Query 006540
Match_columns 641
No_of_seqs 431 out of 2281
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 00:46:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0245 Kinesin-like protein [ 100.0 1.8E-90 3.8E-95 779.7 28.3 458 103-574 4-557 (1221)
2 KOG4280 Kinesin-like protein [ 100.0 2.2E-89 4.7E-94 756.1 25.3 350 103-464 5-368 (574)
3 KOG0243 Kinesin-like protein [ 100.0 4.6E-88 9.9E-93 773.1 34.2 332 102-441 48-402 (1041)
4 KOG0239 Kinesin (KAR3 subfamil 100.0 1.6E-88 3.6E-93 770.6 29.3 356 70-435 282-646 (670)
5 PLN03188 kinesin-12 family pro 100.0 2.2E-84 4.7E-89 748.9 40.9 347 102-467 97-468 (1320)
6 KOG0240 Kinesin (SMY1 subfamil 100.0 7.3E-84 1.6E-88 696.6 31.9 328 102-440 6-342 (607)
7 cd01370 KISc_KIP3_like Kinesin 100.0 1.9E-82 4.1E-87 677.3 35.4 316 104-429 1-338 (338)
8 cd01373 KISc_KLP2_like Kinesin 100.0 3E-82 6.6E-87 675.5 35.5 316 103-429 1-337 (337)
9 KOG0242 Kinesin-like protein [ 100.0 2.7E-81 5.8E-86 713.8 32.4 324 103-438 6-340 (675)
10 cd01368 KISc_KIF23_like Kinesi 100.0 3.4E-80 7.3E-85 661.7 35.4 315 104-427 2-345 (345)
11 KOG0241 Kinesin-like protein [ 100.0 8.5E-81 1.8E-85 689.6 29.3 332 103-442 4-364 (1714)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.7E-79 3.7E-84 658.7 37.0 327 103-436 1-356 (356)
13 cd01367 KISc_KIF2_like Kinesin 100.0 1.1E-78 2.4E-83 644.4 33.6 309 103-427 1-322 (322)
14 cd01376 KISc_KID_like Kinesin 100.0 3.9E-78 8.5E-83 639.3 35.6 309 104-427 1-319 (319)
15 cd01374 KISc_CENP_E Kinesin mo 100.0 6E-78 1.3E-82 638.2 36.1 315 104-429 1-321 (321)
16 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.5E-77 3.3E-82 642.5 36.1 327 103-437 2-351 (352)
17 cd01369 KISc_KHC_KIF5 Kinesin 100.0 1.7E-77 3.6E-82 635.6 35.8 316 103-429 2-325 (325)
18 cd01366 KISc_C_terminal Kinesi 100.0 4.4E-77 9.5E-82 633.2 37.6 323 102-432 1-329 (329)
19 cd01371 KISc_KIF3 Kinesin moto 100.0 3.4E-77 7.5E-82 635.6 35.1 317 104-429 2-333 (333)
20 cd01372 KISc_KIF4 Kinesin moto 100.0 1.9E-76 4.2E-81 631.1 34.6 317 104-430 2-341 (341)
21 cd01375 KISc_KIF9_like Kinesin 100.0 5.8E-76 1.3E-80 626.4 34.6 315 104-427 1-334 (334)
22 smart00129 KISc Kinesin motor, 100.0 9E-73 2E-77 601.1 36.9 322 104-436 1-335 (335)
23 cd00106 KISc Kinesin motor dom 100.0 1E-72 2.2E-77 598.4 36.8 316 104-427 1-328 (328)
24 PF00225 Kinesin: Kinesin moto 100.0 3.7E-72 8E-77 595.8 25.6 314 110-429 1-335 (335)
25 KOG0247 Kinesin-like protein [ 100.0 1.6E-67 3.4E-72 581.5 29.8 328 100-432 28-439 (809)
26 KOG0246 Kinesin-like protein [ 100.0 2.5E-67 5.4E-72 566.4 28.8 313 104-431 209-543 (676)
27 KOG0244 Kinesin-like protein [ 100.0 3.3E-68 7.1E-73 601.7 9.9 357 111-477 1-374 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 4.6E-63 9.9E-68 558.5 28.4 318 102-436 21-343 (568)
29 cd01363 Motor_domain Myosin an 100.0 1E-51 2.2E-56 405.8 18.5 177 159-408 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 99.1 8E-13 1.7E-17 150.6 -12.2 287 65-373 262-566 (568)
31 KOG0239 Kinesin (KAR3 subfamil 95.5 0.0088 1.9E-07 70.1 3.0 91 140-244 24-114 (670)
32 TIGR01242 26Sp45 26S proteasom 94.1 0.3 6.5E-06 53.2 10.2 18 175-192 156-173 (364)
33 COG0556 UvrB Helicase subunit 93.4 0.11 2.4E-06 58.8 5.5 91 142-236 3-101 (663)
34 PF00308 Bac_DnaA: Bacterial d 93.4 0.028 6E-07 57.1 0.7 49 143-193 4-52 (219)
35 COG2805 PilT Tfp pilus assembl 92.2 0.067 1.4E-06 57.0 1.6 30 164-193 114-143 (353)
36 PTZ00454 26S protease regulato 91.7 0.26 5.7E-06 54.7 5.5 18 175-192 179-196 (398)
37 PRK06893 DNA replication initi 91.4 0.14 3E-06 52.3 2.8 47 142-193 11-57 (229)
38 COG2804 PulE Type II secretory 91.2 0.11 2.4E-06 58.7 2.1 32 163-194 246-277 (500)
39 PRK06620 hypothetical protein; 90.9 0.086 1.9E-06 53.4 0.8 49 142-193 11-62 (214)
40 PRK12377 putative replication 90.7 0.14 3.1E-06 53.2 2.2 49 145-194 72-120 (248)
41 PRK03992 proteasome-activating 90.6 1.8 3.8E-05 47.9 10.7 18 175-192 165-182 (389)
42 PRK08084 DNA replication initi 90.6 0.15 3.2E-06 52.3 2.1 47 142-193 17-63 (235)
43 PRK08116 hypothetical protein; 89.8 0.16 3.4E-06 53.4 1.6 50 143-193 81-132 (268)
44 PRK14086 dnaA chromosomal repl 89.4 0.14 3.1E-06 59.5 1.0 50 142-193 283-332 (617)
45 PRK07952 DNA replication prote 89.3 0.21 4.6E-06 51.8 2.0 49 144-193 69-117 (244)
46 PRK05642 DNA replication initi 89.2 0.24 5.1E-06 50.8 2.3 49 142-193 14-63 (234)
47 COG1474 CDC6 Cdc6-related prot 89.0 0.51 1.1E-05 51.9 4.9 32 161-192 27-59 (366)
48 PRK14088 dnaA chromosomal repl 88.8 0.19 4.1E-06 56.4 1.4 49 142-193 100-148 (440)
49 TIGR03420 DnaA_homol_Hda DnaA 88.2 0.33 7.1E-06 48.5 2.5 47 142-193 10-56 (226)
50 TIGR00362 DnaA chromosomal rep 88.0 0.25 5.4E-06 54.6 1.7 50 142-193 105-154 (405)
51 PRK06835 DNA replication prote 88.0 0.21 4.5E-06 54.1 1.0 36 158-194 167-202 (329)
52 PRK14087 dnaA chromosomal repl 87.9 0.25 5.5E-06 55.6 1.7 49 143-193 111-159 (450)
53 PRK08903 DnaA regulatory inact 87.9 0.36 7.8E-06 48.7 2.6 48 142-193 13-60 (227)
54 TIGR02928 orc1/cdc6 family rep 87.5 0.35 7.5E-06 52.1 2.4 49 144-192 8-57 (365)
55 PRK00149 dnaA chromosomal repl 87.3 0.29 6.4E-06 54.9 1.7 50 142-193 117-166 (450)
56 PF04851 ResIII: Type III rest 86.6 0.3 6.5E-06 46.3 1.1 31 164-194 13-44 (184)
57 PTZ00361 26 proteosome regulat 86.5 2.5 5.3E-05 47.7 8.4 16 177-192 219-234 (438)
58 PRK09087 hypothetical protein; 86.4 0.34 7.3E-06 49.6 1.4 47 142-193 16-62 (226)
59 PRK00411 cdc6 cell division co 86.1 0.47 1E-05 51.7 2.5 48 145-192 24-72 (394)
60 COG1484 DnaC DNA replication p 85.4 0.52 1.1E-05 49.2 2.2 42 151-194 83-124 (254)
61 PRK06526 transposase; Provisio 84.9 0.32 7E-06 50.7 0.5 21 172-194 97-117 (254)
62 PRK08939 primosomal protein Dn 84.5 0.41 8.9E-06 51.3 1.0 51 144-194 124-175 (306)
63 PRK08727 hypothetical protein; 83.8 0.64 1.4E-05 47.6 2.1 45 142-193 14-59 (233)
64 cd00009 AAA The AAA+ (ATPases 83.5 0.69 1.5E-05 41.2 2.0 25 168-192 12-36 (151)
65 cd00046 DEXDc DEAD-like helica 82.7 0.43 9.4E-06 42.1 0.3 17 178-194 3-19 (144)
66 PRK08181 transposase; Validate 82.5 0.65 1.4E-05 49.0 1.5 21 172-194 105-125 (269)
67 PF00270 DEAD: DEAD/DEAH box h 82.2 0.68 1.5E-05 43.5 1.4 27 165-193 6-32 (169)
68 PF13245 AAA_19: Part of AAA d 81.9 0.62 1.3E-05 39.6 0.9 26 167-193 3-28 (76)
69 PRK10436 hypothetical protein; 81.6 0.63 1.4E-05 52.7 1.1 29 165-193 208-236 (462)
70 TIGR02538 type_IV_pilB type IV 80.9 0.7 1.5E-05 53.6 1.2 29 165-193 306-334 (564)
71 TIGR03689 pup_AAA proteasome A 80.7 7.1 0.00015 44.9 9.1 16 177-192 218-233 (512)
72 TIGR02533 type_II_gspE general 80.5 0.81 1.8E-05 52.2 1.5 29 165-193 232-260 (486)
73 smart00053 DYNc Dynamin, GTPas 80.4 2.7 5.8E-05 43.6 5.2 54 275-342 85-138 (240)
74 PRK12402 replication factor C 79.9 0.81 1.7E-05 48.5 1.2 42 145-193 13-54 (337)
75 COG5008 PilU Tfp pilus assembl 79.7 1.1 2.4E-05 47.2 2.1 34 159-192 109-144 (375)
76 PF13401 AAA_22: AAA domain; P 79.7 0.53 1.2E-05 42.5 -0.2 18 175-192 4-21 (131)
77 PF13191 AAA_16: AAA ATPase do 79.2 0.57 1.2E-05 44.8 -0.2 32 161-192 10-41 (185)
78 PF01935 DUF87: Domain of unkn 79.1 0.66 1.4E-05 46.8 0.2 15 178-192 26-40 (229)
79 smart00382 AAA ATPases associa 79.0 0.69 1.5E-05 40.7 0.3 18 176-193 3-20 (148)
80 PRK06921 hypothetical protein; 78.9 1.2 2.6E-05 46.7 2.1 35 159-193 98-135 (266)
81 TIGR01420 pilT_fam pilus retra 78.8 0.96 2.1E-05 49.1 1.4 29 165-193 112-140 (343)
82 PTZ00112 origin recognition co 78.8 1.3 2.8E-05 53.7 2.5 33 160-192 764-798 (1164)
83 PF01637 Arch_ATPase: Archaeal 78.4 0.8 1.7E-05 45.1 0.5 30 163-192 8-37 (234)
84 PRK12422 chromosomal replicati 78.2 1.3 2.8E-05 50.0 2.2 51 141-193 105-159 (445)
85 cd01131 PilT Pilus retraction 78.0 0.78 1.7E-05 45.7 0.4 18 176-193 2-19 (198)
86 PF12846 AAA_10: AAA-like doma 77.3 0.8 1.7E-05 47.1 0.2 19 175-193 1-19 (304)
87 TIGR02525 plasmid_TraJ plasmid 76.9 1.2 2.7E-05 49.0 1.5 28 165-193 140-167 (372)
88 TIGR02524 dot_icm_DotB Dot/Icm 76.3 1.3 2.8E-05 48.6 1.5 23 171-193 130-152 (358)
89 cd01129 PulE-GspE PulE/GspE Th 76.1 1.4 2.9E-05 46.3 1.5 30 164-193 69-98 (264)
90 PF13604 AAA_30: AAA domain; P 75.5 1.4 3E-05 44.0 1.3 28 165-192 8-35 (196)
91 PF01695 IstB_IS21: IstB-like 75.4 1.7 3.7E-05 42.8 1.9 20 175-194 47-66 (178)
92 COG0593 DnaA ATPase involved i 75.4 1.5 3.2E-05 49.0 1.6 50 142-193 82-131 (408)
93 PRK13894 conjugal transfer ATP 74.6 1.8 3.8E-05 46.8 1.9 28 164-192 138-165 (319)
94 PF00437 T2SE: Type II/IV secr 74.4 1.2 2.6E-05 46.2 0.6 71 103-192 74-144 (270)
95 TIGR00635 ruvB Holliday juncti 73.9 1.9 4.1E-05 45.4 1.9 42 151-192 4-47 (305)
96 TIGR02782 TrbB_P P-type conjug 73.6 1.8 3.9E-05 46.2 1.8 30 163-193 121-150 (299)
97 PRK13900 type IV secretion sys 73.5 1.9 4.1E-05 46.8 1.8 30 163-193 149-178 (332)
98 TIGR03015 pepcterm_ATPase puta 73.4 2 4.4E-05 44.0 2.0 24 169-192 37-60 (269)
99 PF13086 AAA_11: AAA domain; P 72.3 1.8 3.9E-05 42.5 1.3 28 165-193 8-35 (236)
100 COG1201 Lhr Lhr-like helicases 72.3 4.1 8.9E-05 49.2 4.4 53 165-228 29-82 (814)
101 PF13479 AAA_24: AAA domain 71.6 1.6 3.4E-05 44.1 0.6 20 175-194 3-22 (213)
102 PF00448 SRP54: SRP54-type pro 71.1 1.3 2.9E-05 44.3 0.0 17 177-193 3-19 (196)
103 PF06309 Torsin: Torsin; Inte 70.4 1.7 3.6E-05 41.0 0.5 25 178-212 56-80 (127)
104 PF00004 AAA: ATPase family as 70.1 1.6 3.5E-05 39.1 0.3 15 178-192 1-15 (132)
105 PF13207 AAA_17: AAA domain; P 69.8 1.8 4E-05 38.6 0.6 16 177-192 1-16 (121)
106 PRK13833 conjugal transfer pro 69.8 2.5 5.4E-05 45.8 1.7 30 163-193 133-162 (323)
107 COG4962 CpaF Flp pilus assembl 69.1 2.5 5.4E-05 46.1 1.5 29 164-193 163-191 (355)
108 cd01130 VirB11-like_ATPase Typ 68.9 2.9 6.2E-05 41.1 1.8 29 163-192 14-42 (186)
109 KOG4010 Coiled-coil protein TP 68.6 7.7 0.00017 38.6 4.6 55 51-105 34-93 (208)
110 PRK13851 type IV secretion sys 68.0 2.7 6E-05 45.8 1.6 30 163-193 151-180 (344)
111 smart00487 DEXDc DEAD-like hel 67.8 3.1 6.7E-05 39.1 1.8 29 165-194 15-43 (201)
112 PF03215 Rad17: Rad17 cell cyc 67.6 3 6.5E-05 48.0 1.9 32 161-192 29-62 (519)
113 PRK12723 flagellar biosynthesi 67.2 3.8 8.2E-05 45.5 2.5 18 175-192 174-191 (388)
114 TIGR03499 FlhF flagellar biosy 67.1 4 8.7E-05 43.1 2.6 17 177-193 196-212 (282)
115 PF05970 PIF1: PIF1-like helic 66.7 2.9 6.3E-05 45.7 1.5 37 153-192 3-39 (364)
116 PF05496 RuvB_N: Holliday junc 66.6 6 0.00013 40.9 3.6 43 150-192 23-67 (233)
117 cd00268 DEADc DEAD-box helicas 65.3 3.8 8.2E-05 40.0 1.9 27 164-192 27-53 (203)
118 PF02562 PhoH: PhoH-like prote 64.9 4 8.7E-05 41.4 2.0 25 166-192 12-36 (205)
119 PRK04195 replication factor C 64.7 4.3 9.3E-05 46.1 2.4 37 156-192 19-56 (482)
120 PF00580 UvrD-helicase: UvrD/R 64.6 2.4 5.3E-05 43.8 0.4 20 174-193 12-31 (315)
121 PRK11776 ATP-dependent RNA hel 64.1 3.9 8.4E-05 45.9 1.9 27 164-192 32-58 (460)
122 PRK13342 recombination factor 64.1 3.4 7.5E-05 45.9 1.5 38 155-192 16-53 (413)
123 PF01580 FtsK_SpoIIIE: FtsK/Sp 63.8 2.2 4.7E-05 42.3 -0.1 17 177-193 40-56 (205)
124 PLN03137 ATP-dependent DNA hel 63.7 30 0.00065 43.6 9.3 27 164-192 466-492 (1195)
125 PRK00080 ruvB Holliday junctio 63.7 3.6 7.9E-05 44.1 1.5 40 154-193 28-69 (328)
126 PTZ00424 helicase 45; Provisio 63.7 3.8 8.2E-05 44.7 1.7 27 164-192 56-82 (401)
127 KOG0989 Replication factor C, 63.5 4.7 0.0001 43.4 2.2 41 152-192 32-74 (346)
128 TIGR00631 uvrb excinuclease AB 63.4 6.2 0.00013 46.8 3.4 88 144-235 2-97 (655)
129 PF13671 AAA_33: AAA domain; P 62.9 2.9 6.2E-05 38.4 0.5 15 178-192 2-16 (143)
130 PHA02544 44 clamp loader, smal 62.1 3.8 8.3E-05 43.3 1.3 23 171-193 38-61 (316)
131 TIGR02788 VirB11 P-type DNA tr 61.8 4.8 0.0001 43.0 2.0 29 163-192 133-161 (308)
132 PRK09183 transposase/IS protei 61.7 4.2 9E-05 42.5 1.5 20 172-193 101-120 (259)
133 PF00910 RNA_helicase: RNA hel 61.1 2.5 5.5E-05 37.8 -0.2 26 178-213 1-26 (107)
134 PRK11192 ATP-dependent RNA hel 61.0 4.5 9.9E-05 44.9 1.7 27 164-192 29-55 (434)
135 PRK04837 ATP-dependent RNA hel 60.3 4.8 0.0001 44.6 1.8 27 164-192 36-62 (423)
136 PRK06547 hypothetical protein; 60.2 6.7 0.00014 38.5 2.5 28 165-192 5-32 (172)
137 PF05673 DUF815: Protein of un 60.1 8.9 0.00019 40.1 3.5 110 167-310 43-154 (249)
138 PF13238 AAA_18: AAA domain; P 59.4 3.6 7.8E-05 36.6 0.5 15 178-192 1-15 (129)
139 PF00063 Myosin_head: Myosin h 59.0 5.4 0.00012 47.4 1.9 37 156-192 65-102 (689)
140 PLN03025 replication factor C 58.8 4.9 0.00011 43.0 1.4 17 177-193 36-52 (319)
141 TIGR00348 hsdR type I site-spe 58.8 5.8 0.00013 47.0 2.2 30 163-193 247-281 (667)
142 PF07728 AAA_5: AAA domain (dy 58.5 3.1 6.7E-05 38.3 -0.1 15 178-192 2-16 (139)
143 PRK13764 ATPase; Provisional 58.4 4.5 9.8E-05 47.4 1.2 19 175-193 257-275 (602)
144 PF12329 TMF_DNA_bd: TATA elem 58.3 52 0.0011 28.0 7.3 53 441-493 8-60 (74)
145 TIGR02881 spore_V_K stage V sp 58.2 7.3 0.00016 40.4 2.5 17 176-192 43-59 (261)
146 PRK10590 ATP-dependent RNA hel 58.1 5.9 0.00013 44.6 2.0 27 164-192 29-55 (456)
147 PF07724 AAA_2: AAA domain (Cd 57.3 4.2 9.2E-05 39.8 0.6 17 176-192 4-20 (171)
148 PF11932 DUF3450: Protein of u 57.2 45 0.00098 34.6 8.2 41 448-488 52-92 (251)
149 PF06414 Zeta_toxin: Zeta toxi 56.6 4.3 9.2E-05 40.3 0.5 20 173-192 13-32 (199)
150 KOG0728 26S proteasome regulat 55.9 1E+02 0.0022 32.8 10.3 18 174-191 180-197 (404)
151 COG4942 Membrane-bound metallo 55.9 50 0.0011 37.2 8.5 44 445-488 59-102 (420)
152 PRK00440 rfc replication facto 55.8 5.5 0.00012 41.8 1.2 21 172-192 35-55 (319)
153 PHA00729 NTP-binding motif con 55.2 8.9 0.00019 39.5 2.6 29 165-193 7-35 (226)
154 smart00338 BRLZ basic region l 55.0 63 0.0014 26.3 7.1 39 443-481 24-62 (65)
155 KOG0926 DEAH-box RNA helicase 54.5 7.4 0.00016 46.6 2.0 36 174-209 270-319 (1172)
156 KOG0340 ATP-dependent RNA heli 54.4 11 0.00025 41.3 3.3 42 164-207 35-82 (442)
157 PF02388 FemAB: FemAB family; 54.1 78 0.0017 35.3 10.0 47 360-408 194-240 (406)
158 KOG2373 Predicted mitochondria 54.1 11 0.00024 41.4 3.1 28 165-193 261-291 (514)
159 PF12775 AAA_7: P-loop contain 53.9 7.1 0.00015 41.1 1.7 28 164-192 23-50 (272)
160 PRK10536 hypothetical protein; 53.8 5.1 0.00011 42.2 0.6 41 143-192 51-91 (262)
161 TIGR00614 recQ_fam ATP-depende 53.6 7.1 0.00015 44.1 1.7 27 164-192 17-43 (470)
162 PF00170 bZIP_1: bZIP transcri 53.3 79 0.0017 25.7 7.4 38 442-479 23-60 (64)
163 PRK11448 hsdR type I restricti 53.2 6.5 0.00014 49.4 1.4 29 165-194 424-452 (1123)
164 PRK13341 recombination factor 53.1 7.1 0.00015 46.8 1.7 22 172-193 49-70 (725)
165 COG1219 ClpX ATP-dependent pro 52.8 5.8 0.00013 43.1 0.8 18 174-191 96-113 (408)
166 KOG4571 Activating transcripti 52.8 54 0.0012 35.0 7.8 42 445-486 248-289 (294)
167 PRK14722 flhF flagellar biosyn 52.6 5.2 0.00011 44.2 0.4 19 175-193 137-155 (374)
168 smart00763 AAA_PrkA PrkA AAA d 51.8 12 0.00026 41.3 3.0 47 142-192 44-95 (361)
169 KOG3859 Septins (P-loop GTPase 51.8 7.8 0.00017 41.3 1.5 29 164-192 30-59 (406)
170 PRK05703 flhF flagellar biosyn 51.7 9.8 0.00021 42.7 2.4 17 177-193 223-239 (424)
171 cd01383 MYSc_type_VIII Myosin 51.5 11 0.00024 44.8 2.9 36 157-192 73-109 (677)
172 PRK11889 flhF flagellar biosyn 51.4 9.8 0.00021 42.7 2.3 18 176-193 242-259 (436)
173 PRK01297 ATP-dependent RNA hel 51.1 8.1 0.00018 43.6 1.7 27 164-192 115-141 (475)
174 cd00124 MYSc Myosin motor doma 50.6 11 0.00024 44.9 2.7 36 157-192 67-103 (679)
175 PRK00771 signal recognition pa 50.6 13 0.00028 42.0 3.2 18 175-192 95-112 (437)
176 COG1419 FlhF Flagellar GTP-bin 50.4 9.6 0.00021 42.5 2.0 18 175-192 203-220 (407)
177 COG1223 Predicted ATPase (AAA+ 50.3 6.1 0.00013 41.8 0.5 18 175-192 151-168 (368)
178 cd01385 MYSc_type_IX Myosin mo 50.2 12 0.00025 44.8 2.8 36 157-192 75-111 (692)
179 PHA02653 RNA helicase NPH-II; 50.2 11 0.00025 44.7 2.7 26 164-191 170-195 (675)
180 PRK06696 uridine kinase; Valid 50.0 14 0.0003 37.4 3.0 34 159-192 6-39 (223)
181 PF06048 DUF927: Domain of unk 49.7 12 0.00027 39.5 2.7 28 164-192 183-210 (286)
182 cd01120 RecA-like_NTPases RecA 49.5 5.8 0.00013 36.4 0.1 15 178-192 2-16 (165)
183 cd01381 MYSc_type_VII Myosin m 49.4 13 0.00028 44.3 3.0 36 157-192 67-103 (671)
184 PRK11331 5-methylcytosine-spec 49.3 10 0.00022 43.0 2.1 38 394-435 320-359 (459)
185 TIGR02640 gas_vesic_GvpN gas v 49.3 13 0.00028 38.7 2.7 27 164-192 12-38 (262)
186 cd01378 MYSc_type_I Myosin mot 49.3 12 0.00026 44.6 2.7 36 157-192 67-103 (674)
187 KOG0354 DEAD-box like helicase 49.2 12 0.00026 44.8 2.6 43 147-192 44-93 (746)
188 PRK10865 protein disaggregatio 49.1 11 0.00024 46.1 2.5 45 144-192 565-615 (857)
189 cd01387 MYSc_type_XV Myosin mo 49.0 12 0.00027 44.5 2.8 36 157-192 68-104 (677)
190 PRK14974 cell division protein 48.9 13 0.00028 40.6 2.7 19 174-192 139-157 (336)
191 PHA02244 ATPase-like protein 48.8 15 0.00033 40.7 3.2 25 166-192 112-136 (383)
192 COG3883 Uncharacterized protei 48.7 1E+02 0.0023 32.6 9.1 30 449-478 42-71 (265)
193 PRK10416 signal recognition pa 48.5 13 0.00029 40.1 2.7 17 176-192 115-131 (318)
194 PRK04537 ATP-dependent RNA hel 48.5 9.9 0.00022 44.3 1.9 27 164-192 37-63 (572)
195 PLN00020 ribulose bisphosphate 48.5 12 0.00026 41.7 2.3 51 142-192 110-165 (413)
196 PF02456 Adeno_IVa2: Adenoviru 48.4 6.7 0.00015 42.4 0.4 36 176-211 88-139 (369)
197 KOG0727 26S proteasome regulat 48.3 96 0.0021 33.0 8.7 85 132-216 140-247 (408)
198 smart00242 MYSc Myosin. Large 48.1 12 0.00026 44.5 2.5 37 156-192 72-109 (677)
199 TIGR00064 ftsY signal recognit 47.7 13 0.00029 39.1 2.5 18 176-193 73-90 (272)
200 PF00735 Septin: Septin; Inte 47.6 7.3 0.00016 41.3 0.6 21 172-192 1-21 (281)
201 PF05729 NACHT: NACHT domain 47.6 7.2 0.00016 36.2 0.4 16 177-192 2-17 (166)
202 TIGR00618 sbcc exonuclease Sbc 47.5 18 0.00038 45.3 3.9 17 176-192 27-43 (1042)
203 TIGR03819 heli_sec_ATPase heli 47.1 11 0.00024 41.0 1.9 30 162-192 166-195 (340)
204 TIGR00602 rad24 checkpoint pro 47.0 9 0.0002 45.3 1.2 38 156-193 89-128 (637)
205 cd01384 MYSc_type_XI Myosin mo 46.5 14 0.0003 44.1 2.6 36 157-192 69-105 (674)
206 TIGR02237 recomb_radB DNA repa 46.4 11 0.00023 37.4 1.4 25 168-192 2-29 (209)
207 PRK04328 hypothetical protein; 46.3 13 0.00029 38.4 2.2 27 165-191 10-39 (249)
208 cd01380 MYSc_type_V Myosin mot 46.2 14 0.00031 44.1 2.8 36 157-192 67-103 (691)
209 COG1222 RPT1 ATP-dependent 26S 46.2 40 0.00086 37.4 5.8 15 177-191 187-201 (406)
210 PLN00206 DEAD-box ATP-dependen 46.1 13 0.00029 42.6 2.4 27 164-192 149-175 (518)
211 PRK11034 clpA ATP-dependent Cl 46.1 14 0.0003 44.6 2.7 37 156-192 463-505 (758)
212 PRK00131 aroK shikimate kinase 46.0 9.1 0.0002 36.1 0.9 17 176-192 5-21 (175)
213 KOG0335 ATP-dependent RNA heli 46.0 9 0.0002 43.5 1.0 62 167-233 105-189 (482)
214 TIGR00376 DNA helicase, putati 45.8 11 0.00023 44.6 1.6 27 167-194 166-192 (637)
215 PF08298 AAA_PrkA: PrkA AAA do 45.8 37 0.00081 37.4 5.6 47 166-212 76-143 (358)
216 PF10168 Nup88: Nuclear pore c 45.6 76 0.0017 38.2 8.6 36 252-287 365-405 (717)
217 TIGR01241 FtsH_fam ATP-depende 45.4 11 0.00023 43.1 1.5 46 143-192 51-105 (495)
218 TIGR02902 spore_lonB ATP-depen 45.3 13 0.00028 43.0 2.1 41 145-192 63-103 (531)
219 TIGR01359 UMP_CMP_kin_fam UMP- 44.8 9.3 0.0002 36.8 0.8 15 178-192 2-16 (183)
220 PF06745 KaiC: KaiC; InterPro 44.7 13 0.00028 37.3 1.8 25 167-191 8-35 (226)
221 TIGR01618 phage_P_loop phage n 44.6 8.1 0.00018 39.6 0.3 20 175-194 12-31 (220)
222 cd01126 TraG_VirD4 The TraG/Tr 44.5 12 0.00025 41.1 1.5 16 178-193 2-17 (384)
223 KOG2543 Origin recognition com 44.5 7.8 0.00017 43.0 0.2 37 177-232 32-68 (438)
224 PRK11634 ATP-dependent RNA hel 44.4 14 0.00031 43.5 2.4 27 164-192 34-60 (629)
225 PF04102 SlyX: SlyX; InterPro 44.2 1.3E+02 0.0029 25.0 7.5 47 445-491 4-50 (69)
226 KOG4552 Vitamin-D-receptor int 43.9 3.8E+02 0.0082 27.6 12.7 63 447-509 76-138 (272)
227 PRK11057 ATP-dependent DNA hel 43.9 14 0.0003 43.3 2.2 27 164-192 31-57 (607)
228 PF13173 AAA_14: AAA domain 43.9 8.5 0.00018 35.3 0.3 17 177-193 4-20 (128)
229 cd01123 Rad51_DMC1_radA Rad51_ 43.8 15 0.00033 36.9 2.1 28 165-192 6-36 (235)
230 PF13555 AAA_29: P-loop contai 43.7 8.1 0.00018 31.9 0.1 15 178-192 26-40 (62)
231 PRK14723 flhF flagellar biosyn 43.7 15 0.00033 44.2 2.5 17 176-192 186-202 (767)
232 cd02021 GntK Gluconate kinase 43.5 9.8 0.00021 35.4 0.7 15 178-192 2-16 (150)
233 cd01850 CDC_Septin CDC/Septin. 43.5 9.7 0.00021 40.1 0.7 21 172-192 1-21 (276)
234 TIGR02639 ClpA ATP-dependent C 43.5 16 0.00035 43.9 2.6 37 156-192 459-501 (731)
235 COG2256 MGS1 ATPase related to 43.5 13 0.00028 41.5 1.6 37 155-191 28-64 (436)
236 smart00489 DEXDc3 DEAD-like he 43.4 12 0.00027 39.6 1.5 37 152-193 9-45 (289)
237 smart00488 DEXDc2 DEAD-like he 43.4 12 0.00027 39.6 1.5 37 152-193 9-45 (289)
238 PRK13729 conjugal transfer pil 43.3 1E+02 0.0022 35.2 8.6 45 445-489 76-120 (475)
239 cd01382 MYSc_type_VI Myosin mo 43.2 16 0.00034 44.0 2.4 36 157-192 72-108 (717)
240 TIGR01817 nifA Nif-specific re 43.2 12 0.00026 43.1 1.4 45 143-192 192-236 (534)
241 cd01377 MYSc_type_II Myosin mo 43.0 17 0.00037 43.5 2.7 37 156-192 71-108 (693)
242 PRK07261 topology modulation p 42.9 10 0.00022 36.8 0.7 15 178-192 3-17 (171)
243 PF02534 T4SS-DNA_transf: Type 42.8 17 0.00037 40.8 2.5 17 176-192 45-61 (469)
244 TIGR01389 recQ ATP-dependent D 42.2 16 0.00034 42.6 2.2 27 164-192 19-45 (591)
245 PRK08118 topology modulation p 42.0 11 0.00024 36.6 0.7 14 178-191 4-17 (167)
246 cd01127 TrwB Bacterial conjuga 41.8 9.1 0.0002 42.6 0.2 17 176-192 43-59 (410)
247 TIGR03158 cas3_cyano CRISPR-as 41.7 18 0.0004 39.4 2.5 26 167-192 6-31 (357)
248 cd01428 ADK Adenylate kinase ( 41.6 11 0.00024 36.4 0.8 15 178-192 2-16 (194)
249 PF07716 bZIP_2: Basic region 41.5 99 0.0021 24.4 6.0 31 443-473 23-53 (54)
250 PRK12724 flagellar biosynthesi 41.3 19 0.0004 40.7 2.5 18 176-193 224-241 (432)
251 PRK11664 ATP-dependent RNA hel 41.0 20 0.00043 43.7 2.9 33 158-192 5-37 (812)
252 PRK06067 flagellar accessory p 41.0 18 0.00038 36.7 2.1 28 165-192 12-42 (234)
253 PF10236 DAP3: Mitochondrial r 40.8 15 0.00033 39.4 1.7 23 171-193 19-41 (309)
254 PRK06995 flhF flagellar biosyn 40.8 9.9 0.00021 43.5 0.3 18 176-193 257-274 (484)
255 PF13476 AAA_23: AAA domain; P 40.6 9.9 0.00021 36.5 0.2 18 176-193 20-37 (202)
256 cd00464 SK Shikimate kinase (S 40.5 12 0.00026 34.7 0.7 16 177-192 1-16 (154)
257 TIGR01313 therm_gnt_kin carboh 40.5 10 0.00022 35.9 0.3 14 178-191 1-14 (163)
258 cd01379 MYSc_type_III Myosin m 40.3 19 0.00041 42.8 2.5 36 157-192 67-103 (653)
259 PF11932 DUF3450: Protein of u 40.3 1.1E+02 0.0024 31.7 7.9 37 446-482 57-93 (251)
