Query 006539
Match_columns 641
No_of_seqs 531 out of 4432
Neff 8.8
Searched_HMMs 29240
Date Tue Mar 26 18:09:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006539.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2168-2172//hhsearch_pdb/006539hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gmh_A Electron transfer flavo 1.0 1 1 703.2 49.6 539 101-641 29-584 (584)
2 3oz2_A Digeranylgeranylglycero 1.0 1 1 276.3 32.0 339 106-484 3-349 (397)
3 3atr_A Conserved archaeal prot 1.0 1 1 248.3 26.9 345 105-485 4-355 (453)
4 3cgv_A Geranylgeranyl reductas 1.0 1 1 244.7 32.9 340 106-485 3-350 (397)
5 3rp8_A Flavoprotein monooxygen 1.0 1 1 239.0 26.6 331 104-486 20-371 (407)
6 3e1t_A Halogenase; flavoprotei 1.0 1 1 238.4 29.0 330 105-470 5-355 (512)
7 3fmw_A Oxygenase; mithramycin, 1.0 1 1 233.3 26.7 334 105-487 47-396 (570)
8 1pn0_A Phenol 2-monooxygenase; 1.0 1 1 231.6 30.5 350 106-485 7-423 (665)
9 3nix_A Flavoprotein/dehydrogen 1.0 1 1 231.3 28.6 326 106-469 4-344 (421)
10 3i3l_A Alkylhalidase CMLS; fla 1.0 1 1 230.0 25.4 327 104-470 20-367 (591)
No 1
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=1.00 E-value=1 Score=703.22 Aligned_cols=539 Identities=57% Similarity=1.041 Sum_probs=468.3
Q ss_pred CCCCCCCCCEEEECCCHHHHHHHHHHHHHCHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 11146643499999888899999999964010389970999757988897101346349587998646545317982431
Q 006539 101 MCRESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVP 180 (641)
Q Consensus 101 ~~~~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~iiEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~ 180 (641)
|+++.+++||+||||||+||++|+.|++...+.++|++|+||||.+.++++..+|+.+.++.+.++++.|.....++...
T Consensus 29 ~~~~~~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~ 108 (584)
T 2gmh_A 29 MERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTP 108 (584)
T ss_dssp CCCCEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEE
T ss_pred CCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 55663388999999579999999999853403389982899927887887450454007788999999998659842003
Q ss_pred CCCCCEEEEECCCCCCCC---C-CCCCCCCEEEEHHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCEEEEEECCCCC
Q ss_conf 157618884067520279---9-777998479608999999999999769899219558899993898299999576643
Q 006539 181 VSSDKFWFLTKDRAFSLP---S-PFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (641)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~ 256 (641)
+..+.+.++.....+.++ . .+.+.+.+.+++..+.++|.+++++.|++|++++.|+++..++++.+++|.+.+.|+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~ 188 (584)
T 2gmh_A 109 VTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGI 188 (584)
T ss_dssp CCEEEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEE
T ss_pred ECHHHEEEECCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCEEEEEECCCCC
T ss_conf 43525355336787325666710102589779749999999999999759999819999999986999789999677554
Q ss_pred CCCCCCCCCCCCCEEEECCEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEECCCC
Q ss_conf 46899655666661997598999279998005999988299732546765323688999951588789995799822579
Q 006539 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPL 336 (641)
Q Consensus 257 ~~~G~~~~~~~~g~~i~a~~vI~A~G~~s~v~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 336 (641)
+++|+++.+|++|.+++||+||+|||.+|.+++++...+++.. ...++.++++++++|.++.....++.+.|+++|++
T Consensus 189 ~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~vr~~l~~~~gl~~--~~~p~~~g~g~~~~~~v~~~~~~~~~~~~~~g~~~ 266 (584)
T 2gmh_A 189 QKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRA--NCEPQTYGIGLKELWVIDEKKWKPGRVDHTVGWPL 266 (584)
T ss_dssp CTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTT--TSCCCCEEEEEEEEEECCGGGCCTTEEEEEEETTS
T ss_pred CCCCCCCCCCCCCEEEECCEEEEEECCCCHHHHHHHHHHCCCC--CCCCHHHHHHHHHHEECCCCCCCCCEEEEEEECCC
T ss_conf 6789745566776499879999940787467899999709998--89830087552462426700156985999984155
Q ss_pred CCCCCCEEEEEEEC--CCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCEEEECCEEEECCCCCCCCCCCC
Q ss_conf 99984519999908--9939999998368889999929999977519731520049926563217853178755783236
Q 006539 337 DQKTYGGSFLYHMN--DRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVF 414 (641)
Q Consensus 337 ~~~~~g~~~~~~~~--~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~ 414 (641)
.....++.|+|+.. ++.+.++++...++.++..++.+.+++++.+|.+.+.++.++.+.++.+.++.+++..+++|..
T Consensus 267 ~~~~~gg~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~l~~~~~~p~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (584)
T 2gmh_A 267 DRHTYGGSFLYHLNEGEPLLALGFVVGLDYQNPYLSPFREFQRWKHHPSIKPTLEGGKRIAYGARALNEGGFQSIPKLTF 346 (584)
T ss_dssp CTTSCEEEEEEECCSSSCEEEEEEEEETTCCCTTCCHHHHHHHHTTSTTTHHHHTTCEEEEEEEEEEECCGGGGCCCCEE
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHCHHHHHHHCCCEEEEECCEECCCCCCCCCCCCCC
T ss_conf 68867855999833789838999997167555559839999998749288897479859985456746888566874515
Q ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-----CCH---HHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 99999706877878877503599999999999998500157-----814---9999999985188999999964420121
Q 006539 415 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE-----DSN---MEIYWDTLQKSWVWQELQRARNYRPAFE 486 (641)
Q Consensus 415 ~~v~liGDAA~~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~-----~~~---l~~Ye~~~~~~~~~~~~~~~~~~~~~~~ 486 (641)
+|++|+|||||+++|+.|||+++||+||.+||+.|..++.. ..+ |..|++.++++|+.++++.+++++++|.
T Consensus 347 ~rv~LvGDAAh~~~P~~GqG~~~Ai~da~~LA~~L~~~~~~g~~~~~~a~~~L~~Ye~~r~~~~v~~~l~~~r~~~~~~~ 426 (584)
T 2gmh_A 347 PGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSENLQSKTIGLHVTEYEDNLKNSWVWKELYSVRNIRPSCH 426 (584)
T ss_dssp TTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHHTCCCCCCSSSSCCCTHHHHHHHTSHHHHHHHHTTTTTGGGG
T ss_pred CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 98899815444658544655799999999999999999973885313344039999999987689999999857467888
Q ss_pred -C-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf -0-45499999999999944998742489999953550100489998889998743466754112586346899996795
Q 006539 487 -Y-GLLPGLAICGLEHYILRGKSPYTLKHGKPDHEATDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRL 564 (641)
Q Consensus 487 -~-g~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~hl~~ 564 (641)
+ |.+++++..+++.++.+|+.||++++.++|+..+.+..+..+++||+||+++|||+++++|+|+++|+|+|++||+|
T Consensus 427 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hl~~ 506 (584)
T 2gmh_A 427 GILGVYGGMIYTGIFYWIFRGMEPWTLKHKGSDSDQLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTL 506 (584)
T ss_dssp STTTHHHHHHHHHHHTTTTTTCCSCCCCCCSCGGGCCCCGGGSCCCCCCCCCSSSSCCHHHHHHTTTCBCCSSSCCSEEE
T ss_pred HHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEEE
T ss_conf 76163899999999999708999874478887704346687568888888666553130212232266656787874897
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC-CEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 49999620368887785322138706999249888-325997248974589864228999814979999999976789
Q 006539 565 RDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKN-QLKLQINAQNCLHCKACDIKDPKQNIKWTVPEGGGGPGYSVM 641 (641)
Q Consensus 565 ~~~~~~~~~~~~~~~~~c~~~CP~~~~~~~~~~~~-~~~~~~~~~~C~~C~~C~~~cp~~~i~w~~p~gg~g~~~~~~ 641 (641)
+|.++|...|.+|++++|+++||++||++++++++ ..+++||+++|||||||+++||+++|+|+|||||+||+|++|
T Consensus 507 ~d~~~~~~~~~~~~~~~c~~~CPa~~~~~~~~~~~~~~~~~i~~~~Ci~C~~C~~~cp~~~i~~~~p~gg~g~~~~~~ 584 (584)
T 2gmh_A 507 KDDSVPVNRNLSIYDGPEQRFCPAGVYEFVPLEQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVVPEGGGGPAYNGM 584 (584)
T ss_dssp SSTTHHHHTHHHHHCCTHHHHCTTCCEEEEECSSTTCEEEEECGGGCCCCCHHHHHCTTCCEEECCCSTTCBCCCSCC
T ss_pred CCCCCCHHHCHHHHCCHHHHCCCHHHEEEEECCCCCCEEEEEECCCCCCCCCCHHHCCCCCCEEECCCCCCCCCCCCC
T ss_conf 575415132312332422320886558986437897237999688886778725348888834679999999684379
No 2
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=1.00 E-value=1 Score=276.27 Aligned_cols=339 Identities=19% Similarity=0.279 Sum_probs=220.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 64349999988889999999996401038997099975798889710134634958799864654531798243115761
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~iiEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (641)
+.|||+||||||+|+++|+.|++. |++|+|+||++.++....+|+.+.++.+.++ ... .....+...+. .
