCCC----CC-CCCCc--EEeeHHHHHHHHHHHHHHcCCEEecCceEE
Q 006539 172 QEEAP------IRVP--VSSDKFWFLTKDRAFSLPS----PF-SNRGN--YVISLSQLVRWLGGKAEELGVEIYPGFAAS 236 (641)
Q Consensus 172 ~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~----~~-~~~~~--~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~ 236 (641)
..... .... ...+.+.++.. ..+.+.. .. ..... +.-....+...|.+.+++.|++++++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~s~~~~~wl~~-~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~ 155 (466)
T PRK08274 77 RVTGGRTDEALARLLIRESSDCRDWMRK-HGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVT 155 (466)
T ss_pred HhhCCCCCHHHHHHHHHcCHHHHHHHHh-CCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 11000 0000 00000111110 0010000 00 00000 111145788889999999999999999999
Q ss_pred EEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcc---cccCccceeeEEE
Q 006539 237 EILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREK---SHAQHQTYALGIK 313 (641)
Q Consensus 237 ~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~---~~~~~~~~~~g~~ 313 (641)
++..++ ++|++|.+.+ .+|+ ...+++|.||+|+|..+..+..+.+.++.... ....+...|.|++
T Consensus 156 ~l~~~~-g~v~gv~~~~----~~g~-------~~~i~a~~VIlAtGg~~~n~~~~~~~~~~~~~~~~~~~~~~~tGdG~~ 223 (466)
T PRK08274 156 ALELDD-GRFVGARAGS----AAGG-------AERIRAKAVVLAAGGFESNREWLREAWGQPADNFLVRGTPYNQGDLLK 223 (466)
T ss_pred EEEecC-CeEEEEEEEc----cCCc-------eEEEECCEEEECCCCCCCCHHHHHhhcCCchhhceecCCCCcccHHHH
Confidence 998764 7788887742 2232 25789999999999988755444333332100 0123344566655
Q ss_pred EEEeec
Q 006539 314 EVWEID 319 (641)
Q Consensus 314 ~~~~~~ 319 (641)
..+.+.
T Consensus 224 ma~~~G 229 (466)
T PRK08274 224 ALLDAG 229 (466)
T ss_pred HHHHcC
Confidence 444433
No 94
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.25 E-value=5e-11 Score=131.00 Aligned_cols=149 Identities=17% Similarity=0.292 Sum_probs=90.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCC-CCCCccc--cccccChHHHHHhhhhhhhcCCCeeeecc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA-EVGAHII--SGNVFEPRALNELLPQWKQEEAPIRVPVS 182 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~-~~g~~~~--~g~~i~~~~l~~l~~~~~~~~~~~~~~~~ 182 (641)
.+|||||||||+||+.||+.+++. |.+|+|||+.. .+|.... +-+.+....+.+-+..+ +.......+
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~------G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidal---Gg~~g~~~d 73 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARM------GAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDAL---GGEMGKAID 73 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHc------CCcEEEEecccccccccCCccccccchhhHHHHHHHhc---CCHHHHHHh
Confidence 469999999999999999999999 99999999884 4443110 11112222211111111 100000000
Q ss_pred Cc--cEEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeCccccccC
Q 006539 183 SD--KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (641)
Q Consensus 183 ~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~ 259 (641)
.. .+..+....+ |. . ......+++..+.+.|.+.+++. |++++ ...|+++..++ +.+.+|.+.+
T Consensus 74 ~~giq~r~ln~skG---pA-V-~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~-grV~GV~t~d------ 140 (618)
T PRK05192 74 KTGIQFRMLNTSKG---PA-V-RALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVEN-GRVVGVVTQD------ 140 (618)
T ss_pred hccCceeecccCCC---Cc-e-eCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecC-CEEEEEEECC------
Confidence 00 1111111000 00 0 00112477888889998888765 79986 45688887765 6788899876
Q ss_pred CCcccccccceEEEcCEEEEcCCCCC
Q 006539 260 GSKKENFQRGVELRGRITLLAEGCRG 285 (641)
Q Consensus 260 g~~~~~~~~g~~i~a~~vV~A~G~~s 285 (641)
|..+.|+.||+|||.++
T Consensus 141 ---------G~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 141 ---------GLEFRAKAVVLTTGTFL 157 (618)
T ss_pred ---------CCEEECCEEEEeeCcch
Confidence 67899999999999764
No 95
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.24 E-value=2e-10 Score=129.80 Aligned_cols=166 Identities=20% Similarity=0.250 Sum_probs=96.8
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc-ccccccC-------hHHHHHhhhhh-----
Q 006539 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE-------PRALNELLPQW----- 170 (641)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i~-------~~~l~~l~~~~----- 170 (641)
...++||||||||.|||+||+.+++. |++|+||||....++++ .+.+.+. ....+..+.+.
T Consensus 26 ~~~~~DVlVIG~G~AGl~AAi~Aa~~------G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~ 99 (617)
T PTZ00139 26 IDHTYDAVVVGAGGAGLRAALGLVEL------GYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSD 99 (617)
T ss_pred cccccCEEEECccHHHHHHHHHHHHc------CCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhC
Confidence 34579999999999999999999998 99999999998765543 2222221 11111111110
Q ss_pred ----------------------hhcCCCeeeeccCccEEE-eecCccccCCCC-CCCCCcEEe--eHHHHHHHHHHHHHH
Q 006539 171 ----------------------KQEEAPIRVPVSSDKFWF-LTKDRAFSLPSP-FSNRGNYVI--SLSQLVRWLGGKAEE 224 (641)
Q Consensus 171 ----------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~v--~~~~l~~~L~~~a~~ 224 (641)
...+.++...... .+.. ........+... ...+..+.. ....+...|.+++++
T Consensus 100 ~~~d~~lv~~l~~~s~~~i~~L~~~Gv~f~~~~~g-~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~ 178 (617)
T PTZ00139 100 WLGDQDAIQYMCREAPQAVLELESYGLPFSRTKDG-KIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLK 178 (617)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcCCceEeCCCC-cEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHh
Confidence 1111111110000 0000 000000000000 000000011 235788899999999
Q ss_pred cCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 225 LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 225 ~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
.||+++.++.++++..+++|+|.||...+ .++|+. ..+.|+.||+|||..+.
T Consensus 179 ~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 179 YDCNFFIEYFALDLIMDEDGECRGVIAMS---MEDGSI-------HRFRAHYTVIATGGYGR 230 (617)
T ss_pred CCCEEEeceEEEEEEECCCCEEEEEEEEE---CCCCeE-------EEEECCcEEEeCCCCcc
Confidence 99999999999999885568888987533 123332 57899999999999875
No 96
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.24 E-value=4.9e-09 Score=118.66 Aligned_cols=76 Identities=16% Similarity=0.171 Sum_probs=57.5
Q ss_pred EeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcC-CCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 208 VISLSQLVRWLGGKAEELGVEIYPGFAASEILYDA-DNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 208 ~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~-~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
.++...+...|.+.+++.|++++.++.|+++..++ ++.+++|++.+. .+|+ ..++++|.||+|+|.|+.
T Consensus 228 ~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~---~tg~-------~~~i~a~~VVnAaGaws~ 297 (627)
T PLN02464 228 QMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDN---LTGK-------EFDVYAKVVVNAAGPFCD 297 (627)
T ss_pred EEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEEC---CCCc-------EEEEEeCEEEECCCHhHH
Confidence 46889999999999999999999999999998764 466777776431 1111 137899999999999974
Q ss_pred hhHHHHHHcC
Q 006539 287 LSEKLIKNFK 296 (641)
Q Consensus 287 vr~~l~~~~~ 296 (641)
.+.+..+
T Consensus 298 ---~l~~~~g 304 (627)
T PLN02464 298 ---EVRKMAD 304 (627)
T ss_pred ---HHHHhcc
Confidence 4444443
No 97
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.23 E-value=8.4e-11 Score=129.31 Aligned_cols=142 Identities=24% Similarity=0.343 Sum_probs=87.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccE
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (641)
+|||+||||||||+++|..|+++ |++|+|||+.+.+|++|++-+|++.+.|.+....+...... ...++
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~------G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~-----~~~g~ 72 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADL------GLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKAL-----AEHGI 72 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhh-----hhcCc
Confidence 69999999999999999999999 99999999987899999999999998876543332221000 00000
Q ss_pred EEeecCccccCCCCCCCCCcEEeeHH----HHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCc
Q 006539 187 WFLTKDRAFSLPSPFSNRGNYVISLS----QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSK 262 (641)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~----~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~ 262 (641)
.+ ....+++.. ..-.+. .+...+.+.+++.||+++.++.. +.+...+ .|...+ |+
T Consensus 73 ~~--~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~----~~~~~~v-~v~~~~------g~- 131 (471)
T PRK06467 73 VF--GEPKIDIDK-------MRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGK----FTGGNTL-EVTGED------GK- 131 (471)
T ss_pred cc--CCCCcCHHH-------HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE----EccCCEE-EEecCC------Cc-
Confidence 00 000011110 000011 12222334456679999988643 2232333 455433 11
Q ss_pred ccccccceEEEcCEEEEcCCCCCc
Q 006539 263 KENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 263 ~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
..++++|.||+|||+++.
T Consensus 132 ------~~~~~~d~lViATGs~p~ 149 (471)
T PRK06467 132 ------TTVIEFDNAIIAAGSRPI 149 (471)
T ss_pred ------eEEEEcCEEEEeCCCCCC
Confidence 157899999999998764
No 98
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.23 E-value=1.8e-10 Score=129.52 Aligned_cols=165 Identities=20% Similarity=0.263 Sum_probs=95.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc-ccccccC-------hHHHHHhhhhhhhcCCC-
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE-------PRALNELLPQWKQEEAP- 176 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i~-------~~~l~~l~~~~~~~~~~- 176 (641)
.++||||||+|.|||+||+.+++. |++|+|+||....++++ .+++.+. ....+..+.++......
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~------G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~ 79 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQS------GQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYI 79 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHc------CCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCC
Confidence 478999999999999999999998 99999999997655433 2222221 11111111111000000
Q ss_pred -----eeee--ccCccEEEeecCccccCCC---------CCC-----------CCCcEEe--eHHHHHHHHHHHHHHcCC
Q 006539 177 -----IRVP--VSSDKFWFLTKDRAFSLPS---------PFS-----------NRGNYVI--SLSQLVRWLGGKAEELGV 227 (641)
Q Consensus 177 -----~~~~--~~~~~~~~~~~~~~~~~~~---------~~~-----------~~~~~~v--~~~~l~~~L~~~a~~~Gv 227 (641)
+... ...+.+.++. ..++.+.. ... .+..+.. ....+...|.+++.+.||
T Consensus 80 ~d~~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi 158 (588)
T PRK08958 80 GDQDAIEYMCKTGPEAILELE-HMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHT 158 (588)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCC
Confidence 0000 0000000110 00011100 000 0000011 245788889888888999
Q ss_pred EEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCch
Q 006539 228 EIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 228 ~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~v 287 (641)
+++.++.++++..+++|+|+||...+ .++|+. ..+.|+.||+|||..+.+
T Consensus 159 ~i~~~~~~~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 159 TIFSEWYALDLVKNQDGAVVGCTAIC---IETGEV-------VYFKARATVLATGGAGRI 208 (588)
T ss_pred EEEeCcEEEEEEECCCCEEEEEEEEE---cCCCcE-------EEEEcCeEEECCCCcccc
Confidence 99999999999987668899997643 123332 578999999999999853
No 99
>PRK07121 hypothetical protein; Validated
Probab=99.23 E-value=2e-10 Score=127.33 Aligned_cols=72 Identities=25% Similarity=0.409 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEc-CEEEEcCCCCCchhH
Q 006539 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRG-RITLLAEGCRGSLSE 289 (641)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a-~~vV~A~G~~s~vr~ 289 (641)
...+.+.|.+.+++.|++|++++.++++..++++++++|...+ +|+ ...++| |.||+|+|..+. .+
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-----~~~-------~~~i~a~k~VVlAtGg~~~-N~ 242 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARR-----YGE-------TVAIRARKGVVLAAGGFAM-NR 242 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEe-----CCc-------EEEEEeCCEEEECCCCcCc-CH
Confidence 4568888999999999999999999999987667888888743 122 257889 999999999987 34
Q ss_pred HHHHHc
Q 006539 290 KLIKNF 295 (641)
Q Consensus 290 ~l~~~~ 295 (641)
+|.+.+
T Consensus 243 em~~~~ 248 (492)
T PRK07121 243 EMVARY 248 (492)
T ss_pred HHHHHh
Confidence 454444
No 100
>PRK08275 putative oxidoreductase; Provisional
Probab=99.23 E-value=1.1e-10 Score=130.97 Aligned_cols=170 Identities=22% Similarity=0.294 Sum_probs=95.4
Q ss_pred cccccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcccc-c-cccCh------HHHHHhhhhhhhcC
Q 006539 103 RESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIIS-G-NVFEP------RALNELLPQWKQEE 174 (641)
Q Consensus 103 ~~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~-g-~~i~~------~~l~~l~~~~~~~~ 174 (641)
.+.+++||||||||.|||+||+.+++. .+|.+|+||||....++...+ + +.+.. ......+.+.....
T Consensus 5 ~~~~~~DVlVIG~G~AGl~AAi~aa~~----g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~ 80 (554)
T PRK08275 5 TQEVETDILVIGGGTAGPMAAIKAKER----NPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIAN 80 (554)
T ss_pred ceeEecCEEEECcCHHHHHHHHHHHHh----CCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhc
Confidence 345679999999999999999999975 236899999999864332211 1 11110 01111111110000
Q ss_pred C----------------CeeeeccCccEEEee-cCccccCCCCCCCCCcEE---eeHHHHHHHHHHHHHHcCCEEecCce
Q 006539 175 A----------------PIRVPVSSDKFWFLT-KDRAFSLPSPFSNRGNYV---ISLSQLVRWLGGKAEELGVEIYPGFA 234 (641)
Q Consensus 175 ~----------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---v~~~~l~~~L~~~a~~~Gv~i~~g~~ 234 (641)
. .........++.+.. ....+.... ....+.+. -....+.+.|.+.+++.||+|++++.
T Consensus 81 ~~~~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~-~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~ 159 (554)
T PRK08275 81 DGIVDQKAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKK-VHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIM 159 (554)
T ss_pred CCCccHHHHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeec-ccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceE
Confidence 0 000000011111111 000000000 00001111 12346788899999999999999999
Q ss_pred EEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCch
Q 006539 235 ASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 235 v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~v 287 (641)
++++..++++++.||...+. .+|+. ..+.||.||+|+|..+.+
T Consensus 160 v~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 160 ATRLLTDADGRVAGALGFDC---RTGEF-------LVIRAKAVILCCGAAGRL 202 (554)
T ss_pred EEEEEEcCCCeEEEEEEEec---CCCcE-------EEEECCEEEECCCCcccc
Confidence 99998875578888875331 12221 468999999999998754
No 101
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.22 E-value=4.3e-09 Score=116.70 Aligned_cols=66 Identities=20% Similarity=0.152 Sum_probs=50.2
Q ss_pred eeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 209 ISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 209 v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
++...+...+.+.+.+.|++++.+++|+++..++ +. ++|++.+. .+|+ ..+++||.||+|+|.|+.
T Consensus 152 vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~-~~-~~v~~~~~---~~g~-------~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 152 VDDARLVVLNARDAAERGAEILTRTRVVSARREN-GL-WHVTLEDT---ATGK-------RYTVRARALVNAAGPWVK 217 (508)
T ss_pred cCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC-CE-EEEEEEEc---CCCC-------EEEEEcCEEEECCCccHH
Confidence 5678888888888999999999999999998765 33 35665430 1121 257999999999999973
No 102
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.22 E-value=5.6e-11 Score=129.92 Aligned_cols=141 Identities=18% Similarity=0.288 Sum_probs=86.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccE
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (641)
+|||+||||||||++||+.|++. |++|+|+||. .+||+|++-+|++++.+.+.......... ....++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~------G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~-----~~~~g~ 69 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEH------GAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHD-----AADYGF 69 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC------CCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhH-----HhhcCc
Confidence 69999999999999999999999 9999999995 58999999999999877543322211100 000000
Q ss_pred EEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccccc
Q 006539 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (641)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~ 266 (641)
... ....++++........ -...+.+.+...+.+.||+++.|+.+ ..+++. |.+.
T Consensus 70 ~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~gv~~~~g~~~----~~~~~~---v~v~-------------- 124 (450)
T TIGR01421 70 YQN-LENTFNWPELKEKRDA---YVDRLNGIYQKNLEKNKVDVIFGHAR----FTKDGT---VEVN-------------- 124 (450)
T ss_pred ccC-CcCccCHHHHHHHHHH---HHHHHHHHHHHHHHhCCCEEEEEEEE----EccCCE---EEEC--------------
Confidence 000 0000111100000000 01223344555667789999999765 223332 3332
Q ss_pred ccceEEEcCEEEEcCCCCCc
Q 006539 267 QRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (641)
|..+.+|.||+|+|+++.
T Consensus 125 --~~~~~~d~vIiAtGs~p~ 142 (450)
T TIGR01421 125 --GRDYTAPHILIATGGKPS 142 (450)
T ss_pred --CEEEEeCEEEEecCCCCC
Confidence 467999999999998864
No 103
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.22 E-value=3e-10 Score=127.93 Aligned_cols=66 Identities=24% Similarity=0.402 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCch
Q 006539 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~v 287 (641)
..+...|.+.+.+.|++++.++.++++..+++|++.||...+. ++|.. ..+.||.||+|+|..+.+
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEM---ETGDV-------YILEAKTTLFATGGAGRI 213 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEc---CCCeE-------EEEECCeEEECCCCcccc
Confidence 5688889998988999999999999999876678889876431 12221 478899999999998854
No 104
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.22 E-value=8.4e-10 Score=118.58 Aligned_cols=70 Identities=29% Similarity=0.402 Sum_probs=53.5
Q ss_pred cEEeeHHHHHHHHHHHHHHcC-CEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCC
Q 006539 206 NYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (641)
Q Consensus 206 ~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~ 284 (641)
...++...+.+.|.+.++++| ..+..++.+..+..+ . .+++|.+.+ | ++.|+.||+|+|.+
T Consensus 150 ~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~---------------g-~i~a~~vv~a~G~~ 211 (387)
T COG0665 150 GGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDG---------------G-TIEADKVVLAAGAW 211 (387)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCC---------------c-cEEeCEEEEcCchH
Confidence 345677899999999999999 566668888888776 2 456788876 4 49999999999999
Q ss_pred CchhHHHHHHcC
Q 006539 285 GSLSEKLIKNFK 296 (641)
Q Consensus 285 s~vr~~l~~~~~ 296 (641)
+. .+....+
T Consensus 212 ~~---~l~~~~~ 220 (387)
T COG0665 212 AG---ELAATLG 220 (387)
T ss_pred HH---HHHHhcC
Confidence 64 4444444
No 105
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.22 E-value=2.5e-10 Score=127.47 Aligned_cols=170 Identities=24% Similarity=0.223 Sum_probs=96.5
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc-ccccccC-----hHHHHHhhhhhhhcCCC-
Q 006539 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE-----PRALNELLPQWKQEEAP- 176 (641)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i~-----~~~l~~l~~~~~~~~~~- 176 (641)
..+++||||||+|.|||+||+.+++. |.+|+||||....+++. .+++.+. ....+..+.++......
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae~------G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~ 86 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARRA------GRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGL 86 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHHc------CCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCC
Confidence 34679999999999999999999998 99999999998765433 2222221 01111111111000000
Q ss_pred -----ee----------eeccCccEEEee-cCccccC-CCCCCCCC-cEE----eeHHHHHHHHHHHHHHcCCEEecCce
Q 006539 177 -----IR----------VPVSSDKFWFLT-KDRAFSL-PSPFSNRG-NYV----ISLSQLVRWLGGKAEELGVEIYPGFA 234 (641)
Q Consensus 177 -----~~----------~~~~~~~~~~~~-~~~~~~~-~~~~~~~~-~~~----v~~~~l~~~L~~~a~~~Gv~i~~g~~ 234 (641)
+. ......++.|.. ....+.. ........ .+. .....+.+.|.+++++.||+++.++.
T Consensus 87 ~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~ 166 (541)
T PRK07804 87 CDPDAVRSLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHAL 166 (541)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeE
Confidence 00 000000111100 0000000 00000000 000 12457888899999899999999999
Q ss_pred EEEEEEcCCCcEEEEEeCccccccCCCcccccccc-eEEEcCEEEEcCCCCCch
Q 006539 235 ASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRG-VELRGRITLLAEGCRGSL 287 (641)
Q Consensus 235 v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g-~~i~a~~vV~A~G~~s~v 287 (641)
++++..++++++.+|.+.+.. .+. .++ ..+.|+.||+|||..+.+
T Consensus 167 v~~Li~~~~g~v~Gv~~~~~~---~~~-----~~g~~~i~Ak~VIlATGG~~~~ 212 (541)
T PRK07804 167 ALDLLTDGTGAVAGVTLHVLG---EGS-----PDGVGAVHAPAVVLATGGLGQL 212 (541)
T ss_pred eeeeEEcCCCeEEEEEEEecc---CCC-----CCcEEEEEcCeEEECCCCCCCC
Confidence 999988766788888765210 000 012 578999999999998864
No 106
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.22 E-value=3.2e-10 Score=127.95 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
...+...|.+.+++.||+++.++.++++..+++|+|.||...+ .++|.. ..+.|+.||+|||..+.
T Consensus 148 G~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 148 GHAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWN---LDDGTL-------HRFRAHMVVLATGGYGR 213 (598)
T ss_pred HHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEE---CCCCcE-------EEEEcCEEEECCCCCcc
Confidence 3468888999998999999999999999987667888987632 122322 57899999999999875
No 107
>PTZ00058 glutathione reductase; Provisional
Probab=99.21 E-value=2.4e-11 Score=135.02 Aligned_cols=54 Identities=26% Similarity=0.487 Sum_probs=49.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHh
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l 166 (641)
++||||||||||||+++|+.|++. |.+|+||||. .+||+|++-||++.+.|.+.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~------G~~ValIEk~-~~GGtCln~GCiPsK~l~~~ 100 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARN------KAKVALVEKD-YLGGTCVNVGCVPKKIMFNA 100 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHc------CCeEEEEecc-cccccccccCCCCCchhhhh
Confidence 679999999999999999999999 9999999996 68999999999999987543
No 108
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.20 E-value=1e-10 Score=127.93 Aligned_cols=142 Identities=20% Similarity=0.254 Sum_probs=87.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccE
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (641)
+|||+||||||||++||+.|+++ |++|+|+|+. .+||+|.+.+|++.+.|.............. .+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~------G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~-------~~ 67 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH------GAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAA-------GY 67 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC------CCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhH-------hc
Confidence 69999999999999999999999 9999999995 6899999999999998754432222110000 00
Q ss_pred EEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccccc
Q 006539 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (641)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~ 266 (641)
.+......+++...+.... -....+.+.+.+.+++.||+++.+ ++..+. . ..+ .|. .+
T Consensus 68 g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~--~-~~v-~v~-~~------------- 125 (446)
T TIGR01424 68 GWTVGKARFDWKKLLQKKD---DEIARLSGLYKRLLANAGVELLEG-RARLVG--P-NTV-EVL-QD------------- 125 (446)
T ss_pred CcCCCCCCcCHHHHHHHHH---HHHHHHHHHHHHHHHhCCcEEEEE-EEEEec--C-CEE-EEe-cC-------------
Confidence 0000000111110000000 001234455666677789999887 343332 2 222 332 22
Q ss_pred ccceEEEcCEEEEcCCCCCc
Q 006539 267 QRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (641)
|.++++|.||+|+|+++.
T Consensus 126 --g~~~~~d~lIiATGs~p~ 143 (446)
T TIGR01424 126 --GTTYTAKKILIAVGGRPQ 143 (446)
T ss_pred --CeEEEcCEEEEecCCcCC
Confidence 468999999999998764
No 109
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.20 E-value=2.6e-11 Score=117.91 Aligned_cols=137 Identities=28% Similarity=0.326 Sum_probs=79.7
Q ss_pred EEECCCHHHHHHHHHHHhhchhcCCCCc-EEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEEEe
Q 006539 111 VIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWFL 189 (641)
Q Consensus 111 vIVGgG~aGl~aA~~La~~~~~~~~G~~-V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 189 (641)
+||||||+||++|+.|.+. |++ |+|||++..+|+....-. .......+... .....+..+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~------g~~~v~v~e~~~~~Gg~w~~~~------------~~~~~~~~~~~-~~~~~~~~~ 61 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER------GIDPVVVLERNDRPGGVWRRYY------------SYTRLHSPSFF-SSDFGLPDF 61 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT------T---EEEEESSSSSTTHHHCH-------------TTTT-BSSSCC-TGGSS--CC
T ss_pred CEECcCHHHHHHHHHHHhC------CCCcEEEEeCCCCCCCeeEEeC------------CCCccccCccc-cccccCCcc
Confidence 6999999999999999999 999 999999998887542100 00000000000 000000000
Q ss_pred ecCccccCC-CCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccccccc
Q 006539 190 TKDRAFSLP-SPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQR 268 (641)
Q Consensus 190 ~~~~~~~~~-~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~ 268 (641)
..+... .+..........+.++.++|.+.+++.+++++++++|+++..++++ +.|++.+
T Consensus 62 ---~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~--------------- 121 (203)
T PF13738_consen 62 ---ESFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRD--------------- 121 (203)
T ss_dssp ---CHSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETT---------------
T ss_pred ---cccccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEe---------------
Confidence 000000 0000001122678899999999999999999999999999999866 4688876
Q ss_pred ceEEEcCEEEEcCCCCCc
Q 006539 269 GVELRGRITLLAEGCRGS 286 (641)
Q Consensus 269 g~~i~a~~vV~A~G~~s~ 286 (641)
+.+++||.||+|+|..+.
T Consensus 122 ~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 122 GRTIRADRVVLATGHYSH 139 (203)
T ss_dssp S-EEEEEEEEE---SSCS
T ss_pred cceeeeeeEEEeeeccCC
Confidence 568999999999997654
No 110
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.19 E-value=1.2e-10 Score=127.89 Aligned_cols=55 Identities=40% Similarity=0.617 Sum_probs=50.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhh
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELL 167 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~ 167 (641)
+|||+||||||||++||+.|++. |++|+|||+...+||.|++-+|++.+.|....
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~------G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~ 57 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQL------GLKVACVEGRSTLGGTCLNVGCMPSKALLHAS 57 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhC------CCeEEEEecCCceeeeeccCcccccHHHHHHh
Confidence 59999999999999999999999 99999999877899999999999999875543
No 111
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.19 E-value=1.5e-10 Score=127.57 Aligned_cols=53 Identities=42% Similarity=0.688 Sum_probs=49.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHh
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l 166 (641)
.|||+||||||||+++|+.|+++ |++|+|||+. .+||+|++-+|++.+.+.+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~------G~~v~lie~~-~~GG~c~~~gciPsk~l~~~ 56 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQL------GLKTALVEKG-KLGGTCLHKGCIPSKALLHS 56 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhC------CCeEEEEEcc-CCCcceEcCCcCchHHHHHH
Confidence 69999999999999999999999 9999999996 68999999999999887554
No 112
>PLN02546 glutathione reductase
Probab=99.18 E-value=3.4e-10 Score=125.89 Aligned_cols=143 Identities=19% Similarity=0.228 Sum_probs=88.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcC---------CCCCCCccccccccChHHHHHhhhhhhhcCCC
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEK---------GAEVGAHIISGNVFEPRALNELLPQWKQEEAP 176 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk---------~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~ 176 (641)
.+|||+||||||+|+.+|+.|+++ |++|+|+|+ ...+||+|++-||++.+.|.............
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~------G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~ 151 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNF------GASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEES 151 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC------CCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhh
Confidence 469999999999999999999999 999999996 24589999999999999986532222111000
Q ss_pred eeeeccCccEEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCcccc
Q 006539 177 IRVPVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (641)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~ 256 (641)
. ..++.. .....+++...+.... -....+..++.+.+++.||+++.|... .+ +. .. |.+ +
T Consensus 152 ~-----~~g~~~-~~~~~~d~~~~~~~k~---~~~~~l~~~~~~~l~~~gV~~i~G~a~-~v--d~-~~---V~v-~--- 211 (558)
T PLN02546 152 R-----GFGWKY-ETEPKHDWNTLIANKN---AELQRLTGIYKNILKNAGVTLIEGRGK-IV--DP-HT---VDV-D--- 211 (558)
T ss_pred h-----hcCccc-CCCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHhCCcEEEEeEEE-Ec--cC-CE---EEE-C---
Confidence 0 000000 0000111111000000 012344556666777889999987532 22 22 22 333 2
Q ss_pred ccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 257 AKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 257 ~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
|.++.+|.||+|+|+++.
T Consensus 212 ------------G~~~~~D~LVIATGs~p~ 229 (558)
T PLN02546 212 ------------GKLYTARNILIAVGGRPF 229 (558)
T ss_pred ------------CEEEECCEEEEeCCCCCC
Confidence 468999999999999874
No 113
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.18 E-value=1.7e-10 Score=120.45 Aligned_cols=144 Identities=19% Similarity=0.274 Sum_probs=89.3
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEE-cCCCCCCCccccc--cccChHHHHHhhhhhhhcCCCeeeeccCcc
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVV-EKGAEVGAHIISG--NVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~vi-Ek~~~~g~~~~~g--~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (641)
||+|||||.||+.||+.+|+. |.+|+|+ ++.+.++....+. +.+....|.+-+ ...+..+....+...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~------G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Ei---dalgg~m~~~aD~~~ 71 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARM------GAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREI---DALGGLMGRAADETG 71 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------T--EEEEES-GGGTT--SSSSEEESTTHHHHHHHH---HHTT-SHHHHHHHHE
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEeecccccccccchhhhccccccchhHHH---hhhhhHHHHHHhHhh
Confidence 899999999999999999999 9999999 5555555432111 222233332222 221111111111222
Q ss_pred E--EEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHH-cCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCc
Q 006539 186 F--WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSK 262 (641)
Q Consensus 186 ~--~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~ 262 (641)
+ ..+....+... ....+.++|..+.+++.+.+++ .+++|+. ..|+++..++ ++|.+|.+.+
T Consensus 72 i~~~~lN~skGpav-----~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~e~-~~v~GV~~~~--------- 135 (392)
T PF01134_consen 72 IHFRMLNRSKGPAV-----HALRAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIVEN-GKVKGVVTKD--------- 135 (392)
T ss_dssp EEEEEESTTS-GGC-----TEEEEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEECT-TEEEEEEETT---------
T ss_pred hhhhcccccCCCCc-----cchHhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEecC-CeEEEEEeCC---------
Confidence 2 22222211111 1114579999999999999988 4689874 5799998877 7899999987
Q ss_pred ccccccceEEEcCEEEEcCCC
Q 006539 263 KENFQRGVELRGRITLLAEGC 283 (641)
Q Consensus 263 ~~~~~~g~~i~a~~vV~A~G~ 283 (641)
|..+.+|.||+|||.
T Consensus 136 ------g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 136 ------GEEIEADAVVLATGT 150 (392)
T ss_dssp ------SEEEEECEEEE-TTT
T ss_pred ------CCEEecCEEEEeccc
Confidence 789999999999998
No 114
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.18 E-value=2.1e-10 Score=126.28 Aligned_cols=146 Identities=23% Similarity=0.326 Sum_probs=87.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcC-CCeeeeccCc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEE-APIRVPVSSD 184 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~-~~~~~~~~~~ 184 (641)
..|||+||||||||+++|+.|++. |++|+||||...+||.+.+.+|++.+.|......+.... .+.....
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~------G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~--- 74 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKL------GKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSY--- 74 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC------CCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhccc---
Confidence 469999999999999999999999 999999999888999999999999887754332221100 0000000
Q ss_pred cEEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccc
Q 006539 185 KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKE 264 (641)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~ 264 (641)
.....++++..+... . --...+.+.+.+.+++.||+++.++.. .+ +.+.+ .|...+ |.
T Consensus 75 -----~~~~~~~~~~l~~~~-~--~~~~~~~~~~~~~~~~~~v~~~~g~~~-~~---~~~~~-~v~~~~------g~--- 132 (461)
T PRK05249 75 -----RVKLRITFADLLARA-D--HVINKQVEVRRGQYERNRVDLIQGRAR-FV---DPHTV-EVECPD------GE--- 132 (461)
T ss_pred -----CCcCccCHHHHHHHH-H--HHHHHHHHHHHHHHHHCCCEEEEEEEE-Ee---cCCEE-EEEeCC------Cc---
Confidence 000000000000000 0 000123344555667789999988532 22 22333 455443 11
Q ss_pred ccccceEEEcCEEEEcCCCCCc
Q 006539 265 NFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 265 ~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
..++++|.||+|+|+.+.
T Consensus 133 ----~~~~~~d~lviATGs~p~ 150 (461)
T PRK05249 133 ----VETLTADKIVIATGSRPY 150 (461)
T ss_pred ----eEEEEcCEEEEcCCCCCC
Confidence 147899999999998764
No 115
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.18 E-value=4.7e-10 Score=125.84 Aligned_cols=164 Identities=21% Similarity=0.259 Sum_probs=94.6
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc-ccccccC--------h-HHHHHhhhhhhhcC
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE--------P-RALNELLPQWKQEE 174 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i~--------~-~~l~~l~~~~~~~~ 174 (641)
.+++||||||||.|||+||+.+++. |++|+||||....+++. .+++.+. + ...+.++.+.....
T Consensus 3 ~~~~DVvVVG~G~AGl~AAl~Aae~------G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g 76 (566)
T PRK06452 3 KIEYDAVVIGGGLAGLMSAHEIASA------GFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGG 76 (566)
T ss_pred cccCcEEEECccHHHHHHHHHHHHC------CCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhh
Confidence 3579999999999999999999998 99999999987655543 2222221 0 11111111110000
Q ss_pred CC------eeeec--cCccEEEeecCccccCCC----------C---CCCCCcEEe--eHHHHHHHHHHHHHHcCCEEec
Q 006539 175 AP------IRVPV--SSDKFWFLTKDRAFSLPS----------P---FSNRGNYVI--SLSQLVRWLGGKAEELGVEIYP 231 (641)
Q Consensus 175 ~~------~~~~~--~~~~~~~~~~~~~~~~~~----------~---~~~~~~~~v--~~~~l~~~L~~~a~~~Gv~i~~ 231 (641)
.. +...+ ..+.+.++.. .++.+.. . ......+.. ....+.+.|.+.+.+.||+++.
T Consensus 77 ~~~~d~~~v~~~~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~ 155 (566)
T PRK06452 77 DYLVDQDAAELLSNKSGEIVMLLER-WGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYN 155 (566)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHH-CCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 00 00000 0000011100 0011100 0 000000111 2356778888888888999999
Q ss_pred CceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 232 GFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 232 g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
++.++++..++ |+|+||...+. .+|+. ..+.||.||+|||..+.
T Consensus 156 ~~~~~~Li~~~-g~v~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~ 199 (566)
T PRK06452 156 EWFSLDLVTDN-KKVVGIVAMQM---KTLTP-------FFFKTKAVVLATGGMGM 199 (566)
T ss_pred CcEEEEEEEEC-CEEEEEEEEEC---CCCeE-------EEEEeCeEEECCCcccc
Confidence 99999999864 88999987541 12221 57899999999999884
No 116
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.17 E-value=2.3e-10 Score=125.89 Aligned_cols=54 Identities=41% Similarity=0.690 Sum_probs=49.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHh
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l 166 (641)
.+|||+||||||||+++|+.|+++ |++|+|+||.. +||+|.+-+|++.+.+.+.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~------G~~V~liE~~~-~GG~c~~~gciP~k~l~~~ 56 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQL------GLKVAIVEKEK-LGGTCLNRGCIPSKALLHA 56 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHC------CCcEEEEeccc-cccceeecccCCcHHHHHh
Confidence 369999999999999999999999 99999999987 8999999999998887543
No 117
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.17 E-value=3.6e-10 Score=128.12 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCch
Q 006539 215 VRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 215 ~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~v 287 (641)
.+.|.+.+++.||+|++++.++++..++ ++|+||...+. .+|.. ..+.||.||+|||..+.+
T Consensus 173 ~~~L~~~~~~~gV~i~~~t~v~~Li~d~-g~V~GV~~~~~---~~g~~-------~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 173 YQALSRQIAAGTVKMYTRTEMLDLVVVD-GRARGIVARNL---VTGEI-------ERHTADAVVLATGGYGNV 234 (640)
T ss_pred HHHHHHHHHhcCCEEEeceEEEEEEEeC-CEEEEEEEEEC---CCCcE-------EEEECCEEEECCCCcccC
Confidence 3666677888899999999999998765 78889887541 12221 478999999999998863
No 118
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.16 E-value=2.3e-10 Score=127.81 Aligned_cols=71 Identities=20% Similarity=0.212 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEc-CEEEEcCCCCCchhHH
Q 006539 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRG-RITLLAEGCRGSLSEK 290 (641)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a-~~vV~A~G~~s~vr~~ 290 (641)
..|...|.+.+++.||+|++++.+++++.+ +|+|++|...+ +|. ...+.+ +.||+|+|.++... +
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-----~g~-------~~~i~a~kaVILAtGGf~~n~-e 282 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTDD-GGRVTGAVVDH-----RGR-------EVTVTARRGVVLAAGGFDHDM-E 282 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEec-CCEEEEEEEEE-----CCc-------EEEEEcCCEEEEecCCccccH-H
Confidence 456677888899999999999999999875 48898987643 121 145666 68999999999853 4
Q ss_pred HHHHcC
Q 006539 291 LIKNFK 296 (641)
Q Consensus 291 l~~~~~ 296 (641)
|.+++.
T Consensus 283 m~~~y~ 288 (564)
T PRK12845 283 MRWKFQ 288 (564)
T ss_pred HHHHhC
Confidence 544443
No 119
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.16 E-value=1.6e-08 Score=112.31 Aligned_cols=66 Identities=21% Similarity=0.176 Sum_probs=52.1
Q ss_pred EeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 208 VISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 208 ~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
.++...+...+...+.+.|++++.+++|+++..++ + .++|.+.+. .|+ ..+++||.||.|+|.|+.
T Consensus 151 ~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~-~-~~~v~~~~~----~g~-------~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 151 WVDDARLVVLNALDAAERGATILTRTRCVSARREG-G-LWRVETRDA----DGE-------TRTVRARALVNAAGPWVT 216 (502)
T ss_pred eecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcC-C-EEEEEEEeC----CCC-------EEEEEecEEEECCCccHH
Confidence 46788999999999999999999999999998765 3 346766551 122 257999999999999973
No 120
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.16 E-value=5.2e-10 Score=125.75 Aligned_cols=71 Identities=23% Similarity=0.332 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcC-EEEEcCCCCCchhHHH
Q 006539 213 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGR-ITLLAEGCRGSLSEKL 291 (641)
Q Consensus 213 ~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~-~vV~A~G~~s~vr~~l 291 (641)
.+...|.+.+++.|++|++++.+++++.+++|+|++|.... +|+ ...++|+ .||+|+|..+. ..+|
T Consensus 214 ~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~-----~~~-------~~~i~a~~aVilAtGGf~~-N~em 280 (584)
T PRK12835 214 SLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVER-----EGR-------TLRIGARRGVILATGGFDH-DMDW 280 (584)
T ss_pred HHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEe-----CCc-------EEEEEeceeEEEecCcccC-CHHH
Confidence 34556777788889999999999999998778999998743 232 2568897 69999999987 3455
Q ss_pred HHHcC
Q 006539 292 IKNFK 296 (641)
Q Consensus 292 ~~~~~ 296 (641)
.+++.
T Consensus 281 ~~~y~ 285 (584)
T PRK12835 281 RKEYL 285 (584)
T ss_pred HHHhC
Confidence 55543
No 121
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.16 E-value=3.6e-10 Score=124.09 Aligned_cols=62 Identities=26% Similarity=0.197 Sum_probs=51.0
Q ss_pred cEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCC
Q 006539 206 NYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (641)
Q Consensus 206 ~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s 285 (641)
...++...+.+.|.+.+++.|++|+.++.|+++... + .+.|++.+ | +++||.||+|+|+++
T Consensus 177 ~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~--~-~~~v~t~~---------------g-~v~A~~VV~Atga~s 237 (460)
T TIGR03329 177 AASVQPGLLVRGLRRVALELGVEIHENTPMTGLEEG--Q-PAVVRTPD---------------G-QVTADKVVLALNAWM 237 (460)
T ss_pred CeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEeeC--C-ceEEEeCC---------------c-EEECCEEEEcccccc
Confidence 456789999999999999999999999999998742 2 23577654 3 689999999999986
Q ss_pred c
Q 006539 286 S 286 (641)
Q Consensus 286 ~ 286 (641)
.
T Consensus 238 ~ 238 (460)
T TIGR03329 238 A 238 (460)
T ss_pred c
Confidence 3
No 122
>PRK06370 mercuric reductase; Validated
Probab=99.16 E-value=2.5e-10 Score=125.62 Aligned_cols=54 Identities=28% Similarity=0.520 Sum_probs=49.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHh
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l 166 (641)
.+|||+||||||||+++|+.|+++ |++|+||||. .+||+|++.+|++++.|...
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~------G~~v~lie~~-~~GG~c~~~gciPsk~l~~~ 57 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGL------GMKVALIERG-LLGGTCVNTGCVPTKTLIAS 57 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC------CCeEEEEecC-ccCCceeccccCcHHHHHHH
Confidence 469999999999999999999999 9999999986 57999999999999987554
No 123
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.15 E-value=1.4e-10 Score=126.04 Aligned_cols=161 Identities=20% Similarity=0.272 Sum_probs=89.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc-ccccccCh----HHHHHhhhhhhhcCC----C
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFEP----RALNELLPQWKQEEA----P 176 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i~~----~~l~~l~~~~~~~~~----~ 176 (641)
+++||||||+|.|||+||+.++ . |.+|+||||.+..+++. .+++.+.. .....++.++..... +
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~------G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~ 75 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-K------DLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNL 75 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-c------CCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCH
Confidence 4789999999999999999974 5 99999999998776653 23333320 111111111110000 0
Q ss_pred --ee----------eeccCccEEEeecCccccCCCCCCCCCcEE-----eeHHHHHHHHHHHHHH-cCCEEecCceEEEE
Q 006539 177 --IR----------VPVSSDKFWFLTKDRAFSLPSPFSNRGNYV-----ISLSQLVRWLGGKAEE-LGVEIYPGFAASEI 238 (641)
Q Consensus 177 --~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i 238 (641)
+. ......++.|........+........... .....+.+.|.+.+++ .||+|++++.++++
T Consensus 76 ~lv~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~L 155 (433)
T PRK06175 76 EAVKILANESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDI 155 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeee
Confidence 00 000000111100000000000000000011 1234677888888875 58999999999999
Q ss_pred EEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 239 LYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 239 ~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
..++ +++.+|...+ +|. ...+.||.||+|+|..+.
T Consensus 156 i~~~-~~v~Gv~~~~-----~g~-------~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 156 IEND-NTCIGAICLK-----DNK-------QINIYSKVTILATGGIGG 190 (433)
T ss_pred EecC-CEEEEEEEEE-----CCc-------EEEEEcCeEEEccCcccc
Confidence 8765 6777865432 111 147899999999999765
No 124
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.15 E-value=4.8e-10 Score=122.67 Aligned_cols=72 Identities=18% Similarity=0.210 Sum_probs=58.1
Q ss_pred EEeeHHHHHHHHHHHHHH----cC--CEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEc
Q 006539 207 YVISLSQLVRWLGGKAEE----LG--VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLA 280 (641)
Q Consensus 207 ~~v~~~~l~~~L~~~a~~----~G--v~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A 280 (641)
..++...+.+.|.+.+++ .| ++|+++++|+++..+++ .++.|++.+ | +++||.||+|
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~-~~~~V~T~~---------------G-~i~A~~VVva 268 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSND-SLYKIHTNR---------------G-EIRARFVVVS 268 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCC-CeEEEEECC---------------C-EEEeCEEEEC
Confidence 468889999999999998 77 88999999999988753 345687765 3 6999999999
Q ss_pred CCCCCchhHHHHHHcCCC
Q 006539 281 EGCRGSLSEKLIKNFKLR 298 (641)
Q Consensus 281 ~G~~s~vr~~l~~~~~~~ 298 (641)
+|.|+. .+.+.+|+.
T Consensus 269 AG~~S~---~La~~~Gi~ 283 (497)
T PTZ00383 269 ACGYSL---LFAQKMGYG 283 (497)
T ss_pred cChhHH---HHHHHhCCC
Confidence 999974 566666654
No 125
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.15 E-value=3.9e-10 Score=123.19 Aligned_cols=52 Identities=27% Similarity=0.455 Sum_probs=47.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCC-CCCccccccccChHHHH
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE-VGAHIISGNVFEPRALN 164 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~-~g~~~~~g~~i~~~~l~ 164 (641)
+|||+||||||||+++|+.|+++ |++|+||||... +|++|.+.+|++.+.+.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~------g~~V~liE~~~~~~GG~c~~~gciP~k~~~ 55 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASA------GKKVALVEESKAMYGGTCINIGCIPTKTLL 55 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC------CCEEEEEecCCcccceeeecCccccchHhh
Confidence 69999999999999999999999 999999999864 69999889999887763
No 126
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.14 E-value=9.8e-10 Score=123.83 Aligned_cols=67 Identities=16% Similarity=0.285 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCC---CcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCch
Q 006539 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDAD---NKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~---g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~v 287 (641)
...+.+.|.+.+++.||+++.++.++++..+++ |++.||...+. ++|+. ..+.|+.||+|||..+.+
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYEL---ATGEI-------HVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEc---CCCeE-------EEEEeCeEEECCCCCccc
Confidence 357888899999999999999999999987653 78888876320 12221 468999999999998853
No 127
>PRK06116 glutathione reductase; Validated
Probab=99.14 E-value=2.2e-10 Score=125.55 Aligned_cols=52 Identities=19% Similarity=0.431 Sum_probs=48.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHH
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNE 165 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~ 165 (641)
+|||+||||||||+++|+.|+++ |++|+|||+. .+||+|++-+|++++.|..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~------G~~V~liE~~-~~GG~c~n~gciP~k~l~~ 55 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMY------GAKVALIEAK-RLGGTCVNVGCVPKKLMWY 55 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC------CCeEEEEecc-chhhhhhccCcchHHHHHH
Confidence 69999999999999999999999 9999999996 7899999999999987744
No 128
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.13 E-value=1.7e-08 Score=108.97 Aligned_cols=171 Identities=23% Similarity=0.314 Sum_probs=106.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc-ccccccC--------------hHHHHHhhhhh
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE--------------PRALNELLPQW 170 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i~--------------~~~l~~l~~~~ 170 (641)
+++||+|||||+.|+-.|..++.+ |++|+|+|+++...|+. .+...|. ..++.|-- .+
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~R------Gl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~-vL 83 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGR------GLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAERE-VL 83 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhC------CCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHH-HH
Confidence 689999999999999999999999 99999999998765543 2222222 11121110 01
Q ss_pred hhc----CCC--eeeeccC--ccEE-----------------------EeecCccccCCCCCCC---C-----CcEEeeH
Q 006539 171 KQE----EAP--IRVPVSS--DKFW-----------------------FLTKDRAFSLPSPFSN---R-----GNYVISL 211 (641)
Q Consensus 171 ~~~----~~~--~~~~~~~--~~~~-----------------------~~~~~~~~~~~~~~~~---~-----~~~~v~~ 211 (641)
... -.| +..+... ...+ .+.........+.+.. . ..+.++-
T Consensus 84 ~~~APH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vdd 163 (532)
T COG0578 84 LRIAPHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDD 163 (532)
T ss_pred HHhCccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceech
Confidence 110 001 1111111 0000 0000000111111111 1 1345777
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCchhHHH
Q 006539 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKL 291 (641)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l 291 (641)
..|.-.....|.+.|.+++..++|+++..++ + +++|.+.|. .+|+. .+++|+.||.|+|.|+ .++
T Consensus 164 aRLv~~~a~~A~~~Ga~il~~~~v~~~~re~-~-v~gV~~~D~---~tg~~-------~~ira~~VVNAaGpW~---d~i 228 (532)
T COG0578 164 ARLVAANARDAAEHGAEILTYTRVESLRREG-G-VWGVEVEDR---ETGET-------YEIRARAVVNAAGPWV---DEI 228 (532)
T ss_pred HHHHHHHHHHHHhcccchhhcceeeeeeecC-C-EEEEEEEec---CCCcE-------EEEEcCEEEECCCccH---HHH
Confidence 8888888888999999999999999999887 4 889998872 23432 6899999999999996 455
Q ss_pred HHHcCCC
Q 006539 292 IKNFKLR 298 (641)
Q Consensus 292 ~~~~~~~ 298 (641)
.+..+..
T Consensus 229 ~~~~~~~ 235 (532)
T COG0578 229 LEMAGLE 235 (532)
T ss_pred HHhhccc
Confidence 5555443
No 129
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=2.6e-10 Score=116.73 Aligned_cols=114 Identities=28% Similarity=0.435 Sum_probs=80.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCc-EEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~-V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (641)
+.|||+|||||||||+||+.+++. +++ ++|+|+. .+|+.. .. +.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~------~l~~~li~~~~-~~gg~~------~~---------~~------------- 46 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARA------GLKVVLILEGG-EPGGQL------TK---------TT------------- 46 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHc------CCCcEEEEecC-CcCCcc------cc---------ce-------------
Confidence 469999999999999999999999 999 6666654 344311 00 00
Q ss_pred cEEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccc
Q 006539 185 KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKE 264 (641)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~ 264 (641)
... ++|.. .-.+....|.+.+.++++..|+++.. ..|.++...++ ...|++.+
T Consensus 47 ---~ve-----nypg~-----~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~--~F~v~t~~----------- 99 (305)
T COG0492 47 ---DVE-----NYPGF-----PGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGG--PFKVKTDK----------- 99 (305)
T ss_pred ---eec-----CCCCC-----ccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCc--eEEEEECC-----------
Confidence 000 01100 01245678999999999999999987 66777766553 45688776
Q ss_pred ccccceEEEcCEEEEcCCCCCc
Q 006539 265 NFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 265 ~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
+. +++|.||+|+|....
T Consensus 100 ----~~-~~ak~vIiAtG~~~~ 116 (305)
T COG0492 100 ----GT-YEAKAVIIATGAGAR 116 (305)
T ss_pred ----Ce-EEEeEEEECcCCccc
Confidence 44 999999999998764
No 130
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.12 E-value=4.3e-09 Score=104.08 Aligned_cols=171 Identities=19% Similarity=0.261 Sum_probs=98.2
Q ss_pred cCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccCCCCCCcceEEEEEeCCCe
Q 006539 274 GRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQ 353 (641)
Q Consensus 274 a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 353 (641)
|.++|+|||..|.+|+++. + ......++.+|+.. .+.+- ..++. -|.+ +.+. +-..+|+++.+.
T Consensus 2 A~LtivaDG~~S~fRk~l~-----~--~~~~v~S~fvGl~l-~~~~l--p~~~~-ghvi---l~~~--~pil~YqI~~~e 65 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELS-----D--NKPQVRSYFVGLIL-KDAPL--PKPNH-GHVI---LGKP--GPILLYQISSNE 65 (276)
T ss_pred CCEEEEecCCchHHHHhhc-----C--CCCceeeeEEEEEE-cCCCC--CCCCc-eEEE---EcCC--CcEEEEEcCCCc
Confidence 7899999999999999873 1 12233445555532 11111 12222 2222 1222 336889999888
Q ss_pred EEEEEEEccCCCCCCCChHHHHHHHhc--CCc--------hhhhccCCceeeeccEEeecCCCccCCccccCCEEEEecC
Q 006539 354 IALGLVVALNYHNPFLNPYEEFQKFKH--HPA--------IKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCA 423 (641)
Q Consensus 354 ~~ig~~~~~d~~~~~~~~~~~~~~~~~--~p~--------i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~~~v~LiGDA 423 (641)
+++-+-+..+ +-|..+..+..+.++. .|. +.+.+++++ .+.+|..-+.+ .....++++++|||
T Consensus 66 tR~Lvdvp~~-k~P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~r-----irsMPn~~lp~-~~~~~~G~vllGDA 138 (276)
T PF08491_consen 66 TRVLVDVPGP-KLPSVSNGELKEYLREVVAPQLPEELRPSFEKALEDGR-----IRSMPNSFLPA-SPNWKPGVVLLGDA 138 (276)
T ss_pred eEEEEEeCCC-ccCCccchHHHHHHHHHHHhhchHHHHHHHHHHhccCC-----cceecccccCC-CCCCCCCEEEEehh
Confidence 8887776544 1222221121111111 122 222333332 22344433322 23344799999999
Q ss_pred CCCCCCCCccchHHHHHHHHHHHHHHhcc--ccC----CchHHHHHHHHH
Q 006539 424 AGFLNVPKIKGTHTAMKSGMLAAEAGFGV--LHE----DSNMEIYWDTLQ 467 (641)
Q Consensus 424 Ah~~~P~~g~G~~~Ai~da~~lA~~l~~~--~~~----~~~l~~Ye~~~~ 467 (641)
+++.+|++|+||+.|+.|+.++++.|... +.+ .++++.|...|+
T Consensus 139 ~nmrHPLTGgGMTVAl~Dv~lL~~lL~~~~dl~d~~~v~~~l~~f~~~Rk 188 (276)
T PF08491_consen 139 ANMRHPLTGGGMTVALNDVVLLRDLLSPIPDLSDTKAVLEALKKFHWKRK 188 (276)
T ss_pred hcCcCCccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999876 322 134555554444
No 131
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.12 E-value=1.1e-09 Score=123.45 Aligned_cols=167 Identities=23% Similarity=0.318 Sum_probs=92.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc-ccccccC-------h-HHHHHhhhhhhhcCCC
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE-------P-RALNELLPQWKQEEAP 176 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i~-------~-~~l~~l~~~~~~~~~~ 176 (641)
.++||||||||+|||+||+.|++. ++|.+|+||||....+++. .+++.+. + ...+..+.+.......
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~----g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~ 77 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRL----DPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDY 77 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHh----cCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999986 2258999999987656543 2222221 1 1111111000000000
Q ss_pred ------ee----------eeccCccEEEee-cCcccc---CCCCCCCCCcEEe--eHHHHHHHHHHHHHHcCCEEecCce
Q 006539 177 ------IR----------VPVSSDKFWFLT-KDRAFS---LPSPFSNRGNYVI--SLSQLVRWLGGKAEELGVEIYPGFA 234 (641)
Q Consensus 177 ------~~----------~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~v--~~~~l~~~L~~~a~~~Gv~i~~g~~ 234 (641)
.. ......++.|-. ....+. +......+..+.. ....+.+.|.+.+++.||+++.++.
T Consensus 78 l~d~~~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~ 157 (575)
T PRK05945 78 LADQDAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEWY 157 (575)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCcE
Confidence 00 000000111100 000000 0000000001111 2357888898988889999999999
Q ss_pred EEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCch
Q 006539 235 ASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 235 v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~v 287 (641)
++++..++ +++.||...+ .++|+ ...+.|+.||+|+|.++.+
T Consensus 158 v~~L~~~~-g~v~Gv~~~~---~~~g~-------~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 158 VMRLILED-NQAKGVVMYH---IADGR-------LEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred EEEEEEEC-CEEEEEEEEE---cCCCe-------EEEEECCEEEECCCCCcCC
Confidence 99998764 7787876422 01222 1468999999999999853
No 132
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.12 E-value=1e-09 Score=120.45 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=58.9
Q ss_pred cEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCC
Q 006539 206 NYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (641)
Q Consensus 206 ~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s 285 (641)
...++...+.+.|.+.+++.|++|+++++|+++..++++.+ .|.+.+. .+|+ +.+++||+||+|.|.++
T Consensus 172 ~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~---~~g~-------~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 172 GTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNT---RTGG-------KRTLNTRFVFVGAGGGA 240 (483)
T ss_pred CEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeec---cCCc-------eEEEECCEEEECCCcch
Confidence 45689999999999999999999999999999987654433 3443220 1111 24789999999999997
Q ss_pred chhHHHHHHcCCC
Q 006539 286 SLSEKLIKNFKLR 298 (641)
Q Consensus 286 ~vr~~l~~~~~~~ 298 (641)
..+.+.+|+.
T Consensus 241 ---~~La~~~Gi~ 250 (483)
T TIGR01320 241 ---LPLLQKSGIP 250 (483)
T ss_pred ---HHHHHHcCCC
Confidence 4566667765
No 133
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.12 E-value=1.1e-09 Score=122.76 Aligned_cols=166 Identities=23% Similarity=0.286 Sum_probs=92.3
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCC-CCCc-cccccccC-----hHHHHHhhhhhhhcCC-
Q 006539 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE-VGAH-IISGNVFE-----PRALNELLPQWKQEEA- 175 (641)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~-~g~~-~~~g~~i~-----~~~l~~l~~~~~~~~~- 175 (641)
+..++||||||||.|||+||+.+ +. |++|+|+||... .|+. ..+++.+. .....+.+.++.....
T Consensus 4 ~~~~~DVlVVG~G~AGl~AAi~A-~~------G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~ 76 (543)
T PRK06263 4 EIMITDVLIIGSGGAGARAAIEA-ER------GKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAY 76 (543)
T ss_pred ceeccCEEEECccHHHHHHHHHH-hc------CCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 44678999999999999999999 77 999999999864 3332 23333221 1111111111110000
Q ss_pred ---C--ee----------eeccCccEEEeec-Ccccc-CCCCC--CCCCcEE--eeHHHHHHHHHHHHHHcCCEEecCce
Q 006539 176 ---P--IR----------VPVSSDKFWFLTK-DRAFS-LPSPF--SNRGNYV--ISLSQLVRWLGGKAEELGVEIYPGFA 234 (641)
Q Consensus 176 ---~--~~----------~~~~~~~~~~~~~-~~~~~-~~~~~--~~~~~~~--v~~~~l~~~L~~~a~~~Gv~i~~g~~ 234 (641)
+ +. ......++.|... ...+. .+... .....+. .....+...|.+.+++.||+|++++.
T Consensus 77 ~~d~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~ 156 (543)
T PRK06263 77 LNDPKLVEILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVM 156 (543)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeE
Confidence 0 00 0000001111000 00000 00000 0000000 12356788888888889999999999
Q ss_pred EEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 235 ASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 235 v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
++++..+++++|++|...+. ++|+. ..+.|+.||+|||..+.
T Consensus 157 v~~Li~~~~~~v~Gv~~~~~---~~g~~-------~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 157 AIKLIVDENREVIGAIFLDL---RNGEI-------FPIYAKATILATGGAGQ 198 (543)
T ss_pred eeeeEEeCCcEEEEEEEEEC---CCCcE-------EEEEcCcEEECCCCCCC
Confidence 99998876555878765320 12221 57899999999999874
No 134
>PRK14727 putative mercuric reductase; Provisional
Probab=99.12 E-value=7.2e-10 Score=122.30 Aligned_cols=60 Identities=23% Similarity=0.405 Sum_probs=53.6
Q ss_pred cccccccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHh
Q 006539 101 MCRESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (641)
Q Consensus 101 ~~~~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l 166 (641)
+.....+|||+||||||+|+++|+.|++. |.+|+|+|+...+||+|++.||++.+.|.+.