260 PRK13767 ATP-dependent helicas 40.1 16 0.00034 44.9 1.9 27 164-192 38-64 (876)
261 TIGR03345 VI_ClpV1 type VI sec 40.1 20 0.00044 43.9 2.8 37 156-192 571-613 (852)
262 COG3879 Uncharacterized protei 40.0 1.6E+02 0.0035 30.9 8.8 61 415-479 24-84 (247)
263 KOG1803 DNA helicase [Replicat 39.8 21 0.00045 41.7 2.6 27 166-193 193-219 (649)
264 cd01386 MYSc_type_XVIII Myosin 39.7 19 0.00041 43.6 2.4 36 157-192 67-103 (767)
265 KOG1532 GTPase XAB1, interacts 39.7 32 0.00068 36.9 3.7 28 174-211 18-45 (366)
266 PRK10803 tol-pal system protei 39.6 1.3E+02 0.0028 31.6 8.3 42 448-489 57-98 (263)
267 cd02020 CMPK Cytidine monophos 39.4 13 0.00028 34.1 0.8 15 178-192 2-16 (147)
268 PF09726 Macoilin: Transmembra 39.3 80 0.0017 37.9 7.5 13 535-547 543-555 (697)
269 cd01858 NGP_1 NGP-1. Autoanti 39.3 20 0.00044 33.8 2.1 20 173-192 100-119 (157)
270 TIGR02746 TraC-F-type type-IV 39.2 10 0.00023 45.5 0.2 19 175-193 430-448 (797)
271 PRK05580 primosome assembly pr 39.2 18 0.00039 43.1 2.1 37 150-193 143-180 (679)
272 PTZ00110 helicase; Provisional 38.7 18 0.00038 42.0 1.9 27 164-192 158-184 (545)
273 TIGR02322 phosphon_PhnN phosph 38.7 11 0.00025 36.2 0.3 16 177-192 3-18 (179)
274 PF06005 DUF904: Protein of un 38.6 2.3E+02 0.0049 24.1 8.1 23 445-467 11-33 (72)
275 TIGR02903 spore_lon_C ATP-depe 38.6 20 0.00043 42.2 2.4 43 143-192 150-192 (615)
276 PRK09361 radB DNA repair and r 38.6 23 0.00049 35.5 2.5 28 165-192 10-40 (225)
277 CHL00176 ftsH cell division pr 38.5 16 0.00035 43.3 1.5 17 176-192 217-233 (638)
278 PRK11637 AmiB activator; Provi 38.5 2.4E+02 0.0052 31.6 10.8 8 602-609 328-335 (428)
279 PRK00295 hypothetical protein; 38.5 2.1E+02 0.0045 24.0 7.8 45 445-489 5-49 (68)
280 COG1125 OpuBA ABC-type proline 38.2 12 0.00025 39.7 0.3 30 397-434 185-214 (309)
281 TIGR02397 dnaX_nterm DNA polym 38.1 21 0.00045 38.2 2.2 35 155-192 18-53 (355)
282 CHL00081 chlI Mg-protoporyphyr 38.0 18 0.00039 39.8 1.7 53 142-212 12-64 (350)
283 cd01124 KaiC KaiC is a circadi 38.0 15 0.00032 35.3 0.9 15 178-192 2-16 (187)
284 PRK00736 hypothetical protein; 37.9 2.1E+02 0.0046 23.9 7.7 46 445-490 5-50 (68)
285 KOG0994 Extracellular matrix g 37.7 71 0.0015 40.1 6.6 120 355-484 1517-1637(1758)
286 COG0606 Predicted ATPase with 37.7 13 0.00027 42.4 0.5 36 165-205 190-225 (490)
287 PRK01172 ski2-like helicase; P 37.7 20 0.00044 42.4 2.3 26 164-191 28-53 (674)
288 COG0630 VirB11 Type IV secreto 37.5 11 0.00025 40.4 0.1 18 176-193 144-161 (312)
289 PRK08233 hypothetical protein; 37.5 14 0.0003 35.3 0.7 16 177-192 5-20 (182)
290 PRK04406 hypothetical protein; 37.3 2.7E+02 0.0057 23.9 8.7 46 444-489 10-55 (75)
291 CHL00181 cbbX CbbX; Provisiona 37.3 14 0.0003 39.3 0.7 15 178-192 62-76 (287)
292 TIGR03817 DECH_helic helicase/ 37.3 22 0.00047 42.9 2.4 27 164-192 42-68 (742)
293 KOG0330 ATP-dependent RNA heli 37.2 19 0.00041 40.1 1.7 27 164-192 89-115 (476)
294 TIGR03744 traC_PFL_4706 conjug 37.2 12 0.00026 46.1 0.2 20 174-193 474-493 (893)
295 TIGR01613 primase_Cterm phage/ 37.1 42 0.00091 35.6 4.3 29 164-192 62-93 (304)
296 PF11559 ADIP: Afadin- and alp 36.9 1.1E+02 0.0023 29.1 6.7 38 449-486 56-93 (151)
297 KOG1514 Origin recognition com 36.8 29 0.00063 41.3 3.2 36 158-193 403-440 (767)
298 PRK06217 hypothetical protein; 36.8 15 0.00031 35.9 0.7 15 178-192 4-18 (183)
299 PRK10917 ATP-dependent DNA hel 36.8 21 0.00045 42.6 2.1 40 151-193 261-300 (681)
300 PRK14963 DNA polymerase III su 36.7 16 0.00034 42.1 1.1 36 155-192 18-53 (504)
301 KOG0953 Mitochondrial RNA heli 36.7 22 0.00047 41.2 2.1 38 177-214 193-236 (700)
302 PF00931 NB-ARC: NB-ARC domain 36.7 28 0.0006 35.8 2.8 30 163-192 5-36 (287)
303 PRK14531 adenylate kinase; Pro 36.5 15 0.00033 35.9 0.8 16 177-192 4-19 (183)
304 PRK10820 DNA-binding transcrip 36.3 15 0.00034 42.2 1.0 46 142-192 199-244 (520)
305 TIGR03877 thermo_KaiC_1 KaiC d 36.3 25 0.00054 35.9 2.4 26 166-191 9-37 (237)
306 COG0419 SbcC ATPase involved i 36.3 22 0.00048 43.7 2.4 33 176-210 26-65 (908)
307 TIGR02880 cbbX_cfxQ probable R 36.2 13 0.00028 39.3 0.3 16 177-192 60-75 (284)
308 PHA02624 large T antigen; Prov 36.2 25 0.00054 41.4 2.6 27 166-192 420-448 (647)
309 PRK02119 hypothetical protein; 36.0 2.3E+02 0.005 24.1 7.8 45 445-489 9-53 (73)
310 PF00158 Sigma54_activat: Sigm 36.0 29 0.00062 33.9 2.6 31 261-291 92-122 (168)
311 PRK10867 signal recognition pa 35.9 29 0.00062 39.3 2.9 18 175-192 100-117 (433)
312 PF07693 KAP_NTPase: KAP famil 35.8 21 0.00045 37.6 1.8 29 164-192 9-37 (325)
313 PF00485 PRK: Phosphoribulokin 35.6 13 0.00028 36.7 0.1 15 178-192 2-16 (194)
314 PRK11131 ATP-dependent RNA hel 35.4 24 0.00053 44.9 2.5 33 158-192 74-106 (1294)
315 PF07946 DUF1682: Protein of u 35.3 4E+02 0.0087 28.8 11.5 64 397-460 213-281 (321)
316 PF04201 TPD52: Tumour protein 35.3 1.5E+02 0.0034 29.1 7.4 39 56-94 24-66 (162)
317 PRK04325 hypothetical protein; 35.2 2.4E+02 0.0052 24.0 7.8 45 445-489 9-53 (74)
318 PRK02793 phi X174 lysis protei 35.1 2.4E+02 0.0053 23.8 7.8 45 445-489 8-52 (72)
319 cd01394 radB RadB. The archaea 35.1 26 0.00057 34.8 2.3 28 165-192 6-36 (218)
320 cd02023 UMPK Uridine monophosp 35.1 13 0.00029 36.4 0.1 15 178-192 2-16 (198)
321 PRK12726 flagellar biosynthesi 35.1 14 0.00031 41.2 0.4 18 176-193 207-224 (407)
322 PF08477 Miro: Miro-like prote 34.9 18 0.00038 31.9 0.9 15 178-192 2-16 (119)
323 cd00632 Prefoldin_beta Prefold 34.6 1.4E+02 0.003 26.7 6.6 31 446-476 71-101 (105)
324 TIGR02173 cyt_kin_arch cytidyl 34.5 17 0.00036 34.3 0.7 16 177-192 2-17 (171)
325 PHA01747 putative ATP-dependen 34.4 16 0.00035 40.5 0.7 30 163-192 178-207 (425)
326 KOG2264 Exostosin EXT1L [Signa 34.4 89 0.0019 36.4 6.3 10 332-341 5-14 (907)
327 PRK14729 miaA tRNA delta(2)-is 34.3 18 0.0004 38.8 1.1 45 177-243 6-50 (300)
328 cd01983 Fer4_NifH The Fer4_Nif 34.3 15 0.00034 30.3 0.4 16 178-193 2-17 (99)
329 PRK14532 adenylate kinase; Pro 34.3 18 0.00039 35.1 0.9 16 177-192 2-17 (188)
330 TIGR01360 aden_kin_iso1 adenyl 34.2 17 0.00037 34.8 0.8 16 177-192 5-20 (188)
331 PRK09270 nucleoside triphospha 34.0 30 0.00066 35.0 2.6 20 173-192 31-50 (229)
332 KOG2228 Origin recognition com 34.0 28 0.00061 38.2 2.4 73 154-229 31-119 (408)
333 PRK14961 DNA polymerase III su 33.9 25 0.00054 38.5 2.0 19 174-192 37-55 (363)
334 PF05377 FlaC_arch: Flagella a 33.8 2E+02 0.0043 23.4 6.5 37 446-482 8-44 (55)
335 KOG0729 26S proteasome regulat 33.5 20 0.00044 38.1 1.2 40 46-85 23-62 (435)
336 PF12718 Tropomyosin_1: Tropom 33.5 2.7E+02 0.0058 26.6 8.7 28 450-477 26-53 (143)
337 COG5019 CDC3 Septin family pro 33.4 23 0.00049 39.1 1.6 17 173-189 21-37 (373)
338 PF10412 TrwB_AAD_bind: Type I 33.4 13 0.00028 41.1 -0.2 18 176-193 16-33 (386)
339 PRK14721 flhF flagellar biosyn 33.3 16 0.00034 41.2 0.3 18 175-192 191-208 (420)
340 KOG0739 AAA+-type ATPase [Post 33.3 18 0.00039 39.1 0.8 73 145-217 131-225 (439)
341 cd01853 Toc34_like Toc34-like 33.3 18 0.00039 37.6 0.8 40 151-192 9-48 (249)
342 PF06698 DUF1192: Protein of u 33.3 1.5E+02 0.0032 24.5 5.8 30 62-91 22-51 (59)
343 PTZ00014 myosin-A; Provisional 33.2 31 0.00066 42.2 2.8 36 157-192 164-200 (821)
344 KOG1853 LIS1-interacting prote 33.2 1.8E+02 0.0038 30.7 7.8 35 438-472 45-79 (333)
345 PRK10803 tol-pal system protei 33.1 1.3E+02 0.0029 31.6 7.2 45 443-487 59-103 (263)
346 TIGR03346 chaperone_ClpB ATP-d 33.1 30 0.00066 42.3 2.7 42 147-192 565-612 (852)
347 PRK15429 formate hydrogenlyase 33.0 21 0.00046 42.4 1.4 44 144-192 373-416 (686)
348 TIGR00231 small_GTP small GTP- 33.0 15 0.00033 32.7 0.2 16 177-192 3-18 (161)
349 cd00820 PEPCK_HprK Phosphoenol 33.0 17 0.00036 33.3 0.4 16 177-192 17-32 (107)
350 cd01393 recA_like RecA is a b 32.9 32 0.0007 34.2 2.5 28 165-192 6-36 (226)
351 CHL00195 ycf46 Ycf46; Provisio 32.8 16 0.00035 41.9 0.4 18 175-192 259-276 (489)
352 PF13118 DUF3972: Protein of u 32.7 2.5E+02 0.0054 26.6 8.0 48 443-490 76-123 (126)
353 PRK14951 DNA polymerase III su 32.6 23 0.00049 41.8 1.6 41 145-192 14-55 (618)
354 KOG4005 Transcription factor X 32.6 2.4E+02 0.0051 29.6 8.5 32 440-471 85-116 (292)
355 KOG0976 Rho/Rac1-interacting s 32.4 1.6E+02 0.0034 35.8 8.0 57 437-493 98-154 (1265)
356 TIGR01425 SRP54_euk signal rec 32.3 32 0.0007 38.8 2.6 18 175-192 100-117 (429)
357 PF12774 AAA_6: Hydrolytic ATP 32.3 33 0.00072 35.3 2.5 45 176-220 33-88 (231)
358 PRK00300 gmk guanylate kinase; 32.1 17 0.00037 35.7 0.3 17 176-192 6-22 (205)
359 PF07334 IFP_35_N: Interferon- 32.0 92 0.002 26.9 4.6 29 454-482 2-30 (76)
360 cd02025 PanK Pantothenate kina 32.0 13 0.00029 37.8 -0.5 13 180-192 4-16 (220)
361 PRK04040 adenylate kinase; Pro 31.8 19 0.00042 35.7 0.7 16 177-192 4-19 (188)
362 PRK06851 hypothetical protein; 31.7 31 0.00066 38.2 2.3 41 148-192 7-47 (367)
363 TIGR00929 VirB4_CagE type IV s 31.6 17 0.00037 43.6 0.3 18 175-192 434-451 (785)
364 PRK06762 hypothetical protein; 31.4 21 0.00046 33.8 0.9 15 177-191 4-18 (166)
365 PF15290 Syntaphilin: Golgi-lo 31.3 2.2E+02 0.0047 30.5 8.2 9 460-468 90-98 (305)
366 PF00025 Arf: ADP-ribosylation 31.1 33 0.00072 33.1 2.2 28 165-192 3-31 (175)
367 PF08614 ATG16: Autophagy prot 31.1 1.1E+02 0.0025 30.4 6.1 33 450-482 114-146 (194)
368 TIGR01970 DEAH_box_HrpB ATP-de 31.1 32 0.0007 42.0 2.5 27 164-192 8-34 (819)
369 TIGR03881 KaiC_arch_4 KaiC dom 31.1 32 0.00069 34.5 2.1 27 166-192 8-37 (229)
370 TIGR01010 BexC_CtrB_KpsE polys 31.0 2.5E+02 0.0054 30.5 9.2 68 394-466 126-198 (362)
371 PRK05342 clpX ATP-dependent pr 31.0 33 0.00072 38.5 2.4 18 175-192 108-125 (412)
372 PRK13922 rod shape-determining 31.0 1.3E+02 0.0028 31.4 6.8 36 447-482 71-106 (276)
373 TIGR00643 recG ATP-dependent D 30.9 31 0.00067 40.7 2.3 39 151-192 235-273 (630)
374 COG3074 Uncharacterized protei 30.9 3.4E+02 0.0074 23.2 8.2 14 451-464 24-37 (79)
375 PRK14530 adenylate kinase; Pro 30.8 21 0.00045 35.8 0.7 16 177-192 5-20 (215)
376 PRK14527 adenylate kinase; Pro 30.6 22 0.00049 34.8 0.9 35 176-210 7-41 (191)
377 TIGR03117 cas_csf4 CRISPR-asso 30.5 27 0.00059 41.3 1.7 32 156-192 2-33 (636)
378 PF04548 AIG1: AIG1 family; I 30.4 19 0.00042 36.1 0.4 16 177-192 2-17 (212)
379 PRK13889 conjugal transfer rel 30.2 26 0.00056 43.6 1.5 28 164-192 352-379 (988)
380 PRK03839 putative kinase; Prov 30.1 22 0.00047 34.4 0.7 14 178-191 3-16 (180)
381 PRK10246 exonuclease subunit S 30.1 29 0.00062 43.5 1.9 17 176-192 31-47 (1047)
382 TIGR01351 adk adenylate kinase 30.0 22 0.00048 35.4 0.8 35 178-212 2-36 (210)
383 PF06156 DUF972: Protein of un 30.0 3.9E+02 0.0084 24.5 8.7 28 446-473 9-36 (107)
384 PF08232 Striatin: Striatin fa 29.8 1.1E+02 0.0025 28.9 5.5 51 55-106 20-77 (134)
385 KOG0652 26S proteasome regulat 29.7 24 0.00051 37.5 0.9 15 177-191 207-221 (424)
386 PRK14970 DNA polymerase III su 29.7 30 0.00064 37.6 1.8 27 166-192 29-56 (367)
387 PRK10078 ribose 1,5-bisphospho 29.6 20 0.00042 35.1 0.3 16 177-192 4-19 (186)
388 COG0467 RAD55 RecA-superfamily 29.6 33 0.00071 35.4 2.0 26 167-192 12-40 (260)
389 KOG1547 Septin CDC10 and relat 29.6 43 0.00094 35.2 2.7 29 164-192 34-63 (336)
390 PF10923 DUF2791: P-loop Domai 29.5 38 0.00081 38.2 2.5 34 159-192 33-66 (416)
391 COG1136 SalX ABC-type antimicr 29.3 19 0.00041 37.2 0.2 15 178-192 34-48 (226)
392 PF14532 Sigma54_activ_2: Sigm 29.3 24 0.00051 32.8 0.8 20 173-192 19-38 (138)
393 TIGR02639 ClpA ATP-dependent C 29.2 26 0.00056 42.1 1.3 32 163-194 191-222 (731)
394 PRK10865 protein disaggregatio 29.2 20 0.00043 44.0 0.3 32 163-194 187-218 (857)
395 TIGR02894 DNA_bind_RsfA transc 29.2 4.6E+02 0.0099 25.9 9.5 40 450-489 109-148 (161)
396 KOG0971 Microtubule-associated 29.1 4.8E+02 0.01 32.5 11.3 48 459-506 1001-1048(1243)
397 TIGR02236 recomb_radA DNA repa 29.1 39 0.00084 35.9 2.5 28 165-192 82-112 (310)
398 TIGR03263 guanyl_kin guanylate 29.1 27 0.00058 33.5 1.2 16 177-192 3-18 (180)
399 TIGR00219 mreC rod shape-deter 29.1 1.6E+02 0.0036 31.3 7.1 51 62-113 74-124 (283)
400 PRK11608 pspF phage shock prot 29.0 30 0.00066 37.3 1.7 42 146-192 5-46 (326)
401 COG1126 GlnQ ABC-type polar am 29.0 20 0.00044 37.0 0.3 14 179-192 32-45 (240)
402 COG4096 HsdR Type I site-speci 29.0 47 0.001 40.3 3.3 36 157-193 166-203 (875)
403 PF06005 DUF904: Protein of un 28.9 3.6E+02 0.0079 22.9 8.9 27 447-473 20-46 (72)
404 TIGR02894 DNA_bind_RsfA transc 28.9 2.7E+02 0.0058 27.5 7.8 32 450-481 102-133 (161)
405 KOG0745 Putative ATP-dependent 28.8 25 0.00054 39.8 0.9 16 177-192 228-243 (564)
406 KOG0343 RNA Helicase [RNA proc 28.8 44 0.00095 38.9 2.9 30 162-193 94-124 (758)
407 KOG0348 ATP-dependent RNA heli 28.7 32 0.0007 39.8 1.8 26 164-191 165-190 (708)
408 PRK14962 DNA polymerase III su 28.6 34 0.00075 39.0 2.1 23 170-192 30-53 (472)
409 TIGR02767 TraG-Ti Ti-type conj 28.6 27 0.00058 41.3 1.2 17 176-192 212-228 (623)
410 PRK14957 DNA polymerase III su 28.6 29 0.00062 40.4 1.4 16 177-192 40-55 (546)
411 PHA02774 E1; Provisional 28.5 40 0.00087 39.6 2.6 28 165-192 422-451 (613)
412 cd03274 ABC_SMC4_euk Eukaryoti 28.4 22 0.00047 35.9 0.4 16 177-192 27-42 (212)
413 PRK00888 ftsB cell division pr 28.3 2.1E+02 0.0047 25.9 6.8 27 446-472 35-61 (105)
414 cd02027 APSK Adenosine 5'-phos 28.3 24 0.00053 33.4 0.7 15 178-192 2-16 (149)
415 PRK15455 PrkA family serine pr 28.2 36 0.00079 40.0 2.1 44 142-189 70-117 (644)
416 TIGR03185 DNA_S_dndD DNA sulfu 28.2 1.2E+02 0.0025 36.0 6.5 48 446-493 210-257 (650)
417 PF04201 TPD52: Tumour protein 28.1 1.7E+02 0.0037 28.8 6.4 37 446-482 30-66 (162)
418 COG3883 Uncharacterized protei 28.1 2.1E+02 0.0045 30.4 7.5 36 449-484 70-105 (265)
419 PF08826 DMPK_coil: DMPK coile 28.1 2.1E+02 0.0045 23.7 5.9 28 450-477 30-57 (61)
420 PF12709 Kinetocho_Slk19: Cent 27.9 1.8E+02 0.0038 25.9 5.8 26 445-470 49-74 (87)
421 COG1382 GimC Prefoldin, chaper 27.8 2.8E+02 0.0061 26.0 7.5 42 443-484 68-109 (119)
422 PF04977 DivIC: Septum formati 27.8 1.5E+02 0.0033 24.4 5.4 26 446-471 25-50 (80)
423 cd00071 GMPK Guanosine monopho 27.8 28 0.0006 32.6 1.0 15 178-192 2-16 (137)
424 TIGR01587 cas3_core CRISPR-ass 27.8 26 0.00057 37.6 0.9 15 178-192 2-16 (358)
425 PRK13721 conjugal transfer ATP 27.7 21 0.00046 43.5 0.2 18 175-192 449-466 (844)
426 PRK00279 adk adenylate kinase; 27.7 26 0.00056 35.1 0.8 15 177-191 2-16 (215)
427 KOG0951 RNA helicase BRR2, DEA 27.6 76 0.0016 40.4 4.7 32 160-191 310-341 (1674)
428 TIGR01074 rep ATP-dependent DN 27.6 25 0.00054 41.5 0.7 20 175-194 14-33 (664)
429 PF07926 TPR_MLP1_2: TPR/MLP1/ 27.5 1.7E+02 0.0036 27.4 6.1 42 60-101 90-131 (132)
430 PRK15424 propionate catabolism 27.4 40 0.00087 39.2 2.4 44 144-192 216-259 (538)
431 PRK00846 hypothetical protein; 27.4 4E+02 0.0088 23.1 7.8 47 445-491 13-59 (77)
432 TIGR02338 gimC_beta prefoldin, 27.3 2.4E+02 0.0052 25.5 6.9 35 449-483 71-105 (110)
433 PRK12727 flagellar biosynthesi 27.3 23 0.00049 41.2 0.3 18 176-193 351-368 (559)
434 TIGR03346 chaperone_ClpB ATP-d 27.3 23 0.0005 43.3 0.4 32 163-194 182-213 (852)
435 PF01926 MMR_HSR1: 50S ribosom 27.3 20 0.00043 31.8 -0.1 15 178-192 2-16 (116)
436 COG0324 MiaA tRNA delta(2)-iso 27.2 29 0.00063 37.5 1.1 47 177-244 5-51 (308)
437 PRK09401 reverse gyrase; Revie 27.2 41 0.00089 42.8 2.5 25 165-191 87-111 (1176)
438 TIGR02688 conserved hypothetic 27.2 46 0.001 37.7 2.7 46 166-214 202-251 (449)
439 cd03240 ABC_Rad50 The catalyti 27.0 23 0.0005 35.4 0.3 17 177-193 24-40 (204)
440 KOG0742 AAA+-type ATPase [Post 27.0 29 0.00063 39.1 1.1 14 177-190 386-399 (630)
441 TIGR00382 clpX endopeptidase C 27.0 27 0.00059 39.2 0.8 17 176-192 117-133 (413)
442 CHL00095 clpC Clp protease ATP 26.9 44 0.00094 40.8 2.7 37 156-192 514-556 (821)
443 TIGR01650 PD_CobS cobaltochela 26.9 39 0.00085 36.8 2.0 42 149-192 38-81 (327)
444 PF01745 IPT: Isopentenyl tran 26.9 25 0.00055 36.3 0.6 15 178-192 4-18 (233)
445 PF07926 TPR_MLP1_2: TPR/MLP1/ 26.9 2.6E+02 0.0056 26.1 7.3 44 450-493 64-107 (132)
446 TIGR03878 thermo_KaiC_2 KaiC d 26.7 42 0.0009 35.0 2.1 17 175-191 36-52 (259)
447 PRK13873 conjugal transfer ATP 26.7 25 0.00054 42.8 0.5 16 177-192 443-458 (811)
448 TIGR01243 CDC48 AAA family ATP 26.6 24 0.00052 42.3 0.4 17 176-192 213-229 (733)
449 PRK06305 DNA polymerase III su 26.5 32 0.00068 39.0 1.3 41 145-192 15-56 (451)
450 PRK00091 miaA tRNA delta(2)-is 26.5 29 0.00063 37.4 1.0 15 177-191 6-20 (307)
451 PRK13853 type IV secretion sys 26.5 21 0.00046 43.2 -0.1 17 176-192 427-443 (789)
452 TIGR00959 ffh signal recogniti 26.5 29 0.00062 39.2 0.9 19 175-193 99-117 (428)
453 TIGR02329 propionate_PrpR prop 26.4 41 0.00088 39.0 2.2 45 143-192 208-252 (526)
454 COG1660 Predicted P-loop-conta 26.4 82 0.0018 33.5 4.1 35 157-192 219-258 (286)
455 PF05377 FlaC_arch: Flagella a 26.3 3.6E+02 0.0078 22.0 7.0 36 447-482 2-37 (55)
456 TIGR00235 udk uridine kinase. 26.2 28 0.0006 34.6 0.7 17 176-192 7-23 (207)
457 TIGR02768 TraA_Ti Ti-type conj 26.2 34 0.00074 41.3 1.6 29 164-193 358-386 (744)
458 COG1579 Zn-ribbon protein, pos 26.2 3.6E+02 0.0078 28.3 8.7 75 432-509 83-157 (239)
459 PF04156 IncA: IncA protein; 26.2 3.5E+02 0.0075 26.5 8.5 21 451-471 87-107 (191)
460 PRK11388 DNA-binding transcrip 26.1 31 0.00068 40.5 1.2 45 143-192 321-365 (638)
461 cd03115 SRP The signal recogni 26.1 25 0.00054 33.7 0.3 15 178-192 3-17 (173)
462 PLN02200 adenylate kinase fami 26.0 30 0.00065 35.6 0.9 36 176-211 44-79 (234)
463 COG1122 CbiO ABC-type cobalt t 25.9 30 0.00064 35.8 0.9 17 176-192 31-47 (235)
464 cd03279 ABC_sbcCD SbcCD and ot 25.8 26 0.00056 35.1 0.4 17 176-192 29-45 (213)
465 TIGR01967 DEAH_box_HrpA ATP-de 25.8 51 0.0011 42.2 3.0 32 159-192 68-99 (1283)
466 PHA02530 pseT polynucleotide k 25.7 30 0.00064 36.2 0.8 17 176-192 3-19 (300)
467 TIGR01447 recD exodeoxyribonuc 25.7 34 0.00074 40.2 1.4 27 165-193 152-178 (586)
468 PF01166 TSC22: TSC-22/dip/bun 25.7 1.3E+02 0.0029 24.7 4.3 20 446-465 22-41 (59)
469 PF08317 Spc7: Spc7 kinetochor 25.6 1.6E+02 0.0036 31.8 6.5 66 442-507 227-292 (325)
470 PRK02496 adk adenylate kinase; 25.6 30 0.00064 33.5 0.8 15 178-192 4-18 (184)
471 PF13094 CENP-Q: CENP-Q, a CEN 25.5 70 0.0015 30.8 3.3 51 54-105 21-71 (160)
472 TIGR02338 gimC_beta prefoldin, 25.5 2.9E+02 0.0063 24.9 7.2 36 443-478 72-107 (110)
473 TIGR02759 TraD_Ftype type IV c 25.5 24 0.00053 41.2 0.1 16 177-192 178-193 (566)
474 PF11853 DUF3373: Protein of u 25.3 97 0.0021 35.6 4.8 19 446-464 32-50 (489)
475 PRK15422 septal ring assembly 25.3 4.4E+02 0.0095 23.0 7.6 11 486-496 55-65 (79)
476 PRK10689 transcription-repair 25.3 43 0.00093 42.5 2.2 18 175-192 621-638 (1147)
477 TIGR02655 circ_KaiC circadian 25.2 43 0.00092 38.2 2.0 27 165-191 8-37 (484)
478 PRK14701 reverse gyrase; Provi 25.2 57 0.0012 42.9 3.3 25 164-190 85-109 (1638)
479 TIGR03238 dnd_assoc_3 dnd syst 25.2 36 0.00077 39.1 1.4 31 163-193 14-50 (504)
480 COG4942 Membrane-bound metallo 25.2 5.3E+02 0.012 29.2 10.4 48 446-493 172-223 (420)
481 PRK11034 clpA ATP-dependent Cl 25.1 35 0.00075 41.3 1.4 31 164-194 196-226 (758)
482 PRK13891 conjugal transfer pro 25.1 27 0.00059 42.7 0.5 18 175-192 488-505 (852)
483 TIGR00174 miaA tRNA isopenteny 25.1 32 0.0007 36.7 1.0 15 178-192 2-16 (287)
484 PRK13850 type IV secretion sys 25.0 37 0.0008 40.5 1.5 20 173-192 137-156 (670)
485 PRK14953 DNA polymerase III su 25.0 39 0.00086 38.7 1.7 17 176-192 39-55 (486)
486 PRK04296 thymidine kinase; Pro 24.9 21 0.00045 35.3 -0.4 17 177-193 4-20 (190)
487 PRK05022 anaerobic nitric oxid 24.9 34 0.00073 39.2 1.2 43 145-192 185-227 (509)
488 COG0563 Adk Adenylate kinase a 24.9 32 0.00069 34.0 0.8 14 178-191 3-16 (178)
489 PF04977 DivIC: Septum formati 24.8 1.9E+02 0.004 23.9 5.4 32 447-478 19-50 (80)
490 PRK07667 uridine kinase; Provi 24.8 51 0.0011 32.6 2.3 21 172-192 14-34 (193)
491 PRK14528 adenylate kinase; Pro 24.8 31 0.00068 33.9 0.8 15 178-192 4-18 (186)
492 PTZ00301 uridine kinase; Provi 24.8 25 0.00054 35.7 0.1 15 178-192 6-20 (210)
493 PRK05480 uridine/cytidine kina 24.7 30 0.00065 34.3 0.6 18 175-192 6-23 (209)
494 PRK13897 type IV secretion sys 24.7 47 0.001 39.2 2.2 27 398-424 364-390 (606)
495 PRK13729 conjugal transfer pil 24.7 2E+02 0.0044 32.9 7.1 13 562-574 191-203 (475)
496 cd00227 CPT Chloramphenicol (C 24.6 33 0.00071 33.1 0.9 16 177-192 4-19 (175)
497 cd02019 NK Nucleoside/nucleoti 24.6 36 0.00078 27.9 1.0 15 178-192 2-16 (69)
498 PRK14956 DNA polymerase III su 24.6 38 0.00082 38.8 1.5 42 148-191 15-56 (484)
499 PRK04301 radA DNA repair and r 24.5 54 0.0012 35.1 2.6 25 165-189 89-116 (317)
500 TIGR03880 KaiC_arch_3 KaiC dom 24.5 50 0.0011 33.1 2.2 25 165-189 3-30 (224)
No 1
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-90 Score=779.69 Aligned_cols=458 Identities=31% Similarity=0.475 Sum_probs=374.8
Q ss_pred CCEEEEEEeCCCCcccC-CcccCcEEecCCEEEEEeCC-c--eEEEEeceeecC-------CCCchhhHhhh-HHHHHHh
Q 006540 103 GCIRVFCRVRSFLVTGR-RVIHEPVLTELEKVVVRSGG-S--KKEFGFDKVFNQ-------AASQEDVFVEV-EPILRSA 170 (641)
Q Consensus 103 G~IrV~~RvRP~~~~e~-~~~~~~v~~~~~~v~v~~~~-~--~~~F~FD~VF~~-------~atQ~eVf~~v-~plV~~v 170 (641)
.+|.|.|||||++.-|. ....+++.+.+++.++.... . ...|+||+.||. .++|..||+++ .++|+.+
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~A 83 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHA 83 (1221)
T ss_pred CceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHH
Confidence 47999999999998664 34566777777777776433 2 266999999984 47899999998 9999999
Q ss_pred hcCcceeEEecccCCCCcceeecCCC--CCCCchhHHHHHHHHHHhcC--CCceEEEEEeEEEEecceeeecCC-CCCcc
Q 006540 171 LDGHNVCVLAYGQTGTGKTFTMDGTS--DQPGIVPRALEELFRQAALD--NSSSVTFSMSMLEVYMGSVRDLLA-PKPVF 245 (641)
Q Consensus 171 l~G~N~~IfAYGqTGSGKTyTM~G~~--~~~GIIpRal~~LF~~~~~~--~~~~~~v~vS~lEIYnE~V~DLL~-~~~~~ 245 (641)
++|||+||||||||||||||||+|.. +++|||||+|++||.++... .+..|.|.|||+|||||+|+|||+ |.+
T Consensus 84 fEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~-- 161 (1221)
T KOG0245|consen 84 FEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKS-- 161 (1221)
T ss_pred hcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCC--
Confidence 99999999999999999999999987 89999999999999987643 478999999999999999999998 433
Q ss_pred chhhhhcccceeeEeCCCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecCCCC--
Q 006540 246 KAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALE-- 323 (641)
Q Consensus 246 ~~~~~~~~~~L~i~ed~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~-- 323 (641)
+.+|++|+++.-|+||++|+.+.|+|+.|+..||+.|++.|++|+|+||+.|||||+||+|.+.+......