T Consensus 3 e~yDViIVGaGpaGl~~A~~La~~------G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l-~~~-~~~~~~~~~~~--~ 72 (397)
T 3oz2_A 3 ETYDVLVVGGGPGGSTAARYAAKY------GLKTLMIEKRPEIGSPVRCGEGLSKGILNEA-DIK-ADRSFIANEVK--G 72 (397)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHT------TCCEEEECSSSSTTCSCCSCCEEETHHHHHT-TCC-CCTTTEEEEES--E
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC------CCCEEEEECCCCCCCCCCEECCCCHHHHHHC-CCC-CHHHHHHCCCC--E
T ss_conf 878989999399999999999978------9969999079988987733462689999876-997-12446534230--4
Q ss_pred EEEEECC--CCCCCCCC-CCCCCCEEEEHHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf 8884067--52027997-77998479608999999999999769899219558899993898299999576643468996
Q 006539 186 FWFLTKD--RAFSLPSP-FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSK 262 (641)
Q Consensus 186 ~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~ 262 (641)
..+.... ........ .....++.++|..+.++|.+.+.+.|+++++++.++++..++ +.+.+|.... +++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~-~~~~~v~~~~-----~~~- 145 (397)
T 3oz2_A 73 ARIYGPSEKRPIILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKEN-GKVAGAKIRH-----NNE- 145 (397)
T ss_dssp EEEECTTCSSCEEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEET-TEEEEEEEEE-----TTE-
T ss_pred EEEEECCCCEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECC-CEEEEEEECC-----CCC-
T ss_conf 999958996676303444577404898799988999999874695886400245542036-3133101012-----455-
Q ss_pred CCCCCCCEEEECCEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 55666661997598999279998005999988299732546765323688999951588789995799822579999845
Q 006539 263 KENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYG 342 (641)
Q Consensus 263 ~~~~~~g~~i~a~~vI~A~G~~s~v~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 342 (641)
..++++|+||+|||.+|.+++.+ ++.. ............ .+........++.....++. ..+ .+
T Consensus 146 ------~~~~~a~~vIgAdG~~S~vr~~~----g~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~--~g 209 (397)
T 3oz2_A 146 ------IVDVRAKMVIAADGFESEFGRWA----GLKS-VILARNDIISAL--QYRMINVDVDPDYTDFYLGS-IAP--AG 209 (397)
T ss_dssp ------EEEEEEEEEEECCCTTCHHHHHH----TCGG-GCCCGGGEEEEE--EEEEESCCCCTTEEEEECST-TST--TE
T ss_pred ------CEEEEEEEEEECCCCCCHHHHHC----CCCC-CCCCCEEEEEEE--EEEEECCCCCCCCCEEEEEC-CCC--CC
T ss_conf ------16999738995776550889974----9986-553110122357--88851245686533035301-379--82
Q ss_pred EEEEEEECCCEEEEEEEECCCCCCCCCCHHHHHHHHH-CCCCHHHHCCCCCEEEECCEEEECCCCCCCCCCCCCCEEEEE
Q ss_conf 1999990899399999983688899999299999775-197315200499265632178531787557832369999970
Q 006539 343 GSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFK-HHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIG 421 (641)
Q Consensus 343 ~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~-~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~~~v~liG 421 (641)
..|+++.+++...+++....+.........+.++++. .+|.+ .....++.....++..... .++..+|++|+|
T Consensus 210 ~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~l~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~--~~~~~~~v~lvG 283 (397)
T 3oz2_A 210 YIWVFPKGEGMANVGIGSSINWIHNRFELKNYLDRFIENHPGL----KKGQDIQLVTGGVSVSKVK--MPITMPGLMLVG 283 (397)
T ss_dssp EEEEEEEETTEEEEEEEEETTTSCSHHHHHHHHHHHHHTCHHH----HTSEEEEEEEEEEECCCCC--SCCEETTEEECG
T ss_pred EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCC----CCCCEEEEEECCCCCCCCC--CCEEEEEEEECC
T ss_conf 2898403330358998505414444553999999999858444----4564134530331125765--430103699706
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 6877878877503599999999999998500157----81499999999851889999999644201
Q 006539 422 CAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWVWQELQRARNYRPA 484 (641)
Q Consensus 422 DAA~~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~----~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~ 484 (641)
||||.++|+.|||+++||+||.+||+.|.+++.. ...|+.|++.+++++.. +.......++.
T Consensus 284 DAA~~~~P~~G~Gi~~A~~~g~~~A~~i~~~l~~~~~~~~~L~~Ye~~~~~~~~~-~~~~~~~~~~~ 349 (397)
T 3oz2_A 284 DAARLIDPITGGGIANAIVSGMYAAQVTKEAIESNDYSPQMMQKYEKLIKERFER-KHLRNWVAKEK 349 (397)
T ss_dssp GGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_conf 5125679870022999999999999999999874996599999999999999999-99999999999
No 3
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=1.00 E-value=1 Score=248.27 Aligned_cols=345 Identities=16% Similarity=0.177 Sum_probs=212.4
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHCHHCCCCCCEEEECCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 664349999988889999999996401038997099975798889-7101346349587998646545317982431157
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVG-AHIISGNVFEPRALNELLPQWKQEEAPIRVPVSS 183 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~iiEk~~~~g-~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~ 183 (641)
.+++||+||||||+|+++|+.|++. |++|+|+|+.+.+. +...+|..+..+.+.++ ..+...........