T Consensus 10 ~~~~~~~~dvvvIG~G~aG~~~a~~~~~~------g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~ 69 (479)
T PRK14727 10 MTRSKLQLHVAIIGSGSAAFAAAIKAAEH------GARVTIIEGADVIGGCCVNVGCVPSKILIRA 69 (479)
T ss_pred cccCCCCCcEEEECCCHHHHHHHHHHHhC------CCeEEEEEccCcceeEeccccccccHHHHHH
Confidence 34456789999999999999999999999 9999999998889999999999999887543
No 135
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.11 E-value=1.5e-09 Score=122.35 Aligned_cols=167 Identities=21% Similarity=0.228 Sum_probs=92.8
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCC---CcEEEEcCCCCCCCcc-cccccc----Ch---HHHHHhhhhhhh
Q 006539 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVD---LSVCVVEKGAEVGAHI-ISGNVF----EP---RALNELLPQWKQ 172 (641)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G---~~V~viEk~~~~g~~~-~~g~~i----~~---~~l~~l~~~~~~ 172 (641)
+..++||||||||.|||+||+.+++. | ++|+|+||....++++ .+++.+ .+ ...+..+.+...
T Consensus 2 ~~~~~DVlVVG~G~AGl~AA~~Aa~~------G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~ 75 (577)
T PRK06069 2 EVLKYDVVIVGSGLAGLRAAVAAAER------SGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVK 75 (577)
T ss_pred CceecCEEEECccHHHHHHHHHHHHh------CCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHH
Confidence 34578999999999999999999998 8 8999999998766543 232222 11 111111100000
Q ss_pred cCC----------------CeeeeccCccEEEee-cCccc---cCCCCCCCCCcEEe--eHHHHHHHHHHHHHH-cCCEE
Q 006539 173 EEA----------------PIRVPVSSDKFWFLT-KDRAF---SLPSPFSNRGNYVI--SLSQLVRWLGGKAEE-LGVEI 229 (641)
Q Consensus 173 ~~~----------------~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~v--~~~~l~~~L~~~a~~-~Gv~i 229 (641)
... .........++.|.. ....+ .+.........+.. ....+.+.|.+++.+ .||++
T Consensus 76 ~g~~~~d~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i 155 (577)
T PRK06069 76 GSDFLADQDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHF 155 (577)
T ss_pred hhcccCCHHHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEE
Confidence 000 000000011111110 00000 00000000000000 134577888888776 68999
Q ss_pred ecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCch
Q 006539 230 YPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 230 ~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~v 287 (641)
+.++.++++..++ +++.||...+. ++|+. ..+.|+.||+|||..+.+
T Consensus 156 ~~~~~v~~Li~~~-g~v~Gv~~~~~---~~g~~-------~~i~Ak~VIlATGG~~~~ 202 (577)
T PRK06069 156 YDEHFVTSLIVEN-GVFKGVTAIDL---KRGEF-------KVFQAKAGIIATGGAGRL 202 (577)
T ss_pred EECCEEEEEEEEC-CEEEEEEEEEc---CCCeE-------EEEECCcEEEcCchhccc
Confidence 9999999998765 77878765320 12221 468999999999998753
No 136
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.11 E-value=2.9e-10 Score=124.97 Aligned_cols=57 Identities=25% Similarity=0.394 Sum_probs=49.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCC--------CCCCCccccccccChHHHHHhh
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKG--------AEVGAHIISGNVFEPRALNELL 167 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~--------~~~g~~~~~g~~i~~~~l~~l~ 167 (641)
.+||||||||||+|+++|+.++++ .|.+|+|||+. ..+||+|++-||+++++|.+..
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~-----~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a 66 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATL-----YKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGA 66 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHh-----cCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHH
Confidence 369999999999999999999994 17999999984 4689999999999999986553
No 137
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.09 E-value=2e-09 Score=121.02 Aligned_cols=166 Identities=17% Similarity=0.224 Sum_probs=92.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc-ccccccC-----hHHHHHhhhhhhhcCCC---
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE-----PRALNELLPQWKQEEAP--- 176 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i~-----~~~l~~l~~~~~~~~~~--- 176 (641)
.++||||||||.|||+||+.+++. ++|.+|+|+||....++++ .+++.+. ....+..+.+......-
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~----g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d 78 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEA----NPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCE 78 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHh----CCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCC
Confidence 578999999999999999999986 2258999999997766544 2322221 01111111111100000
Q ss_pred ---eeee--ccCccEEEeecCccccCCCC------CCCCC------cE-Ee--eHHHHHHHHHHHHHHc-CCEEecCceE
Q 006539 177 ---IRVP--VSSDKFWFLTKDRAFSLPSP------FSNRG------NY-VI--SLSQLVRWLGGKAEEL-GVEIYPGFAA 235 (641)
Q Consensus 177 ---~~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~------~~-~v--~~~~l~~~L~~~a~~~-Gv~i~~g~~v 235 (641)
+... ...+.+.++. ..++.+... ....+ .+ .. ....+...|.+.+.+. +|+++.++.+
T Consensus 79 ~~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v 157 (582)
T PRK09231 79 QDVVEYFVHHCPTEMTQLE-QWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFV 157 (582)
T ss_pred HHHHHHHHHHHHHHHHHHH-HcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEE
Confidence 0000 0000000110 001111000 00000 00 01 2346778888877775 7999999999
Q ss_pred EEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCch
Q 006539 236 SEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 236 ~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~v 287 (641)
+++..++ +++.||..-+ ..+|+. ..+.|+.||+|||..+.+
T Consensus 158 ~~Li~~~-g~v~Gv~~~~---~~~g~~-------~~i~AkaVIlATGG~~~l 198 (582)
T PRK09231 158 LDILVDD-GHVRGLVAMN---MMEGTL-------VQIRANAVVMATGGAGRV 198 (582)
T ss_pred EEEEEeC-CEEEEEEEEE---cCCCcE-------EEEECCEEEECCCCCcCC
Confidence 9998765 7787876532 012221 578999999999999864
No 138
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.09 E-value=1.6e-09 Score=122.04 Aligned_cols=65 Identities=28% Similarity=0.441 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCch
Q 006539 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~v 287 (641)
..+...|.+.+++.||++++++.++++..++ +++.+|...+. .+|+ ...+.|+.||+|||..+.+
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~-g~v~Gv~~~~~---~~g~-------~~~i~Ak~VVlAtGG~~~~ 193 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDD-GRVRGVVAYDL---KTGE-------IVFFRAKAVVLATGGYGRI 193 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeC-CEEEEEEEEEC---CCCc-------EEEEECCeEEECCCcccCC
Confidence 4677888888888899999999999998765 78888875430 1222 1478999999999998864
No 139
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.09 E-value=2.4e-09 Score=120.56 Aligned_cols=164 Identities=16% Similarity=0.187 Sum_probs=91.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc-ccccccC--------hHHHHHhhhhhhhcCCC-
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE--------PRALNELLPQWKQEEAP- 176 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i~--------~~~l~~l~~~~~~~~~~- 176 (641)
..||||||+|+|||+||+.+++. |++|+||||....++++ .+++.+. .......+.+.......
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~------G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~ 76 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEA------GVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFL 76 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHc------CCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCc
Confidence 46999999999999999999998 99999999988765443 2222221 01111111111000000
Q ss_pred -----eeeec--cCccEEEeecCccccCCCC------CCCCCc-------EE--eeHHHHHHHHHHHHHHcC----CEEe
Q 006539 177 -----IRVPV--SSDKFWFLTKDRAFSLPSP------FSNRGN-------YV--ISLSQLVRWLGGKAEELG----VEIY 230 (641)
Q Consensus 177 -----~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~-------~~--v~~~~l~~~L~~~a~~~G----v~i~ 230 (641)
+...+ ..+.+.++.. .++.+... ....++ +. .....+...|.+.+++.+ |+++
T Consensus 77 ~d~~~v~~~~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i~ 155 (589)
T PRK08641 77 ANQPPVKAMCEAAPGIIHLLDR-MGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKY 155 (589)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-cCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEEE
Confidence 00000 0000000000 00000000 000000 00 124567778887776543 8899
Q ss_pred cCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCch
Q 006539 231 PGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 231 ~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~v 287 (641)
.++.++++..+++|+|+||...+. .+|+. ..+.|+.||+|||..+.+
T Consensus 156 ~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~ 202 (589)
T PRK08641 156 EGWEFLGAVLDDEGVCRGIVAQDL---FTMEI-------ESFPADAVIMATGGPGII 202 (589)
T ss_pred eeEEEEEEEECCCCEEEEEEEEEC---CCCcE-------EEEECCEEEECCCCCcCC
Confidence 999999999876688999987541 12221 468999999999999863
No 140
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.09 E-value=2.8e-09 Score=119.65 Aligned_cols=166 Identities=19% Similarity=0.234 Sum_probs=94.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc-ccccccC-----hHHHHHhhhhhhhcCCCe---
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE-----PRALNELLPQWKQEEAPI--- 177 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i~-----~~~l~~l~~~~~~~~~~~--- 177 (641)
++||||||||+|||+||+.+++. ++|++|+|+||....+++. .+++.+. ....+..+.+.......+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~----g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~ 78 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEA----NPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQ 78 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHh----CCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcH
Confidence 68999999999999999999986 2368999999998766644 2323221 011111111111100000
Q ss_pred ---e----------eeccCccEEEee-cCccccCCC-CCCCC-CcEE---eeHHHHHHHHHHHHHHc-CCEEecCceEEE
Q 006539 178 ---R----------VPVSSDKFWFLT-KDRAFSLPS-PFSNR-GNYV---ISLSQLVRWLGGKAEEL-GVEIYPGFAASE 237 (641)
Q Consensus 178 ---~----------~~~~~~~~~~~~-~~~~~~~~~-~~~~~-~~~~---v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~ 237 (641)
. ......++.|.. ....+.... ..... ..+. .....+.+.|.+++.+. ||+++.++.+++
T Consensus 79 ~lv~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~ 158 (580)
T TIGR01176 79 DVVEYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTD 158 (580)
T ss_pred HHHHHHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEE
Confidence 0 000011111111 000000000 00000 0001 12457888888888774 799999999999
Q ss_pred EEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCch
Q 006539 238 ILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 238 i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~v 287 (641)
+..++ ++|.||...+. ++|+. ..+.|+.||+|||..+.+
T Consensus 159 Li~~~-g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 159 LLVDD-GRVCGLVAIEM---AEGRL-------VTILADAVVLATGGAGRV 197 (580)
T ss_pred EEeeC-CEEEEEEEEEc---CCCcE-------EEEecCEEEEcCCCCccc
Confidence 98865 78888865330 12321 578999999999999863
No 141
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.09 E-value=9.5e-10 Score=113.68 Aligned_cols=113 Identities=27% Similarity=0.405 Sum_probs=80.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
|||+|||||+|||++|..|++. |++|+|||+.. .|+..... ..+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~------g~~v~lie~~~-~gg~~~~~-----~~~------------------------ 44 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARA------NLKTLIIEGME-PGGQLTTT-----TEV------------------------ 44 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHC------CCCEEEEeccC-CCcceeec-----ccc------------------------
Confidence 6899999999999999999998 99999999876 44421100 000
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
..+|.. ...+....+...+.+.+++.|+++++ ..|+++..+++ . +.|.+.+
T Consensus 45 -------~~~~~~-----~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~-~-~~v~~~~-------------- 95 (300)
T TIGR01292 45 -------ENYPGF-----PEGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDR-P-FKVKTGD-------------- 95 (300)
T ss_pred -------cccCCC-----CCCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCC-e-eEEEeCC--------------
Confidence 000100 00123457778888888999999998 78988877653 2 2466554
Q ss_pred cceEEEcCEEEEcCCCCCc
Q 006539 268 RGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (641)
+.++++|.||+|+|.++.
T Consensus 96 -~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 96 -GKEYTAKAVIIATGASAR 113 (300)
T ss_pred -CCEEEeCEEEECCCCCcc
Confidence 568999999999998764
No 142
>PRK12839 hypothetical protein; Provisional
Probab=99.09 E-value=3e-09 Score=119.25 Aligned_cols=68 Identities=24% Similarity=0.287 Sum_probs=52.6
Q ss_pred eeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCch
Q 006539 209 ISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 209 v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~v 287 (641)
+....|...|.+.+++.|++|+.++.+++++.+++++|++|...+ ++|.. ..+.++.||+|+|.++.-
T Consensus 211 ~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~----~~g~~-------~i~aak~VVLAtGGf~~n 278 (572)
T PRK12839 211 VNGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQG----PDGAV-------TVEATRGVVLATGGFPND 278 (572)
T ss_pred ccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEe----CCCcE-------EEEeCCEEEEcCCCcccC
Confidence 345677888999999999999999999999887668899998654 22321 233458999999999873
No 143
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.09 E-value=1.2e-09 Score=119.00 Aligned_cols=153 Identities=19% Similarity=0.206 Sum_probs=90.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhh---hhh-cCCCeeeecc
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQ---WKQ-EEAPIRVPVS 182 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~---~~~-~~~~~~~~~~ 182 (641)
..+|+||||||+||+||..|++. |++|+|+||+..+||.+..........+ .+.+. +.. .-..+.....
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~------G~~v~vfE~~~~vGG~W~~~~~~~~d~~-~~~~~~~~~~s~~Y~~L~tn~p 82 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRRE------GHTVVVFEREKQVGGLWVYTPKSESDPL-SLDPTRSIVHSSVYESLRTNLP 82 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhc------CCeEEEEecCCCCcceeecCCCcCCCcc-ccCCCCcccchhhhhhhhccCC
Confidence 57899999999999999999999 9999999999999886532211110000 00000 000 0000000000
Q ss_pred CccEEEeecCccccCCCCCC-----CCCcEEeeHHHHHHHHHHHHHHcCCE--EecCceEEEEEEcCCCcEEEEEeCccc
Q 006539 183 SDKFWFLTKDRAFSLPSPFS-----NRGNYVISLSQLVRWLGGKAEELGVE--IYPGFAASEILYDADNKVIGIGTNDMG 255 (641)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~l~~~L~~~a~~~Gv~--i~~g~~v~~i~~~~~g~v~~V~~~~~g 255 (641)
.+.+.+. ++|.... ..........++.++|.+.++..|++ |.++++|+++...+ +. +.|++.+.
T Consensus 83 ~~~m~f~------dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~-~~-w~V~~~~~- 153 (461)
T PLN02172 83 RECMGYR------DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD-GK-WRVQSKNS- 153 (461)
T ss_pred HhhccCC------CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-Ce-EEEEEEcC-
Confidence 0001010 1111100 00111245788999999999999987 99999999998765 32 35665431
Q ss_pred cccCCCcccccccceEEEcCEEEEcCCCCC
Q 006539 256 IAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (641)
Q Consensus 256 ~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s 285 (641)
++. ..+..+|.||+|+|..+
T Consensus 154 ---~~~-------~~~~~~d~VIvAtG~~~ 173 (461)
T PLN02172 154 ---GGF-------SKDEIFDAVVVCNGHYT 173 (461)
T ss_pred ---CCc-------eEEEEcCEEEEeccCCC
Confidence 111 13567999999999764
No 144
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.09 E-value=8.2e-10 Score=121.79 Aligned_cols=53 Identities=38% Similarity=0.626 Sum_probs=47.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcC------CCCCCCccccccccChHHHHH
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEK------GAEVGAHIISGNVFEPRALNE 165 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk------~~~~g~~~~~g~~i~~~~l~~ 165 (641)
+|||+||||||||+++|+.|++. |.+|+|||+ ...+|++|.+-+|++.+.+..
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~------g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~ 62 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQL------GLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLA 62 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhC------CCeEEEEecccCCCCCCCcCCccccccccHHHHHHH
Confidence 69999999999999999999999 999999998 356899999999998777643
No 145
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.08 E-value=7.5e-10 Score=124.10 Aligned_cols=181 Identities=20% Similarity=0.245 Sum_probs=96.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCC--CCCCcc-ccccccC---hH---------HHHHhhhhh
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA--EVGAHI-ISGNVFE---PR---------ALNELLPQW 170 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~--~~g~~~-~~g~~i~---~~---------~l~~l~~~~ 170 (641)
+++||||||+|.|||+||+.+++. |++|+||||.+ ..|+.+ .+++.+. .. ..+.++.++
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~------G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~ds~e~~~~d~ 76 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADA------GKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIKDSLELALQDW 76 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcccCHHHHHHHH
Confidence 579999999999999999999998 99999999998 566654 3333321 11 111112221
Q ss_pred hhcCC---Ce--------eeec---cCccEEEeecCccccCCC----------CCC----CCCc-EE--eeHHHHHHHHH
Q 006539 171 KQEEA---PI--------RVPV---SSDKFWFLTKDRAFSLPS----------PFS----NRGN-YV--ISLSQLVRWLG 219 (641)
Q Consensus 171 ~~~~~---~~--------~~~~---~~~~~~~~~~~~~~~~~~----------~~~----~~~~-~~--v~~~~l~~~L~ 219 (641)
..... +. ...+ ..+.+.|+.. ..+.+.. ... .... +. .....+.+.|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~s~e~i~wL~~-~Gv~f~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~G~~~~~~l~ 155 (549)
T PRK12834 77 LGSAGFDRPEDHWPRQWAEAYVDFAAGEKRSWLHS-LGLRFFPVVGWAERGGGDAGGHGNSVPRFHITWGTGPGVVEPFE 155 (549)
T ss_pred HhccCCCCccccchHHHHHHHHHhCCHHHHHHHHH-cCCeeEecCCccccCCcccCCcccccCceecCCCCcHHHHHHHH
Confidence 11100 00 0000 0111111111 0111100 000 0000 00 01234666776
Q ss_pred HHHH---Hc-CCEEecCceEEEEEEcCCCcEEEEEeCcc--ccccCCCccc-ccccceEEEcCEEEEcCCCCCchhHHHH
Q 006539 220 GKAE---EL-GVEIYPGFAASEILYDADNKVIGIGTNDM--GIAKDGSKKE-NFQRGVELRGRITLLAEGCRGSLSEKLI 292 (641)
Q Consensus 220 ~~a~---~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~--g~~~~g~~~~-~~~~g~~i~a~~vV~A~G~~s~vr~~l~ 292 (641)
+.++ +. ||+|++++.+++++.++ ++|+||...+. +...+|+... .-..-..+.||.||+|||..+...+ |.
T Consensus 156 ~~~~~~~~~~gv~i~~~t~~~~Li~~~-g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~n~e-m~ 233 (549)
T PRK12834 156 RRVREAAARGLVRFRFRHRVDELVVTD-GAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGGNHE-LV 233 (549)
T ss_pred HHHHHHHHhCCceEEecCEeeEEEEeC-CEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcccCHH-HH
Confidence 6654 23 59999999999999864 88999986310 0000000000 0000157899999999999998544 44
Q ss_pred HHc
Q 006539 293 KNF 295 (641)
Q Consensus 293 ~~~ 295 (641)
+++
T Consensus 234 ~~~ 236 (549)
T PRK12834 234 RRN 236 (549)
T ss_pred HHh
Confidence 443
No 146
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.08 E-value=2.5e-09 Score=121.29 Aligned_cols=166 Identities=26% Similarity=0.262 Sum_probs=91.7
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc-cccccc----C----hHHHHHhhhhhhhcC
Q 006539 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVF----E----PRALNELLPQWKQEE 174 (641)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i----~----~~~l~~l~~~~~~~~ 174 (641)
+.+++||||||||.|||+||+.+++. |.+|+||||....+++. .++|.+ . .......+.+.....
T Consensus 5 ~~~~~DVvVIG~G~AGl~AAl~Aae~------G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g 78 (626)
T PRK07803 5 ERHSYDVVVIGAGGAGLRAAIEARER------GLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGG 78 (626)
T ss_pred cceeecEEEECcCHHHHHHHHHHHHC------CCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999999998 99999999987654432 222211 1 111111111100000
Q ss_pred ----C-----------Cee-eeccCccEEEee-cCccccCCCCCCCCCcEE-----eeHHHHHHHHHHHHHHc-------
Q 006539 175 ----A-----------PIR-VPVSSDKFWFLT-KDRAFSLPSPFSNRGNYV-----ISLSQLVRWLGGKAEEL------- 225 (641)
Q Consensus 175 ----~-----------~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----v~~~~l~~~L~~~a~~~------- 225 (641)
. +.. ......++.|.. ....+............+ .....+.+.|.+.+++.
T Consensus 79 ~~l~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~ 158 (626)
T PRK07803 79 KFLNNWRMAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAE 158 (626)
T ss_pred ccCCcHHHHHHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhcccccc
Confidence 0 000 000011111110 000000000000000001 12356778888888776
Q ss_pred -C-----CEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 226 -G-----VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 226 -G-----v~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
| |+++.++.++++..++ +++.+|...+. .+|+ -..+.|+.||+|+|..+.
T Consensus 159 ~G~~~~~v~i~~~~~v~~L~~~~-g~v~Gv~~~~~---~~g~-------~~~i~Ak~VVlATGG~~~ 214 (626)
T PRK07803 159 LGDYEARIKVFAECTITELLKDG-GRIAGAFGYWR---ESGR-------FVLFEAPAVVLATGGIGK 214 (626)
T ss_pred ccCCcCceEEEeCCEEEEEEEEC-CEEEEEEEEEC---CCCe-------EEEEEcCeEEECCCcccC
Confidence 6 9999999999998764 77888765320 1222 147899999999998764
No 147
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.08 E-value=2.8e-09 Score=115.73 Aligned_cols=161 Identities=24% Similarity=0.357 Sum_probs=99.4
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCc-EEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccC
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSS 183 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~-V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~ 183 (641)
...+||+|||||++||++|++|.++ |.. ++|+||+..+|+.. .....+
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~------g~~~~~i~Ek~~~~Gg~W------------------~~~ry~------- 54 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQA------GVPDFVIFEKRDDVGGTW------------------RYNRYP------- 54 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHc------CCCcEEEEEccCCcCCcc------------------hhccCC-------
Confidence 3578999999999999999999999 998 99999999988752 111000
Q ss_pred ccEEEeecCccccCCCC-CCCCCcEEeeHHHHHHHHHHHHHHcC--CEEecCceEEEEEEcCCCcEEEEEeCccccccCC
Q 006539 184 DKFWFLTKDRAFSLPSP-FSNRGNYVISLSQLVRWLGGKAEELG--VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (641)
Q Consensus 184 ~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~l~~~L~~~a~~~G--v~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g 260 (641)
++..........+|.. +.....+ -....+..++.+.+++.+ .+|.+++.|..+..++++..+.|++.+.+
T Consensus 55 -~l~~~~p~~~~~~~~~p~~~~~~~-~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~----- 127 (443)
T COG2072 55 -GLRLDSPKWLLGFPFLPFRWDEAF-APFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGG----- 127 (443)
T ss_pred -ceEECCchheeccCCCccCCcccC-CCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCC-----
Confidence 0111001101111100 0000011 112235666777777766 45778888888888887777889887611
Q ss_pred CcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCcccccCccceeeEEEEEEeecCCCCCCCcEEEEeccCCC
Q 006539 261 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLD 337 (641)
Q Consensus 261 ~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~ 337 (641)
..++++|.||+|+|..+. + ..| .++....+.|.++|...|+-.
T Consensus 128 --------~~~~~a~~vV~ATG~~~~-----------P----~iP-----------~~~G~~~f~g~~~HS~~~~~~ 170 (443)
T COG2072 128 --------TGELTADFVVVATGHLSE-----------P----YIP-----------DFAGLDEFKGRILHSADWPNP 170 (443)
T ss_pred --------eeeEecCEEEEeecCCCC-----------C----CCC-----------CCCCccCCCceEEchhcCCCc
Confidence 012679999999997542 1 111 233344567778888877544
No 148
>PLN02507 glutathione reductase
Probab=99.08 E-value=3.7e-10 Score=124.86 Aligned_cols=55 Identities=22% Similarity=0.287 Sum_probs=49.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcC---------CCCCCCccccccccChHHHHHh
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEK---------GAEVGAHIISGNVFEPRALNEL 166 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk---------~~~~g~~~~~g~~i~~~~l~~l 166 (641)
.+|||+||||||+|+.+|+.|+++ |++|+|||+ ...+||+|++-||++.+.|...
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~------G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~ 87 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANF------GAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYG 87 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHC------CCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHH
Confidence 469999999999999999999999 999999996 3568999999999999988443
No 149
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.08 E-value=1.2e-09 Score=119.49 Aligned_cols=52 Identities=27% Similarity=0.436 Sum_probs=47.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCC-CCCCccccccccChHHHH
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA-EVGAHIISGNVFEPRALN 164 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~-~~g~~~~~g~~i~~~~l~ 164 (641)
.||||||||||||+++|+.|+++ |++|+|||+.+ .+|+++.+.+|++.+.+.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~------g~~V~lie~~~~~~GG~~~~~gcip~k~l~ 55 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKA------GWRVALIEQSNAMYGGTCINIGCIPTKTLV 55 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHC------CCeEEEEcCCCCccceeEeeccccchHHHH
Confidence 69999999999999999999999 99999999976 479999999999887663
No 150
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.07 E-value=8.1e-10 Score=124.78 Aligned_cols=164 Identities=15% Similarity=0.199 Sum_probs=92.5
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcccccc--ccCh-----HHHHHhhhhhhhcCCC
Q 006539 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGN--VFEP-----RALNELLPQWKQEEAP 176 (641)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~--~i~~-----~~l~~l~~~~~~~~~~ 176 (641)
...++||||||||.|||+||+.+++. .+|.+|+||||....++...+++ .+.. ....+.+.+.......
T Consensus 8 ~~~~~DVlVIG~G~AGl~AAi~Aae~----~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~ 83 (608)
T PRK06854 8 VEVDTDILIIGGGMAGCGAAFEAKEW----APDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMG 83 (608)
T ss_pred ceeEeCEEEECcCHHHHHHHHHHHHh----CCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccC
Confidence 34579999999999999999999884 23899999999876544332222 1211 0111111111110000
Q ss_pred e----------------eeeccCccEEEeec-CccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcC-CEEecCceEEEE
Q 006539 177 I----------------RVPVSSDKFWFLTK-DRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEI 238 (641)
Q Consensus 177 ~----------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i 238 (641)
. .......++.|... ...+ .+ .......+....+.+.|.+.+++.| |+++.++.|+++
T Consensus 84 ~~d~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~-~~---~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~L 159 (608)
T PRK06854 84 IVREDLVYDIARHVDSVVHLFEEWGLPIWKDENGKY-VR---RGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDL 159 (608)
T ss_pred CCCHHHHHHHHHhHHHHHHHHHHcCCeeeecCCCCc-cc---cCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEE
Confidence 0 00000111111110 0000 00 0000011345577788888888876 999999999999
Q ss_pred EEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 239 LYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 239 ~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
..++ +++.+|...+. .+|+ ...+.||.||+|+|..+.
T Consensus 160 i~~~-g~v~Gv~~~~~---~~g~-------~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 160 LVDD-NRIAGAVGFSV---RENK-------FYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EEeC-CEEEEEEEEEc---cCCc-------EEEEECCEEEECCCchhh
Confidence 8765 67778754220 1122 147899999999998874
No 151
>PLN02815 L-aspartate oxidase
Probab=99.07 E-value=2.1e-09 Score=120.53 Aligned_cols=165 Identities=18% Similarity=0.252 Sum_probs=93.3
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc-ccccccC----h-HHHHHhhhhhhhcCCC--
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE----P-RALNELLPQWKQEEAP-- 176 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i~----~-~~l~~l~~~~~~~~~~-- 176 (641)
..++||||||+|.|||+||+.+++. | +|+||||....+++. .+++.+. + ...+.++.++......
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~------G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~ 99 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEY------G-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLC 99 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhC------C-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCC
Confidence 4578999999999999999999998 9 999999998776643 2333221 1 1111111111110000
Q ss_pred ----ee----------eeccCccEEEeec-CccccCCCC-CCCCCc--EE--eeHHHHHHHHHHHHHHc-CCEEecCceE
Q 006539 177 ----IR----------VPVSSDKFWFLTK-DRAFSLPSP-FSNRGN--YV--ISLSQLVRWLGGKAEEL-GVEIYPGFAA 235 (641)
Q Consensus 177 ----~~----------~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~--~~--v~~~~l~~~L~~~a~~~-Gv~i~~g~~v 235 (641)
+. ......++.|... ...+..... ...... +. .....+...|.+.+++. ||+|+.++.+
T Consensus 100 d~~lv~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~ 179 (594)
T PLN02815 100 DEETVRVVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFA 179 (594)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEh
Confidence 00 0000011111100 000000000 000000 00 12356778888888765 8999999999
Q ss_pred EEEEEcCCC---cEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 236 SEILYDADN---KVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 236 ~~i~~~~~g---~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
+++..+++| +|+||...+ ..+|+. ..+.||.||+|||..+.
T Consensus 180 ~~Li~~~~g~~~~v~Gv~~~~---~~~g~~-------~~i~AkaVILATGG~g~ 223 (594)
T PLN02815 180 IDLLTSQDGGSIVCHGADVLD---TRTGEV-------VRFISKVTLLASGGAGH 223 (594)
T ss_pred heeeeecCCCccEEEEEEEEE---cCCCeE-------EEEEeceEEEcCCccee
Confidence 999986544 277887643 122322 57899999999999875
No 152
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.07 E-value=4.7e-09 Score=115.34 Aligned_cols=79 Identities=19% Similarity=0.324 Sum_probs=58.3
Q ss_pred cEEeeHHHHHHHHHHHHHHcC-CEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCC
Q 006539 206 NYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (641)
Q Consensus 206 ~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~ 284 (641)
.+.++...+.+.|.+.+++.| ++|+++++|+++..++++.+ .|.+.+. .+|+ +.+++|++||+|+|.+
T Consensus 177 ~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~---~~G~-------~~~i~A~~VVvaAGg~ 245 (494)
T PRK05257 177 GTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDL---KTGE-------KRTVRAKFVFIGAGGG 245 (494)
T ss_pred ceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEc---CCCc-------eEEEEcCEEEECCCcc
Confidence 557889999999999999887 89999999999988665543 3443210 0111 1368999999999999
Q ss_pred CchhHHHHHHcCCC
Q 006539 285 GSLSEKLIKNFKLR 298 (641)
Q Consensus 285 s~vr~~l~~~~~~~ 298 (641)
+. .+.+..|+.
T Consensus 246 s~---~L~~~~Gi~ 256 (494)
T PRK05257 246 AL---PLLQKSGIP 256 (494)
T ss_pred hH---HHHHHcCCC
Confidence 73 566666665
No 153
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.06 E-value=1e-09 Score=120.59 Aligned_cols=148 Identities=14% Similarity=0.274 Sum_probs=90.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcccc---ccccChHHHHHhhhhhhhcCCCeeeeccCc
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIIS---GNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~---g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (641)
|||+|||||+||+.+|..+++. |.+|+|+|+.....+.+.+ -+.+....+.+-++.+. .......+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~------G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLG---G~~~~~~d~~ 71 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARM------GAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALG---GLMGKAADKA 71 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCCEEEEecccccccCCCccccccccccchhhhhhhccc---chHHHHHHhh
Confidence 6999999999999999999999 9999999987543322211 11111111111111111 0000000001
Q ss_pred c--EEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeCccccccCCC
Q 006539 185 K--FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (641)
Q Consensus 185 ~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~ 261 (641)
. +..+..... | .. ......+++..+.++|.+.+++. |++++.+ .|+++..++++.+.+|.+.+
T Consensus 72 ~i~~r~ln~skg---p-AV-~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~-------- 137 (617)
T TIGR00136 72 GLQFRVLNSSKG---P-AV-RATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQD-------- 137 (617)
T ss_pred ceeheecccCCC---C-cc-cccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECC--------
Confidence 1 111111000 0 00 01124578888999999988887 6888765 67787766446788999876
Q ss_pred cccccccceEEEcCEEEEcCCCCC
Q 006539 262 KKENFQRGVELRGRITLLAEGCRG 285 (641)
Q Consensus 262 ~~~~~~~g~~i~a~~vV~A~G~~s 285 (641)
|..+.|+.||+|+|.+.
T Consensus 138 -------G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 138 -------GLKFRAKAVIITTGTFL 154 (617)
T ss_pred -------CCEEECCEEEEccCccc
Confidence 67899999999999995
No 154
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.06 E-value=8.2e-10 Score=123.67 Aligned_cols=71 Identities=25% Similarity=0.426 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcC-EEEEcCCCCCchhHH
Q 006539 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGR-ITLLAEGCRGSLSEK 290 (641)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~-~vV~A~G~~s~vr~~ 290 (641)
..+...|.+.+++.|++|+.++.|++++.++ ++|++|.... +|+ ...++|+ .||+|+|..+. .++
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~-g~v~Gv~~~~-----~g~-------~~~i~A~~aVIlAtGG~~~-N~e 273 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVED-GRVVGVVVVR-----DGR-------EVLIRARRGVLLASGGFGH-NAE 273 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEEEE-----CCe-------EEEEEecceEEEecCCccC-CHH
Confidence 4567788888999999999999999999875 7898988743 222 2568885 79999999987 345
Q ss_pred HHHHcC
Q 006539 291 LIKNFK 296 (641)
Q Consensus 291 l~~~~~ 296 (641)
|.+.+.
T Consensus 274 m~~~~~ 279 (557)
T PRK12844 274 MRKRYQ 279 (557)
T ss_pred HHHHhc
Confidence 555544
No 155
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.06 E-value=1.4e-09 Score=115.86 Aligned_cols=151 Identities=22% Similarity=0.296 Sum_probs=89.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCC-CCccccccccCh-----HHH-------HHhhhhhhhc-
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV-GAHIISGNVFEP-----RAL-------NELLPQWKQE- 173 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~-g~~~~~g~~i~~-----~~l-------~~l~~~~~~~- 173 (641)
+||+|||||++|+++|+.|++. |.+|+|+|+.... |.+..+++.+.+ ..+ .++++.+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~------G~~V~vle~~~~~~gaS~~~~G~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 74 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR------GLSVTVIERSSRAQGASVRNFGQVWPTGQAPGPAWDRARRSREIWLELAAKA 74 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCCCCCCcccccCceEEecCCCCccHHHHHHHHHHHHHHHHHHc
Confidence 5999999999999999999998 9999999998642 333344444321 111 1112222111
Q ss_pred CCCee------eeccC---------------c--cEEEeecCc-cccCCC---C-----CCCCCcEEeeHHHHHHHHHHH
Q 006539 174 EAPIR------VPVSS---------------D--KFWFLTKDR-AFSLPS---P-----FSNRGNYVISLSQLVRWLGGK 221 (641)
Q Consensus 174 ~~~~~------~~~~~---------------~--~~~~~~~~~-~~~~~~---~-----~~~~~~~~v~~~~l~~~L~~~ 221 (641)
...+. ..... . .+.+++... .-.+|. . ........++...+...|.+.
T Consensus 75 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~g~v~p~~~~~~l~~~ 154 (365)
T TIGR03364 75 GIWVRENGSLHLARTEEELAVLEEFAATREPAEYRVELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIPALAAY 154 (365)
T ss_pred CCCEEeCCEEEEeCCHHHHHHHHHHHHhhhhcCCCeEEECHHHHHHhCCCCCccCceEEEEcCCCeeECHHHHHHHHHHH
Confidence 11110 00000 0 011221100 000110 0 111224457888999999988
Q ss_pred HHHc-CCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 222 AEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 222 a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
+.+. |++++.+++|+++.. + .|.+.+ | +++||.||+|+|.++.
T Consensus 155 ~~~~~Gv~i~~~t~V~~i~~---~---~v~t~~---------------g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 155 LAEQHGVEFHWNTAVTSVET---G---TVRTSR---------------G-DVHADQVFVCPGADFE 198 (365)
T ss_pred HHhcCCCEEEeCCeEEEEec---C---eEEeCC---------------C-cEEeCEEEECCCCChh
Confidence 8775 999999999999853 2 466654 3 5789999999999863
No 156
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.06 E-value=4.5e-10 Score=123.66 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=87.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCC--------CCCCccccccccChHHHHHhhhhhhhcCCCee
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA--------EVGAHIISGNVFEPRALNELLPQWKQEEAPIR 178 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~--------~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~ 178 (641)
+||||||||||+|+.+|+.|++. |++|+|||+.. .+||+|++-||++++.|...-.........
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~------G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~-- 73 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY------GAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDS-- 73 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC------CCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhh--
Confidence 58999999999999999999999 99999999741 479999999999999876543222211000
Q ss_pred eeccCccEEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCcccccc
Q 006539 179 VPVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (641)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~ 258 (641)
...++.+ .....++++..+..... . ...+.+...+.++..||+++.|... +.+.+.+ .|...+
T Consensus 74 ---~~~g~~~-~~~~~~d~~~~~~~~~~-~--v~~~~~~~~~~~~~~~v~~i~G~a~----f~~~~~v-~v~~~~----- 136 (484)
T TIGR01438 74 ---RNYGWNV-EETVKHDWNRLSEAVQN-H--IGSLNWGYRVALREKKVNYENAYAE----FVDKHRI-KATNKK----- 136 (484)
T ss_pred ---hhcCccc-CCCcccCHHHHHHHHHH-H--HHHHHHHHHHHHhhCCcEEEEEEEE----EcCCCEE-EEeccC-----
Confidence 0000000 00001111100000000 0 0122233334456689999988764 3333433 343222
Q ss_pred CCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 259 DGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 259 ~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
|+ +.++++|.||+|+|+.+.
T Consensus 137 -g~-------~~~~~~d~lVIATGs~p~ 156 (484)
T TIGR01438 137 -GK-------EKIYSAERFLIATGERPR 156 (484)
T ss_pred -CC-------ceEEEeCEEEEecCCCCC
Confidence 21 257999999999998764
No 157
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.06 E-value=2.4e-09 Score=121.72 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCch
Q 006539 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~v 287 (641)
...+...|.+.+.+.||+|+.++.++++..++ |++.||...+ .++|+. ..+.|+.||+|||..+.+
T Consensus 157 G~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g~v~Gv~~~~---~~~G~~-------~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 157 GHTMLYAVDNEAIKLGVPVHDRKEAIALIHDG-KRCYGAVVRC---LITGEL-------RAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeEEEEEEEEEC-CEEEEEEEEE---cCCCcE-------EEEEcCeEEECCCcccCC
Confidence 34566778888889999999999999999765 7888887653 123332 567899999999998864
No 158
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.06 E-value=4.9e-09 Score=117.52 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcC-EEEEcCCCCCchhHHH
Q 006539 213 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGR-ITLLAEGCRGSLSEKL 291 (641)
Q Consensus 213 ~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~-~vV~A~G~~s~vr~~l 291 (641)
.+...|.+.+++.|++|++++.+++++.++ ++|++|.... +|+ ...++|+ .||+|+|.... .+.|
T Consensus 209 ~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~-g~v~Gv~~~~-----~g~-------~~~i~A~~~VIlAtGG~~~-n~~m 274 (557)
T PRK07843 209 ALAAGLRIGLQRAGVPVLLNTPLTDLYVED-GRVTGVHAAE-----SGE-------PQLIRARRGVILASGGFEH-NEQM 274 (557)
T ss_pred HHHHHHHHHHHcCCCEEEeCCEEEEEEEeC-CEEEEEEEEe-----CCc-------EEEEEeceeEEEccCCcCc-CHHH
Confidence 356667778888999999999999998864 7888887643 222 2578896 69999999887 3455
Q ss_pred HHHcC
Q 006539 292 IKNFK 296 (641)
Q Consensus 292 ~~~~~ 296 (641)
.+.+.
T Consensus 275 ~~~~~ 279 (557)
T PRK07843 275 RAKYQ 279 (557)
T ss_pred HHHhc
Confidence 55443
No 159
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.06 E-value=2.6e-09 Score=117.32 Aligned_cols=156 Identities=23% Similarity=0.279 Sum_probs=89.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccC-----hHHHHHhhhhhhhcCC----C--
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFE-----PRALNELLPQWKQEEA----P-- 176 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~-----~~~l~~l~~~~~~~~~----~-- 176 (641)
+||||||||+|||+||+.|++. |++|+|+||....+.+....+.+. .+..+..+.++..... +
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~------G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~ 75 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKK------GFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEV 75 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHH
Confidence 6999999999999999999998 999999999865433333333221 1111111111100000 0
Q ss_pred eeeec--cCccEEEeecCccccCCCC----CCCC-CcEE---eeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcE
Q 006539 177 IRVPV--SSDKFWFLTKDRAFSLPSP----FSNR-GNYV---ISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKV 246 (641)
Q Consensus 177 ~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~-~~~~---v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v 246 (641)
+...+ ..+.+.++.. .++.+... .... ..+. .....+.+.|.+.+++.||+++.+ .++++..++ +++
T Consensus 76 v~~~~~~~~~~i~~L~~-~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~-g~v 152 (466)
T PRK08401 76 VWNVISKSSEAYDFLTS-LGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKN-GKA 152 (466)
T ss_pred HHHHHHHHHHHHHHHHH-cCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC-CEE
Confidence 00000 0001111110 11111100 0000 0000 123578888999999999999876 788887654 677
Q ss_pred EEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCchh
Q 006539 247 IGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLS 288 (641)
Q Consensus 247 ~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr 288 (641)
++|.+. +..+.+|.||+|+|.++.+.
T Consensus 153 ~Gv~~~----------------g~~i~a~~VVLATGG~~~~~ 178 (466)
T PRK08401 153 YGVFLD----------------GELLKFDATVIATGGFSGLF 178 (466)
T ss_pred EEEEEC----------------CEEEEeCeEEECCCcCcCCC
Confidence 788763 36789999999999998753
No 160
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.06 E-value=6.2e-10 Score=122.50 Aligned_cols=52 Identities=35% Similarity=0.609 Sum_probs=48.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHh
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l 166 (641)
||||||||||||+++|+.|+++ |++|+||||.. +||+|++-+|++.+.|.+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~------g~~v~lie~~~-~GG~c~n~gciPsk~l~~~ 52 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL------GASVAMVERGP-LGGTCVNVGCVPSKMLLRA 52 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCc-ccCCeeeecEEccHHHHHH
Confidence 7999999999999999999999 99999999975 8999999999999988654
No 161
>PRK14694 putative mercuric reductase; Provisional
Probab=99.05 E-value=2.2e-09 Score=118.16 Aligned_cols=55 Identities=15% Similarity=0.388 Sum_probs=49.8
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHh
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l 166 (641)
...|||+||||||||+++|+.|++. |++|+|||+. .+||+|.+.||++.+.+.+.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~------g~~v~lie~~-~~GGtc~n~GciPsk~l~~~ 58 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATER------GARVTLIERG-TIGGTCVNIGCVPSKIMIRA 58 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhC------CCcEEEEEcc-ccccceecCCccccHHHHHH
Confidence 3479999999999999999999999 9999999996 58999999999999987544
No 162
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.05 E-value=1.2e-09 Score=121.28 Aligned_cols=92 Identities=13% Similarity=0.171 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHH-cCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcC-EEEEcCCCCCchhHH
Q 006539 213 QLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGR-ITLLAEGCRGSLSEK 290 (641)
Q Consensus 213 ~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~-~vV~A~G~~s~vr~~ 290 (641)
.+...|.+.+.+ .|++|++++++++++.++ ++|++|.... +|+ ...++|+ .||+|+|..+.. +.
T Consensus 174 ~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~-g~v~Gv~~~~-----~g~-------~~~i~A~k~VIlAtGG~~~n-~~ 239 (513)
T PRK12837 174 ALIGRFLAALARFPNARLRLNTPLVELVVED-GRVVGAVVER-----GGE-------RRRVRARRGVLLAAGGFEQN-DD 239 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCEEEEEEecC-CEEEEEEEEE-----CCc-------EEEEEeCceEEEeCCCccCC-HH
Confidence 455556666655 489999999999998874 7888987643 232 2578896 799999999874 45
Q ss_pred HHHHcCCCc---ccccCccceeeEEEEEEee
Q 006539 291 LIKNFKLRE---KSHAQHQTYALGIKEVWEI 318 (641)
Q Consensus 291 l~~~~~~~~---~~~~~~~~~~~g~~~~~~~ 318 (641)
|.+.+..+. .....+..+|.|++....+
T Consensus 240 m~~~~~~~~~~~~~~~~~~~tGDGi~ma~~a 270 (513)
T PRK12837 240 MRARYGVPGSARDTMGGPGNTGLAHQAAIAV 270 (513)
T ss_pred HHHHhccccccCCCCCCCCCCcHHHHHHHHc
Confidence 665564210 0122344556666544333
No 163
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.05 E-value=8.4e-10 Score=123.13 Aligned_cols=163 Identities=20% Similarity=0.183 Sum_probs=91.7
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc-ccccccC-----hHHHHHhhhhhhhcCCC--
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE-----PRALNELLPQWKQEEAP-- 176 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i~-----~~~l~~l~~~~~~~~~~-- 176 (641)
+.++||||||+|.|||+||+.++ . |.+|+||||....+++. .+++.+. ....+..+.++......
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~------G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~ 79 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-S------HLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLC 79 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-c------CCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCC
Confidence 35799999999999999999985 5 99999999998766644 3333221 11111111111100000
Q ss_pred --------------eeeeccCccEEEeecCccccC-CCCCCCC-CcEEe---eHHHHHHHHHHHHHH-cCCEEecCceEE
Q 006539 177 --------------IRVPVSSDKFWFLTKDRAFSL-PSPFSNR-GNYVI---SLSQLVRWLGGKAEE-LGVEIYPGFAAS 236 (641)
Q Consensus 177 --------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~v---~~~~l~~~L~~~a~~-~Gv~i~~g~~v~ 236 (641)
........++.|......+.. +...... ..+.. ....+...|.+.+++ .||+|+.++.++
T Consensus 80 d~~lv~~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~ 159 (553)
T PRK07395 80 DPEAVRFLVEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALAL 159 (553)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChh
Confidence 000000111111110000000 0000000 01111 235677888888875 489999999999
Q ss_pred EEEEcC-CCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 237 EILYDA-DNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 237 ~i~~~~-~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
++..++ +|+|.||...+ +|.. ..+.|+.||+|+|..+.
T Consensus 160 ~Li~~~~~g~v~Gv~~~~-----~g~~-------~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 160 SLWLEPETGRCQGISLLY-----QGQI-------TWLRAGAVILATGGGGQ 198 (553)
T ss_pred hheecCCCCEEEEEEEEE-----CCeE-------EEEEcCEEEEcCCCCcc
Confidence 998874 47888887643 2221 45899999999999764
No 164
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.05 E-value=1.4e-09 Score=112.54 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=45.8
Q ss_pred EEecCCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEEC
Q 006539 562 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 629 (641)
Q Consensus 562 l~~~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~ 629 (641)
+...|.++|..|. -|.. ||.++++.+ +..+|...|.+||+|..+||.+||+..+
T Consensus 555 ~a~vde~~C~gC~------~C~~-Cpf~ais~~-------ka~v~~~~C~gCG~C~~aCp~gai~~~~ 608 (622)
T COG1148 555 VATVDEDKCTGCG------ICAE-CPFGAISVD-------KAEVNPLRCKGCGICSAACPSGAIDLAG 608 (622)
T ss_pred ccccchhhhcCCc------ceee-CCCCceecc-------ccccChhhhCcccchhhhCCcccchhcc
Confidence 3345889999986 7888 999999964 3788999999999999999999998653
No 165
>PRK13748 putative mercuric reductase; Provisional
Probab=99.05 E-value=1.8e-09 Score=121.83 Aligned_cols=54 Identities=19% Similarity=0.409 Sum_probs=49.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHh
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l 166 (641)
.+||||||||||||+++|+.|++. |++|+|||+. .+||+|++-||++.+.|.+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~------G~~v~lie~~-~~GG~c~n~gciPsk~l~~~ 150 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQ------GARVTLIERG-TIGGTCVNVGCVPSKIMIRA 150 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC------CCeEEEEecC-cceeeccccCccccHHHHHH
Confidence 369999999999999999999999 9999999997 78999999999999987544
No 166
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.05 E-value=2.9e-09 Score=117.73 Aligned_cols=161 Identities=20% Similarity=0.252 Sum_probs=92.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc-ccccccC----h-HHHHHhhhhhhhcCCCe---
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE----P-RALNELLPQWKQEEAPI--- 177 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i~----~-~~l~~l~~~~~~~~~~~--- 177 (641)
++||||||||+|||+||+.+++. |. |+||||....+++. .+++.+. + ...+..+.++.......
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~------G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~ 74 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQ------GR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDR 74 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhC------CC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCH
Confidence 57999999999999999999998 87 99999997655543 2222221 0 11111111111100000
Q ss_pred -------------eeeccCccEEEee-cCccccCCCCCCCCCcEEe-----eHHHHHHHHHHHHHH-cCCEEecCceEEE
Q 006539 178 -------------RVPVSSDKFWFLT-KDRAFSLPSPFSNRGNYVI-----SLSQLVRWLGGKAEE-LGVEIYPGFAASE 237 (641)
Q Consensus 178 -------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v-----~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~ 237 (641)
.......++.|.. ....+............++ ....+.+.|.+.+++ .||+|+.++.+++
T Consensus 75 ~~v~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~ 154 (488)
T TIGR00551 75 EAVEFVVSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALD 154 (488)
T ss_pred HHHHHHHHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeee
Confidence 0000001111110 0000000000000001111 245788899999887 6899999999999
Q ss_pred EEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCch
Q 006539 238 ILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 238 i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~v 287 (641)
+..++ +.+.+|.+.+. +. ...+.++.||+|+|.++.+
T Consensus 155 l~~~~-g~v~Gv~~~~~-----~~-------~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 155 LLIET-GRVVGVWVWNR-----ET-------VETCHADAVVLATGGAGKL 191 (488)
T ss_pred eeccC-CEEEEEEEEEC-----Cc-------EEEEEcCEEEECCCcccCC
Confidence 98764 67778876541 11 1578999999999999874
No 167
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.04 E-value=2.6e-09 Score=120.46 Aligned_cols=59 Identities=25% Similarity=0.355 Sum_probs=52.1
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCC-CCCCCccccccccChHHHHHhhhh
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKG-AEVGAHIISGNVFEPRALNELLPQ 169 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~-~~~g~~~~~g~~i~~~~l~~l~~~ 169 (641)
..+|||+|||+||+|+++|+.++++ |++|+|||+. ..+||+|++.||++++.|......
T Consensus 114 ~~~yDviVIG~G~gG~~aA~~aa~~------G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~ 173 (659)
T PTZ00153 114 DEEYDVGIIGCGVGGHAAAINAMER------GLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGK 173 (659)
T ss_pred cccCCEEEECCCHHHHHHHHHHHHC------CCcEEEEeCCCCccccceeEeCCcchHHHHHHHHH
Confidence 3479999999999999999999999 9999999975 368999999999999998665433
No 168
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.04 E-value=4.3e-09 Score=104.67 Aligned_cols=161 Identities=22% Similarity=0.268 Sum_probs=102.3
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcccccc---ccCh--------HHHHHhhhhhhh
Q 006539 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGN---VFEP--------RALNELLPQWKQ 172 (641)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~---~i~~--------~~l~~l~~~~~~ 172 (641)
+.+..||+|||||+-|+++|+.|++. |.+++++|+.+.+-....+-+ .|.+ +...+-+..|..
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~------g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~ 77 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKR------GDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRN 77 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhc------CCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHh
Confidence 34678999999999999999999999 999999999875422211111 1222 112333555655
Q ss_pred cCCCeeeeccCccEEEee---------------------------cCccccCC------CC---CCCCCcEEeeHHHHHH
Q 006539 173 EEAPIRVPVSSDKFWFLT---------------------------KDRAFSLP------SP---FSNRGNYVISLSQLVR 216 (641)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~------~~---~~~~~~~~v~~~~l~~ 216 (641)
........+......+.. +...-.+| .. ..+..+.++...+-.+
T Consensus 78 ~~~~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk 157 (399)
T KOG2820|consen 78 LPEESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLK 157 (399)
T ss_pred ChhhhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHH
Confidence 422111111111111000 00000122 11 1122244577788889
Q ss_pred HHHHHHHHcCCEEecCceEEEEEEc-CCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCC
Q 006539 217 WLGGKAEELGVEIYPGFAASEILYD-ADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (641)
Q Consensus 217 ~L~~~a~~~Gv~i~~g~~v~~i~~~-~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s 285 (641)
.|...+++.|+.++.|..|+.+.+. +++..+.|.|.+ |..+.||.+|++.|+|-
T Consensus 158 ~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~---------------gs~Y~akkiI~t~GaWi 212 (399)
T KOG2820|consen 158 ALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTD---------------GSIYHAKKIIFTVGAWI 212 (399)
T ss_pred HHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEecc---------------CCeeecceEEEEecHHH
Confidence 9999999999999999999988754 345566888887 67899999999999984
No 169
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.03 E-value=1.8e-09 Score=120.18 Aligned_cols=115 Identities=26% Similarity=0.336 Sum_probs=84.2
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCc
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (641)
...|||+||||||||+++|+.|++. |++|+|+|+. +|+.+... . .+.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~------G~~v~li~~~--~GG~~~~~-----~-------~~~------------- 255 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARK------GIRTGIVAER--FGGQVLDT-----M-------GIE------------- 255 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEecC--CCCeeecc-----C-------ccc-------------
Confidence 4579999999999999999999999 9999999864 56532100 0 000
Q ss_pred cEEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccc
Q 006539 185 KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKE 264 (641)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~ 264 (641)
+++.. ......++.+.|.+.+++.|++++.+++|+++..+++. ..|.+.+
T Consensus 256 -----------~~~~~------~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~--~~V~~~~----------- 305 (517)
T PRK15317 256 -----------NFISV------PETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGL--IEVELAN----------- 305 (517)
T ss_pred -----------ccCCC------CCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCe--EEEEECC-----------
Confidence 00000 01235688889999999999999999999999876532 3466654
Q ss_pred ccccceEEEcCEEEEcCCCCCc
Q 006539 265 NFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 265 ~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
|.++.+|.||+|+|.++.
T Consensus 306 ----g~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 306 ----GAVLKAKTVILATGARWR 323 (517)
T ss_pred ----CCEEEcCEEEECCCCCcC
Confidence 568999999999999763
No 170
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.03 E-value=1.9e-09 Score=121.43 Aligned_cols=72 Identities=21% Similarity=0.189 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEc-CEEEEcCCCCCchhH
Q 006539 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRG-RITLLAEGCRGSLSE 289 (641)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a-~~vV~A~G~~s~vr~ 289 (641)
...+...|.+.+++.||+|+.++.++++..++ ++|++|.+.+ +|+ ...+.+ +.||+|+|..+.. +
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~-g~V~GV~~~~-----~g~-------~~~i~A~~~VVlAtGg~~~n-~ 285 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLETDH-GRVIGATVVQ-----GGV-------RRRIRARGGVVLATGGFNRH-P 285 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-CEEEEEEEec-----CCe-------EEEEEccceEEECCCCcccC-H
Confidence 34577888899999999999999999998764 7888887753 121 146776 7899999999985 4
Q ss_pred HHHHHcC
Q 006539 290 KLIKNFK 296 (641)
Q Consensus 290 ~l~~~~~ 296 (641)
+|.+.+.
T Consensus 286 em~~~~~ 292 (578)
T PRK12843 286 QLRRELL 292 (578)
T ss_pred HHHHHhC
Confidence 5555553
No 171
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.02 E-value=5.6e-09 Score=114.00 Aligned_cols=79 Identities=13% Similarity=0.139 Sum_probs=56.3
Q ss_pred cEEeeHHHHHHHHHHHHHH-cCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCC
Q 006539 206 NYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (641)
Q Consensus 206 ~~~v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~ 284 (641)
...++...+.+.|.+.+.+ .|++++++++|+++..++++.+ .|.+.+. .+|+ ..+++||+||+|.|.+
T Consensus 178 ~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t---~~g~-------~~~i~Ad~VV~AAGaw 246 (497)
T PRK13339 178 GTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDR---NTGE-------KREQVADYVFIGAGGG 246 (497)
T ss_pred ceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEec---CCCc-------eEEEEcCEEEECCCcc
Confidence 4568889999999998865 4899999999999987733433 3432110 0010 1368999999999999
Q ss_pred CchhHHHHHHcCCC
Q 006539 285 GSLSEKLIKNFKLR 298 (641)
Q Consensus 285 s~vr~~l~~~~~~~ 298 (641)
+ ..+.+.+|+.
T Consensus 247 S---~~La~~~Gi~ 257 (497)
T PRK13339 247 A---IPLLQKSGIP 257 (497)
T ss_pred h---HHHHHHcCCC
Confidence 7 4666777766
No 172
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.02 E-value=1.9e-09 Score=130.11 Aligned_cols=178 Identities=20% Similarity=0.264 Sum_probs=99.3
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccc-cccccC---hHH---------HHHhhhh-
Q 006539 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE---PRA---------LNELLPQ- 169 (641)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~-~g~~i~---~~~---------l~~l~~~- 169 (641)
++.++||||||+|.||++||+.+++. |.+|+|+||.+..|++.. +++.+. .+. .+.+..+
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~------Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~ 479 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASC------GAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDT 479 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHH
Confidence 35679999999999999999999998 999999999988877642 333221 000 0001111
Q ss_pred hhhc----CCC--eeeec--cCccEEEeecCccccC-----------CCCCC---CCCcEEe-eHHHHHHHHHHHHHH--
Q 006539 170 WKQE----EAP--IRVPV--SSDKFWFLTKDRAFSL-----------PSPFS---NRGNYVI-SLSQLVRWLGGKAEE-- 224 (641)
Q Consensus 170 ~~~~----~~~--~~~~~--~~~~~~~~~~~~~~~~-----------~~~~~---~~~~~~v-~~~~l~~~L~~~a~~-- 224 (641)
+... ..+ +...+ ..+.+.|+.+ .++.+ +.... ...+... ....+.+.|.+.+++
T Consensus 480 ~~~~~~~~~d~~lv~~~~~~s~e~idwL~~-~Gv~f~~~~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~ 558 (1167)
T PTZ00306 480 HLSGKGGHCDPGLVKTLSVKSADAISWLSS-LGVPLTVLSQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKL 558 (1167)
T ss_pred HHhccCCCCCHHHHHHHHHhhHHHHHHHHH-cCCCceeeeccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhc
Confidence 0000 000 00000 0000111110 00100 00000 0000001 124566777777765
Q ss_pred -cCCEEecCceEEEEEEcCC----C----cEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCchhH--HHHH
Q 006539 225 -LGVEIYPGFAASEILYDAD----N----KVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSE--KLIK 293 (641)
Q Consensus 225 -~Gv~i~~g~~v~~i~~~~~----g----~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~--~l~~ 293 (641)
.||+|++++++++++.+++ | +|+||...+.+ +.+|+. ..+.||.||+|+|..+.... .|.+
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~-~~~g~~-------~~i~AkaVILATGGf~~N~e~~~m~~ 630 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQAS-DASGQV-------MDLLADAVILATGGFSNDHTPNSLLR 630 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecc-cCCCcE-------EEEEeceEEEecCCcccCccHHHHHH
Confidence 4899999999999998642 2 78899876410 013432 57899999999999987432 4544
Q ss_pred HcC
Q 006539 294 NFK 296 (641)
Q Consensus 294 ~~~ 296 (641)
.+.
T Consensus 631 ~y~ 633 (1167)
T PTZ00306 631 EYA 633 (1167)
T ss_pred HhC
Confidence 443
No 173
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.02 E-value=4.3e-09 Score=118.60 Aligned_cols=66 Identities=30% Similarity=0.339 Sum_probs=51.8
Q ss_pred eHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEc-CEEEEcCCCCCchh
Q 006539 210 SLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRG-RITLLAEGCRGSLS 288 (641)
Q Consensus 210 ~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a-~~vV~A~G~~s~vr 288 (641)
....|.+.|.+.+++.||+|++++.|++++.++ ++|++|...+ ++. ...+++ |.||+|+|.++.-.