T Consensus 162 -------kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~ 234 (1221)
T KOG0245|consen 162 -------KGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTG 234 (1221)
T ss_pred -------CCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCC
Confidence 45799999999999999999999999999999999999999999999999999999999999988643322
Q ss_pred -CceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHHHHHHHHHHHHHHhCC-------CCccCCCCccchhhhcccC
Q 006540 324 -AKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKR-------GHVPYRNSKLTQILRDSLG 395 (641)
Q Consensus 324 -~~~~~skL~lVDLAGSEr~~kt~a~g~rlkE~~~INkSL~aLg~VI~aL~~~~-------~hIPYRdSKLT~LLqdsLg 395 (641)
....+|+|+|||||||||+..+|+.|+|||||.+|||||.+||.||+||++.+ .+||||||.|||||+++||
T Consensus 235 l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLG 314 (1221)
T KOG0245|consen 235 LDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLG 314 (1221)
T ss_pred CcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcC
Confidence 36788999999999999999999999999999999999999999999997533 4899999999999999999
Q ss_pred CCcccceEEecCCCCCCHHHhHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHH----------------
Q 006540 396 DGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSEDLKKRREIRMAELEEDMREAEA---------------- 459 (641)
Q Consensus 396 GnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~~~~~~~~~~~~~i~~L~~el~~l~~---------------- 459 (641)
|||||+||+++||++.||+|||+|||||.|||+|++++.+|+|++. +.|.+|++|+..|+.
T Consensus 315 GNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpna---KLIRELreEv~rLksll~~~~~~~~~~~~~p 391 (1221)
T KOG0245|consen 315 GNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNA---KLIRELREEVARLKSLLRAQGLGDIAVEGSP 391 (1221)
T ss_pred CcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccH---HHHHHHHHHHHHHHHHHhccccccccccCCc
Confidence 9999999999999999999999999999999999999999999876 357777777776654
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh-----------hccC--C--CchhhHHHhhcCcccccccc
Q 006540 460 -------ECQNVRNQIKEVESLLSEKKKLFSAACQSLEDE-----------EKSF--V--SPKENLKEAAETPKASKNVT 517 (641)
Q Consensus 460 -------e~~~l~~qi~~~e~~~~E~~~~~~~~~~~l~~e-----------~~~~--~--~~~~~l~~~~~~~~~~~~~~ 517 (641)
++..+++++++-|..+.|+.+.|++.....++- +.++ + ....+|.++++||..++..+
T Consensus 392 ~~~~~~~~~e~~~~~L~E~Ek~mael~etW~EKl~~aEair~e~~~~L~emGva~~~D~~kk~phLVNLneDPllSe~Ll 471 (1221)
T KOG0245|consen 392 SALLSQPEIEELRERLQETEKIMAELNETWEEKLREAEAIRMEREALLAEMGVAVREDGGKKTPHLVNLNEDPLLSECLL 471 (1221)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCceeeecCCccCcceeccCCCchhhccEE
Confidence 366778888888888888777776544332211 1111 2 24579999999999988766
Q ss_pred c----------cccCCCCCcccchhhHhHhhhhhhhhh-----------------hhccc----ccccccccccCCCCcc
Q 006540 518 K----------RSVSNSVPRFMTSTVASRQRKNAAEKE-----------------ISIRA----RNLITGSRSSAQFSCS 566 (641)
Q Consensus 518 ~----------r~~~~~~p~~~~~~~~s~~~~~~~e~e-----------------~~~~~----~~~~~~~~~~~~~~~~ 566 (641)
. |...++-|.+..+...-+.-|=..+.+ |..+. .-++++ .-+.++|.
T Consensus 472 Y~ikeG~TrVG~~~a~~~~DI~LsG~~I~~qHC~i~~~~g~~~vtl~p~e~aetyVNGk~v~ep~qL~~G--dRiilG~~ 549 (1221)
T KOG0245|consen 472 YYIKEGETRVGREDASSRQDIVLSGQLIREQHCSIRNEGGNDVVTLEPCEDAETYVNGKLVTEPTQLRSG--DRIILGGN 549 (1221)
T ss_pred EEeccCceecCCCCcccCCceEecchhhhhhceEEEecCCCceEEeccCCccceeEccEEcCCcceeccC--CEEEEcCc
Confidence 5 334466666555554444433221111 11121 122333 33678888
Q ss_pred cccchhhh
Q 006540 567 QSLSFLDI 574 (641)
Q Consensus 567 ~~~~~~~~ 574 (641)
-.|.|.+-
T Consensus 550 H~frfn~P 557 (1221)
T KOG0245|consen 550 HVFRFNHP 557 (1221)
T ss_pred eeEEecCH
Confidence 88888775
No 2
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.2e-89 Score=756.10 Aligned_cols=350 Identities=39% Similarity=0.580 Sum_probs=308.0
Q ss_pred CCEEEEEEeCCCCcccCC-cccCcEEecCCE--EEEEeC-----CceEEEEeceeecCCCCchhhHhhh-HHHHHHhhcC
Q 006540 103 GCIRVFCRVRSFLVTGRR-VIHEPVLTELEK--VVVRSG-----GSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDG 173 (641)
Q Consensus 103 G~IrV~~RvRP~~~~e~~-~~~~~v~~~~~~--v~v~~~-----~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~~vl~G 173 (641)
-+|+|++|+||+...+.. ....++.+++.. +.+..+ +..+.|+||.||+++++|++||..+ .|+|++|++|
T Consensus 5 ~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~G 84 (574)
T KOG4280|consen 5 CKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLEG 84 (574)
T ss_pred cceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhcc
Confidence 578999999999885433 334455555433 344322 2357899999999999999999987 9999999999
Q ss_pred cceeEEecccCCCCcceeecCC-CCCCCchhHHHHHHHHHHhcCC-CceEEEEEeEEEEecceeeecCCCCCccchhhhh
Q 006540 174 HNVCVLAYGQTGTGKTFTMDGT-SDQPGIVPRALEELFRQAALDN-SSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAA 251 (641)
Q Consensus 174 ~N~~IfAYGqTGSGKTyTM~G~-~~~~GIIpRal~~LF~~~~~~~-~~~~~v~vS~lEIYnE~V~DLL~~~~~~~~~~~~ 251 (641)
||+||||||||||||||||+|+ ++..|||||++++||..+.... ...|.|+|||+|||||.|+|||++.+.
T Consensus 85 yNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~------- 157 (574)
T KOG4280|consen 85 YNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNP------- 157 (574)
T ss_pred cCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCc-------
Confidence 9999999999999999999999 6778999999999999988765 447999999999999999999998763
Q ss_pred cccceeeEeCCCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecC--CCCCceEEe
Q 006540 252 TRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGD--ALEAKTEVS 329 (641)
Q Consensus 252 ~~~~L~i~ed~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~--~~~~~~~~s 329 (641)
..|.|+++++.||||+|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|+.... ........|
T Consensus 158 --~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~ 235 (574)
T KOG4280|consen 158 --KGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSS 235 (574)
T ss_pred --CCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccc
Confidence 3689999999999999999999999999999999999999999999999999999999999998332 122566789
Q ss_pred EeEEEecCCCccccccCCCcchhhhhhhhhHHHHHHHHHHHHHHhCCC-CccCCCCccchhhhcccCCCcccceEEecCC
Q 006540 330 KLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRG-HVPYRNSKLTQILRDSLGDGSKVLMLVHASP 408 (641)
Q Consensus 330 kL~lVDLAGSEr~~kt~a~g~rlkE~~~INkSL~aLg~VI~aL~~~~~-hIPYRdSKLT~LLqdsLgGnskT~mI~~VSP 408 (641)
+|+|||||||||..++|+.|++++||.+||+||++||+||.||.++.. ||||||||||+||||||||||||+||+||+|
T Consensus 236 rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp 315 (574)
T KOG4280|consen 236 KLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSP 315 (574)
T ss_pred eeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCc
Confidence 999999999999999999999999999999999999999999998876 9999999999999999999999999999999
Q ss_pred CCCCHHHhHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 409 CEEDVGETICSLSFAKRARGIESNRELSEDLKKRREIRMAELEEDMREAEAECQNV 464 (641)
Q Consensus 409 ~~~~~~ETlsTLrFA~rar~I~~~~~~~~~~~~~~~~~i~~L~~el~~l~~e~~~l 464 (641)
+..+++||++||+||+||+.|+|.|.+|++++. ..+.+|+++|..|+.++...
T Consensus 316 ~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~---~~~~~lq~ei~~Lk~~l~~~ 368 (574)
T KOG4280|consen 316 SSDNYEETLSTLRFAQRAKAIKNKPVINEDPKD---ALLRELQEEIERLKKELDPG 368 (574)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccccccCCcch---hhHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999873 23445555555555555443
No 3
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.6e-88 Score=773.15 Aligned_cols=332 Identities=37% Similarity=0.584 Sum_probs=296.1
Q ss_pred CCCEEEEEEeCCCCcccCCc-ccCcEEecC--CEEEEEeC--Cc--eEEEEeceeecCCCCchhhHhh-hHHHHHHhhcC
Q 006540 102 KGCIRVFCRVRSFLVTGRRV-IHEPVLTEL--EKVVVRSG--GS--KKEFGFDKVFNQAASQEDVFVE-VEPILRSALDG 173 (641)
Q Consensus 102 kG~IrV~~RvRP~~~~e~~~-~~~~v~~~~--~~v~v~~~--~~--~~~F~FD~VF~~~atQ~eVf~~-v~plV~~vl~G 173 (641)
--||+|++||||++..|... .+.+|.+++ ..|.+... +. .+.|+||+||+|.+.|.+||+. |.|+|..|+.|
T Consensus 48 ~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~G 127 (1041)
T KOG0243|consen 48 EVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEG 127 (1041)
T ss_pred CCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhcc
Confidence 36999999999999877543 344455544 34777654 33 5899999999999999999987 49999999999
Q ss_pred cceeEEecccCCCCcceeecC--------CCCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCCcc
Q 006540 174 HNVCVLAYGQTGTGKTFTMDG--------TSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVF 245 (641)
Q Consensus 174 ~N~~IfAYGqTGSGKTyTM~G--------~~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~V~DLL~~~~~~ 245 (641)
||||||||||||+||||||+| .++++||||||+.+||+.+...+ .+|.|+|||+|+|||.|+|||++....
T Consensus 128 yNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~-~EYsvKVSfLELYNEEl~DLLa~~~~~ 206 (1041)
T KOG0243|consen 128 YNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG-AEYSVKVSFLELYNEELTDLLASEDTS 206 (1041)
T ss_pred CCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC-CeEEEEEEehhhhhHHHHHhcCCcccc
Confidence 999999999999999999999 56789999999999999988765 899999999999999999999987652
Q ss_pred chhhhhcccceeeEe-----CCCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecC
Q 006540 246 KAYEAATRCNLNIQT-----DAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGD 320 (641)
Q Consensus 246 ~~~~~~~~~~L~i~e-----d~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~ 320 (641)
. ..+.+.. +.+|+|+|.|+.++.|.++.|++.+|.+|...|++|+|.||++|||||+||+|+|.....
T Consensus 207 ~-------~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~ 279 (1041)
T KOG0243|consen 207 D-------KKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKEN 279 (1041)
T ss_pred c-------cccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecC
Confidence 1 1122222 568999999999999999999999999999999999999999999999999999987654
Q ss_pred CCC--CceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHHHHHHHHHHHHHHhCCCCccCCCCccchhhhcccCCCc
Q 006540 321 ALE--AKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGS 398 (641)
Q Consensus 321 ~~~--~~~~~skL~lVDLAGSEr~~kt~a~g~rlkE~~~INkSL~aLg~VI~aL~~~~~hIPYRdSKLT~LLqdsLgGns 398 (641)
..+ .-...|||+||||||||.+.++||.+.|.+|++.||+||.+||+||.||.++.+|||||+|||||||||||||..
T Consensus 280 t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkT 359 (1041)
T KOG0243|consen 280 TPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKT 359 (1041)
T ss_pred CCcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCc
Confidence 443 335679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEecCCCCCCHHHhHHHHHHHHHhhcccccccccHHHHH
Q 006540 399 KVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSEDLKK 441 (641)
Q Consensus 399 kT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~~~~~~~~ 441 (641)
||+||+||||+..+++||++||.||.|||+|+|+|.+|.-+.+
T Consensus 360 KT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K 402 (1041)
T KOG0243|consen 360 KTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMK 402 (1041)
T ss_pred eeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHH
Confidence 9999999999999999999999999999999999999965443
No 4
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.6e-88 Score=770.62 Aligned_cols=356 Identities=46% Similarity=0.662 Sum_probs=317.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCEEEEEEeCCCCcccCCcccC-cEEecC-CEEEEEeCCc-----eE
Q 006540 70 IINLEGEIVELRLKKRRLDEKRREALNKILDIKGCIRVFCRVRSFLVTGRRVIHE-PVLTEL-EKVVVRSGGS-----KK 142 (641)
Q Consensus 70 i~~l~~e~~~l~~~~~~~e~~Rr~lhn~i~elkG~IrV~~RvRP~~~~e~~~~~~-~v~~~~-~~v~v~~~~~-----~~ 142 (641)
+..|......+..+. .++..||+|||+|+||||||||||||||+.+++...... ++..+. ..+.+..... .+
T Consensus 282 ~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (670)
T KOG0239|consen 282 QSDLESLEENLVEKK-KEKEERRKLHNEILELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQ 360 (670)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccc
Confidence 333333333444444 566999999999999999999999999999987654322 222322 2355553221 13
Q ss_pred EEEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceeecC-CCCCCCchhHHHHHHHHHHhcCC-Cce
Q 006540 143 EFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDG-TSDQPGIVPRALEELFRQAALDN-SSS 220 (641)
Q Consensus 143 ~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~G-~~~~~GIIpRal~~LF~~~~~~~-~~~ 220 (641)
.|.||+||+|.++|++||.++.|+|++|+||||+||||||||||||||||.| +++++|||||++++||..+.... +|.
T Consensus 361 ~f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~ 440 (670)
T KOG0239|consen 361 SFKFDKVFGPLASQDDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWK 440 (670)
T ss_pred cceeeeecCCcccHHHHHHHHHHHHHHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCce
Confidence 5999999999999999999999999999999999999999999999999999 69999999999999999765543 899
Q ss_pred EEEEEeEEEEecceeeecCCCCCccchhhhhcccceeeEeCCCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCC
Q 006540 221 VTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNV 300 (641)
Q Consensus 221 ~~v~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~~L~i~ed~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~ 300 (641)
|.+.++|+|||||.|+|||++.+. ...+.|+++++|..+|.|++.+.|.+.+++..+++.|..+|++++|.+
T Consensus 441 y~~~~s~~EIYNe~i~DlL~~~~~--------~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~ 512 (670)
T KOG0239|consen 441 YDKTVSMLEIYNEAIRDLLSDESY--------VGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTAS 512 (670)
T ss_pred EEeeeehhHHHHHHHHHhcccccc--------ccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhcccccccccc
Confidence 999999999999999999987741 125899999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEEEEEEecCCCCCceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHHHHHHHHHHHHHHhCCCCcc
Q 006540 301 NEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVP 380 (641)
Q Consensus 301 N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~rlkE~~~INkSL~aLg~VI~aL~~~~~hIP 380 (641)
|++|||||+||+|+|...+..+ +....|.|+|||||||||+.+++++|+|++|+++||+||++||+||.||+.+..|||
T Consensus 513 Ne~SSRSH~v~~v~v~g~~~~t-~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiP 591 (670)
T KOG0239|consen 513 NERSSRSHLVFRVRIRGINELT-GIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIP 591 (670)
T ss_pred chhhhccceEEEEEEeccccCc-ccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCc
Confidence 9999999999999999886655 778889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchhhhcccCCCcccceEEecCCCCCCHHHhHHHHHHHHHhhcccccccc
Q 006540 381 YRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNREL 435 (641)
Q Consensus 381 YRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~~ 435 (641)
|||||||+||||||||++||+|+|+|||...++.||+++|+||.|++.++.++..
T Consensus 592 yRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 592 YRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSAR 646 (670)
T ss_pred ccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccc
Confidence 9999999999999999999999999999999999999999999999999988776
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=2.2e-84 Score=748.89 Aligned_cols=347 Identities=34% Similarity=0.511 Sum_probs=304.8
Q ss_pred CCCEEEEEEeCCCCcccCCcccCcEEecCCEEEEEeCCceEEEEeceeecCCCCchhhHhhh-HHHHHHhhcCcceeEEe
Q 006540 102 KGCIRVFCRVRSFLVTGRRVIHEPVLTELEKVVVRSGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNVCVLA 180 (641)
Q Consensus 102 kG~IrV~~RvRP~~~~e~~~~~~~v~~~~~~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~~vl~G~N~~IfA 180 (641)
.++|+|||||||+...+. +...++.+.++.+.+. .+.|.||+||+++++|++||+.+ .|+|+++++|||+||||
T Consensus 97 ds~VkV~VRVRPl~~~E~-g~~iV~~~s~dsl~I~----~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTIFA 171 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEE-GEMIVQKMSNDSLTIN----GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFA 171 (1320)
T ss_pred CCCeEEEEEcCCCCCccC-CCeeEEEcCCCeEEEe----CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcceeec
Confidence 579999999999988643 3333444556666663 36899999999999999999997 89999999999999999
Q ss_pred cccCCCCcceeecCCC----------CCCCchhHHHHHHHHHHhc------CCCceEEEEEeEEEEecceeeecCCCCCc
Q 006540 181 YGQTGTGKTFTMDGTS----------DQPGIVPRALEELFRQAAL------DNSSSVTFSMSMLEVYMGSVRDLLAPKPV 244 (641)
Q Consensus 181 YGqTGSGKTyTM~G~~----------~~~GIIpRal~~LF~~~~~------~~~~~~~v~vS~lEIYnE~V~DLL~~~~~ 244 (641)
||||||||||||+|+. .++|||||++++||..+.. +..+.|.|+|||+|||||+|+|||++...
T Consensus 172 YGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~k 251 (1320)
T PLN03188 172 YGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQK 251 (1320)
T ss_pred CCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceeccccccC
Confidence 9999999999999963 5689999999999998753 23568999999999999999999987643
Q ss_pred cchhhhhcccceeeEeCCCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecCCC--
Q 006540 245 FKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDAL-- 322 (641)
Q Consensus 245 ~~~~~~~~~~~L~i~ed~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~-- 322 (641)
.|.|++|+.++++|.|++++.|.+++++..+|..|..+|++++|.+|..|||||+||+|+|.......
T Consensus 252 ----------~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~d 321 (1320)
T PLN03188 252 ----------NLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVAD 321 (1320)
T ss_pred ----------CceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCC
Confidence 58999999999999999999999999999999999999999999999999999999999998643221
Q ss_pred -CCceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHHHHHHHHHHHHHHh-----CCCCccCCCCccchhhhcccCC
Q 006540 323 -EAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRR-----KRGHVPYRNSKLTQILRDSLGD 396 (641)
Q Consensus 323 -~~~~~~skL~lVDLAGSEr~~kt~a~g~rlkE~~~INkSL~aLg~VI~aL~~-----~~~hIPYRdSKLT~LLqdsLgG 396 (641)
......|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+. +..||||||||||+||||+|||
T Consensus 322 g~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGG 401 (1320)
T PLN03188 322 GLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGG 401 (1320)
T ss_pred CCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCC
Confidence 1335679999999999999999999999999999999999999999999975 4579999999999999999999
Q ss_pred CcccceEEecCCCCCCHHHhHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 397 GSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSEDLKKRREIRMAELEEDMREAEAECQNVRNQ 467 (641)
Q Consensus 397 nskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~~~~~~~~~~~~~i~~L~~el~~l~~e~~~l~~q 467 (641)
||+|+|||||||+..+++||++||+||+||+.|++.+.+|+.... .+..|++.|++|++|+..|+..
T Consensus 402 NSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~----~vn~LrelIr~Lk~EL~rLK~~ 468 (1320)
T PLN03188 402 NAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQD----DVNFLREVIRQLRDELQRVKAN 468 (1320)
T ss_pred CceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhh----hHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999976543 2344556666677777666654
No 6
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=7.3e-84 Score=696.55 Aligned_cols=328 Identities=37% Similarity=0.554 Sum_probs=299.9
Q ss_pred CCCEEEEEEeCCCCcccCC-cccCcEEec--CCEEEEEeCCceEEEEeceeecCCCCchhhHhhh-HHHHHHhhcCccee
Q 006540 102 KGCIRVFCRVRSFLVTGRR-VIHEPVLTE--LEKVVVRSGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNVC 177 (641)
Q Consensus 102 kG~IrV~~RvRP~~~~e~~-~~~~~v~~~--~~~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~~vl~G~N~~ 177 (641)
-++|+|+||+||.+..+.. +...+..+. .+.+.+......+.|.||+||.|+++|++||+.+ .|+|++||.|||+|
T Consensus 6 ~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNGT 85 (607)
T KOG0240|consen 6 ECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNGT 85 (607)
T ss_pred CCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeeecCCCccHHHHHHHHHHHHHHHHhccccee
Confidence 4899999999999986543 333333333 3556666555558999999999999999999986 99999999999999
Q ss_pred EEecccCCCCcceeecCCCC---CCCchhHHHHHHHHHHhcCC-CceEEEEEeEEEEecceeeecCCCCCccchhhhhcc
Q 006540 178 VLAYGQTGTGKTFTMDGTSD---QPGIVPRALEELFRQAALDN-SSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATR 253 (641)
Q Consensus 178 IfAYGqTGSGKTyTM~G~~~---~~GIIpRal~~LF~~~~~~~-~~~~~v~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~ 253 (641)
|||||||||||||||.|... ..|||||++++||..+.... ..+|.|.|||||||+|+|+|||++...
T Consensus 86 vfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~--------- 156 (607)
T KOG0240|consen 86 VFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKT--------- 156 (607)
T ss_pred EEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccC---------
Confidence 99999999999999999765 56999999999999987654 679999999999999999999997654
Q ss_pred cceeeEeCCCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecCCCCCceEEeEeEE
Q 006540 254 CNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWM 333 (641)
Q Consensus 254 ~~L~i~ed~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~l 333 (641)
++.+++|.+.+++|+|++++.|.++++++.+++.|..+|+++.|+||.+|||||+||+|+|.+.+... .....|+|+|
T Consensus 157 -nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~-~~~~~gkLyL 234 (607)
T KOG0240|consen 157 -NLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVED-KRKLSGKLYL 234 (607)
T ss_pred -CceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccc-hhhccccEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999988766 7778899999
Q ss_pred EecCCCccccccCCCcchhhhhhhhhHHHHHHHHHHHHHHhC-CCCccCCCCccchhhhcccCCCcccceEEecCCCCCC
Q 006540 334 VDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRK-RGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEED 412 (641)
Q Consensus 334 VDLAGSEr~~kt~a~g~rlkE~~~INkSL~aLg~VI~aL~~~-~~hIPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~ 412 (641)
|||||||+++|+|+.|..+.|+++||+||+|||+||+||+.+ ..|||||||||||||||+|||||+|.+|+|++|+.-+
T Consensus 235 VDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n 314 (607)
T KOG0240|consen 235 VDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLN 314 (607)
T ss_pred EEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccc
Confidence 999999999999999999999999999999999999999998 7899999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHhhcccccccccHHHH
Q 006540 413 VGETICSLSFAKRARGIESNRELSEDLK 440 (641)
Q Consensus 413 ~~ETlsTLrFA~rar~I~~~~~~~~~~~ 440 (641)
..||.+||+|+.||+.|+|.+.+|.+..
T Consensus 315 ~~ET~STl~fg~rak~ikN~v~~n~e~~ 342 (607)
T KOG0240|consen 315 EAETKSTLRFGNRAKTIKNTVWVNLELT 342 (607)
T ss_pred ccccccchhhccccccccchhhhhhHhh
Confidence 9999999999999999999998886543
No 7
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1.9e-82 Score=677.31 Aligned_cols=316 Identities=35% Similarity=0.563 Sum_probs=287.9
Q ss_pred CEEEEEEeCCCCcccCC-cccCcEEecCCEEEEEeC--------------CceEEEEeceeecCCCCchhhHhhh-HHHH
Q 006540 104 CIRVFCRVRSFLVTGRR-VIHEPVLTELEKVVVRSG--------------GSKKEFGFDKVFNQAASQEDVFVEV-EPIL 167 (641)
Q Consensus 104 ~IrV~~RvRP~~~~e~~-~~~~~v~~~~~~v~v~~~--------------~~~~~F~FD~VF~~~atQ~eVf~~v-~plV 167 (641)
+|+|||||||+...|.. +...++.+.++.+.+... ...+.|.||+||+++++|++||+.+ .|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 69999999999986532 344555554444333221 2348999999999999999999987 8999
Q ss_pred HHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCC-CceEEEEEeEEEEecceeeecCCCCCccc
Q 006540 168 RSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDN-SSSVTFSMSMLEVYMGSVRDLLAPKPVFK 246 (641)
Q Consensus 168 ~~vl~G~N~~IfAYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~-~~~~~v~vS~lEIYnE~V~DLL~~~~~~~ 246 (641)
+++++|||+||||||||||||||||+|+.+++|||||++++||+.+.... .+.|.|++||+|||||+|+|||++...