T Consensus 4 ~~~~dVvIVGaG~aGl~aA~~La~~------G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~l-g~~~~~~~~~~~~~-- 74 (453)
T 3atr_A 4 ELKYDVLIIGGGFAGSSAAYQLSRR------GLKILLVDSKPWNRIGDKPCGDAVSKAHFDKL-GMPYPKGEELENKI-- 74 (453)
T ss_dssp EEECSEEEECCSHHHHHHHHHHSSS------SCCEEEECSSCGGGTTCSCCCCEEEHHHHHHT-TCCCCCGGGEEEEE--
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC------CCCEEEEECCCCCCCCCCCCCCCCCHHHHHHH-CCCCCCHHHHHHHH--
T ss_conf 7749999999599999999999978------99999997988888886630242109999984-68877568888652--
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 61888406752027997779984796089999999999997698992195588999938982999995766434689965
Q 006539 184 DKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKK 263 (641)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~ 263 (641)
..+.+........++ . ...++.+++..+.+.|.+.+.+.|+++++++.|+++..++ +.+.+|++.+. .+|+
T Consensus 75 ~~~~~~~~~~~~~~~--~-~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~-~~v~gv~~~~~---~~G~-- 145 (453)
T 3atr_A 75 NGIKLYSPDMQTVWT--V-NGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFED-GYVKGAVLFNR---RTNE-- 145 (453)
T ss_dssp EEEEEECTTSSCEEE--E-EEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEET-TEEEEEEEEET---TTTE--
T ss_pred CCEEEECCCCCEEEE--E-CCCCEEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEEEC-CEEEEEEEEEC---CCCC--
T ss_conf 655998898715876--7-7981798199999999999997699999674898999979-99999999986---8892--
Q ss_pred CCCCCCEEEECCEEEECCCCCCCHHHHHHHHCCCCCC--CCCCCCCEEEEEEEEEEECCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 5666661997598999279998005999988299732--54676532368899995158878999579982257999984
Q 006539 264 ENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREK--SHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTY 341 (641)
Q Consensus 264 ~~~~~g~~i~a~~vI~A~G~~s~v~~~l~~~~g~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 341 (641)
..+++||+||+|||.+|.+++.+ +...+ ....+..+..++...+.+......++.....++.+..++
T Consensus 146 -----~~~~~ad~VV~AdG~~s~vr~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 214 (453)
T 3atr_A 146 -----ELTVYSKVVVEATGYSRSFRSKL----PPELPITEDLDDKDADVAYREVLLTKEDIEDHDYLRIFIDQETSPG-- 214 (453)
T ss_dssp -----EEEEECSEEEECCGGGCTTGGGS----CTTSGGGCCCCGGGEEEEEEEEEEESSCCTTTTEEEEECCTTTSTT--
T ss_pred -----EEEEECCEEEECCCCCHHHHHHC----CCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCC--
T ss_conf -----69998699999869755668755----8877766677850101146888863787468880799977878997--
Q ss_pred CEEEEEEECCCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCEEEECCEEEECCCCCCCCCCCCCCEEEEE
Q ss_conf 51999990899399999983688899999299999775197315200499265632178531787557832369999970
Q 006539 342 GGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIG 421 (641)
Q Consensus 342 g~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~~~v~liG 421 (641)
|..|++|.+++.+.+++....+.. .....+.+..+... +.+.+...+.++.....++.. ...++|..+|++|+|
T Consensus 215 g~~~~~P~~~~~~~vg~~~~~~~~--~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~v~lvG 288 (453)
T 3atr_A 215 GYWWYFPKGKNKVNVGLGIQGGMG--YPSIHEYYKKYLDK--YAPDVDKSKLLVKGGALVPTR--RPLYTMAWNGIIVIG 288 (453)
T ss_dssp SCEEEEEEETTEEEEEEEEESSSC--CCCHHHHHHHHHHH--HCTTEEEEEEEEEEEEEEECS--SCCSCSEETTEEECG
T ss_pred CEEEEEECCCCEEEEEEEECCCCC--CCCHHHHHHHHHHH--HHHHCCCCEEEECCCEECCCC--CCCCCEECCCEEEEE
T ss_conf 089999879996999987648878--88888999999986--313327876984043135678--887742559889980
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 6877878877503599999999999998500157----814999999998518899999996442012
Q 006539 422 CAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (641)
Q Consensus 422 DAA~~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~----~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~ 485 (641)
||||.++|+.|+|+++||+||..||+.|..++.. ..+|..|++.+++. +.+.+...+.++.++
T Consensus 289 DAAh~~~P~~G~G~~~Ai~da~~la~~l~~~l~~~~~~~~~L~~Y~~~r~~~-~~~~~~~~~~~~~~~ 355 (453)
T 3atr_A 289 DSGFTVNPVHGGGKGSAMISGYCAAKAILSAFETGDFSASGLWDMNICYVNE-YGAKQASLDIFRRFL 355 (453)
T ss_dssp GGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHTCCSTTTTTHHHHHHHHH-THHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 7556779975644899999999999999999876995699999999999999-999988899999999
No 4
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=1.00 E-value=1 Score=244.73 Aligned_cols=340 Identities=19% Similarity=0.258 Sum_probs=222.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 64349999988889999999996401038997099975798889710134634958799864654531798243115761
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~iiEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~ 185 (641)
+++||+|||||++|+++|+.|++. |++|+|+|+...++....+++.+.++.+.++ ..|.. ........ ..
T Consensus 3 ~~~dVvIvG~G~aGl~~A~~La~~------G~~V~l~E~~~~~g~~~~~~~~~~~~~~~~l-g~~~~-~~~~~~~~--~~ 72 (397)
T 3cgv_A 3 ETYDVLVVGGGPGGSTAARYAAKY------GLKTLMIEKRPEIGSPVRCGEGLSKGILNEA-DIKAD-RSFIANEV--KG 72 (397)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHT------TCCEEEECSSSSTTCSCCSCCEEETHHHHHT-TCCCC-TTTEEEEE--SE
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC------CCCEEEEECCCCCCCCCCCCCCCCHHHHHHC-CCCCC-HHHHHHHC--CE
T ss_conf 609899999498999999999988------9989999588878998655664699999973-89998-67862313--56
Q ss_pred EEEEECCC-C-CCCCCC-CCCCCCEEEEHHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf 88840675-2-027997-77998479608999999999999769899219558899993898299999576643468996
Q 006539 186 FWFLTKDR-A-FSLPSP-FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSK 262 (641)
Q Consensus 186 ~~~~~~~~-~-~~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~ 262 (641)
+.+..... . +.++.. .....++.+++..+.+.|.+.+++.|++++.+++|+++..++ +.+.+|++.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~~v~gv~~~~~-------- 143 (397)
T 3cgv_A 73 ARIYGPSEKRPIILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKEN-GKVAGAKIRHN-------- 143 (397)
T ss_dssp EEEECTTCSSCEEEC-----CCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEET-TEEEEEEEEET--------
T ss_pred EEEECCCCCEEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHCCCEEEECCEEEEEEEEC-CEEEEEEEEEC--------
T ss_conf 899969997799971555677605997599999999999996799999777899999709-98999999978--------
Q ss_pred CCCCCCCEEEECCEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 55666661997598999279998005999988299732546765323688999951588789995799822579999845
Q 006539 263 KENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYG 342 (641)
Q Consensus 263 ~~~~~~g~~i~a~~vI~A~G~~s~v~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 342 (641)
.++.++++|+||+|+|.+|.+++.+ ++.. ....+..+..++.. .+......++.....++. ..+ .|
T Consensus 144 ----~~~~~~~a~~vV~A~G~~s~~~~~~----g~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~--~g 209 (397)
T 3cgv_A 144 ----NEIVDVRAKMVIAADGFESEFGRWA----GLKS-VILARNDIISALQY--RMINVDVDPDYTDFYLGS-IAP--AG 209 (397)
T ss_dssp ----TEEEEEEEEEEEECCCTTCHHHHHH----TCCT-TCCCGGGEEEEEEE--EEESCCCCTTEEEEECST-TST--TE
T ss_pred ----CEEEEEECCEEEECCCCCHHHHHHC----CCCC-CCCCHHHEEEEEEE--EECCCCCCCCCEEEEECC-CCC--CC