T Consensus 215 ~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~-g~v~GV~~~~-----~~~-------~~~i~a~k~VVlAtGg~~~n~ 281 (581)
T PRK06134 215 NGNALVARLLKSAEDLGVRIWESAPARELLRED-GRVAGAVVET-----PGG-------LQEIRARKGVVLAAGGFPHDP 281 (581)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEEEEEEEE-----CCc-------EEEEEeCCEEEEcCCCcccCH
Confidence 345677889999999999999999999998764 7888887643 111 146889 99999999998733
No 174
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.02 E-value=2.2e-10 Score=113.65 Aligned_cols=149 Identities=17% Similarity=0.304 Sum_probs=99.7
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHh---hhhhhhcCCCeeee
Q 006539 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL---LPQWKQEEAPIRVP 180 (641)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l---~~~~~~~~~~~~~~ 180 (641)
...+||.+|||||.+|+++|.+++.. |.+|.|+|..-.+|++|++.||++.+.|-.. ...+..
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~~------GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~d-------- 82 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAASH------GAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMED-------- 82 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHhc------CceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhh--------
Confidence 34589999999999999999999999 9999999988789999999999987765111 001110
Q ss_pred ccCccEEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCC
Q 006539 181 VSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (641)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g 260 (641)
..+.-+.......++|+....++..|+.++..+ ..+.+.+.+|+++.|..- +.+++.| .|+..| |
T Consensus 83 -a~~yG~~~~~~~~fdW~~ik~krdayi~RLngI---Y~~~L~k~~V~~i~G~a~----f~~~~~v-~V~~~d------~ 147 (478)
T KOG0405|consen 83 -AKDYGFPINEEGSFDWKVIKQKRDAYILRLNGI---YKRNLAKAAVKLIEGRAR----FVSPGEV-EVEVND------G 147 (478)
T ss_pred -hhhcCCccccccCCcHHHHHhhhhHHHHHHHHH---HHhhccccceeEEeeeEE----EcCCCce-EEEecC------C
Confidence 011111122334444444444455565444444 344446678999998765 5555655 677665 2
Q ss_pred CcccccccceEEEcCEEEEcCCCCCchh
Q 006539 261 SKKENFQRGVELRGRITLLAEGCRGSLS 288 (641)
Q Consensus 261 ~~~~~~~~g~~i~a~~vV~A~G~~s~vr 288 (641)
+ ...++|+.+++|+|.++.+-
T Consensus 148 ~-------~~~Ytak~iLIAtGg~p~~P 168 (478)
T KOG0405|consen 148 T-------KIVYTAKHILIATGGRPIIP 168 (478)
T ss_pred e-------eEEEecceEEEEeCCccCCC
Confidence 1 14589999999999988653
No 175
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.01 E-value=3.9e-09 Score=118.97 Aligned_cols=65 Identities=28% Similarity=0.351 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcC-EEEEcCCCCCchhH
Q 006539 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGR-ITLLAEGCRGSLSE 289 (641)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~-~vV~A~G~~s~vr~ 289 (641)
..+.+.|.+.+++.|++|+.++.|+++..++ ++|++|.+.+. ++ ...+.++ .||+|+|.++.-..
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~-g~V~GV~~~~~----~~--------~~~i~a~k~VVlAtGg~~~n~~ 279 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEG-GRVVGARVIDA----GG--------ERRITARRGVVLACGGFSHDLA 279 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-CEEEEEEEEcC----Cc--------eEEEEeCCEEEEcCCCccchHH
Confidence 4577778888899999999999999998775 78888877541 11 1357785 79999999986433
No 176
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.01 E-value=6.5e-09 Score=116.10 Aligned_cols=166 Identities=18% Similarity=0.255 Sum_probs=92.6
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc-ccccccC----h-HHHHHhhhhhhhcCC---
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE----P-RALNELLPQWKQEEA--- 175 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i~----~-~~l~~l~~~~~~~~~--- 175 (641)
..++||||||+|.|||+||+.+++ +.+|+||||....+++. .+++.+. + ...+..+.+......
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~-------~~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~ 78 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAE-------HRRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLC 78 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHH-------CCCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCC
Confidence 357899999999999999999986 57999999998766543 3333321 1 111111111100000
Q ss_pred -C--ee----------eeccCccEEEeecCc-----cccCCCCCCCCCcEEe-----eHHHHHHHHHHHHHHc-CCEEec
Q 006539 176 -P--IR----------VPVSSDKFWFLTKDR-----AFSLPSPFSNRGNYVI-----SLSQLVRWLGGKAEEL-GVEIYP 231 (641)
Q Consensus 176 -~--~~----------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v-----~~~~l~~~L~~~a~~~-Gv~i~~ 231 (641)
+ +. ......++.|..... .+............++ ....+...|.+++.+. ||+|+.
T Consensus 79 d~~~v~~~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~ 158 (536)
T PRK09077 79 DEDAVRFIAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLE 158 (536)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEe
Confidence 0 00 000000111100000 0000000000000111 2356778888888765 899999
Q ss_pred CceEEEEEEcC-----CCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCch
Q 006539 232 GFAASEILYDA-----DNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 232 g~~v~~i~~~~-----~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~v 287 (641)
++.++++..++ ++++++|...+. .+|+. ..+.+|.||+|+|..+.+
T Consensus 159 ~~~v~~Li~~~~~~~~~g~v~Gv~~~~~---~~g~~-------~~i~Ak~VVlATGG~~~~ 209 (536)
T PRK09077 159 RHNAIDLITSDKLGLPGRRVVGAYVLNR---NKERV-------ETIRAKFVVLATGGASKV 209 (536)
T ss_pred eEEeeeeeecccccCCCCEEEEEEEEEC---CCCcE-------EEEecCeEEECCCCCCCC
Confidence 99999998754 377888886531 12321 578999999999999864
No 177
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.00 E-value=4e-09 Score=116.14 Aligned_cols=51 Identities=45% Similarity=0.621 Sum_probs=47.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHH
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALN 164 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~ 164 (641)
+|||+||||||||++||+.|++. |++|+|||+. .+||+|.+-+|++.+.+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~------G~~V~lie~~-~~GG~c~~~gciPsk~l~ 54 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQL------GLKTAVVEKK-YWGGVCLNVGCIPSKALL 54 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC------CCeEEEEecC-CCCCceecCCccccHHHH
Confidence 59999999999999999999999 9999999985 689999999999987764
No 178
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.99 E-value=7.7e-10 Score=121.08 Aligned_cols=51 Identities=22% Similarity=0.407 Sum_probs=44.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHh
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l 166 (641)
+|||||||+||+|..+|. ++. |.+|+|||+. .+||+|++-||++++.|.+.
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~------g~~V~lie~~-~~GGtC~n~GCiPsK~l~~~ 52 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFA------DKRIAIVEKG-TFGGTCLNVGCIPTKMFVYA 52 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHC------CCeEEEEeCC-CCCCeeeccCccchHHHHHH
Confidence 599999999999999864 345 9999999985 58999999999999998644
No 179
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.99 E-value=4.3e-09 Score=116.70 Aligned_cols=160 Identities=18% Similarity=0.226 Sum_probs=90.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc-ccccccC-----hHHHHHhhhhhhhcCCC----
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE-----PRALNELLPQWKQEEAP---- 176 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i~-----~~~l~~l~~~~~~~~~~---- 176 (641)
++||||||+|.|||+||+.+++ |.+|+||||.+..++++ .+++.+. ....+..+.++......
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-------g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~ 75 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-------EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNE 75 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-------CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCH
Confidence 6899999999999999999864 89999999998766654 2333331 11111111111110000
Q ss_pred --ee----------eeccCccEEEee-cCccccCCCCCCCCCcEE------eeHHHHHHHHHHHHHHcCCEEecCceEEE
Q 006539 177 --IR----------VPVSSDKFWFLT-KDRAFSLPSPFSNRGNYV------ISLSQLVRWLGGKAEELGVEIYPGFAASE 237 (641)
Q Consensus 177 --~~----------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~ 237 (641)
+. ......++.|.. ....+............+ .....+.+.|.+.+. .||+|+.++.+++
T Consensus 76 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~~~v~~ 154 (510)
T PRK08071 76 RAVRYLVEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVTVVEQEMVID 154 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCEEEECeEhhh
Confidence 00 000001111110 000000000000000001 123457778877775 6899999999999
Q ss_pred EEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 238 ILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 238 i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
+..++ +++.+|.+.+ .+|+. ..+.||.||+|+|..+.
T Consensus 155 Li~~~-g~v~Gv~~~~----~~g~~-------~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 155 LIIEN-GRCIGVLTKD----SEGKL-------KRYYADYVVLASGGCGG 191 (510)
T ss_pred eeecC-CEEEEEEEEE----CCCcE-------EEEEcCeEEEecCCCcc
Confidence 98764 7788887654 22321 47899999999999875
No 180
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.99 E-value=3.9e-09 Score=116.22 Aligned_cols=51 Identities=45% Similarity=0.695 Sum_probs=47.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHH
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALN 164 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~ 164 (641)
.|||+||||||||+++|+.|++. |++|+|||+ ..+||++.+-+|++.+.+.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~------G~~v~lie~-~~~GG~~~~~gc~Psk~l~ 51 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQL------GLKVALVEK-EYLGGTCLNVGCIPTKALL 51 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhC------CCeEEEEec-CCCCCceeecCccchHHHH
Confidence 38999999999999999999999 999999999 7789999999999987764
No 181
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.99 E-value=7.6e-09 Score=116.71 Aligned_cols=66 Identities=24% Similarity=0.296 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHH----cCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCch
Q 006539 212 SQLVRWLGGKAEE----LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 212 ~~l~~~L~~~a~~----~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~v 287 (641)
..+...|.+.+++ .||++++++.++++..+++|+|+||...+. .+|+. ..+.||.||+|||..+.+
T Consensus 129 ~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~---~~g~~-------~~i~AkaVVLATGG~g~~ 198 (603)
T TIGR01811 129 QQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNL---VTGEI-------ETHSADAVILATGGYGNV 198 (603)
T ss_pred hHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEEC---CCCcE-------EEEEcCEEEECCCCCcCc
Confidence 4455555555543 379999999999999876678889987541 12321 578999999999998754
No 182
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.97 E-value=3.3e-09 Score=119.03 Aligned_cols=161 Identities=15% Similarity=0.214 Sum_probs=88.9
Q ss_pred cEEEECCCHHHHHHHHHHH----hhchhcCCCCcEEEEcCCCCCCCcccccc--ccChH--------HHHHhhhhhhhcC
Q 006539 109 DVVIVGAGPAGLSAAIRLK----QLCREKNVDLSVCVVEKGAEVGAHIISGN--VFEPR--------ALNELLPQWKQEE 174 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La----~~~~~~~~G~~V~viEk~~~~g~~~~~g~--~i~~~--------~l~~l~~~~~~~~ 174 (641)
||||||||.|||+||+.++ +. |++|+|+||....+.+..++| .+... ..+..+.......
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~------G~~VilieK~~~~~s~s~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~ 74 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKK------GLKIVLVEKANLERSGAVAQGLSAINTYLGTRFGENNAEDYVRYVRTDL 74 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhC------CCeEEEEEccCCCCCCccccccchhhhhhhcccCCCCHHHHHHHHHHhc
Confidence 8999999999999999998 56 999999999875444333333 12110 1111111111100
Q ss_pred CCe------ee--eccCccEEEeecCccccCCCC-----CCCCCcEE--eeHHHHHHHHHHHHHHcCCEEecCceEEEEE
Q 006539 175 API------RV--PVSSDKFWFLTKDRAFSLPSP-----FSNRGNYV--ISLSQLVRWLGGKAEELGVEIYPGFAASEIL 239 (641)
Q Consensus 175 ~~~------~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~ 239 (641)
... .. ....+.+.++.. .++.+... ....+.+. .....+.+.+...+.+.+++++.++.++++.
T Consensus 75 ~gl~d~~lV~~lv~~s~~~i~~L~~-~Gv~F~~~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l~~~~~~i~~~~~v~~Ll 153 (614)
T TIGR02061 75 MGLVREDLIFDMARHVDDSVHLFEE-WGLPLWIKPEDGKYVREGRWQIMIHGESYKPIVAEAAKNALGDIFERIFIVKLL 153 (614)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHH-cCCCceecCCCCccccCCCcccCcCchhHHHHHHHHHHhCCCeEEcccEEEEEE
Confidence 000 00 000011111110 11111100 00000000 1133555666666677778999999999999
Q ss_pred EcCC--CcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 240 YDAD--NKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 240 ~~~~--g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
.+++ |+|+||...+ .++|+. ..+.|+.||+|||.++.
T Consensus 154 ~d~~~~GrV~Gv~~~~---~~~g~~-------~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 154 LDKNTPNRIAGAVGFN---VRANEV-------HVFKAKTVIVAAGGAVN 192 (614)
T ss_pred ecCCCCCeEEEEEEEE---eCCCcE-------EEEECCEEEECCCcccc
Confidence 8653 6888987643 123332 57899999999999874
No 183
>PRK07846 mycothione reductase; Reviewed
Probab=98.97 E-value=1.7e-09 Score=118.24 Aligned_cols=52 Identities=23% Similarity=0.394 Sum_probs=45.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhh
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELL 167 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~ 167 (641)
+||||||||||+|.++|.. +. |.+|+|||+. .+||+|++-||++++.|.+..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~------G~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a 52 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FA------DKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAA 52 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HC------CCeEEEEeCC-CCCCcccCcCcchhHHHHHHH
Confidence 4899999999999998865 35 9999999985 589999999999999886543
No 184
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.96 E-value=5.3e-09 Score=115.11 Aligned_cols=53 Identities=36% Similarity=0.593 Sum_probs=48.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHH
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNE 165 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~ 165 (641)
++||||||||||||+++|+.|++. |++|+|||+ ..+|+.+.+-+|++++.+..
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~------g~~v~lie~-~~~GG~~~~~gc~psk~l~~ 54 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKL------GKKVALIEK-GPLGGTCLNVGCIPSKALIA 54 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC------CCeEEEEeC-CccccceeccceeeHHHHHH
Confidence 469999999999999999999999 999999999 67899999999999887754
No 185
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.96 E-value=2.6e-09 Score=118.20 Aligned_cols=53 Identities=19% Similarity=0.367 Sum_probs=47.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCC--------CCCCccccccccChHHHHH
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA--------EVGAHIISGNVFEPRALNE 165 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~--------~~g~~~~~g~~i~~~~l~~ 165 (641)
.|||+||||||||++||+.|+++ |++|+|||+.. .+||+|++-+|++.+.+..
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~------G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~ 65 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAH------GKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHY 65 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC------CCeEEEEeccCCCCccccccccceeccccccchHHHHH
Confidence 58999999999999999999999 99999999631 4899999999999887643
No 186
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.96 E-value=6.6e-09 Score=115.59 Aligned_cols=114 Identities=25% Similarity=0.377 Sum_probs=82.2
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCc
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (641)
...|||+||||||||++||+.|++. |++|+|+|. .+|+..... . .+..
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~------G~~v~li~~--~~GG~~~~~-----~-------~~~~------------ 257 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARK------GLRTAMVAE--RIGGQVKDT-----V-------GIEN------------ 257 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEec--CCCCccccC-----c-------Cccc------------
Confidence 4469999999999999999999999 999999985 355532100 0 0000
Q ss_pred cEEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccc
Q 006539 185 KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKE 264 (641)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~ 264 (641)
+ ...+ ......+.+.+.+.+++.|++++.+++|+++..+++. ..|.+.+
T Consensus 258 ---~------~~~~---------~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~--~~v~~~~----------- 306 (515)
T TIGR03140 258 ---L------ISVP---------YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGL--IVVTLES----------- 306 (515)
T ss_pred ---c------cccC---------CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCe--EEEEECC-----------
Confidence 0 0000 0234677888888888899999999999999766532 2466554
Q ss_pred ccccceEEEcCEEEEcCCCCC
Q 006539 265 NFQRGVELRGRITLLAEGCRG 285 (641)
Q Consensus 265 ~~~~g~~i~a~~vV~A~G~~s 285 (641)
|..+.+|.+|+|+|++.
T Consensus 307 ----g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 307 ----GEVLKAKSVIVATGARW 323 (515)
T ss_pred ----CCEEEeCEEEECCCCCc
Confidence 56899999999999875
No 187
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.95 E-value=7.7e-09 Score=116.00 Aligned_cols=112 Identities=25% Similarity=0.433 Sum_probs=79.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccE
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (641)
.|||+|||||||||+||+.|++. |++|+|||+. ..|+.+..... +
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~------g~~V~liE~~-~~GG~~~~~~~-----i----------------------- 48 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRA------KLDTLIIEKD-DFGGQITITSE-----V----------------------- 48 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHC------CCCEEEEecC-CCCceEEeccc-----c-----------------------
Confidence 59999999999999999999998 9999999986 45553210000 0
Q ss_pred EEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccccc
Q 006539 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (641)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~ 266 (641)
..+|. .-.+....+.+.+.+++++.|++++ ++.|+++..++ ....|.+.+
T Consensus 49 --------~~~pg------~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~--~~~~V~~~~------------- 98 (555)
T TIGR03143 49 --------VNYPG------ILNTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDG--DIKTIKTAR------------- 98 (555)
T ss_pred --------ccCCC------CcCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecC--CEEEEEecC-------------
Confidence 00010 0012345778888888888999986 66788887654 233466544
Q ss_pred ccceEEEcCEEEEcCCCCCc
Q 006539 267 QRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (641)
..+.++.||+|+|+++.
T Consensus 99 ---g~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 99 ---GDYKTLAVLIATGASPR 115 (555)
T ss_pred ---CEEEEeEEEECCCCccC
Confidence 35789999999999864
No 188
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.94 E-value=5e-09 Score=112.32 Aligned_cols=144 Identities=22% Similarity=0.268 Sum_probs=93.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccC--hHHHHHhhhhhhhcCCCeeeeccC
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFE--PRALNELLPQWKQEEAPIRVPVSS 183 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~--~~~l~~l~~~~~~~~~~~~~~~~~ 183 (641)
+.-+|+|||||||||++|..|.+. |++|+|+||...+||....-.... ... ++..+ ......
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~------g~~v~vfEr~~~iGGlW~y~~~~~~~~ss---~Y~~l-------~tn~pK 68 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLRE------GHEVVVFERTDDIGGLWKYTENVEVVHSS---VYKSL-------RTNLPK 68 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHC------CCCceEEEecCCccceEeecCcccccccc---hhhhh-------hccCCh
Confidence 457899999999999999999999 999999999999998542110000 000 00000 000000
Q ss_pred ccEEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCC--EEecCceEEEEEEcCCCcEEEEEeCccccccCCC
Q 006539 184 DKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGV--EIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (641)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv--~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~ 261 (641)
+-+.+ . ++|.+. +...+..++.++.++|.+.|+..++ .|.++++|..+....+|. +.|.+.+.+ +.
T Consensus 69 e~~~~----~--dfpf~~-~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gk-W~V~~~~~~----~~ 136 (448)
T KOG1399|consen 69 EMMGY----S--DFPFPE-RDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGK-WRVTTKDNG----TQ 136 (448)
T ss_pred hhhcC----C--CCCCcc-cCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCc-eeEEEecCC----cc
Confidence 00100 0 122111 1235567788999999999999874 689999888888776443 467776511 10
Q ss_pred cccccccceEEEcCEEEEcCCCC
Q 006539 262 KKENFQRGVELRGRITLLAEGCR 284 (641)
Q Consensus 262 ~~~~~~~g~~i~a~~vV~A~G~~ 284 (641)
....-+|.||+|+|.+
T Consensus 137 -------~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 137 -------IEEEIFDAVVVCTGHY 152 (448)
T ss_pred -------eeEEEeeEEEEcccCc
Confidence 1466799999999987
No 189
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.94 E-value=2.4e-09 Score=117.52 Aligned_cols=53 Identities=26% Similarity=0.475 Sum_probs=47.9
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhh
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLP 168 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~ 168 (641)
+|+||||||||+++|..|++. |++|+||||.. .||+|++.||++++.+.+...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~------g~~V~lie~~~-~GG~c~n~gciPsk~l~~~a~ 54 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN------GKNVTLIDEAD-LGGTCLNEGCMPTKSLLESAE 54 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC------CCcEEEEECCc-ccccCCCCccccchHHHHHHH
Confidence 699999999999999999999 99999999874 799999999999998865433
No 190
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.93 E-value=5.4e-07 Score=100.39 Aligned_cols=61 Identities=18% Similarity=0.197 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCchh
Q 006539 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLS 288 (641)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr 288 (641)
..+.+.|.+.+++.|++|+.++.|++|..++ +++++|++.+ |.++.||.||.|.+.+..+.
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~V~~~~---------------g~~~~ad~VI~a~~~~~~~~ 279 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEG-GRATAVHLAD---------------GERLDADAVVSNADLHHTYR 279 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeC-CEEEEEEECC---------------CCEEECCEEEECCcHHHHHH
Confidence 6678889999999999999999999998776 5667888876 67899999999998765443
No 191
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.91 E-value=1.2e-08 Score=109.87 Aligned_cols=147 Identities=27% Similarity=0.379 Sum_probs=85.3
Q ss_pred EEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccc-ccc--c-c-ChHHHHHhhhhhhhcCCC----eeeec
Q 006539 111 VIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGN--V-F-EPRALNELLPQWKQEEAP----IRVPV 181 (641)
Q Consensus 111 vIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~-~g~--~-i-~~~~l~~l~~~~~~~~~~----~~~~~ 181 (641)
+|||||+|||++|+.|++. |++|+|+||.+.+|+.+. +|+ + + +.....++...+...... +....
T Consensus 1 vIIGgG~aGl~aAi~aa~~------G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAARE------GLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFS 74 (400)
T ss_pred CEEEEeHHHHHHHHHHHhc------CCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCC
Confidence 6999999999999999998 999999999998876542 221 1 1 111111111111000000 00000
Q ss_pred cCccEEEeecCccccCCCCCCCCCcEEe----eHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccc
Q 006539 182 SSDKFWFLTKDRAFSLPSPFSNRGNYVI----SLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA 257 (641)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~ 257 (641)
..+.+.++.. .++.+. ... .+... ....+.+.|.+.+++.|++++.++.|+++..++ + .+.|++.
T Consensus 75 ~~d~~~~~~~-~Gv~~~--~~~-~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~-~-~~~v~~~----- 143 (400)
T TIGR00275 75 NKDLIDFFES-LGLELK--VEE-DGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD-N-GFGVETS----- 143 (400)
T ss_pred HHHHHHHHHH-cCCeeE--Eec-CCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC-C-eEEEEEC-----
Confidence 0000011100 000000 000 01111 246788899999999999999999999997655 3 3356653
Q ss_pred cCCCcccccccceEEEcCEEEEcCCCCC
Q 006539 258 KDGSKKENFQRGVELRGRITLLAEGCRG 285 (641)
Q Consensus 258 ~~g~~~~~~~~g~~i~a~~vV~A~G~~s 285 (641)
+.++.+|.||+|+|.++
T Consensus 144 -----------~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 144 -----------GGEYEADKVILATGGLS 160 (400)
T ss_pred -----------CcEEEcCEEEECCCCcc
Confidence 35789999999999876
No 192
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.89 E-value=1.3e-08 Score=111.81 Aligned_cols=148 Identities=21% Similarity=0.290 Sum_probs=85.7
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEEE
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (641)
||+||||||+|+.+|..|+++ |.+|+|+||.. +|++|.+-+|++.+.+.+.......... ....++..
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~------g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~-----~~~~g~~~ 70 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQL------GADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRR-----AAELGIRF 70 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhC------CCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHH-----HHhCCccc
Confidence 799999999999999999999 99999999875 7999999999999887543221111000 00000000
Q ss_pred e-ecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEE-cCCCcEEEEEeCccccccCCCccccc
Q 006539 189 L-TKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILY-DADNKVIGIGTNDMGIAKDGSKKENF 266 (641)
Q Consensus 189 ~-~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~-~~~g~v~~V~~~~~g~~~~g~~~~~~ 266 (641)
. .....++++........ -...+.+.+.+.+++.||+++.++.. .+.. .++..+ .|.+.+ |+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~gV~~~~g~~~-~~~~~~~~~~v-~V~~~~------g~----- 134 (466)
T PRK07845 71 IDDGEARVDLPAVNARVKA---LAAAQSADIRARLEREGVRVIAGRGR-LIDPGLGPHRV-KVTTAD------GG----- 134 (466)
T ss_pred ccCcccccCHHHHHHHHHH---HHHHHHHHHHHHHHHCCCEEEEEEEE-EeecccCCCEE-EEEeCC------Cc-----
Confidence 0 00000111100000000 01122334556677789999988643 2221 122333 455443 11
Q ss_pred ccceEEEcCEEEEcCCCCCc
Q 006539 267 QRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (641)
..++.+|.||+|+|+++.
T Consensus 135 --~~~~~~d~lViATGs~p~ 152 (466)
T PRK07845 135 --EETLDADVVLIATGASPR 152 (466)
T ss_pred --eEEEecCEEEEcCCCCCC
Confidence 037899999999999874
No 193
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.89 E-value=1.5e-08 Score=112.06 Aligned_cols=144 Identities=24% Similarity=0.294 Sum_probs=86.1
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEEE
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (641)
.|+|||||++||++|..|.+. |++|+++||.+.+||.........+. ..+.|.. +......+.+.+
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~------g~~~~~fE~~~~iGG~W~~~~~~~~g----~~~~y~s----l~~n~sk~~~~f 68 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEE------GLEVTCFEKSDDIGGLWRYTENPEDG----RSSVYDS----LHTNTSKEMMAF 68 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHT------T-EEEEEESSSSSSGGGCHSTTCCCS----EGGGSTT-----B-SS-GGGSCC
T ss_pred EEEEECccHHHHHHHHHHHHC------CCCCeEEecCCCCCccCeeCCcCCCC----ccccccc----eEEeeCchHhcC
Confidence 499999999999999999998 99999999999999854211000000 0000000 000111111111
Q ss_pred eecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCC--EEecCceEEEEEEcCCC---cEEEEEeCccccccCCCcc
Q 006539 189 LTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGV--EIYPGFAASEILYDADN---KVIGIGTNDMGIAKDGSKK 263 (641)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv--~i~~g~~v~~i~~~~~g---~v~~V~~~~~g~~~~g~~~ 263 (641)
. ++|.+. .... ..++.++.++|.+.|+..++ .|.++++|+++...++. ..+.|++.+ +|+
T Consensus 69 ----s--dfp~p~-~~p~-f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~-----~g~-- 133 (531)
T PF00743_consen 69 ----S--DFPFPE-DYPD-FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEN-----DGK-- 133 (531)
T ss_dssp ----T--TS-HCC-CCSS-SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETT-----TTE--
T ss_pred ----C--CcCCCC-CCCC-CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeec-----CCe--
Confidence 0 122111 1112 35789999999999999875 59999999999886542 235677654 222
Q ss_pred cccccceEEEcCEEEEcCCCCCc
Q 006539 264 ENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 264 ~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
..+-.+|.||+|+|.++.
T Consensus 134 -----~~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 134 -----EETEEFDAVVVATGHFSK 151 (531)
T ss_dssp -----EEEEEECEEEEEE-SSSC
T ss_pred -----EEEEEeCeEEEcCCCcCC
Confidence 134568999999999864
No 194
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.87 E-value=3.9e-08 Score=107.26 Aligned_cols=67 Identities=31% Similarity=0.244 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcC-CCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCchhH
Q 006539 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDA-DNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSE 289 (641)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~-~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~ 289 (641)
...+.+.|.+.+++.|++|+++++|++++.++ ++++++|...+ ++..+++|.||+|+|..+..+.
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~--------------~~~~i~ak~VIlAtGG~~~n~~ 187 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTV--------------GTHRITTQALVLAAGGLGANRD 187 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcC--------------CcEEEEcCEEEEcCCCcccCHH
Confidence 35688899999999999999999999998763 47777877543 1357899999999999987555
Q ss_pred HH
Q 006539 290 KL 291 (641)
Q Consensus 290 ~l 291 (641)
-+
T Consensus 188 ~~ 189 (432)
T TIGR02485 188 WL 189 (432)
T ss_pred HH
Confidence 33
No 195
>PRK07233 hypothetical protein; Provisional
Probab=98.87 E-value=1.4e-06 Score=95.14 Aligned_cols=38 Identities=39% Similarity=0.559 Sum_probs=35.9
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~ 152 (641)
+|+|||||++||+||+.|++. |++|+|+|+++.+||.+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~------G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR------GHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCcEEEEEeCCCCCCce
Confidence 599999999999999999999 99999999999998865
No 196
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.87 E-value=2e-07 Score=92.78 Aligned_cols=179 Identities=20% Similarity=0.253 Sum_probs=98.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCC--CCccccccccC-----hHHH------HHhhhhhhh
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV--GAHIISGNVFE-----PRAL------NELLPQWKQ 172 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~--g~~~~~g~~i~-----~~~l------~~l~~~~~~ 172 (641)
...||+|||||..|++.|++|+++. ...|++|+|+||.... ..+.+|.|.|- |..+ .+++..-++
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~--rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~e 162 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERA--RDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNARE 162 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHh--hcCCceEEEEeccCcccccceeeeecceeeecccchhhhhhhHHHHHHHHHHH
Confidence 4689999999999999999998863 2347999999998754 23334444332 1111 111111111
Q ss_pred c-----CCCeeeeccCccEEEeecCc---------cc------------------cCCCCC---------CCCCcEEeeH
Q 006539 173 E-----EAPIRVPVSSDKFWFLTKDR---------AF------------------SLPSPF---------SNRGNYVISL 211 (641)
Q Consensus 173 ~-----~~~~~~~~~~~~~~~~~~~~---------~~------------------~~~~~~---------~~~~~~~v~~ 211 (641)
. ..+....+...+.-.+.... .+ .+|..- .-.....++.
T Consensus 163 hl~~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPwlntegVaLa~lG~e~EGwfdp 242 (509)
T KOG2853|consen 163 HLGILDSEQVDLNFFPTGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPWLNTEGVALASLGVEKEGWFDP 242 (509)
T ss_pred hhccccCCCCCcccCCCceEEEcchhhHHHHHHhHHHHHhhcchhcccCHHHHhhhCCcccccceeeeecccccccccCH
Confidence 1 11112222222221111100 00 112110 0001123677
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCcc-------cc------ccCCCcccccccceEEEcCEEE
Q 006539 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDM-------GI------AKDGSKKENFQRGVELRGRITL 278 (641)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~-------g~------~~~g~~~~~~~~g~~i~a~~vV 278 (641)
..|...+.+.+..+|+.+..| .|+.++++.... +.+.++++ ++ -.|+. ...+++.++|
T Consensus 243 w~LLs~~rrk~~~lGv~f~~G-eV~~Fef~sqr~-v~~~tDd~t~~~~~~~i~~vvV~m~d~~-------~r~vk~al~V 313 (509)
T KOG2853|consen 243 WALLSGIRRKAITLGVQFVKG-EVVGFEFESQRA-VHAFTDDGTAKLRAQRISGVVVRMNDAL-------ARPVKFALCV 313 (509)
T ss_pred HHHHHHHHHHhhhhcceEecc-eEEEEEEecccc-eeeecccchhhhhhcccceeEEecCchh-------cCceeEEEEE
Confidence 889999999999999999877 588888763211 12222221 00 01122 2678999999
Q ss_pred EcCCCCCchhHHHHHHcCCC
Q 006539 279 LAEGCRGSLSEKLIKNFKLR 298 (641)
Q Consensus 279 ~A~G~~s~vr~~l~~~~~~~ 298 (641)
.|.|++| .|+++..++-
T Consensus 314 ~aAGa~s---~QvArlAgIG 330 (509)
T KOG2853|consen 314 NAAGAWS---GQVARLAGIG 330 (509)
T ss_pred eccCccH---HHHHHHhccC
Confidence 9999997 4777666665
No 197
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.84 E-value=7.7e-09 Score=101.86 Aligned_cols=163 Identities=26% Similarity=0.351 Sum_probs=97.3
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccc------cccccC----------hHH----------
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII------SGNVFE----------PRA---------- 162 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~------~g~~i~----------~~~---------- 162 (641)
.|||||+|.|||+|+..+-.. |-.|+++||...+|+... +|++-. |+.
T Consensus 11 pvvVIGgGLAGLsasn~iin~------gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~sak 84 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINK------GGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAK 84 (477)
T ss_pred cEEEECCchhhhhhHHHHHhc------CCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcc
Confidence 499999999999999999887 667999999999888652 222211 110
Q ss_pred ---HHHhhhhhhhcCCCeeeeccCccEEEeecCcccc-----------CCCCCCCCCcEEeeHHHHHHHHHHHHH----H
Q 006539 163 ---LNELLPQWKQEEAPIRVPVSSDKFWFLTKDRAFS-----------LPSPFSNRGNYVISLSQLVRWLGGKAE----E 224 (641)
Q Consensus 163 ---l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~v~~~~l~~~L~~~a~----~ 224 (641)
..+|+..+.. -....+.|+.....++ .|..-+.. .-.-..-.+...|..+++ +
T Consensus 85 sk~~~eLm~~La~--------~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s-~plppgfei~~~L~~~l~k~as~ 155 (477)
T KOG2404|consen 85 SKGVPELMEKLAA--------NSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSS-GPLPPGFEIVKALSTRLKKKASE 155 (477)
T ss_pred cCCcHHHHHHHHh--------cCHHHHHHHhhhcccchHHHHHhcCCCCCcccccC-CCCCCchHHHHHHHHHHHHhhhc
Confidence 0111111110 0111122222211111 11110000 000112244444544443 3
Q ss_pred c--CCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCC
Q 006539 225 L--GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (641)
Q Consensus 225 ~--Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~ 298 (641)
. -++|..+++|++|..+ +|.|.+|..-| ..|+. ..+.++.||+|+|.++.--+.|++.|+.+
T Consensus 156 ~pe~~ki~~nskvv~il~n-~gkVsgVeymd----~sgek-------~~~~~~~VVlatGGf~ysd~~lLKey~pe 219 (477)
T KOG2404|consen 156 NPELVKILLNSKVVDILRN-NGKVSGVEYMD----ASGEK-------SKIIGDAVVLATGGFGYSDKELLKEYGPE 219 (477)
T ss_pred ChHHHhhhhcceeeeeecC-CCeEEEEEEEc----CCCCc-------cceecCceEEecCCcCcChHHHHHHhChh
Confidence 2 2889999999999855 48899999876 55653 56789999999999997668888777644
No 198
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.83 E-value=4.4e-08 Score=108.77 Aligned_cols=63 Identities=25% Similarity=0.335 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 211 LSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 211 ~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
...+.+.|.+.+++. ||+++.++.++++..++ +++++|.+.+. +. ...+.||.||+|+|..+.
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~-g~v~Gv~~~~~-----~~-------~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDD-GAVAGVLAATA-----GG-------PVVLPARAVVLATGGIGG 198 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecC-CEEEEEEEEeC-----Ce-------EEEEECCEEEEcCCCCcC
Confidence 356888888888775 89999999999987664 77888876531 11 136899999999999875
No 199
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.81 E-value=4.3e-08 Score=115.85 Aligned_cols=166 Identities=16% Similarity=0.242 Sum_probs=87.5
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccc--cccC------hHHHHHhhhhhhhcCC
Q 006539 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISG--NVFE------PRALNELLPQWKQEEA 175 (641)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g--~~i~------~~~l~~l~~~~~~~~~ 175 (641)
+.+++||||||||.|||+||+.+++. |++|+|+||.....+....+ +.+. ....+..+.+......
T Consensus 10 ~~~~~DVlVVG~G~AGl~AAl~Aa~~------G~~V~lleK~~~~~sg~~~~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~ 83 (897)
T PRK13800 10 LRLDCDVLVIGGGTAGTMAALTAAEH------GANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDYVAEITRAND 83 (897)
T ss_pred ceeecCEEEECcCHHHHHHHHHHHHC------CCeEEEEecccccCCCcccCCchhhhcccCCCccCHHHHHHHHHhhcC
Confidence 44679999999999999999999998 99999999987421111111 1111 0111111111100000
Q ss_pred Ce------e----------eeccCccEEEee-cCccccCCCCCCCCCcEE---eeHHHHHHHHHHHHHH----cCCEEec
Q 006539 176 PI------R----------VPVSSDKFWFLT-KDRAFSLPSPFSNRGNYV---ISLSQLVRWLGGKAEE----LGVEIYP 231 (641)
Q Consensus 176 ~~------~----------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---v~~~~l~~~L~~~a~~----~Gv~i~~ 231 (641)
.. . ......++.|.. ....+.... ....+.+. -....+...|.+.+.+ .+|++..
T Consensus 84 gl~d~~~v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~-~~~~~~~~~~~~tG~~i~~~L~~~l~~~~~~~~i~~~~ 162 (897)
T PRK13800 84 GIVNQRTVYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRR-VHRSGSYVLPMPEGKDVKKALYRVLRQRSMRERIRIEN 162 (897)
T ss_pred CCCCHHHHHHHHHhHHHHHHHHHHcCCceeeCCCCCEeeee-eccCCCccccCCCchhHHHHHHHHHHHhhhcCCcEEEe
Confidence 00 0 000011111111 000000000 00000111 0233455555555544 3688988
Q ss_pred CceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCch
Q 006539 232 GFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 232 g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~v 287 (641)
++.+.++..++ |++.||..-+. ++|+. ..+.||.||+|||..+.+
T Consensus 163 ~~~~~~Li~~~-g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~g~~ 207 (897)
T PRK13800 163 RLMPVRVLTEG-GRAVGAAALNT---RTGEF-------VTVGAKAVILATGPCGRL 207 (897)
T ss_pred ceeeEEEEeeC-CEEEEEEEEec---CCCcE-------EEEECCEEEECCCccccC
Confidence 88888887654 78888876431 23332 578999999999998864
No 200
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=98.80 E-value=2.8e-09 Score=96.93 Aligned_cols=54 Identities=20% Similarity=0.459 Sum_probs=46.7
Q ss_pred CCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEEC
Q 006539 567 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 629 (641)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~ 629 (641)
+-.|-.|+ +.||..+||+++|..+++ .+++|+|.|++||.|..+||+++|+.+.
T Consensus 50 pv~C~qCe----daPC~~vCP~~AI~~~~~-----~v~V~~ekCiGC~~C~~aCPfGai~~~~ 103 (165)
T COG1142 50 PVVCHHCE----DAPCAEVCPVGAITRDDG-----AVQVDEEKCIGCKLCVVACPFGAITMVS 103 (165)
T ss_pred CCcCCCCC----CcchhhhCchhheeecCC-----ceEEchhhccCcchhhhcCCcceEEEEe
Confidence 34566666 899999999999998643 7999999999999999999999998654
No 201
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.78 E-value=1.2e-07 Score=103.55 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEc-CC--CcEEEEEeCccccccCCCcccccccc-eEEEcCEEEEcCCCCCc
Q 006539 212 SQLVRWLGGKAEELGVEIYPGFAASEILYD-AD--NKVIGIGTNDMGIAKDGSKKENFQRG-VELRGRITLLAEGCRGS 286 (641)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~-~~--g~v~~V~~~~~g~~~~g~~~~~~~~g-~~i~a~~vV~A~G~~s~ 286 (641)
..+..-|.+.+++.||+++++++|+++..+ ++ ++|++|.+.. +|+. .. .....|+||+|+|+...
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~-----~~~~-----~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTR-----NGKE-----ETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEe-----CCce-----eEEEecCCCEEEEeCCcCcc
Confidence 566777888999999999999999999986 32 5688888753 1211 01 23468999999998643
No 202
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=98.78 E-value=3.2e-09 Score=80.34 Aligned_cols=55 Identities=20% Similarity=0.370 Sum_probs=35.3
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCC-CCeeE
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPK-QNIKW 627 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~-~~i~w 627 (641)
|.+.|+.|. .|..+||.++++..+.+++. ++.++++.|++||.|..+||+ +||+.
T Consensus 4 d~~~Ci~Cg------~C~~~Cp~~~~~~i~~~~~~-~~~v~~~~C~GCg~C~~~CPv~~AI~m 59 (59)
T PF14697_consen 4 DEDKCIGCG------KCVRACPDGAIDAIEVDEGK-KVPVNPDKCIGCGLCVKVCPVKDAITM 59 (59)
T ss_dssp -TTT----S------CCCHHCCCCS-S-ECCTTTT-SSECE-TT--S-SCCCCCSSSTTSEEE
T ss_pred CcccccChh------hHHhHcCccceeeEEecCCe-eEEeccccCcCcCcccccCCCccCCCC
Confidence 789999997 79999998777665433332 567889999999999999997 99974
No 203
>PRK10262 thioredoxin reductase; Provisional
Probab=98.77 E-value=8.2e-08 Score=100.46 Aligned_cols=114 Identities=17% Similarity=0.247 Sum_probs=75.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCcc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (641)
..+||+|||||||||+||+.|+++ |++|+++|+. ..|+.+.....
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~------g~~~~~ie~~-~~gg~~~~~~~---------------------------- 49 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARA------NLQPVLITGM-EKGGQLTTTTE---------------------------- 49 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHC------CCCeEEEEee-cCCCceecCce----------------------------
Confidence 468999999999999999999999 9999999965 45543210000
Q ss_pred EEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccc
Q 006539 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (641)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~ 265 (641)
+ .++|.. ...+....+.+.+.+.+...++++..+ .|+++...+ +. +.+...+
T Consensus 50 ~--------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~-~~-~~v~~~~------------ 101 (321)
T PRK10262 50 V--------ENWPGD-----PNDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQN-RP-FRLTGDS------------ 101 (321)
T ss_pred E--------CCCCCC-----CCCCCHHHHHHHHHHHHHHCCCEEEee-EEEEEEecC-Ce-EEEEecC------------
Confidence 0 001100 001234566777888888888888776 466776554 32 2344322
Q ss_pred cccceEEEcCEEEEcCCCCCc
Q 006539 266 FQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 266 ~~~g~~i~a~~vV~A~G~~s~ 286 (641)
..+.+|.||+|+|.++.
T Consensus 102 ----~~~~~d~vilAtG~~~~ 118 (321)
T PRK10262 102 ----GEYTCDALIIATGASAR 118 (321)
T ss_pred ----CEEEECEEEECCCCCCC
Confidence 36899999999999864
No 204
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.77 E-value=2.8e-07 Score=89.86 Aligned_cols=166 Identities=17% Similarity=0.240 Sum_probs=90.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc-ccccccC----h---HHHH----HhhhhhhhcC
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE----P---RALN----ELLPQWKQEE 174 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~-~~g~~i~----~---~~l~----~l~~~~~~~~ 174 (641)
...|+|||||+.|.++|+.|++...-....+.|+|+|+....|+.. ..+|.+. + ..|. .|...+.+.-
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsdey 89 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDEY 89 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHhh
Confidence 3579999999999999999999811111127899999987665532 2222221 1 1111 1111111110
Q ss_pred CCeeeeccCccE--EEeecC----c------cccC---------CCCCCCCCcEEeeHHHHHHHHHHHHHHcC-CEEecC
Q 006539 175 APIRVPVSSDKF--WFLTKD----R------AFSL---------PSPFSNRGNYVISLSQLVRWLGGKAEELG-VEIYPG 232 (641)
Q Consensus 175 ~~~~~~~~~~~~--~~~~~~----~------~~~~---------~~~~~~~~~~~v~~~~l~~~L~~~a~~~G-v~i~~g 232 (641)
.... ......+ |+...+ . ++++ ..........+++...|++.+++.+++.| |++++|
T Consensus 90 dGvn-nwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~G 168 (380)
T KOG2852|consen 90 DGVN-NWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFG 168 (380)
T ss_pred cCcc-cccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEEe
Confidence 0000 0000000 111100 0 0111 00011112456899999999999999876 999999
Q ss_pred ceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 233 FAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 233 ~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
. |.++. ++.+++..|-..+ ..+ .......+.+|+|.|.|+.
T Consensus 169 k-v~ev~-dEk~r~n~v~~ae----~~~-------ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 169 K-VKEVS-DEKHRINSVPKAE----AED-------TIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred e-eEEee-cccccccccchhh----hcC-------ceEEeeeeEEEEecCCCch
Confidence 6 77776 3346665554332 111 1466778899999999974
No 205
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.77 E-value=1.6e-08 Score=98.04 Aligned_cols=117 Identities=29% Similarity=0.403 Sum_probs=73.0
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEEE
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (641)
||||||||+||+++|..|++. +++|+|+|+.+.... ...++....+.+..+....
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~------~~~v~ii~~~~~~~~---~~~~~~~~~~~~~~~~~~~---------------- 55 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP------GAKVLIIEKSPGTPY---NSGCIPSPLLVEIAPHRHE---------------- 55 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------TSEEEEESSSSHHHH---HHSHHHHHHHHHHHHHHHH----------------
T ss_pred CEEEEecHHHHHHHHHHHhcC------CCeEEEEeccccccc---ccccccccccccccccccc----------------
Confidence 799999999999999999988 999999988763221 2222222222111110000
Q ss_pred eecCccccCCCCCCCCCcEEeeHHHHHH--HHHHHHHHcCCEEecCceEEEEEEcCCCcE----EEEEeCccccccCCCc
Q 006539 189 LTKDRAFSLPSPFSNRGNYVISLSQLVR--WLGGKAEELGVEIYPGFAASEILYDADNKV----IGIGTNDMGIAKDGSK 262 (641)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~--~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v----~~V~~~~~g~~~~g~~ 262 (641)
... .+ .+.+++...+++++.+..+.++.... +.+ ..+.... .
T Consensus 56 ----------------------~~~-~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~-~~~~~~~~~~~~~~-----~--- 103 (201)
T PF07992_consen 56 ----------------------FLP-ARLFKLVDQLKNRGVEIRLNAKVVSIDPES-KRVVCPAVTIQVVE-----T--- 103 (201)
T ss_dssp ----------------------HHH-HHHGHHHHHHHHHTHEEEHHHTEEEEEEST-TEEEETCEEEEEEE-----T---
T ss_pred ----------------------ccc-ccccccccccccceEEEeeccccccccccc-cccccCcccceeec-----c---
Confidence 000 01 34555667889998889999997766 321 1121100 0
Q ss_pred ccccccceEEEcCEEEEcCCCCCc
Q 006539 263 KENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 263 ~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
..+.++.+|+||+|+|..+.
T Consensus 104 ----~~~~~~~~d~lviAtG~~~~ 123 (201)
T PF07992_consen 104 ----GDGREIKYDYLVIATGSRPR 123 (201)
T ss_dssp ----TTEEEEEEEEEEEESTEEEE
T ss_pred ----CCceEecCCeeeecCccccc
Confidence 12588999999999996653
No 206
>PLN02612 phytoene desaturase
Probab=98.77 E-value=4.9e-07 Score=101.59 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCC
Q 006539 213 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 283 (641)
Q Consensus 213 ~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~ 283 (641)
.+.+.|.+.+++.|++|+++++|++|..++++.+++|.+.+ |++++||.||.|+..
T Consensus 309 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~---------------G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 309 RLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTN---------------GSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECC---------------CcEEECCEEEECCCH
Confidence 45677777777789999999999999987777777788765 678999999999864
No 207
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.76 E-value=1.4e-07 Score=104.61 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCchhH
Q 006539 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSE 289 (641)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~ 289 (641)
...+.+.|.+.+++.|++|+.+++|++|..++ +++.+|++.+ |.++.||.||.|.|.+..+.+
T Consensus 228 ~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~---------------g~~~~ad~vV~a~~~~~~~~~ 290 (493)
T TIGR02730 228 VGQIAESLVKGLEKHGGQIRYRARVTKIILEN-GKAVGVKLAD---------------GEKIYAKRIVSNATRWDTFGK 290 (493)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCeeeEEEecC-CcEEEEEeCC---------------CCEEEcCEEEECCChHHHHHH
Confidence 36788889999999999999999999998776 6777898876 678999999999998866544
No 208
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.74 E-value=2.9e-07 Score=96.59 Aligned_cols=79 Identities=19% Similarity=0.295 Sum_probs=62.3
Q ss_pred EEeeHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCC
Q 006539 207 YVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (641)
Q Consensus 207 ~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s 285 (641)
.-|+-+.|.+.|.+.+.+. |+++++++.|++|...+||.. .|.+.+ ..+|+ ..+++|++|++..|+++
T Consensus 176 TDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W-~v~~~~---~~~~~-------~~~v~a~FVfvGAGG~a 244 (488)
T PF06039_consen 176 TDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRW-EVKVKD---LKTGE-------KREVRAKFVFVGAGGGA 244 (488)
T ss_pred ccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCE-EEEEEe---cCCCC-------eEEEECCEEEECCchHh
Confidence 3477899999999999887 899999999999999988743 566544 12333 37899999999999997
Q ss_pred chhHHHHHHcCCCc
Q 006539 286 SLSEKLIKNFKLRE 299 (641)
Q Consensus 286 ~vr~~l~~~~~~~~ 299 (641)
. .|+++.|+++
T Consensus 245 L---~LLqksgi~e 255 (488)
T PF06039_consen 245 L---PLLQKSGIPE 255 (488)
T ss_pred H---HHHHHcCChh
Confidence 5 6677778763
No 209
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.73 E-value=7.2e-08 Score=106.83 Aligned_cols=166 Identities=21% Similarity=0.302 Sum_probs=94.1
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccc-cccC-----hH-----HHHHhhh-hhhh
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISG-NVFE-----PR-----ALNELLP-QWKQ 172 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g-~~i~-----~~-----~l~~l~~-~~~~ 172 (641)
..++||||||||.|||.||+.++.. |++|+|+||....++++..+ +.+. .. ..+..+. .+..
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~------g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg 77 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEA------GLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKG 77 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhc------CCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhc
Confidence 3579999999999999999999999 99999999998877665321 1111 00 0111100 0000
Q ss_pred cCCC-----ee----------eeccCccEEEee-cCcccc---CCCCCCCCCcEEe--eHHHHHHHHHHHHHH-cCCEEe
Q 006539 173 EEAP-----IR----------VPVSSDKFWFLT-KDRAFS---LPSPFSNRGNYVI--SLSQLVRWLGGKAEE-LGVEIY 230 (641)
Q Consensus 173 ~~~~-----~~----------~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~v--~~~~l~~~L~~~a~~-~Gv~i~ 230 (641)
.... +. ........-|.. ....+. +......+..|.- ....+...|.+++.+ .+++++
T Consensus 78 ~d~l~dqd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~ 157 (562)
T COG1053 78 GDGLGDQDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIF 157 (562)
T ss_pred cCCcCCHHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhh
Confidence 0000 00 000000000000 000000 0000000111211 235677888888888 567899
Q ss_pred cCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 231 PGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 231 ~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
.+..+.++..++++.+.+|..-+. .+|+. ..+++|.||+|||..+.
T Consensus 158 ~~~~~~~l~~~~~~~v~Gvv~~~~---~~g~~-------~~~~akavilaTGG~g~ 203 (562)
T COG1053 158 DEYFVLDLLVDDGGGVAGVVARDL---RTGEL-------YVFRAKAVILATGGAGR 203 (562)
T ss_pred hhhhhhhheecCCCcEEEEEEEEe---cCCcE-------EEEecCcEEEccCCceE
Confidence 999999998887665667765541 23432 67889999999999883
No 210
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.72 E-value=2.8e-08 Score=92.27 Aligned_cols=155 Identities=22% Similarity=0.350 Sum_probs=93.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChH-HHHHhhhhhhhcCCCeeeeccCcc
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPR-ALNELLPQWKQEEAPIRVPVSSDK 185 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~-~l~~l~~~~~~~~~~~~~~~~~~~ 185 (641)
+.||||||+|.+||++|+..++. +|.++|+|||..-.+|+...-||.+-+. .+..-...+..
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~----rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLFL~------------- 138 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKN----RPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLFLQ------------- 138 (328)
T ss_pred ccceEEECCCccccceeeeeecc----CCCceEEEEEeeecCCCcccccchhhhhhhhcChHHHHHH-------------
Confidence 57999999999999999999876 6899999999998887654334432221 11000000000
Q ss_pred EEEeecCccccCCCCCCCCCcEEe--eHHHHHHHHHHH-HHHcCCEEecCceEEEEEEcC--CC--cEEEEEeCcccccc
Q 006539 186 FWFLTKDRAFSLPSPFSNRGNYVI--SLSQLVRWLGGK-AEELGVEIYPGFAASEILYDA--DN--KVIGIGTNDMGIAK 258 (641)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v--~~~~l~~~L~~~-a~~~Gv~i~~g~~v~~i~~~~--~g--~v~~V~~~~~g~~~ 258 (641)
.+..+....+.|++ +...|......+ +...+|+++..+.|+++...+ +| +|.||.++-.-+..
T Consensus 139 ----------EigvpYedegdYVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNWtLV~q 208 (328)
T KOG2960|consen 139 ----------EIGVPYEDEGDYVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNWTLVTQ 208 (328)
T ss_pred ----------HhCCCcccCCCEEEEeeHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEeeeEEeee
Confidence 01112233445554 334444444443 344579999999998887543 23 46677665433333
Q ss_pred CCCcccccccceEEEcCEEEEcCCCCCchhH
Q 006539 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSE 289 (641)
Q Consensus 259 ~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~ 289 (641)
....+....+ ..+++.+||-++|..+....
T Consensus 209 nHgtQsCMDP-Nviea~~vvS~tGHDGPFGA 238 (328)
T KOG2960|consen 209 NHGTQSCMDP-NVIEAAVVVSTTGHDGPFGA 238 (328)
T ss_pred ccCccccCCC-CeeeEEEEEEccCCCCCchh
Confidence 2222233333 57899999999997765433
No 211
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.70 E-value=5.7e-06 Score=90.95 Aligned_cols=63 Identities=17% Similarity=0.133 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCC
Q 006539 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (641)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~ 284 (641)
..+.+.|.+.+++.|++|..++.|++|..++++++++|++.+. +|+. ..++.+|.||.|...+
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~----~~~~------~~~~~a~~VI~a~p~~ 275 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADG----EGQR------RFEVTADAYVSAMPVD 275 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecC----CCCc------eeEEECCEEEEcCCHH
Confidence 3566777777778899999999999998776677778887541 0100 0178999999999764
No 212
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.70 E-value=1.5e-07 Score=103.75 Aligned_cols=57 Identities=30% Similarity=0.381 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCC
Q 006539 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 283 (641)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~ 283 (641)
-..+.+.|.+.+++.|++|+++++|++|..++ |+.++|++.+ |..+++|.||.+...
T Consensus 223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~-g~g~~~~~~~---------------g~~~~ad~vv~~~~~ 279 (487)
T COG1233 223 MGALVDALAELAREHGGEIRTGAEVSQILVEG-GKGVGVRTSD---------------GENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCceEEEEEeC-CcceEEeccc---------------cceeccceeEecCch
Confidence 47888999999999999999999999999887 5555666655 457889999888776
No 213
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.70 E-value=3.4e-08 Score=116.10 Aligned_cols=98 Identities=23% Similarity=0.307 Sum_probs=71.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccE
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (641)
..+|+|||||||||+||+.|++. |++|+|+|+...+||....|
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~------G~~VtVfE~~~~~GG~l~yG------------------------------- 348 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVE------GFPVTVFEAFHDLGGVLRYG------------------------------- 348 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC------CCeEEEEeeCCCCCceEEcc-------------------------------
Confidence 57899999999999999999999 99999999998887732211
Q ss_pred EEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccccc
Q 006539 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (641)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~ 266 (641)
+| .|... ..+.+...+.+++.||+++.|+.+ |+ .|++.+
T Consensus 349 ----------IP-------~~rlp-~~vi~~~i~~l~~~Gv~f~~n~~v--------G~--dit~~~------------- 387 (944)
T PRK12779 349 ----------IP-------EFRLP-NQLIDDVVEKIKLLGGRFVKNFVV--------GK--TATLED------------- 387 (944)
T ss_pred ----------CC-------CCcCh-HHHHHHHHHHHHhhcCeEEEeEEe--------cc--EEeHHH-------------
Confidence 11 11112 244555567778899999998765 32 244433
Q ss_pred ccceEEEcCEEEEcCCCC
Q 006539 267 QRGVELRGRITLLAEGCR 284 (641)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~ 284 (641)
.....+|.||+|+|++
T Consensus 388 --l~~~~yDAV~LAtGA~ 403 (944)
T PRK12779 388 --LKAAGFWKIFVGTGAG 403 (944)
T ss_pred --hccccCCEEEEeCCCC
Confidence 2345699999999996
No 214
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.69 E-value=2.2e-07 Score=75.73 Aligned_cols=78 Identities=26% Similarity=0.342 Sum_probs=65.2
Q ss_pred EEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEEEe
Q 006539 110 VVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWFL 189 (641)
Q Consensus 110 VvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 189 (641)
|+|||||+.|+.+|..|++. |.+|+|+++++.+... +
T Consensus 2 vvViGgG~ig~E~A~~l~~~------g~~vtli~~~~~~~~~------------------~------------------- 38 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAEL------GKEVTLIERSDRLLPG------------------F------------------- 38 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHT------TSEEEEEESSSSSSTT------------------S-------------------
T ss_pred EEEECcCHHHHHHHHHHHHh------CcEEEEEeccchhhhh------------------c-------------------
Confidence 89999999999999999999 9999999999865410 0
Q ss_pred ecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCc
Q 006539 190 TKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTND 253 (641)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~ 253 (641)
...+.+.+.+.+++.||++++++.++++..++++ +. |++.|
T Consensus 39 ---------------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~~~ 79 (80)
T PF00070_consen 39 ---------------------DPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTLED 79 (80)
T ss_dssp ---------------------SHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEEET
T ss_pred ---------------------CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEEec
Confidence 1255666777888899999999999999999877 65 88765
No 215
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.69 E-value=8.4e-06 Score=89.86 Aligned_cols=42 Identities=36% Similarity=0.488 Sum_probs=37.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCC--CCcEEEEcCCCCCCCccc
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNV--DLSVCVVEKGAEVGAHII 153 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~--G~~V~viEk~~~~g~~~~ 153 (641)
.||+|||||++||++|+.|++. .+ |++|+|+|+++.+||.+.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~----~~~~g~~v~vlE~~~r~GG~~~ 46 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKE----IPELPVELTLVEASDRVGGKIQ 46 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhc----CCCCCCcEEEEEcCCcCcceEE
Confidence 5899999999999999999986 23 799999999999988753
No 216
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=98.68 E-value=7.6e-09 Score=95.58 Aligned_cols=56 Identities=20% Similarity=0.306 Sum_probs=46.2
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCC---Cc---eeEEEecCCCccCCCccccCCCCCeeE
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEK---NQ---LKLQINAQNCLHCKACDIKDPKQNIKW 627 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~---~~---~~~~~~~~~C~~C~~C~~~cp~~~i~w 627 (641)
+.+.|+.|. .|..+||+++++++..+. |. +...||+..||.||-|..+||++||.-
T Consensus 53 ~~~~CIgC~------lCa~iCP~~aI~m~~~~~~~~g~~~~~~~~In~grCIfCg~C~e~CPt~Al~~ 114 (172)
T COG1143 53 DRDKCIGCG------LCANICPANAITMETAERKVDGRKKPKRPDINLGRCIFCGLCVEVCPTGALVL 114 (172)
T ss_pred cccCCcchh------HHHhhCCcCceEEEEcccCCCCccccccceeccccccccCchhhhCchhhhcC
Confidence 445699997 799999999999875421 22 358999999999999999999999963
No 217
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.68 E-value=1.3e-07 Score=91.53 Aligned_cols=142 Identities=26% Similarity=0.381 Sum_probs=84.1
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc----ccccccC-------h--HHHHHhhhhhhhcCC
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI----ISGNVFE-------P--RALNELLPQWKQEEA 175 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~----~~g~~i~-------~--~~l~~l~~~~~~~~~ 175 (641)
+|+|||+|++||++|+.|+.. |++|+|+||+.-+||.. +.++.++ + ..+.+....|.+.+.