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~-- 158 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSG-- 158 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCC--
Confidence 99999999999999999999999999999999999999999999887665 789999999999999999999987532
Q ss_pred hhhhhcccceeeEeCCCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecCCC--CC
Q 006540 247 AYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDAL--EA 324 (641)
Q Consensus 247 ~~~~~~~~~L~i~ed~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~--~~ 324 (641)
.+.+++|+.++++|.|++++.|.+++|++.+|+.|.++|++++|.+|..|||||+||+|+|.+.+... ..
T Consensus 159 --------~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~ 230 (338)
T cd01370 159 --------PLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQ 230 (338)
T ss_pred --------CceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999998876542 35
Q ss_pred ceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHHHHHHHHHHHHHHhCC---CCccCCCCccchhhhcccCCCcccc
Q 006540 325 KTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKR---GHVPYRNSKLTQILRDSLGDGSKVL 401 (641)
Q Consensus 325 ~~~~skL~lVDLAGSEr~~kt~a~g~rlkE~~~INkSL~aLg~VI~aL~~~~---~hIPYRdSKLT~LLqdsLgGnskT~ 401 (641)
....|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|+.+. .||||||||||+||+|+|||||+|+
T Consensus 231 ~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~ 310 (338)
T cd01370 231 QVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTV 310 (338)
T ss_pred cEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEE
Confidence 6778999999999999999999999999999999999999999999999887 8999999999999999999999999
Q ss_pred eEEecCCCCCCHHHhHHHHHHHHHhhcc
Q 006540 402 MLVHASPCEEDVGETICSLSFAKRARGI 429 (641)
Q Consensus 402 mI~~VSP~~~~~~ETlsTLrFA~rar~I 429 (641)
||+||||+..+++||++||+||+||++|
T Consensus 311 ~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 311 MIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred EEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999987
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=3e-82 Score=675.46 Aligned_cols=316 Identities=38% Similarity=0.536 Sum_probs=282.5
Q ss_pred CCEEEEEEeCCCCcccCCc-ccCcEEec-CCEEEEEeCCceEEEEeceeecCCCCchhhHhhh-HHHHHHhhcCcceeEE
Q 006540 103 GCIRVFCRVRSFLVTGRRV-IHEPVLTE-LEKVVVRSGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNVCVL 179 (641)
Q Consensus 103 G~IrV~~RvRP~~~~e~~~-~~~~v~~~-~~~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~~vl~G~N~~If 179 (641)
.+|||+|||||+...|... ...++... ++.+.+... ..+.|.||+||+++++|++||+.+ .|+|+++++|||+|||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~-~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~ 79 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSH-PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIF 79 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCC-CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEE
Confidence 4799999999999866432 33444443 455555433 368999999999999999999987 9999999999999999
Q ss_pred ecccCCCCcceeecCCCC--------CCCchhHHHHHHHHHHhcC-----CCceEEEEEeEEEEecceeeecCCCCCccc
Q 006540 180 AYGQTGTGKTFTMDGTSD--------QPGIVPRALEELFRQAALD-----NSSSVTFSMSMLEVYMGSVRDLLAPKPVFK 246 (641)
Q Consensus 180 AYGqTGSGKTyTM~G~~~--------~~GIIpRal~~LF~~~~~~-----~~~~~~v~vS~lEIYnE~V~DLL~~~~~~~ 246 (641)
|||||||||||||+|+.. ++|||||++++||..+... ....|.|++||+|||||+|+|||++...
T Consensus 80 aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~-- 157 (337)
T cd01373 80 AYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSR-- 157 (337)
T ss_pred EeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCC--
Confidence 999999999999999753 6799999999999976533 3568999999999999999999987543
Q ss_pred hhhhhcccceeeEeCCCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecCCCC-Cc
Q 006540 247 AYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALE-AK 325 (641)
Q Consensus 247 ~~~~~~~~~L~i~ed~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~-~~ 325 (641)
.+.+++++.++++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|........ ..
T Consensus 158 --------~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~ 229 (337)
T cd01373 158 --------NLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTN 229 (337)
T ss_pred --------CceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCc
Confidence 589999999999999999999999999999999999999999999999999999999999987654332 24
Q ss_pred eEEeEeEEEecCCCccccccCCCcchhhhhhhhhHHHHHHHHHHHHHHh----CCCCccCCCCccchhhhcccCCCcccc
Q 006540 326 TEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRR----KRGHVPYRNSKLTQILRDSLGDGSKVL 401 (641)
Q Consensus 326 ~~~skL~lVDLAGSEr~~kt~a~g~rlkE~~~INkSL~aLg~VI~aL~~----~~~hIPYRdSKLT~LLqdsLgGnskT~ 401 (641)
...|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+. +..||||||||||+||+|+|||||+|+
T Consensus 230 ~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~ 309 (337)
T cd01373 230 IRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTT 309 (337)
T ss_pred EEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEE
Confidence 5679999999999999999999999999999999999999999999974 468999999999999999999999999
Q ss_pred eEEecCCCCCCHHHhHHHHHHHHHhhcc
Q 006540 402 MLVHASPCEEDVGETICSLSFAKRARGI 429 (641)
Q Consensus 402 mI~~VSP~~~~~~ETlsTLrFA~rar~I 429 (641)
||+||||+..+++||++||+||.|||.|
T Consensus 310 ~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 310 IIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred EEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999987
No 9
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-81 Score=713.83 Aligned_cols=324 Identities=38% Similarity=0.581 Sum_probs=293.4
Q ss_pred CCEEEEEEeCCCCcccCCc--ccCcEEecCCEEEEEeCCc------eEEEEeceeecCCCCchhhHhh-hHHHHHHhhcC
Q 006540 103 GCIRVFCRVRSFLVTGRRV--IHEPVLTELEKVVVRSGGS------KKEFGFDKVFNQAASQEDVFVE-VEPILRSALDG 173 (641)
Q Consensus 103 G~IrV~~RvRP~~~~e~~~--~~~~v~~~~~~v~v~~~~~------~~~F~FD~VF~~~atQ~eVf~~-v~plV~~vl~G 173 (641)
.+|.|++||||+.+.+... ...+....+..+....... ...|.||+||+++++|++||+. ++|+|.+|+.|
T Consensus 6 ~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G 85 (675)
T KOG0242|consen 6 EKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEG 85 (675)
T ss_pred ceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhcC
Confidence 5899999999999863221 2223333333333322111 3789999999999999999987 59999999999
Q ss_pred cceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCCccchhhhhcc
Q 006540 174 HNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATR 253 (641)
Q Consensus 174 ~N~~IfAYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~ 253 (641)
||++|||||||||||||||.|..++|||||+++.+||+.+....++.|.|.|||+|||||.|+|||+++..
T Consensus 86 ~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~--------- 156 (675)
T KOG0242|consen 86 FNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGG--------- 156 (675)
T ss_pred cccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCC---------
Confidence 99999999999999999999999999999999999999998888999999999999999999999998865
Q ss_pred cceeeEeCCCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecCCCCCceEEeEeEE
Q 006540 254 CNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWM 333 (641)
Q Consensus 254 ~~L~i~ed~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~l 333 (641)
.|.|++|+.++++|.||++..|.|.++++.||..|.++|+++.|++|..|||||+||+|.|........ . ..|+|+|
T Consensus 157 -~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~-~-~~s~L~l 233 (675)
T KOG0242|consen 157 -DLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS-S-RVSKLNL 233 (675)
T ss_pred -CceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc-c-hhheehh
Confidence 589999999999999999999999999999999999999999999999999999999999998765543 2 6799999
Q ss_pred EecCCCccccccCCCcchhhhhhhhhHHHHHHHHHHHHHHhC--CCCccCCCCccchhhhcccCCCcccceEEecCCCCC
Q 006540 334 VDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRK--RGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEE 411 (641)
Q Consensus 334 VDLAGSEr~~kt~a~g~rlkE~~~INkSL~aLg~VI~aL~~~--~~hIPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~ 411 (641)
||||||||+.++++.|.|++||.+||+||++||+||.+|..+ ..||||||||||||||++|||||+|+|||||+|+..
T Consensus 234 IDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~ 313 (675)
T KOG0242|consen 234 IDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSS 313 (675)
T ss_pred hhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhh
Confidence 999999999999999999999999999999999999999876 469999999999999999999999999999999999
Q ss_pred CHHHhHHHHHHHHHhhcccccccccHH
Q 006540 412 DVGETICSLSFAKRARGIESNRELSED 438 (641)
Q Consensus 412 ~~~ETlsTLrFA~rar~I~~~~~~~~~ 438 (641)
+++||.+||+||+||+.|++.+.+|..
T Consensus 314 ~~~eT~nTL~fAsrak~i~~~~~~n~~ 340 (675)
T KOG0242|consen 314 HYEETKNTLKFASRAKEITTKAQVNVI 340 (675)
T ss_pred HHHHHHHHHHHHHHhhhccccccccee
Confidence 999999999999999999999887753
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=3.4e-80 Score=661.65 Aligned_cols=315 Identities=31% Similarity=0.525 Sum_probs=283.4
Q ss_pred CEEEEEEeCCCCcccCCc-ccCcEE-ecCCEEEEEeCC-------------ceEEEEeceeecCCCCchhhHhhh-HHHH
Q 006540 104 CIRVFCRVRSFLVTGRRV-IHEPVL-TELEKVVVRSGG-------------SKKEFGFDKVFNQAASQEDVFVEV-EPIL 167 (641)
Q Consensus 104 ~IrV~~RvRP~~~~e~~~-~~~~v~-~~~~~v~v~~~~-------------~~~~F~FD~VF~~~atQ~eVf~~v-~plV 167 (641)
+|+|||||||+...|... ...++. .+++.+.+..+. ..+.|.||+||+++++|++||+.+ .|+|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v 81 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPLV 81 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHHH
Confidence 699999999999876432 333343 456667765432 357999999999999999999986 9999
Q ss_pred HHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCCccch
Q 006540 168 RSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKA 247 (641)
Q Consensus 168 ~~vl~G~N~~IfAYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~V~DLL~~~~~~~~ 247 (641)
+++++|||+||||||||||||||||+|+..++|||||++++||+.+.. |.|.+||+|||||+|+|||++....
T Consensus 82 ~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~-----~~v~~S~~EIyne~v~DLL~~~~~~-- 154 (345)
T cd01368 82 QDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG-----YSVFVSYVEIYNNYIYDLLEDSPSS-- 154 (345)
T ss_pred HHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh-----eeEEEEEEEEeCCEeEeCCCCcccc--
Confidence 999999999999999999999999999999999999999999998764 9999999999999999999886541
Q ss_pred hhhhcccceeeEeCCCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecCCC-----
Q 006540 248 YEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDAL----- 322 (641)
Q Consensus 248 ~~~~~~~~L~i~ed~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~----- 322 (641)
...+..+.|++|++++++|.|++++.|.+++|+..+|..|.++|++++|.+|.+|||||+||+|+|.+.....
T Consensus 155 --~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~ 232 (345)
T cd01368 155 --TKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVD 232 (345)
T ss_pred --ccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccc
Confidence 1223468999999999999999999999999999999999999999999999999999999999998765432
Q ss_pred --CCceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHHHHHHHHHHHHHHh------CCCCccCCCCccchhhhccc
Q 006540 323 --EAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRR------KRGHVPYRNSKLTQILRDSL 394 (641)
Q Consensus 323 --~~~~~~skL~lVDLAGSEr~~kt~a~g~rlkE~~~INkSL~aLg~VI~aL~~------~~~hIPYRdSKLT~LLqdsL 394 (641)
......|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|++ +..||||||||||+||+|+|
T Consensus 233 ~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l 312 (345)
T cd01368 233 QDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYF 312 (345)
T ss_pred cCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhc
Confidence 2456789999999999999999999999999999999999999999999986 56899999999999999999
Q ss_pred CCCcccceEEecCCCCCCHHHhHHHHHHHHHhh
Q 006540 395 GDGSKVLMLVHASPCEEDVGETICSLSFAKRAR 427 (641)
Q Consensus 395 gGnskT~mI~~VSP~~~~~~ETlsTLrFA~rar 427 (641)
||||+|+||+||||+..+++||++||+||.+|+
T Consensus 313 ~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 313 DGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999985
No 11
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.5e-81 Score=689.59 Aligned_cols=332 Identities=37% Similarity=0.575 Sum_probs=301.2
Q ss_pred CCEEEEEEeCCCCcccCC-cccCcEEecCCEEEEEeC---------CceEEEEeceeecCC-------CCchhhHhhh-H
Q 006540 103 GCIRVFCRVRSFLVTGRR-VIHEPVLTELEKVVVRSG---------GSKKEFGFDKVFNQA-------ASQEDVFVEV-E 164 (641)
Q Consensus 103 G~IrV~~RvRP~~~~e~~-~~~~~v~~~~~~v~v~~~---------~~~~~F~FD~VF~~~-------atQ~eVf~~v-~ 164 (641)
.+|||++||||++..|.. ...+++.++.+..++... ++.++|.||++|++. +.|+.||+.+ .
T Consensus 4 ~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~ 83 (1714)
T KOG0241|consen 4 AKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLGE 83 (1714)
T ss_pred cceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcch
Confidence 589999999999986643 456777888877776632 456999999999864 6899999999 7
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcC--CCceEEEEEeEEEEecceeeecCCCC
Q 006540 165 PILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALD--NSSSVTFSMSMLEVYMGSVRDLLAPK 242 (641)
Q Consensus 165 plV~~vl~G~N~~IfAYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~--~~~~~~v~vS~lEIYnE~V~DLL~~~ 242 (641)
-+|+++|+|||+||||||||||||||||+|..++||||||.+..||..+... ....|+|.|||+|||||+++|||+|+
T Consensus 84 ~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk 163 (1714)
T KOG0241|consen 84 GILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPK 163 (1714)
T ss_pred HHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCCC
Confidence 8999999999999999999999999999999999999999999999987654 37789999999999999999999998
Q ss_pred CccchhhhhcccceeeEeCCCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecCCC
Q 006540 243 PVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDAL 322 (641)
Q Consensus 243 ~~~~~~~~~~~~~L~i~ed~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~ 322 (641)
.. ...|+++++.--|+||.||++..|.|++|+..++..|+++|++++|+||..|||||+||.|.|.+.-.+.
T Consensus 164 ~s--------sqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ 235 (1714)
T KOG0241|consen 164 GS--------SQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDL 235 (1714)
T ss_pred CC--------cceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEecc
Confidence 65 2468999999999999999999999999999999999999999999999999999999999998753222
Q ss_pred C---CceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHHHHHHHHHHHHHHhC------CCCccCCCCccchhhhcc
Q 006540 323 E---AKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRK------RGHVPYRNSKLTQILRDS 393 (641)
Q Consensus 323 ~---~~~~~skL~lVDLAGSEr~~kt~a~g~rlkE~~~INkSL~aLg~VI~aL~~~------~~hIPYRdSKLT~LLqds 393 (641)
. .....|+|.|||||||||+.++|+.|.+++|+.+||+||++||.||+||+.+ .++||||||.|||||+|+
T Consensus 236 ktg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~ 315 (1714)
T KOG0241|consen 236 KTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDN 315 (1714)
T ss_pred ccCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhh
Confidence 1 3456799999999999999999999999999999999999999999999753 469999999999999999
Q ss_pred cCCCcccceEEecCCCCCCHHHhHHHHHHHHHhhcccccccccHHHHHH
Q 006540 394 LGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSEDLKKR 442 (641)
Q Consensus 394 LgGnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~~~~~~~~~ 442 (641)
|||||+|+||+||||++++|+||++|||||.|||.|+|++.+|+++...
T Consensus 316 LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnar 364 (1714)
T KOG0241|consen 316 LGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNAR 364 (1714)
T ss_pred cCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHH
Confidence 9999999999999999999999999999999999999999999887654
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.7e-79 Score=658.74 Aligned_cols=327 Identities=36% Similarity=0.551 Sum_probs=298.7
Q ss_pred CCEEEEEEeCCCCcccCC-cccCcEEecCCEEEEEeCC-------ceEEEEeceeecCC-------CCchhhHhhh-HHH
Q 006540 103 GCIRVFCRVRSFLVTGRR-VIHEPVLTELEKVVVRSGG-------SKKEFGFDKVFNQA-------ASQEDVFVEV-EPI 166 (641)
Q Consensus 103 G~IrV~~RvRP~~~~e~~-~~~~~v~~~~~~v~v~~~~-------~~~~F~FD~VF~~~-------atQ~eVf~~v-~pl 166 (641)
++|+|+|||||+...|.. +...++.++++.+.+.... ..+.|.||+||++. ++|++||+++ .|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 689999999999986543 4556777888888888653 35899999999999 9999999986 999
Q ss_pred HHHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCC--CceEEEEEeEEEEecceeeecCCCCCc
Q 006540 167 LRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDN--SSSVTFSMSMLEVYMGSVRDLLAPKPV 244 (641)
Q Consensus 167 V~~vl~G~N~~IfAYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~--~~~~~v~vS~lEIYnE~V~DLL~~~~~ 244 (641)
|+++++|||+||||||||||||||||+|+..++|||||++++||+.+.... ...|.|++||+|||||+|+|||++...
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~ 160 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKK 160 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCcc
Confidence 999999999999999999999999999999999999999999999876544 578999999999999999999997752
Q ss_pred cchhhhhcccceeeEeCCCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecCC---
Q 006540 245 FKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA--- 321 (641)
Q Consensus 245 ~~~~~~~~~~~L~i~ed~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~--- 321 (641)
....+.+++++.++++|.|++++.|.+++|+..++..|.++|.+++|.+|..|||||+||+|+|.+....
T Consensus 161 -------~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~ 233 (356)
T cd01365 161 -------NKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKET 233 (356)
T ss_pred -------CCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCC
Confidence 2236899999999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHHHHHHHHHHHHHHhC--------CCCccCCCCccchhhhcc
Q 006540 322 LEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRK--------RGHVPYRNSKLTQILRDS 393 (641)
Q Consensus 322 ~~~~~~~skL~lVDLAGSEr~~kt~a~g~rlkE~~~INkSL~aLg~VI~aL~~~--------~~hIPYRdSKLT~LLqds 393 (641)
.......|+|+||||||||+..+++..|.+++|+..||+||++|++||.+|+.+ ..||||||||||+||+|+
T Consensus 234 ~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~ 313 (356)
T cd01365 234 DLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKEN 313 (356)
T ss_pred CCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHh
Confidence 235677899999999999999999999999999999999999999999999763 489999999999999999
Q ss_pred cCCCcccceEEecCCCCCCHHHhHHHHHHHHHhhccccccccc
Q 006540 394 LGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRELS 436 (641)
Q Consensus 394 LgGnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~~~ 436 (641)
||||++|+||+||||...+++||++||+||+++++|++.|.+|
T Consensus 314 lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 314 LGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred cCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 9999999999999999999999999999999999999998764
No 13
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1.1e-78 Score=644.38 Aligned_cols=309 Identities=36% Similarity=0.515 Sum_probs=282.3
Q ss_pred CCEEEEEEeCCCCcccCC-cccCcEEecCC-EEEEEeCC---------ceEEEEeceeecCCCCchhhHhhh-HHHHHHh
Q 006540 103 GCIRVFCRVRSFLVTGRR-VIHEPVLTELE-KVVVRSGG---------SKKEFGFDKVFNQAASQEDVFVEV-EPILRSA 170 (641)
Q Consensus 103 G~IrV~~RvRP~~~~e~~-~~~~~v~~~~~-~v~v~~~~---------~~~~F~FD~VF~~~atQ~eVf~~v-~plV~~v 170 (641)
.+|+|+|||||+...+.. +...++.++++ .+.+.... ..+.|.||+||+++++|++||+.+ .|+|+++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 489999999999987643 33455555554 66665321 247899999999999999999985 9999999
Q ss_pred hcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCCccchhhh
Q 006540 171 LDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEA 250 (641)
Q Consensus 171 l~G~N~~IfAYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~V~DLL~~~~~~~~~~~ 250 (641)
++|||+||||||||||||||||+|+.+++|||||++++||+.+.... ..|.|++||+|||||+|+|||++..
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~~~------- 152 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN-DDLGVTVSFFEIYGGKLFDLLNDRK------- 152 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc-cccEEEEEEEeeecCchhhhccCcc-------
Confidence 99999999999999999999999999999999999999999887654 7899999999999999999998732
Q ss_pred hcccceeeEeCCCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecCCCCCceEEeE
Q 006540 251 ATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSK 330 (641)
Q Consensus 251 ~~~~~L~i~ed~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~sk 330 (641)
.+.+++++.++++|.|++++.|.+++|++.+|+.|.++|++++|.+|..|||||+||+|+|..... ....|+
T Consensus 153 ----~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~----~~~~s~ 224 (322)
T cd01367 153 ----RLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL----NKLLGK 224 (322)
T ss_pred ----ceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC----CeeEEE
Confidence 589999999999999999999999999999999999999999999999999999999999987653 456799
Q ss_pred eEEEecCCCccccccC-CCcchhhhhhhhhHHHHHHHHHHHHHHhCCCCccCCCCccchhhhcccCCCcccceEEecCCC
Q 006540 331 LWMVDLGGSERVLKTG-ATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPC 409 (641)
Q Consensus 331 L~lVDLAGSEr~~kt~-a~g~rlkE~~~INkSL~aLg~VI~aL~~~~~hIPYRdSKLT~LLqdsLgGnskT~mI~~VSP~ 409 (641)
|+||||||||+...++ ..+++++|+.+||+||++|++||.+|++++.||||||||||+||+|+|||||+|+||+||||+
T Consensus 225 l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~ 304 (322)
T cd01367 225 LSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPS 304 (322)
T ss_pred EEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCc
Confidence 9999999999998876 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHhHHHHHHHHHhh
Q 006540 410 EEDVGETICSLSFAKRAR 427 (641)
Q Consensus 410 ~~~~~ETlsTLrFA~rar 427 (641)
..+++||++||+||+|+|
T Consensus 305 ~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 305 ASSCEHTLNTLRYADRVK 322 (322)
T ss_pred hhhHHHHHHHHHHHHhhC
Confidence 999999999999999986
No 14
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=3.9e-78 Score=639.32 Aligned_cols=309 Identities=37% Similarity=0.577 Sum_probs=283.1
Q ss_pred CEEEEEEeCCCCcccCCcccCcEEe-cC-----CEEEEEeCC---ceEEEEeceeecCCCCchhhHhh-hHHHHHHhhcC
Q 006540 104 CIRVFCRVRSFLVTGRRVIHEPVLT-EL-----EKVVVRSGG---SKKEFGFDKVFNQAASQEDVFVE-VEPILRSALDG 173 (641)
Q Consensus 104 ~IrV~~RvRP~~~~e~~~~~~~v~~-~~-----~~v~v~~~~---~~~~F~FD~VF~~~atQ~eVf~~-v~plV~~vl~G 173 (641)
+|+|+|||||+...+... ..++.. +. ..+.+..+. ..+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~i~V~vRvRP~~~~e~~~-~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G 79 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDS-SSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSG 79 (319)
T ss_pred CcEEEEEeCcCCccccCC-CceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCC
Confidence 699999999998877443 344443 33 356666432 45899999999999999999998 59999999999
Q ss_pred cceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCCccchhhhhcc
Q 006540 174 HNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATR 253 (641)
Q Consensus 174 ~N~~IfAYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~ 253 (641)
||+||||||||||||||||+|+..++|||||++++||+.+... .+.|.|++||+|||||+|+|||++...
T Consensus 80 ~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~~~~~--------- 149 (319)
T cd01376 80 QNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQ-AWTGAFSMSYYEIYNEKVYDLLEPAKK--------- 149 (319)
T ss_pred CceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhc-cccceEEEEEEEEECCEeeEccCCCCC---------
Confidence 9999999999999999999999999999999999999877554 478999999999999999999987533
Q ss_pred cceeeEeCCCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecCCCCCceEEeEeEE
Q 006540 254 CNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWM 333 (641)
Q Consensus 254 ~~L~i~ed~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~l 333 (641)
.+.|++++.|+++|.|++++.|.+++|+..++..|.++|.+++|.+|..|||||+||+|+|.+.+. .....|+|+|
T Consensus 150 -~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~~~~~s~l~~ 225 (319)
T cd01376 150 -ELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS---NIQLEGKLNL 225 (319)
T ss_pred -CceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC---CceEEEEEEE
Confidence 588999999999999999999999999999999999999999999999999999999999988754 3367899999
Q ss_pred EecCCCccccccCCCcchhhhhhhhhHHHHHHHHHHHHHHhCCCCccCCCCccchhhhcccCCCcccceEEecCCCCCCH
Q 006540 334 VDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDV 413 (641)
Q Consensus 334 VDLAGSEr~~kt~a~g~rlkE~~~INkSL~aLg~VI~aL~~~~~hIPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~ 413 (641)
|||||||+..+++..|.+++|+..||+||++|++||.+|..+..|||||+||||+||+|+|||||+|+||+||||...++
T Consensus 226 VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~ 305 (319)
T cd01376 226 IDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFY 305 (319)
T ss_pred EECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHhh
Q 006540 414 GETICSLSFAKRAR 427 (641)
Q Consensus 414 ~ETlsTLrFA~rar 427 (641)
+||++||+||+|||
T Consensus 306 ~eTl~TL~fa~r~~ 319 (319)
T cd01376 306 QDTLSTLNFASRSK 319 (319)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999999986
No 15
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=6e-78 Score=638.20 Aligned_cols=315 Identities=35% Similarity=0.566 Sum_probs=292.6
Q ss_pred CEEEEEEeCCCCcccCCcccCcEEecCC-EEEEEeCCceEEEEeceeecCCCCchhhHhhh-HHHHHHhhcCcceeEEec
Q 006540 104 CIRVFCRVRSFLVTGRRVIHEPVLTELE-KVVVRSGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNVCVLAY 181 (641)
Q Consensus 104 ~IrV~~RvRP~~~~e~~~~~~~v~~~~~-~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~~vl~G~N~~IfAY 181 (641)
+|+|+|||||+...+.....+++.++++ .+.+..+...+.|.||+||+++++|++||+.+ .|+|+++++|||+|||||
T Consensus 1 ~V~V~vRvRP~~~~e~~~~~~~~~~~~~~~v~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~ay 80 (321)
T cd01374 1 KIKVSVRVRPLNPRESDNEQVAWSIDNDNTISLEESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAY 80 (321)
T ss_pred CeEEEEEcCcCCcccccCCcceEEECCCCEEEEcCCCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEee
Confidence 6999999999998776555666777665 66666555679999999999999999999986 999999999999999999
Q ss_pred ccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCCccchhhhhcccceeeEeC
Q 006540 182 GQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTD 261 (641)
Q Consensus 182 GqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~~L~i~ed 261 (641)
|||||||||||+|+.+++|||||++++||..+.......|.|++||+|||||+|+|||++... .++++++
T Consensus 81 G~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~----------~l~i~~~ 150 (321)
T cd01374 81 GQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQ----------ELRIRED 150 (321)
T ss_pred cCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCC----------CceEEEC
Confidence 999999999999999999999999999999987777889999999999999999999998753 5899999
Q ss_pred CCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecCCC--CCceEEeEeEEEecCCC
Q 006540 262 AKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDAL--EAKTEVSKLWMVDLGGS 339 (641)
Q Consensus 262 ~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~--~~~~~~skL~lVDLAGS 339 (641)
+.+++++.|++++.|.+++|+..+|..|.++|++++|.+|.+|||||+||+|+|.+..... .+....|+|+|||||||
T Consensus 151 ~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGs 230 (321)
T cd01374 151 PNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGS 230 (321)
T ss_pred CCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999999999876443 25667899999999999
Q ss_pred ccccccCCCcchhhhhhhhhHHHHHHHHHHHHHHhCC--CCccCCCCccchhhhcccCCCcccceEEecCCCCCCHHHhH
Q 006540 340 ERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKR--GHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETI 417 (641)
Q Consensus 340 Er~~kt~a~g~rlkE~~~INkSL~aLg~VI~aL~~~~--~hIPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETl 417 (641)
|+..+.+ .+.+++|+.+||+||.+|++||.+|++++ .||||||||||+||+|+|||||+|+||+||||...+++||+
T Consensus 231 E~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl 309 (321)
T cd01374 231 ERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETL 309 (321)
T ss_pred CccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHH
Confidence 9999998 89999999999999999999999999985 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcc
Q 006540 418 CSLSFAKRARGI 429 (641)
Q Consensus 418 sTLrFA~rar~I 429 (641)
+||+||+|+++|
T Consensus 310 ~TL~~a~r~~~i 321 (321)
T cd01374 310 NTLKFASRAKKV 321 (321)
T ss_pred HHHHHHHHHhcC
Confidence 999999999986
No 16
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.5e-77 Score=642.48 Aligned_cols=327 Identities=38% Similarity=0.570 Sum_probs=293.9
Q ss_pred CCEEEEEEeCCCCcccCC-cccCcEEecC--CEEEEEeCC----ceEEEEeceeecCCCCchhhHhhh-HHHHHHhhcCc
Q 006540 103 GCIRVFCRVRSFLVTGRR-VIHEPVLTEL--EKVVVRSGG----SKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGH 174 (641)
Q Consensus 103 G~IrV~~RvRP~~~~e~~-~~~~~v~~~~--~~v~v~~~~----~~~~F~FD~VF~~~atQ~eVf~~v-~plV~~vl~G~ 174 (641)
+||+|+|||||+...|.. ....++.+.+ ..|.+.... ..+.|.||+||+++++|++||+.+ .|+|+++++||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~ 81 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGY 81 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 699999999999887643 2344455543 456665432 458999999999999999999986 99999999999
Q ss_pred ceeEEecccCCCCcceeecCCC-----------CCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCC
Q 006540 175 NVCVLAYGQTGTGKTFTMDGTS-----------DQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKP 243 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM~G~~-----------~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~V~DLL~~~~ 243 (641)
|+||||||||||||||||+|+. +.+|||||++++||+.+... ...|.|++||+|||||+|+|||++..
T Consensus 82 n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~~~~ 160 (352)
T cd01364 82 NCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ-NTEYSVKVSYLELYNEELFDLLSSES 160 (352)
T ss_pred eEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc-cceeEEEEEEEEeeCCeeeeCCCCcc
Confidence 9999999999999999999974 34899999999999988765 67899999999999999999999764
Q ss_pred ccchhhhhcccceeeEeC--CCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecCC
Q 006540 244 VFKAYEAATRCNLNIQTD--AKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA 321 (641)
Q Consensus 244 ~~~~~~~~~~~~L~i~ed--~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~ 321 (641)
. ....+.++++ ..++++|.|++++.|.+++|+..++..|.++|++++|.+|..|||||+||+|+|.+....