T ss_conf ----9079997199998989641768861----9986-67884351488899--962678899958998578-689--81
Q ss_pred EEEEEEECCCEEEEEEEECCCCCCCCCCHHHHHHHHHC-CCCHHHHCCCCCEEEECCEEEECCCCCCCCCCCCCCEEEEE
Q ss_conf 19999908993999999836888999992999997751-97315200499265632178531787557832369999970
Q 006539 343 GSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKH-HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIG 421 (641)
Q Consensus 343 ~~~~~~~~~~~~~ig~~~~~d~~~~~~~~~~~~~~~~~-~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~~~v~liG 421 (641)
..|++|.+++...+++....+.........+.++.+.. .|. +...+........+|..+ ..+++..+|++++|
T Consensus 210 ~~~~~P~~~~~~~vg~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~p~~~--~~~~~~~~~v~liG 283 (397)
T 3cgv_A 210 YIWVFPKGEGMANVGIGSSINWIHNRFELKNYLDRFIENHPG----LKKGQDIQLVTGGVSVSK--VKMPITMPGLMLVG 283 (397)
T ss_dssp EEEEEEEETTEEEEEEEEETTTCSCHHHHHHHHHHHHHTCHH----HHTSEEEEEEEEEEECCC--CCSCCEETTEEECG
T ss_pred EEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCC----CCCCEEEEEEEEEEECCC--CCCCEEECCEEEEE
T ss_conf 599998899969999996034356788999999999975867----788828740241561477--75533548989997
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 6877878877503599999999999998500157----814999999998518899999996442012
Q 006539 422 CAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (641)
Q Consensus 422 DAA~~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~----~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~ 485 (641)
||||.++|+.|+|+++|++||..||+.|.+.+.. ...|..|++.+++. +.+++...+.+..++
T Consensus 284 DAa~~~~P~~G~G~~~a~~~a~~la~~l~~~~~~~~~~~~~l~~Y~~~~~~~-~~~~~~~~~~~~~~~ 350 (397)
T 3cgv_A 284 DAARLIDPITGGGIANAIVSGMYAAQVTKEAIESNDYSPQMMQKYEKLIKER-FERKHLRNWVAKEKL 350 (397)
T ss_dssp GGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 4335778977778899999999999999999975995589999999999999-999999899999999
No 5
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=1.00 E-value=1 Score=239.03 Aligned_cols=331 Identities=16% Similarity=0.106 Sum_probs=205.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHCHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH------HHCCCCE
Q ss_conf 4664349999988889999999996401038997099975798889710134634958799864654------5317982
Q 006539 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQW------KQEEAPI 177 (641)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~iiEk~~~~g~~~~~g~~i~~~~l~~l~~~~------~~~~~~~ 177 (641)
....+||+||||||+||++|+.|++. |++|+|||+.+.+.. ...+..+.+..+.. +..+ .....+
T Consensus 20 ~~~~~dV~IVGaG~aGl~~A~~La~~------G~~V~v~E~~~~~~~-~~~~~~l~~~~~~~-l~~lg~~~~~~~~~~~- 90 (407)
T 3rp8_A 20 FQGHMKAIVIGAGIGGLSAAVALKQS------GIDCDVYEAVKEIKP-VGAAISVWPNGVKC-MAHLGMGDIMETFGGP- 90 (407)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSSCC-----CEEEECHHHHHH-HHHTTCHHHHHHHSCC-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC------CCCEEEEECCCCCCC-CCEEEEECHHHHHH-HHHCCCHHHHHHHCCC-
T ss_conf 79998799989878999999999967------998799967898788-68469999899999-9987987999863689-
Q ss_pred EEECCCCCEEEEECC-CC--CCCCCC----CCCCCCEEEEHHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCEEEEE
Q ss_conf 431157618884067-52--027997----77998479608999999999999769899219558899993898299999
Q 006539 178 RVPVSSDKFWFLTKD-RA--FSLPSP----FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIG 250 (641)
Q Consensus 178 ~~~~~~~~~~~~~~~-~~--~~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~g~~v~~i~~~~~g~v~~V~ 250 (641)
...+.+.... .. ..++.. ......+.+++..+.+.|.+.+.+ ++|+++++|+++..++++ + .|+
T Consensus 91 -----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~-v-~v~ 161 (407)
T 3rp8_A 91 -----LRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDADG-V-TVW 161 (407)
T ss_dssp -----CCEEEEEETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETTE-E-EEE
T ss_pred -----CCCEEEEECCCCCEEEEECCHHHHHHCCCCEEEEEHHHHHHHHHHHCCC--CEEEECCEEEEEEECCCC-E-EEE
T ss_conf -----7524999789997868733403455428863898999999999973886--779999999899943992-7-999
Q ss_pred ECCCCCCCCCCCCCCCCCCEEEECCEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCEEE-EEEEEEEECCCCCCCCCEE
Q ss_conf 576643468996556666619975989992799980059999882997325467653236-8899995158878999579
Q 006539 251 TNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYAL-GIKEVWEIDEGKHNPGEIL 329 (641)
Q Consensus 251 ~~d~g~~~~G~~~~~~~~g~~i~a~~vI~A~G~~s~v~~~l~~~~g~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~ 329 (641)
+.+ |.++++|+||+|||.+|.+|+.+. +... .+...+. .+......+..........
T Consensus 162 ~~~---------------g~~~~a~~vV~AdG~~S~vr~~l~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (407)
T 3rp8_A 162 FTD---------------GSSASGDLLIAADGSHSALRPWVL---GFTP----QRRYAGYVNWNGLVEIDEALAPGDQWT 219 (407)
T ss_dssp ETT---------------SCEEEESEEEECCCTTCSSHHHHH---SSCC----CCEEEEEEEEEEEEECCTTTCCTTEEE
T ss_pred ECC---------------CCEEEECEEEECCCCCHHHHHHHC---CCCC----CCCCCCCEEEEEEEECCCCCCCCCCEE
T ss_conf 869---------------989860989978785748889864---9999----974357479999986665567777408
Q ss_pred EEECCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCC--CCCHHHHHH-HHHC-CCCHHHHCCCC---CEEEECCEEEE
Q ss_conf 98225799998451999990899399999983688899--999299999-7751-97315200499---26563217853
Q 006539 330 HTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYHNP--FLNPYEEFQ-KFKH-HPAIKPLLEGG---TVVQYGARTLN 402 (641)
Q Consensus 330 ~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~~~~d~~~~--~~~~~~~~~-~~~~-~p~i~~~l~~~---~~~~~~~~~i~ 402 (641)
.++ .++ +..|++|..++...+.+....+.... .....+.+. .+.. .+.+.++++.. ....+. ..+
T Consensus 220 ~~~----~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 291 (407)
T 3rp8_A 220 TFV----GEG--KQVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRADLSRYFAGWAPPVQKLIAALDPQTTNRIE--IHD 291 (407)
T ss_dssp EEE----ETT--EEEEEEEETTTEEEEEEEEECCTTCSCCTTTHHHHHHHHTTTCCHHHHHHHHHSCGGGCEEEE--EEE
T ss_pred EEE----CCC--CEEEEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEE--EEE
T ss_conf 999----899--589999858992999999678767877801579999998667986999999718831243774--486
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 17875578323699999706877878877503599999999999998500157814999999998518899999996442
Q 006539 403 EGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYR 482 (641)
Q Consensus 403 ~~g~~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~~~~l~~Ye~~~~~~~~~~~~~~~~~~~ 482 (641)
.. ..++|..+|++|+|||||.++|+.|||+++||+||..||+.|........+|+.|++.|+.. ....+..++...
T Consensus 292 ~~---~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~da~~La~~L~~~~~~~~~l~~Y~~~r~~~-~~~~~~~s~~~~ 367 (407)
T 3rp8_A 292 IE---PFSRLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQTRDIAAALREYEAQRCDR-VRDLVLKARKRC 367 (407)
T ss_dssp CC---CCSCCEETTEEECGGGTCCCCGGGSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred CC---CCCCEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf 58---78851218799998242658842032688999999999999825898999999999999999-999999999841
Q ss_pred CHHH
Q ss_conf 0121
Q 006539 483 PAFE 486 (641)
Q Consensus 483 ~~~~ 486 (641)
.++.