T Consensus 3 siaIVGaGiAGl~aA~~L~~a------G~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~gl 76 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA------GREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGL 76 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc------CcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCc
Confidence 699999999999999999999 99999999998877753 2233332 2 223344555554321
Q ss_pred CeeeeccCccEEEeecCccccCCCCCCCCCcEE--eeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCc
Q 006539 176 PIRVPVSSDKFWFLTKDRAFSLPSPFSNRGNYV--ISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTND 253 (641)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~ 253 (641)
. .+....++-+..... -+..... .|+ -.-..|.+.|. ...+|+++++|+++...++ .+.+.+.+
T Consensus 77 V---~~W~~~~~~~~~~~~--~~~~d~~--pyvg~pgmsalak~LA-----tdL~V~~~~rVt~v~~~~~--~W~l~~~~ 142 (331)
T COG3380 77 V---DVWTPAVWTFTGDGS--PPRGDED--PYVGEPGMSALAKFLA-----TDLTVVLETRVTEVARTDN--DWTLHTDD 142 (331)
T ss_pred e---eeccccccccccCCC--CCCCCCC--ccccCcchHHHHHHHh-----ccchhhhhhhhhhheecCC--eeEEEecC
Confidence 1 112222222221110 0100110 132 22345555443 3467899999999988753 45688765
Q ss_pred cccccCCCcccccccceEEEcCEEEEcCCCC
Q 006539 254 MGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (641)
Q Consensus 254 ~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~ 284 (641)
| +....+|.||+|-=..
T Consensus 143 ------g--------~~~~~~d~vvla~PAP 159 (331)
T COG3380 143 ------G--------TRHTQFDDVVLAIPAP 159 (331)
T ss_pred ------C--------CcccccceEEEecCCC
Confidence 1 2456789998886543
No 218
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=98.68 E-value=4.8e-09 Score=87.94 Aligned_cols=59 Identities=20% Similarity=0.396 Sum_probs=43.9
Q ss_pred CCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEECCCC
Q 006539 567 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPEG 632 (641)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~p~g 632 (641)
+..|..|. +.+|+.+||+++|...++ +| .+.||.+.|++||.|..+||+++|.|..-.|
T Consensus 6 ~~~C~hC~----~ppC~~~CP~~Ai~~~~~-~G--~V~id~~~CigC~~C~~aCP~~ai~~~~~~~ 64 (98)
T PF13247_consen 6 PVQCRHCE----DPPCVEACPTGAIYKDPE-DG--IVVIDEDKCIGCGYCVEACPYGAIRFDPDTG 64 (98)
T ss_dssp EEC---BS----S-HHHHHCTTTSEEEETT-TS---EEE-TTTCCTHHHHHHH-TTS-EEEETTTT
T ss_pred CCcCcCcC----CCchhhhCCccceEEEcC-CC--eEEechhhccCchhhhhhhccCcceeecccc
Confidence 45677777 899999999999998652 33 6899999999999999999999999987654
No 219
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=98.65 E-value=1.2e-08 Score=81.25 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=45.9
Q ss_pred cCCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEEC
Q 006539 565 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 629 (641)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~ 629 (641)
.|.+.|..|. .|..+||.+++...++ +. ...|||+.|.+||.|+.+||++||+...
T Consensus 32 ~d~~kCi~C~------~C~~yCPe~~i~~~~~--~~-~~~idYdyCKGCGICa~vCP~kaI~Mv~ 87 (91)
T COG1144 32 VDEDKCINCK------LCWLYCPEPAILEEEG--GY-KVRIDYDYCKGCGICANVCPVKAIEMVR 87 (91)
T ss_pred EcccccccCc------eeEEECCchheeeccC--Cc-cceeEcccccCceechhhCChhheEeEe
Confidence 4678999986 7999999999887654 21 1129999999999999999999998765
No 220
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.63 E-value=6e-06 Score=91.05 Aligned_cols=45 Identities=38% Similarity=0.629 Sum_probs=36.1
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccc
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~ 153 (641)
+|+|||||++||+||+.|++.....+.|.+|+|+|+++.+||.+.
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~ 47 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH 47 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence 599999999999999999985100012489999999999998763
No 221
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.63 E-value=1.9e-08 Score=105.37 Aligned_cols=154 Identities=29% Similarity=0.420 Sum_probs=80.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc---ccccccChHHHHHhhhhhhhcCCCeeeeccC
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI---ISGNVFEPRALNELLPQWKQEEAPIRVPVSS 183 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~---~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~ 183 (641)
.||+|+||.||++|++|+.|.... +++++++||.+....|. +.|..+....|+.|. . ...+...
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~-----~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlv----t----~~~P~s~ 68 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG-----DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLV----T----LRDPTSP 68 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH--------EEEEES-SS--TTGGG--SS-B-SS-TTSSSS----T----TT-TTST
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC-----CCCEEEEecCCCCCcCCccCCCCCccccccccccC----c----CcCCCCc
Confidence 489999999999999999999981 59999999998765542 122222211111100 0 0000000
Q ss_pred ccE-EEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCC--cEEEEEeCccccccCC
Q 006539 184 DKF-WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADN--KVIGIGTNDMGIAKDG 260 (641)
Q Consensus 184 ~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g--~v~~V~~~~~g~~~~g 260 (641)
..+ .++.....+ ..+-+.+.+...|.++.++|.-.+++.+-.+.++.+|++|...+++ ....|.+.+ .+|
T Consensus 69 ~sflnYL~~~~rl---~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~----~~g 141 (341)
T PF13434_consen 69 FSFLNYLHEHGRL---YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD----SDG 141 (341)
T ss_dssp TSHHHHHHHTT-H---HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE----TTS
T ss_pred ccHHHHHHHcCCh---hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee----cCC
Confidence 000 011111000 0000111334678999999988888887668999999999987644 345677743 223
Q ss_pred CcccccccceEEEcCEEEEcCCCCCch
Q 006539 261 SKKENFQRGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 261 ~~~~~~~~g~~i~a~~vV~A~G~~s~v 287 (641)
. +.++.|+.||+|+|..+.+
T Consensus 142 ~-------~~~~~ar~vVla~G~~P~i 161 (341)
T PF13434_consen 142 D-------GETYRARNVVLATGGQPRI 161 (341)
T ss_dssp --------EEEEEESEEEE----EE--
T ss_pred C-------eeEEEeCeEEECcCCCCCC
Confidence 2 4799999999999955443
No 222
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=3.4e-08 Score=104.52 Aligned_cols=144 Identities=17% Similarity=0.291 Sum_probs=84.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCC-CCCccc--cccccChH----HHHHhhhhhhhcCCCeee
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE-VGAHII--SGNVFEPR----ALNELLPQWKQEEAPIRV 179 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~-~g~~~~--~g~~i~~~----~l~~l~~~~~~~~~~~~~ 179 (641)
.|||||||||-||+.||++.+|. |.+++++--... +|.... +-|.+... .++.|-..+..
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARm------G~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~------- 70 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARM------GAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGK------- 70 (621)
T ss_pred CCceEEECCCccchHHHHhhhcc------CCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHH-------
Confidence 59999999999999999999999 999999876543 222111 11111111 11111111111
Q ss_pred eccCc--cEEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHH-cCCEEecCceEEEEEEcCCCcEEEEEeCcccc
Q 006539 180 PVSSD--KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (641)
Q Consensus 180 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~ 256 (641)
..+.. .+..+....+-.+-. ..-.+++....+++.+.++. .+++++.+. |+++..+++.+|++|.+.+
T Consensus 71 ~~D~~~IQ~r~LN~sKGPAVra-----~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~-v~dli~e~~~~v~GV~t~~--- 141 (621)
T COG0445 71 AADKAGIQFRMLNSSKGPAVRA-----PRAQADKWLYRRAMKNELENQPNLHLLQGE-VEDLIVEEGQRVVGVVTAD--- 141 (621)
T ss_pred hhhhcCCchhhccCCCcchhcc-----hhhhhhHHHHHHHHHHHHhcCCCceehHhh-hHHHhhcCCCeEEEEEeCC---
Confidence 11111 112222111110000 01124455555556555555 368888765 7888776644688999988
Q ss_pred ccCCCcccccccceEEEcCEEEEcCCCC
Q 006539 257 AKDGSKKENFQRGVELRGRITLLAEGCR 284 (641)
Q Consensus 257 ~~~g~~~~~~~~g~~i~a~~vV~A~G~~ 284 (641)
|..+.|+.||+++|..
T Consensus 142 ------------G~~~~a~aVVlTTGTF 157 (621)
T COG0445 142 ------------GPEFHAKAVVLTTGTF 157 (621)
T ss_pred ------------CCeeecCEEEEeeccc
Confidence 8899999999999975
No 223
>PLN02576 protoporphyrinogen oxidase
Probab=98.61 E-value=3e-05 Score=86.28 Aligned_cols=42 Identities=40% Similarity=0.548 Sum_probs=37.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccc
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~ 153 (641)
++||+|||||++||++|+.|++. .|++|+|+|++..+||.+.
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~-----~g~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASK-----HGVNVLVTEARDRVGGNIT 53 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHh-----cCCCEEEEecCCCCCCcee
Confidence 57899999999999999999986 1699999999999998653
No 224
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=9.1e-08 Score=89.74 Aligned_cols=117 Identities=24% Similarity=0.329 Sum_probs=80.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccE
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (641)
.-.|+|||+|||+.+||+.+++. .++.+|+|-.- .++ +..||.+....-.+.+|.
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaara------elkPllfEG~~-~~~-i~pGGQLtTTT~veNfPG----------------- 62 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARA------ELKPLLFEGMM-ANG-IAPGGQLTTTTDVENFPG----------------- 62 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhc------ccCceEEeeee-ccC-cCCCceeeeeeccccCCC-----------------
Confidence 34699999999999999999999 99999999543 221 122332222111111111
Q ss_pred EEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccccc
Q 006539 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (641)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~ 266 (641)
+|. -+...+|.+.|++++++.|.+|+..+ |.++..... ...+.+..
T Consensus 63 ----------FPd--------gi~G~~l~d~mrkqs~r~Gt~i~tEt-Vskv~~ssk--pF~l~td~------------- 108 (322)
T KOG0404|consen 63 ----------FPD--------GITGPELMDKMRKQSERFGTEIITET-VSKVDLSSK--PFKLWTDA------------- 108 (322)
T ss_pred ----------CCc--------ccccHHHHHHHHHHHHhhcceeeeee-hhhccccCC--CeEEEecC-------------
Confidence 111 24567899999999999999998765 877776652 33455543
Q ss_pred ccceEEEcCEEEEcCCCCC
Q 006539 267 QRGVELRGRITLLAEGCRG 285 (641)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s 285 (641)
..+++|.||+|+|+..
T Consensus 109 ---~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 109 ---RPVTADAVILATGASA 124 (322)
T ss_pred ---CceeeeeEEEecccce
Confidence 6889999999999764
No 225
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.60 E-value=1.5e-05 Score=87.80 Aligned_cols=38 Identities=39% Similarity=0.552 Sum_probs=35.2
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~ 152 (641)
+|+|||||++||++|+.|++. |++|+|+|+++.+||.+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~------G~~v~v~E~~~~~GG~~ 38 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDA------GHEVDIYESRSFIGGKV 38 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCcEEEEEecCCCCcee
Confidence 489999999999999999998 99999999999888754
No 226
>PRK12831 putative oxidoreductase; Provisional
Probab=98.59 E-value=8.9e-08 Score=104.98 Aligned_cols=40 Identities=33% Similarity=0.511 Sum_probs=36.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~ 151 (641)
...||+|||||||||++|+.|++. |++|+|+|+...+|+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~------G~~V~v~e~~~~~GG~ 178 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM------GYDVTIFEALHEPGGV 178 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC------CCeEEEEecCCCCCCe
Confidence 467999999999999999999999 9999999998877764
No 227
>PRK07208 hypothetical protein; Provisional
Probab=98.58 E-value=8.1e-07 Score=98.37 Aligned_cols=41 Identities=44% Similarity=0.569 Sum_probs=38.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~ 152 (641)
+..||+|||||++||++|+.|+++ |++|+|+|+++.+||.+
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~------g~~v~v~E~~~~~GG~~ 43 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKR------GYPVTVLEADPVVGGIS 43 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHC------CCcEEEEecCCCCCcee
Confidence 467899999999999999999999 99999999999998865
No 228
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.58 E-value=4e-06 Score=87.84 Aligned_cols=42 Identities=45% Similarity=0.590 Sum_probs=38.9
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~ 152 (641)
....||||||||.+||++|+.|.+. |++|+|+|.++.+|+.+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~ka------G~~v~ilEar~r~GGR~ 46 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKA------GYQVQILEARDRVGGRS 46 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhc------CcEEEEEeccCCcCcee
Confidence 3468999999999999999999999 99999999999998876
No 229
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.58 E-value=4.5e-07 Score=108.24 Aligned_cols=122 Identities=23% Similarity=0.302 Sum_probs=76.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCcc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (641)
..+||+|||||||||+||+.|++. |++|+|+|+.+.+|+......
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~------G~~V~liD~~~~~GG~~~~~~----------------------------- 206 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARA------GARVILVDEQPEAGGSLLSEA----------------------------- 206 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCCCCCeeeccc-----------------------------
Confidence 468999999999999999999998 999999999988776321000
Q ss_pred EEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeCcccc--ccCCCc
Q 006539 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGI--AKDGSK 262 (641)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~--~~~g~~ 262 (641)
. .++ ..+...+...+.+++.+. +++++.++.|..+... +.+..+...+... ..++..
T Consensus 207 -------~--~~~---------g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~~--~~v~~v~~~~~~~~~~~~~~~ 266 (985)
T TIGR01372 207 -------E--TID---------GKPAADWAAATVAELTAMPEVTLLPRTTAFGYYDH--NTVGALERVTDHLDAPPKGVP 266 (985)
T ss_pred -------c--ccC---------CccHHHHHHHHHHHHhcCCCcEEEcCCEEEEEecC--CeEEEEEEeeeccccccCCcc
Confidence 0 000 011234545566666666 4999999999877431 2332222111000 001110
Q ss_pred ccccccceEEEcCEEEEcCCCCC
Q 006539 263 KENFQRGVELRGRITLLAEGCRG 285 (641)
Q Consensus 263 ~~~~~~g~~i~a~~vV~A~G~~s 285 (641)
-+.-.++++|.||+|+|+..
T Consensus 267 ---~~~~~~i~a~~VILATGa~~ 286 (985)
T TIGR01372 267 ---RERLWRIRAKRVVLATGAHE 286 (985)
T ss_pred ---ccceEEEEcCEEEEcCCCCC
Confidence 00113689999999999875
No 230
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.57 E-value=1.2e-06 Score=91.22 Aligned_cols=84 Identities=25% Similarity=0.394 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCch-hH
Q 006539 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL-SE 289 (641)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~v-r~ 289 (641)
...+.+.+.+.++++|++|+++++|.+++..+ +.+.+|.+.+ |.++.+|.||+|.|..+.- -.
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~-~~~~~v~~~~---------------g~~i~~~~vvlA~Grsg~dw~~ 235 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIED-NEVLGVKLTK---------------GEEIEADYVVLAPGRSGRDWFE 235 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecC-CceEEEEccC---------------CcEEecCEEEEccCcchHHHHH
Confidence 56788889999999999999999999999887 4466788876 7899999999999987742 23
Q ss_pred HHHHHcCCCcccccCccceeeEEEE
Q 006539 290 KLIKNFKLREKSHAQHQTYALGIKE 314 (641)
Q Consensus 290 ~l~~~~~~~~~~~~~~~~~~~g~~~ 314 (641)
.+.+++|+.. .+..+.+|++.
T Consensus 236 ~l~~K~Gv~~----~~~p~dIGVRv 256 (486)
T COG2509 236 MLHKKLGVKM----RAKPFDIGVRV 256 (486)
T ss_pred HHHHhcCccc----ccCCeeEEEEE
Confidence 3455667663 44466777763
No 231
>PRK09897 hypothetical protein; Provisional
Probab=98.57 E-value=6.8e-07 Score=98.65 Aligned_cols=40 Identities=35% Similarity=0.578 Sum_probs=33.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCc
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~ 151 (641)
.+|+||||||+|+++|..|.+. ...++|+|||++..+|..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~----~~~l~V~lfEp~~~~G~G 41 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQ----QTPLSISIFEQADEAGVG 41 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhc----CCCCcEEEEecCCCCCcc
Confidence 3799999999999999999885 235799999998877743
No 232
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.57 E-value=4.5e-07 Score=97.83 Aligned_cols=113 Identities=25% Similarity=0.276 Sum_probs=85.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccE
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (641)
.-.++|||||+.|+..|-.++++ |.+|+|+|+.+.+-. .+
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~L------G~~VTiie~~~~iLp------------------~~---------------- 212 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAAL------GSKVTVVERGDRILP------------------GE---------------- 212 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCCCC------------------cC----------------
Confidence 34599999999999999999999 999999999886422 11
Q ss_pred EEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccccc
Q 006539 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (641)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~ 266 (641)
-.++.+.+.+.+++.|+++++++.++.++..+++ + .|.+.+ |.
T Consensus 213 ------------------------D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~-v-~v~~~~------g~----- 255 (454)
T COG1249 213 ------------------------DPEISKELTKQLEKGGVKILLNTKVTAVEKKDDG-V-LVTLED------GE----- 255 (454)
T ss_pred ------------------------CHHHHHHHHHHHHhCCeEEEccceEEEEEecCCe-E-EEEEec------CC-----
Confidence 1266677778888888999999999999887755 3 566655 11
Q ss_pred ccceEEEcCEEEEcCCCCCchhHHHHHHcCCC
Q 006539 267 QRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (641)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~ 298 (641)
+.++++|.|+.|+|..+.+-.--++..|+.
T Consensus 256 --~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~ 285 (454)
T COG1249 256 --GGTIEADAVLVAIGRKPNTDGLGLENAGVE 285 (454)
T ss_pred --CCEEEeeEEEEccCCccCCCCCChhhcCce
Confidence 127899999999998887654223344444
No 233
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.56 E-value=2.6e-07 Score=99.45 Aligned_cols=77 Identities=16% Similarity=0.184 Sum_probs=62.0
Q ss_pred CCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcC
Q 006539 202 SNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAE 281 (641)
Q Consensus 202 ~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~ 281 (641)
...+..+++...+++.|...|.+.|+.|+.++.|++|....++ +.+|.|.. ..|++..||.|+
T Consensus 177 y~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~-~~gVeT~~----------------G~iet~~~VNaa 239 (856)
T KOG2844|consen 177 YSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDK-FGGVETPH----------------GSIETECVVNAA 239 (856)
T ss_pred ecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCC-ccceeccC----------------cceecceEEech
Confidence 3445567899999999999999999999999999999877754 44898876 478999999999
Q ss_pred CCCCchhHHHHHHcCCC
Q 006539 282 GCRGSLSEKLIKNFKLR 298 (641)
Q Consensus 282 G~~s~vr~~l~~~~~~~ 298 (641)
|.|.+ .+-...++.
T Consensus 240 GvWAr---~Vg~m~gvk 253 (856)
T KOG2844|consen 240 GVWAR---EVGAMAGVK 253 (856)
T ss_pred hHHHH---HhhhhcCCc
Confidence 99964 444444544
No 234
>PLN02676 polyamine oxidase
Probab=98.56 E-value=1.1e-05 Score=89.00 Aligned_cols=40 Identities=33% Similarity=0.590 Sum_probs=36.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCC-cEEEEcCCCCCCCcc
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAEVGAHI 152 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~-~V~viEk~~~~g~~~ 152 (641)
.+||+|||||++||++|+.|++. |+ +|+|+|++..+||..
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~------g~~~v~vlE~~~~~GG~~ 66 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEA------GIEDILILEATDRIGGRM 66 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc------CCCcEEEecCCCCCCCcc
Confidence 67999999999999999999998 98 599999999888754
No 235
>PLN02487 zeta-carotene desaturase
Probab=98.56 E-value=3.6e-05 Score=85.91 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCEEecCceEEEEEEcC--CC--cEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCC
Q 006539 213 QLVRWLGGKAEELGVEIYPGFAASEILYDA--DN--KVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (641)
Q Consensus 213 ~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~--~g--~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~ 284 (641)
.|.+-+.+.+++.|++|+++++|.+|+.+. ++ ++++|++.+ ++ .+..+.+|.||.|.+.+
T Consensus 296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-----~~-------~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-----AT-------EKEIVKADAYVAACDVP 359 (569)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-----CC-------CceEEECCEEEECCCHH
Confidence 467778888889999999999999999873 33 367888731 11 14578999999999977
No 236
>COG1146 Ferredoxin [Energy production and conversion]
Probab=98.56 E-value=5.8e-08 Score=76.30 Aligned_cols=59 Identities=22% Similarity=0.375 Sum_probs=48.2
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEECCC
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPE 631 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~p~ 631 (641)
|++.|..|. .|+.+||.+++.+.++. ++..+.+|.+.|++||.|...||.+||......
T Consensus 6 d~~~C~~c~------~C~~~CP~~~~~~~~~~-~~~~~~~~~e~C~~C~~C~~~CP~~aI~~~~~~ 64 (68)
T COG1146 6 DYDKCIGCG------ICVEVCPAGVFDLGEDE-GGKPVVARPEECIDCGLCELACPVGAIKVDILR 64 (68)
T ss_pred CchhcCCCC------hheeccChhhEEecccc-CcceeEeccccCccchhhhhhCCcceEEEeccc
Confidence 677788754 79999999999986432 344699999999999999999999999855443
No 237
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.53 E-value=2.4e-06 Score=92.45 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCC
Q 006539 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (641)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s 285 (641)
.+.|.+.|.+.+...|.+|+.++.|++|..++++++++|++.+ |++++||.||......+
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~---------------Ge~i~a~~VV~~~s~~p 290 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEG---------------GEVAKCKLVICDPSYFP 290 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECC---------------CcEEECCEEEECccccc
Confidence 3677788888888899999999999999988767788898876 67899999998666554
No 238
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.52 E-value=3.1e-07 Score=85.21 Aligned_cols=142 Identities=23% Similarity=0.302 Sum_probs=75.6
Q ss_pred EEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChH----HHHHh-hhhhhhcCCCeeeeccCcc
Q 006539 111 VIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPR----ALNEL-LPQWKQEEAPIRVPVSSDK 185 (641)
Q Consensus 111 vIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~----~l~~l-~~~~~~~~~~~~~~~~~~~ 185 (641)
+|||||++|++++..|.+.. ...+..+|+|||+.+. |. |+...+. .+... ...+.. ........
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-~~~~~~~I~vfd~~~~-G~----G~~~~~~~~~~~llN~~a~~~s~-----~~~~~~~~ 69 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-DPKPPLEITVFDPSPF-GA----GGAYRPDQPPSHLLNTPADQMSL-----FPDDPGDD 69 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCc-cc----cccCCCCCChHHhhccccccccc-----ccccCCCC
Confidence 59999999999999999974 2334789999999654 42 2222221 11100 000000 00000011
Q ss_pred E-EEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHH------cCCEEe-cCceEEEEEEcCCCcEEEEEeCccccc
Q 006539 186 F-WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEE------LGVEIY-PGFAASEILYDADNKVIGIGTNDMGIA 257 (641)
Q Consensus 186 ~-~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~------~Gv~i~-~g~~v~~i~~~~~g~v~~V~~~~~g~~ 257 (641)
+ .|+.....-. .......-.++|..+-++|.+.+.+ .|++|. ...+|+++...+++. .|.+.+
T Consensus 70 f~~Wl~~~~~~~---~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~--~v~~~~---- 140 (156)
T PF13454_consen 70 FVDWLRANGADE---AEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGY--RVVTAD---- 140 (156)
T ss_pred HHHHHHhcCccc---ccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcE--EEEECC----
Confidence 1 1111111000 0000112235666666666554433 243322 355888998887663 466665
Q ss_pred cCCCcccccccceEEEcCEEEEcCCC
Q 006539 258 KDGSKKENFQRGVELRGRITLLAEGC 283 (641)
Q Consensus 258 ~~g~~~~~~~~g~~i~a~~vV~A~G~ 283 (641)
|..+.+|.||+|+|.
T Consensus 141 -----------g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 141 -----------GQSIRADAVVLATGH 155 (156)
T ss_pred -----------CCEEEeCEEEECCCC
Confidence 678999999999994
No 239
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.51 E-value=1.2e-06 Score=100.06 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=29.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCC-cEEEEcCCC
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGA 146 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~-~V~viEk~~ 146 (641)
.-.|+|||||..|+-+|..|.+. |. +|+|++++.
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~------Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRL------GAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCCeEEEeeecC
Confidence 34699999999999999999998 86 599998765
No 240
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.49 E-value=8.5e-06 Score=85.66 Aligned_cols=64 Identities=27% Similarity=0.330 Sum_probs=54.9
Q ss_pred cEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCC
Q 006539 206 NYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (641)
Q Consensus 206 ~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s 285 (641)
...++...+...|.+.+.+.|++++.+++|+++..++ +.+.+|.+.+ | +++||.||+|+|.++
T Consensus 131 ~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~-~~~~~v~~~~---------------g-~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 131 DAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRG-EKVTAIVTPS---------------G-DVQADQVVLAAGAWA 193 (337)
T ss_pred CceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeC-CEEEEEEcCC---------------C-EEECCEEEEcCChhh
Confidence 4567889999999999999999999999999998765 5566787765 4 789999999999987
Q ss_pred c
Q 006539 286 S 286 (641)
Q Consensus 286 ~ 286 (641)
.
T Consensus 194 ~ 194 (337)
T TIGR02352 194 G 194 (337)
T ss_pred h
Confidence 4
No 241
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.48 E-value=1.6e-07 Score=98.87 Aligned_cols=171 Identities=23% Similarity=0.345 Sum_probs=101.3
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc------ccccccC-hHHHHHh--------hhh
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI------ISGNVFE-PRALNEL--------LPQ 169 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~------~~g~~i~-~~~l~~l--------~~~ 169 (641)
..+|||+|||||-.|.-+|+-++-+ |++|+++|+++...|+. ..||+=. .+++.+| ...
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TR------GLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~lD~~qyrlV~ea 138 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATR------GLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNLDYEQYRLVKEA 138 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcc------cceeEEEecccccCCccccchhhhcccHHHHHHHHHhcCHHHHHHHHHH
Confidence 3579999999999999999999998 99999999998765543 1233211 0111111 000
Q ss_pred hhhc------------CCCeeeec----cCccE-------EEee------------cCccccCCCCCCCC---CcEE---
Q 006539 170 WKQE------------EAPIRVPV----SSDKF-------WFLT------------KDRAFSLPSPFSNR---GNYV--- 208 (641)
Q Consensus 170 ~~~~------------~~~~~~~~----~~~~~-------~~~~------------~~~~~~~~~~~~~~---~~~~--- 208 (641)
+.+. ..|+-.++ ....+ .++. ....+..-+.++.. +..+
T Consensus 139 L~ER~~lle~APhLs~~lPImlPvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~~~L~Ga~VYyD 218 (680)
T KOG0042|consen 139 LNERANLLEIAPHLSQPLPIMLPVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPMLRKDNLKGAMVYYD 218 (680)
T ss_pred HHHHHHHhhcCccccCCcceeeehhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCccccccCceeEEEEec
Confidence 0000 01111111 00000 1111 11111111111111 1111
Q ss_pred --eeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 209 --ISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 209 --v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
.+-..+.-.+.=.|.++|..+..-.+|.++..++++++.|+...|. -+|++ .+|+|+.||.|+|..+-
T Consensus 219 GQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~---iTG~e-------~~I~Ak~VVNATGpfsD 288 (680)
T KOG0042|consen 219 GQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDH---ITGKE-------YEIRAKVVVNATGPFSD 288 (680)
T ss_pred CCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEe---ecCcE-------EEEEEEEEEeCCCCccH
Confidence 2334555556666788999999999999999999898889988872 34543 78999999999999874
Q ss_pred hhHHH
Q 006539 287 LSEKL 291 (641)
Q Consensus 287 vr~~l 291 (641)
--+++
T Consensus 289 sIr~M 293 (680)
T KOG0042|consen 289 SIRKM 293 (680)
T ss_pred HHHhh
Confidence 33334
No 242
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.46 E-value=1.3e-06 Score=92.10 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHH-cCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCch
Q 006539 211 LSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 211 ~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~v 287 (641)
...+.+.|.+++.+ .+|+|+.++.+.++..+++..+.||.+.+. .++ -.++.|+.||+|+|.-+.+
T Consensus 132 G~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~----~~~-------~~~~~a~~vVLATGG~g~l 198 (518)
T COG0029 132 GKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNR----NGE-------LGTFRAKAVVLATGGLGGL 198 (518)
T ss_pred cHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecC----CCe-------EEEEecCeEEEecCCCccc
Confidence 46788889988887 689999999999998887435668887651 111 2689999999999998754
No 243
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.46 E-value=1e-06 Score=96.61 Aligned_cols=113 Identities=20% Similarity=0.340 Sum_probs=70.1
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEEE
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (641)
+|||||||+||+++|..|+++ +++.+|+|||+.+..+... ++ + + ++
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~----~~~~~Vtli~~~~~~~~~~-~~--~---------~------------------~~ 47 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRL----NKELEITVYEKTDIVSFGA-CG--L---------P------------------YF 47 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHH----CCCCcEEEEECCCcceeec-CC--C---------c------------------eE
Confidence 599999999999999999987 3356999999987643210 00 0 0 00
Q ss_pred eecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccccccc
Q 006539 189 LTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQR 268 (641)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~ 268 (641)
.. +..-....+.....+.+++.|++++.+++|+++..++. .+ .+.... .
T Consensus 48 ~~---------------~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~-~v-~~~~~~--------------~ 96 (444)
T PRK09564 48 VG---------------GFFDDPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNK-TI-TVKNLK--------------T 96 (444)
T ss_pred ec---------------cccCCHHHhhcCCHHHHHHCCCeEEecCEEEEEECCCC-EE-EEEECC--------------C
Confidence 00 00000112222233455678999999999999876652 22 232211 1
Q ss_pred ceEEE--cCEEEEcCCCCCc
Q 006539 269 GVELR--GRITLLAEGCRGS 286 (641)
Q Consensus 269 g~~i~--a~~vV~A~G~~s~ 286 (641)
+.+++ +|.+|+|+|+++.
T Consensus 97 ~~~~~~~yd~lviAtG~~~~ 116 (444)
T PRK09564 97 GSIFNDTYDKLMIATGARPI 116 (444)
T ss_pred CCEEEecCCEEEECCCCCCC
Confidence 34455 9999999998764
No 244
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=2.9e-07 Score=91.82 Aligned_cols=115 Identities=26% Similarity=0.451 Sum_probs=83.5
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCc
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~ 184 (641)
...|||+||||||||.+||+..+|. |++.-|+-. .+|+.. ++.-.++.++.
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARK------GiRTGl~ae--rfGGQv-----ldT~~IENfIs---------------- 259 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARK------GIRTGLVAE--RFGGQV-----LDTMGIENFIS---------------- 259 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhh------cchhhhhhh--hhCCee-----ccccchhheec----------------
Confidence 3569999999999999999999999 999877642 345422 22222211110
Q ss_pred cEEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcC-CCcEEEEEeCccccccCCCcc
Q 006539 185 KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDA-DNKVIGIGTNDMGIAKDGSKK 263 (641)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~-~g~v~~V~~~~~g~~~~g~~~ 263 (641)
.| .....+|...|.+..++..|++...-++++++... .+....|++.+
T Consensus 260 ------------v~---------~teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~n---------- 308 (520)
T COG3634 260 ------------VP---------ETEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELAN---------- 308 (520)
T ss_pred ------------cc---------cccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecC----------
Confidence 11 01245888899999999999999888888887632 23456788876
Q ss_pred cccccceEEEcCEEEEcCCCC
Q 006539 264 ENFQRGVELRGRITLLAEGCR 284 (641)
Q Consensus 264 ~~~~~g~~i~a~~vV~A~G~~ 284 (641)
|-.++++.||+|+|++
T Consensus 309 -----GavLkaktvIlstGAr 324 (520)
T COG3634 309 -----GAVLKARTVILATGAR 324 (520)
T ss_pred -----CceeccceEEEecCcc
Confidence 7899999999999976
No 245
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.45 E-value=3.1e-06 Score=90.95 Aligned_cols=61 Identities=26% Similarity=0.268 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCC
Q 006539 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (641)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s 285 (641)
..++.+.|.+.+++.|++++.+++|++++.++ +.+..|.+.+ |. ...+++|.||+|+|...
T Consensus 258 G~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~-~~V~~v~~~~------g~-------~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 258 GLRLQNALRRAFERLGGRIMPGDEVLGAEFEG-GRVTAVWTRN------HG-------DIPLRARHFVLATGSFF 318 (422)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEeeC------Cc-------eEEEECCEEEEeCCCcc
Confidence 34677888888889999999999999998776 4554554332 21 25789999999999753
No 246
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.45 E-value=3.1e-07 Score=106.90 Aligned_cols=40 Identities=38% Similarity=0.488 Sum_probs=36.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~ 151 (641)
...+|+|||||||||++|..|++. |++|+|+|+...+|+.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~------G~~V~v~e~~~~~GG~ 469 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKR------GYDVTVFEALHEIGGV 469 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC------CCeEEEEecCCCCCCe
Confidence 357999999999999999999999 9999999998777763
No 247
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.45 E-value=4e-06 Score=89.02 Aligned_cols=64 Identities=25% Similarity=0.294 Sum_probs=51.4
Q ss_pred eeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCC-Cc
Q 006539 209 ISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR-GS 286 (641)
Q Consensus 209 v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~-s~ 286 (641)
+....|.+.|.+.++++|++++.+.+|.++..++ +.+..|.+.+.+ ..+++||.+|+|+|+| |.
T Consensus 260 v~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~-~~v~~V~t~~g~-------------~~~l~AD~vVLAaGaw~S~ 324 (419)
T TIGR03378 260 LLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEG-NRVTRIHTRNHR-------------DIPLRADHFVLASGSFFSN 324 (419)
T ss_pred CcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeC-CeEEEEEecCCc-------------cceEECCEEEEccCCCcCH
Confidence 3457788889999999999999999999998776 556677765410 1579999999999999 73
No 248
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.45 E-value=2.5e-07 Score=72.64 Aligned_cols=35 Identities=40% Similarity=0.585 Sum_probs=32.1
Q ss_pred EECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc
Q 006539 112 IVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (641)
Q Consensus 112 IVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~ 152 (641)
|||||++||++|+.|++. |++|+|+|+.+.+|+..
T Consensus 1 IiGaG~sGl~aA~~L~~~------g~~v~v~E~~~~~GG~~ 35 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA------GYRVTVFEKNDRLGGRA 35 (68)
T ss_dssp EES-SHHHHHHHHHHHHT------TSEEEEEESSSSSSGGG
T ss_pred CEeeCHHHHHHHHHHHHC------CCcEEEEecCcccCcce
Confidence 899999999999999999 99999999999998854
No 249
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.42 E-value=4.3e-07 Score=99.33 Aligned_cols=40 Identities=38% Similarity=0.490 Sum_probs=36.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~ 151 (641)
..+||+|||||||||++|..|++. |++|+|+|+.+.+|+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~------G~~V~vie~~~~~GG~ 171 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKA------GHSVTVFEALHKPGGV 171 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC------CCcEEEEecCCCCCcE
Confidence 457999999999999999999998 9999999998877663
No 250
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.41 E-value=3.5e-07 Score=108.68 Aligned_cols=38 Identities=42% Similarity=0.531 Sum_probs=35.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCC
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~ 150 (641)
..+|+|||||||||++|..|++. |++|+|+|+...+|+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~------G~~VtV~E~~~~~GG 467 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKY------GVDVTVYEALHVVGG 467 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCCcc
Confidence 57899999999999999999999 999999999887776
No 251
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.39 E-value=8.1e-07 Score=97.60 Aligned_cols=39 Identities=38% Similarity=0.624 Sum_probs=35.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCC
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~ 150 (641)
...+|+|||||||||++|..|++. |++|+|+|+.+.+|+
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~------g~~V~lie~~~~~gG 177 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARK------GYDVTIFEARDKAGG 177 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC------CCeEEEEccCCCCCc
Confidence 457899999999999999999999 999999999987765
No 252
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.39 E-value=9.8e-07 Score=96.30 Aligned_cols=41 Identities=27% Similarity=0.349 Sum_probs=35.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCc
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~ 151 (641)
..+|+||||||||+++|..|++. .+|++|+|+|+.+.+|+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~----~~g~~Vtv~E~~p~pgGl 66 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKA----HDGARVDIIERLPTPFGL 66 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhh----CCCCeEEEEecCCCCcce
Confidence 46799999999999999999872 129999999999988774
No 253
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.37 E-value=2.7e-06 Score=91.08 Aligned_cols=110 Identities=16% Similarity=0.258 Sum_probs=70.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccE
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (641)
..+|||||||+||+++|..|.+. .+..+|+||++.+...-. ...+ +. .+..
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~----~~~~~Itvi~~~~~~~y~---~~~l-~~----~~~~----------------- 52 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQ----DAHIPITLITADSGDEYN---KPDL-SH----VFSQ----------------- 52 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhh----CcCCCEEEEeCCCCCCcC---cCcC-cH----HHhC-----------------
Confidence 35899999999999999999886 457799999987642110 0000 00 0000
Q ss_pred EEeecCccccCCCCCCCCCcEEeeHHHHHH-HHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccc
Q 006539 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVR-WLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (641)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~-~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~ 265 (641)
.....++.. ...+.+++.|++++.+++|+++..+. + .|.+.
T Consensus 53 ---------------------~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~--~--~v~~~------------- 94 (377)
T PRK04965 53 ---------------------GQRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEA--Q--VVKSQ------------- 94 (377)
T ss_pred ---------------------CCCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCC--C--EEEEC-------------
Confidence 001122221 12334467899999999999887654 2 24443
Q ss_pred cccceEEEcCEEEEcCCCCCc
Q 006539 266 FQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 266 ~~~g~~i~a~~vV~A~G~~s~ 286 (641)
+.++.+|.||+|+|+.+.
T Consensus 95 ---~~~~~yd~LVlATG~~~~ 112 (377)
T PRK04965 95 ---GNQWQYDKLVLATGASAF 112 (377)
T ss_pred ---CeEEeCCEEEECCCCCCC
Confidence 468999999999998764
No 254
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.36 E-value=2.3e-06 Score=92.32 Aligned_cols=110 Identities=17% Similarity=0.181 Sum_probs=68.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
.+|||||||+||+++|..|++. ++..+|+|+++........ ..++.. ++...
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~----~~~~~I~li~~e~~~~y~r---~~l~~~----~~~~~----------------- 55 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQ----GFTGELHLFSDERHLPYER---PPLSKS----MLLED----------------- 55 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhh----CCCCCEEEeCCCCCCCCCC---CCCCHH----HHCCC-----------------
Confidence 4799999999999999999998 2234899999876543210 000000 00000
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
... ...... .+...+.||+++.++.|+.+..++ . .|.+.+
T Consensus 56 ---------~~~-----~~~~~~--------~~~~~~~~i~~~~g~~V~~id~~~-~---~v~~~~-------------- 95 (396)
T PRK09754 56 ---------SPQ-----LQQVLP--------ANWWQENNVHLHSGVTIKTLGRDT-R---ELVLTN-------------- 95 (396)
T ss_pred ---------Ccc-----ccccCC--------HHHHHHCCCEEEcCCEEEEEECCC-C---EEEECC--------------
Confidence 000 000000 112245789999999998887654 2 355554
Q ss_pred cceEEEcCEEEEcCCCCCc
Q 006539 268 RGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (641)
|.++.+|.+|+|+|+++.
T Consensus 96 -g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 96 -GESWHWDQLFIATGAAAR 113 (396)
T ss_pred -CCEEEcCEEEEccCCCCC
Confidence 578999999999999863
No 255
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.36 E-value=5.7e-06 Score=88.61 Aligned_cols=109 Identities=21% Similarity=0.261 Sum_probs=81.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
.+|+|||||+.|+.+|..|++. |.+|+++|+.+.+... .+
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~------g~~Vtlv~~~~~~l~~--------------~~-------------------- 181 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRA------GKAVTLVDNAASLLAS--------------LM-------------------- 181 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCeEEEEecCCcccch--------------hC--------------------
Confidence 4699999999999999999998 9999999987643210 00
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
...+...+.+.+++.||++++++.++++..+++ . ..|.+.+
T Consensus 182 -----------------------~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~-~-~~v~~~~-------------- 222 (377)
T PRK04965 182 -----------------------PPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDS-G-IRATLDS-------------- 222 (377)
T ss_pred -----------------------CHHHHHHHHHHHHhCCCEEEECCeEEEEEccCC-E-EEEEEcC--------------
Confidence 013445566777889999999999999876543 2 3466655
Q ss_pred cceEEEcCEEEEcCCCCCchhHHHHHHcCCC
Q 006539 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~ 298 (641)
|.++.+|.||.|+|..+.. .+.+..++.
T Consensus 223 -g~~i~~D~vI~a~G~~p~~--~l~~~~gl~ 250 (377)
T PRK04965 223 -GRSIEVDAVIAAAGLRPNT--ALARRAGLA 250 (377)
T ss_pred -CcEEECCEEEECcCCCcch--HHHHHCCCC
Confidence 6789999999999998752 354444544
No 256
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.35 E-value=3.9e-06 Score=98.02 Aligned_cols=111 Identities=27% Similarity=0.247 Sum_probs=84.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.++|||||+.|+.+|..|++. |.+|+|+|+.+.+-.. .+
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~------G~~VtvVe~~~~ll~~-----------------~l----------------- 185 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNL------GVETHVIEFAPMLMAE-----------------QL----------------- 185 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEeccccchhh-----------------hc-----------------
Confidence 3699999999999999999999 9999999987642110 00
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
-....+.+.+.+++.||+++.++.++++..++++.+..|.+.+
T Consensus 186 -----------------------d~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~d-------------- 228 (847)
T PRK14989 186 -----------------------DQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFAD-------------- 228 (847)
T ss_pred -----------------------CHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECC--------------
Confidence 0133455677778899999999999999765434445677665
Q ss_pred cceEEEcCEEEEcCCCCCchhHHHHHHcCCC
Q 006539 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~ 298 (641)
|.++.+|.||.|.|.++.. .+++..++.
T Consensus 229 -G~~i~~D~Vv~A~G~rPn~--~L~~~~Gl~ 256 (847)
T PRK14989 229 -GSELEVDFIVFSTGIRPQD--KLATQCGLA 256 (847)
T ss_pred -CCEEEcCEEEECCCcccCc--hHHhhcCcc
Confidence 6789999999999999874 366566654
No 257
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.35 E-value=1.9e-06 Score=89.02 Aligned_cols=74 Identities=16% Similarity=0.319 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHcCCEEecCceEEEEEEc-CCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCchhHHH
Q 006539 213 QLVRWLGGKAEELGVEIYPGFAASEILYD-ADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKL 291 (641)
Q Consensus 213 ~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~-~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l 291 (641)
....+|.....+.|++|+.++.|++|.++ +++++++|.+.+ .++.. .-..+.+|.||+|.|+-.+ -+|
T Consensus 194 ~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~----~~~~~-----~~~~~~ak~VIlaAGai~T--p~L 262 (296)
T PF00732_consen 194 AATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVD----NDGGV-----QRRIVAAKEVILAAGAIGT--PRL 262 (296)
T ss_dssp HHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEE----TTTSE-----EEEEEEEEEEEE-SHHHHH--HHH
T ss_pred hhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeee----cCCcc-----eeeeccceeEEeccCCCCC--hhh
Confidence 34455554444448999999999999875 446788999876 22220 0156789999999997543 345
Q ss_pred HHHcCC
Q 006539 292 IKNFKL 297 (641)
Q Consensus 292 ~~~~~~ 297 (641)
+...|+
T Consensus 263 Ll~SGi 268 (296)
T PF00732_consen 263 LLRSGI 268 (296)
T ss_dssp HHHTTE
T ss_pred hccccc
Confidence 545555
No 258
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.34 E-value=9.6e-07 Score=97.02 Aligned_cols=39 Identities=36% Similarity=0.618 Sum_probs=35.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCC
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~ 150 (641)
...+|+||||||+||++|..|++. |++|+|+|+.+.+|+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~------G~~V~i~e~~~~~gG 178 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA------GVQVVVFDRHPEIGG 178 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCCc
Confidence 457899999999999999999998 999999999988776
No 259
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.34 E-value=8.1e-07 Score=101.82 Aligned_cols=40 Identities=38% Similarity=0.562 Sum_probs=36.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~ 151 (641)
...+|+|||||||||++|..|++. |++|+|+|+.+.+|+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~------G~~V~V~E~~~~~GG~ 365 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN------GVAVTVYDRHPEIGGL 365 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCce
Confidence 357899999999999999999999 9999999999887763
No 260
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.34 E-value=2.5e-06 Score=84.30 Aligned_cols=172 Identities=20% Similarity=0.338 Sum_probs=104.3
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc--cc------ccccChHHHHH--------h-h
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI--IS------GNVFEPRALNE--------L-L 167 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~--~~------g~~i~~~~l~~--------l-~ 167 (641)
..+||+||||||+.|++.|..|.-+ +|+++|.|+||...++-+. .+ |....|..|+. | +
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lr----hp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY 121 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLR----HPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLY 121 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhc----CCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHH
Confidence 3579999999999999999999876 6899999999998776543 12 22223444321 1 1
Q ss_pred hhhhhcCCC------eeeeccCcc------------------EEEeecCccccC-C-----CCCCCCCcEEeeHHHHHHH
Q 006539 168 PQWKQEEAP------IRVPVSSDK------------------FWFLTKDRAFSL-P-----SPFSNRGNYVISLSQLVRW 217 (641)
Q Consensus 168 ~~~~~~~~~------~~~~~~~~~------------------~~~~~~~~~~~~-~-----~~~~~~~~~~v~~~~l~~~ 217 (641)
....+...| +...+.... ++.++...-..+ | ..+......+++-+.+...
T Consensus 122 ~yc~e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls 201 (453)
T KOG2665|consen 122 EYCDEKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLS 201 (453)
T ss_pred HHhhhcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHH
Confidence 111111111 111111111 112211110011 1 1122333557888888888
Q ss_pred HHHHHHHcCCEEecCceEEEEEEcCCCc---EEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHH
Q 006539 218 LGGKAEELGVEIYPGFAASEILYDADNK---VIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKN 294 (641)
Q Consensus 218 L~~~a~~~Gv~i~~g~~v~~i~~~~~g~---v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~ 294 (641)
+.+..+..|.+++.+.++..+.++.++. -+.|.-. .+++++.+++|-|+|-.|. .+...
T Consensus 202 ~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ng---------------k~ee~r~~~~vtc~gl~sd---r~aa~ 263 (453)
T KOG2665|consen 202 FGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNG---------------KGEEKRTKNVVTCAGLQSD---RCAAL 263 (453)
T ss_pred HHHHHHHhcccccccceeccchhccCCCCCCceEEecC---------------ccceeEEeEEEEeccccHh---HHHHH
Confidence 8888899999999999999998776531 1122211 2688999999999998875 33444
Q ss_pred cCCC
Q 006539 295 FKLR 298 (641)
Q Consensus 295 ~~~~ 298 (641)
.+.+
T Consensus 264 sgc~ 267 (453)
T KOG2665|consen 264 SGCE 267 (453)
T ss_pred hCCC
Confidence 5555
No 261
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.34 E-value=6.2e-06 Score=88.91 Aligned_cols=108 Identities=27% Similarity=0.358 Sum_probs=81.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-+|+|||||+.|+.+|..|++. |.+|+|+|+.+.+....
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~------g~~Vtlv~~~~~~l~~~----------------------------------- 183 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQR------RCKVTVIELAATVMGRN----------------------------------- 183 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCcchhhh-----------------------------------
Confidence 4699999999999999999998 99999999877542210
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
....+.+.+.+.+++.||++++++.++++.. + +.+ .|.+.+
T Consensus 184 ----------------------~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~-~~~-~v~l~~-------------- 224 (396)
T PRK09754 184 ----------------------APPPVQRYLLQRHQQAGVRILLNNAIEHVVD-G-EKV-ELTLQS-------------- 224 (396)
T ss_pred ----------------------cCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-C-CEE-EEEECC--------------
Confidence 0123445567777889999999999999865 2 333 466655
Q ss_pred cceEEEcCEEEEcCCCCCchhHHHHHHcCCC
Q 006539 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~ 298 (641)
|.++.+|.||.|.|..+. ..+.+..++.
T Consensus 225 -g~~i~aD~Vv~a~G~~pn--~~l~~~~gl~ 252 (396)
T PRK09754 225 -GETLQADVVIYGIGISAN--DQLAREANLD 252 (396)
T ss_pred -CCEEECCEEEECCCCChh--hHHHHhcCCC
Confidence 678999999999999876 3355555544
No 262
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=98.33 E-value=4.2e-07 Score=85.86 Aligned_cols=57 Identities=14% Similarity=0.227 Sum_probs=48.0
Q ss_pred CCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEECC
Q 006539 567 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 630 (641)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~p 630 (641)
+..|..|. +-||+.+||+++..+.+ ++| -+.+|.+.||+||-|..+||++|...+.-
T Consensus 66 ~~~C~HC~----~ppCv~vCPtgA~~k~~-~dG--iV~vd~d~CIGC~yCi~ACPyga~~~~~~ 122 (203)
T COG0437 66 SISCMHCE----DPPCVKVCPTGALFKRE-EDG--IVLVDKDLCIGCGYCIAACPYGAPQFNPD 122 (203)
T ss_pred cccccCCC----CCcccccCCCcceEEec-CCC--EEEecCCcccCchHHHhhCCCCCceeCcc
Confidence 35677776 89999999999888764 234 69999999999999999999999987763
No 263
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.33 E-value=1.1e-06 Score=96.98 Aligned_cols=40 Identities=38% Similarity=0.589 Sum_probs=36.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~ 151 (641)
...+|+|||||||||++|..|++. |++|+|+|+.+.+|+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~------G~~V~vie~~~~~GG~ 181 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARA------GHKVTVFERADRIGGL 181 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC------CCcEEEEecCCCCCce
Confidence 357999999999999999999999 9999999999887763
No 264
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.32 E-value=1.8e-06 Score=91.46 Aligned_cols=36 Identities=31% Similarity=0.303 Sum_probs=33.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCC
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVG 149 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g 149 (641)
.||+|||||++|+.+|+.|++. |++|+|+|+++...
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~------Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKR------GVPVELYEMRPVKK 38 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCcEEEEEccCccC
Confidence 5899999999999999999999 99999999877553
No 265
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.32 E-value=2.8e-06 Score=92.77 Aligned_cols=37 Identities=22% Similarity=0.523 Sum_probs=32.3
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCC
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVG 149 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g 149 (641)
+|||||||+||+++|..|+++ .++.+|+|||+.+..+
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~----~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL----DKESDIIIFEKDRDMS 39 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh----CCCCCEEEEECCCCcc
Confidence 699999999999999999886 4578999999987543
No 266
>PLN03000 amine oxidase
Probab=98.31 E-value=0.00015 Score=83.33 Aligned_cols=41 Identities=39% Similarity=0.553 Sum_probs=37.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~ 152 (641)
...+|+|||||++||++|..|++. |++|+|+|++..+||.+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~------G~~V~VlE~~~riGGRi 223 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRF------GFKVTVLEGRKRPGGRV 223 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHC------CCcEEEEEccCcCCCCc
Confidence 358999999999999999999998 99999999999988865
No 267
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.30 E-value=9.8e-06 Score=89.45 Aligned_cols=38 Identities=39% Similarity=0.499 Sum_probs=35.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCc
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~ 151 (641)
|||+|||+||+|+++|..|++. |++|+|||++...++.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~------g~~v~~~e~~~~~~~~ 38 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA------GLKVAMVEIGAADSFL 38 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC------CCeEEEEeccCccCCC
Confidence 6999999999999999999999 9999999999988753
No 268
>CHL00065 psaC photosystem I subunit VII
Probab=98.30 E-value=1.8e-07 Score=76.37 Aligned_cols=58 Identities=22% Similarity=0.372 Sum_probs=45.2
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCC---CceeEEEecCCCccCCCccccCCCCCeeEEC
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEK---NQLKLQINAQNCLHCKACDIKDPKQNIKWTV 629 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~---~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~ 629 (641)
+.+.|+.|. .|+.+||.+++++.+.+. +.....++.+.|++|+.|..+||.+||+|++
T Consensus 7 ~~~~Ci~Cg------~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~ 67 (81)
T CHL00065 7 IYDTCIGCT------QCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRV 67 (81)
T ss_pred ccccCCChh------HHHHHCCccchhheeccccccccccccCCCCcCCChhhhhhhcCccccEEEE
Confidence 567898886 799999999988754211 1112356789999999999999999999876
No 269
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.29 E-value=1.6e-06 Score=89.71 Aligned_cols=61 Identities=23% Similarity=0.394 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCch
Q 006539 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~v 287 (641)
-+.+...+.+.+++.|.+|++...|.+|..++ |+++||.+.| |.+++++.||--++.|-..
T Consensus 263 ~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~-gka~GV~L~d---------------G~ev~sk~VvSNAt~~~Tf 323 (561)
T KOG4254|consen 263 MGAVSFAIAEGAKRAGAEIFTKATVQSILLDS-GKAVGVRLAD---------------GTEVRSKIVVSNATPWDTF 323 (561)
T ss_pred hhHHHHHHHHHHHhccceeeehhhhhheeccC-CeEEEEEecC---------------CcEEEeeeeecCCchHHHH
Confidence 36778889999999999999999999999988 8999999998 8899999999888877654
No 270
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=98.29 E-value=5e-07 Score=79.73 Aligned_cols=59 Identities=20% Similarity=0.362 Sum_probs=48.0
Q ss_pred cEEecCCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEEC
Q 006539 561 HLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 629 (641)
Q Consensus 561 hl~~~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~ 629 (641)
++.+ +.+.|+.|. .|+.+||.+++.+.++ . ..+.++.+.|+.||.|..+||++||++..
T Consensus 36 ~i~i-~~~~Ci~C~------~C~~~CP~~ai~~~~~-~--~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~ 94 (120)
T PRK08348 36 KILY-DVDKCVGCR------MCVTVCPAGVFVYLPE-I--RKVALWTGRCVFCGQCVDVCPTGALQMSD 94 (120)
T ss_pred eEEE-CcccCcCcc------cHHHHCCccceEcccc-c--cceEecCCcCcChhhhHHhCCcCcEEecc
Confidence 3444 678899886 7999999999987543 1 15788999999999999999999999764
No 271
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=8.5e-06 Score=81.31 Aligned_cols=54 Identities=20% Similarity=0.431 Sum_probs=46.4
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCC--------CCCCccccccccChHHHH
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA--------EVGAHIISGNVFEPRALN 164 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~--------~~g~~~~~g~~i~~~~l~ 164 (641)
..+||.||||||.+||++|-.+++. |.+|.++|--. -+|++|++.|||+.+-+.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~------G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMH 78 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADL------GAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMH 78 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhc------CCcEEEEeecccCCCCCccccCceeeecccccHHHHH
Confidence 3589999999999999999999999 99999998321 268889999999987664
No 272
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.28 E-value=3.2e-06 Score=90.06 Aligned_cols=108 Identities=17% Similarity=0.105 Sum_probs=70.9
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEEE
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (641)
+|||||||+||+.+|..|.++. .++.+|+|||+....--. + .++.+-.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~---~~~~~I~li~~~~~~~~~--------~-----~~~~~~~---------------- 48 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP---LPGVRVTLINPSSTTPYS--------G-----MLPGMIA---------------- 48 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC---CCCCEEEEECCCCCCccc--------c-----hhhHHHh----------------
Confidence 4899999999999999986541 247899999988653110 0 0111100
Q ss_pred eecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccccccc
Q 006539 189 LTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQR 268 (641)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~ 268 (641)
-.+...++...+.+.+++.|++++.+ .|+++..+++ .|.+.+
T Consensus 49 ------------------g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~id~~~~----~V~~~~--------------- 90 (364)
T TIGR03169 49 ------------------GHYSLDEIRIDLRRLARQAGARFVIA-EATGIDPDRR----KVLLAN--------------- 90 (364)
T ss_pred ------------------eeCCHHHhcccHHHHHHhcCCEEEEE-EEEEEecccC----EEEECC---------------
Confidence 00112233333455567789999876 6888876552 366655
Q ss_pred ceEEEcCEEEEcCCCCCc
Q 006539 269 GVELRGRITLLAEGCRGS 286 (641)
Q Consensus 269 g~~i~a~~vV~A~G~~s~ 286 (641)
|.++++|++|+|+|+...
T Consensus 91 g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 91 RPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred CCcccccEEEEccCCCCC
Confidence 567999999999998764
No 273
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.28 E-value=1.4e-06 Score=99.58 Aligned_cols=39 Identities=36% Similarity=0.564 Sum_probs=36.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCc
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~ 151 (641)
..+|+|||||||||++|+.|++. |++|+|+|+.+.+|+.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~------G~~Vtv~e~~~~~GG~ 231 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRK------GHDVTIFDANEQAGGM 231 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCce
Confidence 46899999999999999999999 9999999999888763
No 274
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=98.27 E-value=2.1e-06 Score=89.58 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=48.2
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEECC
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 630 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~p 630 (641)
.+..|..|. +.+|+.+||.+++...++ +| .+.||.+.|++|+.|..+||+++|.++.-
T Consensus 179 ~p~~C~HC~----nP~CV~ACPtGAI~k~ee-dG--iV~ID~dkCiGCg~CV~ACPygAI~~n~~ 236 (492)
T TIGR01660 179 LPRLCEHCL----NPACVASCPSGAIYKREE-DG--IVLIDQDKCRGWRMCISGCPYKKIYFNWK 236 (492)
T ss_pred CCCcCcCCC----cccchhhCccCCeEEecC-CC--eEEEehhhccChHHHHHhCCCCCcEecCC
Confidence 577888775 678999999999986432 23 57899999999999999999999998743
No 275
>PRK06370 mercuric reductase; Validated
Probab=98.25 E-value=1.7e-05 Score=87.46 Aligned_cols=102 Identities=22% Similarity=0.293 Sum_probs=75.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-+|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... .
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~------G~~Vtli~~~~~~l~~------~----------------------------- 210 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRF------GSEVTVIERGPRLLPR------E----------------------------- 210 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCeEEEEEcCCCCCcc------c-----------------------------
Confidence 4799999999999999999998 9999999987754220 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
-..+.+.+.+.+++.||++++++.|+++..++++..+.+...+
T Consensus 211 -----------------------~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~-------------- 253 (463)
T PRK06370 211 -----------------------DEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNG-------------- 253 (463)
T ss_pred -----------------------CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCC--------------
Confidence 0133445667778899999999999999876543222222211
Q ss_pred cceEEEcCEEEEcCCCCCch
Q 006539 268 RGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~v 287 (641)
++.++.+|.||.|+|..+..