T Consensus 161 ~-------~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~ 233 (352)
T cd01364 161 D-------LNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETT 233 (352)
T ss_pred c-------cCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccC
Confidence 2 2336899999 689999999999999999999999999999999999999999999999999999876543
Q ss_pred C--CCceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHHHHHHHHHHHHHHhCCCCccCCCCccchhhhcccCCCcc
Q 006540 322 L--EAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSK 399 (641)
Q Consensus 322 ~--~~~~~~skL~lVDLAGSEr~~kt~a~g~rlkE~~~INkSL~aLg~VI~aL~~~~~hIPYRdSKLT~LLqdsLgGnsk 399 (641)
. ......|+|+||||||||+..+.++.+.+++|+..||+||.+|++||.+|..+..|||||+||||+||+|+|||||+
T Consensus 234 ~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~ 313 (352)
T cd01364 234 ISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTK 313 (352)
T ss_pred CCCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCce
Confidence 2 23356799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEecCCCCCCHHHhHHHHHHHHHhhcccccccccH
Q 006540 400 VLMLVHASPCEEDVGETICSLSFAKRARGIESNRELSE 437 (641)
Q Consensus 400 T~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~~~~ 437 (641)
|+||+||||+..+++||++||+||+||++|+|.|.+|.
T Consensus 314 t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 314 TSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 99999999999999999999999999999999998875
No 17
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=1.7e-77 Score=635.65 Aligned_cols=316 Identities=40% Similarity=0.605 Sum_probs=291.1
Q ss_pred CCEEEEEEeCCCCcccC-CcccCcEEecC-CEEEEEeCCceEEEEeceeecCCCCchhhHhhh-HHHHHHhhcCcceeEE
Q 006540 103 GCIRVFCRVRSFLVTGR-RVIHEPVLTEL-EKVVVRSGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNVCVL 179 (641)
Q Consensus 103 G~IrV~~RvRP~~~~e~-~~~~~~v~~~~-~~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~~vl~G~N~~If 179 (641)
.+|+|+|||||+...+. .+...++.+.+ +.+.+......+.|.||+||+++++|++||+.+ .|+|+++++|||+|||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ 81 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIF 81 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEE
Confidence 38999999999988663 33455566554 477787766779999999999999999999986 9999999999999999
Q ss_pred ecccCCCCcceeecCCCC---CCCchhHHHHHHHHHHhcCC-CceEEEEEeEEEEecceeeecCCCCCccchhhhhcccc
Q 006540 180 AYGQTGTGKTFTMDGTSD---QPGIVPRALEELFRQAALDN-SSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCN 255 (641)
Q Consensus 180 AYGqTGSGKTyTM~G~~~---~~GIIpRal~~LF~~~~~~~-~~~~~v~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~~ 255 (641)
|||||||||||||+|+.. ++|||||++++||+.+.... ...|.|++||+|||||.++|||++... .
T Consensus 82 ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~----------~ 151 (325)
T cd01369 82 AYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKD----------N 151 (325)
T ss_pred EeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccC----------C
Confidence 999999999999999987 89999999999999876543 568999999999999999999987643 5
Q ss_pred eeeEeCCCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecCCCCCceEEeEeEEEe
Q 006540 256 LNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVD 335 (641)
Q Consensus 256 L~i~ed~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~lVD 335 (641)
+.+++++.++++|+|++++.|.|.+|+..+|..|.++|++++|.+|..|||||+||+|+|.+.+... .....|+|+|||
T Consensus 152 l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~-~~~~~s~l~~VD 230 (325)
T cd01369 152 LQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVET-GSKKRGKLFLVD 230 (325)
T ss_pred ceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCC-CCEEEEEEEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999998876544 566789999999
Q ss_pred cCCCccccccCCCcchhhhhhhhhHHHHHHHHHHHHHHhCC-CCccCCCCccchhhhcccCCCcccceEEecCCCCCCHH
Q 006540 336 LGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKR-GHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVG 414 (641)
Q Consensus 336 LAGSEr~~kt~a~g~rlkE~~~INkSL~aLg~VI~aL~~~~-~hIPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ 414 (641)
|||||+..++++.|.+++|+..||+||++|++||.+|.++. .||||||||||+||+|+|||+|+|+||+||||+..+++
T Consensus 231 LAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~ 310 (325)
T cd01369 231 LAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNES 310 (325)
T ss_pred CCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHH
Confidence 99999999999999999999999999999999999999887 99999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHhhcc
Q 006540 415 ETICSLSFAKRARGI 429 (641)
Q Consensus 415 ETlsTLrFA~rar~I 429 (641)
||++||+||+|||+|
T Consensus 311 eTl~TL~~a~r~~~i 325 (325)
T cd01369 311 ETLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHHHHHHhhcC
Confidence 999999999999986
No 18
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=4.4e-77 Score=633.22 Aligned_cols=323 Identities=50% Similarity=0.756 Sum_probs=297.5
Q ss_pred CCCEEEEEEeCCCCcccCCcccCcEEecC---CEEEEEeC-CceEEEEeceeecCCCCchhhHhhhHHHHHHhhcCccee
Q 006540 102 KGCIRVFCRVRSFLVTGRRVIHEPVLTEL---EKVVVRSG-GSKKEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVC 177 (641)
Q Consensus 102 kG~IrV~~RvRP~~~~e~~~~~~~v~~~~---~~v~v~~~-~~~~~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~ 177 (641)
||+|+|+|||||+...+......++.+.+ ..+.+... ...+.|.||+||+++++|++||+.+.|+|+++++|+|+|
T Consensus 1 ~~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G~~~~ 80 (329)
T cd01366 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDGYNVC 80 (329)
T ss_pred CCCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCCCceE
Confidence 69999999999999877544445555543 45666654 566899999999999999999999999999999999999
Q ss_pred EEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCC--CceEEEEEeEEEEecceeeecCCCCCccchhhhhcccc
Q 006540 178 VLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDN--SSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCN 255 (641)
Q Consensus 178 IfAYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~--~~~~~v~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~~ 255 (641)
|||||+|||||||||+|+.+++|||||++++||..+.... ++.|.|.+||+|||||+++|||++... .+..
T Consensus 81 i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~-------~~~~ 153 (329)
T cd01366 81 IFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPA-------PKKK 153 (329)
T ss_pred EEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcC-------CCCc
Confidence 9999999999999999999999999999999999876554 589999999999999999999997641 2346
Q ss_pred eeeEeCCCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecCCCCCceEEeEeEEEe
Q 006540 256 LNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVD 335 (641)
Q Consensus 256 L~i~ed~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~lVD 335 (641)
++|++++.+++++.|++++.|.+++|+..++..|.++|.+++|.+|..|||||+||+|+|.+.+... +....|+|+|||
T Consensus 154 l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~-~~~~~s~l~~VD 232 (329)
T cd01366 154 LEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQT-GEQTRGKLNLVD 232 (329)
T ss_pred eEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCC-CcEEEEEEEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999876553 667889999999
Q ss_pred cCCCccccccCCCcchhhhhhhhhHHHHHHHHHHHHHHhCCCCccCCCCccchhhhcccCCCcccceEEecCCCCCCHHH
Q 006540 336 LGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGE 415 (641)
Q Consensus 336 LAGSEr~~kt~a~g~rlkE~~~INkSL~aLg~VI~aL~~~~~hIPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~E 415 (641)
|||||+..+.++.|.+++|+..||+||.+|++||.+|+.+..|||||+||||+||+|+|||+++|+||+||||...+++|
T Consensus 233 LaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~e 312 (329)
T cd01366 233 LAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSE 312 (329)
T ss_pred CCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhccccc
Q 006540 416 TICSLSFAKRARGIESN 432 (641)
Q Consensus 416 TlsTLrFA~rar~I~~~ 432 (641)
|++||+||+|+++|+++
T Consensus 313 tl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 313 TLCSLRFASRVRSVELG 329 (329)
T ss_pred HHHHHHHHHHhhcccCC
Confidence 99999999999999874
No 19
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=3.4e-77 Score=635.55 Aligned_cols=317 Identities=39% Similarity=0.570 Sum_probs=288.4
Q ss_pred CEEEEEEeCCCCcccCC-cccCcEEec--CCEEEEEeC-----CceEEEEeceeecCCCCchhhHhhh-HHHHHHhhcCc
Q 006540 104 CIRVFCRVRSFLVTGRR-VIHEPVLTE--LEKVVVRSG-----GSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGH 174 (641)
Q Consensus 104 ~IrV~~RvRP~~~~e~~-~~~~~v~~~--~~~v~v~~~-----~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~~vl~G~ 174 (641)
+|+|+|||||+...+.. ....++.++ ...+.+... ...+.|.||+||+++++|++||+.+ .|+|+++++||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~ 81 (333)
T cd01371 2 NVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGY 81 (333)
T ss_pred CeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCCC
Confidence 79999999999986644 334455554 345555543 2358999999999999999999985 99999999999
Q ss_pred ceeEEecccCCCCcceeecCCCC---CCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCCccchhhhh
Q 006540 175 NVCVLAYGQTGTGKTFTMDGTSD---QPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAA 251 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM~G~~~---~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~V~DLL~~~~~~~~~~~~ 251 (641)
|+||||||||||||||||+|+.. ++|||||++++||+.+.......|.|.+||+|||||+|+|||++...
T Consensus 82 n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~------- 154 (333)
T cd01371 82 NGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQK------- 154 (333)
T ss_pred ceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCC-------
Confidence 99999999999999999999887 99999999999999988777788999999999999999999987542
Q ss_pred cccceeeEeCCCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecCC--CCCceEEe
Q 006540 252 TRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA--LEAKTEVS 329 (641)
Q Consensus 252 ~~~~L~i~ed~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~--~~~~~~~s 329 (641)
..+.+++++.++++|.|++++.|.+++++..++..|.++|++++|.+|..|||||+||+|+|.+.+.. .......|
T Consensus 155 --~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s 232 (333)
T cd01371 155 --KKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVG 232 (333)
T ss_pred --CceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEE
Confidence 25899999999999999999999999999999999999999999999999999999999999876543 23556789
Q ss_pred EeEEEecCCCccccccCCCcchhhhhhhhhHHHHHHHHHHHHHHhCCC-CccCCCCccchhhhcccCCCcccceEEecCC
Q 006540 330 KLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRG-HVPYRNSKLTQILRDSLGDGSKVLMLVHASP 408 (641)
Q Consensus 330 kL~lVDLAGSEr~~kt~a~g~rlkE~~~INkSL~aLg~VI~aL~~~~~-hIPYRdSKLT~LLqdsLgGnskT~mI~~VSP 408 (641)
+|+||||||||+..++++.|.+++|+..||+||.+|++||.+|.++.. ||||||||||+||+|+|||||+|+||+||+|
T Consensus 233 ~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP 312 (333)
T cd01371 233 KLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGP 312 (333)
T ss_pred EEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCC
Confidence 999999999999999999999999999999999999999999998875 9999999999999999999999999999999
Q ss_pred CCCCHHHhHHHHHHHHHhhcc
Q 006540 409 CEEDVGETICSLSFAKRARGI 429 (641)
Q Consensus 409 ~~~~~~ETlsTLrFA~rar~I 429 (641)
...+++||++||+||+|||+|
T Consensus 313 ~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 313 ADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred ccccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999987
No 20
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1.9e-76 Score=631.12 Aligned_cols=317 Identities=40% Similarity=0.617 Sum_probs=285.9
Q ss_pred CEEEEEEeCCCCcccCCc-ccCcEEecCC--EEEEEeCCceEEEEeceeecCCCCchhhHhhh-HHHHHHhhcCcceeEE
Q 006540 104 CIRVFCRVRSFLVTGRRV-IHEPVLTELE--KVVVRSGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNVCVL 179 (641)
Q Consensus 104 ~IrV~~RvRP~~~~e~~~-~~~~v~~~~~--~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~~vl~G~N~~If 179 (641)
+|+|+|||||+...+... ...++.+.+. .+.+. ..+.|.||+||+++++|++||+.+ .|+|+++++|||+|||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~---~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ 78 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVG---TDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVL 78 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEec---CCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCcccee
Confidence 699999999999766433 3345555443 34432 257899999999999999999986 8999999999999999
Q ss_pred ecccCCCCcceeecCCC------CCCCchhHHHHHHHHHHhcCC-CceEEEEEeEEEEecceeeecCCCCCccchhhhhc
Q 006540 180 AYGQTGTGKTFTMDGTS------DQPGIVPRALEELFRQAALDN-SSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAAT 252 (641)
Q Consensus 180 AYGqTGSGKTyTM~G~~------~~~GIIpRal~~LF~~~~~~~-~~~~~v~vS~lEIYnE~V~DLL~~~~~~~~~~~~~ 252 (641)
|||||||||||||+|+. +++|||||++++||+.+.... ...|.|.+||+|||||+|+|||++... .
T Consensus 79 ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~-------~ 151 (341)
T cd01372 79 AYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTS-------E 151 (341)
T ss_pred eecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCccc-------C
Confidence 99999999999999974 579999999999999887655 478999999999999999999987641 1
Q ss_pred ccceeeEeCCCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecCC---------CC
Q 006540 253 RCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA---------LE 323 (641)
Q Consensus 253 ~~~L~i~ed~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~---------~~ 323 (641)
...+.|++++.++++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.... ..
T Consensus 152 ~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~ 231 (341)
T cd01372 152 KSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDK 231 (341)
T ss_pred CCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCC
Confidence 236899999999999999999999999999999999999999999999999999999999999887653 23
Q ss_pred CceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHHHHHHHHHHHHHHhCC---CCccCCCCccchhhhcccCCCccc
Q 006540 324 AKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKR---GHVPYRNSKLTQILRDSLGDGSKV 400 (641)
Q Consensus 324 ~~~~~skL~lVDLAGSEr~~kt~a~g~rlkE~~~INkSL~aLg~VI~aL~~~~---~hIPYRdSKLT~LLqdsLgGnskT 400 (641)
.....|+|+||||||||+..++++.|++++|+..||+||.+|++||.+|..++ .|||||+||||+||+|+||||++|
T Consensus 232 ~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t 311 (341)
T cd01372 232 NSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHT 311 (341)
T ss_pred CceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceE
Confidence 55678999999999999999999999999999999999999999999999876 799999999999999999999999
Q ss_pred ceEEecCCCCCCHHHhHHHHHHHHHhhccc
Q 006540 401 LMLVHASPCEEDVGETICSLSFAKRARGIE 430 (641)
Q Consensus 401 ~mI~~VSP~~~~~~ETlsTLrFA~rar~I~ 430 (641)
+||+||||...+++||++||+||+||++|+
T Consensus 312 ~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 312 LMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999986
No 21
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=5.8e-76 Score=626.42 Aligned_cols=315 Identities=40% Similarity=0.574 Sum_probs=280.7
Q ss_pred CEEEEEEeCCCCcccCCcccCcEEec--CCEEEEE-----------eCCceEEEEeceeecCCCCchhhHhhh-HHHHHH
Q 006540 104 CIRVFCRVRSFLVTGRRVIHEPVLTE--LEKVVVR-----------SGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRS 169 (641)
Q Consensus 104 ~IrV~~RvRP~~~~e~~~~~~~v~~~--~~~v~v~-----------~~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~~ 169 (641)
.|+|+|||||+...+.. .+.++ ...+.+. .....+.|.||+||++ ++|++||+.+ .|+|++
T Consensus 1 ~i~V~vRvRP~~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~ 75 (334)
T cd01375 1 TIQVFVRVRPTPTKQGS----SIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDS 75 (334)
T ss_pred CeEEEEECCCCCCCCCc----cEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHH
Confidence 48999999999874332 12222 2333332 2334578999999999 9999999997 999999
Q ss_pred hhcCcceeEEecccCCCCcceeecCCC---CCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCCccc
Q 006540 170 ALDGHNVCVLAYGQTGTGKTFTMDGTS---DQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFK 246 (641)
Q Consensus 170 vl~G~N~~IfAYGqTGSGKTyTM~G~~---~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~V~DLL~~~~~~~ 246 (641)
+++|||+||||||||||||||||+|+. .++|||||++++||+.++...+..|.|++||+|||||+|+|||++.+..
T Consensus 76 ~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~- 154 (334)
T cd01375 76 ALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEA- 154 (334)
T ss_pred HhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccc-
Confidence 999999999999999999999999976 4789999999999999988878899999999999999999999987531
Q ss_pred hhhhhcccceeeEeCCCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecCC-CCCc
Q 006540 247 AYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA-LEAK 325 (641)
Q Consensus 247 ~~~~~~~~~L~i~ed~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~-~~~~ 325 (641)
......+.|++++.++++|.|++++.|.+++|++.++..|.++|.+++|.+|..|||||+||+|+|.+.... ....
T Consensus 155 ---~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~ 231 (334)
T cd01375 155 ---LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEV 231 (334)
T ss_pred ---cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCc
Confidence 112346899999999999999999999999999999999999999999999999999999999999976322 2245
Q ss_pred eEEeEeEEEecCCCccccccCCCcchhhhhhhhhHHHHHHHHHHHHHHhCC-CCccCCCCccchhhhcccCCCcccceEE
Q 006540 326 TEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKR-GHVPYRNSKLTQILRDSLGDGSKVLMLV 404 (641)
Q Consensus 326 ~~~skL~lVDLAGSEr~~kt~a~g~rlkE~~~INkSL~aLg~VI~aL~~~~-~hIPYRdSKLT~LLqdsLgGnskT~mI~ 404 (641)
...|+|+||||||||+..++++.+..++|+..||+||++|++||.+|+++. .||||||||||+||+|+|||||+|+||+
T Consensus 232 ~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~ 311 (334)
T cd01375 232 VRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLA 311 (334)
T ss_pred eEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEE
Confidence 678999999999999999999999999999999999999999999999988 9999999999999999999999999999
Q ss_pred ecCCCCCCHHHhHHHHHHHHHhh
Q 006540 405 HASPCEEDVGETICSLSFAKRAR 427 (641)
Q Consensus 405 ~VSP~~~~~~ETlsTLrFA~rar 427 (641)
||||...+++||++||+||+|++
T Consensus 312 ~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 312 TIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred EeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999985
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=9e-73 Score=601.11 Aligned_cols=322 Identities=44% Similarity=0.664 Sum_probs=294.0
Q ss_pred CEEEEEEeCCCCcccCC-cccCcEEecCC---EEEEEeC---CceEEEEeceeecCCCCchhhHhhh-HHHHHHhhcCcc
Q 006540 104 CIRVFCRVRSFLVTGRR-VIHEPVLTELE---KVVVRSG---GSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHN 175 (641)
Q Consensus 104 ~IrV~~RvRP~~~~e~~-~~~~~v~~~~~---~v~v~~~---~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~~vl~G~N 175 (641)
+|+|+|||||+...+.. ....++.+.++ .+.+... +..+.|.||+||+++++|++||+.+ .|+|+.+++|+|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~ 80 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYN 80 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCc
Confidence 68999999999887643 34556666443 6666543 3458999999999999999999986 899999999999
Q ss_pred eeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCC-CceEEEEEeEEEEecceeeecCCCCCccchhhhhccc
Q 006540 176 VCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDN-SSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRC 254 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~-~~~~~v~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~ 254 (641)
+||||||+|||||||||+|+.+++|||||++++||+.+.... ...|.|++||+|||+|+|+|||++...
T Consensus 81 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~---------- 150 (335)
T smart00129 81 ATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPK---------- 150 (335)
T ss_pred eeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCC----------
Confidence 999999999999999999999999999999999999886544 678999999999999999999987643
Q ss_pred ceeeEeCCCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEe--cCCCCCceEEeEeE
Q 006540 255 NLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRH--GDALEAKTEVSKLW 332 (641)
Q Consensus 255 ~L~i~ed~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~--~~~~~~~~~~skL~ 332 (641)
.+.+++++.+++++.|++++.|.+++|+..++..|.++|.+++|.+|..|||||+||+|+|.+. +.. ......|+|+
T Consensus 151 ~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~-~~~~~~s~l~ 229 (335)
T smart00129 151 KLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSS-SGSGKASKLN 229 (335)
T ss_pred CcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCC-CCCEEEEEEE
Confidence 5899999999999999999999999999999999999999999999999999999999999965 333 3667889999
Q ss_pred EEecCCCccccccCCCcchhhhhhhhhHHHHHHHHHHHHHHh--CCCCccCCCCccchhhhcccCCCcccceEEecCCCC
Q 006540 333 MVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRR--KRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCE 410 (641)
Q Consensus 333 lVDLAGSEr~~kt~a~g~rlkE~~~INkSL~aLg~VI~aL~~--~~~hIPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~ 410 (641)
||||||+|+..+.++.|.+++|+..||+||.+|++||.+|++ +..|||||+|+||+||+++|||+++|+||+||||..
T Consensus 230 ~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~ 309 (335)
T smart00129 230 LVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSL 309 (335)
T ss_pred EEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCc
Confidence 999999999999999999999999999999999999999998 577999999999999999999999999999999999
Q ss_pred CCHHHhHHHHHHHHHhhccccccccc
Q 006540 411 EDVGETICSLSFAKRARGIESNRELS 436 (641)
Q Consensus 411 ~~~~ETlsTLrFA~rar~I~~~~~~~ 436 (641)
.+++||++||+||+++++|++.|.++
T Consensus 310 ~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 310 SNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred cchHHHHHHHHHHHHHhhcccCCCcC
Confidence 99999999999999999999999763
No 23
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1e-72 Score=598.45 Aligned_cols=316 Identities=42% Similarity=0.646 Sum_probs=292.3
Q ss_pred CEEEEEEeCCCCcccCCcccCcEEecC-CEEEEEeCC-----ceEEEEeceeecCCCCchhhHhhh-HHHHHHhhcCcce
Q 006540 104 CIRVFCRVRSFLVTGRRVIHEPVLTEL-EKVVVRSGG-----SKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNV 176 (641)
Q Consensus 104 ~IrV~~RvRP~~~~e~~~~~~~v~~~~-~~v~v~~~~-----~~~~F~FD~VF~~~atQ~eVf~~v-~plV~~vl~G~N~ 176 (641)
+|+|||||||+...+......++.+++ +.+.+.... ..+.|.||+||+++++|++||+.+ .|+|+++++|+|+
T Consensus 1 ~i~V~vRvrP~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~ 80 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNG 80 (328)
T ss_pred CeEEEEEcCCCCcccccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 699999999999877556677888877 788887643 358999999999999999999986 8999999999999
Q ss_pred eEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCC--CceEEEEEeEEEEecceeeecCCCCCccchhhhhccc
Q 006540 177 CVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDN--SSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRC 254 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~--~~~~~v~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~ 254 (641)
||||||||||||||||+|+.+++|||||++++||..+.... ...|.|.+||+|||+|+|+|||++... ..
T Consensus 81 ~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~--------~~ 152 (328)
T cd00106 81 TIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPP--------SK 152 (328)
T ss_pred eEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCC--------CC
Confidence 99999999999999999999999999999999999887665 578999999999999999999998621 23
Q ss_pred ceeeEeCCCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecCCCCC-ceEEeEeEE
Q 006540 255 NLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEA-KTEVSKLWM 333 (641)
Q Consensus 255 ~L~i~ed~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~-~~~~skL~l 333 (641)
.+.+++++.+++++.|++++.|.+++|++.++..|.++|.++.|.+|..|||||+||+|+|......... ....|+|+|
T Consensus 153 ~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~ 232 (328)
T cd00106 153 PLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNL 232 (328)
T ss_pred CcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999987654321 377899999
Q ss_pred EecCCCccccccCCCcchhhhhhhhhHHHHHHHHHHHHHHhCC--CCccCCCCccchhhhcccCCCcccceEEecCCCCC
Q 006540 334 VDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKR--GHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEE 411 (641)
Q Consensus 334 VDLAGSEr~~kt~a~g~rlkE~~~INkSL~aLg~VI~aL~~~~--~hIPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~ 411 (641)
|||||+|+..+.+..+.+++|+..||+||.+|++||.+|+.+. .|||||+||||+||+|+|||+++|+||+||||...
T Consensus 233 VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~ 312 (328)
T cd00106 233 VDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSE 312 (328)
T ss_pred EECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchh
Confidence 9999999999999999999999999999999999999999988 99999999999999999999999999999999999
Q ss_pred CHHHhHHHHHHHHHhh
Q 006540 412 DVGETICSLSFAKRAR 427 (641)
Q Consensus 412 ~~~ETlsTLrFA~rar 427 (641)
+++||++||+||+|||
T Consensus 313 ~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 313 NYDETLSTLRFASRAK 328 (328)
T ss_pred hHHHHHHHHHHHHhcC
Confidence 9999999999999985
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=3.7e-72 Score=595.83 Aligned_cols=314 Identities=43% Similarity=0.646 Sum_probs=275.0
Q ss_pred EeCCCCcccCCcc-cCcEEecC--CEEE-----EEeCCceEEEEeceeecCCCCchhhHhhh-HHHHHHhhcCcceeEEe
Q 006540 110 RVRSFLVTGRRVI-HEPVLTEL--EKVV-----VRSGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNVCVLA 180 (641)
Q Consensus 110 RvRP~~~~e~~~~-~~~v~~~~--~~v~-----v~~~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~~vl~G~N~~IfA 180 (641)
||||+...+.... ...+.... .... .......+.|.||+||+++++|++||+.+ .|+|+++++|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 8999998664332 23333221 1111 12345568999999999999999999985 99999999999999999
Q ss_pred cccCCCCcceeecCC--CCCCCchhHHHHHHHHHHhcCCC---ceEEEEEeEEEEecceeeecCCCCCccchhhhhcccc
Q 006540 181 YGQTGTGKTFTMDGT--SDQPGIVPRALEELFRQAALDNS---SSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCN 255 (641)
Q Consensus 181 YGqTGSGKTyTM~G~--~~~~GIIpRal~~LF~~~~~~~~---~~~~v~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~~ 255 (641)
||||||||||||+|+ ..++|||||++++||..+..... +.|.|+|||+|||||+|+|||++... .....
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~------~~~~~ 154 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNS------KSRKP 154 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSS------STTSE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccc------ccccc
Confidence 999999999999999 89999999999999998876543 68999999999999999999998741 11236
Q ss_pred eeeEeCCCCC-eEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecCCCCCc---eEEeEe
Q 006540 256 LNIQTDAKGT-VEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAK---TEVSKL 331 (641)
Q Consensus 256 L~i~ed~~g~-v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~---~~~skL 331 (641)
+.|++++..+ ++|.|++++.|.+++++..+|..|.++|.++.|.+|..|||||+||+|+|.+........ ...|+|
T Consensus 155 l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l 234 (335)
T PF00225_consen 155 LKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRL 234 (335)
T ss_dssp BEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEE
T ss_pred cceeeccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecce
Confidence 8999999865 999999999999999999999999999999999999999999999999999886655332 578999
Q ss_pred EEEecCCCccccccCC-CcchhhhhhhhhHHHHHHHHHHHHHHhC--CCCccCCCCccchhhhcccCCCcccceEEecCC
Q 006540 332 WMVDLGGSERVLKTGA-TGQTLDEGRAINLSLSALADVIAALRRK--RGHVPYRNSKLTQILRDSLGDGSKVLMLVHASP 408 (641)
Q Consensus 332 ~lVDLAGSEr~~kt~a-~g~rlkE~~~INkSL~aLg~VI~aL~~~--~~hIPYRdSKLT~LLqdsLgGnskT~mI~~VSP 408 (641)
+||||||+|+..+.++ .+.+++|+..||+||.+|++||.+|+.+ ..|||||+||||+||+|+|||||+|+||+||||
T Consensus 235 ~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp 314 (335)
T PF00225_consen 235 TFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSP 314 (335)
T ss_dssp EEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-S
T ss_pred eeeecccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCC
Confidence 9999999999999987 4788999999999999999999999998 899999999999999999999999999999999
Q ss_pred CCCCHHHhHHHHHHHHHhhcc
Q 006540 409 CEEDVGETICSLSFAKRARGI 429 (641)
Q Consensus 409 ~~~~~~ETlsTLrFA~rar~I 429 (641)
...+++||++||+||.++++|
T Consensus 315 ~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 315 SSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp BGGGHHHHHHHHHHHHHHTTE
T ss_pred ccccHHHHHHHHHHHHHHcCC
Confidence 999999999999999999987
No 25
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-67 Score=581.52 Aligned_cols=328 Identities=34% Similarity=0.532 Sum_probs=286.4
Q ss_pred cCCCCEEEEEEeCCCCcccCCcccCcEEecCCEEEEEe----------CC--ceEEEEeceeecCCCCchhhHhhh-HHH
Q 006540 100 DIKGCIRVFCRVRSFLVTGRRVIHEPVLTELEKVVVRS----------GG--SKKEFGFDKVFNQAASQEDVFVEV-EPI 166 (641)
Q Consensus 100 elkG~IrV~~RvRP~~~~e~~~~~~~v~~~~~~v~v~~----------~~--~~~~F~FD~VF~~~atQ~eVf~~v-~pl 166 (641)
+.+..|.|+||+||+... .....++...+..+|++.. ++ ..+.|.|-+||+|+++|.+||+.+ .|+
T Consensus 28 ~~~d~v~v~~rvrP~~~~-~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~pl 106 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSDA-SEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPL 106 (809)
T ss_pred hhhcchheeEeecCCCCC-ccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHHH
Confidence 456789999999998852 1123334445566666651 12 238999999999999999999986 999
Q ss_pred HHHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHh--------------------------------
Q 006540 167 LRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAA-------------------------------- 214 (641)
Q Consensus 167 V~~vl~G~N~~IfAYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~-------------------------------- 214 (641)
|.+.+.|.|..+|+||-|||||||||+|+++++||+||+++-||..+.
T Consensus 107 V~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~ 186 (809)
T KOG0247|consen 107 VKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKRE 186 (809)
T ss_pred HHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999995221
Q ss_pred ---------------------------------cCCCceEEEEEeEEEEecceeeecCCCCCccchhhhhcccceeeEeC
Q 006540 215 ---------------------------------LDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTD 261 (641)
Q Consensus 215 ---------------------------------~~~~~~~~v~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~~L~i~ed 261 (641)
.+.+..|.|+|||+|||||-|||||.+.+..+... ....+++|
T Consensus 187 ~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~----~~~ll~~d 262 (809)
T KOG0247|consen 187 AMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQ----KLKLLRED 262 (809)
T ss_pred hccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhh----hhhhhhhc
Confidence 01234689999999999999999998876533221 12567899
Q ss_pred CCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecCC-CCCceEEeEeEEEecCCCc
Q 006540 262 AKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDA-LEAKTEVSKLWMVDLGGSE 340 (641)
Q Consensus 262 ~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~-~~~~~~~skL~lVDLAGSE 340 (641)
.+|..||.|+++|.|.+.+|++++|..|.++|++++|.+|..|||||+||+|.|.+.... .......|.|.||||||||
T Consensus 263 ~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSE 342 (809)
T KOG0247|consen 263 TNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSE 342 (809)
T ss_pred cCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccch
Confidence 999999999999999999999999999999999999999999999999999999887655 3367788999999999999
Q ss_pred cccccCCCcchhhhhhhhhHHHHHHHHHHHHHHhC-----CCCccCCCCccchhhhcccCCCcccceEEecCCCCCCHHH
Q 006540 341 RVLKTGATGQTLDEGRAINLSLSALADVIAALRRK-----RGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGE 415 (641)
Q Consensus 341 r~~kt~a~g~rlkE~~~INkSL~aLg~VI~aL~~~-----~~hIPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~E 415 (641)
|..+++..|.||+||++||.||.+||.||.+|+++ +.+|||||||||++++.+|.|..+++||+||+|.+++|+|
T Consensus 343 Rt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdE 422 (809)
T KOG0247|consen 343 RTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDE 422 (809)
T ss_pred hcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHH
Confidence 99999999999999999999999999999999864 3789999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhccccc
Q 006540 416 TICSLSFAKRARGIESN 432 (641)
Q Consensus 416 TlsTLrFA~rar~I~~~ 432 (641)
+++.|+||.-+..|...