T Consensus 368 ~~~~ 371 (407)
T 3rp8_A 368 DITH 371 (407)
T ss_dssp HHHT
T ss_pred HHHH
T ss_conf 3450
No 6
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=1.00 E-value=1 Score=238.43 Aligned_cols=330 Identities=18% Similarity=0.236 Sum_probs=205.9
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHCHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH---HHHH---CCCCEE
Q ss_conf 6643499999888899999999964010389970999757988897101346349587998646---5453---179824
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLP---QWKQ---EEAPIR 178 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~iiEk~~~~g~~~~~g~~i~~~~l~~l~~---~~~~---~~~~~~ 178 (641)
..++||+|||||++|+++|+.|++. |++|+|||+...... ..|..+.+..+..++. .+.. ...+..
T Consensus 5 ~~~~dVvIVGgG~aGl~aA~~La~~------G~~V~liE~~~~~~~--~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~ 76 (512)
T 3e1t_A 5 PEVFDLIVIGGGPGGSTLASFVAMR------GHRVLLLEREAFPRH--QIGESLLPATVHGICAMLGLTDEMKRAGFPIK 76 (512)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHTT------TCCEEEECSSCSSCC--CSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEE
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC------CCCEEEECCCCCCCC--CCCCCCCCCHHHHHHHHHCCHHHHHHCCCCCC
T ss_conf 8639999999688999999999968------998899846999887--77765375058999998196889997499513
Q ss_pred EECCCCCEEEEECCC--CCCCCC--CCCCCCCEEEEHHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCEEEEEECCC
Q ss_conf 311576188840675--202799--7779984796089999999999997698992195588999938982999995766
Q 006539 179 VPVSSDKFWFLTKDR--AFSLPS--PFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDM 254 (641)
Q Consensus 179 ~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~d~ 254 (641)
.. ..+.+..... .+.+.. .......+.+++..+.+.|.+.+++.|++++++++|+++..++ +.+.+|.+.+
T Consensus 77 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~-~~v~gv~~~~- 151 (512)
T 3e1t_A 77 RG---GTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEG-ERAVGVRYRN- 151 (512)
T ss_dssp CE---EEEECSSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEET-TEEEEEEEEC-
T ss_pred CC---CEEEECCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEC-CEEEEEEEEE-
T ss_conf 58---369846776555434354777776412675599999999999985799997587899999989-9899999993-
Q ss_pred CCCCCCCCCCCCCCCEEEECCEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECC--CCCCCCCEEEEE
Q ss_conf 434689965566666199759899927999800599998829973254676532368899995158--878999579982
Q 006539 255 GIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDE--GKHNPGEILHTL 332 (641)
Q Consensus 255 g~~~~G~~~~~~~~g~~i~a~~vI~A~G~~s~v~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~g~~~~~~ 332 (641)
.+|+. .++++|+||+|+|.+|.+++++ +... ........++...+.... .....+.....+
T Consensus 152 ---~dG~~-------~~i~ad~VI~AdG~~S~vr~~l----g~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 214 (512)
T 3e1t_A 152 ---TEGVE-------LMAHARFIVDASGNRTRVSQAV----GERV---YSRFFQNVALYGYFENGKRLPAPRQGNILSAA 214 (512)
T ss_dssp ---SSSCE-------EEEEEEEEEECCCTTCSSGGGT----CCEE---ECSTTCEEEEEEEEESCCCCSTTCTTSEEEEE
T ss_pred ---CCCCE-------EEEECCEEEECCCCCHHHHHHC----CCCC---CCCHHCCEEEEEEECCCCCCCCCCCCCEEEEE
T ss_conf ---89978-------9998588998988605889973----9876---68101426999995587568887768668999
Q ss_pred CCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCC-CCHHHHHHHH-HCCCCHHHHCCCCCEEEE---CCEEEECCCCC
Q ss_conf 257999984519999908993999999836888999-9929999977-519731520049926563---21785317875
Q 006539 333 GWPLDQKTYGGSFLYHMNDRQIALGLVVALNYHNPF-LNPYEEFQKF-KHHPAIKPLLEGGTVVQY---GARTLNEGGLQ 407 (641)
Q Consensus 333 ~~~~~~~~~g~~~~~~~~~~~~~ig~~~~~d~~~~~-~~~~~~~~~~-~~~p~i~~~l~~~~~~~~---~~~~i~~~g~~ 407 (641)
. + .|..|++|..++...++++...+..... ..+.+.++.+ ..+|.+.+.+........ ....+......
T Consensus 215 ~----~--~G~~~~~Pl~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~l~~~~~~~~~~~~~i~~~~~~~~ 288 (512)
T 3e1t_A 215 F----Q--DGWFWYIPLSDTLTSVGAVVSREAAEAIKDGHEAALLRYIDRCPIIKEYLAPATRVTTGDYGEIRIRKDYSY 288 (512)
T ss_dssp E----T--TEEEEEEECSSSEEEEEEEEEHHHHTTTSSCHHHHHHHHHHTSHHHHHHHTTCEECCSSTTSSCEEEESCCE
T ss_pred E----C--CCEEEEEEECCCEEEEEEEECHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCEEECCCCC
T ss_conf 6----7--944999993899089999966777433117999999999986953889971083524355566344146654
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC----CCHHHHHHHHHHHHH
Q ss_conf 578323699999706877878877503599999999999998500157----814999999998518
Q 006539 408 SIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSW 470 (641)
Q Consensus 408 ~~~~~~~~~v~liGDAA~~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~----~~~l~~Ye~~~~~~~ 470 (641)
..++++.+|++|||||||+++|+.|||+++|++||..||+.|...+.. ..+|..|++.+++.+
T Consensus 289 ~~~~~~~~~vvlvGDAAh~~~P~~GqG~~~Al~dA~~La~~L~~~l~~~~~~~~aL~~Ye~~~~~~~ 355 (512)
T 3e1t_A 289 CNTSFWKNGMALVGDAACFVDPVFSSGVHLATYSALLVARAINTCLAGEMSEQRCFEEFERRYRREY 355 (512)
T ss_dssp EESCSBCSSEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 4453256988997112206798334177899999999999999987188358999999999999999
No 7
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=1.00 E-value=1 Score=233.31 Aligned_cols=334 Identities=14% Similarity=0.076 Sum_probs=198.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHCHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHH--HHHHHHCCCCEEEECC
Q ss_conf 66434999998888999999999640103899709997579888971013463495879986--4654531798243115
Q 006539 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL--LPQWKQEEAPIRVPVS 182 (641)
Q Consensus 105 ~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~iiEk~~~~g~~~~~g~~i~~~~l~~l--~~~~~~~~~~~~~~~~ 182 (641)
.+++||+||||||+||++|+.|++. |++|+|||+.+.+... ..+..+.+..+..+ +..|........ ...
T Consensus 47 ~~~~DVvIVGaG~aGL~~A~~La~~------G~~V~VlEr~~~~~~~-~r~~~l~~~s~~~l~~lGl~~~l~~~~~-~~~ 118 (570)
T 3fmw_A 47 ALTTDVVVVGGGPVGLMLAGELRAG------GVGALVLEKLVEPVGH-DRAGALHIRTVETLDLRGLLDRFLEGTQ-VAK 118 (570)
T ss_dssp ----CEEEECCSHHHHHHHHHHHHT------TCCEEEEBSCSSCCCS-SSCCCBCHHHHHHHHTTTCHHHHTTSCC-BCS
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC------CCCEEEECCCCCCCCC-CEEEEECHHHHHHHHHCCCHHHHHHCCC-CCC
T ss_conf 7889989989699999999999978------9989999189999988-5398998899999998698589985072-667
Q ss_pred CCCEEEEECC--CCCCCCCC-CCCCCCEEEEHHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCEEEEEE--CCCCCC
Q ss_conf 7618884067--52027997-779984796089999999999997698992195588999938982999995--766434
Q 006539 183 SDKFWFLTKD--RAFSLPSP-FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGT--NDMGIA 257 (641)
Q Consensus 183 ~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~g~~v~~i~~~~~g~v~~V~~--~d~g~~ 257 (641)
. ...... ..+.+... ......+.+++..+.+.|.+.+++.|++|+++++|++++.++++. .|++ .+
T Consensus 119 --~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v--~v~~~~~~---- 189 (570)
T 3fmw_A 119 --G-LPFAGIFTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAV--EVTVAGPS---- 189 (570)
T ss_dssp --B-CCBTTBCTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCE--EEEEEETT----
T ss_pred --C-CEECCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEE--EEEEEECC----
T ss_conf --7-15377202444623367777705874799999999999986799999587888999869917--99999389----
Q ss_pred CCCCCCCCCCCC-EEEECCEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEECCCC
Q ss_conf 689965566666-1997598999279998005999988299732546765323688999951588789995799822579
Q 006539 258 KDGSKKENFQRG-VELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPL 336 (641)
Q Consensus 258 ~~G~~~~~~~~g-~~i~a~~vI~A~G~~s~v~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 336 (641)
| .++++|+||+|||.+|.+|+.+ ++.. ....+... ++.. .+...... . .+.|..