T Consensus 254 ~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 254 GAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred CceEEEeCEEEECcCCCcCC
Confidence 13679999999999988764
No 276
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.24 E-value=1e-05 Score=89.28 Aligned_cols=103 Identities=24% Similarity=0.312 Sum_probs=75.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.|+|||||++|+.+|..|++. |.+|+|+|+.+.+... +
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~------g~~Vtli~~~~~il~~------------------~----------------- 219 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADF------GVEVTVVEAADRILPT------------------E----------------- 219 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCeEEEEEecCccCCc------------------C-----------------
Confidence 4799999999999999999998 9999999987643210 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
...+.+.+.+.+++.||+++.++.|+++..+.++.+..+.+.+ |+
T Consensus 220 -----------------------~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~------g~------ 264 (472)
T PRK05976 220 -----------------------DAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHN------GE------ 264 (472)
T ss_pred -----------------------CHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeC------Cc------
Confidence 1234455666778889999999999999752223343344333 21
Q ss_pred cceEEEcCEEEEcCCCCCch
Q 006539 268 RGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~v 287 (641)
..++.+|.||+|+|..+.+
T Consensus 265 -~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 265 -EKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred -eEEEEeCEEEEeeCCccCC
Confidence 1579999999999988764
No 277
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=98.23 E-value=7.7e-07 Score=89.28 Aligned_cols=58 Identities=12% Similarity=0.220 Sum_probs=48.4
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEECC
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 630 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~p 630 (641)
.+..|..|. ..+|+.+||.+++...++ +| .+.||.+.|++|+.|..+||++||.++.-
T Consensus 127 ~p~~C~hC~----nP~Cv~aCPtgAI~k~ee-dG--iV~ID~ekCiGCg~Cv~ACPygAi~~n~~ 184 (321)
T TIGR03478 127 LPRICNHCT----NPACLAACPTGAIYKREE-DG--IVLVDQERCKGYRYCVEACPYKKVYFNPQ 184 (321)
T ss_pred ecccCCCCC----CccchhhCCcCcEEEecC-CC--eEEECHHHCcchHHHHHhCCCCCcEecCC
Confidence 578888886 668999999999975432 23 68899999999999999999999998754
No 278
>PRK06116 glutathione reductase; Validated
Probab=98.23 E-value=1.2e-05 Score=88.25 Aligned_cols=99 Identities=19% Similarity=0.187 Sum_probs=77.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.|+|||||+.|+.+|..|++. |.+|+++++++.+... +
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~------g~~Vtlv~~~~~~l~~------------------~----------------- 206 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGL------GSETHLFVRGDAPLRG------------------F----------------- 206 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCccc------------------c-----------------
Confidence 4799999999999999999998 9999999987643110 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
-..+.+.+.+.+++.||+++.++.|.++..++++.+ .|.+.+
T Consensus 207 -----------------------~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~-------------- 248 (450)
T PRK06116 207 -----------------------DPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLED-------------- 248 (450)
T ss_pred -----------------------CHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcC--------------
Confidence 013445566777889999999999999987654533 466554
Q ss_pred cceEEEcCEEEEcCCCCCc
Q 006539 268 RGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (641)
|.++.+|.||.|+|..+.
T Consensus 249 -g~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 249 -GETLTVDCLIWAIGREPN 266 (450)
T ss_pred -CcEEEeCEEEEeeCCCcC
Confidence 568999999999997765
No 279
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.22 E-value=7.3e-06 Score=86.50 Aligned_cols=101 Identities=31% Similarity=0.476 Sum_probs=74.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcC-------CCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeee
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKN-------VDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRV 179 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~-------~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~ 179 (641)
..+|+|||||+.|..+|-.|+.....-. ..++|+|+|+.+.+-.+ +
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~------------------~--------- 207 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM------------------F--------- 207 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC------------------C---------
Confidence 3579999999999999999887643211 13589999988754321 1
Q ss_pred eccCccEEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccC
Q 006539 180 PVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (641)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~ 259 (641)
..++.+...+.++++||+|..++.|++++.+ +|++.+
T Consensus 208 -------------------------------~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~------~v~~~~------ 244 (405)
T COG1252 208 -------------------------------PPKLSKYAERALEKLGVEVLLGTPVTEVTPD------GVTLKD------ 244 (405)
T ss_pred -------------------------------CHHHHHHHHHHHHHCCCEEEcCCceEEECCC------cEEEcc------
Confidence 1255556667778999999999999988644 366655
Q ss_pred CCcccccccce-EEEcCEEEEcCCCCCc
Q 006539 260 GSKKENFQRGV-ELRGRITLLAEGCRGS 286 (641)
Q Consensus 260 g~~~~~~~~g~-~i~a~~vV~A~G~~s~ 286 (641)
|. +|.++.+|-|+|.+..
T Consensus 245 ---------g~~~I~~~tvvWaaGv~a~ 263 (405)
T COG1252 245 ---------GEEEIPADTVVWAAGVRAS 263 (405)
T ss_pred ---------CCeeEecCEEEEcCCCcCC
Confidence 34 6999999999998864
No 280
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.21 E-value=1.4e-05 Score=88.16 Aligned_cols=102 Identities=20% Similarity=0.241 Sum_probs=76.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
.+|+|||||++|+.+|..|++. |.+|+|+|+.+.+... +
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~l~~------------------~----------------- 209 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASL------GSKVTVIEMLDRILPG------------------E----------------- 209 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCcEEEEEcCCCCCCC------------------C-----------------
Confidence 4799999999999999999998 9999999987643210 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
...+.+.+.+.+++.||+++.++.|+++..++ +.+ .|.+.+ |+
T Consensus 210 -----------------------~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~v-~v~~~~------g~------ 252 (461)
T TIGR01350 210 -----------------------DAEVSKVVAKALKKKGVKILTNTKVTAVEKND-DQV-VYENKG------GE------ 252 (461)
T ss_pred -----------------------CHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC-CEE-EEEEeC------Cc------
Confidence 12344556677788899999999999997665 333 344433 11
Q ss_pred cceEEEcCEEEEcCCCCCchh
Q 006539 268 RGVELRGRITLLAEGCRGSLS 288 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~vr 288 (641)
..++.+|.||+|+|..+.+.
T Consensus 253 -~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 253 -TETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred -EEEEEeCEEEEecCCcccCC
Confidence 15799999999999887643
No 281
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.21 E-value=0.00016 Score=80.84 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=60.4
Q ss_pred EEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 207 YVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 207 ~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
..++...+...|.+.+.++|++|+++++|+++..++ +.+++|++.+. .+|+ ..+++|+.||.|+|.|+
T Consensus 123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~~~---~~g~-------~~~i~a~~VVnAaG~wa- 190 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREG-GRVTGVKVEDH---KTGE-------EERIEAQVVINAAGIWA- 190 (516)
T ss_pred cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC-CEEEEEEEEEc---CCCc-------EEEEEcCEEEECCCcch-
Confidence 467899999999999999999999999999998765 56667776431 1121 25799999999999997
Q ss_pred hhHHHHHHcCCC
Q 006539 287 LSEKLIKNFKLR 298 (641)
Q Consensus 287 vr~~l~~~~~~~ 298 (641)
.++.+..+++
T Consensus 191 --~~l~~~~g~~ 200 (516)
T TIGR03377 191 --GRIAEYAGLD 200 (516)
T ss_pred --HHHHHhcCCC
Confidence 4565555653
No 282
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.20 E-value=4.7e-05 Score=81.66 Aligned_cols=62 Identities=18% Similarity=0.163 Sum_probs=51.7
Q ss_pred EEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc
Q 006539 207 YVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 207 ~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
..++...+...|.+.+.+ |++++.++.|++++.+++ . +.|++.+ |..++||.||+|+|.++.
T Consensus 130 g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~-~-~~v~t~~---------------g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGE-G-WQLLDAN---------------GEVIAASVVVLANGAQAG 191 (381)
T ss_pred cccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCC-e-EEEEeCC---------------CCEEEcCEEEEcCCcccc
Confidence 356889999999999998 999999999999987653 3 4677765 566899999999999974
No 283
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.19 E-value=4.1e-06 Score=88.78 Aligned_cols=38 Identities=47% Similarity=0.579 Sum_probs=35.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCC
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~ 150 (641)
..+|+|||||++|+++|..|++. |++|+|+|+.+.+++
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~------g~~v~lie~~~~~gg 55 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACL------GYEVHVYDKLPEPGG 55 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC------CCcEEEEeCCCCCCc
Confidence 45899999999999999999998 999999999887765
No 284
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.19 E-value=1e-05 Score=86.33 Aligned_cols=37 Identities=32% Similarity=0.344 Sum_probs=33.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCC
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~ 150 (641)
.||+|||||++|+.+|+.|++. |++|+|+|+++..+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~------G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQA------GVPVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhC------CCcEEEEeccccccC
Confidence 3799999999999999999999 999999998876543
No 285
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.19 E-value=1.8e-05 Score=86.75 Aligned_cols=99 Identities=21% Similarity=0.140 Sum_probs=76.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.|+|||||..|+.+|..|++. |.+|+|+|+.+.+... +
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~------g~~Vtli~~~~~il~~------------------~----------------- 205 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGL------GSETHLVIRHERVLRS------------------F----------------- 205 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCCCcc------------------c-----------------
Confidence 4799999999999999999998 9999999988654210 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
-..+.+.+.+.+++.||+++.++.++++..++++.+ .|.+.+
T Consensus 206 -----------------------d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~-~v~~~~-------------- 247 (450)
T TIGR01421 206 -----------------------DSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKL-VIHFED-------------- 247 (450)
T ss_pred -----------------------CHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceE-EEEECC--------------
Confidence 013455566777889999999999999986543423 455544
Q ss_pred cc-eEEEcCEEEEcCCCCCc
Q 006539 268 RG-VELRGRITLLAEGCRGS 286 (641)
Q Consensus 268 ~g-~~i~a~~vV~A~G~~s~ 286 (641)
| ..+.+|.||.|.|..+.
T Consensus 248 -g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 248 -GKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred -CcEEEEcCEEEEeeCCCcC
Confidence 3 57899999999997765
No 286
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.18 E-value=1.5e-05 Score=87.91 Aligned_cols=99 Identities=19% Similarity=0.242 Sum_probs=76.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.|+|||||+.|+.+|..|++. |.+|+|+|+++.+... +
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------~----------------------------- 214 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAAL------GVKVTLINTRDRLLSF------L----------------------------- 214 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCcCCc------C-----------------------------
Confidence 4799999999999999999999 9999999987654210 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
-.++.+.|.+.+++.||+++.++.++++..++++ + .+.+.+
T Consensus 215 -----------------------d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~-~-~v~~~~-------------- 255 (461)
T PRK05249 215 -----------------------DDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDG-V-IVHLKS-------------- 255 (461)
T ss_pred -----------------------CHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCe-E-EEEECC--------------
Confidence 0234555677778889999999999999866533 3 355544
Q ss_pred cceEEEcCEEEEcCCCCCch
Q 006539 268 RGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~v 287 (641)
|.++.+|.||.|+|.++..
T Consensus 256 -g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 256 -GKKIKADCLLYANGRTGNT 274 (461)
T ss_pred -CCEEEeCEEEEeecCCccc
Confidence 5679999999999988763
No 287
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=98.18 E-value=6.2e-07 Score=75.04 Aligned_cols=58 Identities=19% Similarity=0.246 Sum_probs=45.6
Q ss_pred cCCCCcccccCCCCCCccccccCCeeEEEecCC-----------CCc----eeEEEecCCCccCCCccccCCCCCeeEE
Q 006539 565 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDE-----------KNQ----LKLQINAQNCLHCKACDIKDPKQNIKWT 628 (641)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~-----------~~~----~~~~~~~~~C~~C~~C~~~cp~~~i~w~ 628 (641)
.|.+.|+.|. .|+.+||.+++.+.... ++. ..+.+|.+.|+.||.|..+||++||+..
T Consensus 18 i~~~~Ci~C~------~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~C~~Cg~C~~~CP~~AI~~~ 90 (91)
T TIGR02936 18 IDQEKCIGCG------RCYKVCGRDVLTLKGINEEGELVASDDDDDEIERKVMVVANPGNCIGCGACARVCPKKCQTHA 90 (91)
T ss_pred ECHhHCCCcc------hHHHHcChhhceeeccccccccccccccccccccceeeecCCccCcChhhhhhhCCHhHEecC
Confidence 3889999986 79999999999875310 001 1246899999999999999999999864
No 288
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=98.17 E-value=1.5e-06 Score=87.61 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=50.1
Q ss_pred CcEEec-CCCCcccccCCCCCCccccccCC-eeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEECC
Q 006539 560 AHLRLR-DPKIPELVNLPEYAGPESRYCPA-RVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 630 (641)
Q Consensus 560 ~hl~~~-~~~~~~~~~~~~~~~~~~~~CP~-~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~p 630 (641)
.|+.+. .+..|..|. ..+|+.+||+ ++|...+ +| .+.+|.+.|++|+.|..+||+++|+|...
T Consensus 82 ~~~~~~~~~~~C~hC~----~p~Cv~aCP~~gA~~~~~--~G--~V~id~dkCigC~~Cv~aCP~~a~~~~~~ 146 (283)
T TIGR01582 82 DGLEWLIRKDGCMHCR----EPGCLKACPAPGAIIQYQ--NG--IVDFDHSKCIGCGYCIVGCPFNIPRYDKV 146 (283)
T ss_pred CCceEEECCccCCCCC----CccccCCCCcCCeEEEcC--CC--cEEEeHHHCCcchHHHhhCCCCCcEEcCC
Confidence 455432 556788886 6789999998 7887643 23 68899999999999999999999999764
No 289
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.17 E-value=5.3e-06 Score=96.85 Aligned_cols=109 Identities=22% Similarity=0.260 Sum_probs=71.1
Q ss_pred EEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEEEe
Q 006539 110 VVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWFL 189 (641)
Q Consensus 110 VvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 189 (641)
|||||||+||+++|..|.+.. ..+++|+|||+.+.++.... . |..++..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~---~~~~~Itvi~~e~~~~y~r~---~-----L~~~l~g-------------------- 49 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLN---RHMFEITIFGEEPHPNYNRI---L-----LSSVLQG-------------------- 49 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcC---CCCCeEEEEeCCCCCCcccc---c-----ccHHHCC--------------------
Confidence 689999999999999998761 13689999999886542100 0 0000000
Q ss_pred ecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccc
Q 006539 190 TKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRG 269 (641)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g 269 (641)
. ....++.....+.+++.||+++.+++|+++..+. + .|.+.+ |
T Consensus 50 --~----------------~~~~~l~~~~~~~~~~~gv~~~~g~~V~~Id~~~--k--~V~~~~---------------g 92 (785)
T TIGR02374 50 --E----------------ADLDDITLNSKDWYEKHGITLYTGETVIQIDTDQ--K--QVITDA---------------G 92 (785)
T ss_pred --C----------------CCHHHccCCCHHHHHHCCCEEEcCCeEEEEECCC--C--EEEECC---------------C
Confidence 0 0011111112233466899999999999987654 2 356655 5
Q ss_pred eEEEcCEEEEcCCCCCc
Q 006539 270 VELRGRITLLAEGCRGS 286 (641)
Q Consensus 270 ~~i~a~~vV~A~G~~s~ 286 (641)
.++.+|.||+|+|+.+.
T Consensus 93 ~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 93 RTLSYDKLILATGSYPF 109 (785)
T ss_pred cEeeCCEEEECCCCCcC
Confidence 78999999999998764
No 290
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.16 E-value=1.3e-05 Score=80.03 Aligned_cols=60 Identities=25% Similarity=0.253 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCC
Q 006539 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (641)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~ 284 (641)
.-.+.+.|..+.++.|+-+..|-+|.+.+... ++|.+|.+.+.. ...++||..|+|+|+.
T Consensus 257 GiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~-~~v~~i~trn~~-------------diP~~a~~~VLAsGsf 316 (421)
T COG3075 257 GIRLHNQLQRQFEQLGGLWMPGDEVKKATCKG-GRVTEIYTRNHA-------------DIPLRADFYVLASGSF 316 (421)
T ss_pred hhhHHHHHHHHHHHcCceEecCCceeeeeeeC-CeEEEEEecccc-------------cCCCChhHeeeecccc
Confidence 35677888888999999999999999999887 778888887621 2678999999999964
No 291
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.16 E-value=1.8e-05 Score=87.23 Aligned_cols=102 Identities=22% Similarity=0.254 Sum_probs=76.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-+|+|||||+.|+.+|..|++. |.+|+++|+.+.+... +
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------~----------------------------- 211 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASL------GAEVTIVEALPRILPG------E----------------------------- 211 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEEcCCCcCCc------C-----------------------------
Confidence 4799999999999999999998 9999999987653210 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
...+.+.+.+.+++.||+++.++.|+++..+++ .+ .|.+.+. |+
T Consensus 212 -----------------------~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~-~v-~v~~~~g-----g~------ 255 (462)
T PRK06416 212 -----------------------DKEISKLAERALKKRGIKIKTGAKAKKVEQTDD-GV-TVTLEDG-----GK------ 255 (462)
T ss_pred -----------------------CHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCC-EE-EEEEEeC-----Ce------
Confidence 024445566777889999999999999987653 33 3554430 11
Q ss_pred cceEEEcCEEEEcCCCCCch
Q 006539 268 RGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~v 287 (641)
..++.+|.||+|+|..+..
T Consensus 256 -~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 256 -EETLEADYVLVAVGRRPNT 274 (462)
T ss_pred -eEEEEeCEEEEeeCCccCC
Confidence 1578999999999988753
No 292
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=98.16 E-value=4.4e-07 Score=68.03 Aligned_cols=50 Identities=26% Similarity=0.410 Sum_probs=31.5
Q ss_pred cccccCCCCCCccccccCCeeEEEecCCCCce----eEEEecCCCccCCCccccCCCCCe
Q 006539 570 PELVNLPEYAGPESRYCPARVYEYVPDEKNQL----KLQINAQNCLHCKACDIKDPKQNI 625 (641)
Q Consensus 570 ~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~----~~~~~~~~C~~C~~C~~~cp~~~i 625 (641)
|+.|. .|+.+||++++++........ ....+.+.|++||.|..+||++||
T Consensus 2 Ci~Cg------~C~~~CP~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 2 CIGCG------RCVEACPVGVIEFDEDGGKKVVDKDNERRNAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp --TTT------HHHHHSTTT-EEEETTTTCEECSECCESTTGGG--TTCHHHHHSTTT-E
T ss_pred CCCcc------hHHHHCCccCeEccCccccccccccccCCCCCccccHhHHHHHcchhhC
Confidence 56665 799999999999875432110 011134589999999999999998
No 293
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.15 E-value=3.2e-05 Score=85.03 Aligned_cols=100 Identities=23% Similarity=0.260 Sum_probs=74.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-+|+|||||++|+.+|..|++. |.+|+|+|+.+.+... +
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~------g~~Vtli~~~~~ll~~------------------~----------------- 209 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRL------GTKVTIVEMAPQLLPG------------------E----------------- 209 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCcCcc------------------c-----------------
Confidence 4799999999999999999998 9999999987643210 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
..++.+.+.+.+++.||++++++.++++..++ ..+ .+.. + |+
T Consensus 210 -----------------------d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~-~~v-~~~~-~------g~------ 251 (458)
T PRK06912 210 -----------------------DEDIAHILREKLENDGVKIFTGAALKGLNSYK-KQA-LFEY-E------GS------ 251 (458)
T ss_pred -----------------------cHHHHHHHHHHHHHCCCEEEECCEEEEEEEcC-CEE-EEEE-C------Cc------
Confidence 02345556677788899999999999987554 222 2322 1 11
Q ss_pred cceEEEcCEEEEcCCCCCch
Q 006539 268 RGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~v 287 (641)
..++.+|.||+|+|..+.+
T Consensus 252 -~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 252 -IQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred -eEEEEeCEEEEecCCccCC
Confidence 1478999999999988764
No 294
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.15 E-value=9.5e-06 Score=94.84 Aligned_cols=111 Identities=18% Similarity=0.181 Sum_probs=71.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
.+|||||+|+||+.+|..|.+... .++++|+||++.+.+.-.. +. |...+..
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~--~~~~~Itvi~~e~~~~Y~r----~~----L~~~~~~------------------ 55 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKAD--AANFDITVFCEEPRIAYDR----VH----LSSYFSH------------------ 55 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCC--CCCCeEEEEECCCCCcccC----Cc----chHhHcC------------------
Confidence 379999999999999999986511 1368999999988654210 00 0000000
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
....++.....+..++.||+++.+++|+++..+. + .|.+.+
T Consensus 56 ---------------------~~~~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~--~--~V~~~~-------------- 96 (847)
T PRK14989 56 ---------------------HTAEELSLVREGFYEKHGIKVLVGERAITINRQE--K--VIHSSA-------------- 96 (847)
T ss_pred ---------------------CCHHHccCCCHHHHHhCCCEEEcCCEEEEEeCCC--c--EEEECC--------------
Confidence 0001111112233456899999999998886543 2 355554
Q ss_pred cceEEEcCEEEEcCCCCCc
Q 006539 268 RGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (641)
|.++.+|.+|+|+|+++.
T Consensus 97 -G~~i~yD~LVIATGs~p~ 114 (847)
T PRK14989 97 -GRTVFYDKLIMATGSYPW 114 (847)
T ss_pred -CcEEECCEEEECCCCCcC
Confidence 578999999999998864
No 295
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.15 E-value=3.8e-06 Score=95.98 Aligned_cols=39 Identities=36% Similarity=0.585 Sum_probs=36.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCc
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~ 151 (641)
..+|+||||||+||++|..|++. |++|+|+|+.+.+|+.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~------G~~Vtv~e~~~~~GG~ 348 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARA------GVQVDVFDRHPEIGGM 348 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHc------CCcEEEEeCCCCCCCe
Confidence 57899999999999999999999 9999999999887763
No 296
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.15 E-value=2.3e-05 Score=86.44 Aligned_cols=102 Identities=16% Similarity=0.213 Sum_probs=75.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-+|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... +
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------------------~----------------- 205 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARL------GSEVTILQRSDRLLPR------------------E----------------- 205 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCcEEEEEcCCcCCCc------------------c-----------------
Confidence 4799999999999999999998 9999999987643210 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
...+...+.+.+++.||+++.+++|+++..++++ + .|.+.. ++
T Consensus 206 -----------------------d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~-~-~v~~~~-----~~------- 248 (463)
T TIGR02053 206 -----------------------EPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGG-K-IITVEK-----PG------- 248 (463)
T ss_pred -----------------------CHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCE-E-EEEEEe-----CC-------
Confidence 0133445666677889999999999999765432 2 344422 01
Q ss_pred cceEEEcCEEEEcCCCCCch
Q 006539 268 RGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~v 287 (641)
.+.++.+|.||+|+|..+..
T Consensus 249 ~~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 249 GQGEVEADELLVATGRRPNT 268 (463)
T ss_pred CceEEEeCEEEEeECCCcCC
Confidence 13679999999999987753
No 297
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.13 E-value=2.6e-05 Score=85.30 Aligned_cols=98 Identities=20% Similarity=0.193 Sum_probs=74.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.|+|||||++|+.+|..|++. |.+|+|+|+.+.+... .
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~l~~------------------~----------------- 196 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKL------GSKVTVLDAASTILPR------------------E----------------- 196 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCccCCC------------------C-----------------
Confidence 4699999999999999999998 9999999987653210 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
...+.+.+.+.+++.||+++.++.|+++..++ +.+ .+.. +
T Consensus 197 -----------------------~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~-~~v-~v~~-~-------------- 236 (438)
T PRK07251 197 -----------------------EPSVAALAKQYMEEDGITFLLNAHTTEVKNDG-DQV-LVVT-E-------------- 236 (438)
T ss_pred -----------------------CHHHHHHHHHHHHHcCCEEEcCCEEEEEEecC-CEE-EEEE-C--------------
Confidence 01334445666788899999999999997654 333 2332 2
Q ss_pred cceEEEcCEEEEcCCCCCch
Q 006539 268 RGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~v 287 (641)
|.++.+|.||+|+|..+.+
T Consensus 237 -g~~i~~D~viva~G~~p~~ 255 (438)
T PRK07251 237 -DETYRFDALLYATGRKPNT 255 (438)
T ss_pred -CeEEEcCEEEEeeCCCCCc
Confidence 4679999999999988763
No 298
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.13 E-value=1e-05 Score=88.05 Aligned_cols=117 Identities=17% Similarity=0.214 Sum_probs=70.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccE
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (641)
..+|||||||.||+.+|..|.+. +.+|+|||+++..--. + +++.+..
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~------~~~ItlI~~~~~~~~~--------~-----~l~~~~~-------------- 56 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPK------KYNITVISPRNHMLFT--------P-----LLPQTTT-------------- 56 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcC------CCeEEEEcCCCCcchh--------h-----hHHHhcc--------------
Confidence 46899999999999999988765 7999999987643110 0 0111000
Q ss_pred EEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccccc
Q 006539 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (641)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~ 266 (641)
-......+..-+.+.+...|++++.+ +|++|..++ ..+ .+...+ .+.. .-
T Consensus 57 --------------------g~~~~~~~~~~~~~~~~~~~~~~i~~-~V~~Id~~~-~~v-~~~~~~----~~~~---~~ 106 (424)
T PTZ00318 57 --------------------GTLEFRSICEPVRPALAKLPNRYLRA-VVYDVDFEE-KRV-KCGVVS----KSNN---AN 106 (424)
T ss_pred --------------------cCCChHHhHHHHHHHhccCCeEEEEE-EEEEEEcCC-CEE-EEeccc----cccc---cc
Confidence 00112233333555566678888765 688887665 222 232211 0000 00
Q ss_pred ccceEEEcCEEEEcCCCCCc
Q 006539 267 QRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (641)
++|.++.+|++|+|+|+...
T Consensus 107 ~~g~~i~yD~LViAtGs~~~ 126 (424)
T PTZ00318 107 VNTFSVPYDKLVVAHGARPN 126 (424)
T ss_pred CCceEecCCEEEECCCcccC
Confidence 12568999999999999753
No 299
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.12 E-value=4.9e-05 Score=75.87 Aligned_cols=41 Identities=37% Similarity=0.606 Sum_probs=35.6
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCC--CCCc
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE--VGAH 151 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~--~g~~ 151 (641)
..++||||||+|.|||.+|..|+.. |.+|+|+|+..+ +|+.
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~a------G~~V~ildQEgeqnlGGQ 45 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADA------GKRVLILDQEGEQNLGGQ 45 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhc------CceEEEEcccccccccce
Confidence 3579999999999999999999999 999999998764 4443
No 300
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.12 E-value=2.6e-05 Score=91.12 Aligned_cols=109 Identities=25% Similarity=0.322 Sum_probs=82.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.|+|||||+.|+.+|..|++. |.+|+|+|+.+.+-.. .+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~------G~~Vtvv~~~~~ll~~-----------------~l----------------- 180 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNL------GMDVSVIHHAPGLMAK-----------------QL----------------- 180 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCeEEEEccCCchhhh-----------------hc-----------------
Confidence 4699999999999999999999 9999999987643110 00
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
-..+.+.+.+.+++.||+++.++.++++..+ +.+.+|.+.+
T Consensus 181 -----------------------d~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~--~~~~~v~~~d-------------- 221 (785)
T TIGR02374 181 -----------------------DQTAGRLLQRELEQKGLTFLLEKDTVEIVGA--TKADRIRFKD-------------- 221 (785)
T ss_pred -----------------------CHHHHHHHHHHHHHcCCEEEeCCceEEEEcC--CceEEEEECC--------------
Confidence 0133445667778899999999999888643 3455777766
Q ss_pred cceEEEcCEEEEcCCCCCchhHHHHHHcCCC
Q 006539 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~ 298 (641)
|.++.+|.||.|.|.++.. .+.+..++.
T Consensus 222 -G~~i~~D~Vi~a~G~~Pn~--~la~~~gl~ 249 (785)
T TIGR02374 222 -GSSLEADLIVMAAGIRPND--ELAVSAGIK 249 (785)
T ss_pred -CCEEEcCEEEECCCCCcCc--HHHHhcCCc
Confidence 6789999999999999864 355555544
No 301
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.12 E-value=3.5e-05 Score=84.52 Aligned_cols=108 Identities=21% Similarity=0.334 Sum_probs=79.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.|+|||||++|+.+|..|++. |.+|+++++.+.+.... +
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~l~~~-----------------~----------------- 189 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHL------GKNVRIIQLEDRILPDS-----------------F----------------- 189 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCcEEEEeCCcccCchh-----------------c-----------------
Confidence 4799999999999999999998 99999999766431100 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
...+.+.+.+.+++.||+++.+++++++..+ +.+..|.+.+
T Consensus 190 -----------------------~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~--~~~~~v~~~~-------------- 230 (444)
T PRK09564 190 -----------------------DKEITDVMEEELRENGVELHLNEFVKSLIGE--DKVEGVVTDK-------------- 230 (444)
T ss_pred -----------------------CHHHHHHHHHHHHHCCCEEEcCCEEEEEecC--CcEEEEEeCC--------------
Confidence 1245566777788899999999999998543 3444555543
Q ss_pred cceEEEcCEEEEcCCCCCchhHHHHHHcCCC
Q 006539 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~ 298 (641)
.++.+|.||.|+|..+.. .+++..++.
T Consensus 231 --~~i~~d~vi~a~G~~p~~--~~l~~~gl~ 257 (444)
T PRK09564 231 --GEYEADVVIVATGVKPNT--EFLEDTGLK 257 (444)
T ss_pred --CEEEcCEEEECcCCCcCH--HHHHhcCcc
Confidence 479999999999988752 344445543
No 302
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=98.12 E-value=1.2e-06 Score=74.93 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=45.2
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEE
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 628 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~ 628 (641)
|.+.|..|. .|+.+||.+++.+.++ + ...++.+.|+.|+.|..+||++||++.
T Consensus 49 d~~~Ci~C~------~C~~~CP~~ai~~~~~--~--~~~id~~~C~~Cg~Cv~~CP~~AI~~~ 101 (105)
T PRK09624 49 NRDKCVRCY------LCYIYCPEPAIYLDEE--G--YPVFDYDYCKGCGICANECPTKAIEMV 101 (105)
T ss_pred ChhHCcChh------hHHhhCCHhhEEecCC--C--cEEECchhCCCcCchhhhcCcCcEEEe
Confidence 678898886 7999999998887533 2 467899999999999999999999875
No 303
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.11 E-value=2.3e-05 Score=86.37 Aligned_cols=103 Identities=27% Similarity=0.332 Sum_probs=75.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... +
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~------G~~Vtlv~~~~~~l~~------------------~----------------- 211 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNY------GVDVTIVEFLDRALPN------------------E----------------- 211 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHc------CCeEEEEecCCCcCCc------------------c-----------------
Confidence 4799999999999999999998 9999999987643210 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
-..+.+.+.+.+++.||+++.++.|+++..++ +.+ .|.+.. .+|+
T Consensus 212 -----------------------d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~~-~v~~~~----~~g~------ 256 (466)
T PRK07818 212 -----------------------DAEVSKEIAKQYKKLGVKILTGTKVESIDDNG-SKV-TVTVSK----KDGK------ 256 (466)
T ss_pred -----------------------CHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC-CeE-EEEEEe----cCCC------
Confidence 01344556677788999999999999997654 322 344331 1122
Q ss_pred cceEEEcCEEEEcCCCCCch
Q 006539 268 RGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~v 287 (641)
..++.+|.||.|.|..+.+
T Consensus 257 -~~~i~~D~vi~a~G~~pn~ 275 (466)
T PRK07818 257 -AQELEADKVLQAIGFAPRV 275 (466)
T ss_pred -eEEEEeCEEEECcCcccCC
Confidence 1579999999999988764
No 304
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.11 E-value=3.7e-06 Score=90.88 Aligned_cols=41 Identities=39% Similarity=0.523 Sum_probs=37.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcccc
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIIS 154 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~ 154 (641)
..|.|||||||||++|..|++. |+.|+|+|+.+..|+-...
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~------G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRA------GHDVTVFERVALDGGLLLY 164 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhC------CCeEEEeCCcCCCceeEEe
Confidence 6799999999999999999999 9999999999998875433
No 305
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.11 E-value=3.4e-05 Score=85.01 Aligned_cols=104 Identities=22% Similarity=0.236 Sum_probs=75.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... +
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~------G~~Vtlie~~~~il~~------~----------------------------- 213 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRL------GAQVTVVEYLDRICPG------T----------------------------- 213 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEeCCCCCCCC------C-----------------------------
Confidence 4699999999999999999998 9999999987643210 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
-..+.+.+.+.+++.||+++.++.++++..++++. .+.+.+ ..+|+
T Consensus 214 -----------------------d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v--~v~~~~---~~~g~------ 259 (466)
T PRK06115 214 -----------------------DTETAKTLQKALTKQGMKFKLGSKVTGATAGADGV--SLTLEP---AAGGA------ 259 (466)
T ss_pred -----------------------CHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeE--EEEEEE---cCCCc------
Confidence 01344556677788899999999999997655332 233221 01121
Q ss_pred cceEEEcCEEEEcCCCCCch
Q 006539 268 RGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~v 287 (641)
+.++.+|.||+|.|..+.+
T Consensus 260 -~~~i~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 260 -AETLQADYVLVAIGRRPYT 278 (466)
T ss_pred -eeEEEeCEEEEccCCcccc
Confidence 3679999999999988753
No 306
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=98.11 E-value=2.1e-06 Score=81.19 Aligned_cols=58 Identities=22% Similarity=0.375 Sum_probs=48.0
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCC-CCceeEEEecCCCccCCCccccCCCCCeeEEC
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDE-KNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 629 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~-~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~ 629 (641)
|++.|..|. .|+.+||.+++.+..+. .+...+.++...|+.||.|..+||++||++..
T Consensus 36 d~~~Ci~Cg------~Cv~aCP~~Ai~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CPt~AI~~~~ 94 (181)
T PRK08222 36 MPSQCIACG------ACTCACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTN 94 (181)
T ss_pred ChhhCcchh------HHHHhCCccceEcccccccCccceeeccCcCcCCCCcccccCcCeEEecc
Confidence 678899886 79999999999876442 23345789999999999999999999998653
No 307
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.10 E-value=2e-05 Score=84.45 Aligned_cols=40 Identities=40% Similarity=0.639 Sum_probs=35.6
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~ 152 (641)
.|+|||||++||+||++|++. +|..+|+|+|+.+.+||..
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~----~p~~~i~lfE~~~r~GG~l 41 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKA----GPDVEVTLFEADDRVGGLL 41 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHh----CCCCcEEEEecCCCCCceE
Confidence 489999999999999999999 2339999999999998865
No 308
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=98.10 E-value=1.2e-06 Score=71.18 Aligned_cols=61 Identities=25% Similarity=0.357 Sum_probs=46.5
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCC---CceeEEEecCCCccCCCccccCCCCCeeEECCCC
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEK---NQLKLQINAQNCLHCKACDIKDPKQNIKWTVPEG 632 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~---~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~p~g 632 (641)
..+.|+.|. .|+.+||.+++.+.+.+. +...+.++.+.|+.||.|..+||+++|+|.+=.|
T Consensus 6 ~~~~Ci~C~------~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~ 69 (80)
T TIGR03048 6 IYDTCIGCT------QCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVGCKRCESACPTDFLSVRVYLG 69 (80)
T ss_pred cCCcCcCcc------hHHHHCCccceeeecccccccccccCcCCCCcCcChhHHHHhcCcccCEEEEecC
Confidence 557888886 699999999988754211 1112456779999999999999999999876444
No 309
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.10 E-value=6.2e-06 Score=91.04 Aligned_cols=39 Identities=38% Similarity=0.594 Sum_probs=35.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCc
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~ 151 (641)
..+|+|||||++|+++|..|++. |++|+|+|+.+.+|+.
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~------g~~V~v~e~~~~~gG~ 181 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRA------GHTVTVFEREDRCGGL 181 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc------CCeEEEEecCCCCCce
Confidence 46899999999999999999998 9999999999877653
No 310
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.10 E-value=8e-06 Score=87.98 Aligned_cols=40 Identities=30% Similarity=0.378 Sum_probs=34.6
Q ss_pred cccEEEECCCHHHHHHHHHHH-hhchhcCCCCcEEEEcCCCCCCCcc
Q 006539 107 AYDVVIVGAGPAGLSAAIRLK-QLCREKNVDLSVCVVEKGAEVGAHI 152 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La-~~~~~~~~G~~V~viEk~~~~g~~~ 152 (641)
...|+||||||||+.+|..|+ +. |++|+|+||.+.+||..
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~------g~~VtlfEk~p~pgGLv 79 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHE------RVKVDIFEKLPNPYGLI 79 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhc------CCeEEEEecCCCCccEE
Confidence 356999999999999999765 56 99999999999988744
No 311
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=98.09 E-value=2.4e-06 Score=73.10 Aligned_cols=61 Identities=18% Similarity=0.378 Sum_probs=47.7
Q ss_pred EEecCCCCcccccCCCCCCccccccCCeeEEEecCCC---CceeEEEecCCCccCCCccccCCCCCeeEEC
Q 006539 562 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEK---NQLKLQINAQNCLHCKACDIKDPKQNIKWTV 629 (641)
Q Consensus 562 l~~~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~---~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~ 629 (641)
+.+ |.+.|+.|. .|+.+||.+++.+.+... +.....++.+.|+.||.|..+||++||++.-
T Consensus 11 v~i-d~~~Ci~C~------~Cv~aCP~~ai~~~~~~~~~~~~~~~~i~~~~C~~C~~C~~~CP~~AI~~~~ 74 (103)
T PRK09626 11 VWV-DESRCKACD------ICVSVCPAGVLAMRIDPHAVLGKMIKVVHPESCIGCRECELHCPDFAIYVAD 74 (103)
T ss_pred eEE-CcccccCCc------chhhhcChhhhccccccccccCceeeEeCCccCCCcCcchhhCChhhEEEec
Confidence 444 888999886 799999999988754321 1123568899999999999999999998654
No 312
>PLN00071 photosystem I subunit VII; Provisional
Probab=98.08 E-value=1.4e-06 Score=71.08 Aligned_cols=62 Identities=21% Similarity=0.338 Sum_probs=46.7
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCC-C-c-eeEEEecCCCccCCCccccCCCCCeeEECCCCC
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEK-N-Q-LKLQINAQNCLHCKACDIKDPKQNIKWTVPEGG 633 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~-~-~-~~~~~~~~~C~~C~~C~~~cp~~~i~w~~p~gg 633 (641)
+.+.|..|. .|+.+||.+++++.+..+ . . ....++.+.|+.||.|..+||.+||++..=.|+
T Consensus 7 ~~~~C~~C~------~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~~~~~ 71 (81)
T PLN00071 7 IYDTCIGCT------QCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGH 71 (81)
T ss_pred cCCcCcChh------HHHHHCCccceeeecccccccccccCcCCCCcCcChhhHHhhcCCccceEeeeecc
Confidence 557898886 799999999998754211 1 1 112457899999999999999999998765544
No 313
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=98.07 E-value=3.5e-06 Score=68.20 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=44.7
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEE
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 628 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~ 628 (641)
+.+.|+.|. .|+.+||.+++.+.++ + ...++.+.|..|+.|..+||++||+..
T Consensus 23 ~~~~C~~C~------~C~~~Cp~~ai~~~~~--~--~~~i~~~~C~~C~~C~~~CP~~Ai~~~ 75 (78)
T TIGR02179 23 DKEKCIKCK------NCWLYCPEGAIQEDEG--G--FVGIDYDYCKGCGICANVCPVKAIEMV 75 (78)
T ss_pred cCCcCcChh------HHHhhcCccceEecCC--C--cEEecCccCcCccchhhhCCccccEec
Confidence 678898885 6999999999887532 1 477899999999999999999999764
No 314
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.07 E-value=3.3e-05 Score=84.64 Aligned_cols=98 Identities=19% Similarity=0.290 Sum_probs=75.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... +
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~------G~~Vtli~~~~~~l~~------------------~----------------- 205 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGL------GVQVTLIYRGELILRG------------------F----------------- 205 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHc------CCeEEEEEeCCCCCcc------------------c-----------------
Confidence 4699999999999999999998 9999999987643110 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
-.++.+.+.+.+++.||+++.++.++++..++++ + .|.+.+
T Consensus 206 -----------------------d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~-~-~v~~~~-------------- 246 (446)
T TIGR01424 206 -----------------------DDDMRALLARNMEGRGIRIHPQTSLTSITKTDDG-L-KVTLSH-------------- 246 (446)
T ss_pred -----------------------CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-E-EEEEcC--------------
Confidence 0134445666778889999999999999866544 2 355544
Q ss_pred cceEEEcCEEEEcCCCCCc
Q 006539 268 RGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (641)
|.++.+|.||+|+|..+.
T Consensus 247 -g~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 247 -GEEIVADVVLFATGRSPN 264 (446)
T ss_pred -CcEeecCEEEEeeCCCcC
Confidence 568999999999997764
No 315
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=98.07 E-value=3.6e-07 Score=67.66 Aligned_cols=49 Identities=20% Similarity=0.332 Sum_probs=32.8
Q ss_pred cccccCCCCCCccccccCCeeEEEecCC--CCceeEEEecCCCccCCCccccCCCCC
Q 006539 570 PELVNLPEYAGPESRYCPARVYEYVPDE--KNQLKLQINAQNCLHCKACDIKDPKQN 624 (641)
Q Consensus 570 ~~~~~~~~~~~~~~~~CP~~~~~~~~~~--~~~~~~~~~~~~C~~C~~C~~~cp~~~ 624 (641)
|+.|. .|+.+||.+++.+.+.. .+...+.+|.+.|++||.|..+||++|
T Consensus 2 C~~C~------~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~A 52 (52)
T PF12838_consen 2 CIGCG------ACVEACPTGAIRLDEEENEEGKPKMVIDPDKCTGCGACVEVCPTGA 52 (52)
T ss_dssp -SS--------HHHHH-TTHHCEEEETTT-SSSTTSEETGGG----SHHHHHTTTS-
T ss_pred CCCcC------chHHhcCccccCcccccccCCceEEEEechhCcCcChhhhhCcCcC
Confidence 55664 79999999999987542 233468999999999999999999986
No 316
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=98.07 E-value=1.1e-06 Score=77.64 Aligned_cols=55 Identities=16% Similarity=0.293 Sum_probs=44.2
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEe--cCCCCce---eEEEecCCCccCCCccccCCCCCee
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYV--PDEKNQL---KLQINAQNCLHCKACDIKDPKQNIK 626 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~--~~~~~~~---~~~~~~~~C~~C~~C~~~cp~~~i~ 626 (641)
..+.|+.|. -|..+||+.++.++ +..++.+ ++.||...||-||-|...||++||.
T Consensus 109 geerCIACk------lCeavCPaqaitieae~r~dgsrRttrYdIDmtkCIyCG~CqEaCPvdaiv 168 (212)
T KOG3256|consen 109 GEERCIACK------LCEAVCPAQAITIEAEERTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 168 (212)
T ss_pred cchhhhhHH------HHHHhCCcccceeeceecCCccccceeecccceeeeeecchhhhCCcccee
Confidence 357888886 69999999987764 3334432 4789999999999999999999996
No 317
>PTZ00058 glutathione reductase; Provisional
Probab=98.06 E-value=3.4e-05 Score=86.18 Aligned_cols=100 Identities=12% Similarity=0.105 Sum_probs=74.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.|+|||||..|+..|..|++. |.+|+|+|+++.+... +
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~------G~~Vtli~~~~~il~~------------------~----------------- 276 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRL------GAESYIFARGNRLLRK------------------F----------------- 276 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHc------CCcEEEEEeccccccc------------------C-----------------
Confidence 4699999999999999999999 9999999987643210 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
-..+.+.+.+.+++.||+++.++.+.++..++++.+ .+...+
T Consensus 277 -----------------------d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v-~v~~~~-------------- 318 (561)
T PTZ00058 277 -----------------------DETIINELENDMKKNNINIITHANVEEIEKVKEKNL-TIYLSD-------------- 318 (561)
T ss_pred -----------------------CHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcE-EEEECC--------------
Confidence 013445566677889999999999999986543333 233322
Q ss_pred cceEEEcCEEEEcCCCCCc
Q 006539 268 RGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (641)
++.++.+|.||.|+|..+.
T Consensus 319 ~~~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 319 GRKYEHFDYVIYCVGRSPN 337 (561)
T ss_pred CCEEEECCEEEECcCCCCC
Confidence 1357999999999998765
No 318
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.06 E-value=3.1e-05 Score=83.64 Aligned_cols=102 Identities=26% Similarity=0.427 Sum_probs=80.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccE
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (641)
..+|+|||+|++|+.+|..|+++ |++|+++|+.+.+++...
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~------G~~v~l~e~~~~~~~~~~--------------------------------- 176 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKR------GKKVTLIEAADRLGGQLL--------------------------------- 176 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHc------CCeEEEEEcccccchhhh---------------------------------
Confidence 36899999999999999999999 999999999987765210
Q ss_pred EEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEE-EEeCccccccCCCcccc
Q 006539 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIG-IGTNDMGIAKDGSKKEN 265 (641)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~-V~~~~~g~~~~g~~~~~ 265 (641)
. ..+.+.+.+..++.||+++.++.+.+++...+..... +...+
T Consensus 177 -----------------------~-~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~------------ 220 (415)
T COG0446 177 -----------------------D-PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGID------------ 220 (415)
T ss_pred -----------------------h-HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeC------------
Confidence 0 3556667788889999999999999998776332211 33333
Q ss_pred cccceEEEcCEEEEcCCCCCc
Q 006539 266 FQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 266 ~~~g~~i~a~~vV~A~G~~s~ 286 (641)
+..+.+|.++.+.|.++.
T Consensus 221 ---~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 221 ---GEEIKADLVIIGPGERPN 238 (415)
T ss_pred ---CcEEEeeEEEEeeccccc
Confidence 578999999999999985
No 319
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.06 E-value=3.9e-06 Score=91.84 Aligned_cols=42 Identities=40% Similarity=0.616 Sum_probs=38.9
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~ 152 (641)
....+|||||||+|||+||..|.+. |++|+|+|.++.+||.+
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~------G~~V~VLEARdRvGGRI 54 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDF------GFDVLVLEARDRVGGRI 54 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHc------CCceEEEeccCCcCcee
Confidence 3467899999999999999999999 99999999999999875
No 320
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=98.05 E-value=1.9e-06 Score=63.72 Aligned_cols=47 Identities=26% Similarity=0.409 Sum_probs=24.5
Q ss_pred CCCCcccccCCCCCCccccccCC-eeEEEecCCCCceeEEEecCCCccCCCccccCC
Q 006539 566 DPKIPELVNLPEYAGPESRYCPA-RVYEYVPDEKNQLKLQINAQNCLHCKACDIKDP 621 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~-~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp 621 (641)
|.+.|..|. .|+.+||+ ....+...+ ..+.++.++|++||.|..+||
T Consensus 5 d~~~C~~C~------~C~~~CP~~~~~~~~~~~---~~~~~~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 5 DEDKCIGCG------RCVKVCPADNAIAIDDGE---KKVEIDPERCIGCGACVEVCP 52 (52)
T ss_dssp -TT------------TTGGG-TT-----EEE-S---SSEEE-TTT--TTSHHHHH-T
T ss_pred CcccCcCCc------ChHHHccchhHHHhhccC---CCeEeCcccccccChhhhhCc
Confidence 789999986 79999999 333332221 258889999999999999998
No 321
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=98.05 E-value=3.2e-06 Score=80.18 Aligned_cols=58 Identities=21% Similarity=0.385 Sum_probs=47.8
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCC-CCceeEEEecCCCccCCCccccCCCCCeeEEC
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDE-KNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 629 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~-~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~ 629 (641)
|.+.|..|. .|+.+||.+++.+..+. .+...+.+|.+.|+.||.|..+||++||+++.
T Consensus 36 d~~~C~~C~------~Cv~~CP~~ai~~~~~~~~~~~~~~i~~~~C~~Cg~C~~vCP~~AI~~~~ 94 (180)
T PRK12387 36 NPQQCIGCA------ACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQ 94 (180)
T ss_pred ChhhCcChh------HHHHhcCccCeEeeccccCCcccceeccccCcCccchhhhcCcCceEccC
Confidence 678999886 79999999999876432 22234689999999999999999999998763
No 322
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.05 E-value=1.9e-05 Score=81.46 Aligned_cols=152 Identities=20% Similarity=0.290 Sum_probs=94.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc---ccccccChHHHHHhhhhhhhcCCCeeeecc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI---ISGNVFEPRALNELLPQWKQEEAPIRVPVS 182 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~---~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~ 182 (641)
..+|+|.||-||+-|++|+.|... .+.+++.+||.+....|. +.|..+....+..|. ....|
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~-----~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLV----Tl~~P------ 68 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEH-----SGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLV----TLVDP------ 68 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccc-----cCcceEEEecCCCCCcCCCcccCCccccccchhhhc----cccCC------
Confidence 468999999999999999999987 258899999998775542 222222222222211 00000
Q ss_pred CccEEEee---cCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEE--EEeCccccc
Q 006539 183 SDKFWFLT---KDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIG--IGTNDMGIA 257 (641)
Q Consensus 183 ~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~--V~~~~~g~~ 257 (641)
...+.|++ +...+ ..+-+.+.+.+.|.++.+++.-.+..+ -.+.+|+.|++|...+.+.... |.+.+
T Consensus 69 Ts~ySFLNYL~~h~RL---y~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~---- 140 (436)
T COG3486 69 TSPYSFLNYLHEHGRL---YEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTAN---- 140 (436)
T ss_pred CCchHHHHHHHHcchH---hhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCC----
Confidence 00111111 11000 112334567789999999998888877 7789999999774332222222 44443
Q ss_pred cCCCcccccccceEEEcCEEEEcCCCCCchhHHH
Q 006539 258 KDGSKKENFQRGVELRGRITLLAEGCRGSLSEKL 291 (641)
Q Consensus 258 ~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l 291 (641)
+..++|+.||++.|..+.+-.++
T Consensus 141 -----------~~~y~ar~lVlg~G~~P~IP~~f 163 (436)
T COG3486 141 -----------GTVYRARNLVLGVGTQPYIPPCF 163 (436)
T ss_pred -----------CcEEEeeeEEEccCCCcCCChHH
Confidence 56899999999999888766543
No 323
>PRK14694 putative mercuric reductase; Provisional
Probab=98.04 E-value=7e-05 Score=82.63 Aligned_cols=97 Identities=21% Similarity=0.232 Sum_probs=73.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.|+|||||+.|+.+|..|++. |.+|+|+++...+.. +
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~------g~~Vtlv~~~~~l~~-------------------~----------------- 216 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARL------GSRVTVLARSRVLSQ-------------------E----------------- 216 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEECCCCCCC-------------------C-----------------
Confidence 4799999999999999999998 999999986422110 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
...+.+.+.+.+++.||+++.++.++++..++ +.+ .+.+.+
T Consensus 217 -----------------------~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~-~~~-~v~~~~-------------- 257 (468)
T PRK14694 217 -----------------------DPAVGEAIEAAFRREGIEVLKQTQASEVDYNG-REF-ILETNA-------------- 257 (468)
T ss_pred -----------------------CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CEE-EEEECC--------------
Confidence 12345556777788999999999999987654 322 354433
Q ss_pred cceEEEcCEEEEcCCCCCch
Q 006539 268 RGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~v 287 (641)
.++.+|.||+|+|..+..
T Consensus 258 --~~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 258 --GTLRAEQLLVATGRTPNT 275 (468)
T ss_pred --CEEEeCEEEEccCCCCCc
Confidence 469999999999998864
No 324
>PLN02507 glutathione reductase
Probab=98.04 E-value=4.8e-05 Score=84.38 Aligned_cols=99 Identities=15% Similarity=0.191 Sum_probs=76.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-+|+|||||+.|+-+|..|++. |.+|+|+++.+.+-.. +
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~------G~~Vtli~~~~~~l~~------~----------------------------- 242 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGM------GATVDLFFRKELPLRG------F----------------------------- 242 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHc------CCeEEEEEecCCcCcc------c-----------------------------
Confidence 4799999999999999999998 9999999987642110 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
-..+.+.+.+.+++.||+++.++.|+++..++++ + .|.+.+
T Consensus 243 -----------------------d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~-~-~v~~~~-------------- 283 (499)
T PLN02507 243 -----------------------DDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGG-I-KVITDH-------------- 283 (499)
T ss_pred -----------------------CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCe-E-EEEECC--------------
Confidence 0244555666778889999999999999865533 3 455544
Q ss_pred cceEEEcCEEEEcCCCCCch
Q 006539 268 RGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~v 287 (641)
|.++.+|.||.|.|..+..
T Consensus 284 -g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 284 -GEEFVADVVLFATGRAPNT 302 (499)
T ss_pred -CcEEEcCEEEEeecCCCCC
Confidence 5689999999999988764
No 325
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=98.03 E-value=2e-06 Score=76.43 Aligned_cols=58 Identities=19% Similarity=0.295 Sum_probs=45.6
Q ss_pred CCCCcccccCCCCCC---ccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEEC
Q 006539 566 DPKIPELVNLPEYAG---PESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 629 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~---~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~ 629 (641)
+++.|..|. +. .|+.+||.+++.+.++ ....+.++.+.|++|+.|..+||++||++..
T Consensus 6 ~~~~C~gC~----~~~~~~Cv~~CP~~ai~~~~~--~~~~~~id~~~C~~Cg~Cv~~CP~~AI~~~~ 66 (132)
T TIGR02060 6 YPTKCDGCK----AGEKTACVYICPNDLMHLDTE--IMKAYNIEPDMCWECYSCVKACPQGAIDVRG 66 (132)
T ss_pred ccccccCcc----CCchhcCHhhcCccceEecCC--CceeeecCchhCccHHHHHHhCCcCceEEEC
Confidence 677888873 11 7999999999987542 1124578999999999999999999998553
No 326
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.03 E-value=5.6e-05 Score=82.41 Aligned_cols=107 Identities=17% Similarity=0.243 Sum_probs=78.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.|+|||||++|+.+|..|++. |.+|+++++.+.+... .
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~~~~-----------------~------------------ 176 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRER------GKNVTLIHRSERILNK-----------------L------------------ 176 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCcEEEEECCcccCcc-----------------c------------------
Confidence 4799999999999999999998 9999999987643110 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
. ...+.+.+.+.+++.||++++++.++++..+ +.+ +.+.+
T Consensus 177 ---------------------~-~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~~~--v~~~~-------------- 216 (427)
T TIGR03385 177 ---------------------F-DEEMNQIVEEELKKHEINLRLNEEVDSIEGE--ERV--KVFTS-------------- 216 (427)
T ss_pred ---------------------c-CHHHHHHHHHHHHHcCCEEEeCCEEEEEecC--CCE--EEEcC--------------
Confidence 0 0234455667778899999999999998654 333 34443
Q ss_pred cceEEEcCEEEEcCCCCCchhHHHHHHcCCC
Q 006539 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~ 298 (641)
|.++.+|.||.|+|.++.. .+++..++.
T Consensus 217 -g~~i~~D~vi~a~G~~p~~--~~l~~~gl~ 244 (427)
T TIGR03385 217 -GGVYQADMVILATGIKPNS--ELAKDSGLK 244 (427)
T ss_pred -CCEEEeCEEEECCCccCCH--HHHHhcCcc
Confidence 5689999999999998753 344444443
No 327
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.03 E-value=5.2e-05 Score=83.50 Aligned_cols=99 Identities=20% Similarity=0.225 Sum_probs=76.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.|+|||||..|+.+|..|++. |.+|+++|+.+.+....
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~------g~~Vtli~~~~~~l~~~----------------------------------- 216 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTEL------GVKVTLVSSRDRVLPGE----------------------------------- 216 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEEcCCcCCCCC-----------------------------------
Confidence 4699999999999999999998 99999999876432200
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
-..+...+.+.+++.||+++.++.++++..+++ .+ .|.+.+
T Consensus 217 -----------------------d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~-~~-~v~~~~-------------- 257 (466)
T PRK07845 217 -----------------------DADAAEVLEEVFARRGMTVLKRSRAESVERTGD-GV-VVTLTD-------------- 257 (466)
T ss_pred -----------------------CHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCC-EE-EEEECC--------------
Confidence 013344566777889999999999999976553 33 355544
Q ss_pred cceEEEcCEEEEcCCCCCch
Q 006539 268 RGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~v 287 (641)
|.++.+|.||.|+|..+..
T Consensus 258 -g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 258 -GRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred -CcEEEecEEEEeecCCcCC
Confidence 5689999999999988764
No 328
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=98.02 E-value=1.8e-06 Score=77.32 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=44.4
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEEC
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 629 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~ 629 (641)
|.+.|+.|. .|+.+||.+++...++ ..+.|+.+.|+.||.|..+||++||.+..
T Consensus 57 d~~~Ci~C~------~C~~~CP~~ai~~~~~----~~~~i~~~~C~~Cg~Cv~vCP~~a~~l~~ 110 (133)
T PRK09625 57 NNEICINCF------NCWVYCPDAAILSRDK----KLKGVDYSHCKGCGVCVEVCPTNPKSLLM 110 (133)
T ss_pred ehhHCcChh------hHHHhCCHhheEecCC----ceEEeCcCcCcChhHHHHHCCcCceEEEe
Confidence 778999886 7999999998875432 14678999999999999999999976544
No 329
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=98.02 E-value=3.9e-06 Score=71.94 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=46.2
Q ss_pred cCCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEE
Q 006539 565 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 628 (641)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~ 628 (641)
.+.+.|+.|. .|+.+||.+++.+.++ + .+.+|.+.|..||.|...||.+||++.
T Consensus 48 i~~~~Ci~C~------~C~~~CP~~ai~~~~~--~--~~~id~~~C~~Cg~Cv~~CP~~AI~~~ 101 (105)
T PRK09623 48 VDESKCVKCY------ICWKFCPEPAIYIKED--G--YVAIDYDYCKGCGICANECPTKAITMV 101 (105)
T ss_pred ECcccCcccc------chhhhCCHhheEecCC--C--cEEeCchhCcCcchhhhhcCcCcEEec
Confidence 3788999886 7999999999887533 2 478999999999999999999999875
No 330
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=98.01 E-value=2.3e-06 Score=51.87 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=21.3
Q ss_pred EEEecCCCccCCCccccCCCCCee
Q 006539 603 LQINAQNCLHCKACDIKDPKQNIK 626 (641)
Q Consensus 603 ~~~~~~~C~~C~~C~~~cp~~~i~ 626 (641)
+++|++.|++||.|..+||++||+
T Consensus 1 ~~id~~~C~~Cg~C~~~CP~~ai~ 24 (24)
T PF00037_consen 1 PVIDPDKCIGCGRCVEACPFDAIT 24 (24)
T ss_dssp EEEETTTSSS-THHHHHSTTSSEE
T ss_pred CEEchHHCCCcchhhhhcccccCC
Confidence 468999999999999999999996
No 331
>PRK14727 putative mercuric reductase; Provisional
Probab=98.01 E-value=8.2e-05 Score=82.27 Aligned_cols=97 Identities=19% Similarity=0.165 Sum_probs=73.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.|+|||||+.|+.+|..|++. |.+|+|+++...+.. +
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~------G~~Vtlv~~~~~l~~-------------------~----------------- 226 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARL------GSRVTILARSTLLFR-------------------E----------------- 226 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCEEEEEEcCCCCCc-------------------c-----------------
Confidence 4699999999999999999998 999999986421110 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
-..+.+.+.+.+++.||++++++.++++..+++ .+ .|.+.+
T Consensus 227 -----------------------d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~-~~-~v~~~~-------------- 267 (479)
T PRK14727 227 -----------------------DPLLGETLTACFEKEGIEVLNNTQASLVEHDDN-GF-VLTTGH-------------- 267 (479)
T ss_pred -----------------------hHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCC-EE-EEEEcC--------------
Confidence 013445567777889999999999999976553 22 344433
Q ss_pred cceEEEcCEEEEcCCCCCch
Q 006539 268 RGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~v 287 (641)
.++.+|.||+|.|.++.+
T Consensus 268 --g~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 268 --GELRAEKLLISTGRHANT 285 (479)
T ss_pred --CeEEeCEEEEccCCCCCc
Confidence 368899999999999864
No 332
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.00 E-value=5.1e-05 Score=83.70 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=75.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.|+|||||+.|+.+|..++... ..|.+|+|+|+.+.+... +
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~---~~G~~Vtli~~~~~il~~------------------~----------------- 229 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYK---PRGGKVTLCYRNNMILRG------------------F----------------- 229 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhc---cCCCeEEEEecCCccccc------------------c-----------------
Confidence 46999999999999997665320 118999999987754210 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
-..+.+.+.+.+++.||+++.++.++++..++++. ..|.+.+
T Consensus 230 -----------------------d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~-~~v~~~~-------------- 271 (486)
T TIGR01423 230 -----------------------DSTLRKELTKQLRANGINIMTNENPAKVTLNADGS-KHVTFES-------------- 271 (486)
T ss_pred -----------------------CHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCce-EEEEEcC--------------
Confidence 02445566777788999999999999998665443 3466544
Q ss_pred cceEEEcCEEEEcCCCCCch
Q 006539 268 RGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~v 287 (641)
|.++.+|.||.|+|..+..