T Consensus 423 nl~vlkFaeiaq~v~v~ 439 (809)
T KOG0247|consen 423 NLNVLKFAEIAQEVEVA 439 (809)
T ss_pred HHHHHHHHHhccccccc
Confidence 99999999999998754
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-67 Score=566.43 Aligned_cols=313 Identities=33% Similarity=0.470 Sum_probs=277.4
Q ss_pred CEEEEEEeCCCCcccCCc-ccCcEEecC-CEEEEEe---------CCceEEEEeceeecCCCCchhhHhh-hHHHHHHhh
Q 006540 104 CIRVFCRVRSFLVTGRRV-IHEPVLTEL-EKVVVRS---------GGSKKEFGFDKVFNQAASQEDVFVE-VEPILRSAL 171 (641)
Q Consensus 104 ~IrV~~RvRP~~~~e~~~-~~~~v~~~~-~~v~v~~---------~~~~~~F~FD~VF~~~atQ~eVf~~-v~plV~~vl 171 (641)
.|.|.||=||++..+... ...++.+.. +.+++.. .-..+.|.||++||+.++++.||.. ++|||..+|
T Consensus 209 rI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~IF 288 (676)
T KOG0246|consen 209 RICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKTIF 288 (676)
T ss_pred eEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHHHH
Confidence 699999999999866332 234455533 3333322 1234789999999999999999986 599999999
Q ss_pred cCcceeEEecccCCCCcceeecCCCC------CCCchhHHHHHHHHHHhcCC--CceEEEEEeEEEEecceeeecCCCCC
Q 006540 172 DGHNVCVLAYGQTGTGKTFTMDGTSD------QPGIVPRALEELFRQAALDN--SSSVTFSMSMLEVYMGSVRDLLAPKP 243 (641)
Q Consensus 172 ~G~N~~IfAYGqTGSGKTyTM~G~~~------~~GIIpRal~~LF~~~~~~~--~~~~~v~vS~lEIYnE~V~DLL~~~~ 243 (641)
+|--+|+||||||||||||||.|+.. ..||..++.+++|..+.... ...+.|+++|||||+.+|||||+.+.
T Consensus 289 ~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~k~ 368 (676)
T KOG0246|consen 289 EGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLNDKK 368 (676)
T ss_pred hCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcccc
Confidence 99999999999999999999988643 45999999999999877644 56789999999999999999998754
Q ss_pred ccchhhhhcccceeeEeCCCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecCCCC
Q 006540 244 VFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALE 323 (641)
Q Consensus 244 ~~~~~~~~~~~~L~i~ed~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~ 323 (641)
.|.+.+|.++.|.|.||++..|.+.++++.+|+.|+..|+++.|..|..|||||+||+|.+....
T Consensus 369 -----------KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~---- 433 (676)
T KOG0246|consen 369 -----------KLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG---- 433 (676)
T ss_pred -----------ceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC----
Confidence 48999999999999999999999999999999999999999999999999999999999997654
Q ss_pred CceEEeEeEEEecCCCccccccC-CCcchhhhhhhhhHHHHHHHHHHHHHHhCCCCccCCCCccchhhhcccCC-Ccccc
Q 006540 324 AKTEVSKLWMVDLGGSERVLKTG-ATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGD-GSKVL 401 (641)
Q Consensus 324 ~~~~~skL~lVDLAGSEr~~kt~-a~g~rlkE~~~INkSL~aLg~VI~aL~~~~~hIPYRdSKLT~LLqdsLgG-nskT~ 401 (641)
.....|++.||||||+||...+. ++.++..||..|||||+||..||.||.+.+.|+|||.||||++|+|||-| ||+|+
T Consensus 434 ~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTc 513 (676)
T KOG0246|consen 434 EFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTC 513 (676)
T ss_pred cceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceE
Confidence 35678999999999999986654 67789999999999999999999999999999999999999999999988 99999
Q ss_pred eEEecCCCCCCHHHhHHHHHHHHHhhcccc
Q 006540 402 MLVHASPCEEDVGETICSLSFAKRARGIES 431 (641)
Q Consensus 402 mI~~VSP~~~~~~ETlsTLrFA~rar~I~~ 431 (641)
||+||||...+.+.||+|||||.|+|....
T Consensus 514 MIA~ISPg~~ScEhTLNTLRYAdRVKeLsv 543 (676)
T KOG0246|consen 514 MIATISPGISSCEHTLNTLRYADRVKELSV 543 (676)
T ss_pred EEEEeCCCcchhhhhHHHHHHHHHHHhhcC
Confidence 999999999999999999999999998753
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.3e-68 Score=601.73 Aligned_cols=357 Identities=35% Similarity=0.505 Sum_probs=303.4
Q ss_pred eCCCCccc-CCcccCcEEecCCEEEEEeCCceEEEEeceeecCCCCchhhHhh-hHHHHHHhhcCcceeEEecccCCCCc
Q 006540 111 VRSFLVTG-RRVIHEPVLTELEKVVVRSGGSKKEFGFDKVFNQAASQEDVFVE-VEPILRSALDGHNVCVLAYGQTGTGK 188 (641)
Q Consensus 111 vRP~~~~e-~~~~~~~v~~~~~~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~-v~plV~~vl~G~N~~IfAYGqTGSGK 188 (641)
|||+...+ ..++..|+.+.+++..|.- ++...|+||+||+....|.++|+. |.|+++.+++|||++++|||||||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~i-g~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgk 79 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAI-GKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGK 79 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceee-cCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCc
Confidence 68887743 4566667776666555543 345799999999999999999987 59999999999999999999999999
Q ss_pred ceeecCC----CCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCCccchhhhhcccceeeEeCCCC
Q 006540 189 TFTMDGT----SDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKG 264 (641)
Q Consensus 189 TyTM~G~----~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~~L~i~ed~~g 264 (641)
||||.+. .++.|+|||+++.+|..+.......|.|.|||+|||+|.|+|||.|... +.++.+++ ++|
T Consensus 80 Tytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~--------~~~i~~~e-~~g 150 (913)
T KOG0244|consen 80 TYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRL--------KANIKLRE-PKG 150 (913)
T ss_pred eeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhh--------hhceeccc-cCC
Confidence 9999876 3446999999999999987766688999999999999999999985432 23467777 889
Q ss_pred CeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecCCCCCceEEeEeEEEecCCCccccc
Q 006540 265 TVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVDLGGSERVLK 344 (641)
Q Consensus 265 ~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~lVDLAGSEr~~k 344 (641)
++.+.|++++.|.+..++...+..|.-.|++++|+||..|||||+||+|.+.+...........+||+|||||||||.++
T Consensus 151 ~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~kk 230 (913)
T KOG0244|consen 151 EITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVKK 230 (913)
T ss_pred ceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeeccccccccc
Confidence 99999999999999999999999999999999999999999999999999987554444556679999999999999999
Q ss_pred cCCCcchhhhhhhhhHHHHHHHHHHHHHHhCCC--CccCCCCccchhhhcccCCCcccceEEecCCCCCCHHHhHHHHHH
Q 006540 345 TGATGQTLDEGRAINLSLSALADVIAALRRKRG--HVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSF 422 (641)
Q Consensus 345 t~a~g~rlkE~~~INkSL~aLg~VI~aL~~~~~--hIPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETlsTLrF 422 (641)
++++|++++||.+||.+|++||+||+||..... ||||||||||+||||+||||++|+||+||||+..+++||++||+|
T Consensus 231 T~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~y 310 (913)
T KOG0244|consen 231 TKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRY 310 (913)
T ss_pred cccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHH
Confidence 999999999999999999999999999987665 999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccccccHHHHHH----HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 006540 423 AKRARGIESNRELSEDLKKR----REIRMAELEEDMREAE-----AECQNVRNQIKEVESLLSE 477 (641)
Q Consensus 423 A~rar~I~~~~~~~~~~~~~----~~~~i~~L~~el~~l~-----~e~~~l~~qi~~~e~~~~E 477 (641)
|.||++|+|.|.+|.|+... ...+++.|+.++.... +++..+..++..+++.+.+
T Consensus 311 a~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e~~~l~~~~d~ 374 (913)
T KOG0244|consen 311 ADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFENVTLEETLDA 374 (913)
T ss_pred hhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhhhhhhhhhHHH
Confidence 99999999999999865432 1234444444444332 4555555555555544443
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.6e-63 Score=558.45 Aligned_cols=318 Identities=39% Similarity=0.595 Sum_probs=283.2
Q ss_pred CCCEEEEEEeCCCCcccCCcccCcEEec-CCEEEEEeCCceEEEEeceeecCCCCchhhHhhh-HHHHHHhhcCcceeEE
Q 006540 102 KGCIRVFCRVRSFLVTGRRVIHEPVLTE-LEKVVVRSGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALDGHNVCVL 179 (641)
Q Consensus 102 kG~IrV~~RvRP~~~~e~~~~~~~v~~~-~~~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~~vl~G~N~~If 179 (641)
-.+++++++..|-...+ ...... +..+.+. ......|.||+||++.++|++||+.. .|+++++++|||+|||
T Consensus 21 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~Tvf 94 (568)
T COG5059 21 VSDIKSTIRIIPGELGE-----RLINTSKKSHVSLE-KSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVF 94 (568)
T ss_pred ecCceEEEeecCCCcch-----heeecccccccccc-cccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEE
Confidence 36778888888865432 111111 1111111 11257899999999999999999885 9999999999999999
Q ss_pred ecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCC-CceEEEEEeEEEEecceeeecCCCCCccchhhhhcccceee
Q 006540 180 AYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDN-SSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNI 258 (641)
Q Consensus 180 AYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~-~~~~~v~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~~L~i 258 (641)
|||||||||||||.|..+++||||+++.+||+.+.... +..|.|.+||+|||||+++|||.+... .+.+
T Consensus 95 ayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~----------~~~~ 164 (568)
T COG5059 95 AYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEE----------SLNI 164 (568)
T ss_pred EEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccc----------cccc
Confidence 99999999999999999999999999999999876543 567999999999999999999998765 2678
Q ss_pred EeCCCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecCCCCCceEEeEeEEEecCC
Q 006540 259 QTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVDLGG 338 (641)
Q Consensus 259 ~ed~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~lVDLAG 338 (641)
+++..++++|.|++++.+.+.++++.+|+.|..+|.++.|.+|..|||||++|++++.+.+... +....++|+||||||
T Consensus 165 ~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~-~~~~~~~l~lvDLag 243 (568)
T COG5059 165 REDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVS-GTSETSKLSLVDLAG 243 (568)
T ss_pred cccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCc-cceecceEEEEeecc
Confidence 8999999999999999999999999999999999999999999999999999999999887654 444458999999999
Q ss_pred CccccccCCCcchhhhhhhhhHHHHHHHHHHHHHHh--CCCCccCCCCccchhhhcccCCCcccceEEecCCCCCCHHHh
Q 006540 339 SERVLKTGATGQTLDEGRAINLSLSALADVIAALRR--KRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGET 416 (641)
Q Consensus 339 SEr~~kt~a~g~rlkE~~~INkSL~aLg~VI~aL~~--~~~hIPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ET 416 (641)
||++..++..+.+++|+..||+||.+||+||.+|.. +..|||||+||||||||++|||+++|.|||||+|...+++||
T Consensus 244 SE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et 323 (568)
T COG5059 244 SERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEET 323 (568)
T ss_pred ccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHH
Confidence 999999999999999999999999999999999997 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccccccc
Q 006540 417 ICSLSFAKRARGIESNRELS 436 (641)
Q Consensus 417 lsTLrFA~rar~I~~~~~~~ 436 (641)
.+||+||.||+.|++.+..+
T Consensus 324 ~~tL~~a~rak~I~~~~~~~ 343 (568)
T COG5059 324 INTLKFASRAKSIKNKIQVN 343 (568)
T ss_pred HHHHHHHHHHhhcCCccccc
Confidence 99999999999999988887
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=1e-51 Score=405.77 Aligned_cols=177 Identities=49% Similarity=0.752 Sum_probs=168.5
Q ss_pred hHhhhHHHHHHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeec
Q 006540 159 VFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDL 238 (641)
Q Consensus 159 Vf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~V~DL 238 (641)
||+.+.|+|+.+++|||+||||||||||||||||+|+.+++|||||++++
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~------------------------------ 57 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD------------------------------ 57 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH------------------------------
Confidence 99998899999999999999999999999999999999999999999987
Q ss_pred CCCCCccchhhhhcccceeeEeCCCCCeEecCcEEEEcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEe
Q 006540 239 LAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRH 318 (641)
Q Consensus 239 L~~~~~~~~~~~~~~~~L~i~ed~~g~v~V~glt~v~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~ 318 (641)
++.++..|.++|+++.|.+|+.|||||+||+|++.+.
T Consensus 58 -------------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~ 94 (186)
T cd01363 58 -------------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGK 94 (186)
T ss_pred -------------------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEe
Confidence 7889999999999999999999999999999999886
Q ss_pred cCCC--CCceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHHHHHHHHHHHHHHhCCCCccCCCCccchhhhcccCC
Q 006540 319 GDAL--EAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGD 396 (641)
Q Consensus 319 ~~~~--~~~~~~skL~lVDLAGSEr~~kt~a~g~rlkE~~~INkSL~aLg~VI~aL~~~~~hIPYRdSKLT~LLqdsLgG 396 (641)
+... ......|+|+||||||||+..++++.+++++|+..||+||++|++||.+|.+++.||||||||||+||+|+|||
T Consensus 95 ~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g 174 (186)
T cd01363 95 NALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGG 174 (186)
T ss_pred ecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCC
Confidence 5443 24566799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccceEEecCC
Q 006540 397 GSKVLMLVHASP 408 (641)
Q Consensus 397 nskT~mI~~VSP 408 (641)
||+|+||+||||
T Consensus 175 ~~~t~~i~~vsP 186 (186)
T cd01363 175 NSRTLMVACISP 186 (186)
T ss_pred CCeEEEEEEeCc
Confidence 999999999998
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.06 E-value=8e-13 Score=150.61 Aligned_cols=287 Identities=24% Similarity=0.221 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhhhcCCCCEEEEEEeCCCCcccCCcccCcEEe------cCCE
Q 006540 65 ELEQSIINLEGEIVELRL------KKRRLDEKRREALNKILDIKGCIRVFCRVRSFLVTGRRVIHEPVLT------ELEK 132 (641)
Q Consensus 65 el~~~i~~l~~e~~~l~~------~~~~~e~~Rr~lhn~i~elkG~IrV~~RvRP~~~~e~~~~~~~v~~------~~~~ 132 (641)
.+.+.+..|..-|+.|.. ....+...+|.||+.+...+ +++|+|+|+|.......... ...+ -.+.
T Consensus 262 ~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~-~~~~i~~Isp~~~~~~et~~-tL~~a~rak~I~~~ 339 (568)
T COG5059 262 SINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNC-NTRVICTISPSSNSFEETIN-TLKFASRAKSIKNK 339 (568)
T ss_pred hhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCc-cEEEEEEEcCCCCchHHHHH-HHHHHHHHhhcCCc
Confidence 677788888888888875 35678899999999999999 99999999999854221110 0000 0122
Q ss_pred EEEEe----CCceEEEEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHH
Q 006540 133 VVVRS----GGSKKEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEE 208 (641)
Q Consensus 133 v~v~~----~~~~~~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~G~~~~~GIIpRal~~ 208 (641)
+.... ......|.||.+|.+...+..++.....+++..++| +++||++++|+++||. ....++..-.+..
T Consensus 340 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 413 (568)
T COG5059 340 IQVNSSSDSSREIEEIKFDLSEDRSEIEILVFREQSQLSQSSLSG----IFAYMQSLKKETETLK--SRIDLIMKSIISG 413 (568)
T ss_pred ccccCcCcchHHHHHHHhhhhhhhhhhhhHHHHHHHhhhhhhhhh----HHHHHhhhhhhhhccc--chhhhhhhhhhhh
Confidence 22221 122367999999999999999999999999999999 9999999999999994 2334555555577
Q ss_pred HHHHHhcC--CCceEEEEEeEEEEecceeeecCCCCCccchhhhhcccceeeEeCCCCCeEecCcEEEEcCChHHHHHHH
Q 006540 209 LFRQAALD--NSSSVTFSMSMLEVYMGSVRDLLAPKPVFKAYEAATRCNLNIQTDAKGTVEIEGLTEVQIPDFTKARWWY 286 (641)
Q Consensus 209 LF~~~~~~--~~~~~~v~vS~lEIYnE~V~DLL~~~~~~~~~~~~~~~~L~i~ed~~g~v~V~glt~v~V~s~~e~~~ll 286 (641)
.|...... ..|.+...+-++++|-..+.++........... ......++.+. ...++.. .....+...+.
T Consensus 414 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~ 485 (568)
T COG5059 414 TFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKTK--IHKLNKLRHDL-----SSLLSSI-PEETSDRVESE 485 (568)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH--HHHHHHHHHHH-----HHhhhhc-chhhhhhhhhh
Confidence 77754332 266777777777777333333332111100000 00000011100 0011111 11111111122
Q ss_pred HHhhhhccccccCCCCCCCCceEEEEEEEEEecCCCCCceEEeEeEEEecCCCccccccCCCcchhhhhhhhhHHHHHHH
Q 006540 287 NKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVDLGGSERVLKTGATGQTLDEGRAINLSLSALA 366 (641)
Q Consensus 287 ~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~lVDLAGSEr~~kt~a~g~rlkE~~~INkSL~aLg 366 (641)
.+...+..+.+..|.+++++|++|+.......... .... ++.|||||+||. -+.+.|.++++...+|++|..+|
T Consensus 486 -~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~ 559 (568)
T COG5059 486 -KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSST-KELS---LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLG 559 (568)
T ss_pred -hhccchhhcccchhhhhcccchhhhhcccchhhhh-HHHH---hhhhhccccccc-hhhhhHHHHHhhHhhhhccccch
Confidence 56778899999999999999999988776544332 1111 799999999999 99999999999999999999999
Q ss_pred HHHHHHH
Q 006540 367 DVIAALR 373 (641)
Q Consensus 367 ~VI~aL~ 373 (641)
++|.++.
T Consensus 560 d~~~~~~ 566 (568)
T COG5059 560 DVIHALG 566 (568)
T ss_pred hhhhhcc
Confidence 9998864
No 31
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=95.46 E-value=0.0088 Score=70.12 Aligned_cols=91 Identities=35% Similarity=0.633 Sum_probs=68.5
Q ss_pred ceEEEEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCCCc
Q 006540 140 SKKEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSS 219 (641)
Q Consensus 140 ~~~~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~~~ 219 (641)
....+.|+.+......+..-+....+.+..++++++.. +|++|++.+.....|++-+....++.........
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (670)
T KOG0239|consen 24 PKKRFELARVYSPSVGQPSLFSDVQPFVQSALEGLNVK--------AGLTYTMEGSNQPGGLLARLFKELIDLANSDKTS 95 (670)
T ss_pred cccccCccccccccccccccCCccccchhhhhhhhhcc--------hhhhhhhhhhcCcchhHHHhhhhcccccccCCCc
Confidence 34678888888777666666666667777788887776 8999999999888898888888777654433322
Q ss_pred eEEEEEeEEEEecceeeecCCCCCc
Q 006540 220 SVTFSMSMLEVYMGSVRDLLAPKPV 244 (641)
Q Consensus 220 ~~~v~vS~lEIYnE~V~DLL~~~~~ 244 (641)
. .++.|++.+.|++..-+.
T Consensus 96 ~------~~~~~~~~~~~~~~~~q~ 114 (670)
T KOG0239|consen 96 N------VVEAYNERLRDLLSELQS 114 (670)
T ss_pred h------hHHHHHHHHhhhcccccc
Confidence 2 678899999999976543
No 32
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=94.06 E-value=0.3 Score=53.20 Aligned_cols=18 Identities=50% Similarity=0.691 Sum_probs=15.3
Q ss_pred ceeEEecccCCCCcceee
Q 006540 175 NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM 192 (641)
...|+-||++|+|||+++
T Consensus 156 p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 345889999999999877
No 33
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=93.43 E-value=0.11 Score=58.77 Aligned_cols=91 Identities=24% Similarity=0.390 Sum_probs=57.8
Q ss_pred EEEEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceeecCC---CCCCCchh----HHHHHHHHHHh
Q 006540 142 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGT---SDQPGIVP----RALEELFRQAA 214 (641)
Q Consensus 142 ~~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~G~---~~~~GIIp----Ral~~LF~~~~ 214 (641)
..|....-|.|.-.|-. .|..||+.+-.|...-++ .|.|||||||||-.- -..|-||- -.+.+||....
T Consensus 3 ~~F~l~s~f~PaGDQP~---AI~~Lv~gi~~g~~~QtL-LGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 3 KPFKLHSPFKPAGDQPE---AIAELVEGIENGLKHQTL-LGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred CceEeccCCCCCCCcHH---HHHHHHHHHhcCceeeEE-eeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHH
Confidence 35777777888888854 356677777777654443 599999999999431 11122211 12345565443
Q ss_pred c-CCCceEEEEEeEEEEecceee
Q 006540 215 L-DNSSSVTFSMSMLEVYMGSVR 236 (641)
Q Consensus 215 ~-~~~~~~~v~vS~lEIYnE~V~ 236 (641)
. -+...+...|||+.-|.-.-|
T Consensus 79 ~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 79 EFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HhCcCcceEEEeeeccccCcccc
Confidence 2 346677889999999976543
No 34
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.40 E-value=0.028 Score=57.13 Aligned_cols=49 Identities=24% Similarity=0.435 Sum_probs=32.2
Q ss_pred EEEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 143 EFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 143 ~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
.|+||.-+.. ..++..|..+..+.+.--..+|. +|-||++|+||||-|.
T Consensus 4 ~~tFdnfv~g-~~N~~a~~~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 4 KYTFDNFVVG-ESNELAYAAAKAIAENPGERYNP-LFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp T-SCCCS--T-TTTHHHHHHHHHHHHSTTTSSSE-EEEEESTTSSHHHHHH
T ss_pred CCccccCCcC-CcHHHHHHHHHHHHhcCCCCCCc-eEEECCCCCCHHHHHH
Confidence 5899986643 44677777666665552223454 7889999999999874
No 35
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.23 E-value=0.067 Score=56.97 Aligned_cols=30 Identities=33% Similarity=0.548 Sum_probs=27.4
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
.+++..+++--++.|+.-|+||||||.||-
T Consensus 114 P~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 114 PPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 578888899999999999999999999983
No 36
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=91.67 E-value=0.26 Score=54.70 Aligned_cols=18 Identities=50% Similarity=0.678 Sum_probs=15.5
Q ss_pred ceeEEecccCCCCcceee
Q 006540 175 NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM 192 (641)
...|+-||++|+|||+..
T Consensus 179 pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456888999999999876
No 37
>PRK06893 DNA replication initiation factor; Validated
Probab=91.43 E-value=0.14 Score=52.26 Aligned_cols=47 Identities=11% Similarity=0.253 Sum_probs=32.1
Q ss_pred EEEEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 142 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 142 ~~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
..++||..+..... .- +..+.+.+-++++..++-||++|+||||.+.
T Consensus 11 ~~~~fd~f~~~~~~-~~----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 11 DDETLDNFYADNNL-LL----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred CcccccccccCChH-HH----HHHHHHHhhccCCCeEEEECCCCCCHHHHHH
Confidence 46789988865421 11 1222333345788889999999999999885
No 38
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.22 E-value=0.11 Score=58.65 Aligned_cols=32 Identities=31% Similarity=0.308 Sum_probs=28.3
Q ss_pred hHHHHHHhhcCcceeEEecccCCCCcceeecC
Q 006540 163 VEPILRSALDGHNVCVLAYGQTGTGKTFTMDG 194 (641)
Q Consensus 163 v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~G 194 (641)
-...+..++..-++.|+.-|+||||||.||+.
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 35677888999999999999999999999974
No 39
>PRK06620 hypothetical protein; Validated
Probab=90.93 E-value=0.086 Score=53.44 Aligned_cols=49 Identities=16% Similarity=0.298 Sum_probs=34.3
Q ss_pred EEEEeceeecCCCCchhhHhhhHHHHHHhhcCcc---eeEEecccCCCCcceeec
Q 006540 142 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHN---VCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 142 ~~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N---~~IfAYGqTGSGKTyTM~ 193 (641)
..|+||.-+...+. ...|..+..+.+. .|+| -.++-||++||||||.+.
T Consensus 11 ~~~tfd~Fvvg~~N-~~a~~~~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 11 SKYHPDEFIVSSSN-DQAYNIIKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCchhhEecccH-HHHHHHHHHHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 46889887655544 5577766555432 1444 358999999999999985
No 40
>PRK12377 putative replication protein; Provisional
Probab=90.74 E-value=0.14 Score=53.18 Aligned_cols=49 Identities=20% Similarity=0.277 Sum_probs=36.0
Q ss_pred EeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceeecC
Q 006540 145 GFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDG 194 (641)
Q Consensus 145 ~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~G 194 (641)
+||.-......|..++..+..+++.+..+. ..++-||++|+||||.+.+
T Consensus 72 tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 72 SFANYQVQNDGQRYALSQAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CcCCcccCChhHHHHHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 555544445567778877778888877654 4678899999999999853
No 41
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=90.63 E-value=1.8 Score=47.91 Aligned_cols=18 Identities=50% Similarity=0.691 Sum_probs=15.1
Q ss_pred ceeEEecccCCCCcceee
Q 006540 175 NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM 192 (641)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 445889999999999765
No 42
>PRK08084 DNA replication initiation factor; Provisional
Probab=90.55 E-value=0.15 Score=52.33 Aligned_cols=47 Identities=13% Similarity=0.412 Sum_probs=32.3
Q ss_pred EEEEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 142 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 142 ~~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
..|+||.-+.. .+...+..+..++. ......++-||++|+||||.+.
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~l~~~~~---~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAALQNALR---QEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CcCCccccccC--ccHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHH
Confidence 45788865544 55667766655543 2223478999999999999985
No 43
>PRK08116 hypothetical protein; Validated
Probab=89.81 E-value=0.16 Score=53.36 Aligned_cols=50 Identities=22% Similarity=0.384 Sum_probs=36.2
Q ss_pred EEEeceeecCCCCchhhHhhhHHHHHHhhc--CcceeEEecccCCCCcceeec
Q 006540 143 EFGFDKVFNQAASQEDVFVEVEPILRSALD--GHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 143 ~F~FD~VF~~~atQ~eVf~~v~plV~~vl~--G~N~~IfAYGqTGSGKTyTM~ 193 (641)
.++||.-. .+..+...|..+...++.+.. +.+..++-||++|+||||.+.
T Consensus 81 ~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 81 NSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred hcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 45676543 455566677777777777654 345669999999999999885
No 44
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=89.44 E-value=0.14 Score=59.52 Aligned_cols=50 Identities=20% Similarity=0.367 Sum_probs=35.6
Q ss_pred EEEEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 142 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 142 ~~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
..|+||..+-... +..+|..+..++...-.+||. ||-||.+|+||||.+.
T Consensus 283 ~~~TFDnFvvG~s-N~~A~aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL~ 332 (617)
T PRK14086 283 PKYTFDTFVIGAS-NRFAHAAAVAVAEAPAKAYNP-LFIYGESGLGKTHLLH 332 (617)
T ss_pred CCCCHhhhcCCCc-cHHHHHHHHHHHhCccccCCc-EEEECCCCCCHHHHHH
Confidence 5689988654433 445665556666554456776 8999999999999985
No 45
>PRK07952 DNA replication protein DnaC; Validated
Probab=89.27 E-value=0.21 Score=51.82 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=33.8
Q ss_pred EEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 144 FGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 144 F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
.+||.-......|..++..+...++.+..|+ ..++-||.+|+||||.+.
T Consensus 69 ~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~ 117 (244)
T PRK07952 69 CSFENYRVECEGQMNALSKARQYVEEFDGNI-ASFIFSGKPGTGKNHLAA 117 (244)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhhccCC-ceEEEECCCCCCHHHHHH
Confidence 3555433334456667777777777665543 368899999999999985
No 46
>PRK05642 DNA replication initiation factor; Validated
Probab=89.19 E-value=0.24 Score=50.83 Aligned_cols=49 Identities=16% Similarity=0.373 Sum_probs=29.8
Q ss_pred EEEEeceeecCCCCchhhHhhhHHHHHHhhcCc-ceeEEecccCCCCcceeec
Q 006540 142 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGH-NVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 142 ~~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~-N~~IfAYGqTGSGKTyTM~ 193 (641)
..|+||.-+... +...+..+..+.+.. .++ ...++-||++|+||||-+.
T Consensus 14 ~~~tfdnF~~~~--~~~a~~~~~~~~~~~-~~~~~~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 14 DDATFANYYPGA--NAAALGYVERLCEAD-AGWTESLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CcccccccCcCC--hHHHHHHHHHHhhcc-ccCCCCeEEEECCCCCCHHHHHH
Confidence 468888877332 334444443333221 122 3467899999999999874
No 47
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=89.00 E-value=0.51 Score=51.85 Aligned_cols=32 Identities=41% Similarity=0.659 Sum_probs=23.9
Q ss_pred hhhHHHHHHhhcCccee-EEecccCCCCcceee
Q 006540 161 VEVEPILRSALDGHNVC-VLAYGQTGTGKTFTM 192 (641)
Q Consensus 161 ~~v~plV~~vl~G~N~~-IfAYGqTGSGKTyTM 192 (641)
+.+..++..++.|.-.. ++.||.||+|||.|+
T Consensus 27 ~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 27 NQLASFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 34455566677665444 999999999999886
No 48
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=88.80 E-value=0.19 Score=56.44 Aligned_cols=49 Identities=16% Similarity=0.335 Sum_probs=34.5
Q ss_pred EEEEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 142 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 142 ~~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
..|+||.-+-. ..+...|..+..+... -..||. +|-||++|+||||.|.
T Consensus 100 ~~~tFdnFv~g-~~n~~a~~~~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 100 PDYTFENFVVG-PGNSFAYHAALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCCcccccccC-CchHHHHHHHHHHHhC-cCCCCe-EEEEcCCCCcHHHHHH
Confidence 57899986643 4456667665555543 123675 9999999999999984
No 49
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=88.15 E-value=0.33 Score=48.52 Aligned_cols=47 Identities=13% Similarity=0.417 Sum_probs=33.0
Q ss_pred EEEEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 142 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 142 ~~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
..|+||....+ .+..++..+..++. .+....|+-||++|+||||.+.
T Consensus 10 ~~~~~~~~~~~--~~~~~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 10 DDPTFDNFYAG--GNAELLAALRQLAA---GKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CchhhcCcCcC--CcHHHHHHHHHHHh---cCCCCeEEEECCCCCCHHHHHH
Confidence 45777776632 45566666655433 4567789999999999999873
No 50
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=88.00 E-value=0.25 Score=54.56 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=33.0
Q ss_pred EEEEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 142 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 142 ~~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
..|+||.-.. ...+...|..+..+...--..+| .++-||++|+||||.+.