T Consensus 190 -----------G~~~~~a~~vV~ADG~~S~vR~~l----Gi~~-~~~~~~~~--~~~~--~v~~~~~~--~---~~~~~~ 244 (570)
T 3fmw_A 190 -----------GPYPVRARYGVGCDGGRSTVRRLA----ADRF-PGTEATVR--ALIG--YVTTPERE--V---PRRWER 244 (570)
T ss_dssp -----------EEEEEEESEEEECSCSSCHHHHHT----TCCC-CCCCCCEE--EEEE--ECCCCSCS--S---CCCCCC
T ss_pred -----------CCEEEEECEEEECCCCCCHHHHHC----CCCC-CCCEEEEE--EEEE--EEEECCCC--C---CEEEEE
T ss_conf -----------858999498998689874679875----9987-56300148--9999--99926888--6---337984
Q ss_pred CCCCCCEEEE-EEECCCEE-EEEEEECCCC---CCCCCCHHHHHHHHHCCCCHHHHCCCCCEEEECCEEEECCCCCCCCC
Q ss_conf 9998451999-99089939-9999983688---89999929999977519731520049926563217853178755783
Q 006539 337 DQKTYGGSFL-YHMNDRQI-ALGLVVALNY---HNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPY 411 (641)
Q Consensus 337 ~~~~~g~~~~-~~~~~~~~-~ig~~~~~d~---~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~ 411 (641)
.. .|..|+ +|..++.. .+.+...... .....+..+..+.+... ....+.......+.. .++. .....++
T Consensus 245 ~~--~G~~~~~~P~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~-~~~~-~~~~a~~ 318 (570)
T 3fmw_A 245 TP--DGILVLAFPPEGGLGPGWSSSSTGHSPAADEGPVTLEDLGAAVARV--RGTPLTLTEPVSWLS-RFGD-ASRQAKR 318 (570)
T ss_dssp CC--SSCEEECCCC------CEEEEEESCC-----CCCCHHHHHHHTTSS--SSCCCCCCSCCEEEE-EECC-CCEECSC
T ss_pred CC--CEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH--HHCCCCCCEEEEEEE-EEEC-CCCCCCC
T ss_conf 19--9899998654998499999995787755455689999999999987--304566312652268-8542-5500566
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHC
Q ss_conf 23699999706877878877503599999999999998500157---81499999999851889999999644201210
Q 006539 412 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAFEY 487 (641)
Q Consensus 412 ~~~~~v~liGDAA~~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~---~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~~~ 487 (641)
|..+|++|+|||||.++|+.|||+|+||+|+..|++.|...+.. ...|+.|++.|+.. ....+...+....+|..
T Consensus 319 ~~~grv~LvGDAAH~~~P~~GqG~n~gl~DA~~La~~La~~~~g~~~~~lL~~Ye~eR~~~-~~~~~~~s~~~~~l~~~ 396 (570)
T 3fmw_A 319 YRSGRVLLAGDAAHVHFPIGGQGLNTGLQDAVNLGWKLAARVRGWGSEELLDTYHDERHPV-AERVLLNTRAQLALMRP 396 (570)
T ss_dssp SEETTEEECGGGTEECCCCSSCHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSCS
T ss_pred CCCCCEEEEEECCEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCC
T ss_conf 4569899998425015997683776899899999999999874898099999999999999-99999999999998569
No 8
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=1.00 E-value=1 Score=231.59 Aligned_cols=350 Identities=16% Similarity=0.150 Sum_probs=197.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHH-----HCHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 64349999988889999999996-----4010389970999757988897101346349587998646545317982431
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQ-----LCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVP 180 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~-----~~~~~~~G~~V~iiEk~~~~g~~~~~g~~i~~~~l~~l~~~~~~~~~~~~~~ 180 (641)
.++||+||||||+||++|+.|++ . |++|+||||.+.... ...+..+.++++ +++..+..........
T Consensus 7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~------Gi~v~viE~~~~~~~-~gra~~l~~~tl-e~l~~lGl~~~l~~~~ 78 (665)
T 1pn0_A 7 SYCDVLIVGAGPAGLMAARVLSEYVRQKP------DLKVRIIDKRSTKVY-NGQADGLQCRTL-ESLKNLGLADKILSEA 78 (665)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHHHHST------TCCEEEECSSSSCCC-SCSCCEECHHHH-HHHHTTTCHHHHHTTC
T ss_pred CCCCEEEECCCHHHHHHHHHHHCCCCCCC------CCCEEEEECCCCCCC-CCCEEEECHHHH-HHHHHCCCHHHHHHHC
T ss_conf 98868999958999999999863655458------987899948999887-786658885899-9999778789999746
Q ss_pred CCCCCEEEEE--CCCCC----CCC---CCCCCCCCEEEEHHHHHHHHHHHHHHCC---CEEECCCEEEEEEECC------
Q ss_conf 1576188840--67520----279---9777998479608999999999999769---8992195588999938------
Q 006539 181 VSSDKFWFLT--KDRAF----SLP---SPFSNRGNYVISLSQLVRWLGGKAEELG---VEIYPGFAASEILYDA------ 242 (641)
Q Consensus 181 ~~~~~~~~~~--~~~~~----~~~---~~~~~~~~~~~~~~~l~~~L~~~~~~~g---v~i~~g~~v~~i~~~~------ 242 (641)
.....+.+.. ....+ .++ ........+.+++..+.+.|.+.+.+.| +++.+++.++++..++
T Consensus 79 ~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~ 158 (665)
T 1pn0_A 79 NDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDP 158 (665)
T ss_dssp BCCCEEEEEEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCT
T ss_pred CCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEEECCCCCCCC
T ss_conf 62421799947998626763356766678887805881099999999999986699854999699898999667545667
Q ss_pred -CCCEEEEEECCCC-----------CCCCCCCCCCC----------------CCC--EEEECCEEEECCCCCCCHHHHHH
Q ss_conf -9829999957664-----------34689965566----------------666--19975989992799980059999
Q 006539 243 -DNKVIGIGTNDMG-----------IAKDGSKKENF----------------QRG--VELRGRITLLAEGCRGSLSEKLI 292 (641)
Q Consensus 243 -~g~v~~V~~~d~g-----------~~~~G~~~~~~----------------~~g--~~i~a~~vI~A~G~~s~v~~~l~ 292 (641)
+..| .|++.+.. ...+|....++ .+| .+++||+||+|||.+|.+|+++
T Consensus 159 ~~~~V-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S~VR~~l- 236 (665)
T 1pn0_A 159 EAYPV-TMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTL- 236 (665)
T ss_dssp TCCCE-EEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCHHHHHH-
T ss_pred CCCCE-EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECEEEECCCCCCHHHHHC-
T ss_conf 88888-9999766643345321244445542112222334543211234557899648999488994268878899834-
Q ss_pred HHCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCC--CEEEEECCCCCCCCCCEEEEEEECCCEEEEEEEECCCC------
Q ss_conf 8829973254676532368899995158878999--57998225799998451999990899399999983688------
Q 006539 293 KNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPG--EILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNY------ 364 (641)
Q Consensus 293 ~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~~~~d~------ 364 (641)
++.. ..... ....++..+.... ..+. ...... ..+ .|..+++|.+++.+.+.+......