T Consensus 272 -g~~i~~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 272 -GKTLDVDVVMMAIGRVPRT 290 (486)
T ss_pred -CCEEEcCEEEEeeCCCcCc
Confidence 4689999999999988764
No 333
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=98.00 E-value=3.6e-06 Score=82.66 Aligned_cols=57 Identities=14% Similarity=0.185 Sum_probs=46.9
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEEC
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 629 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~ 629 (641)
++..|..|. ..+|+.+||.+++...++ .+ .+.+|.+.|++||.|..+||++||.|..
T Consensus 90 ~~~~C~~C~----~~~Cv~~CP~gAi~~~~~-~g--~v~id~~~C~~C~~C~~aCP~~A~~~~~ 146 (225)
T TIGR03149 90 FRKSCQHCD----NAPCVAVCPTGASFKDEE-TG--IVDVHKDLCVGCQYCIAACPYRVRFIHP 146 (225)
T ss_pred CchhccCCc----CcChHhhCCCCcEEEeCC-CC--eEEechhhCCcchHHHHhCCCCCcEecC
Confidence 567788876 568999999999886432 23 5789999999999999999999998763
No 334
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.99 E-value=4e-05 Score=81.19 Aligned_cols=158 Identities=20% Similarity=0.262 Sum_probs=81.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccE-
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF- 186 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~- 186 (641)
++|+|||||++|+.+|.+|.+.... ...|.|+|+....|...-...--+...++ .+ .....+........+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~---~~~Isi~e~~~~~G~GiaYs~~~p~~~lN--v~---a~~mS~~~pD~p~~F~ 73 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRP---SGLISIFEPRPNFGQGIAYSTEEPEHLLN--VP---AARMSAFAPDIPQDFV 73 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCC---CCceEEeccccccCCCccCCCCCchhhhc--cc---cccccccCCCCchHHH
Confidence 6899999999999999999987322 22399999999887643222111111110 00 000000000000111
Q ss_pred EEeecC-ccccCCCCCCCCCcEEeeHHHHHHHHHHHHHH---cC----CEEecCceEEEEEEcCCCcEEEEEeCcccccc
Q 006539 187 WFLTKD-RAFSLPSPFSNRGNYVISLSQLVRWLGGKAEE---LG----VEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (641)
Q Consensus 187 ~~~~~~-~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~---~G----v~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~ 258 (641)
.|+... .....+......+.....|..+-++|.++... .+ +..+ .+.++++..++++....|.+.+
T Consensus 74 ~WL~~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~-~~~a~~~~~~~n~~~~~~~~~~----- 147 (474)
T COG4529 74 RWLQKQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTI-REEATSVRQDTNAGGYLVTTAD----- 147 (474)
T ss_pred HHHHhcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEE-eeeeecceeccCCceEEEecCC-----
Confidence 111111 00011111222233345566666666665433 22 3333 4455666665445454566665
Q ss_pred CCCcccccccceEEEcCEEEEcCCCCCchhH
Q 006539 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSE 289 (641)
Q Consensus 259 ~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~ 289 (641)
|....||.+|+|||.-.....
T Consensus 148 ----------g~~~~ad~~Vlatgh~~~~~~ 168 (474)
T COG4529 148 ----------GPSEIADIIVLATGHSAPPAD 168 (474)
T ss_pred ----------CCeeeeeEEEEeccCCCCCcc
Confidence 678899999999997654333
No 335
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=1.1e-05 Score=84.07 Aligned_cols=138 Identities=22% Similarity=0.271 Sum_probs=79.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCC-CCCCccc--cccccChHH-------HHHhhhhhhhcCC
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA-EVGAHII--SGNVFEPRA-------LNELLPQWKQEEA 175 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~-~~g~~~~--~g~~i~~~~-------l~~l~~~~~~~~~ 175 (641)
..|||||||||-||..||.+++|. |.+.+++-.+- .+|.... +-|.+.... |+-+.....+.
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~------Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~-- 98 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARL------GARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQ-- 98 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhc------CCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhh--
Confidence 479999999999999999999999 99999988764 2333221 112222222 11111111100
Q ss_pred CeeeeccCccEEEeecCccccCCCCCCCCC-cEEeeHHHHHHHHHHH-----HHH-cCCEEecCceEEEEEEcCCC----
Q 006539 176 PIRVPVSSDKFWFLTKDRAFSLPSPFSNRG-NYVISLSQLVRWLGGK-----AEE-LGVEIYPGFAASEILYDADN---- 244 (641)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~l~~~L~~~-----a~~-~Gv~i~~g~~v~~i~~~~~g---- 244 (641)
..-.+..+. +..| ...-.|.++.+.|++. +.. .+.+|..+. |+++...+++
T Consensus 99 ------s~vq~k~LN-----------rs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~-V~dliv~~~~~~~~ 160 (679)
T KOG2311|consen 99 ------SGVQYKVLN-----------RSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGA-VADLIVEDPDDGHC 160 (679)
T ss_pred ------hhhhHHHhh-----------ccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhhh-hhheeeccCCCCce
Confidence 000001111 0111 1122345555555443 322 256777664 6676654433
Q ss_pred cEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCC
Q 006539 245 KVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (641)
Q Consensus 245 ~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~ 284 (641)
++.||.+.+ |+.+.|+.||+.||..
T Consensus 161 ~~~gV~l~d---------------gt~v~a~~VilTTGTF 185 (679)
T KOG2311|consen 161 VVSGVVLVD---------------GTVVYAESVILTTGTF 185 (679)
T ss_pred EEEEEEEec---------------CcEeccceEEEeeccc
Confidence 377888877 8999999999999964
No 336
>PRK13984 putative oxidoreductase; Provisional
Probab=97.99 E-value=1.4e-05 Score=90.94 Aligned_cols=39 Identities=44% Similarity=0.551 Sum_probs=35.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCC
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~ 150 (641)
...+|+|||+|+||+++|..|++. |++|+|+|+.+.+|+
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~------G~~v~vie~~~~~gG 320 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATM------GYEVTVYESLSKPGG 320 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCc
Confidence 356899999999999999999999 999999999987765
No 337
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.98 E-value=1.2e-05 Score=92.78 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=34.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCC
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVG 149 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g 149 (641)
...+|+|||||||||++|+.|++. |++|+|+|+....|
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~------Gh~Vtv~E~~~i~g 419 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRS------GHNVTAIDGLKITL 419 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC------CCeEEEEccccccc
Confidence 456899999999999999999998 99999999876544
No 338
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=97.98 E-value=7.5e-06 Score=76.48 Aligned_cols=55 Identities=20% Similarity=0.329 Sum_probs=43.4
Q ss_pred CCCcccccCCCCCCccccccCCeeEEEecCC--CCc---eeEEEecCCCccCCCccccCCCCCeeE
Q 006539 567 PKIPELVNLPEYAGPESRYCPARVYEYVPDE--KNQ---LKLQINAQNCLHCKACDIKDPKQNIKW 627 (641)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~--~~~---~~~~~~~~~C~~C~~C~~~cp~~~i~w 627 (641)
.+.|+.|. .|+.+||.+++.+.... ++. ..+.+|...|+.||.|..+||++||+.
T Consensus 57 ~~~Ci~C~------~C~~~CP~~ai~~~~~~~~~g~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~ 116 (164)
T PRK05888 57 EERCIACK------LCAAICPADAITIEAAEREDGRRRTTRYDINFGRCIFCGFCEEACPTDAIVE 116 (164)
T ss_pred CccCCccc------ChHHHcCccccccccccCCCCcccceeeecCCCcCcccCcchhhcCcCccee
Confidence 45898886 79999999988765421 121 136789999999999999999999974
No 339
>PRK06273 ferredoxin; Provisional
Probab=97.97 E-value=2.8e-06 Score=78.63 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=44.9
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCC-----C---ceeEEEecCCCccCCCccccCCCCCeeE
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEK-----N---QLKLQINAQNCLHCKACDIKDPKQNIKW 627 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~-----~---~~~~~~~~~~C~~C~~C~~~cp~~~i~w 627 (641)
+.+.|..|. .|..+||.+++.+...+. + ...+.+|.+.|+.||.|..+||++||..
T Consensus 47 d~~~CigCg------~C~~aCP~~AI~~~~~ep~~~~~~~~~~~~~~Id~~kCi~Cg~C~~aCP~~AI~~ 110 (165)
T PRK06273 47 FEELCIGCG------GCANVCPTKAIEMIPVEPVKITEGYVKTKIPKIDYEKCVYCLYCHDFCPVFALFN 110 (165)
T ss_pred CchhCcChh------HHHHhcCccceeeecccccchhcccccccceecccccCcCCCCcchhCCHhheec
Confidence 667899886 799999999998764211 0 1236899999999999999999999954
No 340
>PRK02651 photosystem I subunit VII; Provisional
Probab=97.97 E-value=3.4e-06 Score=68.83 Aligned_cols=58 Identities=24% Similarity=0.375 Sum_probs=44.2
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCC---CceeEEEecCCCccCCCccccCCCCCeeEEC
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEK---NQLKLQINAQNCLHCKACDIKDPKQNIKWTV 629 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~---~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~ 629 (641)
..+.|+.|. .|+.+||.+++.+.+.+. +.....++++.|+.||.|..+||+++|++++
T Consensus 7 ~~~~Ci~C~------~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 67 (81)
T PRK02651 7 IYDTCIGCT------QCVRACPLDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRV 67 (81)
T ss_pred ccccCCCcc------hHHHHCCccceecccccccccCcccccCCCCcCCChhhhhhhcCCCceEEEE
Confidence 457898886 699999999888653211 1112356789999999999999999999655
No 341
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.97 E-value=5e-06 Score=86.34 Aligned_cols=63 Identities=25% Similarity=0.403 Sum_probs=47.0
Q ss_pred cEEecCCCCcc--cccCCCCCCccccccCC-----eeEEEecCCCCceeEEEecCCCccCCCccccCCCCCee-EECCC
Q 006539 561 HLRLRDPKIPE--LVNLPEYAGPESRYCPA-----RVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK-WTVPE 631 (641)
Q Consensus 561 hl~~~~~~~~~--~~~~~~~~~~~~~~CP~-----~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~-w~~p~ 631 (641)
||-+.|-+.|. .|+ .-|.++||. .|+++.++ .+ +-.|..+-|++||.|..+||++||+ -+-|+
T Consensus 4 riAvvd~D~C~PkkC~-----~eC~~yCP~vrtg~~~I~i~~~-~g--kpvIsE~lCiGCGICvkkCPF~AI~IvnLP~ 74 (591)
T COG1245 4 RIAVVDYDRCQPKKCG-----YECIKYCPVVRTGKETIEIDED-TG--KPVISEELCIGCGICVKKCPFDAISIVNLPE 74 (591)
T ss_pred eEEEeehhccCccccc-----hhhhhcCCCccCCCeeEEecCC-CC--CceeEhhhhccchhhhccCCcceEEEecCch
Confidence 45555656554 343 468999996 48888654 33 4589999999999999999999997 45554
No 342
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.96 E-value=7.3e-05 Score=82.62 Aligned_cols=103 Identities=20% Similarity=0.229 Sum_probs=76.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... .
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------~----------------------------- 222 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRL------GAEVTILEALPAFLAA------A----------------------------- 222 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEeCCCccCCc------C-----------------------------
Confidence 4799999999999999999998 9999999987643210 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
-..+.+.+.+.+++.||+++.++.|+++..+++ .+ .|.+.+ .+|+
T Consensus 223 -----------------------d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~-~v-~v~~~~----~~g~------ 267 (475)
T PRK06327 223 -----------------------DEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGK-GV-SVAYTD----ADGE------ 267 (475)
T ss_pred -----------------------CHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCC-EE-EEEEEe----CCCc------
Confidence 023445566677788999999999999986653 33 355433 1122
Q ss_pred cceEEEcCEEEEcCCCCCch
Q 006539 268 RGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~v 287 (641)
..++.+|.||+|+|..+..
T Consensus 268 -~~~i~~D~vl~a~G~~p~~ 286 (475)
T PRK06327 268 -AQTLEVDKLIVSIGRVPNT 286 (475)
T ss_pred -eeEEEcCEEEEccCCccCC
Confidence 1578999999999988764
No 343
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.96 E-value=7.8e-05 Score=81.65 Aligned_cols=98 Identities=17% Similarity=0.183 Sum_probs=75.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.|+|||||+.|+..|..|++. |.+|+|+|+.+.+... +
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------------------~----------------- 197 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANF------GSKVTILEAASLFLPR------------------E----------------- 197 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCCC------------------c-----------------
Confidence 3799999999999999999998 9999999987643210 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
-..+.+.+.+.+++.||+++.++.++++..++ +.+ .|.+.+
T Consensus 198 -----------------------~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~-~~v-~v~~~~-------------- 238 (441)
T PRK08010 198 -----------------------DRDIADNIATILRDQGVDIILNAHVERISHHE-NQV-QVHSEH-------------- 238 (441)
T ss_pred -----------------------CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CEE-EEEEcC--------------
Confidence 01344556777788999999999999998664 333 344433
Q ss_pred cceEEEcCEEEEcCCCCCch
Q 006539 268 RGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~v 287 (641)
.++.+|.||+|.|.++..
T Consensus 239 --g~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 239 --AQLAVDALLIASGRQPAT 256 (441)
T ss_pred --CeEEeCEEEEeecCCcCC
Confidence 358899999999998864
No 344
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.96 E-value=5.7e-05 Score=79.51 Aligned_cols=102 Identities=25% Similarity=0.287 Sum_probs=84.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccE
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (641)
.-.|++||+|..|+.+|..|.-. +++|++|++.+.+-. .++
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~------~~~VT~V~~e~~~~~--------------~lf------------------- 253 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSK------AKSVTVVFPEPWLLP--------------RLF------------------- 253 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhc------CceEEEEccCccchh--------------hhh-------------------
Confidence 45699999999999999999988 999999998764311 000
Q ss_pred EEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccccc
Q 006539 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (641)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~ 266 (641)
...+.+.+.+..++.||+++.++.+.+++.+++|++..|.+.+
T Consensus 254 ------------------------~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d------------- 296 (478)
T KOG1336|consen 254 ------------------------GPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD------------- 296 (478)
T ss_pred ------------------------hHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEecc-------------
Confidence 1244555666778899999999999999999989999999987
Q ss_pred ccceEEEcCEEEEcCCCCCc
Q 006539 267 QRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (641)
|.++.||+||...|+.+.
T Consensus 297 --g~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 297 --GKTLEADLVVVGIGIKPN 314 (478)
T ss_pred --CCEeccCeEEEeeccccc
Confidence 789999999999999876
No 345
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.95 E-value=5.4e-05 Score=82.71 Aligned_cols=95 Identities=12% Similarity=0.079 Sum_probs=73.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-+|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... +
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~------g~~Vtli~~~~~l~~~------------------~----------------- 187 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYER------GLHPTLIHRSDKINKL------------------M----------------- 187 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEecccccchh------------------c-----------------
Confidence 4799999999999999999998 9999999987643210 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
..++.+.+.+.+++.||+++.+++++++.. . .|++.+
T Consensus 188 -----------------------d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~---~v~~~~-------------- 224 (438)
T PRK13512 188 -----------------------DADMNQPILDELDKREIPYRLNEEIDAING---N---EVTFKS-------------- 224 (438)
T ss_pred -----------------------CHHHHHHHHHHHHhcCCEEEECCeEEEEeC---C---EEEECC--------------
Confidence 013445566777889999999999998852 1 355544
Q ss_pred cceEEEcCEEEEcCCCCCch
Q 006539 268 RGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~v 287 (641)
|.++.+|.||.|+|..+..
T Consensus 225 -g~~~~~D~vl~a~G~~pn~ 243 (438)
T PRK13512 225 -GKVEHYDMIIEGVGTHPNS 243 (438)
T ss_pred -CCEEEeCEEEECcCCCcCh
Confidence 5678999999999998863
No 346
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.94 E-value=9.2e-06 Score=85.93 Aligned_cols=40 Identities=43% Similarity=0.604 Sum_probs=36.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccc
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~ 153 (641)
+||+|||||++|+++|..|++. |.+|+|+|++..+|+.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~------G~~V~viEk~~~iGG~~~ 41 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL------NKRVLVVEKRNHIGGNCY 41 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCeEEEEecCCCCCCcee
Confidence 6999999999999999999998 999999999988887653
No 347
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=97.93 E-value=6.1e-06 Score=77.03 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=47.3
Q ss_pred EEecCCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEE
Q 006539 562 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 628 (641)
Q Consensus 562 l~~~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~ 628 (641)
....|++.|..|. .|+++||.+++...++ + ...++.+.|+.||.|..+||++||++.
T Consensus 107 ~~~id~~~Ci~Cg------~C~~aCp~~ai~~~~~--~--~~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 163 (165)
T TIGR01944 107 VALIDEDNCIGCT------KCIQACPVDAIVGAAK--A--MHTVIADECTGCDLCVEPCPTDCIEMI 163 (165)
T ss_pred eEEEECCcCCChh------HHHHhCCccceEecCC--C--ceEeecccccChhHHHHhcCcCceEee
Confidence 3345788999886 7999999999886432 1 457889999999999999999999987
No 348
>PRK07846 mycothione reductase; Reviewed
Probab=97.93 E-value=9.1e-05 Score=81.18 Aligned_cols=98 Identities=19% Similarity=0.247 Sum_probs=72.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-+|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... ++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~------G~~Vtli~~~~~ll~~------~d---------------------------- 206 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSAL------GVRVTVVNRSGRLLRH------LD---------------------------- 206 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEEcCCccccc------cC----------------------------
Confidence 4799999999999999999998 9999999987643210 00
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
.++.+.+.+ ..+.|++++.+++++++..++ +.+ .|.+.+
T Consensus 207 ------------------------~~~~~~l~~-l~~~~v~i~~~~~v~~i~~~~-~~v-~v~~~~-------------- 245 (451)
T PRK07846 207 ------------------------DDISERFTE-LASKRWDVRLGRNVVGVSQDG-SGV-TLRLDD-------------- 245 (451)
T ss_pred ------------------------HHHHHHHHH-HHhcCeEEEeCCEEEEEEEcC-CEE-EEEECC--------------
Confidence 122233333 234679999999999997654 333 455544
Q ss_pred cceEEEcCEEEEcCCCCCch
Q 006539 268 RGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~v 287 (641)
|.++.+|.||.|+|..+..
T Consensus 246 -g~~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 246 -GSTVEADVLLVATGRVPNG 264 (451)
T ss_pred -CcEeecCEEEEEECCccCc
Confidence 5689999999999988763
No 349
>PLN02546 glutathione reductase
Probab=97.92 E-value=8.1e-05 Score=83.25 Aligned_cols=100 Identities=20% Similarity=0.213 Sum_probs=75.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-+|+|||||+.|+..|..|++. |.+|+|+|+.+.+... +
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~------g~~Vtlv~~~~~il~~------------------~----------------- 291 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGL------KSDVHVFIRQKKVLRG------------------F----------------- 291 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCeEEEEEeccccccc------------------c-----------------
Confidence 4799999999999999999998 9999999987643210 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
-..+.+.+.+.+++.||+++.++.++++..++++.+ .|.+.+
T Consensus 292 -----------------------d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~-------------- 333 (558)
T PLN02546 292 -----------------------DEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNK-------------- 333 (558)
T ss_pred -----------------------CHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECC--------------
Confidence 024445566777889999999999999976554543 454433
Q ss_pred cceEEEcCEEEEcCCCCCch
Q 006539 268 RGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~v 287 (641)
+....+|.||.|.|..+..
T Consensus 334 -g~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 334 -GTVEGFSHVMFATGRKPNT 352 (558)
T ss_pred -eEEEecCEEEEeeccccCC
Confidence 3444589999999998864
No 350
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=97.92 E-value=4.8e-06 Score=78.88 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=43.4
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEec--CC----CCceeEEEecCCCccCCCccccCCCCCeeEE
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVP--DE----KNQLKLQINAQNCLHCKACDIKDPKQNIKWT 628 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~--~~----~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~ 628 (641)
+.+.|+.|. .|+.+||.+++.+.. +. .....+.+|.+.|+.||.|..+||++||+++
T Consensus 60 ~~~kCi~Cg------~C~~aCP~~ai~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~aCP~~AI~~~ 122 (183)
T TIGR00403 60 EFDKCIACE------VCVRVCPINLPVVDWEFNKAIKKKQLKNYSIDFGVCIFCGNCVEYCPTNCLSMT 122 (183)
T ss_pred CcccCcCcC------ChhhhCCCCcccccccccccccccccceeecCcccccCcCchhhhcCCCCeecc
Confidence 567899886 799999999753211 00 0112477999999999999999999999874
No 351
>PLN02785 Protein HOTHEAD
Probab=97.91 E-value=0.00021 Score=80.40 Aligned_cols=67 Identities=15% Similarity=0.290 Sum_probs=45.6
Q ss_pred HHHHHHcCCEEecCceEEEEEEcCC---CcEEEEEeCccccccCCCcccccccceEE-----EcCEEEEcCCCCCchhHH
Q 006539 219 GGKAEELGVEIYPGFAASEILYDAD---NKVIGIGTNDMGIAKDGSKKENFQRGVEL-----RGRITLLAEGCRGSLSEK 290 (641)
Q Consensus 219 ~~~a~~~Gv~i~~g~~v~~i~~~~~---g~v~~V~~~~~g~~~~g~~~~~~~~g~~i-----~a~~vV~A~G~~s~vr~~ 290 (641)
...+...+++|+.++.|++|.++++ ++++||.+.+ .+|.. .++ .++-||+|.|+-.+ -+
T Consensus 227 ~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~----~~g~~-------~~~~~~~~~~~eVILsAGai~s--P~ 293 (587)
T PLN02785 227 LAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKD----ENGNQ-------HQAFLSNNKGSEIILSAGAIGS--PQ 293 (587)
T ss_pred HhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEE----CCCce-------EEEEeecccCceEEecccccCC--HH
Confidence 3444556799999999999999763 2688998865 22321 122 24789999998763 55
Q ss_pred HHHHcCCC
Q 006539 291 LIKNFKLR 298 (641)
Q Consensus 291 l~~~~~~~ 298 (641)
|+...|+-
T Consensus 294 lL~~SGIG 301 (587)
T PLN02785 294 MLLLSGIG 301 (587)
T ss_pred HHHHcCCC
Confidence 55555655
No 352
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.91 E-value=0.00014 Score=82.68 Aligned_cols=115 Identities=17% Similarity=0.123 Sum_probs=74.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.|+|||||+.|+..|..|++. |.+|+|+|+.+.+... +
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~------G~eVTLIe~~~~ll~~------~----------------------------- 351 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTAL------GSEVVSFEYSPQLLPL------L----------------------------- 351 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhC------CCeEEEEeccCccccc------C-----------------------------
Confidence 4799999999999999999998 9999999988754220 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHH-HHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKA-EELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a-~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~ 266 (641)
-.++.+.+.+.. ++.||+|+.++.|+++..++++..+.|.+.+....+++.....+
T Consensus 352 -----------------------d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~ 408 (659)
T PTZ00153 352 -----------------------DADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNM 408 (659)
T ss_pred -----------------------CHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEecccccccccccccc
Confidence 013344444443 46899999999999998665433223443320000000000001
Q ss_pred ccceEEEcCEEEEcCCCCCc
Q 006539 267 QRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (641)
....++.+|.||.|+|..+.
T Consensus 409 ~~~~~i~aD~VlvAtGr~Pn 428 (659)
T PTZ00153 409 NDIKETYVDSCLVATGRKPN 428 (659)
T ss_pred ccceEEEcCEEEEEECcccC
Confidence 11247999999999997765
No 353
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.90 E-value=1.1e-05 Score=88.60 Aligned_cols=39 Identities=36% Similarity=0.593 Sum_probs=35.9
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCC--CcEEEEcCCCCCCCccc
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVD--LSVCVVEKGAEVGAHII 153 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G--~~V~viEk~~~~g~~~~ 153 (641)
+|+|||||+|||+||+.|++. | ++|+|+|+++.+||.+.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~------G~~~~V~vlEa~~~~GGr~~ 42 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKK------GPDADITLLEASDRLGGKIQ 42 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHh------CCCCCEEEEEcCCCCcceEE
Confidence 599999999999999999998 7 89999999999998653
No 354
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.90 E-value=3.9e-05 Score=81.07 Aligned_cols=109 Identities=26% Similarity=0.246 Sum_probs=72.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccE
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (641)
...|||||||.+|+.+|..|.+.. ++.+|++||++...--.. ++....
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~----~~~~itLVd~~~~hl~~p-------------lL~eva--------------- 50 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL----PDVEITLVDRRDYHLFTP-------------LLYEVA--------------- 50 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC----CCCcEEEEeCCCccccch-------------hhhhhh---------------
Confidence 356999999999999999999972 158999999987532110 010000
Q ss_pred EEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcC-CEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccc
Q 006539 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (641)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~ 265 (641)
...++...+..-+.+.+.+.+ |+++.+ +|++|..++. .|.+.+
T Consensus 51 -------------------~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~~ID~~~k----~V~~~~------------ 94 (405)
T COG1252 51 -------------------TGTLSESEIAIPLRALLRKSGNVQFVQG-EVTDIDRDAK----KVTLAD------------ 94 (405)
T ss_pred -------------------cCCCChhheeccHHHHhcccCceEEEEE-EEEEEcccCC----EEEeCC------------
Confidence 111222233333445455444 888876 4888887762 366665
Q ss_pred cccceEEEcCEEEEcCCCCCc
Q 006539 266 FQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 266 ~~~g~~i~a~~vV~A~G~~s~ 286 (641)
+..+.+|.+|+|.|+...
T Consensus 95 ---~~~i~YD~LVvalGs~~~ 112 (405)
T COG1252 95 ---LGEISYDYLVVALGSETN 112 (405)
T ss_pred ---CccccccEEEEecCCcCC
Confidence 468999999999998764
No 355
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.89 E-value=1.1e-05 Score=89.56 Aligned_cols=63 Identities=10% Similarity=0.052 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCC
Q 006539 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (641)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~ 284 (641)
-..|.+.|.+.+++.|++|++++.|++|..++ +++.+|.+.+. .+|+ ++++.||.||.+...+
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~~---~~~~-------~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTKG-GRAGWVVVVDS---RKQE-------DLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEeC-CeEEEEEEecC---CCCc-------eEEEECCEEEECCCHH
Confidence 46788889999999999999999999998876 45556766541 0111 2578999999998864
No 356
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.88 E-value=0.0002 Score=80.72 Aligned_cols=67 Identities=21% Similarity=0.288 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCch
Q 006539 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~v 287 (641)
...+...|.+.+.+.||+|+.++.++++..+++|+|+||...+ .++|+. ..+.|+.||+|||..+.+
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAIC---IETGET-------VYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEE---cCCCcE-------EEEecCeEEECCCCcccc
Confidence 4678889999998899999999999999987668999998643 123432 578999999999999853
No 357
>PLN02268 probable polyamine oxidase
Probab=97.88 E-value=1.2e-05 Score=87.85 Aligned_cols=39 Identities=28% Similarity=0.572 Sum_probs=36.7
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccc
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~ 153 (641)
+|+|||||++||+||+.|.+. |++|+|+|+++.+||.+.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~------g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA------SFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCCCCCceee
Confidence 699999999999999999998 999999999999998763
No 358
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=97.87 E-value=7.8e-06 Score=72.46 Aligned_cols=56 Identities=27% Similarity=0.390 Sum_probs=43.1
Q ss_pred CCCcccccCCCCCCccccccCCeeEEEecCC--CCc---eeEEEecCCCccCCCccccCCCCCeeEE
Q 006539 567 PKIPELVNLPEYAGPESRYCPARVYEYVPDE--KNQ---LKLQINAQNCLHCKACDIKDPKQNIKWT 628 (641)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~--~~~---~~~~~~~~~C~~C~~C~~~cp~~~i~w~ 628 (641)
.+.|..|. .|+.+||.+++.+.... ++. ..+.++.+.|+.||.|..+||+++|+++
T Consensus 42 ~~~Ci~C~------~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~al~~~ 102 (122)
T TIGR01971 42 EEKCIGCT------LCAAVCPADAIRVVPAEGEDGKRRLKFYQINFGRCIFCGLCEEACPTDAIVLT 102 (122)
T ss_pred cCcCcCcc------hhhhhcCHhHeeeeeeccCCCceecccceECcccCCCCCchhhhCCCcccccc
Confidence 37788886 79999999888765321 111 1367899999999999999999999754
No 359
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.87 E-value=1.9e-06 Score=52.00 Aligned_cols=23 Identities=26% Similarity=0.642 Sum_probs=21.6
Q ss_pred EEEecCCCccCCCccccCCCCCe
Q 006539 603 LQINAQNCLHCKACDIKDPKQNI 625 (641)
Q Consensus 603 ~~~~~~~C~~C~~C~~~cp~~~i 625 (641)
++||.+.|++||.|..+||.+||
T Consensus 2 ~~id~~~C~~Cg~C~~~Cp~~ai 24 (24)
T PF12837_consen 2 VVIDPDKCIGCGDCVRVCPEGAI 24 (24)
T ss_pred cEEChhhCcChhHHHHhcchhcC
Confidence 57999999999999999999987
No 360
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.87 E-value=8.2e-05 Score=80.93 Aligned_cols=99 Identities=26% Similarity=0.404 Sum_probs=71.9
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhc--------CCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeee
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREK--------NVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVP 180 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~--------~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~ 180 (641)
.|+|||||+.|+.+|..|+...... .++.+|+|+|+.+.+... +
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~------------------~---------- 226 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS------------------F---------- 226 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc------------------C----------
Confidence 7999999999999999988632110 137899999987643210 0
Q ss_pred ccCccEEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCC
Q 006539 181 VSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (641)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g 260 (641)
...+.+.+.+.+++.||+++.++.|+++.. + .|.+.+
T Consensus 227 ------------------------------~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~---~---~v~~~~------- 263 (424)
T PTZ00318 227 ------------------------------DQALRKYGQRRLRRLGVDIRTKTAVKEVLD---K---EVVLKD------- 263 (424)
T ss_pred ------------------------------CHHHHHHHHHHHHHCCCEEEeCCeEEEEeC---C---EEEECC-------
Confidence 013455567777889999999999988752 2 355555
Q ss_pred CcccccccceEEEcCEEEEcCCCCCc
Q 006539 261 SKKENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 261 ~~~~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
|.++.+|.+|.|.|..+.
T Consensus 264 --------g~~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 264 --------GEVIPTGLVVWSTGVGPG 281 (424)
T ss_pred --------CCEEEccEEEEccCCCCc
Confidence 678999999999997663
No 361
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.87 E-value=0.00014 Score=80.73 Aligned_cols=97 Identities=23% Similarity=0.195 Sum_probs=73.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-+|+|||||+.|+.+|..|++. |.+|+|+++...+.. +
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~------G~~Vtli~~~~~l~~-------------------~----------------- 220 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNEL------GFDVTVAVRSIPLRG-------------------F----------------- 220 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCcEEEEEcCccccc-------------------C-----------------
Confidence 3799999999999999999999 999999986421110 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
-..+.+.+.+.+++.||+++.++.+.++...+ +.+ .|.+.+
T Consensus 221 -----------------------d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~~-~v~~~~-------------- 261 (499)
T PTZ00052 221 -----------------------DRQCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DKI-KVLFSD-------------- 261 (499)
T ss_pred -----------------------CHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-CeE-EEEECC--------------
Confidence 01344556677788999999999998887654 323 455544
Q ss_pred cceEEEcCEEEEcCCCCCc
Q 006539 268 RGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (641)
|.++.+|.||.|.|..+.
T Consensus 262 -g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 262 -GTTELFDTVLYATGRKPD 279 (499)
T ss_pred -CCEEEcCEEEEeeCCCCC
Confidence 567899999999997765
No 362
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=97.87 E-value=5.3e-06 Score=82.28 Aligned_cols=57 Identities=14% Similarity=0.259 Sum_probs=47.0
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEECC
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 630 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~p 630 (641)
.+..|..|. .-+|+.+||.+++...+ ++ .+.+|.+.|++|+.|..+||++||.+...
T Consensus 96 ~~~~C~~C~----~p~Cv~~CP~~Ai~~~~--~G--~v~id~~~CigC~~Cv~aCP~~Ai~~~~~ 152 (244)
T PRK14993 96 LPRLCNHCD----NPPCVPVCPVQATFQRE--DG--IVVVDNKRCVGCAYCVQACPYDARFINHE 152 (244)
T ss_pred cchhcCCcC----CccCccccCCCCEEECC--CC--CEEEcHHHCCCHHHHHHhcCCCCCEEeCC
Confidence 356788876 55799999999987643 23 58899999999999999999999998753
No 363
>PRK13748 putative mercuric reductase; Provisional
Probab=97.85 E-value=0.00014 Score=82.20 Aligned_cols=97 Identities=16% Similarity=0.144 Sum_probs=73.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.|+|||||+.|+.+|..|++. |.+|+|+++...+.. +
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~------g~~Vtli~~~~~l~~-------------------~----------------- 308 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARL------GSKVTILARSTLFFR-------------------E----------------- 308 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCEEEEEecCccccc-------------------c-----------------
Confidence 4799999999999999999998 999999997432110 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
-..+.+.+.+.+++.||+++.++.++++..++ +.+ .+.+.+
T Consensus 309 -----------------------d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~-~~~-~v~~~~-------------- 349 (561)
T PRK13748 309 -----------------------DPAIGEAVTAAFRAEGIEVLEHTQASQVAHVD-GEF-VLTTGH-------------- 349 (561)
T ss_pred -----------------------CHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEE-EEEecC--------------
Confidence 01344556677788999999999999997654 333 344433
Q ss_pred cceEEEcCEEEEcCCCCCch
Q 006539 268 RGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~v 287 (641)
.++.+|.||.|.|..+..
T Consensus 350 --~~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 350 --GELRADKLLVATGRAPNT 367 (561)
T ss_pred --CeEEeCEEEEccCCCcCC
Confidence 368999999999998864
No 364
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=97.85 E-value=8.6e-06 Score=77.51 Aligned_cols=53 Identities=15% Similarity=0.387 Sum_probs=44.6
Q ss_pred CCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEE
Q 006539 567 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 628 (641)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~ 628 (641)
+..|..|. +.+|+.+||.+++...++ .+.+|++.|++|+.|..+||+++|.+.
T Consensus 55 ~~~C~~C~----~~~C~~~Cp~~ai~~~~~-----~v~i~~~~C~~C~~C~~~CP~~ai~~~ 107 (181)
T PRK10330 55 ATVCRQCE----DAPCANVCPNGAISRDKG-----FVHVMQERCIGCKTCVVACPYGAMEVV 107 (181)
T ss_pred CCcCcCcC----CcHHHHHcCcccEEccCC-----eEEeChhhCCCcchhhhhCCccCeEee
Confidence 35677775 678999999999986432 577899999999999999999999875
No 365
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.84 E-value=0.00016 Score=79.71 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=74.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-+|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... +
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~------G~~Vtlv~~~~~il~~------------------~----------------- 213 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRL------GSEVDVVEMFDQVIPA------------------A----------------- 213 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCCEEEEecCCCCCCc------------------C-----------------
Confidence 4799999999999999999998 9999999987753210 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
-..+.+.+.+.+++. ++++.++.+++++.++++ + .|.+.+ .+|+
T Consensus 214 -----------------------d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~-~-~v~~~~----~~~~------ 257 (471)
T PRK06467 214 -----------------------DKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDG-I-YVTMEG----KKAP------ 257 (471)
T ss_pred -----------------------CHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCE-E-EEEEEe----CCCc------
Confidence 013344556666667 999999999999766533 3 354432 1111
Q ss_pred cceEEEcCEEEEcCCCCCchh
Q 006539 268 RGVELRGRITLLAEGCRGSLS 288 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~vr 288 (641)
..++.+|.||.|+|..+.+.
T Consensus 258 -~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 258 -AEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred -ceEEEeCEEEEeecccccCC
Confidence 25799999999999988753
No 366
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.84 E-value=1.8e-05 Score=78.82 Aligned_cols=39 Identities=38% Similarity=0.526 Sum_probs=37.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~ 152 (641)
+|++|||||.+|+..|..|+++ |.+|+||||++.+||.+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~------gk~VLIvekR~HIGGNa 40 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQL------GKRVLIVEKRNHIGGNA 40 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHc------CCEEEEEeccccCCCcc
Confidence 7999999999999999999999 99999999999999976
No 367
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.84 E-value=0.00011 Score=74.12 Aligned_cols=39 Identities=31% Similarity=0.496 Sum_probs=35.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~ 152 (641)
..+|.|||+|++||+||+.|+++ .+|+++|....+||+.
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-------hdVTLfEA~~rlGGha 46 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-------HDVTLFEADRRLGGHA 46 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-------cceEEEeccccccCcc
Confidence 46799999999999999999994 8999999999999875
No 368
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.83 E-value=9.2e-05 Score=75.42 Aligned_cols=107 Identities=22% Similarity=0.313 Sum_probs=83.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccE
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (641)
.-..+|||||..||..+---.++ |.+|+++|-.+.+++. ++
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rL------GseVT~VEf~~~i~~~------mD--------------------------- 251 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRL------GSEVTVVEFLDQIGGV------MD--------------------------- 251 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhc------CCeEEEEEehhhhccc------cC---------------------------
Confidence 34589999999999999999999 9999999988776652 11
Q ss_pred EEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccccc
Q 006539 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (641)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~ 266 (641)
.++...+.+.+.+.|+++..+++|+....+.||.| .|.+.+ .++|+.
T Consensus 252 -------------------------~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v-~i~ve~---ak~~k~---- 298 (506)
T KOG1335|consen 252 -------------------------GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPV-EIEVEN---AKTGKK---- 298 (506)
T ss_pred -------------------------HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCce-EEEEEe---cCCCce----
Confidence 24444455555678999999999999999998855 677666 244443
Q ss_pred ccceEEEcCEEEEcCCCCCchh
Q 006539 267 QRGVELRGRITLLAEGCRGSLS 288 (641)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~vr 288 (641)
+++++|.+++|.|.++.+.
T Consensus 299 ---~tle~DvlLVsiGRrP~t~ 317 (506)
T KOG1335|consen 299 ---ETLECDVLLVSIGRRPFTE 317 (506)
T ss_pred ---eEEEeeEEEEEccCccccc
Confidence 7899999999999887643
No 369
>PRK10262 thioredoxin reductase; Provisional
Probab=97.82 E-value=0.00014 Score=76.06 Aligned_cols=103 Identities=18% Similarity=0.217 Sum_probs=75.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.|+|||+|..|+.+|..|++. +.+|+++++.+.+..
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~------~~~Vtlv~~~~~~~~------------------------------------- 183 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNI------ASEVHLIHRRDGFRA------------------------------------- 183 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhh------CCEEEEEEECCccCC-------------------------------------
Confidence 4799999999999999999998 999999998764211
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
...+.+.+.+.+++.||+++.++.++++..++ +.+.+|++.+. .++.
T Consensus 184 -----------------------~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~-~~~~~v~~~~~---~~~~------ 230 (321)
T PRK10262 184 -----------------------EKILIKRLMDKVENGNIILHTNRTLEEVTGDQ-MGVTGVRLRDT---QNSD------ 230 (321)
T ss_pred -----------------------CHHHHHHHHhhccCCCeEEEeCCEEEEEEcCC-ccEEEEEEEEc---CCCC------
Confidence 01223445666678899999999999997654 34556666531 0111
Q ss_pred cceEEEcCEEEEcCCCCCc
Q 006539 268 RGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (641)
+..++.+|.||.|.|..+.
T Consensus 231 ~~~~i~~D~vv~a~G~~p~ 249 (321)
T PRK10262 231 NIESLDVAGLFVAIGHSPN 249 (321)
T ss_pred eEEEEECCEEEEEeCCccC
Confidence 1257999999999997764
No 370
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.82 E-value=0.00014 Score=81.10 Aligned_cols=98 Identities=30% Similarity=0.365 Sum_probs=72.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-+|+|||||+.|+.+|..|++. |.+|+|+|+.+.+..
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~------g~~Vtli~~~~~l~~------------------------------------- 389 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGI------VRHVTVLEFADELKA------------------------------------- 389 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhc------CcEEEEEEeCCcCCh-------------------------------------
Confidence 4799999999999999999998 999999997653210
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHH-cCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~ 266 (641)
...+.+.+++ .||++++++.++++..++ +.+.+|.+.+. .+|+
T Consensus 390 ---------------------------~~~l~~~l~~~~gV~i~~~~~v~~i~~~~-~~v~~v~~~~~---~~~~----- 433 (515)
T TIGR03140 390 ---------------------------DKVLQDKLKSLPNVDILTSAQTTEIVGDG-DKVTGIRYQDR---NSGE----- 433 (515)
T ss_pred ---------------------------hHHHHHHHhcCCCCEEEECCeeEEEEcCC-CEEEEEEEEEC---CCCc-----
Confidence 0113344444 599999999999987654 55666776541 1121
Q ss_pred ccceEEEcCEEEEcCCCCCc
Q 006539 267 QRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (641)
+.++.+|.||.|.|..+.
T Consensus 434 --~~~i~~D~vi~a~G~~Pn 451 (515)
T TIGR03140 434 --EKQLDLDGVFVQIGLVPN 451 (515)
T ss_pred --EEEEEcCEEEEEeCCcCC
Confidence 357999999999997764
No 371
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.81 E-value=0.0002 Score=78.51 Aligned_cols=98 Identities=20% Similarity=0.265 Sum_probs=71.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... ++
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~------G~~Vtli~~~~~ll~~------~d---------------------------- 209 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSAL------GTRVTIVNRSTKLLRH------LD---------------------------- 209 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCcEEEEEccCccccc------cC----------------------------
Confidence 4799999999999999999998 9999999987643210 00
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
..+.+.+.+ ..+.|++++.++.|+++..+++ .+ .|.+.+
T Consensus 210 ------------------------~~~~~~l~~-~~~~gI~i~~~~~V~~i~~~~~-~v-~v~~~~-------------- 248 (452)
T TIGR03452 210 ------------------------EDISDRFTE-IAKKKWDIRLGRNVTAVEQDGD-GV-TLTLDD-------------- 248 (452)
T ss_pred ------------------------HHHHHHHHH-HHhcCCEEEeCCEEEEEEEcCC-eE-EEEEcC--------------
Confidence 122223333 2345899999999999986653 33 455544
Q ss_pred cceEEEcCEEEEcCCCCCch
Q 006539 268 RGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~v 287 (641)
|.++.+|.||+|+|..+..
T Consensus 249 -g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 249 -GSTVTADVLLVATGRVPNG 267 (452)
T ss_pred -CCEEEcCEEEEeeccCcCC
Confidence 4679999999999988753
No 372
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.81 E-value=0.00019 Score=79.28 Aligned_cols=100 Identities=24% Similarity=0.253 Sum_probs=73.2
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEEE
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 188 (641)
.|+|||||+.|+.+|..|++. |.+|+|+++. .+.. .+
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~------G~~Vtli~~~-~~l~------------------~~------------------ 218 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGI------GLDVTVMVRS-ILLR------------------GF------------------ 218 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHh------CCcEEEEEec-cccc------------------cc------------------
Confidence 699999999999999999999 9999999863 2111 00
Q ss_pred eecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccccccc
Q 006539 189 LTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQR 268 (641)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~ 268 (641)
-..+.+.+.+.+++.||++++++.++++...++ .+ .|++.+ |. .
T Consensus 219 ----------------------d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~-~~-~v~~~~------~~------~ 262 (484)
T TIGR01438 219 ----------------------DQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEA-KV-KVTFTD------ST------N 262 (484)
T ss_pred ----------------------CHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCC-eE-EEEEec------CC------c
Confidence 024445566777888999999999988876553 32 355443 11 0
Q ss_pred ceEEEcCEEEEcCCCCCch
Q 006539 269 GVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 269 g~~i~a~~vV~A~G~~s~v 287 (641)
+.++.+|.||.|.|..+.+
T Consensus 263 ~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 263 GIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred ceEEEeCEEEEEecCCcCC
Confidence 2478999999999987753
No 373
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.81 E-value=0.00015 Score=79.50 Aligned_cols=111 Identities=19% Similarity=0.172 Sum_probs=76.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.|+|||||..|+-+|..|++. |.+|+|++++....-
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~------G~~Vtlv~~~~~~~~------------------------------------- 309 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRL------GAEVHCLYRRTREDM------------------------------------- 309 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCEEEEEeecCcccC-------------------------------------
Confidence 4799999999999999999999 999999998752100
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccc---cccCCCccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMG---IAKDGSKKE 264 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g---~~~~g~~~~ 264 (641)
+ . .....+.+++.||++++++.++++..+++|++.+|.+..+. .+++|....
T Consensus 310 ----------~----------~-----~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~ 364 (449)
T TIGR01316 310 ----------T----------A-----RVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRF 364 (449)
T ss_pred ----------C----------C-----CHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeee
Confidence 0 0 01123455778999999999999987666777777664211 112332110
Q ss_pred c--cccceEEEcCEEEEcCCCCCc
Q 006539 265 N--FQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 265 ~--~~~g~~i~a~~vV~A~G~~s~ 286 (641)
. .....++.+|.||.|.|..+.
T Consensus 365 ~~~~~~~~~i~~D~Vi~AiG~~p~ 388 (449)
T TIGR01316 365 LPCGDAECKLEADAVIVAIGNGSN 388 (449)
T ss_pred eecCCceEEEECCEEEECCCCCCC
Confidence 0 111247999999999997664
No 374
>PRK10194 ferredoxin-type protein; Provisional
Probab=97.80 E-value=1.5e-05 Score=74.43 Aligned_cols=52 Identities=21% Similarity=0.294 Sum_probs=41.6
Q ss_pred CccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEECCC
Q 006539 580 GPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPE 631 (641)
Q Consensus 580 ~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~p~ 631 (641)
..|+.+||.+++.+.+...+.....||.+.|++||.|..+||++||+.++..
T Consensus 110 ~~C~~~CP~~Ai~~~~~~~~~~~~~i~~~~C~gCg~C~~~CP~~AI~~~~~~ 161 (163)
T PRK10194 110 RRCQDSCEPMAIIFRPTLSGIYQPQLNSQLCNGCGACAASCPVSAITAEYLH 161 (163)
T ss_pred CcchhhCCHhHeEeeecCCCcccceeCcccCcCcchhhhhCCccceEecccC
Confidence 3789999999999864323322468899999999999999999999976653
No 375
>PLN02568 polyamine oxidase
Probab=97.77 E-value=2.6e-05 Score=86.88 Aligned_cols=46 Identities=39% Similarity=0.522 Sum_probs=37.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~ 152 (641)
+..||+|||||++||++|..|++... ..+|++|+|+|++..+||.+
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~-~~~~~~v~v~E~~~~~GGr~ 49 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSA-ANDMFELTVVEGGDRIGGRI 49 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhccc-ccCCceEEEEeCCCCcCCeE
Confidence 45799999999999999999998700 00139999999999988865
No 376
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=97.77 E-value=6.7e-06 Score=85.56 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=43.3
Q ss_pred CCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCee
Q 006539 568 KIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 626 (641)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~ 626 (641)
+.|..|| -++.|+..||.+++++.++.. ..++.+|.+.|++||.|..+||++||+
T Consensus 178 ~~~~~~c---~~~~Cv~~CP~~Ai~~~~~~~-~~~~~id~~~Ci~Cg~Ci~~CP~~a~~ 232 (341)
T TIGR02066 178 EAVRNVC---EIPSVVAACPTGALKPRRDGK-NKSLEVDVEKCIYCGNCYTMCPAMPIF 232 (341)
T ss_pred HHHHhhc---CCCceEeeCchhhceecccCC-CCceeeccccCCcCCchHHhCchhhcc
Confidence 4555554 256899999999999853322 226999999999999999999999985
No 377
>PRK09898 hypothetical protein; Provisional
Probab=97.76 E-value=2.5e-05 Score=75.91 Aligned_cols=56 Identities=13% Similarity=0.296 Sum_probs=46.5
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEE
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 628 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~ 628 (641)
++..|..|. +.+|+.+||.+++.+.++ .+ .+.+|.+.|++|+.|..+||+++|...
T Consensus 119 ~~~~C~~C~----~~~C~~~CP~gAi~~~~~-~g--~v~vd~~~CigC~~C~~aCP~~ai~~~ 174 (208)
T PRK09898 119 TADTCRQCK----EPQCMNVCPIGAITWQQK-EG--CITVDHKRCIGCSACTTACPWMMATVN 174 (208)
T ss_pred eCccCCCcc----CcchhhhCCcceEEeecc-CC--eEEeccccCCCcCcccccCCCCCCEec
Confidence 466788875 568999999999887543 22 688999999999999999999999875
No 378
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.76 E-value=0.00033 Score=77.13 Aligned_cols=102 Identities=20% Similarity=0.240 Sum_probs=74.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-+|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... +
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------------------~----------------- 208 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRL------GVKVTVFERGDRILPL------------------E----------------- 208 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCcCcc------------------h-----------------
Confidence 4799999999999999999998 9999999987654210 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
-..+.+.+.+.+++. |++++++.++++..+++..+ .++..+ |+
T Consensus 209 -----------------------d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v-~~~~~~------~~------ 251 (460)
T PRK06292 209 -----------------------DPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKV-EELEKG------GK------ 251 (460)
T ss_pred -----------------------hHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceE-EEEEcC------Cc------
Confidence 013445566667778 99999999999976543222 232222 11
Q ss_pred cceEEEcCEEEEcCCCCCchh
Q 006539 268 RGVELRGRITLLAEGCRGSLS 288 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~vr 288 (641)
+.++.+|.||.|.|..+.+.
T Consensus 252 -~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 252 -TETIEADYVLVATGRRPNTD 271 (460)
T ss_pred -eEEEEeCEEEEccCCccCCC
Confidence 36799999999999887643
No 379
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=97.75 E-value=1.1e-05 Score=77.05 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=46.5
Q ss_pred EecCCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEEC
Q 006539 563 RLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 629 (641)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~ 629 (641)
...|.+.|+.|. .|+++||.+++...++ + ...++.+.|+.||.|..+||++||++..
T Consensus 109 ~~id~~~Ci~Cg------~Cv~aCp~~ai~~~~~--~--~~~v~~~~C~~Cg~Cv~vCP~~AI~~~~ 165 (191)
T PRK05113 109 AFIDEDNCIGCT------KCIQACPVDAIVGATK--A--MHTVISDLCTGCDLCVAPCPTDCIEMIP 165 (191)
T ss_pred eEEeCCcCCCCC------hhhhhCCHhhhecccC--C--ceeecCCcCCchHHHHHHcCcCceEEee
Confidence 344788999986 7999999998875422 2 3578899999999999999999999763
No 380
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=97.75 E-value=1.8e-05 Score=73.69 Aligned_cols=58 Identities=10% Similarity=0.247 Sum_probs=47.2
Q ss_pred CCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEECCC
Q 006539 567 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPE 631 (641)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~p~ 631 (641)
+..|..|. +..|+.+||.+++....+ ++ .+.++++.|++|+.|..+||+++|.|+...
T Consensus 61 ~~~C~~C~----~~~C~~~CP~~ai~~~~~-~~--~~~i~~~~C~~C~~C~~aCP~~ai~~~~~~ 118 (161)
T TIGR02951 61 SISCNHCA----DPACVKNCPTGAMYKREE-DG--LVLVDQDKCIGCRYCVWACPYGAPQYDPQQ 118 (161)
T ss_pred CccCCCcC----CcchHHhCCCCCEEeecC-CC--cEEECHHhCCCchHHHhhCCCCCcEEcCCC
Confidence 56787775 668999999998876422 22 588999999999999999999999997543
No 381
>PRK06991 ferredoxin; Provisional
Probab=97.75 E-value=1.2e-05 Score=80.56 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=45.3
Q ss_pred cCCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEE
Q 006539 565 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 628 (641)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~ 628 (641)
.|.+.|+.|. .|+.+||.+++.+.+. + ...++...|++||.|..+||+++|++.
T Consensus 82 id~~~CigCg------~Cv~aCP~~AI~~~~~--~--~~~v~~~~CigCg~Cv~vCP~~AI~~~ 135 (270)
T PRK06991 82 IDEQLCIGCT------LCMQACPVDAIVGAPK--Q--MHTVLADLCTGCDLCVPPCPVDCIDMV 135 (270)
T ss_pred EccccCCCCc------HHHHhCCHhheecccc--c--ceeeCHhhCCCchHHHhhCCcCCeEee
Confidence 3778999986 7999999999876432 1 357889999999999999999999865
No 382
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=97.75 E-value=1.3e-05 Score=67.93 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=47.3
Q ss_pred cCCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEECC
Q 006539 565 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 630 (641)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~p 630 (641)
.+.+.|+.|. .|+.+||.+++++..+......+.++.+.|+.||.|..+||.+||++..-
T Consensus 26 ~~~~~Ci~Cg------~C~~~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~ 85 (99)
T COG1145 26 IDAEKCIGCG------LCVKVCPTGAIELIEEGLLLPEVVIDPDLCVLCGACLKVCPVDALSIAEE 85 (99)
T ss_pred eCccccCCCC------CchhhCCHHHhhcccccCccceEEEccccCccccchHhhCCcCCeehhhc
Confidence 3667799986 79999999998874321001368999999999999999999999886543
No 383
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=97.74 E-value=1.3e-05 Score=78.28 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=46.4
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEEC
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 629 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~ 629 (641)
|++.|..|. .|.++|+-+++.+.++ + .+.+|+..|-+||+|.+.||..||+...
T Consensus 67 ~~e~C~~CG------~C~~vC~f~Ai~~~~~--~--~~~~~~~lC~GCgaC~~~CP~~AI~~~~ 120 (284)
T COG1149 67 DPEKCIRCG------KCAEVCRFGAIVVLPG--G--KPVLNPDLCEGCGACSIVCPEPAIEEEP 120 (284)
T ss_pred ChhhccccC------cHHHhCCCCeEEEcCC--C--ceecCcccccCcccceeeCCCccccccc
Confidence 667799886 7999999999987543 1 6999999999999999999999998554
No 384
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=97.74 E-value=1.6e-05 Score=67.73 Aligned_cols=53 Identities=11% Similarity=0.266 Sum_probs=42.6
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCee
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 626 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~ 626 (641)
+.+.|..|. .|+.+||.+++.+... +...+.++...|+.||.|..+||+++|.
T Consensus 32 ~~~~C~~C~------~C~~~CP~~~i~~~~~--g~~~~~i~~~~C~~Cg~C~~~CP~~Ai~ 84 (101)
T TIGR00402 32 FSAVCTRCG------ECASACENNILQLGQQ--GQPTVEFDNAECDFCGKCAEACPTNAFH 84 (101)
T ss_pred CcCcCcChh------HHHHHcCcccceeccC--CceeeEecCccCcCccChhhHCCccccC
Confidence 345787775 6999999998886532 2235789999999999999999999996
No 385
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=97.73 E-value=0.00073 Score=66.93 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=32.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhhc-hhcCCCCcEEEEcCCCCC
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLC-REKNVDLSVCVVEKGAEV 148 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~-~~~~~G~~V~viEk~~~~ 148 (641)
..+|+|||+|..||++|+.+.+.. ++..|-++|.|++-+...
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e 45 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTE 45 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcc
Confidence 467999999999999998888741 122456889999877643
No 386
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=97.72 E-value=1.8e-05 Score=79.43 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=44.5
Q ss_pred EEecCCCCcccccCCCCCCccccccCCee-EEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEE
Q 006539 562 LRLRDPKIPELVNLPEYAGPESRYCPARV-YEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 628 (641)
Q Consensus 562 l~~~~~~~~~~~~~~~~~~~~~~~CP~~~-~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~ 628 (641)
+...|++.|..|. .|..+||.++ .+..+.++ .+..+|...|+.||.|..+||++||+++
T Consensus 195 i~~~~~~~C~~C~------~C~~vCP~~~vl~~~~~~~--~~~~i~~~~C~~Cg~Cv~~CP~~Ai~f~ 254 (255)
T TIGR02163 195 IAASDREKCTNCM------DCFNVCPEPQVLRMPLKKG--GSTLVLSGDCTLCGRCIDVCHEDVLGFT 254 (255)
T ss_pred EEeeccccCeEcC------CccCcCCCCceeeccccCC--CceEeccccccchhHHHHhCCccccccc
Confidence 3333578899886 6999999885 44322111 2467889999999999999999999875
No 387
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=97.72 E-value=8.6e-06 Score=84.09 Aligned_cols=59 Identities=17% Similarity=0.258 Sum_probs=47.1
Q ss_pred ecCCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEE
Q 006539 564 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 628 (641)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~ 628 (641)
..|.+.|..|. .|+.+||.+++.+.....+.....++...|..||.|..+||++||.+.
T Consensus 44 ~~~~~~C~~C~------~C~~~Cp~~a~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~ 102 (295)
T TIGR02494 44 LFKENRCLGCG------KCVEVCPAGTARLSELADGRNRIIIRREKCTHCGKCTEACPSGALSIV 102 (295)
T ss_pred EEccccCCCCc------hhhhhCcccccccccccCCCcceeechhhcCchhHhhccCcHhHHhhh
Confidence 33788999996 799999999987432111223689999999999999999999999874
No 388
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=97.71 E-value=1.2e-05 Score=82.81 Aligned_cols=56 Identities=16% Similarity=0.251 Sum_probs=45.6
Q ss_pred CCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEEC
Q 006539 567 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 629 (641)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~ 629 (641)
...|..|. +.+|+.+||.+++...++ .+ .+.+|.+.|++|+.|..+||+++|++.+
T Consensus 109 ~~~C~hC~----~p~Cv~aCP~gAi~k~~~-~g--~V~id~dkCigCg~Cv~aCP~gai~~~~ 164 (328)
T PRK10882 109 KKQCMHCV----DPNCVSVCPVSALTKDPK-TG--IVHYDKDVCTGCRYCMVACPFNVPKYDY 164 (328)
T ss_pred cccCCCcC----chhhHhhCCCCCEEeccc-CC--cccCCHHHcCcccHHHHhCCccceeccc
Confidence 45677765 678999999999987532 22 5789999999999999999999998654
No 389
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=3.1e-05 Score=82.79 Aligned_cols=40 Identities=38% Similarity=0.526 Sum_probs=37.1
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcccc
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIIS 154 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~ 154 (641)
.|+|+|||+|||++|+.|+.+ |++|+|+|.++.+||.+.+
T Consensus 2 rVai~GaG~AgL~~a~~La~~------g~~vt~~ea~~~~GGk~~s 41 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADA------GYDVTLYEARDRLGGKVAS 41 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhC------CCceEEEeccCccCceeee
Confidence 499999999999999999999 9999999999999987643
No 390
>PRK07118 ferredoxin; Validated
Probab=97.71 E-value=1.9e-05 Score=79.91 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=46.7
Q ss_pred CCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEECCCC
Q 006539 567 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPEG 632 (641)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~p~g 632 (641)
...|..|. .|+.+||.+++.+.++ ..++|++.|+.||.|..+||+++|.|...+.