T Consensus 105 ~~~tfd~fi~-g~~n~~a~~~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 105 PKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCccccccc-CCcHHHHHHHHHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 5788988432 34555567665555554212244 47889999999999884
No 51
>PRK06835 DNA replication protein DnaC; Validated
Probab=87.98 E-value=0.21 Score=54.12 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=26.6
Q ss_pred hhHhhhHHHHHHhhcCcceeEEecccCCCCcceeecC
Q 006540 158 DVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDG 194 (641)
Q Consensus 158 eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~G 194 (641)
.+++.+...++.+-.+. -.++-||++|+||||.+.+
T Consensus 167 ~~~~~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 167 KILEKCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHHHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 44544566777776554 5699999999999998853
No 52
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=87.90 E-value=0.25 Score=55.65 Aligned_cols=49 Identities=27% Similarity=0.454 Sum_probs=32.8
Q ss_pred EEEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 143 EFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 143 ~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
.|+||.-+... +++..|..+..++..--..|| .+|-||.+|+||||.|.
T Consensus 111 ~~tFdnFv~g~-~n~~A~~aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIAVQTVSKNPGISYN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred ccchhcccCCC-cHHHHHHHHHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence 58999866443 455667655555443111244 47899999999999984
No 53
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=87.88 E-value=0.36 Score=48.65 Aligned_cols=48 Identities=10% Similarity=0.293 Sum_probs=31.7
Q ss_pred EEEEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 142 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 142 ~~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
..|+||..+... .+.+...+..++.. .+....++-||++|+||||.+.
T Consensus 13 ~~~~~d~f~~~~--~~~~~~~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 13 PPPTFDNFVAGE--NAELVARLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred ChhhhcccccCC--cHHHHHHHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 468899887322 23444445554442 2345678999999999999873
No 54
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=87.48 E-value=0.35 Score=52.13 Aligned_cols=49 Identities=33% Similarity=0.463 Sum_probs=32.5
Q ss_pred EEeceeecCCCCchhhHhhhHHHHHHhhcC-cceeEEecccCCCCcceee
Q 006540 144 FGFDKVFNQAASQEDVFVEVEPILRSALDG-HNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 144 F~FD~VF~~~atQ~eVf~~v~plV~~vl~G-~N~~IfAYGqTGSGKTyTM 192 (641)
|.-|++.+.-...++-++.+...+..++.| ...+++.||++|+|||+++
T Consensus 8 l~~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 8 LEPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 334444444444555555565666666654 5568999999999999976
No 55
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=87.25 E-value=0.29 Score=54.90 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=33.7
Q ss_pred EEEEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 142 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 142 ~~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
..|+||.-.. ...+...|..+..+.+.--..|| .++-||++|+||||.+.
T Consensus 117 ~~~tfd~fv~-g~~n~~a~~~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 117 PKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CCCccccccc-CCCcHHHHHHHHHHHhCcCccCC-eEEEECCCCCCHHHHHH
Confidence 5788887432 23556667666655554323355 47889999999999984
No 56
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=86.61 E-value=0.3 Score=46.29 Aligned_cols=31 Identities=29% Similarity=0.290 Sum_probs=20.4
Q ss_pred HHHHHHhhcC-cceeEEecccCCCCcceeecC
Q 006540 164 EPILRSALDG-HNVCVLAYGQTGTGKTFTMDG 194 (641)
Q Consensus 164 ~plV~~vl~G-~N~~IfAYGqTGSGKTyTM~G 194 (641)
..+++.+-.+ ...-++..++||||||++|..
T Consensus 13 ~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 13 ARIINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 3344443333 355566677999999999963
No 57
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=86.49 E-value=2.5 Score=47.72 Aligned_cols=16 Identities=50% Similarity=0.806 Sum_probs=14.0
Q ss_pred eEEecccCCCCcceee
Q 006540 177 CVLAYGQTGTGKTFTM 192 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM 192 (641)
.++-||++|+|||.+.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999876
No 58
>PRK09087 hypothetical protein; Validated
Probab=86.40 E-value=0.34 Score=49.57 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=31.5
Q ss_pred EEEEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 142 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 142 ~~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
..|+||.-+...+. ..+|..+..+ ..-.+..++-||++||||||.+.
T Consensus 16 ~~~~~~~Fi~~~~N-~~a~~~l~~~----~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 16 PAYGRDDLLVTESN-RAAVSLVDHW----PNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCChhceeecCch-HHHHHHHHhc----ccCCCCeEEEECCCCCCHHHHHH
Confidence 46788887754444 4477644322 22235568999999999999985
No 59
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=86.12 E-value=0.47 Score=51.74 Aligned_cols=48 Identities=40% Similarity=0.487 Sum_probs=30.0
Q ss_pred EeceeecCCCCchhhHhhhHHHHHHhhcC-cceeEEecccCCCCcceee
Q 006540 145 GFDKVFNQAASQEDVFVEVEPILRSALDG-HNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 145 ~FD~VF~~~atQ~eVf~~v~plV~~vl~G-~N~~IfAYGqTGSGKTyTM 192 (641)
..|.+.+.-..-++-++.+...+..++.| ....++-||++|+|||+++
T Consensus 24 ~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 24 EPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 33333333333444455555556555543 4567899999999999976
No 60
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=85.37 E-value=0.52 Score=49.16 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=31.7
Q ss_pred cCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceeecC
Q 006540 151 NQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDG 194 (641)
Q Consensus 151 ~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~G 194 (641)
.....+..+|..+..+++.+-.|.| ++-||++|+||||-..+
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~n--l~l~G~~G~GKThLa~A 124 (254)
T COG1484 83 FQPGIDKKALEDLASLVEFFERGEN--LVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CCcchhHHHHHHHHHHHHHhccCCc--EEEECCCCCcHHHHHHH
Confidence 3445678888888888877775544 57799999999998853
No 61
>PRK06526 transposase; Provisional
Probab=84.92 E-value=0.32 Score=50.71 Aligned_cols=21 Identities=43% Similarity=0.552 Sum_probs=17.2
Q ss_pred cCcceeEEecccCCCCcceeecC
Q 006540 172 DGHNVCVLAYGQTGTGKTFTMDG 194 (641)
Q Consensus 172 ~G~N~~IfAYGqTGSGKTyTM~G 194 (641)
.+.| |+.||++|+||||.+.+
T Consensus 97 ~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 97 GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred cCce--EEEEeCCCCchHHHHHH
Confidence 3454 78999999999999864
No 62
>PRK08939 primosomal protein DnaI; Reviewed
Probab=84.50 E-value=0.41 Score=51.30 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=33.1
Q ss_pred EEeceeecCCCCchhhHhhhHHHHHHhhcC-cceeEEecccCCCCcceeecC
Q 006540 144 FGFDKVFNQAASQEDVFVEVEPILRSALDG-HNVCVLAYGQTGTGKTFTMDG 194 (641)
Q Consensus 144 F~FD~VF~~~atQ~eVf~~v~plV~~vl~G-~N~~IfAYGqTGSGKTyTM~G 194 (641)
.+||.+-..+..+..++..+...++....| ..-.++-||++|+||||.+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 455554333335556666556666665543 234689999999999999854
No 63
>PRK08727 hypothetical protein; Validated
Probab=83.82 E-value=0.64 Score=47.58 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=26.8
Q ss_pred EEEEeceeecCCCCchhhHhhhHHHHHHhhcCc-ceeEEecccCCCCcceeec
Q 006540 142 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGH-NVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 142 ~~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~-N~~IfAYGqTGSGKTyTM~ 193 (641)
..|+||.-+...+ + ....+..+ ..|+ .-.|+-||++|+||||.+.
T Consensus 14 ~~~~f~~f~~~~~-n--~~~~~~~~----~~~~~~~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 14 SDQRFDSYIAAPD-G--LLAQLQAL----AAGQSSDWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CcCChhhccCCcH-H--HHHHHHHH----HhccCCCeEEEECCCCCCHHHHHH
Confidence 3567877553333 2 22222222 2233 2459999999999999884
No 64
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=83.54 E-value=0.69 Score=41.22 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=18.0
Q ss_pred HHhhcCcceeEEecccCCCCcceee
Q 006540 168 RSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 168 ~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
..+.......++.+|++|+|||+.+
T Consensus 12 ~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 12 EALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHhCCCCCeEEEECCCCCCHHHHH
Confidence 3333334456888999999999876
No 65
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=82.69 E-value=0.43 Score=42.09 Aligned_cols=17 Identities=41% Similarity=0.407 Sum_probs=14.7
Q ss_pred EEecccCCCCcceeecC
Q 006540 178 VLAYGQTGTGKTFTMDG 194 (641)
Q Consensus 178 IfAYGqTGSGKTyTM~G 194 (641)
++.+|+||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57789999999999854
No 66
>PRK08181 transposase; Validated
Probab=82.49 E-value=0.65 Score=48.96 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=17.5
Q ss_pred cCcceeEEecccCCCCcceeecC
Q 006540 172 DGHNVCVLAYGQTGTGKTFTMDG 194 (641)
Q Consensus 172 ~G~N~~IfAYGqTGSGKTyTM~G 194 (641)
.|.| |+-||++|+||||.+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 4555 78999999999999864
No 67
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=82.15 E-value=0.68 Score=43.53 Aligned_cols=27 Identities=33% Similarity=0.532 Sum_probs=21.5
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 165 PILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 165 plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
.++..+..|.+ ++..|+||||||+...
T Consensus 6 ~~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 6 EAIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 45566677777 6788999999999975
No 68
>PF13245 AAA_19: Part of AAA domain
Probab=81.86 E-value=0.62 Score=39.62 Aligned_cols=26 Identities=38% Similarity=0.508 Sum_probs=17.9
Q ss_pred HHHhhcCcceeEEecccCCCCcceeec
Q 006540 167 LRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 167 V~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
|..++. -+..+...|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 444555 33334458999999999984
No 69
>PRK10436 hypothetical protein; Provisional
Probab=81.58 E-value=0.63 Score=52.72 Aligned_cols=29 Identities=38% Similarity=0.502 Sum_probs=24.5
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 165 PILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 165 plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
..+..++..-++.|+..|+||||||.||.
T Consensus 208 ~~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 208 AQFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 34666677788999999999999999995
No 70
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=80.88 E-value=0.7 Score=53.63 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=24.6
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 165 PILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 165 plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
..+..++..-++.|+..|+||||||.||.
T Consensus 306 ~~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 306 ALFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 35667777788999999999999999985
No 71
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=80.72 E-value=7.1 Score=44.95 Aligned_cols=16 Identities=50% Similarity=0.783 Sum_probs=13.8
Q ss_pred eEEecccCCCCcceee
Q 006540 177 CVLAYGQTGTGKTFTM 192 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM 192 (641)
.|+-||++|+|||++.
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4888999999999865
No 72
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=80.50 E-value=0.81 Score=52.18 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=24.3
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 165 PILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 165 plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
..+..++..-++.|+..|+||||||.||.
T Consensus 232 ~~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 232 SRFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 35566777778889999999999999995
No 73
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=80.45 E-value=2.7 Score=43.62 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=35.4
Q ss_pred EcCChHHHHHHHHHhhhhccccccCCCCCCCCceEEEEEEEEEecCCCCCceEEeEeEEEecCCCccc
Q 006540 275 QIPDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCLMRITIFRHGDALEAKTEVSKLWMVDLGGSERV 342 (641)
Q Consensus 275 ~V~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~lVDLAGSEr~ 342 (641)
.+.+++++..++..+... ..+. ...-|.-++.|.|...+. -.|+||||+|-.+.
T Consensus 85 ~~~~~~~v~~~i~~~~~~-~~~~-----~~~~s~~~i~l~i~~p~~--------~~ltLIDlPGl~~~ 138 (240)
T smart00053 85 KFTDFDEVRNEIEAETDR-VTGT-----NKGISPVPINLRVYSPHV--------LNLTLIDLPGITKV 138 (240)
T ss_pred ccCCHHHHHHHHHHHHHH-hcCC-----CCcccCcceEEEEeCCCC--------CceEEEeCCCcccc
Confidence 346788888888876543 1111 123456688888877653 36999999999643
No 74
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=79.88 E-value=0.81 Score=48.52 Aligned_cols=42 Identities=19% Similarity=0.342 Sum_probs=26.5
Q ss_pred EeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 145 GFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 145 ~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
.||.+.+ |+++.+.+..++. .|....++-||++|+|||+++.
T Consensus 13 ~~~~~~g----~~~~~~~L~~~~~---~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 13 LLEDILG----QDEVVERLSRAVD---SPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred cHHHhcC----CHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHH
Confidence 4565553 4555544443333 3443357889999999999873
No 75
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=79.72 E-value=1.1 Score=47.24 Aligned_cols=34 Identities=32% Similarity=0.464 Sum_probs=28.5
Q ss_pred hHhhh--HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 159 VFVEV--EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 159 Vf~~v--~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
-|+++ .++++.+.--..+.|+..|.|||||+.||
T Consensus 109 t~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtm 144 (375)
T COG5008 109 TFEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTM 144 (375)
T ss_pred cHHhcCCcHHHHHhhcccCceEEEECCCCCCchhhH
Confidence 35554 67888888788889999999999999998
No 76
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=79.68 E-value=0.53 Score=42.53 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=13.2
Q ss_pred ceeEEecccCCCCcceee
Q 006540 175 NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM 192 (641)
..+++.+|++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999987
No 77
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=79.19 E-value=0.57 Score=44.77 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=17.5
Q ss_pred hhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 161 VEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 161 ~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
+.+..+++....|...+++.+|..|+|||+.+
T Consensus 10 ~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 10 ERLRDLLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp HHHHHTTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 33444444334667788999999999999976
No 78
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=79.13 E-value=0.66 Score=46.77 Aligned_cols=15 Identities=40% Similarity=0.793 Sum_probs=13.0
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
+..+|.||||||+|+
T Consensus 26 ~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTV 40 (229)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999998
No 79
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=78.99 E-value=0.69 Score=40.65 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=15.5
Q ss_pred eeEEecccCCCCcceeec
Q 006540 176 VCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM~ 193 (641)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 467889999999999884
No 80
>PRK06921 hypothetical protein; Provisional
Probab=78.87 E-value=1.2 Score=46.71 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=24.0
Q ss_pred hHhhhHHHHHHhhc---CcceeEEecccCCCCcceeec
Q 006540 159 VFVEVEPILRSALD---GHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 159 Vf~~v~plV~~vl~---G~N~~IfAYGqTGSGKTyTM~ 193 (641)
++..+...++.+-+ +..-.++-||++|+||||.+.
T Consensus 98 ~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~ 135 (266)
T PRK06921 98 AYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLT 135 (266)
T ss_pred HHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHH
Confidence 44444556665532 234568899999999999985
No 81
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=78.83 E-value=0.96 Score=49.08 Aligned_cols=29 Identities=34% Similarity=0.572 Sum_probs=21.9
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 165 PILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 165 plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
+.+..++.--...|+..|+||||||.||.
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 44555554445778999999999999994
No 82
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=78.75 E-value=1.3 Score=53.71 Aligned_cols=33 Identities=39% Similarity=0.527 Sum_probs=24.5
Q ss_pred HhhhHHHHHHhhc--CcceeEEecccCCCCcceee
Q 006540 160 FVEVEPILRSALD--GHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 160 f~~v~plV~~vl~--G~N~~IfAYGqTGSGKTyTM 192 (641)
++.+..++..++. |-+.++|.||++|+|||.|+
T Consensus 764 IeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 764 IKEVHGFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 4445566666665 34567889999999999998
No 83
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=78.38 E-value=0.8 Score=45.05 Aligned_cols=30 Identities=30% Similarity=0.478 Sum_probs=22.0
Q ss_pred hHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 163 VEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 163 v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
+..+...+-.|.+.+++.||+.|+|||+.|
T Consensus 8 l~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 8 LEKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 445555455667889999999999999977
No 84
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=78.17 E-value=1.3 Score=50.01 Aligned_cols=51 Identities=18% Similarity=0.302 Sum_probs=34.4
Q ss_pred eEEEEeceeecCCCCchhhHhhhHHHHHHh--hcC--cceeEEecccCCCCcceeec
Q 006540 141 KKEFGFDKVFNQAASQEDVFVEVEPILRSA--LDG--HNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 141 ~~~F~FD~VF~~~atQ~eVf~~v~plV~~v--l~G--~N~~IfAYGqTGSGKTyTM~ 193 (641)
...|+||.-... .++...|..+..+.+.. ..| ||. +|-||++|+||||.+.
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHRILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQ 159 (445)
T ss_pred CccccccceeeC-CcHHHHHHHHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHH
Confidence 367999986643 35556666666655443 223 453 6789999999999984
No 85
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=77.97 E-value=0.78 Score=45.69 Aligned_cols=18 Identities=44% Similarity=0.591 Sum_probs=16.0
Q ss_pred eeEEecccCCCCcceeec
Q 006540 176 VCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM~ 193 (641)
+.|+-.|+||||||.++.
T Consensus 2 GlilI~GptGSGKTTll~ 19 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 578889999999999984
No 86
>PF12846 AAA_10: AAA-like domain
Probab=77.34 E-value=0.8 Score=47.05 Aligned_cols=19 Identities=42% Similarity=0.609 Sum_probs=16.0
Q ss_pred ceeEEecccCCCCcceeec
Q 006540 175 NVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM~ 193 (641)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567889999999999884
No 87
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=76.92 E-value=1.2 Score=49.02 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=20.2
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 165 PILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 165 plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
++++.++. .++.|+..|+||||||.||.
T Consensus 140 ~~~~~l~~-~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 140 DLFNSLLP-AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred HHHHHHHh-cCCEEEEECCCCCCHHHHHH
Confidence 34444443 45678889999999999983
No 88
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=76.34 E-value=1.3 Score=48.63 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=18.9
Q ss_pred hcCcceeEEecccCCCCcceeec
Q 006540 171 LDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 171 l~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
+.--...|+..|+||||||.||.
T Consensus 130 ~~~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 130 IAPQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred HhccCCEEEEECCCCCCHHHHHH
Confidence 33346889999999999999984
No 89
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=76.09 E-value=1.4 Score=46.27 Aligned_cols=30 Identities=37% Similarity=0.473 Sum_probs=22.9
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
...+..++..-.+.|+-.|+||||||.||.
T Consensus 69 ~~~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 69 LEIFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 345566666556678888999999999984
No 90
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=75.53 E-value=1.4 Score=43.96 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=21.0
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceee
Q 006540 165 PILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 165 plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
..|..++...+-.++..|+.||||||+|
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 4556666655555666899999999998
No 91
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=75.43 E-value=1.7 Score=42.81 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=15.8
Q ss_pred ceeEEecccCCCCcceeecC
Q 006540 175 NVCVLAYGQTGTGKTFTMDG 194 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM~G 194 (641)
.-.++-+|++|+||||...+
T Consensus 47 ~~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp --EEEEEESTTSSHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHH
Confidence 34588999999999998853
No 92
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=75.40 E-value=1.5 Score=48.98 Aligned_cols=50 Identities=20% Similarity=0.373 Sum_probs=30.6
Q ss_pred EEEEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 142 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 142 ~~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
..|+||.-... .++.-.|..+..+-+ .-.+.---||-||++|+||||-|.
T Consensus 82 ~~ytFdnFv~g-~~N~~A~aa~~~va~-~~g~~~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 82 PKYTFDNFVVG-PSNRLAYAAAKAVAE-NPGGAYNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCchhheeeC-CchHHHHHHHHHHHh-ccCCcCCcEEEECCCCCCHHHHHH
Confidence 57999985543 344444543322222 222223347889999999999994
No 93
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=74.61 E-value=1.8 Score=46.81 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=20.5
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
..++..++.+. ..|+..|.||||||++|
T Consensus 138 ~~~L~~~v~~~-~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 138 REAIIAAVRAH-RNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 45666666654 45666699999999877
No 94
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=74.40 E-value=1.2 Score=46.17 Aligned_cols=71 Identities=30% Similarity=0.363 Sum_probs=37.0
Q ss_pred CCEEEEEEeCCCCcccCCcccCcEEecCCEEEEEeCCceEEEEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecc
Q 006540 103 GCIRVFCRVRSFLVTGRRVIHEPVLTELEKVVVRSGGSKKEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYG 182 (641)
Q Consensus 103 G~IrV~~RvRP~~~~e~~~~~~~v~~~~~~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYG 182 (641)
+++||.|-.-|.... ..+.++.. ....|+++..... ..+-+.+..++..++.+. +.|+..|
T Consensus 74 ~~~R~~i~~~p~~~~-------------~~~~iR~~-~~~~~sle~l~~~----~~~~~~~~~~l~~~v~~~-~~ili~G 134 (270)
T PF00437_consen 74 DGIRVRITTPPVSGG-------------PTIVIRKF-SSKPFSLEDLGES----GSIPEEIAEFLRSAVRGR-GNILISG 134 (270)
T ss_dssp TSEEEEEEETTTSTS-------------EEEEEEEE-TSS--CHCCCCHT----HHCHHHHHHHHHHCHHTT-EEEEEEE
T ss_pred CCeEEEEEEcCCcCC-------------cccceecc-ccccccHhhccCc----hhhHHHHHHHHhhccccc-eEEEEEC
Confidence 777777776665432 12444411 1234555443211 111123445555555444 4455569
Q ss_pred cCCCCcceee
Q 006540 183 QTGTGKTFTM 192 (641)
Q Consensus 183 qTGSGKTyTM 192 (641)
.||||||.+|
T Consensus 135 ~tGSGKTT~l 144 (270)
T PF00437_consen 135 PTGSGKTTLL 144 (270)
T ss_dssp STTSSHHHHH
T ss_pred CCccccchHH
Confidence 9999999998
No 95
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=73.92 E-value=1.9 Score=45.36 Aligned_cols=42 Identities=26% Similarity=0.260 Sum_probs=27.6
Q ss_pred cCCCCchhhHhhhHHHHHHhhcC--cceeEEecccCCCCcceee
Q 006540 151 NQAASQEDVFVEVEPILRSALDG--HNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 151 ~~~atQ~eVf~~v~plV~~vl~G--~N~~IfAYGqTGSGKTyTM 192 (641)
+.-..|+++.+.+..++.....+ ....++-||++|+|||+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLA 47 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 33445677777666666554332 2223677999999999876
No 96
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=73.63 E-value=1.8 Score=46.19 Aligned_cols=30 Identities=33% Similarity=0.449 Sum_probs=22.0
Q ss_pred hHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 163 VEPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 163 v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
...++..++.+ ...|+..|+||||||.+|.
T Consensus 121 ~~~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 121 QRDVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 34556666664 4567788999999999883
No 97
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=73.49 E-value=1.9 Score=46.83 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=21.7
Q ss_pred hHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 163 VEPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 163 v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
+..++..++.+. ..|+..|+||||||.+|.
T Consensus 149 ~~~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 149 IKEFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 456666666543 346777999999999883
No 98
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=73.44 E-value=2 Score=44.01 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=17.9
Q ss_pred HhhcCcceeEEecccCCCCcceee
Q 006540 169 SALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 169 ~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
..+......++-+|++|+|||+++
T Consensus 37 ~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 37 YGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHH
Confidence 334444557888999999999876
No 99
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=72.33 E-value=1.8 Score=42.46 Aligned_cols=28 Identities=39% Similarity=0.539 Sum_probs=17.9
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 165 PILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 165 plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
..|..++..-. ..+..|+.|||||+|+.
T Consensus 8 ~Ai~~~~~~~~-~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 8 EAIQSALSSNG-ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp HHHHHHCTSSE--EEEE-STTSSHHHHHH
T ss_pred HHHHHHHcCCC-CEEEECCCCCChHHHHH
Confidence 34555554433 45668999999998874
No 100
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=72.31 E-value=4.1 Score=49.20 Aligned_cols=53 Identities=26% Similarity=0.335 Sum_probs=33.6
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHH-hcCCCceEEEEEeEE
Q 006540 165 PILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQA-ALDNSSSVTFSMSML 228 (641)
Q Consensus 165 plV~~vl~G~N~~IfAYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~-~~~~~~~~~v~vS~l 228 (641)
..+..+.+|.|+.|.| |||||||-+-| +| ++..|+..- ....+.-+.+++|=+
T Consensus 29 ~a~~~i~~G~nvLiiA--PTGsGKTeAAf--------Lp-il~~l~~~~~~~~~~~i~~lYIsPL 82 (814)
T COG1201 29 YAIPEIHSGENVLIIA--PTGSGKTEAAF--------LP-VINELLSLGKGKLEDGIYALYISPL 82 (814)
T ss_pred HHHHHHhCCCceEEEc--CCCCChHHHHH--------HH-HHHHHHhccCCCCCCceEEEEeCcH
Confidence 4567778999999988 99999998753 33 555555542 111133445555443
No 101
>PF13479 AAA_24: AAA domain
Probab=71.55 E-value=1.6 Score=44.08 Aligned_cols=20 Identities=35% Similarity=0.605 Sum_probs=16.8
Q ss_pred ceeEEecccCCCCcceeecC
Q 006540 175 NVCVLAYGQTGTGKTFTMDG 194 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM~G 194 (641)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45789999999999998743
No 102
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=71.07 E-value=1.3 Score=44.27 Aligned_cols=17 Identities=41% Similarity=0.587 Sum_probs=14.7
Q ss_pred eEEecccCCCCcceeec
Q 006540 177 CVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM~ 193 (641)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 47788999999999983
No 103
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=70.41 E-value=1.7 Score=40.96 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=18.7
Q ss_pred EEecccCCCCcceeecCCCCCCCchhHHHHHHHHH
Q 006540 178 VLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQ 212 (641)
Q Consensus 178 IfAYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~ 212 (641)
+--.|+||+||||+- ..+++.||..
T Consensus 56 lSfHG~tGtGKn~v~----------~liA~~ly~~ 80 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVS----------RLIAEHLYKS 80 (127)
T ss_pred EEeecCCCCcHHHHH----------HHHHHHHHhc
Confidence 445799999999975 3566777864
No 104
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=70.13 E-value=1.6 Score=39.11 Aligned_cols=15 Identities=47% Similarity=0.609 Sum_probs=13.3
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999876
No 105
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=69.80 E-value=1.8 Score=38.63 Aligned_cols=16 Identities=25% Similarity=0.519 Sum_probs=14.1
Q ss_pred eEEecccCCCCcceee
Q 006540 177 CVLAYGQTGTGKTFTM 192 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM 192 (641)
+|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5788999999999875
No 106
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=69.76 E-value=2.5 Score=45.82 Aligned_cols=30 Identities=33% Similarity=0.571 Sum_probs=21.3
Q ss_pred hHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 163 VEPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 163 v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
...++..++.+. ..|+..|.||||||.+|.
T Consensus 133 ~~~~L~~~v~~~-~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 133 QASVIRSAIDSR-LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 345555665543 347788999999999983
No 107
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=69.13 E-value=2.5 Score=46.07 Aligned_cols=29 Identities=34% Similarity=0.482 Sum_probs=23.0
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
..++..++.+. +.|+..|.||||||.++.
T Consensus 163 a~~L~~av~~r-~NILisGGTGSGKTTlLN 191 (355)
T COG4962 163 AKFLRRAVGIR-CNILISGGTGSGKTTLLN 191 (355)
T ss_pred HHHHHHHHhhc-eeEEEeCCCCCCHHHHHH
Confidence 45666666666 778999999999999873
No 108
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=68.87 E-value=2.9 Score=41.11 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=20.5
Q ss_pred hHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 163 VEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 163 v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
+.+++..++.. ...+.-.|+||||||.+|
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 45566666654 234666799999999987
No 109
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=68.57 E-value=7.7 Score=38.63 Aligned_cols=55 Identities=27% Similarity=0.398 Sum_probs=41.1
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhhhhcCCCCE
Q 006540 51 ICTDVNVVPEQQKNELEQSIINLEGEIVELRLKKRRL-----DEKRREALNKILDIKGCI 105 (641)
Q Consensus 51 ~~~~~~~~~e~~~~el~~~i~~l~~e~~~l~~~~~~~-----e~~Rr~lhn~i~elkG~I 105 (641)
.......+-+.++.+|..++..+++||..|+.-|... |.+||-=++.+.||+-||
T Consensus 34 s~s~~~~LSe~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLGlt~~~EL~qni 93 (208)
T KOG4010|consen 34 SASEFEALSEEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLGLTVLKELKQNI 93 (208)
T ss_pred hhhHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 3345566778899999999999999999999877443 345555566777777665
No 110
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=68.05 E-value=2.7 Score=45.85 Aligned_cols=30 Identities=33% Similarity=0.551 Sum_probs=21.3
Q ss_pred hHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 163 VEPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 163 v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
+..++..++.+ ...|+..|+||||||.+|.
T Consensus 151 ~~~~l~~~v~~-~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 151 LEAFLHACVVG-RLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHHHHc-CCeEEEECCCCccHHHHHH
Confidence 45566666543 3346778999999999984
No 111
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=67.82 E-value=3.1 Score=39.05 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=19.4
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeecC
Q 006540 165 PILRSALDGHNVCVLAYGQTGTGKTFTMDG 194 (641)
Q Consensus 165 plV~~vl~G~N~~IfAYGqTGSGKTyTM~G 194 (641)
.++..++++. ..++..|+||||||.++..
T Consensus 15 ~~~~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 15 EAIEALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 3445555553 3446678999999998743
No 112
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=67.65 E-value=3 Score=48.01 Aligned_cols=32 Identities=34% Similarity=0.476 Sum_probs=25.6
Q ss_pred hhhHHHHHHhhcCcc--eeEEecccCCCCcceee
Q 006540 161 VEVEPILRSALDGHN--VCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 161 ~~v~plV~~vl~G~N--~~IfAYGqTGSGKTyTM 192 (641)
++|+..++..+.|.. ..++.+||+|+|||.|+
T Consensus 29 ~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 29 EEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 356788888776654 46788999999999998
No 113
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=67.19 E-value=3.8 Score=45.51 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=16.2
Q ss_pred ceeEEecccCCCCcceee
Q 006540 175 NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM 192 (641)
...|+.+|+||+|||.|+
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457889999999999998
No 114
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=67.14 E-value=4 Score=43.10 Aligned_cols=17 Identities=41% Similarity=0.593 Sum_probs=14.1
Q ss_pred eEEecccCCCCcceeec
Q 006540 177 CVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM~ 193 (641)
.|+-.|+||+|||+|+.
T Consensus 196 vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLA 212 (282)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45566999999999984
No 115
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=66.70 E-value=2.9 Score=45.72 Aligned_cols=37 Identities=30% Similarity=0.505 Sum_probs=26.7
Q ss_pred CCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 153 AASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 153 ~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
+..|..+|+.|-..+.. .+| ..+|.-|+-|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~-~~~--~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN-EEG--LNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc-cCC--cEEEEEcCCCCChhHHH
Confidence 34688999887333333 344 46688999999999987
No 116
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=66.60 E-value=6 Score=40.91 Aligned_cols=43 Identities=28% Similarity=0.375 Sum_probs=30.1
Q ss_pred ecCCCCchhhHhhhHHHHHHhhc-C-cceeEEecccCCCCcceee
Q 006540 150 FNQAASQEDVFVEVEPILRSALD-G-HNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 150 F~~~atQ~eVf~~v~plV~~vl~-G-~N~~IfAYGqTGSGKTyTM 192 (641)
|++...|+.+-...+.+++.+.. | .=..++-||+.|.|||...
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHH
Confidence 45566789999888888888864 2 3345788999999998643
No 117
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=65.27 E-value=3.8 Score=40.05 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=20.3
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
...++.++.|.| ++..++||+|||.+.