T Consensus 237 ---g~~~-~g~~~-~~~~~v~d~~~~~---~~p~~~~~~~~~---~~~--~g~~~~~P~~~~~~r~~~~~~~~~~~~~~~ 303 (665)
T 1pn0_A 237 ---GFEM-IGEQT-DYIWGVLDAVPAS---NFPDIRSRCAIH---SAE--SGSIMIIPRENNLVRFYVQLQARAEKGGRV 303 (665)
T ss_dssp ---TCCC-EEEEE-EEEEEEEEEEEEC---CCTTTTSEEEEE---CSS--SCEEEEEECSTTCEEEEEEECC--------
T ss_pred ---CCCC-CCCCC-CEEEEEEEEEECC---CCCCCCEEEEEE---ECC--CCEEEEEECCCCEEEEEEEECCCCCCCCCC
T ss_conf ---9998-89876-5799999999888---898753279999---379--826999983899899999937743455556
Q ss_pred CCCCCCHHHHHHHHHC--CCCHHHHCCCCCEEEECCEEEECCCCCCCCCCC-CCCEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 8999992999997751--973152004992656321785317875578323-6999997068778788775035999999
Q 006539 365 HNPFLNPYEEFQKFKH--HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPV-FPGGAIIGCAAGFLNVPKIKGTHTAMKS 441 (641)
Q Consensus 365 ~~~~~~~~~~~~~~~~--~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~~-~~~v~liGDAA~~~~P~~g~G~~~Ai~d 441 (641)
.....++.+..+.++. .|...++ ..+.+.. .++ .+....++|. .+|++|+|||||.++|..|||+|+||+|
T Consensus 304 ~~~~~t~e~~~~~~~~~~~~~~~~~----~~~~~~~-~~~-~~~r~a~~~~~~gRV~L~GDAAH~~~P~~GqG~N~gi~D 377 (665)
T 1pn0_A 304 DRTKFTPEVVIANAKKIFHPYTFDV----QQLDWFT-AYH-IGQRVTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMD 377 (665)
T ss_dssp --CCCCHHHHHHHHHHHHTTSCCEE----EEEEEEE-EEE-EEEEECSCSEETTTEEECGGGTEECCSTTCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCE----EEEEEEE-EEE-CCCEEHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHH
T ss_conf 7677999999999998738666760----2478888-632-150323112667988999773346897446773201989
Q ss_pred HHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 99999998500157---814999999998518899999996442012
Q 006539 442 GMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (641)
Q Consensus 442 a~~lA~~l~~~~~~---~~~l~~Ye~~~~~~~~~~~~~~~~~~~~~~ 485 (641)
+..|++.|...+.. ...|+.|+..|+.. ....+...+....+|
T Consensus 378 A~nLawkLa~vl~g~a~~~lL~tYe~eR~p~-a~~~i~~s~~~~~l~ 423 (665)
T 1pn0_A 378 TYNLGWKLGLVLTGRAKRDILKTYEEERQPF-AQALIDFDHQFSRLF 423 (665)
T ss_dssp HHHHHHHHHHHHTTCBCGGGGHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 9999999999973887099999999999999-999999999999985
No 9
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=1.00 E-value=1 Score=231.28 Aligned_cols=326 Identities=18% Similarity=0.179 Sum_probs=202.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHH--HHHH---HHCCCCEEEE
Q ss_conf 6434999998888999999999640103899709997579888971013463495879986--4654---5317982431
Q 006539 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL--LPQW---KQEEAPIRVP 180 (641)
Q Consensus 106 ~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~iiEk~~~~g~~~~~g~~i~~~~l~~l--~~~~---~~~~~~~~~~ 180 (641)
+++||+|||||++|+++|+.|++. |++|+|+|+...+.. ..|..+.+..+..+ +..+ ........
T Consensus 4 ~~~dVvIIGgG~aGl~~A~~La~~------G~~V~v~E~~~~~~~--~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~-- 73 (421)
T 3nix_A 4 EKVDVLVIGAGPAGTVAASLVNKS------GFKVKIVEKQKFPRF--VIGESLLPRCMEHLDEAGFLDAVKAQGFQQK-- 73 (421)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTT------TCCEEEECSSCSSCC--CSCCBCCGGGHHHHHHTTCHHHHHHTTCEEE--
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC------CCCEEEEECCCCCCC--CCCCCCCHHHHHHHHHCCCHHHHHHCCCCCC--
T ss_conf 639689999789999999999968------998999957899988--6067166768999998598689997087402--
Q ss_pred CCCCCEEEEECC--CCCCCCCCCC--CCCCEEEEHHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCEEEEEECCCCC
Q ss_conf 157618884067--5202799777--998479608999999999999769899219558899993898299999576643
Q 006539 181 VSSDKFWFLTKD--RAFSLPSPFS--NRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (641)
Q Consensus 181 ~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~~~~~gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~ 256 (641)
....+.... ..+.+..... ....+.+++..+.+.|.+.+++.|+++++++.|+++..++++.++.|.+.+
T Consensus 74 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~--- 147 (421)
T 3nix_A 74 ---FGAKFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDIN--- 147 (421)
T ss_dssp ---CEEEEEETTEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETT---
T ss_pred ---CCCEEEECCEEEEEEEHHHCCCCCCCEEEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEEECCC---
T ss_conf ---78589868914787301302789982267779999999999999689999858889999982998899999599---
Q ss_pred CCCCCCCCCCCCCEEEECCEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEC--CCCCCCCCEEEEECC
Q ss_conf 468996556666619975989992799980059999882997325467653236889999515--887899957998225
Q 006539 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEID--EGKHNPGEILHTLGW 334 (641)
Q Consensus 257 ~~~G~~~~~~~~g~~i~a~~vI~A~G~~s~v~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~g~~~~~~~~ 334 (641)
|+ ..++++|+||+|+|.+|.+++. ++.... ...+... .+...+... ......+.....+..
T Consensus 148 ---g~-------~~~~~a~~vV~A~G~~s~l~~~----~g~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (421)
T 3nix_A 148 ---GN-------KREIEARFIIDASGYGRVIPRM----FGLDKP-SGFESRR--TLFTHIKDVKRPVAAEMEGNRITAVV 210 (421)
T ss_dssp ---SC-------EEEEEEEEEEECCGGGCHHHHH----TTCEEC-CSSCCCE--EEEEEEECTTCCC----CCSEEEEEE
T ss_pred ---CC-------EEEEECCEEEECCCCCHHHHHH----CCCCCC-CCCCCCE--EEEEEECCCCCCCCCCCCCEEEEEEE
T ss_conf ---98-------8999859999998983466886----098777-8677867--99999778868876678974899986
Q ss_pred CCCCCCCCEEEEEEECCCEEEEEEEECCCCCCC-CCCHHHHHHHHH-CCCCHHHHCCCCCEEEECCEEEECCCCCCCCCC
Q ss_conf 799998451999990899399999983688899-999299999775-197315200499265632178531787557832
Q 006539 335 PLDQKTYGGSFLYHMNDRQIALGLVVALNYHNP-FLNPYEEFQKFK-HHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYP 412 (641)
Q Consensus 335 ~~~~~~~g~~~~~~~~~~~~~ig~~~~~d~~~~-~~~~~~~~~~~~-~~p~i~~~l~~~~~~~~~~~~i~~~g~~~~~~~ 412 (641)
... .+..|++|..++...++++...+.... ...+.+.++.+. ..|.+.+.+....... ..+.++... ...+++
T Consensus 211 -~~~--~g~~~~~P~~~~~~~vg~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~~~-~~~~~~~~~-~~~~~~ 285 (421)
T 3nix_A 211 -HKP--KVWIWVIPFSNGNTSVGFVGEPSYFDEYTGTPEERMRAMIANEGHIAERFKSEEFLF-EPRTIEGYA-ISASKL 285 (421)
T ss_dssp -EET--TEEEEEEECTTSEEEEEEEECHHHHTTSCSCHHHHHHHHHHTCTTTHHHHTTCCBSS-CCEEEECCC-BEESCS
T ss_pred -CCC--CEEEEEEEECCCCEEEEEEECHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHCCCCCC-CCEEECCCC-EEEEEE
T ss_conf -799--779999997899779999963888634379999999999986908999970595636-763524655-110241
Q ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHH
Q ss_conf 36999997068778788775035999999999999985001578--1499999999851
Q 006539 413 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHED--SNMEIYWDTLQKS 469 (641)
Q Consensus 413 ~~~~v~liGDAA~~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~~--~~l~~Ye~~~~~~ 469 (641)
..++++++|||||+++|+.|+|+++|++||..+|+.|.+.+... +.+..|++.++..