T Consensus 212 ~~~Ci~Cg------~Cv~~CP~~AI~~~~~-----~~vId~~~C~~Cg~C~~~CP~~AI~~~~~~~ 266 (280)
T PRK07118 212 EVGCIGCG------KCVKACPAGAITMENN-----LAVIDQEKCTSCGKCVEKCPTKAIRILNKPP 266 (280)
T ss_pred ccccccch------HHHhhCCcCcEEEeCC-----cEEEcCCcCCCHHHHHHhCCccccEeecccc
Confidence 45677774 7999999999998654 6789999999999999999999999875543
No 391
>PRK13409 putative ATPase RIL; Provisional
Probab=97.71 E-value=2.2e-05 Score=88.36 Aligned_cols=62 Identities=27% Similarity=0.426 Sum_probs=45.6
Q ss_pred EEecCCCCcc--cccCCCCCCccccccCC-----eeEEEecCCCCceeEEEecCCCccCCCccccCCCCCee-EECCC
Q 006539 562 LRLRDPKIPE--LVNLPEYAGPESRYCPA-----RVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK-WTVPE 631 (641)
Q Consensus 562 l~~~~~~~~~--~~~~~~~~~~~~~~CP~-----~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~-w~~p~ 631 (641)
|-|.|.+.|. .|+ ..|..+||. .|+++.++ .+ +..|+.+.|++||.|..+||++||+ -+-|+
T Consensus 4 ~~~~~~~~c~~~~c~-----~~c~~~cp~~~~~~~~~~~~~~-~~--~~~~~e~~c~~c~~c~~~cp~~a~~i~~~p~ 73 (590)
T PRK13409 4 IAVVDYDRCQPKKCN-----YECIKYCPVVRTGEETIEIDED-DG--KPVISEELCIGCGICVKKCPFDAISIVNLPE 73 (590)
T ss_pred EEEeeccccCcchhh-----hhHHhhCCCcccCCeEEEEcCC-CC--CceeeHhhccccccccccCCcceEEEeeCch
Confidence 3344555554 343 468999996 48888543 22 6899999999999999999999998 55554
No 392
>PRK12831 putative oxidoreductase; Provisional
Probab=97.70 E-value=0.00025 Score=77.95 Aligned_cols=111 Identities=24% Similarity=0.262 Sum_probs=75.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.|+|||||..|+-+|..|.+. |.+|+|++++....
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~------Ga~Vtlv~r~~~~~-------------------------------------- 317 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRL------GAEVHIVYRRSEEE-------------------------------------- 317 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHc------CCEEEEEeecCccc--------------------------------------
Confidence 4799999999999999999999 99999999765210
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccc---cccCCCccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMG---IAKDGSKKE 264 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g---~~~~g~~~~ 264 (641)
++. .... .+.+++.||++++++.++++..+++|++.+|.+..+. .+++|....
T Consensus 318 ---------m~a----------~~~e-----~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~ 373 (464)
T PRK12831 318 ---------LPA----------RVEE-----VHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRP 373 (464)
T ss_pred ---------CCC----------CHHH-----HHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccc
Confidence 000 0011 1335678999999999999987666777777664221 123343211
Q ss_pred ccccc--eEEEcCEEEEcCCCCCc
Q 006539 265 NFQRG--VELRGRITLLAEGCRGS 286 (641)
Q Consensus 265 ~~~~g--~~i~a~~vV~A~G~~s~ 286 (641)
...+| .++.+|.||.|.|..+.
T Consensus 374 ~~~~g~~~~i~~D~Vi~AiG~~p~ 397 (464)
T PRK12831 374 VEIEGSEFVLEVDTVIMSLGTSPN 397 (464)
T ss_pred eecCCceEEEECCEEEECCCCCCC
Confidence 11112 47999999999997654
No 393
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=97.70 E-value=1.6e-05 Score=85.53 Aligned_cols=51 Identities=25% Similarity=0.357 Sum_probs=44.6
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeE
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKW 627 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w 627 (641)
|++.|+.|. .|+..||.+++...+. ...++.+.|..|+.|...||+++|+.
T Consensus 8 d~~~Ci~C~------~C~~~CP~~ai~~~~~-----~~~i~~~~C~~C~~C~~~CP~~AI~~ 58 (411)
T TIGR03224 8 DPEICIRCN------TCEETCPIDAITHDDR-----NYVVKADVCNGCMACVSPCPTGAIDN 58 (411)
T ss_pred CcccCcCcc------chhhhCCcccEeccCC-----ceEeCcccCcCHHHHHhhcCccccee
Confidence 788999986 7999999999886432 46789999999999999999999984
No 394
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.70 E-value=0.00025 Score=79.16 Aligned_cols=98 Identities=27% Similarity=0.306 Sum_probs=72.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-+|+|||||..|+.+|..|+.. +.+|+|+++++.+..
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~------~~~Vtlv~~~~~l~~------------------------------------- 388 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGI------VKHVTVLEFAPELKA------------------------------------- 388 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCEEEEEEECccccc-------------------------------------
Confidence 4799999999999999999998 999999987754311
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHH-cCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~ 266 (641)
...+.+.+.+ .||++++++.++++..++ +.+.+|.+.+. .+|+
T Consensus 389 ---------------------------~~~l~~~l~~~~gI~i~~~~~v~~i~~~~-g~v~~v~~~~~---~~g~----- 432 (517)
T PRK15317 389 ---------------------------DQVLQDKLRSLPNVTIITNAQTTEVTGDG-DKVTGLTYKDR---TTGE----- 432 (517)
T ss_pred ---------------------------cHHHHHHHhcCCCcEEEECcEEEEEEcCC-CcEEEEEEEEC---CCCc-----
Confidence 0112333444 589999999999997654 56666776541 1222
Q ss_pred ccceEEEcCEEEEcCCCCCc
Q 006539 267 QRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (641)
..++.+|.|+.|.|..+.
T Consensus 433 --~~~i~~D~v~~~~G~~p~ 450 (517)
T PRK15317 433 --EHHLELEGVFVQIGLVPN 450 (517)
T ss_pred --EEEEEcCEEEEeECCccC
Confidence 257999999999997764
No 395
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=97.70 E-value=1.5e-05 Score=78.34 Aligned_cols=52 Identities=15% Similarity=0.337 Sum_probs=44.6
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCee--EEC
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK--WTV 629 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~--w~~ 629 (641)
....|..|. .|+..||.++++..+ .++|+++.|+.|+.|..+||+++++ |..
T Consensus 191 ~e~kc~~c~------~cv~~cp~~Ai~~~~------~~~I~~~~ci~c~~c~~ac~~gav~~~W~~ 244 (354)
T COG2768 191 VEEKCYDCG------LCVKICPVGAITLTK------VVKIDYEKCIGCGQCMEACPYGAVDQNWEE 244 (354)
T ss_pred eeecccccc------hhhhhCCCcceeccc------ceeechhhccchhhhhhhccCcccccchhh
Confidence 346788886 799999999999652 5899999999999999999999986 753
No 396
>PRK08764 ferredoxin; Provisional
Probab=97.66 E-value=2.6e-05 Score=70.11 Aligned_cols=57 Identities=14% Similarity=0.083 Sum_probs=44.1
Q ss_pred EEecCCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEE
Q 006539 562 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 628 (641)
Q Consensus 562 l~~~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~ 628 (641)
+.+.+.+.|+.|. .|+++||.+++...+. + ...++.+.|+.||.|..+||++||+|+
T Consensus 79 ~~~~~~~~Ci~C~------~Cv~aCp~~ai~~~~~--~--~~~v~~~~C~~Cg~Cv~~CP~~Ai~~~ 135 (135)
T PRK08764 79 VAWIVEADCIGCT------KCIQACPVDAIVGGAK--H--MHTVIAPLCTGCELCVPACPVDCIELH 135 (135)
T ss_pred eEEECcccCcCcc------hHHHhCChhhcCccCC--C--ceeecCCcCcCccchhhhcCccceEeC
Confidence 3333446788875 7999999998875322 1 356889999999999999999999874
No 397
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.65 E-value=0.00045 Score=71.19 Aligned_cols=97 Identities=23% Similarity=0.307 Sum_probs=70.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-+|+|||+|+.|+-+|..|++. +.+|+++++.+.+..
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~------~~~V~~v~~~~~~~~------------------------------------- 178 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRI------AKKVTLVHRRDKFRA------------------------------------- 178 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhh------cCEEEEEEeCcccCc-------------------------------------
Confidence 4799999999999999999998 999999998653210
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~ 266 (641)
...+.+.+++. ||+++.++.++++..++ .+..|.+.+. .+|+
T Consensus 179 ---------------------------~~~~~~~l~~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~~---~~g~----- 221 (300)
T TIGR01292 179 ---------------------------EKILLDRLRKNPNIEFLWNSTVKEIVGDN--KVEGVKIKNT---VTGE----- 221 (300)
T ss_pred ---------------------------CHHHHHHHHhCCCeEEEeccEEEEEEccC--cEEEEEEEec---CCCc-----
Confidence 01133444556 99999999999987543 4545655320 1122
Q ss_pred ccceEEEcCEEEEcCCCCCc
Q 006539 267 QRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (641)
+.++.+|.||.|+|..+.
T Consensus 222 --~~~i~~D~vi~a~G~~~~ 239 (300)
T TIGR01292 222 --EEELKVDGVFIAIGHEPN 239 (300)
T ss_pred --eEEEEccEEEEeeCCCCC
Confidence 468999999999997664
No 398
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=97.60 E-value=3.2e-05 Score=80.45 Aligned_cols=54 Identities=19% Similarity=0.361 Sum_probs=42.9
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEECCC
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPE 631 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~p~ 631 (641)
+++.|..|. .+.|..+||.+++.. + ..+|.+.|++|+.|..+||++||+++.++
T Consensus 300 d~dkCi~Cg----~C~~~~aCPt~AI~~--~------~~Id~~~Ci~CGaCV~aCP~~AI~~~~~~ 353 (391)
T TIGR03287 300 NPERCENCD----PCLVEEACPVPAIKK--D------GTLNTEDCFGCGYCAEICPGGAFEVNLGS 353 (391)
T ss_pred chhhCcCCC----CCcCCcCCCHhhEec--c------ceeChHhCcChHHHHhhCCccceEEeCCe
Confidence 678898886 222358999998872 2 25889999999999999999999987543
No 399
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=97.59 E-value=2.4e-05 Score=77.46 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=43.4
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCee
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 626 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~ 626 (641)
|.+.|..|. .|+.+||.+++.+.++ ...+|.+.|..||.|...||.+||+
T Consensus 146 d~~~C~~C~------~C~~~CP~~ai~~~~~-----~~~i~~~~C~~Cg~C~~~CP~~AI~ 195 (234)
T TIGR02700 146 DRKRCKGCG------ICVDACPRSAIDMVDG-----KAFIRLLKCVGCGKCKEACPYNAIH 195 (234)
T ss_pred ChhHCcCcc------hHHHhCCcccEEecCC-----ceEEchhhCCccchHHhhCCCCcee
Confidence 667888885 7999999999987543 4688999999999999999999997
No 400
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.59 E-value=0.00011 Score=83.30 Aligned_cols=39 Identities=41% Similarity=0.621 Sum_probs=36.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCc
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~ 151 (641)
-..|.|||+|||||+||-.|-+. |+.|+|+||...+|+-
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~------gh~v~vyer~dr~ggl 1823 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKA------GHTVTVYERSDRVGGL 1823 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhc------CcEEEEEEecCCcCce
Confidence 46799999999999999999999 9999999999998873
No 401
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=97.58 E-value=3.4e-05 Score=78.23 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=41.8
Q ss_pred cCCCCcccccCCCCCCccccccCCeeEEE--ecCCCCceeEEEecCCCccCCCccccCCCCCeeEE
Q 006539 565 RDPKIPELVNLPEYAGPESRYCPARVYEY--VPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 628 (641)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~CP~~~~~~--~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~ 628 (641)
.|.+.|..|. .|..+||.+.... ..+++. ...++...|+.||.|..+||++||++.
T Consensus 205 ~d~~~C~~C~------~C~~~CP~~~i~~~~~~~~~~--~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~ 262 (271)
T PRK09477 205 HDRQKCTRCM------DCFHVCPEPQVLRPPLKGKQS--PSQVTSGDCITCGRCIDVCSEDVFNFT 262 (271)
T ss_pred CCcccCcccC------CcCCcCCCcceecccccCCCc--cceeCcccCcChhHHHhhcCccceeec
Confidence 3678899886 7999999885432 111111 235788999999999999999999864
No 402
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=97.56 E-value=2.8e-05 Score=72.74 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=42.0
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCC------CCceeEEEecCCCccCCCccccCCCCCeeEE
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDE------KNQLKLQINAQNCLHCKACDIKDPKQNIKWT 628 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~------~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~ 628 (641)
+.+.|+.|. .|+.+||.++..+.... .....+.+|...|+.||.|..+||++||.+.
T Consensus 57 ~~~~Ci~Cg------~C~~aCP~~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~C~~~CP~~AI~~~ 119 (167)
T CHL00014 57 EFDKCIACE------VCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGVCIFCGNCVEYCPTNCLSMT 119 (167)
T ss_pred ccccCCCcC------cHHHhCCCCCccccccccccccccccccccCCCCcCcCccchHhhcCcCceecC
Confidence 457799886 79999999865432110 0011467888999999999999999999753
No 403
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.55 E-value=0.00024 Score=78.54 Aligned_cols=154 Identities=25% Similarity=0.323 Sum_probs=102.0
Q ss_pred CCCCCccCCCCCCccccccccccccccccccccccccccccccccccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEE
Q 006539 61 QNPCFFSSGYFPNGVNLKGFGRNESGVSCAKLFFRSFCSEMCRESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVC 140 (641)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~ 140 (641)
.+..+++++|+|+..|+.+.+......-.. .......+......-..+|||||.=||-+|..|.+. |.+|.
T Consensus 102 YDkLilATGS~pfi~PiPG~~~~~v~~~R~---i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~------Gm~~~ 172 (793)
T COG1251 102 YDKLIIATGSYPFILPIPGSDLPGVFVYRT---IDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDL------GMEVT 172 (793)
T ss_pred cceeEEecCccccccCCCCCCCCCeeEEec---HHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhC------CCceE
Confidence 366788999999988877654322211110 000000000011122379999999999999999999 99999
Q ss_pred EEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHH
Q 006539 141 VVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGG 220 (641)
Q Consensus 141 viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~ 220 (641)
|++-.+.+ +.+-+ ++ .-.+.|..
T Consensus 173 Vvh~~~~l--------------MerQL------------------------------------------D~-~ag~lL~~ 195 (793)
T COG1251 173 VVHIAPTL--------------MERQL------------------------------------------DR-TAGRLLRR 195 (793)
T ss_pred EEeecchH--------------HHHhh------------------------------------------hh-HHHHHHHH
Confidence 99865532 10000 00 11234677
Q ss_pred HHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCCc
Q 006539 221 KAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLRE 299 (641)
Q Consensus 221 ~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~~ 299 (641)
..++.|++++.+..++++.. ++.+.+|++.| |..+.||.||.|+|.++. -.+....++..
T Consensus 196 ~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~D---------------G~~i~ad~VV~a~GIrPn--~ela~~aGlav 255 (793)
T COG1251 196 KLEDLGIKVLLEKNTEEIVG--EDKVEGVRFAD---------------GTEIPADLVVMAVGIRPN--DELAKEAGLAV 255 (793)
T ss_pred HHHhhcceeecccchhhhhc--CcceeeEeecC---------------CCcccceeEEEecccccc--cHhHHhcCcCc
Confidence 77889999999988877765 35677888877 788999999999999996 45666666653
No 404
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.55 E-value=2.4e-05 Score=45.43 Aligned_cols=21 Identities=29% Similarity=0.833 Sum_probs=19.1
Q ss_pred eEEEecCCCccCCCccccCCC
Q 006539 602 KLQINAQNCLHCKACDIKDPK 622 (641)
Q Consensus 602 ~~~~~~~~C~~C~~C~~~cp~ 622 (641)
.+.||.+.|++|++|..+||.
T Consensus 2 ~~~iD~~rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 2 GMVIDLERCIGCGACEVACPV 22 (22)
T ss_pred ceEEccccccCchhHHHhhCc
Confidence 378999999999999999983
No 405
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.55 E-value=5.3e-05 Score=87.02 Aligned_cols=56 Identities=25% Similarity=0.516 Sum_probs=46.4
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEECC
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 630 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~p 630 (641)
.+..|..|. ..+|+.+||.+++...++ .+.+|.+.|++|+.|..+||+++|++...
T Consensus 52 ~~~~C~~C~----~~~C~~~CP~~ai~~~~~-----~~~id~~~C~~C~~C~~~CP~~ai~~~~~ 107 (654)
T PRK12769 52 SAVTCHHCE----DAPCARSCPNGAISHVDD-----SIQVNQQKCIGCKSCVVACPFGTMQIVLT 107 (654)
T ss_pred CCccCCCCC----ChhHhhhCCccceeccCC-----eEEEecccccCcChhcccCCccCeeeccc
Confidence 356788776 667999999999886433 68899999999999999999999998743
No 406
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=97.55 E-value=3e-05 Score=80.52 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=42.7
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEe--c--CCCC----ceeEEEecCCCccCCCccccCCCCCeeEE
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYV--P--DEKN----QLKLQINAQNCLHCKACDIKDPKQNIKWT 628 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~--~--~~~~----~~~~~~~~~~C~~C~~C~~~cp~~~i~w~ 628 (641)
|.+.|+.|. .|..+||.+++... . +..+ ...+.+|+..|..||.|..+||++||++.
T Consensus 245 d~~~Ci~C~------~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~d~~~C~gCg~C~~~CP~~AI~~~ 309 (312)
T PRK14028 245 DHSKCIMCR------KCWLYCPDDAIIEAWREAEGPRGRKFRMKMIDFDYQYCKGCGVCAEVCPTGAIQMV 309 (312)
T ss_pred CcccCcCcc------cccccCChhhhhcccccccCcccccccceeecCCcccCcCcCchhhhCCHhheEec
Confidence 778999986 79999999876421 1 1011 11245688899999999999999999875
No 407
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.55 E-value=0.0007 Score=72.10 Aligned_cols=99 Identities=21% Similarity=0.314 Sum_probs=67.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.|+|||||++|+.+|..|++.....+...+|+|+. .+.+.. .+
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~-~~~~l~------------------~~----------------- 189 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA-GASLLP------------------GF----------------- 189 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEe-CCcccc------------------cC-----------------
Confidence 479999999999999999986432211124788883 221110 00
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
...+...+.+.+++.||+++.++.++++. + + .|.+.+
T Consensus 190 -----------------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~-~---~v~~~~-------------- 226 (364)
T TIGR03169 190 -----------------------PAKVRRLVLRLLARRGIEVHEGAPVTRGP--D-G---ALILAD-------------- 226 (364)
T ss_pred -----------------------CHHHHHHHHHHHHHCCCEEEeCCeeEEEc--C-C---eEEeCC--------------
Confidence 01334456677788999999999998874 2 2 355554
Q ss_pred cceEEEcCEEEEcCCCCCc
Q 006539 268 RGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~ 286 (641)
|.++.+|.||.|.|..+.
T Consensus 227 -g~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 227 -GRTLPADAILWATGARAP 244 (364)
T ss_pred -CCEEecCEEEEccCCChh
Confidence 578999999999997753
No 408
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.50 E-value=0.00052 Score=72.76 Aligned_cols=109 Identities=21% Similarity=0.236 Sum_probs=69.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCc-EEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~-V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (641)
-.|+|||+|+.|+.+|..|++. |.+ |+|++++.....
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~------g~~~Vtvi~~~~~~~~------------------------------------ 210 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLL------GAEKVYLAYRRTINEA------------------------------------ 210 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeecchhhC------------------------------------
Confidence 3699999999999999999888 887 999987542100
Q ss_pred EEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCcccccc---CCCcc
Q 006539 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAK---DGSKK 263 (641)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~---~g~~~ 263 (641)
+ . ...+.+.+++.||++++++.+++++.+ +.+..|.+.+...++ .+.+.
T Consensus 211 -----------~----------~-----~~~~~~~l~~~gi~i~~~~~v~~i~~~--~~~~~v~~~~~~~~~~~~~~~~~ 262 (352)
T PRK12770 211 -----------P----------A-----GKYEIERLIARGVEFLELVTPVRIIGE--GRVEGVELAKMRLGEPDESGRPR 262 (352)
T ss_pred -----------C----------C-----CHHHHHHHHHcCCEEeeccCceeeecC--CcEeEEEEEEEEecCcCcccCcC
Confidence 0 0 011233456789999999999888643 345455543311100 00000
Q ss_pred --cccccceEEEcCEEEEcCCCCCc
Q 006539 264 --ENFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 264 --~~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
.....+.++.+|.||.|.|..+.
T Consensus 263 ~~~~~~~~~~i~~D~vi~a~G~~p~ 287 (352)
T PRK12770 263 PVPIPGSEFVLEADTVVFAIGEIPT 287 (352)
T ss_pred ceecCCCeEEEECCEEEECcccCCC
Confidence 00012468999999999997763
No 409
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=97.47 E-value=4e-05 Score=79.61 Aligned_cols=50 Identities=16% Similarity=0.291 Sum_probs=41.6
Q ss_pred CCCCcccccCCCCCCccccccCC---eeEEEecCCCCceeEEEecCCCccCCCccccCCCCCee
Q 006539 566 DPKIPELVNLPEYAGPESRYCPA---RVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 626 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~---~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~ 626 (641)
|.+.|..|. .|+.+||. +++.+.+. ++.+|.+.|+.||.|..+||++||.
T Consensus 167 d~~~C~~Cg------~C~~~Cp~~a~~ai~~~~~-----~~~id~~~C~~Cg~Cv~~CP~~Al~ 219 (314)
T TIGR02912 167 DADRCIGCG------ACVKVCKKKAVGALSFENY-----KVVRDHSKCIGCGECVLKCPTGAWT 219 (314)
T ss_pred eCccCCcch------HHHHhcChhhcCceeccCC-----eEEeCCCcCcCcchhhhhCCHhhcc
Confidence 567899886 79999996 45655322 6889999999999999999999986
No 410
>PLN02529 lysine-specific histone demethylase 1
Probab=97.46 E-value=0.00013 Score=83.31 Aligned_cols=41 Identities=39% Similarity=0.542 Sum_probs=37.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~ 152 (641)
...||+|||||++||++|..|++. |++|+|+|++..+||..
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~------g~~v~v~E~~~~~GG~~ 199 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSF------GFKVVVLEGRNRPGGRV 199 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHc------CCcEEEEecCccCcCce
Confidence 467999999999999999999999 99999999998887754
No 411
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.43 E-value=0.00016 Score=75.01 Aligned_cols=45 Identities=36% Similarity=0.535 Sum_probs=38.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcccc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIIS 154 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~ 154 (641)
+..+|+|||||++||++|++|+++ .+...|+|+|+.+.+||.+.+
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~----~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARL----GPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhc----CCCceEEEEecCCcccceeee
Confidence 457899999999999999999998 344556779999999997765
No 412
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.41 E-value=0.0011 Score=73.17 Aligned_cols=119 Identities=21% Similarity=0.180 Sum_probs=72.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCC-cEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~-~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (641)
-.|+|||||..|+-+|..+.+. |. +|++++....+.... ..
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~------ga~~Vt~~~~~~~~~~~~-----------------~~--------------- 323 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQ------GAKSVTQRDIMPMPPSRR-----------------NK--------------- 323 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHc------CCCeEEEccccCCCcccc-----------------cc---------------
Confidence 4699999999999999988887 76 688776544221100 00
Q ss_pred EEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccccc
Q 006539 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (641)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~ 266 (641)
....+ ........+.+++.||++++++.++++..+ ++++.+|++..+.. .+|.+...-
T Consensus 324 -------~~~~~-------------~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~-~g~v~~V~~~~~~~-~~g~~~~~~ 381 (471)
T PRK12810 324 -------NNPWP-------------YWPMKLEVSNAHEEGVEREFNVQTKEFEGE-NGKVTGVKVVRTEL-GEGDFEPVE 381 (471)
T ss_pred -------ccCCc-------------ccchHHHHHHHHHcCCeEEeccCceEEEcc-CCEEEEEEEEEEEe-cCCCccccC
Confidence 00000 000011245567789999999999999643 47777777653221 222111111
Q ss_pred ccceEEEcCEEEEcCCCCCc
Q 006539 267 QRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (641)
....++.+|.||.|.|..+.
T Consensus 382 g~~~~i~~D~VI~A~G~~p~ 401 (471)
T PRK12810 382 GSEFVLPADLVLLAMGFTGP 401 (471)
T ss_pred CceEEEECCEEEECcCcCCC
Confidence 11367999999999996653
No 413
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.40 E-value=0.00016 Score=83.08 Aligned_cols=41 Identities=41% Similarity=0.568 Sum_probs=37.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~ 152 (641)
...+|+|||||++||++|+.|++. |++|+|+|++..+||..
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~------g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSM------GFKVVVLEGRARPGGRV 277 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC------CCcEEEEeccccCCCcc
Confidence 357899999999999999999998 99999999999888764
No 414
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=97.39 E-value=0.00015 Score=70.47 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=45.2
Q ss_pred cCCCCcc-----cccCCCCCCccccccCC--eeEEEecCCCC-c--eeEEEecCCCccCCCccccCCCC--CeeEECCC
Q 006539 565 RDPKIPE-----LVNLPEYAGPESRYCPA--RVYEYVPDEKN-Q--LKLQINAQNCLHCKACDIKDPKQ--NIKWTVPE 631 (641)
Q Consensus 565 ~~~~~~~-----~~~~~~~~~~~~~~CP~--~~~~~~~~~~~-~--~~~~~~~~~C~~C~~C~~~cp~~--~i~w~~p~ 631 (641)
.|.+.|. .|. .|.++||. .++++...... + ...+||++.|++||.|..+||++ ||+...-+
T Consensus 128 id~~~C~~~~g~~C~------~C~~~CP~~~~AI~~~~~~~~~~~~~~p~Vd~~~C~gCG~C~~~CP~~~~AI~v~~~~ 200 (213)
T TIGR00397 128 VGHETCLNYKGLNCS------ICVRVCPIRGEAISLKPIENERGRLQIPTVDSAKCTGCGTCEKHCVLSEAAIRVLPRE 200 (213)
T ss_pred ECCCCcccCCCCCcc------cchhhCCCCcceEEEecccccCCcccceEEecccCCCcchhhHhCCCCCCeEEEeehH
Confidence 3667787 665 69999998 68887542211 1 24689999999999999999987 77765543
No 415
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.39 E-value=0.00096 Score=73.37 Aligned_cols=110 Identities=27% Similarity=0.280 Sum_probs=71.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCC-cEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~-~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (641)
-.|+|||||..|+-+|..|++. |. +|++++++....
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~------G~~~Vtlv~~~~~~~------------------------------------- 310 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRL------GAESVTIVYRRGREE------------------------------------- 310 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCCeEEEeeecCccc-------------------------------------
Confidence 4799999999999999999998 88 899999764210
Q ss_pred EEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCcc---ccccCCCcc
Q 006539 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDM---GIAKDGSKK 263 (641)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~---g~~~~g~~~ 263 (641)
++. .. . ..+.+++.||++++++.++++..++ +.+.+|++... ..+.+|...
T Consensus 311 ----------~~~----------~~-~----~~~~~~~~GV~i~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~~g~~~ 364 (457)
T PRK11749 311 ----------MPA----------SE-E----EVEHAKEEGVEFEWLAAPVEILGDE-GRVTGVEFVRMELGEPDASGRRR 364 (457)
T ss_pred ----------CCC----------CH-H----HHHHHHHCCCEEEecCCcEEEEecC-CceEEEEEEEEEecCcCCCCCcc
Confidence 000 00 1 2345677899999999999987655 33344544321 011222211
Q ss_pred c-ccccceEEEcCEEEEcCCCCCc
Q 006539 264 E-NFQRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 264 ~-~~~~g~~i~a~~vV~A~G~~s~ 286 (641)
. .-..+.++.+|.||.|.|..+.
T Consensus 365 ~~~~g~~~~i~~D~vi~a~G~~p~ 388 (457)
T PRK11749 365 VPIEGSEFTLPADLVIKAIGQTPN 388 (457)
T ss_pred cCCCCceEEEECCEEEECccCCCC
Confidence 0 0012467999999999997653
No 416
>PRK02106 choline dehydrogenase; Validated
Probab=97.36 E-value=0.00018 Score=81.29 Aligned_cols=61 Identities=16% Similarity=0.276 Sum_probs=44.8
Q ss_pred HcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHHHcCCC
Q 006539 224 ELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (641)
Q Consensus 224 ~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~ 298 (641)
+.+++|+.++.|++|+.++ +++++|++.+. ++. -..+.++.||+|.|+..+ -+|+...|+-
T Consensus 213 ~~nl~i~~~a~V~rI~~~~-~~a~GV~~~~~----~~~-------~~~~~ak~VILaaGai~T--P~LLl~SGIG 273 (560)
T PRK02106 213 RPNLTIVTHALTDRILFEG-KRAVGVEYERG----GGR-------ETARARREVILSAGAINS--PQLLQLSGIG 273 (560)
T ss_pred CCCcEEEcCCEEEEEEEeC-CeEEEEEEEeC----CcE-------EEEEeeeeEEEccCCCCC--HHHHhhcCCC
Confidence 4569999999999999985 67889988651 121 145689999999998764 4454455665
No 417
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.32 E-value=8.8e-05 Score=84.85 Aligned_cols=54 Identities=26% Similarity=0.570 Sum_probs=45.6
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEE
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 628 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~ 628 (641)
++..|..|. +.+|..+||.+++.+.++ .+.+|.+.|++|+.|..+||+++|++.
T Consensus 52 ~~~~C~~C~----~~~C~~~CP~~ai~~~~~-----~v~~d~~~C~gC~~C~~~CP~~ai~~~ 105 (639)
T PRK12809 52 NPVACHHCN----NAPCVTACPVNALTFQSD-----SVQLDEQKCIGCKRCAIACPFGVVEMV 105 (639)
T ss_pred cCCCCcCcC----ChhHHhhCCcCceecccc-----ceecChhhCcchhhHhhhcCCCCEEcc
Confidence 467788876 568999999999987533 588999999999999999999999875
No 418
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=97.30 E-value=5.9e-05 Score=80.25 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=43.5
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEe--cCCCCc-------eeEEEecCCCccCCCccccCCCCCeeEE
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYV--PDEKNQ-------LKLQINAQNCLHCKACDIKDPKQNIKWT 628 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~--~~~~~~-------~~~~~~~~~C~~C~~C~~~cp~~~i~w~ 628 (641)
|.+.|+.|. .|+++||.+++... ....+. ....+|.+.|+.||.|..+||++||.+.
T Consensus 5 d~~kCi~Cg------~Cv~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~Ai~~~ 70 (374)
T TIGR02512 5 DMSKCIGCG------RCVRACTNVQIVGALGFLNRGGKTEVAPKFGRLLDESNCIGCGQCSLVCPVGAITEK 70 (374)
T ss_pred chhhCCcCh------HhhhhCCHhhccccccccccCCccccccccccccCcccCcCccCHHHhCCCChhhhh
Confidence 778899986 79999999987621 111111 1245889999999999999999999865
No 419
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=97.30 E-value=0.00016 Score=78.50 Aligned_cols=59 Identities=15% Similarity=0.153 Sum_probs=46.0
Q ss_pred CCCCcccccCCCCCCccccccCCe---eEEEecCCCCceeEEEecCCCccCCCccccCCC-CCeeEECCCC
Q 006539 566 DPKIPELVNLPEYAGPESRYCPAR---VYEYVPDEKNQLKLQINAQNCLHCKACDIKDPK-QNIKWTVPEG 632 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~---~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~-~~i~w~~p~g 632 (641)
|.+.|..|. .|..+||.+ ++.+.++ +.....++.+.|+.||.|..+||+ +||++..-.-
T Consensus 340 ~~~~C~~C~------~C~~~Cp~~~~~ai~~~~~--~~~~~~i~~~~C~~Cg~C~~~CP~~~Ai~~~~~~~ 402 (420)
T PRK08318 340 DQDKCIGCG------RCYIACEDTSHQAIEWDED--GTRTPEVIEEECVGCNLCAHVCPVEGCITMGEVKF 402 (420)
T ss_pred CHHHCCCCC------cccccCCCcchhheeeccC--CCceEEechhhCcccchHHhhCCCCCCEEEeccCC
Confidence 678899886 799999974 5555332 223578999999999999999999 9998766443
No 420
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=97.28 E-value=0.00013 Score=72.84 Aligned_cols=69 Identities=17% Similarity=0.280 Sum_probs=49.5
Q ss_pred cCCCCcc-----cccCCCCCCccccccCC--eeEEEecCCC---Cc---eeEEEecCCCccCCCccccCCCC--CeeEEC
Q 006539 565 RDPKIPE-----LVNLPEYAGPESRYCPA--RVYEYVPDEK---NQ---LKLQINAQNCLHCKACDIKDPKQ--NIKWTV 629 (641)
Q Consensus 565 ~~~~~~~-----~~~~~~~~~~~~~~CP~--~~~~~~~~~~---~~---~~~~~~~~~C~~C~~C~~~cp~~--~i~w~~ 629 (641)
.|.+.|. .|. .|..+||. ++++++...+ +. ....||.+.|++||.|..+||++ ||+-.+
T Consensus 134 id~~~Ci~~~~~~C~------~C~~~CP~~~~AI~~~~~~~~r~g~~~~~~p~Id~d~C~gCG~C~~aCP~~~~AI~v~p 207 (254)
T PRK09476 134 VDQENCLNFQGLRCD------VCYRVCPLIDKAITLELERNERTGKHAFFLPTVHSDACTGCGKCEKACVLEKAAIKVLP 207 (254)
T ss_pred cchhhccccCCCchH------HHhhhCCCccCeEEEEcccccccccccccceEEeHHHCcCcChhhHhcCCCcceEEEeh
Confidence 5778888 565 69999996 7888764311 11 13679999999999999999998 888543
Q ss_pred ---CCCCCCCCcC
Q 006539 630 ---PEGGGGPGYS 639 (641)
Q Consensus 630 ---p~gg~g~~~~ 639 (641)
-.|-.|=.|+
T Consensus 208 ~~~~~g~~g~~~~ 220 (254)
T PRK09476 208 RSLAKGKLGHHYR 220 (254)
T ss_pred hhhhccccccCcc
Confidence 2344454443
No 421
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=97.28 E-value=0.0002 Score=69.60 Aligned_cols=61 Identities=18% Similarity=0.342 Sum_probs=45.6
Q ss_pred CCCcccccCCCCCCccccccCCeeEEEecCC----CCceeEEEecCCCc-----cCCCccccCCC--CCeeEECCC
Q 006539 567 PKIPELVNLPEYAGPESRYCPARVYEYVPDE----KNQLKLQINAQNCL-----HCKACDIKDPK--QNIKWTVPE 631 (641)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~----~~~~~~~~~~~~C~-----~C~~C~~~cp~--~~i~w~~p~ 631 (641)
...|..|. +-+|+.+||.++++....+ ..+..++||.+.|+ +|+.|..+||+ +||++.+..
T Consensus 90 ~~~C~~C~----d~~Cv~~CP~~Ai~~~~~~~~~~~~g~av~id~~~C~~~~g~~C~~C~~~CP~~~~AI~~~~~~ 161 (213)
T TIGR00397 90 EVPCRMCK----DIPCARACPTGALDPLLTDIRKADMGVAVLVGHETCLNYKGLNCSICVRVCPIRGEAISLKPIE 161 (213)
T ss_pred CCcCCCCC----CchHHhHcCHhhhchhhhccccccCceEEEECCCCcccCCCCCcccchhhCCCCcceEEEeccc
Confidence 35677764 4479999999998753211 12234679999999 99999999999 799987654
No 422
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.27 E-value=0.0071 Score=64.93 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=35.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~ 152 (641)
.++-|||+|+|+|+||..|-|.+ .-||-+|.|+|+....||..
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa--~~pg~nIhIlE~~~~~GGsl 45 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDA--KMPGENIHILEELDVPGGSL 45 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccC--CCCccceEEEeCCCCCCCcc
Confidence 45789999999999999998863 23688999999998877643
No 423
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.27 E-value=0.00013 Score=87.74 Aligned_cols=59 Identities=19% Similarity=0.294 Sum_probs=44.8
Q ss_pred cCCCCcccccCCCCCCccccccCCeeEEEec---CC------------------CC-ceeEEEecCCCccCCCccccCCC
Q 006539 565 RDPKIPELVNLPEYAGPESRYCPARVYEYVP---DE------------------KN-QLKLQINAQNCLHCKACDIKDPK 622 (641)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~---~~------------------~~-~~~~~~~~~~C~~C~~C~~~cp~ 622 (641)
.+.+.|+.|. .|+.+||.+++.... .+ .+ ...++++.+.|++||.|..+||.
T Consensus 680 ~~~~~Ci~Cg------~C~~vCP~~ai~~~~~~~~~~~~ap~~~~~~~~~~~~~~~~~~~i~i~~~~C~gCg~Cv~~CP~ 753 (1165)
T TIGR02176 680 WVPDNCIQCN------QCAFVCPHAAIRPKLADEEELENAPAGFKSLDAKGKELEGMKFRIQISPLDCTGCGNCVDICPA 753 (1165)
T ss_pred eccccCCCcc------chHHhcChhhccccccchhhhhcCcccchhhhhhcccccccceeEEeccccCcCccchhhhcCC
Confidence 3678899986 799999999887520 00 00 12368999999999999999999
Q ss_pred C--CeeEEC
Q 006539 623 Q--NIKWTV 629 (641)
Q Consensus 623 ~--~i~w~~ 629 (641)
+ ||.+..
T Consensus 754 ~~~Al~m~~ 762 (1165)
T TIGR02176 754 KEKALVMQP 762 (1165)
T ss_pred CCccccccc
Confidence 5 887663
No 424
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.22 E-value=0.00086 Score=68.55 Aligned_cols=40 Identities=33% Similarity=0.312 Sum_probs=34.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCc
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~ 151 (641)
..|.|||+||||+.+|..|.++ .++++|.|+||.+.+.|-
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~----~~~~~Vdi~Ek~PvPFGL 60 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKR----HPNAHVDIFEKLPVPFGL 60 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhc----CCCCeeEeeecCCcccce
Confidence 3699999999999999998874 348999999999988764
No 425
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.22 E-value=0.0019 Score=75.54 Aligned_cols=111 Identities=21% Similarity=0.277 Sum_probs=74.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCc-EEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~-V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (641)
-.|+|||||..|+-+|..|.+. |.+ |+|++++....
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~------Ga~~Vtlv~r~~~~~------------------------------------- 607 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRL------GAERVTIVYRRSEEE------------------------------------- 607 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHc------CCCeEEEeeecCccc-------------------------------------
Confidence 4699999999999999999998 987 99999764210
Q ss_pred EEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccc---cccCCCcc
Q 006539 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMG---IAKDGSKK 263 (641)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g---~~~~g~~~ 263 (641)
++. .... .+.+++.||++++++.++++..+++|++.+|.+..+. .+.+|...
T Consensus 608 ----------~~~----------~~~e-----~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~ 662 (752)
T PRK12778 608 ----------MPA----------RLEE-----VKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRR 662 (752)
T ss_pred ----------CCC----------CHHH-----HHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCC
Confidence 000 0011 1345678999999999999987766777777764221 11233211
Q ss_pred ccc--ccceEEEcCEEEEcCCCCCc
Q 006539 264 ENF--QRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 264 ~~~--~~g~~i~a~~vV~A~G~~s~ 286 (641)
... ....++.+|.||.|.|..+.
T Consensus 663 ~~~~~g~~~~i~~D~Vi~A~G~~p~ 687 (752)
T PRK12778 663 PVAIPGSTFTVDVDLVIVSVGVSPN 687 (752)
T ss_pred ceecCCCeEEEECCEEEECcCCCCC
Confidence 111 11247999999999996643
No 426
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.20 E-value=0.0023 Score=70.40 Aligned_cols=111 Identities=23% Similarity=0.284 Sum_probs=74.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCC-cEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCcc
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~-~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (641)
.-.|+|||+|..|+-+|..+.+. |. +|+|++++....-
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~------Ga~~Vtvv~r~~~~~~----------------------------------- 320 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRL------GAASVTCAYRRDEANM----------------------------------- 320 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc------CCCeEEEEEecCcccC-----------------------------------
Confidence 35799999999999999999988 86 6999998753210
Q ss_pred EEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCcc---ccccCCCc
Q 006539 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDM---GIAKDGSK 262 (641)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~---g~~~~g~~ 262 (641)
+. ... ..+.+++.||++++++.++++..++++++.+|++... ..+.+|..
T Consensus 321 ------------~~----------~~~-----e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~ 373 (467)
T TIGR01318 321 ------------PG----------SRR-----EVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRR 373 (467)
T ss_pred ------------CC----------CHH-----HHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCc
Confidence 00 001 1234567899999999999997765577766665321 11233321
Q ss_pred cccc--ccceEEEcCEEEEcCCCCC
Q 006539 263 KENF--QRGVELRGRITLLAEGCRG 285 (641)
Q Consensus 263 ~~~~--~~g~~i~a~~vV~A~G~~s 285 (641)
.... ....++.+|.||.|.|..+
T Consensus 374 ~~~~~~g~~~~i~~D~Vi~a~G~~p 398 (467)
T TIGR01318 374 RPVPVAGSEFVLPADVVIMAFGFQP 398 (467)
T ss_pred cceecCCceEEEECCEEEECCcCCC
Confidence 1111 1135799999999999665
No 427
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=97.19 E-value=0.00016 Score=73.15 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=43.5
Q ss_pred CCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEECC
Q 006539 567 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 630 (641)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~p 630 (641)
.+.|..|. .|...||.+++.+.++ .....+...|..|+.|...||.+||+++.-
T Consensus 168 ~~~C~~C~------~C~~~CP~~vi~~~~~----~~~v~~~~~C~~C~~Ci~~CP~~AI~i~~~ 221 (263)
T PRK00783 168 SEDCDECE------KCVEACPRGVLELKEG----KLVVTDLLNCSLCKLCERACPGKAIRVSDD 221 (263)
T ss_pred cccCCchH------HHHHhCCccccEecCC----eEEEeChhhCCCchHHHHhCCCCceEEEEc
Confidence 35677765 6999999999998543 244568899999999999999999987653
No 428
>PRK13795 hypothetical protein; Provisional
Probab=97.17 E-value=0.00018 Score=81.58 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=45.2
Q ss_pred ecCCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCee
Q 006539 564 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 626 (641)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~ 626 (641)
+.+.+.|..|. .|+..||.+++.+.++ ...+.+|.+.|++||.|..+||.++|.
T Consensus 577 v~~~~~C~~Cg------~C~~~CP~~ai~~~~~---~~~~~id~~~C~~Cg~C~~aCP~~a~~ 630 (636)
T PRK13795 577 LRRAAECVGCG------VCVGACPTGAIRIEEG---KRKISVDEEKCIHCGKCTEVCPVVKYK 630 (636)
T ss_pred EEccccCCCHh------HHHHhCCcccEEeecC---CceEEechhhcCChhHHHhhcCCCeeE
Confidence 44678898885 7999999999887543 225889999999999999999999985
No 429
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=97.15 E-value=0.00011 Score=72.14 Aligned_cols=51 Identities=20% Similarity=0.417 Sum_probs=43.4
Q ss_pred cCCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCee
Q 006539 565 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 626 (641)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~ 626 (641)
.|.+.|..|. .|+..||.+++++.++ +..+|.+.|..|+.|..+||++.|.
T Consensus 171 id~~~C~~C~------~C~~aCP~~ai~~~~~-----~~~i~~~~C~~C~~C~~~CP~~~~~ 221 (228)
T TIGR03294 171 VNQGLCMGCG------TCAAACPTRAIEMEDG-----RPNVNRDRCIKCGACYVQCPRAFWP 221 (228)
T ss_pred EChhhCcChh------HHHHhCCHhhEEEeCC-----cEEEChhhccCHHHHHHHcCCCCcc
Confidence 3678898885 7999999999987643 4678999999999999999998874
No 430
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=97.15 E-value=0.00012 Score=73.21 Aligned_cols=45 Identities=22% Similarity=0.484 Sum_probs=40.5
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCC
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDP 621 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp 621 (641)
|++.|..|. .|+.+||.+++++... .+.++++.|+.||.|..+||
T Consensus 170 ~~E~c~gc~------~cv~~C~~gAI~~~~~-----~l~id~~~Ci~Cg~Ci~~Cp 214 (317)
T COG2221 170 DEELCRGCG------KCVKVCPTGAITWDGK-----KLKIDGSKCIGCGKCIRACP 214 (317)
T ss_pred CHHHhchhH------hHHHhCCCCceeeccc-----eEEEehhhccCccHHhhhCC
Confidence 668888875 7999999999998753 79999999999999999999
No 431
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=97.11 E-value=0.00022 Score=71.85 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=44.5
Q ss_pred CCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEECCCC
Q 006539 568 KIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVPEG 632 (641)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~p~g 632 (641)
+.|..|. .|+..||.+++.+.++ ....+|.+.|..|+.|...||.+||+.+...+
T Consensus 169 ~~C~~C~------~C~~~CP~~vi~~d~~----~~~v~~~~~C~~C~~C~~~Cp~~AI~~~~~~~ 223 (259)
T cd07030 169 EDCDGCG------KCVEECPRGVLELEEG----KVVVEDLEDCSLCKLCERACDAGAIRVGWDED 223 (259)
T ss_pred hhCCChH------HHHHhCCccceEccCC----eeEEeChhhCcCchHHHHhCCCCcEEEEecCC
Confidence 5676664 7999999999998543 24667899999999999999999999776443
No 432
>PRK10194 ferredoxin-type protein; Provisional
Probab=97.11 E-value=0.00015 Score=67.70 Aligned_cols=57 Identities=11% Similarity=0.181 Sum_probs=39.9
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCC-----ccCCCccccCCCCCeeEEC
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNC-----LHCKACDIKDPKQNIKWTV 629 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C-----~~C~~C~~~cp~~~i~w~~ 629 (641)
+.+.|..|. .|+.+||.++++......- ....++.++| +.|+.|..+||++||.+..
T Consensus 64 ~~~~C~~C~------~C~~~CP~~ai~~~~~~~~-~~~~~~~~~C~~~~~~~C~~C~~~CP~~Ai~~~~ 125 (163)
T PRK10194 64 KNNECSFCY------ACAQACPESLFSPRHTRAW-DLQFTIGDACLAYQSVECRRCQDSCEPMAIIFRP 125 (163)
T ss_pred cCCCCCCch------hhHhhCcchheeccccccc-ceeeeecccCCCccCCCcCcchhhCCHhHeEeee
Confidence 456676664 7899999988775432111 1334566777 6899999999999998874
No 433
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=97.08 E-value=0.00037 Score=69.65 Aligned_cols=58 Identities=21% Similarity=0.403 Sum_probs=44.2
Q ss_pred CCcccccCCCCCCccccccCCeeEEEecCC----CCceeEEEecCCCc-----cCCCccccCCC--CCeeEEC
Q 006539 568 KIPELVNLPEYAGPESRYCPARVYEYVPDE----KNQLKLQINAQNCL-----HCKACDIKDPK--QNIKWTV 629 (641)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~----~~~~~~~~~~~~C~-----~C~~C~~~cp~--~~i~w~~ 629 (641)
..|..|. +.+|+.+||.+++++...+ ..+..+.||.+.|+ +|+.|..+||+ +||+|.+
T Consensus 97 ~~C~~C~----~~~Cv~aCPtgAL~~~~~~~~~~~~g~av~id~~~Ci~~~~~~C~~C~~~CP~~~~AI~~~~ 165 (254)
T PRK09476 97 IPCEMCE----DIPCVKACPSGALDRELVDIDDARMGLAVLVDQENCLNFQGLRCDVCYRVCPLIDKAITLEL 165 (254)
T ss_pred CcCcCCC----CCchhhccCccceEeecccccccccCceeecchhhccccCCCchHHHhhhCCCccCeEEEEc
Confidence 4576664 4479999999999875321 11224559999999 89999999997 8999886
No 434
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.07 E-value=0.0061 Score=65.60 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcC
Q 006539 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAE 281 (641)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~ 281 (641)
.++|.+.+.+.+.=.|..+..++.+.++..+++|++.+|... |++++|+.||+..
T Consensus 231 ~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~----------------ge~v~~k~vI~dp 285 (438)
T PF00996_consen 231 LGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSE----------------GEVVKAKKVIGDP 285 (438)
T ss_dssp TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEET----------------TEEEEESEEEEEG
T ss_pred CccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecC----------------CEEEEcCEEEECC
Confidence 368888888877778999999999999999877888888763 5899999999643
No 435
>PRK13984 putative oxidoreductase; Provisional
Probab=97.04 E-value=0.00029 Score=80.33 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=46.3
Q ss_pred cCCCCcccccCCCCCCccccccCCeeEEEecCCC-----C--ceeEEEecCCCccCCCccccCCCCCeeEE
Q 006539 565 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEK-----N--QLKLQINAQNCLHCKACDIKDPKQNIKWT 628 (641)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~-----~--~~~~~~~~~~C~~C~~C~~~cp~~~i~w~ 628 (641)
.|.+.|+.|. .|+.+||.+++.+.+..+ + .....+|...|..|+.|...||++||+|+
T Consensus 42 ~d~~~Ci~C~------~C~~~Cp~~ai~~~~~~~~~~~~g~~~~~~~i~~~~c~~c~~c~~~Cp~~Ai~~~ 106 (604)
T PRK13984 42 NDWEKCIGCG------TCSKICPTDAITMVEVPDLPQEYGKKPQRPVIDYGRCSFCALCVDICTTGSLKMT 106 (604)
T ss_pred cChhhCcCcc------chhhhCCccceEeeccccccccccccccccccCcccCcCcchHHhhCCcCcEEec
Confidence 3778999986 799999999887653210 1 11468899999999999999999999985
No 436
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.04 E-value=0.0007 Score=71.40 Aligned_cols=41 Identities=39% Similarity=0.562 Sum_probs=35.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~ 152 (641)
...|||||||.|||+||.+|-+. .+.+|+|+|..+.+||.+
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~-----gf~~~~IlEa~dRIGGRI 61 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLEN-----GFIDVLILEASDRIGGRI 61 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHh-----CCceEEEEEeccccCceE
Confidence 34799999999999999999966 167899999999998875
No 437
>PRK09898 hypothetical protein; Provisional
Probab=97.01 E-value=0.00032 Score=68.20 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=43.0
Q ss_pred cCCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEECC
Q 006539 565 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 630 (641)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~p 630 (641)
.|.+.|+.|. .|+.+||.+++.+.+. ..+.+.|..||.|..+||++||.+..-
T Consensus 151 vd~~~CigC~------~C~~aCP~~ai~~~~~-------~~~~~kC~~Cg~Cv~~CP~~Ai~~~~~ 203 (208)
T PRK09898 151 VDHKRCIGCS------ACTTACPWMMATVNTE-------SKKSSKCVLCGECANACPTGALKIIEW 203 (208)
T ss_pred eccccCCCcC------cccccCCCCCCEecCC-------CCcCCcCcChHHHHHhCCcccEEEecH
Confidence 4778898886 6999999999887532 124789999999999999999997743
No 438
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.00 E-value=0.01 Score=62.73 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=52.9
Q ss_pred eHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCc---
Q 006539 210 SLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS--- 286 (641)
Q Consensus 210 ~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~--- 286 (641)
.-..+.+.|...+++.||+|++++.|++| ++ +. ..|.+.. .+..++||.||+|+|..|.
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~-~~-~~v~~~~--------------~~~~~~a~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG-GT-LRFETPD--------------GQSTIEADAVVLALGGASWSQL 145 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC-Cc-EEEEECC--------------CceEEecCEEEEcCCCcccccc
Confidence 35788899999999999999999999998 22 22 3566543 1246899999999998652
Q ss_pred ----hhHHHHHHcCCCc
Q 006539 287 ----LSEKLIKNFKLRE 299 (641)
Q Consensus 287 ----vr~~l~~~~~~~~ 299 (641)
-.-.+++++|...
T Consensus 146 Gs~g~gy~la~~lGh~i 162 (376)
T TIGR03862 146 GSDGAWQQVLDQRGVSV 162 (376)
T ss_pred CCCcHHHHHHHHCCCcc
Confidence 1235566667664
No 439
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=96.98 E-value=0.00033 Score=69.45 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=39.5
Q ss_pred cCCCCcccccCCCCCCccccccCC--eeEEEecCCCC-ceeEE-------EecCCCccCCCccccCCCCCeeEE
Q 006539 565 RDPKIPELVNLPEYAGPESRYCPA--RVYEYVPDEKN-QLKLQ-------INAQNCLHCKACDIKDPKQNIKWT 628 (641)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~CP~--~~~~~~~~~~~-~~~~~-------~~~~~C~~C~~C~~~cp~~~i~w~ 628 (641)
.|++.|+.|. .|+++||. +...+.....+ ...+. ++...|++||.|..+||++||.+.
T Consensus 143 ~d~~kCi~Cg------~Cv~aC~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~C~~Cg~Cv~vCP~gAL~~~ 210 (234)
T PRK07569 143 IDHNRCVLCT------RCVRVCDEIEGAHTWDVAGRGAKSRVITDLNQPWGTSETCTSCGKCVQACPTGAIFRK 210 (234)
T ss_pred eehhhCcCcc------HHHHHHHHhcCCceeeecccCCcceEeecCCccccccccccchHHHHHhCCCCcEEec
Confidence 3789999986 79999994 33332211111 11222 235689999999999999999864
No 440
>PLN02976 amine oxidase
Probab=96.94 E-value=0.00088 Score=79.97 Aligned_cols=41 Identities=39% Similarity=0.680 Sum_probs=37.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCcc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~ 152 (641)
..+||+|||||++|+++|+.|++. |++|+|||++..+||.+
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~------G~~V~VlEa~~~vGGri 732 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQ------GFSVTVLEARSRIGGRV 732 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHC------CCcEEEEeeccCCCCce
Confidence 458999999999999999999998 99999999998887754
No 441
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.94 E-value=0.0085 Score=72.05 Aligned_cols=104 Identities=19% Similarity=0.286 Sum_probs=75.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCC-cEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~-~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (641)
-.|+|||+|+.|+.+|..|++. |. .|+|+|..+.+.
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~------G~~vV~vv~~~~~~~------------------------------------- 354 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAA------GIAVVAIIDARADVS------------------------------------- 354 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCceEEEEccCcchh-------------------------------------
Confidence 4699999999999999999998 85 578998754210
Q ss_pred EEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccccc
Q 006539 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (641)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~ 266 (641)
..+.+.+++.||+++.++.++++..+ +.+.+|++.. .+|+
T Consensus 355 -----------------------------~~l~~~L~~~GV~i~~~~~v~~i~g~--~~v~~V~l~~----~~g~----- 394 (985)
T TIGR01372 355 -----------------------------PEARAEARELGIEVLTGHVVAATEGG--KRVSGVAVAR----NGGA----- 394 (985)
T ss_pred -----------------------------HHHHHHHHHcCCEEEcCCeEEEEecC--CcEEEEEEEe----cCCc-----
Confidence 01345567889999999999888643 3455666542 1121
Q ss_pred ccceEEEcCEEEEcCCCCCchhHHHHHHcCCC
Q 006539 267 QRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (641)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~vr~~l~~~~~~~ 298 (641)
+.++.+|.|+++.|..+. .++....+..
T Consensus 395 --~~~i~~D~V~va~G~~Pn--t~L~~~lg~~ 422 (985)
T TIGR01372 395 --GQRLEADALAVSGGWTPV--VHLFSQRGGK 422 (985)
T ss_pred --eEEEECCEEEEcCCcCch--hHHHHhcCCC
Confidence 478999999999999986 3565555543
No 442
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.93 E-value=0.0039 Score=64.96 Aligned_cols=103 Identities=23% Similarity=0.398 Sum_probs=67.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhc--------CCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeee
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREK--------NVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRV 179 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~--------~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~ 179 (641)
-.+|||||||.|...|..|+....+. ...++|+++|..+.+ ++.+.
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i------------------L~mFd-------- 272 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI------------------LNMFD-------- 272 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH------------------HHHHH--------
Confidence 46999999999999999987642211 124567777765421 11111
Q ss_pred eccCccEEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccC
Q 006539 180 PVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (641)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~ 259 (641)
..+.++-.++..+.|+++..++.|.++.... +.+.. ++
T Consensus 273 --------------------------------krl~~yae~~f~~~~I~~~~~t~Vk~V~~~~------I~~~~----~~ 310 (491)
T KOG2495|consen 273 --------------------------------KRLVEYAENQFVRDGIDLDTGTMVKKVTEKT------IHAKT----KD 310 (491)
T ss_pred --------------------------------HHHHHHHHHHhhhccceeecccEEEeecCcE------EEEEc----CC
Confidence 2444555555677899999999998875332 33332 23
Q ss_pred CCcccccccceEEEcCEEEEcCCCCC
Q 006539 260 GSKKENFQRGVELRGRITLLAEGCRG 285 (641)
Q Consensus 260 g~~~~~~~~g~~i~a~~vV~A~G~~s 285 (641)
|+. ++|..-.+|.|+|..+
T Consensus 311 g~~-------~~iPYG~lVWatG~~~ 329 (491)
T KOG2495|consen 311 GEI-------EEIPYGLLVWATGNGP 329 (491)
T ss_pred Cce-------eeecceEEEecCCCCC
Confidence 443 6788999999999865
No 443
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=96.93 E-value=0.0087 Score=67.53 Aligned_cols=66 Identities=17% Similarity=0.262 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCch
Q 006539 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~v 287 (641)
...+.+.|.+.+++.||+|+.++.++++..+ +|+|+||...+ .++|+. ..+.|+.||+|||..+.+
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~---~~~g~~-------~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLME-DGECRGVIAYC---LETGEI-------HRFRAKAVVLATGGYGRI 183 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEee-CCEEEEEEEEE---cCCCcE-------EEEEeCeEEECCCCcccc
Confidence 3578889999999999999999999999976 48898987633 123332 578999999999998753
No 444
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.93 E-value=0.0062 Score=68.61 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCC
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~ 147 (641)
-.|+|||||+.|+.+|..|++. |.+|+++++.+.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~------g~~Vtli~~~~~ 177 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRY------ASKVTVIVREPD 177 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHcc------CCEEEEEEeCCc
Confidence 4799999999999999999998 999999998753
No 445
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=96.91 E-value=0.00062 Score=66.94 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=43.4
Q ss_pred cCCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCC----------CccccCCCCCeeEECCC
Q 006539 565 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCK----------ACDIKDPKQNIKWTVPE 631 (641)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~----------~C~~~cp~~~i~w~~p~ 631 (641)
.|.+.|..|. .|+.+||.+++.+.+. ..+.+.|..|+ .|..+||++||+|...+
T Consensus 122 id~~~C~~C~------~C~~aCP~~A~~~~~~-------~~~~~kC~~C~~~~~~~g~~P~Cv~~Cp~~Ai~f~~~~ 185 (225)
T TIGR03149 122 VHKDLCVGCQ------YCIAACPYRVRFIHPV-------TKSADKCNFCRDTNLAEGKLPACVESCPTKALTFGDLN 185 (225)
T ss_pred echhhCCcch------HHHHhCCCCCcEecCC-------CCccccCCCCCcchhhCCCCCcccccCccCCEEEeccc
Confidence 3778898886 7999999999876432 12468999998 89999999999987544
No 446
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.91 E-value=0.00072 Score=75.61 Aligned_cols=37 Identities=51% Similarity=0.701 Sum_probs=33.8
Q ss_pred ccccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCC
Q 006539 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (641)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~ 146 (641)
..++||+||||+|.+|.++|..|+.. |++|+|+|++.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~------g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDA------GLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCC------CCeEEEEeCCC
Confidence 34689999999999999999999976 99999999985
No 447
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=96.87 E-value=0.00053 Score=68.36 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=31.5
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCC
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~ 146 (641)
..++.|+|||||.+|+++|..+.+.+ +.-+|.|+|-..
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl----~~g~vgIvep~e 74 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKL----GSGSVGIVEPAE 74 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhc----CCCceEEecchh
Confidence 34789999999999999999999873 345799999665
No 448
>PRK07118 ferredoxin; Validated
Probab=96.87 E-value=0.00036 Score=70.72 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=42.2
Q ss_pred CcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEE
Q 006539 569 IPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWT 628 (641)
Q Consensus 569 ~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~ 628 (641)
.|+.|. .|+.+||.+++.+.+. ...+|.+.|+.|+.|..+||.++|++.
T Consensus 140 ~CigCg------~C~~aCp~~AI~~~~g-----~~~id~~~C~~Cg~Cv~aCP~~ai~~~ 188 (280)
T PRK07118 140 GCLGLG------SCVAACPFDAIHIENG-----LPVVDEDKCTGCGACVKACPRNVIELI 188 (280)
T ss_pred CCcChh------HHHHhCCccCeEccCC-----eEEEChhhCcChhHHHHhcCccceeee
Confidence 466654 7999999999987542 688999999999999999999999987
No 449
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=96.86 E-value=0.00018 Score=56.28 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=36.5
Q ss_pred cccccCCCCCCccccccCCeeEEEecC------------CCCceeEEEecCCCc------cCCCccccCCCC
Q 006539 570 PELVNLPEYAGPESRYCPARVYEYVPD------------EKNQLKLQINAQNCL------HCKACDIKDPKQ 623 (641)
Q Consensus 570 ~~~~~~~~~~~~~~~~CP~~~~~~~~~------------~~~~~~~~~~~~~C~------~C~~C~~~cp~~ 623 (641)
|..|. .|+.+||+++++...+ ..+.+.+.++.+.|. .||.|..+||+.
T Consensus 2 C~~C~------~C~~~CP~~AI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~C~~C~~vCP~N 67 (67)
T PF13484_consen 2 CITCG------KCAEACPTGAISGEDEPTWEPKGCWSYNNPGVKKWRIDWEKCVSYWDCYGCGICQKVCPFN 67 (67)
T ss_pred Ccchh------HHHHhCcHhhccCCCcCeeecCcchhccCccccCccchHHhhhcCCCccccchhhccCCCC
Confidence 56664 7999999999987511 023346788888898 999999999963
No 450
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.82 E-value=0.0086 Score=71.82 Aligned_cols=112 Identities=23% Similarity=0.329 Sum_probs=74.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCc-EEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCcc
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~-V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (641)
.-+|+|||||..|+-+|..+.++ |.+ |+++.++....
T Consensus 571 Gk~VvVIGgG~tA~D~A~~a~rl------Ga~~Vtiv~rr~~~e------------------------------------ 608 (1006)
T PRK12775 571 GKSVVVIGAGNTAMDCLRVAKRL------GAPTVRCVYRRSEAE------------------------------------ 608 (1006)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeecCccc------------------------------------
Confidence 35799999999999999999998 885 67777553210
Q ss_pred EEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccc---cccCCCc
Q 006539 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMG---IAKDGSK 262 (641)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g---~~~~g~~ 262 (641)
++. .... .+.+++.||++++++.++++..+++|++.+|++..+- .+.+|..
T Consensus 609 -----------m~a----------~~~e-----~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~ 662 (1006)
T PRK12775 609 -----------APA----------RIEE-----IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRR 662 (1006)
T ss_pred -----------CCC----------CHHH-----HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCc
Confidence 000 0001 2345678999999999999987666888787765321 1123322
Q ss_pred ccccc-cceEEEcCEEEEcCCCCCc
Q 006539 263 KENFQ-RGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 263 ~~~~~-~g~~i~a~~vV~A~G~~s~ 286 (641)
..... ...++.+|.||.|.|..+.
T Consensus 663 ~~~~~g~~~~i~~D~Vi~AiG~~p~ 687 (1006)
T PRK12775 663 KPMPTGEFKDLECDTVIYALGTKAN 687 (1006)
T ss_pred cccCCCceEEEEcCEEEECCCcCCC
Confidence 11111 1247999999999998875
No 451
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=96.80 E-value=0.00078 Score=36.99 Aligned_cols=17 Identities=29% Similarity=0.716 Sum_probs=14.1
Q ss_pred cCCCccCCCccccCCCC
Q 006539 607 AQNCLHCKACDIKDPKQ 623 (641)
Q Consensus 607 ~~~C~~C~~C~~~cp~~ 623 (641)
.++|++|+.|..+||++
T Consensus 1 ~~~C~~C~~C~~~Cp~~ 17 (17)
T PF12800_consen 1 QERCIGCGSCVDVCPTQ 17 (17)
T ss_dssp -CCCTTSSSSTTTSTT-
T ss_pred CCcCCCCchHHhhccCC
Confidence 36899999999999974
No 452
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.78 E-value=0.014 Score=61.41 Aligned_cols=143 Identities=15% Similarity=0.177 Sum_probs=72.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCc---cccccccChHHHHHhhhhhhhcCCCeeeecc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH---IISGNVFEPRALNELLPQWKQEEAPIRVPVS 182 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~---~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~ 182 (641)
....|+|||||.++...+..|.+. .+..+|.++=|+...-.. ...-..+.|..++.+...-..
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~----~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~---------- 254 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRR----GPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDE---------- 254 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-----TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HH----------
T ss_pred CCCeEEEECCcHhHHHHHHHHHhC----CCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHH----------
Confidence 456799999999999999999997 223589999887743211 111234555544332110000
Q ss_pred CccEEEeecCccccCCCCCCCCCcEEeeHH---HHHHHHHHH-HHH-cCCEEecCceEEEEEEcCCCcEEEEEeCccccc
Q 006539 183 SDKFWFLTKDRAFSLPSPFSNRGNYVISLS---QLVRWLGGK-AEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIA 257 (641)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~l~~~L~~~-a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~ 257 (641)
....++...... + .-.++.. .|.+.|+++ +.. ..++|+.++.|+++..+++|.+ .+.+.+.
T Consensus 255 -~R~~~l~~~~~~-------n--y~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~-~l~~~~~--- 320 (341)
T PF13434_consen 255 -ERRELLREQRHT-------N--YGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGV-RLTLRHR--- 320 (341)
T ss_dssp -HHHHHHHHTGGG-------T--SSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSE-EEEEEET---
T ss_pred -HHHHHHHHhHhh-------c--CCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEE-EEEEEEC---
Confidence 000000000000 0 1123332 233333332 222 2389999999999999886544 4555541
Q ss_pred cCCCcccccccceEEEcCEEEEcCCC
Q 006539 258 KDGSKKENFQRGVELRGRITLLAEGC 283 (641)
Q Consensus 258 ~~g~~~~~~~~g~~i~a~~vV~A~G~ 283 (641)
..|+ ..++.+|.||.|||-
T Consensus 321 ~~~~-------~~~~~~D~VilATGy 339 (341)
T PF13434_consen 321 QTGE-------EETLEVDAVILATGY 339 (341)
T ss_dssp TT---------EEEEEESEEEE---E
T ss_pred CCCC-------eEEEecCEEEEcCCc
Confidence 1222 378899999999994
No 453
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.77 E-value=0.0099 Score=70.66 Aligned_cols=111 Identities=20% Similarity=0.211 Sum_probs=72.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-+|+|||||..|+-+|..+.+. |.+|+++.++.... |
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~------Ga~Vtlv~rr~~~~--------------------m----------------- 484 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRL------GGNVTIVYRRTKSE--------------------M----------------- 484 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCEEEEEEecCccc--------------------c-----------------
Confidence 4799999999999999999999 99999998764210 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCC-CcEEEEEeCccc---cccCCCcc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDAD-NKVIGIGTNDMG---IAKDGSKK 263 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~-g~v~~V~~~~~g---~~~~g~~~ 263 (641)
|. ....+ +.+.+.||++++++.++++..+++ +.+.+|.+..+- .+.+|...
T Consensus 485 ----------pa----------~~~e~-----~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~ 539 (944)
T PRK12779 485 ----------PA----------RVEEL-----HHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRS 539 (944)
T ss_pred ----------cc----------cHHHH-----HHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCcee
Confidence 00 01122 224567999999999999876533 356666543211 11233211
Q ss_pred ccc-ccceEEEcCEEEEcCCCCCc
Q 006539 264 ENF-QRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 264 ~~~-~~g~~i~a~~vV~A~G~~s~ 286 (641)
... ....++.+|.||+|.|..+.
T Consensus 540 ~~~~G~e~~i~aD~VI~AiG~~p~ 563 (944)
T PRK12779 540 PKPTGEIERVPVDLVIMALGNTAN 563 (944)
T ss_pred eecCCceEEEECCEEEEcCCcCCC
Confidence 111 11257999999999998875
No 454
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=96.76 E-value=0.00045 Score=72.58 Aligned_cols=56 Identities=11% Similarity=0.158 Sum_probs=41.8
Q ss_pred ecCCCCcccccCCCCCCccccccCCeeEEEecCCCCc-------eeEEEecCCCccCCCccccCCCCCe
Q 006539 564 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQ-------LKLQINAQNCLHCKACDIKDPKQNI 625 (641)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~-------~~~~~~~~~C~~C~~C~~~cp~~~i 625 (641)
+.+.+.|..|. .|..+||.+++.+.++.... ....+|...|+.||.|..+||..++
T Consensus 8 vi~~~~C~gCg------~C~~~CP~~aI~~~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~C~~vCP~~~~ 70 (341)
T PRK09326 8 VIEYDVCTACG------ACEAVCPIGAITVDKKAEIRDPNDLELYEKGAAPNVCEGCLTCSRICPVVDG 70 (341)
T ss_pred EECcccCcChH------HHHHhCCHhhhecccCcccccccchhhhccCCCcCcCcCcCchhhhCCCCcc
Confidence 45788999886 79999999999886432100 0113578899999999999998664
No 455
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.73 E-value=0.0011 Score=74.36 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCchhHHHHH
Q 006539 214 LVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIK 293 (641)
Q Consensus 214 l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~~ 293 (641)
...+|.....+.|++|+.++.|++|..++ +++++|++.+. |.. ...+.+|.||+|.|+..+ .+|+.
T Consensus 196 ~~~~l~~a~~r~nl~i~~~~~V~rI~~~~-~ra~GV~~~~~-----~~~------~~~~~ak~VIlaAGai~S--P~LLl 261 (532)
T TIGR01810 196 ARAYLHPAMKRPNLEVQTRAFVTKINFEG-NRATGVEFKKG-----GRK------EHTEANKEVILSAGAINS--PQLLQ 261 (532)
T ss_pred HHHHhhhhccCCCeEEEeCCEEEEEEecC-CeEEEEEEEeC-----CcE------EEEEEeeeEEEccCCCCC--HHHHH
Confidence 33344333235679999999999999875 67889987641 110 134589999999998543 45555
Q ss_pred HcCCC
Q 006539 294 NFKLR 298 (641)
Q Consensus 294 ~~~~~ 298 (641)
..|+-
T Consensus 262 ~SGIG 266 (532)
T TIGR01810 262 LSGIG 266 (532)
T ss_pred hcCCC
Confidence 55655
No 456
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=96.55 E-value=0.00044 Score=63.06 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=53.1
Q ss_pred ccccCCCCCcEEecCCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEEC
Q 006539 552 TNHEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 629 (641)
Q Consensus 552 ~~~~~~~~~hl~~~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~ 629 (641)
..|.+.|+.-+-+.|.+.|+.|. .|...||..++.--++ . --.+..+.|.+|+.|...||++.|+...
T Consensus 99 ~~~~~~~~~~va~i~e~~ciGCt------kCiqaCpvdAivg~~~--~--mhtv~~dlCTGC~lCva~CPtdci~m~~ 166 (198)
T COG2878 99 SEHGEEQARMVALIDEANCIGCT------KCIQACPVDAIVGATK--A--MHTVIADLCTGCDLCVAPCPTDCIEMQP 166 (198)
T ss_pred hhhhccccceeeEecchhccccH------HHHHhCChhhhhccch--h--HHHHHHHHhcCCCcccCCCCCCceeeee
Confidence 34555666767778999999996 5999999998874322 1 2367789999999999999999998654
No 457
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.54 E-value=0.014 Score=64.60 Aligned_cols=124 Identities=19% Similarity=0.166 Sum_probs=70.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCC-CcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVD-LSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G-~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (641)
-.|+|||||..|+-+|..+.++ | .+|+++|..+....... ..+.++.|.
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~------ga~~V~vv~~~~~~~~~~~---------~~~~~~~~~--------------- 333 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRH------GAASVHQFEIMPKPPEARA---------KDNPWPEWP--------------- 333 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEEecCCChhhcc---------cccCCCccc---------------
Confidence 4699999999999998887777 6 47999987654321000 000000000
Q ss_pred EEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEE-ecCceEEEEEEcCCCcEEEEEeCcc--ccccCCCcc
Q 006539 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEI-YPGFAASEILYDADNKVIGIGTNDM--GIAKDGSKK 263 (641)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i-~~g~~v~~i~~~~~g~v~~V~~~~~--g~~~~g~~~ 263 (641)
...++...+.+..+..|+++ ++++.+.++.-++++++.+|.+..+ ..+++|...
T Consensus 334 -----------------------~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~ 390 (485)
T TIGR01317 334 -----------------------RVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQ 390 (485)
T ss_pred -----------------------hhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCcc
Confidence 01122223334344467654 5688888887655567777765322 112345421
Q ss_pred cccc--cceEEEcCEEEEcCCCC
Q 006539 264 ENFQ--RGVELRGRITLLAEGCR 284 (641)
Q Consensus 264 ~~~~--~g~~i~a~~vV~A~G~~ 284 (641)
.... ...++.+|.||.|.|..
T Consensus 391 p~~~~g~~~~i~~D~Vi~AiG~~ 413 (485)
T TIGR01317 391 FVEIPGSEEVFEADLVLLAMGFV 413 (485)
T ss_pred ceecCCceEEEECCEEEEccCcC
Confidence 1111 12479999999999954
No 458
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=96.54 E-value=0.001 Score=70.59 Aligned_cols=42 Identities=24% Similarity=0.567 Sum_probs=36.1
Q ss_pred CccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCee
Q 006539 580 GPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 626 (641)
Q Consensus 580 ~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~ 626 (641)
+.|+..||.+|++++++ +++.||.++|+.|+.|..+||. |++
T Consensus 248 ~~~v~~Cp~~ai~~~~~----~~~~id~~~C~~Cm~Ci~~~p~-a~~ 289 (402)
T TIGR02064 248 NEVVNRCPTKAISWDGS----KELSIDNRECVRCMHCINKMPK-ALH 289 (402)
T ss_pred hhHhhcCCccccccCCC----ceEEEcchhcCcCccccccCcc-ccc
Confidence 46899999999999632 2799999999999999999997 654
No 459
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=96.52 E-value=0.0012 Score=62.82 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=44.8
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEecCCC----C--c--eeEEEecCCCccCC------CccccCCCCCeeEECC
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYVPDEK----N--Q--LKLQINAQNCLHCK------ACDIKDPKQNIKWTVP 630 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~----~--~--~~~~~~~~~C~~C~------~C~~~cp~~~i~w~~p 630 (641)
+.+.|..|. .|+.+||.+++++..... + . ....++.+.|..|+ +|..+||++||++..+
T Consensus 85 ~~~~C~~C~------~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~kC~~C~~~~~~paCv~~CP~~Al~~~~~ 157 (181)
T PRK10330 85 MQERCIGCK------TCVVACPYGAMEVVVRPVIRNSGAGLNVRAEKAEANKCDLCNHREDGPACMAACPTHALICVDR 157 (181)
T ss_pred ChhhCCCcc------hhhhhCCccCeEeeccccccccccccccccCCceeeeCcCCCCCCCCccchhhCchhhEEEeCH
Confidence 678898886 699999999998753210 0 0 01256678999998 9999999999998754
No 460
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.45 E-value=0.013 Score=62.26 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=37.0
Q ss_pred HHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCC
Q 006539 222 AEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (641)
Q Consensus 222 a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~ 284 (641)
.++.|+++++++.|+.+...+. .|.+.+ |++++.+.+|+|||+.
T Consensus 137 Yke~gIe~~~~t~v~~~D~~~K----~l~~~~---------------Ge~~kys~LilATGs~ 180 (478)
T KOG1336|consen 137 YKEKGIELILGTSVVKADLASK----TLVLGN---------------GETLKYSKLIIATGSS 180 (478)
T ss_pred HhhcCceEEEcceeEEeecccc----EEEeCC---------------CceeecceEEEeecCc
Confidence 3678999999999999988763 466665 7999999999999983
No 461
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=96.44 E-value=0.0009 Score=67.59 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=43.8
Q ss_pred EEecCCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccC---------CCccccCCCCCeeE
Q 006539 562 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHC---------KACDIKDPKQNIKW 627 (641)
Q Consensus 562 l~~~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C---------~~C~~~cp~~~i~w 627 (641)
+.+.|.+.|..|. .|+.+||.+++.+... ..+.+.|..| .+|..+||++|+.+
T Consensus 156 iV~ID~ekCiGCg------~Cv~ACPygAi~~n~~-------~~~~eKC~~C~~Rie~G~~PaCv~aCP~~A~~f 217 (321)
T TIGR03478 156 IVLVDQERCKGYR------YCVEACPYKKVYFNPQ-------SQKSEKCIGCYPRIEKGIAPACVKQCPGRIRFV 217 (321)
T ss_pred eEEECHHHCcchH------HHHHhCCCCCcEecCC-------CCchhhCCCchhhhccCCCCHHHhhcCcccEEE
Confidence 4445888999986 7999999999997643 1357899999 89999999999876
No 462
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.41 E-value=0.01 Score=61.40 Aligned_cols=68 Identities=24% Similarity=0.319 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCchhHHHH
Q 006539 213 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLI 292 (641)
Q Consensus 213 ~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~vr~~l~ 292 (641)
-|.+|-.+..++.||+++.+..|.++.....+ + .+.+.| |.+++.|+||.|.|..+. ..|+
T Consensus 394 yls~wt~ekir~~GV~V~pna~v~sv~~~~~n-l-~lkL~d---------------G~~l~tD~vVvavG~ePN--~ela 454 (659)
T KOG1346|consen 394 YLSQWTIEKIRKGGVDVRPNAKVESVRKCCKN-L-VLKLSD---------------GSELRTDLVVVAVGEEPN--SELA 454 (659)
T ss_pred HHHHHHHHHHHhcCceeccchhhhhhhhhccc-e-EEEecC---------------CCeeeeeeEEEEecCCCc--hhhc
Confidence 45666778888899999999999888776633 3 467776 899999999999999885 4666
Q ss_pred HHcCCCc
Q 006539 293 KNFKLRE 299 (641)
Q Consensus 293 ~~~~~~~ 299 (641)
+..++..
T Consensus 455 ~~sgLei 461 (659)
T KOG1346|consen 455 EASGLEI 461 (659)
T ss_pred cccccee
Confidence 6666553
No 463
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=96.37 E-value=0.0011 Score=55.77 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=35.3
Q ss_pred EEecCCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccC---------CCccccCCCCCeeEE
Q 006539 562 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHC---------KACDIKDPKQNIKWT 628 (641)
Q Consensus 562 l~~~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C---------~~C~~~cp~~~i~w~ 628 (641)
+.+.|.+.|+.|. .|+..||.+++.+.++.. . ...|--| .+|..+||++||++.
T Consensus 34 ~V~id~~~CigC~------~C~~aCP~~ai~~~~~~~----~---~~KCdlC~~r~~~G~~PaCv~~Cp~~Al~~g 96 (98)
T PF13247_consen 34 IVVIDEDKCIGCG------YCVEACPYGAIRFDPDTG----K---ARKCDLCIDRIEEGEEPACVEACPTGALTFG 96 (98)
T ss_dssp -EEE-TTTCCTHH------HHHHH-TTS-EEEETTTT----C---EEE--TTHHHHTTT-S-HHHHH-TTS-EEEE
T ss_pred eEEechhhccCch------hhhhhhccCcceeecccc----c---CCcCceehhhhhcCCCChhHHhccccceEEe
Confidence 4455889999996 799999999999976422 1 3457777 899999999999873
No 464
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=96.37 E-value=0.0024 Score=64.10 Aligned_cols=48 Identities=17% Similarity=0.347 Sum_probs=34.6
Q ss_pred ccccccCCeeEEEecCCCCceeEEEe-cCCCccCCCccccCCCCCeeEE
Q 006539 581 PESRYCPARVYEYVPDEKNQLKLQIN-AQNCLHCKACDIKDPKQNIKWT 628 (641)
Q Consensus 581 ~~~~~CP~~~~~~~~~~~~~~~~~~~-~~~C~~C~~C~~~cp~~~i~w~ 628 (641)
-|.++||.+++...-......++..+ .+.|.+|+.|..+||.+++...
T Consensus 173 ~C~~~CP~Ga~~~~~~~~~~~~i~~~~~~~C~~C~~C~~vCP~~~vl~~ 221 (255)
T TIGR02163 173 WCGHLCPLGAFYGLIGRKSLIKIAASDREKCTNCMDCFNVCPEPQVLRM 221 (255)
T ss_pred hhhCcCCCcchhhhhhccCceEEEeeccccCeEcCCccCcCCCCceeec
Confidence 68889999977432111222356655 8999999999999999886543
No 465
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.37 E-value=0.00079 Score=35.61 Aligned_cols=15 Identities=33% Similarity=0.645 Sum_probs=13.7
Q ss_pred CccCCCccccCCCCC
Q 006539 610 CLHCKACDIKDPKQN 624 (641)
Q Consensus 610 C~~C~~C~~~cp~~~ 624 (641)
|.+|+.|..+||++|
T Consensus 1 C~~C~~C~~~Cp~~A 15 (15)
T PF12798_consen 1 CTGCGACVEVCPTGA 15 (15)
T ss_pred CCCchHHHHHhcCCC
Confidence 889999999999886
No 466
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=96.31 E-value=0.0014 Score=65.10 Aligned_cols=52 Identities=17% Similarity=0.084 Sum_probs=42.5
Q ss_pred ecCCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCC---------CccccCCCCCeeEE
Q 006539 564 LRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCK---------ACDIKDPKQNIKWT 628 (641)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~---------~C~~~cp~~~i~w~ 628 (641)
+.|.+.|+.|. .|+..||.+++.+.++ ..+.+.|..|+ +|..+||++||.+.
T Consensus 126 ~id~~~CigC~------~Cv~aCP~~Ai~~~~~-------~~~~~KC~~C~~r~~~G~~PaCv~~CP~~Al~~g 186 (244)
T PRK14993 126 VVDNKRCVGCA------YCVQACPYDARFINHE-------TQTADKCTFCVHRLEAGLLPACVESCVGGARIIG 186 (244)
T ss_pred EEcHHHCCCHH------HHHHhcCCCCCEEeCC-------CCCcccCcCCcchhhCCCCcccchhcccCCEEEc
Confidence 44778899886 6999999999998643 12468999998 99999999999753
No 467
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.27 E-value=0.016 Score=58.38 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=31.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCC
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV 148 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~ 148 (641)
.-|.|||||.||..||+.++++ |++|.++|-++.-
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~------Gv~V~L~EMRp~k 38 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKR------GVPVILYEMRPVK 38 (439)
T ss_pred CceEEEcccccccHHHHHHHHc------CCcEEEEEccccc
Confidence 4589999999999999999999 9999999988753
No 468
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=96.27 E-value=0.0014 Score=67.61 Aligned_cols=52 Identities=17% Similarity=0.212 Sum_probs=41.5
Q ss_pred cCCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCC-------------ccccCCCCCeeE
Q 006539 565 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKA-------------CDIKDPKQNIKW 627 (641)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~-------------C~~~cp~~~i~w 627 (641)
.|.+.|+.|. .|+..||.+++.+..+. .......|.-|+. |..+||++||.+
T Consensus 140 id~dkCigCg------~Cv~aCP~gai~~~~~~-----~~~~~~KC~~C~~~~~~R~~~G~~PACv~aCP~gAi~f 204 (328)
T PRK10882 140 YDKDVCTGCR------YCMVACPFNVPKYDYNN-----PFGAIHKCELCNQKGVERLDKGGLPGCVEVCPTGAVIF 204 (328)
T ss_pred CCHHHcCccc------HHHHhCCccceeccccc-----cccceeecccccccchhhhhcCCCChhhhhccccceEe
Confidence 3778899886 79999999999875431 2233578999999 999999999986
No 469
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=96.23 E-value=0.0025 Score=59.37 Aligned_cols=53 Identities=19% Similarity=0.190 Sum_probs=42.7
Q ss_pred cCCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCC---------CccccCCCCCeeEECC
Q 006539 565 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCK---------ACDIKDPKQNIKWTVP 630 (641)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~---------~C~~~cp~~~i~w~~p 630 (641)
.+.+.|..|. .|+..||.+++.+..+ . ...+.|..|+ .|..+||++||+|...
T Consensus 92 i~~~~C~~C~------~C~~aCP~~ai~~~~~-~------~~~~kC~~C~~r~~~g~~p~Cv~~Cp~~Ai~~~~~ 153 (161)
T TIGR02951 92 VDQDKCIGCR------YCVWACPYGAPQYDPQ-Q------GVMGKCDGCYDRVEKGLRPACVDACPMRALDFGPI 153 (161)
T ss_pred ECHHhCCCch------HHHhhCCCCCcEEcCC-C------CccccCCCCHHHHHCCCCCcchhhccccceEEecH
Confidence 3678888885 6999999999987643 1 1357999997 9999999999999753
No 470
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=96.21 E-value=0.0021 Score=70.77 Aligned_cols=64 Identities=19% Similarity=0.316 Sum_probs=44.0
Q ss_pred CCCCcEEecCCCCcccccCCCCCCccccccC----CeeEEEecCCCC-----ceeEEEecCCCccCCCccccCCCCCee
Q 006539 557 DQPAHLRLRDPKIPELVNLPEYAGPESRYCP----ARVYEYVPDEKN-----QLKLQINAQNCLHCKACDIKDPKQNIK 626 (641)
Q Consensus 557 ~~~~hl~~~~~~~~~~~~~~~~~~~~~~~CP----~~~~~~~~~~~~-----~~~~~~~~~~C~~C~~C~~~cp~~~i~ 626 (641)
|+-....+-|++.|+.|. .|+++|= +.++.++.+... ....-||..-|+.||.|..+||++|+.
T Consensus 138 Des~Pfy~ydp~qCIlCg------RCVeaCqevqv~eaL~i~w~~~~pRV~wd~~~~i~~SSCVsCG~CvtVCP~nALm 210 (978)
T COG3383 138 DESNPFYIYDPNQCILCG------RCVEACQEVQVNEALTIDWRGEDPRVIWDNDVPINESSCVSCGACVTVCPVNALM 210 (978)
T ss_pred ccCCCeEEecchheeehh------HHHHHHHhhhceeEEEeecccCCcceecCCCCccccccccccCccceecchhhhh
Confidence 433335566999999997 7999997 234444321110 012456778899999999999999975
No 471
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=96.18 E-value=0.0019 Score=70.43 Aligned_cols=50 Identities=26% Similarity=0.301 Sum_probs=39.8
Q ss_pred CCCCcccccCCCCCCcccc--ccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCee
Q 006539 566 DPKIPELVNLPEYAGPESR--YCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 626 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~--~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~ 626 (641)
|+++|..|. .|.+ -||+= ++.++ + ++..||..-|++||.|..+||..+|.
T Consensus 575 d~~~CtGC~------~C~~~~~Cpsi--~~~~~-~--~k~~id~~~C~GCg~C~~iCP~~a~~ 626 (640)
T COG4231 575 DEEKCTGCG------DCIVLSGCPSI--EPDPT-F--KKARIDPSSCNGCGSCVEVCPSFAIK 626 (640)
T ss_pred chhhcCCcH------HHHhhcCCceE--eecCC-C--CceeecccccccchhhhhcCchhhee
Confidence 788999986 5775 79953 33332 1 37999999999999999999999986
No 472
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.18 E-value=0.017 Score=64.06 Aligned_cols=32 Identities=41% Similarity=0.590 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCC
Q 006539 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (641)
Q Consensus 109 DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~ 146 (641)
.|+|||+|++|+++|..|+++ |.+|+++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~------G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLEL------GARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 599999999999999999998 99999999764
No 473
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.17 E-value=0.0042 Score=68.34 Aligned_cols=39 Identities=36% Similarity=0.582 Sum_probs=35.0
Q ss_pred cccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCC
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV 148 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~ 148 (641)
..+||.||||||.||.++|-.|++. |.++|+|+|++...
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn-----~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSEN-----PNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccC-----CCceEEEEecCCCC
Confidence 3579999999999999999999995 68999999998764
No 474
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=96.12 E-value=0.004 Score=47.08 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=15.3
Q ss_pred EEecCCCccCCCccccCCCCCeeE
Q 006539 604 QINAQNCLHCKACDIKDPKQNIKW 627 (641)
Q Consensus 604 ~~~~~~C~~C~~C~~~cp~~~i~w 627 (641)
+||.+.|++||.|..+||.++|..
T Consensus 2 ~Id~~~Ci~Cg~C~~~Cp~~~~~~ 25 (59)
T PF14697_consen 2 VIDEDKCIGCGKCVRACPDGAIDA 25 (59)
T ss_dssp EE-TTT----SCCCHHCCCCS-S-
T ss_pred EECcccccChhhHHhHcCccceee
Confidence 689999999999999999877653
No 475
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.048 Score=56.21 Aligned_cols=95 Identities=26% Similarity=0.341 Sum_probs=72.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
.||+|||||-+.+-.|+.|++. +-+|+++-|++.+..
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~------a~~Vtlv~r~~~~ra------------------------------------- 180 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKI------AKKVTLVHRRDEFRA------------------------------------- 180 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHh------cCeEEEEecCcccCc-------------------------------------
Confidence 4899999999999999999999 889999998875432
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~ 266 (641)
..++.+.+.+. ++++++++.+.++.-++ +.+|++.+. + |+
T Consensus 181 ---------------------------~~~~~~~l~~~~~i~~~~~~~i~ei~G~~---v~~v~l~~~---~-~~----- 221 (305)
T COG0492 181 ---------------------------EEILVERLKKNVKIEVLTNTVVKEILGDD---VEGVVLKNV---K-GE----- 221 (305)
T ss_pred ---------------------------CHHHHHHHHhcCCeEEEeCCceeEEecCc---cceEEEEec---C-Cc-----
Confidence 22345555555 79999999999887554 556777651 1 22
Q ss_pred ccceEEEcCEEEEcCCCCCc
Q 006539 267 QRGVELRGRITLLAEGCRGS 286 (641)
Q Consensus 267 ~~g~~i~a~~vV~A~G~~s~ 286 (641)
...+..+-|+++-|..+.
T Consensus 222 --~~~~~~~gvf~~iG~~p~ 239 (305)
T COG0492 222 --EKELPVDGVFIAIGHLPN 239 (305)
T ss_pred --eEEEEeceEEEecCCCCc
Confidence 257888999999997765
No 476
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=96.08 E-value=0.0027 Score=73.40 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=38.5
Q ss_pred ecCCCCcccccCCCCCCccccccCC----eeEEEecCCCCc--------------------eeEEE-----ecCCCccCC
Q 006539 564 LRDPKIPELVNLPEYAGPESRYCPA----RVYEYVPDEKNQ--------------------LKLQI-----NAQNCLHCK 614 (641)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~CP~----~~~~~~~~~~~~--------------------~~~~~-----~~~~C~~C~ 614 (641)
..|++.|+.|. .|+++||. +++.+....... ..-.| +...|+.||
T Consensus 137 ~~D~~rCI~C~------RCVr~C~ev~g~~al~~~~RG~~~~~~~~~~~~~~da~~~~~~~~~~~i~~~~~~~~~C~~CG 210 (819)
T PRK08493 137 NYDPSLCIVCE------RCVTVCKDKIGESALKTVPRGLDAPDKSFKESMPKDAYAVWSKKQKSLIGPVGGETLDCSFCG 210 (819)
T ss_pred Eechhhccccc------HHHhhCcccccchhhhhccCCcccccccccccccccchhhhhhcccceecccCCCcccccccC
Confidence 34899999997 79999994 233332211000 00111 246899999
Q ss_pred CccccCCCCCeeE
Q 006539 615 ACDIKDPKQNIKW 627 (641)
Q Consensus 615 ~C~~~cp~~~i~w 627 (641)
.|..+||++||.-
T Consensus 211 ~Cv~VCPvGAL~~ 223 (819)
T PRK08493 211 ECIAVCPVGALSS 223 (819)
T ss_pred cHHHhCCCCcccc
Confidence 9999999999963
No 477
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=96.03 E-value=0.0015 Score=66.36 Aligned_cols=47 Identities=19% Similarity=0.430 Sum_probs=34.1
Q ss_pred CccccccCCeeEEEecCCCCceeEE-EecCCCccCCCccccCCCCCee
Q 006539 580 GPESRYCPARVYEYVPDEKNQLKLQ-INAQNCLHCKACDIKDPKQNIK 626 (641)
Q Consensus 580 ~~~~~~CP~~~~~~~~~~~~~~~~~-~~~~~C~~C~~C~~~cp~~~i~ 626 (641)
.-|.++||.+++.-.-...+..++. +|.+.|++|+.|..+||.+++.
T Consensus 179 ~wC~~lCP~Ga~~~~~~~~~~~~i~~~d~~~C~~C~~C~~~CP~~~i~ 226 (271)
T PRK09477 179 GWCGHLCPLGAFYGLIGKKSLIRVKAHDRQKCTRCMDCFHVCPEPQVL 226 (271)
T ss_pred chhhccCCHHHHHHhcccccccccccCCcccCcccCCcCCcCCCccee
Confidence 3688999999664211112222566 8899999999999999988764
No 478
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=96.03 E-value=0.0024 Score=72.43 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=38.3
Q ss_pred EEecCCCCcccccCCCCCCcccc--ccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCe
Q 006539 562 LRLRDPKIPELVNLPEYAGPESR--YCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNI 625 (641)
Q Consensus 562 l~~~~~~~~~~~~~~~~~~~~~~--~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i 625 (641)
+.+ |++.|..|. .|.. .||+.. ..+ + +..+|. .|+.||.|..+||.+||
T Consensus 545 ~~i-d~~~C~~C~------~C~~~~~CP~~~--~~~---~--~~~i~~-~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 545 YKV-DQDKCIGCK------KCIKELGCPAIE--PED---K--EAVIDP-LCTGCGVCAQICPFDAI 595 (595)
T ss_pred EEE-cCCcCCCcc------ccccccCCCCcc--ccC---C--cceeCC-CCcCHHHHHhhCccccC
Confidence 444 778999986 6888 999754 211 1 577888 79999999999999986
No 479
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=96.00 E-value=0.0061 Score=59.40 Aligned_cols=35 Identities=31% Similarity=0.490 Sum_probs=30.1
Q ss_pred EEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCC
Q 006539 110 VVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV 148 (641)
Q Consensus 110 VvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~ 148 (641)
.+|||||+||.++|-.|+++ .|..+|+++-.++.+
T Consensus 2 fivvgggiagvscaeqla~~----~psa~illitass~v 36 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQL----EPSAEILLITASSFV 36 (334)
T ss_pred eEEEcCccccccHHHHHHhh----CCCCcEEEEeccHHH
Confidence 58999999999999999997 567889999876654
No 480
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=95.97 E-value=0.0056 Score=58.19 Aligned_cols=53 Identities=23% Similarity=0.395 Sum_probs=44.7
Q ss_pred EEecCCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccC------C---CccccCCCCCeeE
Q 006539 562 LRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHC------K---ACDIKDPKQNIKW 627 (641)
Q Consensus 562 l~~~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C------~---~C~~~cp~~~i~w 627 (641)
|.+.|.+.|+.|. -|...||.++..+.++ .+ . .+.|..| | +|...||++|+.|
T Consensus 94 iV~vd~d~CIGC~------yCi~ACPyga~~~~~~-~~---~---~~KCt~C~~ri~~g~~PaCV~~CP~~A~~f 155 (203)
T COG0437 94 IVLVDKDLCIGCG------YCIAACPYGAPQFNPD-KG---V---VDKCTFCVDRVAVGKLPACVEACPTGALIF 155 (203)
T ss_pred EEEecCCcccCch------HHHhhCCCCCceeCcc-cC---c---ccccCcchhhHhcCCCCcccccCCcccccc
Confidence 7777999999997 6999999999998653 21 1 6889999 8 9999999999874
No 481
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=95.97 E-value=0.002 Score=73.28 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=36.1
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEe-----cCCCCceeEEEecCCCccCCCccccCCCC
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYV-----PDEKNQLKLQINAQNCLHCKACDIKDPKQ 623 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~-----~~~~~~~~~~~~~~~C~~C~~C~~~cp~~ 623 (641)
+...|+.|. .|+.+||.+++-.. ...+-.....++...|++||.|..+||.+
T Consensus 368 ~e~~CI~CG------~Cv~aCP~~llP~~l~~~~~~~d~~~~~~~~~~~CieCG~C~~vCPs~ 424 (695)
T PRK05035 368 PEQPCIRCG------ACADACPASLLPQQLYWFAKAEEHDKAQEYNLFDCIECGACAYVCPSN 424 (695)
T ss_pred chhhcCCcc------cHHHHCCccchhhhHHHhhhccccchhhhcChhhccccCcccccCCCC
Confidence 457899886 79999999877321 00000011246677899999999999976
No 482
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=95.91 E-value=0.0025 Score=64.46 Aligned_cols=51 Identities=22% Similarity=0.250 Sum_probs=40.4
Q ss_pred cCCCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCC---------CccccCCCCCeeEE
Q 006539 565 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCK---------ACDIKDPKQNIKWT 628 (641)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~---------~C~~~cp~~~i~w~ 628 (641)
.|.+.|+.|. .|+.+||.+++++.+.. + ....|..|. +|..+||++||+|.
T Consensus 121 id~dkCigC~------~Cv~aCP~~a~~~~~~~-~------~~~KC~~C~dr~~~G~~PaCv~aCP~gAi~fg 180 (283)
T TIGR01582 121 FDHSKCIGCG------YCIVGCPFNIPRYDKVD-N------RPYKCTLCIDRVSVGQEPACVKTCPTNAISFG 180 (283)
T ss_pred EeHHHCCcch------HHHhhCCCCCcEEcCCC-C------ChhhhcccccccccCCCChHhCcccHhhEEEC
Confidence 3778899986 69999999999986431 1 135788884 99999999999974
No 483
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=95.80 E-value=0.0047 Score=58.63 Aligned_cols=50 Identities=20% Similarity=0.354 Sum_probs=39.3
Q ss_pred CCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCCCCeeEECC
Q 006539 579 AGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIKWTVP 630 (641)
Q Consensus 579 ~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~p 630 (641)
.++.+..+|...++..+.-.+ +..+|.+.|++|+.|..+||+++|.....
T Consensus 11 ~g~~T~~yP~~~~~~~~~~rg--~p~~d~~~C~~C~~Cv~~CP~~ai~~~~~ 60 (180)
T PRK12387 11 TGTATSSYPLEPIAVDKNFRG--KPEYNPQQCIGCAACVNACPSNALTVETD 60 (180)
T ss_pred cCCccccCCCCCCCCCCCCCC--ceEEChhhCcChhHHHHhcCccCeEeecc
Confidence 357888999887765332112 68999999999999999999999987653
No 484
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.70 E-value=0.033 Score=57.76 Aligned_cols=59 Identities=25% Similarity=0.295 Sum_probs=46.7
Q ss_pred CCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCC
Q 006539 204 RGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 283 (641)
Q Consensus 204 ~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~ 283 (641)
...|.++..+|- .+..-||-+..|..|+.+...+. .|+++| |.+|.+|..++|||+
T Consensus 254 pd~FfvspeDLp-----~~~nGGvAvl~G~kvvkid~~d~----~V~LnD---------------G~~I~YdkcLIATG~ 309 (659)
T KOG1346|consen 254 PDGFFVSPEDLP-----KAVNGGVAVLRGRKVVKIDEEDK----KVILND---------------GTTIGYDKCLIATGV 309 (659)
T ss_pred CCcceeChhHCc-----ccccCceEEEeccceEEeecccC----eEEecC---------------CcEeehhheeeecCc
Confidence 346677777763 33456799999999999987663 377877 899999999999999
Q ss_pred CCc
Q 006539 284 RGS 286 (641)
Q Consensus 284 ~s~ 286 (641)
++.
T Consensus 310 ~Pk 312 (659)
T KOG1346|consen 310 RPK 312 (659)
T ss_pred Ccc
Confidence 986
No 485
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=95.66 E-value=0.0054 Score=63.83 Aligned_cols=41 Identities=27% Similarity=0.513 Sum_probs=33.5
Q ss_pred CccccccCCe-----eEEEecCCCCceeEEEecCCCccCCCccccCCCCCee
Q 006539 580 GPESRYCPAR-----VYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIK 626 (641)
Q Consensus 580 ~~~~~~CP~~-----~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~ 626 (641)
..|-+.||.. |+++..+ -.|..+.|++||.|..+||+.||.
T Consensus 23 ~eck~~cpv~~~gk~ci~V~~~------~~ise~lCigcgicvkkcpf~ai~ 68 (592)
T KOG0063|consen 23 QECKKSCPVVRTGKLCIEVTPT------AFISEELCIGCGICVKKCPFEAIQ 68 (592)
T ss_pred HHHHhcCCcccccceEEEEcCc------chhhHhhhccccceeeccCcceEE
Confidence 4578899963 6776433 667889999999999999999986
No 486
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=95.48 E-value=0.058 Score=58.10 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=35.1
Q ss_pred HHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCCCCCch
Q 006539 223 EELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (641)
Q Consensus 223 ~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G~~s~v 287 (641)
.+.++++..++.|+++..... .|.+.+ | .+..|.+|+|+|++...
T Consensus 64 ~~~~i~~~~~~~v~~id~~~~----~v~~~~---------------g-~~~yd~LvlatGa~~~~ 108 (415)
T COG0446 64 RATGIDVRTGTEVTSIDPENK----VVLLDD---------------G-EIEYDYLVLATGARPRP 108 (415)
T ss_pred HhhCCEEeeCCEEEEecCCCC----EEEECC---------------C-cccccEEEEcCCCcccC
Confidence 456899999999988876552 366655 4 78899999999998753
No 487
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.26 E-value=0.092 Score=61.52 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=45.9
Q ss_pred HHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCcccc---ccCCC------------cccccccceEEEcCEEEEcCCCC
Q 006539 220 GKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGI---AKDGS------------KKENFQRGVELRGRITLLAEGCR 284 (641)
Q Consensus 220 ~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~---~~~g~------------~~~~~~~g~~i~a~~vV~A~G~~ 284 (641)
+.|.+.||++.++..-.++..+++|.+.+|++..+-. +..|. +.....+..++.||.||.|.|..
T Consensus 648 ~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~ 727 (1028)
T PRK06567 648 IYALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIE 727 (1028)
T ss_pred HHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccC
Confidence 4567789999999999999887778888888764321 01111 11122234789999999999965
Q ss_pred C
Q 006539 285 G 285 (641)
Q Consensus 285 s 285 (641)
.
T Consensus 728 ~ 728 (1028)
T PRK06567 728 N 728 (1028)
T ss_pred C
Confidence 4
No 488
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=95.25 E-value=0.0062 Score=64.37 Aligned_cols=56 Identities=18% Similarity=0.424 Sum_probs=40.2
Q ss_pred CCcccccCCCCCCccccccCCeeEE-EecC------------CCCceeEEEecCCCccCCCccccCCCCCeeEEC
Q 006539 568 KIPELVNLPEYAGPESRYCPARVYE-YVPD------------EKNQLKLQINAQNCLHCKACDIKDPKQNIKWTV 629 (641)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~CP~~~~~-~~~~------------~~~~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~ 629 (641)
+.|..|. .|..+||..+-. +..+ ..-.....||...|++||.|..+||..+|+|+-
T Consensus 224 d~CtgCg------~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C~~ac~~~av~~~q 292 (622)
T COG1148 224 DKCTGCG------ACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIECGLCEKACPNEAVDLNQ 292 (622)
T ss_pred ccccccc------cccccCCcccCcccccccccceeeeccchhhcccccccChhhhccchhhhhcCCccccccCC
Confidence 6788885 899999985321 1100 000114678999999999999999999999874
No 489
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=95.18 E-value=0.0084 Score=65.16 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=35.6
Q ss_pred CCCCcccccCCCCCCccccccCCeeEEEe-----cCCCCceeEEEecCCCccCCCccccCCCC
Q 006539 566 DPKIPELVNLPEYAGPESRYCPARVYEYV-----PDEKNQLKLQINAQNCLHCKACDIKDPKQ 623 (641)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~CP~~~~~~~-----~~~~~~~~~~~~~~~C~~C~~C~~~cp~~ 623 (641)
..+.|+.|. .|..+||.+++... ...+-.....++...|++||.|..+||.+
T Consensus 361 ~~~~Ci~Cg------~C~~vCP~~l~p~~l~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~~ 417 (435)
T TIGR01945 361 PEKPCIRCG------KCVQVCPMNLLPQQLNWLALADEFDEAEEHNLMDCIECGCCSYVCPSN 417 (435)
T ss_pred cCCcCcCcc------chhhhCccchhhHHHHHHhhhcccchhhcCCCCcCCcCCCcccccCCC
Confidence 457899886 79999998754210 00000112356778899999999999975
No 490
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.033 Score=56.31 Aligned_cols=106 Identities=19% Similarity=0.200 Sum_probs=76.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccEE
Q 006539 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (641)
Q Consensus 108 ~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 187 (641)
-.-+|||||..+|.+|-.|+-. |+.|+|.=|+-.+.+ +
T Consensus 199 GkTLvVGa~YVaLECAgFL~gf------g~~vtVmVRSI~LrG-------------------F----------------- 236 (503)
T KOG4716|consen 199 GKTLVVGAGYVALECAGFLKGF------GYDVTVMVRSILLRG-------------------F----------------- 236 (503)
T ss_pred CceEEEccceeeeehhhhHhhc------CCCcEEEEEEeeccc-------------------c-----------------
Confidence 3579999999999999999999 999999887654332 0
Q ss_pred EeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccc
Q 006539 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (641)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~ 267 (641)
-.++.+.+.+..++.|+.+...+-...+++.++++. .|...... .++
T Consensus 237 -----------------------Dqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~---t~~------ 283 (503)
T KOG4716|consen 237 -----------------------DQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTN---TGE------ 283 (503)
T ss_pred -----------------------cHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeeccc---ccc------
Confidence 025566677888999999999888888988887764 45444311 111
Q ss_pred cceEEEcCEEEEcCCCCCchhH
Q 006539 268 RGVELRGRITLLAEGCRGSLSE 289 (641)
Q Consensus 268 ~g~~i~a~~vV~A~G~~s~vr~ 289 (641)
+.+-..|.|+.|-|..+.+++
T Consensus 284 -~~~~~ydTVl~AiGR~~~~~~ 304 (503)
T KOG4716|consen 284 -EGEEEYDTVLWAIGRKALTDD 304 (503)
T ss_pred -cccchhhhhhhhhccccchhh
Confidence 233468999999996655443
No 491
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.09 E-value=0.057 Score=54.95 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=74.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCcc
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (641)
..-.++|||||..++..|--++-+ |-++.++=|...+- +.+.
T Consensus 188 ~Pkr~vvvGaGYIavE~Agi~~gL------gsethlfiR~~kvL------------------R~FD-------------- 229 (478)
T KOG0405|consen 188 QPKRVVVVGAGYIAVEFAGIFAGL------GSETHLFIRQEKVL------------------RGFD-------------- 229 (478)
T ss_pred cCceEEEEccceEEEEhhhHHhhc------CCeeEEEEecchhh------------------cchh--------------
Confidence 345799999999999988888888 99998887765321 1111
Q ss_pred EEEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccc
Q 006539 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (641)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~ 265 (641)
..+...+.+..+..|++++.++.++++....+|-...++..
T Consensus 230 --------------------------~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~------------- 270 (478)
T KOG0405|consen 230 --------------------------EMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSH------------- 270 (478)
T ss_pred --------------------------HHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEec-------------
Confidence 13344466777888999999999999998887754333333
Q ss_pred cccceEEEcCEEEEcCCCCCchh
Q 006539 266 FQRGVELRGRITLLAEGCRGSLS 288 (641)
Q Consensus 266 ~~~g~~i~a~~vV~A~G~~s~vr 288 (641)
|.....|.++.|.|..+...
T Consensus 271 ---~~i~~vd~llwAiGR~Pntk 290 (478)
T KOG0405|consen 271 ---GTIEDVDTLLWAIGRKPNTK 290 (478)
T ss_pred ---cccccccEEEEEecCCCCcc
Confidence 34455999999999887643
No 492
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=95.09 E-value=0.009 Score=64.22 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=29.8
Q ss_pred CCCcccccCCCCCCccccccCCeeEEEecCCCCceeEEEecCCCccCCCccccCCC
Q 006539 567 PKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPK 622 (641)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~CP~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~ 622 (641)
.+.|..|. .|+.+||.++ ...+ + ....|+.|+.|..+||.
T Consensus 230 ~~~Ci~C~------~Cv~vCP~gi-~~~~---~------~~~~Ci~Cg~CidaCp~ 269 (434)
T TIGR02745 230 LGDCIDCN------LCVQVCPTGI-DIRD---G------LQLECINCGLCIDACDD 269 (434)
T ss_pred CCCCCChh------hhHHhCCCCC-EeCC---C------CchhChhhhHHHHhCCC
Confidence 45788775 7999999993 3321 1 13579999999999994
No 493
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=95.02 E-value=0.041 Score=60.38 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=30.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCC
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~ 146 (641)
.-.|+|||+|.+|+-.|..|++. +.+|+++.++.
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~------a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKV------AKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHh------CCeEEEEEeec
Confidence 34799999999999999999998 89999998865
No 494
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=95.01 E-value=0.0021 Score=68.55 Aligned_cols=48 Identities=19% Similarity=0.391 Sum_probs=31.1
Q ss_pred CcccccCCCCCCccccccCCeeEE-----EecCCCCceeEEEecCCCccCCCccccCCC
Q 006539 569 IPELVNLPEYAGPESRYCPARVYE-----YVPDEKNQLKLQINAQNCLHCKACDIKDPK 622 (641)
Q Consensus 569 ~~~~~~~~~~~~~~~~~CP~~~~~-----~~~~~~~~~~~~~~~~~C~~C~~C~~~cp~ 622 (641)
.|+.|. .|.++||.+..- +-..++-.+...-+...|+|||.|..+||-
T Consensus 366 sCi~C~------~C~d~CP~~Llp~ql~~~a~~~~~~e~~~~~l~dCIECg~Ca~vCPs 418 (529)
T COG4656 366 SCIRCS------LCADACPVNLLPQQLYWFAKGEQHDEEEEHNLLDCIECGACAYVCPS 418 (529)
T ss_pred ccccHH------HHHHhCccccCHHHhhHHhhhhhhhHHHHHHhhhhhhhCcchhcCCC
Confidence 788886 799999986431 100000001122356789999999999994
No 495
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=94.88 E-value=0.014 Score=49.83 Aligned_cols=29 Identities=14% Similarity=0.387 Sum_probs=26.4
Q ss_pred eEEEecCCCccCCCccccCCCCCeeEECC
Q 006539 602 KLQINAQNCLHCKACDIKDPKQNIKWTVP 630 (641)
Q Consensus 602 ~~~~~~~~C~~C~~C~~~cp~~~i~w~~p 630 (641)
.+.++.+.|++|+.|..+||+++|.+...
T Consensus 10 ~v~id~~~Ci~C~~Cv~aCP~~ai~~~~~ 38 (103)
T PRK09626 10 PVWVDESRCKACDICVSVCPAGVLAMRID 38 (103)
T ss_pred CeEECcccccCCcchhhhcChhhhccccc
Confidence 68889999999999999999999988754
No 496
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=94.88 E-value=0.26 Score=52.99 Aligned_cols=221 Identities=19% Similarity=0.078 Sum_probs=0.0
Q ss_pred CCCcEEeeHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeCccccccCCCcccccccceEEEcCEEEEcCC
Q 006539 203 NRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEG 282 (641)
Q Consensus 203 ~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~~~g~~~~g~~~~~~~~g~~i~a~~vV~A~G 282 (641)
..+.+....+.+...+...+...|.+|+++++|++|..++ +.+ .|.+.+ |.+++||.||.|..
T Consensus 200 ~~~~~~~~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~-~~v-~v~~~~---------------g~~~~ad~VI~a~p 262 (450)
T PF01593_consen 200 PFGGLTVGMGGLSLALALAAEELGGEIRLNTPVTRIERED-GGV-TVTTED---------------GETIEADAVISAVP 262 (450)
T ss_dssp TSSTEEEETTTTHHHHHHHHHHHGGGEESSEEEEEEEEES-SEE-EEEETT---------------SSEEEESEEEE-S-
T ss_pred cccceeecccchhHHHHHHHhhcCceeecCCcceeccccc-ccc-cccccc---------------ceEEecceeeecCc
Q ss_pred CCCchhHHHHH-HcCCCcc----cccCccceeeEEEEEEeecCCCCCCCcEEEEeccCCCCCCcceEEEEEeCCC---eE
Q 006539 283 CRGSLSEKLIK-NFKLREK----SHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDR---QI 354 (641)
Q Consensus 283 ~~s~vr~~l~~-~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~---~~ 354 (641)
...+.. .+....+ .......+.-..+....+.............+.+.-........+......+ ..
T Consensus 263 -----~~~l~~i~~~p~l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (450)
T PF01593_consen 263 -----PSVLKNILLLPPLPEDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGRPGGG 337 (450)
T ss_dssp -----HHHHHTSEEESTSHHHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSCTTSE
T ss_pred -----hhhhhhhhhcccccccccccccccccCcceeEEEeeecccccccccccceecccCccccccccccccCcccccCC
Q ss_pred EEEEEEccCCC--CCCCChHHHHHHHhcCCchhhhcc--------CCceeeeccEEeecCCCccCCcccc----------
Q 006539 355 ALGLVVALNYH--NPFLNPYEEFQKFKHHPAIKPLLE--------GGTVVQYGARTLNEGGLQSIPYPVF---------- 414 (641)
Q Consensus 355 ~ig~~~~~d~~--~~~~~~~~~~~~~~~~p~i~~~l~--------~~~~~~~~~~~i~~~g~~~~~~~~~---------- 414 (641)
.+...+..+.. ....+..+..+.... .+++++. +.....|....++.+.+...+.-..
T Consensus 338 ~l~~~~~~~~~~~~~~~~~e~~~~~~~~--~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (450)
T PF01593_consen 338 VLTSYVGGPDAPEWDDLSDEEILERVLD--DLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTP 415 (450)
T ss_dssp EEEEEEEHHHHHHHTTSCHHHHHHHHHH--HHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSC
T ss_pred cceeeeeccccchhcccchhhhHHHHHH--HhhhccccccccccccccccccccccccccccccccccccccccccccCC
Q ss_pred --CCEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHh
Q 006539 415 --PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGF 450 (641)
Q Consensus 415 --~~v~LiGDAAh~~~P~~g~G~~~Ai~da~~lA~~l~ 450 (641)
+|++++||..+ |....|++.|+.+|..+|+.|.
T Consensus 416 ~~~~l~~aG~~~~---~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 416 IDPGLYFAGDWTS---PGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp BTTTEEE-SGGGS---SSSTTSHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeecccC---CCCCCcHHHHHHHHHHHHHHhC
No 497
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=94.64 E-value=0.0073 Score=60.77 Aligned_cols=27 Identities=26% Similarity=0.625 Sum_probs=25.2
Q ss_pred eEEEecCCCccCCCccccCCCCCeeEE
Q 006539 602 KLQINAQNCLHCKACDIKDPKQNIKWT 628 (641)
Q Consensus 602 ~~~~~~~~C~~C~~C~~~cp~~~i~w~ 628 (641)
+..+|.|.|..||.|..+||++||+|.
T Consensus 166 ~P~~~~E~c~gc~~cv~~C~~gAI~~~ 192 (317)
T COG2221 166 KPKVDEELCRGCGKCVKVCPTGAITWD 192 (317)
T ss_pred cCccCHHHhchhHhHHHhCCCCceeec
Confidence 467899999999999999999999996
No 498
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.62 E-value=0.091 Score=53.49 Aligned_cols=76 Identities=29% Similarity=0.376 Sum_probs=57.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhhchhcCCCCcEEEEcCCCCCCCccccccccChHHHHHhhhhhhhcCCCeeeeccCccE
Q 006539 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (641)
Q Consensus 107 ~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~viEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 186 (641)
..||.|||||-+|..||+-|+-. -..|+|+|=.+.+.
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGi------v~hVtllEF~~eLk------------------------------------- 390 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGI------VEHVTLLEFAPELK------------------------------------- 390 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhh------hheeeeeecchhhh-------------------------------------
Confidence 46899999999999999999977 56799998555332
Q ss_pred EEeecCccccCCCCCCCCCcEEeeHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeCc
Q 006539 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTND 253 (641)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~~ 253 (641)
-.+.|.+++..+ +|+|+.+..-+++.-++ .+|.|+...|
T Consensus 391 ---------------------------AD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg-~kV~Gl~Y~d 430 (520)
T COG3634 391 ---------------------------ADAVLQDKLRSLPNVTIITNAQTTEVKGDG-DKVTGLEYRD 430 (520)
T ss_pred ---------------------------hHHHHHHHHhcCCCcEEEecceeeEEecCC-ceecceEEEe
Confidence 234466666664 69999999888887665 3576777665
No 499
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=94.56 E-value=0.017 Score=42.38 Aligned_cols=21 Identities=29% Similarity=0.697 Sum_probs=8.8
Q ss_pred eEEEecCCCccCCCccccCCC
Q 006539 602 KLQINAQNCLHCKACDIKDPK 622 (641)
Q Consensus 602 ~~~~~~~~C~~C~~C~~~cp~ 622 (641)
++.+|.+.|++||.|..+||.
T Consensus 1 ki~id~~~C~~C~~C~~~CP~ 21 (52)
T PF13237_consen 1 KIVIDEDKCIGCGRCVKVCPA 21 (52)
T ss_dssp -----TT------TTGGG-TT
T ss_pred CCccCcccCcCCcChHHHccc
Confidence 368999999999999999998
No 500
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=94.53 E-value=0.015 Score=48.39 Aligned_cols=27 Identities=15% Similarity=0.399 Sum_probs=25.2
Q ss_pred eEEEecCCCccCCCccccCCCCCeeEE
Q 006539 602 KLQINAQNCLHCKACDIKDPKQNIKWT 628 (641)
Q Consensus 602 ~~~~~~~~C~~C~~C~~~cp~~~i~w~ 628 (641)
.+.+|.+.|++||.|..+||.++|++.
T Consensus 15 ~~~i~~~~Ci~C~~Cv~~CP~~~i~~~ 41 (91)
T TIGR02936 15 VTSIDQEKCIGCGRCYKVCGRDVLTLK 41 (91)
T ss_pred eEEECHhHCCCcchHHHHcChhhceee
Confidence 578999999999999999999999876
Done!