T Consensus 286 ~~~~v~lvGDAa~~~~P~~G~G~~~A~~~a~~la~~l~~~~~~~~~~~~~~y~~~~~~~ 344 (421)
T 3nix_A 286 YGDGFVLTGNATEFLDPIFSSGATFAMESGSKGGKLAVQFLKGEEVNWEKDFVEHMMQG 344 (421)
T ss_dssp EETTEEECGGGTCBCCSTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHTHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 06988996250025598234558799998999999999986178226999999999999
No 10
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=1.00 E-value=1 Score=230.02 Aligned_cols=327 Identities=17% Similarity=0.212 Sum_probs=198.9
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHCHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH---H---CCCCE
Q ss_conf 46643499999888899999999964010389970999757988897101346349587998646545---3---17982
Q 006539 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWK---Q---EEAPI 177 (641)
Q Consensus 104 ~~~~~DVvIVGgG~aGl~aA~~La~~~~~~~~G~~V~iiEk~~~~g~~~~~g~~i~~~~l~~l~~~~~---~---~~~~~ 177 (641)
+++.+||+|||||++|+++|+.|++. |++|+|||+....+.. .|..+.+.... ++..+. . .....
T Consensus 20 ~M~~~DVvIVGgG~AGl~aA~~Lar~------G~~V~LiEr~~~~~~~--~G~~l~p~~~~-~l~~lGl~~~l~~~~~~~ 90 (591)
T 3i3l_A 20 HMTRSKVAIIGGGPAGSVAGLTLHKL------GHDVTIYERSAFPRYR--VGESLLPGTMS-ILNRLGLQEKIDAQNYVK 90 (591)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCSSCCC--CCCBCCHHHHH-HHHHTTCHHHHHHHCCEE
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHCC------CCCEEEECCCCCCCCC--EEEEECHHHHH-HHHHCCCCHHHHHCCCCC
T ss_conf 37889999989679999999999829------9998998289989886--03368989999-999869908898569710
Q ss_pred EEECCCCCEEEEECCC--CCCCCCC----CCCCCCEEEEHHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCEEEEEE
Q ss_conf 4311576188840675--2027997----779984796089999999999997698992195588999938982999995
Q 006539 178 RVPVSSDKFWFLTKDR--AFSLPSP----FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGT 251 (641)
Q Consensus 178 ~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~g~~v~~i~~~~~g~v~~V~~ 251 (641)
.. ...+.+..... .+.+... ......+.+++..+.+.|.+.+++.|+++++++.|+++..++ +.+++|++
T Consensus 91 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~-g~~~~V~~ 166 (591)
T 3i3l_A 91 KP---SATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSD-PDRVVLTV 166 (591)
T ss_dssp EC---EEEEECSSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCS-TTCEEEEE
T ss_pred CC---CCEEEECCCCCCCEEECCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEECC-CCEEEEEE
T ss_conf 37---708995688764404214655555666706998599999999999986999999588999999759-97899999
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECC--CCCCCCCEE
Q ss_conf 766434689965566666199759899927999800599998829973254676532368899995158--878999579
Q 006539 252 NDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDE--GKHNPGEIL 329 (641)
Q Consensus 252 ~d~g~~~~G~~~~~~~~g~~i~a~~vI~A~G~~s~v~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~g~~~ 329 (641)
.+ +|. ..+++||+||+|+|.+|.+++++ ++.. ........++...+.... .....+...
T Consensus 167 ~~-----~G~-------~~~i~AdlVV~AdG~~S~lr~~l----g~~~---~~~~~~~~av~~~~~~~~~~~~~~~~~~~ 227 (591)
T 3i3l_A 167 RR-----GGE-------SVTVESDFVIDAGGSGGPISRKL----GVRQ---YDEFYRNFAVWSYFKLKDPFEGDLKGTTY 227 (591)
T ss_dssp EE-----TTE-------EEEEEESEEEECCGGGCHHHHHH----TCEE---EEEEEEEEEEEEEEECCCSCCSTTTTCEE
T ss_pred EC-----CCC-------EEEEECCEEEECCCCCCHHHHHC----CCCC---CCCCCCCEEEEEEEECCCCCCCCCCCCEE
T ss_conf 60-----893-------69997288998879864558971----9988---77422664999999557666677878527
Q ss_pred EEECCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCC--CCCHHHHHHHHH-CCCCHHHHCCCCCEEEECCEEEECCCC
Q ss_conf 98225799998451999990899399999983688899--999299999775-197315200499265632178531787
Q 006539 330 HTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYHNP--FLNPYEEFQKFK-HHPAIKPLLEGGTVVQYGARTLNEGGL 406 (641)
Q Consensus 330 ~~~~~~~~~~~~g~~~~~~~~~~~~~ig~~~~~d~~~~--~~~~~~~~~~~~-~~p~i~~~l~~~~~~~~~~~~i~~~g~ 406 (641)
..+. + .|..|.+|..++...+++....+.... ...+.+.++.+. ..|.+.+.+........ .+.++....
T Consensus 228 ~~~~----~--~G~~w~iPl~~~~~sv~~~~~~~~~~~l~~~~~~~~~~~l~~~~p~l~~~l~~~~~~~~-~~~~~~~~~ 300 (591)
T 3i3l_A 228 SITF----E--DGWVWMIPIKDDLYSVGLVVDRSKSAEVREQGADAFYSSTLAKCAKAMDILGGAEQVDE-VRIVQDWSY 300 (591)
T ss_dssp EEEE----T--TEEEEEEECSSSEEEEEEEEEGGGHHHHHHHCHHHHHHHHHTTCHHHHHHHTTCEECSC-CEEEEEEEE
T ss_pred EEEC----C--CCEEEEEECCCCEEEEEEECCHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHCCCCCCC-CEEECCCCC
T ss_conf 9970----8--84799998799869999982888876641389999999998769799998732755567-268526554
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC----CHHHHHHHHHHHHH
Q ss_conf 55783236999997068778788775035999999999999985001578----14999999998518
Q 006539 407 QSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHED----SNMEIYWDTLQKSW 470 (641)
Q Consensus 407 ~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~Ai~da~~lA~~l~~~~~~~----~~l~~Ye~~~~~~~ 470 (641)
..+++..+|+++||||||+++|+.|+|+++|++||..||+.|...+... ..+..|++.++..+
T Consensus 301 -~~~~~~~~rvvLIGDAAh~~~Pl~GqGinlAl~dA~~LA~~L~~~l~~~~~~~~al~~Y~~~~~~~~ 367 (591)
T 3i3l_A 301 -DTEVFSADRFFLCGDAACFTDPLFSQGVHLASQSAVSAAAAIDRITRHGDEKDAVHAWYNRTYREAY 367 (591)
T ss_dssp -EESCSEETTEEECGGGTCBCCGGGCCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred -CHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf -3021226999998054446898634519999999999999999987288417999999999999999
Done!