T Consensus 27 ~~~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 27 ARAIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 345566667887 577789999999873
No 118
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=64.92 E-value=4 Score=41.40 Aligned_cols=25 Identities=44% Similarity=0.610 Sum_probs=16.7
Q ss_pred HHHHhhcCcceeEEecccCCCCcceee
Q 006540 166 ILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 166 lV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
.++.++ .+-.+++.|+.||||||.-
T Consensus 12 ~~~al~--~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 12 ALDALL--NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp HHHHHH--H-SEEEEE--TTSSTTHHH
T ss_pred HHHHHH--hCCeEEEECCCCCcHHHHH
Confidence 344444 5668999999999999876
No 119
>PRK04195 replication factor C large subunit; Provisional
Probab=64.68 E-value=4.3 Score=46.13 Aligned_cols=37 Identities=30% Similarity=0.428 Sum_probs=26.4
Q ss_pred chhhHhhhHHHHHHhhcCc-ceeEEecccCCCCcceee
Q 006540 156 QEDVFVEVEPILRSALDGH-NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 156 Q~eVf~~v~plV~~vl~G~-N~~IfAYGqTGSGKTyTM 192 (641)
|+++-..+..++.....|. .-.++-||++|+|||++.
T Consensus 19 ~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 19 NEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 3444444566666666665 557888999999999887
No 120
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=64.56 E-value=2.4 Score=43.82 Aligned_cols=20 Identities=30% Similarity=0.306 Sum_probs=15.5
Q ss_pred cceeEEecccCCCCcceeec
Q 006540 174 HNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 174 ~N~~IfAYGqTGSGKTyTM~ 193 (641)
.+..++..|..|||||+||.
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHH
Confidence 66777888899999999994
No 121
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=64.12 E-value=3.9 Score=45.89 Aligned_cols=27 Identities=37% Similarity=0.571 Sum_probs=21.2
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
...+..+++|.| +++.+|||||||.+.
T Consensus 32 ~~ai~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 32 AQSLPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 456677889988 567779999999763
No 122
>PRK13342 recombination factor protein RarA; Reviewed
Probab=64.09 E-value=3.4 Score=45.90 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=24.1
Q ss_pred CchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 155 SQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 155 tQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
.|+.+...-..+...+-.+.-..++-||++|+|||+..
T Consensus 16 Gq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 16 GQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred CcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHH
Confidence 45555544233333334555556777999999999876
No 123
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=63.84 E-value=2.2 Score=42.28 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=13.2
Q ss_pred eEEecccCCCCcceeec
Q 006540 177 CVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM~ 193 (641)
-++.+|+||||||.+|.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 67899999999999884
No 124
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=63.72 E-value=30 Score=43.57 Aligned_cols=27 Identities=37% Similarity=0.634 Sum_probs=22.2
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
..+|..++.|.++.+.+ +||+|||.+-
T Consensus 466 ~eaI~aiL~GrDVLVim--PTGSGKSLcY 492 (1195)
T PLN03137 466 REIINATMSGYDVFVLM--PTGGGKSLTY 492 (1195)
T ss_pred HHHHHHHHcCCCEEEEc--CCCccHHHHH
Confidence 57888999999975555 9999999873
No 125
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=63.71 E-value=3.6 Score=44.08 Aligned_cols=40 Identities=30% Similarity=0.329 Sum_probs=25.9
Q ss_pred CCchhhHhhhHHHHHHhhc--CcceeEEecccCCCCcceeec
Q 006540 154 ASQEDVFVEVEPILRSALD--GHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 154 atQ~eVf~~v~plV~~vl~--G~N~~IfAYGqTGSGKTyTM~ 193 (641)
..|+++-+.+..++..+.. +....++-||++|+|||+...
T Consensus 28 vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 28 IGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 4555555555555555432 222357789999999999874
No 126
>PTZ00424 helicase 45; Provisional
Probab=63.66 E-value=3.8 Score=44.68 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=21.7
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
...+..+++|.|+. ..++||||||.+.
T Consensus 56 ~~ai~~i~~~~d~i--i~apTGsGKT~~~ 82 (401)
T PTZ00424 56 QRGIKPILDGYDTI--GQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHHhCCCCEE--EECCCCChHHHHH
Confidence 46677888999864 5689999999765
No 127
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=63.50 E-value=4.7 Score=43.43 Aligned_cols=41 Identities=37% Similarity=0.287 Sum_probs=25.1
Q ss_pred CCCCchhhHhh-hHHHHHHhhcC-cceeEEecccCCCCcceee
Q 006540 152 QAASQEDVFVE-VEPILRSALDG-HNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 152 ~~atQ~eVf~~-v~plV~~vl~G-~N~~IfAYGqTGSGKTyTM 192 (641)
|.+.-+.++++ |-.++...+.+ .---.+-||+.|+|||.|.
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 33333444544 34444444444 3344678999999999997
No 128
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=63.35 E-value=6.2 Score=46.79 Aligned_cols=88 Identities=24% Similarity=0.391 Sum_probs=52.7
Q ss_pred EEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceeecCCC---CCCCchh----HHHHHHHHHHhcC
Q 006540 144 FGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTS---DQPGIVP----RALEELFRQAALD 216 (641)
Q Consensus 144 F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~G~~---~~~GIIp----Ral~~LF~~~~~~ 216 (641)
|....=|.|.-.|..-|.. +++.+-+|...- ..+|.|||||||||-.-- ..|-||- ..+.+|+..+..-
T Consensus 2 f~~~~~~~~~~~Q~~ai~~---l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f 77 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK---LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEF 77 (655)
T ss_pred ceeccCCCCChHHHHHHHH---HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHh
Confidence 4444557788888776654 445555663222 378999999999995421 1222221 1334455544322
Q ss_pred -CCceEEEEEeEEEEeccee
Q 006540 217 -NSSSVTFSMSMLEVYMGSV 235 (641)
Q Consensus 217 -~~~~~~v~vS~lEIYnE~V 235 (641)
+...+.+.|||+.-|.-..
T Consensus 78 ~p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 78 FPENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred CCCCeEEEEeeecccCCccc
Confidence 3444778899999997654
No 129
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=62.86 E-value=2.9 Score=38.39 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=13.3
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
|+..|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999864
No 130
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=62.13 E-value=3.8 Score=43.28 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=17.4
Q ss_pred hcCc-ceeEEecccCCCCcceeec
Q 006540 171 LDGH-NVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 171 l~G~-N~~IfAYGqTGSGKTyTM~ 193 (641)
-.|. ...++-||++|+|||+.+.
T Consensus 38 ~~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 38 KKGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred hcCCCCeEEEeeCcCCCCHHHHHH
Confidence 3554 4566679999999999873
No 131
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=61.85 E-value=4.8 Score=43.01 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=21.8
Q ss_pred hHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 163 VEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 163 v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
+.+++..++.+. ..|+-.|+||||||..|
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 566777777655 35566699999999977
No 132
>PRK09183 transposase/IS protein; Provisional
Probab=61.66 E-value=4.2 Score=42.48 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=16.0
Q ss_pred cCcceeEEecccCCCCcceeec
Q 006540 172 DGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 172 ~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
.|.| ++-+|++|+||||.+.
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAI 120 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHH
Confidence 4555 5578999999999884
No 133
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=61.09 E-value=2.5 Score=37.76 Aligned_cols=26 Identities=23% Similarity=0.520 Sum_probs=20.3
Q ss_pred EEecccCCCCcceeecCCCCCCCchhHHHHHHHHHH
Q 006540 178 VLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQA 213 (641)
Q Consensus 178 IfAYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~ 213 (641)
|+-||++|.|||+.+. ..+.+|.+.+
T Consensus 1 I~i~G~~G~GKS~l~~----------~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK----------ELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHH----------HHHHHHHHHh
Confidence 5789999999999873 4666666655
No 134
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=61.04 E-value=4.5 Score=44.87 Aligned_cols=27 Identities=44% Similarity=0.637 Sum_probs=21.9
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
...|..+++|.| +++.++||||||.+.
T Consensus 29 ~~ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 29 AEAIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 456777888987 788899999999863
No 135
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=60.25 E-value=4.8 Score=44.61 Aligned_cols=27 Identities=41% Similarity=0.538 Sum_probs=20.9
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
...+..++.|.|+ ++-++||||||.+.
T Consensus 36 ~~aip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 36 ALALPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHHHhCCCcE--EEECCCCchHHHHH
Confidence 4566778899885 55669999999864
No 136
>PRK06547 hypothetical protein; Provisional
Probab=60.17 E-value=6.7 Score=38.46 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=19.8
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceee
Q 006540 165 PILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 165 plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
.++..+..+.-.-|..+|.+|||||+.-
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 3445555555556677799999999865
No 137
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=60.12 E-value=8.9 Score=40.10 Aligned_cols=110 Identities=21% Similarity=0.224 Sum_probs=58.9
Q ss_pred HHHhhcCccee-EEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCCcc
Q 006540 167 LRSALDGHNVC-VLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPVF 245 (641)
Q Consensus 167 V~~vl~G~N~~-IfAYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~V~DLL~~~~~~ 245 (641)
...++.|..+- ++-||..|+|||.++- + ++......+ +-.+||..+.+.||-.--..
T Consensus 43 t~~Fl~G~pannvLL~G~rGtGKSSlVk-----------a---ll~~y~~~G-------LRlIev~k~~L~~l~~l~~~- 100 (249)
T PF05673_consen 43 TEQFLQGLPANNVLLWGARGTGKSSLVK-----------A---LLNEYADQG-------LRLIEVSKEDLGDLPELLDL- 100 (249)
T ss_pred HHHHHcCCCCcceEEecCCCCCHHHHHH-----------H---HHHHHhhcC-------ceEEEECHHHhccHHHHHHH-
Confidence 45677776443 6669999999998762 2 333322222 66899998887776421000
Q ss_pred chhhhhcccceeeEeCCCCCeEecCcEEEEc-CChHHHHHHHHHhhhhccccccCCCCCCCCceEE
Q 006540 246 KAYEAATRCNLNIQTDAKGTVEIEGLTEVQI-PDFTKARWWYNKGRRVRSTSWTNVNEASSRSHCL 310 (641)
Q Consensus 246 ~~~~~~~~~~L~i~ed~~g~v~V~glt~v~V-~s~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~I 310 (641)
+ ... ...--+++.+|+--.- .++..+..+|+-|...| ....-+...|.|-|.|
T Consensus 101 --l---~~~------~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 101 --L---RDR------PYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYATSNRRHLV 154 (249)
T ss_pred --H---hcC------CCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEecchhhcc
Confidence 0 000 0111234555552221 23455666666665443 3334455666666655
No 138
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=59.43 E-value=3.6 Score=36.62 Aligned_cols=15 Identities=33% Similarity=0.394 Sum_probs=13.2
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677899999999876
No 139
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=59.02 E-value=5.4 Score=47.40 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=28.1
Q ss_pred chhhHhhhHHHHHHh-hcCcceeEEecccCCCCcceee
Q 006540 156 QEDVFVEVEPILRSA-LDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 156 Q~eVf~~v~plV~~v-l~G~N~~IfAYGqTGSGKTyTM 192 (641)
.-.||.........+ -.|.|-||+..|.+|||||.++
T Consensus 65 ~PHif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 65 PPHIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp -SSHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred cCccchhhhcccccccccccccceeeccccccccccch
Confidence 356777664444444 3689999999999999999986
No 140
>PLN03025 replication factor C subunit; Provisional
Probab=58.77 E-value=4.9 Score=42.98 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=14.5
Q ss_pred eEEecccCCCCcceeec
Q 006540 177 CVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM~ 193 (641)
.++-||+.|+|||++..
T Consensus 36 ~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 36 NLILSGPPGTGKTTSIL 52 (319)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 45669999999999985
No 141
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=58.76 E-value=5.8 Score=47.04 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=20.8
Q ss_pred hHHHHHHhhc-----CcceeEEecccCCCCcceeec
Q 006540 163 VEPILRSALD-----GHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 163 v~plV~~vl~-----G~N~~IfAYGqTGSGKTyTM~ 193 (641)
|..+++.+.. |.+..++. -+||||||+||.
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~-~~TGsGKT~t~~ 281 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIW-HTQGSGKTLTML 281 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEE-EecCCCccHHHH
Confidence 4566666665 34455544 399999999995
No 142
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=58.51 E-value=3.1 Score=38.32 Aligned_cols=15 Identities=53% Similarity=0.640 Sum_probs=13.5
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999876
No 143
>PRK13764 ATPase; Provisional
Probab=58.45 E-value=4.5 Score=47.39 Aligned_cols=19 Identities=26% Similarity=0.365 Sum_probs=16.1
Q ss_pred ceeEEecccCCCCcceeec
Q 006540 175 NVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM~ 193 (641)
...|+..|+||||||+++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3448999999999999984
No 144
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=58.29 E-value=52 Score=28.00 Aligned_cols=53 Identities=21% Similarity=0.289 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Q 006540 441 KRREIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLEDEE 493 (641)
Q Consensus 441 ~~~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~~~~~l~~e~ 493 (641)
..++.+|..|.++...|......+.+.|+.+.....+..+.+......++...
T Consensus 8 ~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e 60 (74)
T PF12329_consen 8 AEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELE 60 (74)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888877777776666666666666666666666655555554444
No 145
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=58.17 E-value=7.3 Score=40.38 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=14.7
Q ss_pred eeEEecccCCCCcceee
Q 006540 176 VCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM 192 (641)
..++-||++|+|||++.
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 45778999999999987
No 146
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=58.13 E-value=5.9 Score=44.57 Aligned_cols=27 Identities=37% Similarity=0.621 Sum_probs=21.8
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
...|..+++|.| +++..+||||||.+.
T Consensus 29 ~~ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 29 QQAIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 456778889988 577789999999873
No 147
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=57.27 E-value=4.2 Score=39.80 Aligned_cols=17 Identities=35% Similarity=0.370 Sum_probs=14.7
Q ss_pred eeEEecccCCCCcceee
Q 006540 176 VCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM 192 (641)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999965
No 148
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=57.15 E-value=45 Score=34.55 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006540 448 AELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQS 488 (641)
Q Consensus 448 ~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~~~~~ 488 (641)
.+|..+++.++.+++.|+.+++.++..+...++.+..+.+.
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~q 92 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQ 92 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555544444444444443333
No 149
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=56.63 E-value=4.3 Score=40.28 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=15.2
Q ss_pred CcceeEEecccCCCCcceee
Q 006540 173 GHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 173 G~N~~IfAYGqTGSGKTyTM 192 (641)
.....||..||.|||||+.+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHH
Confidence 44567899999999999876
No 150
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=55.94 E-value=1e+02 Score=32.77 Aligned_cols=18 Identities=50% Similarity=0.726 Sum_probs=14.3
Q ss_pred cceeEEecccCCCCccee
Q 006540 174 HNVCVLAYGQTGTGKTFT 191 (641)
Q Consensus 174 ~N~~IfAYGqTGSGKTyT 191 (641)
.---++-||+.|+|||..
T Consensus 180 QPKGvlLygppgtGktLl 197 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLL 197 (404)
T ss_pred CCcceEEecCCCCchhHH
Confidence 345589999999999853
No 151
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=55.85 E-value=50 Score=37.16 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006540 445 IRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQS 488 (641)
Q Consensus 445 ~~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~~~~~ 488 (641)
.+.+.|+.+|.+++.++..+..++.+.+..+.+.++.+......
T Consensus 59 ~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~ 102 (420)
T COG4942 59 DQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNAR 102 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence 34455666666666666666666666655555555555444333
No 152
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=55.81 E-value=5.5 Score=41.78 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=16.4
Q ss_pred cCcceeEEecccCCCCcceee
Q 006540 172 DGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 172 ~G~N~~IfAYGqTGSGKTyTM 192 (641)
.|...-++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344445788999999999877
No 153
>PHA00729 NTP-binding motif containing protein
Probab=55.23 E-value=8.9 Score=39.54 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=21.0
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 165 PILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 165 plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
..+..+..|--..|+.+|.+|+||||...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHH
Confidence 34555554433579999999999999764
No 154
>smart00338 BRLZ basic region leucin zipper.
Probab=54.98 E-value=63 Score=26.30 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 443 REIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKL 481 (641)
Q Consensus 443 ~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~ 481 (641)
+...+..|+.++..++.++..|+.++..++.++......
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888888887777766655443
No 155
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=54.55 E-value=7.4 Score=46.62 Aligned_cols=36 Identities=33% Similarity=0.671 Sum_probs=24.0
Q ss_pred cceeEEecccCCCCcceee--------cCCC--CCCCch----hHHHHHH
Q 006540 174 HNVCVLAYGQTGTGKTFTM--------DGTS--DQPGIV----PRALEEL 209 (641)
Q Consensus 174 ~N~~IfAYGqTGSGKTyTM--------~G~~--~~~GII----pRal~~L 209 (641)
.|-.++.+|+||||||.-+ ||.. .++|+| ||-+..|
T Consensus 270 ~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAai 319 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAI 319 (1172)
T ss_pred cCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHH
Confidence 3556777899999999987 3433 347776 4544443
No 156
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=54.40 E-value=11 Score=41.26 Aligned_cols=42 Identities=26% Similarity=0.442 Sum_probs=30.7
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceeecCC------CCCCCchhHHHH
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTMDGT------SDQPGIVPRALE 207 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM~G~------~~~~GIIpRal~ 207 (641)
..+|-.+|+|.+| +....||||||..+-++ .+-.|+...++.
T Consensus 35 ~~cIpkILeGrdc--ig~AkTGsGKT~AFaLPil~rLsedP~giFalvlT 82 (442)
T KOG0340|consen 35 QACIPKILEGRDC--IGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLT 82 (442)
T ss_pred hhhhHHHhccccc--ccccccCCCcchhhhHHHHHhhccCCCcceEEEec
Confidence 5678889999998 55679999999998764 233466555444
No 157
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=54.13 E-value=78 Score=35.31 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCCccchhhhcccCCCcccceEEecCC
Q 006540 360 LSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASP 408 (641)
Q Consensus 360 kSL~aLg~VI~aL~~~~~hIPYRdSKLT~LLqdsLgGnskT~mI~~VSP 408 (641)
.-|..+-+++..-+.. .++.+|+---=+-|.+.+|.+++ +||+.+..
T Consensus 194 e~l~~F~~l~~~T~~R-~~f~~r~~~Yf~~l~~~f~d~a~-~~~A~l~~ 240 (406)
T PF02388_consen 194 EELDDFYDLYKETAER-KGFSIRSLEYFENLYDAFGDKAK-FFLAELNG 240 (406)
T ss_dssp HHHHHHHHHHHHHHHH-TT-----HHHHHHHHHHCCCCEE-EEEEEECC
T ss_pred HHHHHHHHHHHHHHhh-CCCcccCHHHHHHHHHhcCCCeE-EEEEEEcH
Confidence 3466666666666554 45666776666777788876754 88888765
No 158
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=54.10 E-value=11 Score=41.36 Aligned_cols=28 Identities=46% Similarity=0.807 Sum_probs=21.4
Q ss_pred HHHHHhhcCcc---eeEEecccCCCCcceeec
Q 006540 165 PILRSALDGHN---VCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 165 plV~~vl~G~N---~~IfAYGqTGSGKTyTM~ 193 (641)
|.+...+.|.. -|||+ |+||||||.-|.
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFls 291 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFLS 291 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEeh
Confidence 56677777763 46665 999999998874
No 159
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=53.87 E-value=7.1 Score=41.13 Aligned_cols=28 Identities=36% Similarity=0.398 Sum_probs=20.3
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
.-+++..+.. +--++-.|++|+|||-++
T Consensus 23 ~~ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 23 SYLLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 3455555544 445688899999999876
No 160
>PRK10536 hypothetical protein; Provisional
Probab=53.83 E-value=5.1 Score=42.17 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=28.0
Q ss_pred EEEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 143 EFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 143 ~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
.|.|-.|-+-+..|..... .+.+ +.-+++.|++||||||..
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~-------al~~--~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK-------AIES--KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred hcCCccccCCCHHHHHHHH-------HHhc--CCeEEEECCCCCCHHHHH
Confidence 4666666666666654333 2333 348899999999999986
No 161
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.64 E-value=7.1 Score=44.13 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=21.2
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
...|..++.|.++ ++..+||||||.+.
T Consensus 17 ~~ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 17 LEVINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 4567788999975 55579999999764
No 162
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=53.31 E-value=79 Score=25.68 Aligned_cols=38 Identities=24% Similarity=0.470 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 442 RREIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKK 479 (641)
Q Consensus 442 ~~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~ 479 (641)
.+...+..|+..+..++.++..|+.++..++..+..+.
T Consensus 23 RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 23 RKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888888888877777777665544
No 163
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=53.22 E-value=6.5 Score=49.39 Aligned_cols=29 Identities=34% Similarity=0.425 Sum_probs=19.9
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeecC
Q 006540 165 PILRSALDGHNVCVLAYGQTGTGKTFTMDG 194 (641)
Q Consensus 165 plV~~vl~G~N~~IfAYGqTGSGKTyTM~G 194 (641)
.+++.+-+|...+++. .+||||||+||.+
T Consensus 424 ai~~a~~~g~r~~Ll~-maTGSGKT~tai~ 452 (1123)
T PRK11448 424 AVEKAIVEGQREILLA-MATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHhccCCeEEE-eCCCCCHHHHHHH
Confidence 3444444676554444 8999999999864
No 164
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=53.06 E-value=7.1 Score=46.81 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=17.4
Q ss_pred cCcceeEEecccCCCCcceeec
Q 006540 172 DGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 172 ~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
.|.-..++-||++|+|||++..
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHH
Confidence 4444567889999999998873
No 165
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=52.83 E-value=5.8 Score=43.05 Aligned_cols=18 Identities=39% Similarity=0.612 Sum_probs=14.8
Q ss_pred cceeEEecccCCCCccee
Q 006540 174 HNVCVLAYGQTGTGKTFT 191 (641)
Q Consensus 174 ~N~~IfAYGqTGSGKTyT 191 (641)
..+-|+..|+||||||+.
T Consensus 96 ~KSNILLiGPTGsGKTlL 113 (408)
T COG1219 96 SKSNILLIGPTGSGKTLL 113 (408)
T ss_pred eeccEEEECCCCCcHHHH
Confidence 345688899999999974
No 166
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=52.81 E-value=54 Score=35.02 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006540 445 IRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAAC 486 (641)
Q Consensus 445 ~~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~~~ 486 (641)
...+.+.-++..|+.+++.|++|..++|.+++.++.++.+..
T Consensus 248 ae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 248 AEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888999999999999999999999999988875543
No 167
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=52.62 E-value=5.2 Score=44.25 Aligned_cols=19 Identities=37% Similarity=0.384 Sum_probs=15.9
Q ss_pred ceeEEecccCCCCcceeec
Q 006540 175 NVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM~ 193 (641)
...|+-+|+||+|||+|+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4567789999999999983
No 168
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=51.83 E-value=12 Score=41.25 Aligned_cols=47 Identities=26% Similarity=0.459 Sum_probs=28.5
Q ss_pred EEEE-ec-eeecCCCCchhhHhhhHHHHHHhhcC---cceeEEecccCCCCcceee
Q 006540 142 KEFG-FD-KVFNQAASQEDVFVEVEPILRSALDG---HNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 142 ~~F~-FD-~VF~~~atQ~eVf~~v~plV~~vl~G---~N~~IfAYGqTGSGKTyTM 192 (641)
+.|. || .||+. ++.-..+...+..+..| .+..+.-.|++|||||...
T Consensus 44 ~~y~~F~~~~~G~----~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla 95 (361)
T smart00763 44 KRYRFFDHDFFGM----EEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLV 95 (361)
T ss_pred eeccccchhccCc----HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 4554 44 67764 44444433344444444 4566788999999999653
No 169
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=51.82 E-value=7.8 Score=41.27 Aligned_cols=29 Identities=31% Similarity=0.532 Sum_probs=24.1
Q ss_pred HHHHH-HhhcCcceeEEecccCCCCcceee
Q 006540 164 EPILR-SALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~-~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
-+||. ++-+|+.--|+|.|.||-|||..|
T Consensus 30 dQLV~ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHHHHHHHhcCceEEEEEeccCCccHHHHH
Confidence 34554 456899999999999999999876
No 170
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=51.69 E-value=9.8 Score=42.73 Aligned_cols=17 Identities=47% Similarity=0.599 Sum_probs=14.4
Q ss_pred eEEecccCCCCcceeec
Q 006540 177 CVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM~ 193 (641)
+|+-.|+||+|||+|+.
T Consensus 223 ~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 223 VVALVGPTGVGKTTTLA 239 (424)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56666999999999984
No 171
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=51.51 E-value=11 Score=44.84 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=28.4
Q ss_pred hhhHhhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006540 157 EDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 157 ~eVf~~v~plV~~vl-~G~N~~IfAYGqTGSGKTyTM 192 (641)
-.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 73 PHVYAIADTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 567876544444444 699999999999999999986
No 172
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=51.44 E-value=9.8 Score=42.68 Aligned_cols=18 Identities=39% Similarity=0.530 Sum_probs=15.8
Q ss_pred eeEEecccCCCCcceeec
Q 006540 176 VCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM~ 193 (641)
..|+-.|++|+|||.|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 568889999999999983
No 173
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=51.12 E-value=8.1 Score=43.59 Aligned_cols=27 Identities=41% Similarity=0.544 Sum_probs=21.4
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
...+..+++|.|+.+ ..+||||||.+.
T Consensus 115 ~~ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 115 AQVLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 456778899998765 459999999764
No 174
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=50.58 E-value=11 Score=44.94 Aligned_cols=36 Identities=31% Similarity=0.491 Sum_probs=28.7
Q ss_pred hhhHhhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006540 157 EDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 157 ~eVf~~v~plV~~vl-~G~N~~IfAYGqTGSGKTyTM 192 (641)
-.||.-.......++ .|.|-||+.-|.+|||||.+.
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 67 PHVFAIADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 567776555555554 589999999999999999986
No 175
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=50.57 E-value=13 Score=41.99 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=15.8
Q ss_pred ceeEEecccCCCCcceee
Q 006540 175 NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM 192 (641)
...|+-+|.+|+|||.|.
T Consensus 95 p~vI~lvG~~GsGKTTta 112 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTA 112 (437)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 457888899999999998
No 176
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=50.38 E-value=9.6 Score=42.51 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=15.7
Q ss_pred ceeEEecccCCCCcceee
Q 006540 175 NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM 192 (641)
..-|.-.||||.|||.|+
T Consensus 203 ~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 203 KRVIALVGPTGVGKTTTL 220 (407)
T ss_pred CcEEEEECCCCCcHHHHH
Confidence 566777899999999998
No 177
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=50.26 E-value=6.1 Score=41.84 Aligned_cols=18 Identities=50% Similarity=0.680 Sum_probs=14.6
Q ss_pred ceeEEecccCCCCcceee
Q 006540 175 NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM 192 (641)
--.|+-||++|+|||++-
T Consensus 151 PknVLFyGppGTGKTm~A 168 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cceeEEECCCCccHHHHH
Confidence 345788999999999764
No 178
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=50.17 E-value=12 Score=44.85 Aligned_cols=36 Identities=25% Similarity=0.469 Sum_probs=27.4
Q ss_pred hhhHhhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006540 157 EDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 157 ~eVf~~v~plV~~vl-~G~N~~IfAYGqTGSGKTyTM 192 (641)
-.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 75 PHiy~iA~~Ay~~m~~~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 75 PHIFAIADVAYYNMLRKKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 567765544444433 689999999999999999986
No 179
>PHA02653 RNA helicase NPH-II; Provisional
Probab=50.16 E-value=11 Score=44.74 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=19.7
Q ss_pred HHHHHHhhcCcceeEEecccCCCCccee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFT 191 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyT 191 (641)
..++..++.|.++ +..|+||||||..
T Consensus 170 ~qil~~i~~gkdv--Iv~A~TGSGKTtq 195 (675)
T PHA02653 170 LKIFEAWISRKPV--VLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHHHhCCCE--EEECCCCCCchhH
Confidence 3455666777655 8899999999975
No 180
>PRK06696 uridine kinase; Validated
Probab=50.02 E-value=14 Score=37.38 Aligned_cols=34 Identities=21% Similarity=0.109 Sum_probs=22.5
Q ss_pred hHhhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 159 VFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 159 Vf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
+.+++...|...-.+....|..-|.+|||||+..
T Consensus 6 ~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 6 LIKELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 3444433333333566777888999999999865
No 181
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=49.70 E-value=12 Score=39.48 Aligned_cols=28 Identities=36% Similarity=0.550 Sum_probs=21.2
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
.||+ ..+.--+..+-.||+|++|||.++
T Consensus 183 ~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 183 APLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 3444 445566778889999999999887
No 182
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=49.52 E-value=5.8 Score=36.41 Aligned_cols=15 Identities=47% Similarity=0.831 Sum_probs=13.1
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
++-+|++|+|||+.+
T Consensus 2 ~~i~G~~G~GKT~l~ 16 (165)
T cd01120 2 ILVFGPTGSGKTTLA 16 (165)
T ss_pred eeEeCCCCCCHHHHH
Confidence 567999999999976
No 183
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=49.44 E-value=13 Score=44.31 Aligned_cols=36 Identities=22% Similarity=0.476 Sum_probs=27.6
Q ss_pred hhhHhhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006540 157 EDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 157 ~eVf~~v~plV~~vl-~G~N~~IfAYGqTGSGKTyTM 192 (641)
-.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 67 PHIFAISDNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 567765544444443 689999999999999999986
No 184
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=49.33 E-value=10 Score=42.99 Aligned_cols=38 Identities=11% Similarity=0.138 Sum_probs=23.8
Q ss_pred cCCCcccceEEecCCCCCCHHHhHHHHHHHH--Hhhcccccccc
Q 006540 394 LGDGSKVLMLVHASPCEEDVGETICSLSFAK--RARGIESNREL 435 (641)
Q Consensus 394 LgGnskT~mI~~VSP~~~~~~ETlsTLrFA~--rar~I~~~~~~ 435 (641)
+.-..+..+|+|++..... +..|.+|- |..-|...|..
T Consensus 320 f~iP~Nl~IIgTMNt~Drs----~~~lD~AlrRRF~fi~i~p~~ 359 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS----LAVVDYALRRRFSFIDIEPGF 359 (459)
T ss_pred ccCCCCeEEEEecCccccc----hhhccHHHHhhhheEEecCCC
Confidence 4446788999999987754 44566664 34444444443
No 185
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=49.32 E-value=13 Score=38.72 Aligned_cols=27 Identities=37% Similarity=0.356 Sum_probs=19.1
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
+.++..+..|.++ +-+|++|+|||...
T Consensus 12 ~~~l~~l~~g~~v--LL~G~~GtGKT~lA 38 (262)
T TIGR02640 12 SRALRYLKSGYPV--HLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 4445555566655 45899999999865
No 186
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=49.30 E-value=12 Score=44.58 Aligned_cols=36 Identities=28% Similarity=0.526 Sum_probs=27.8
Q ss_pred hhhHhhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006540 157 EDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 157 ~eVf~~v~plV~~vl-~G~N~~IfAYGqTGSGKTyTM 192 (641)
-.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 67 PHIYALADNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 457765544444444 689999999999999999986
No 187
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=49.21 E-value=12 Score=44.76 Aligned_cols=43 Identities=30% Similarity=0.556 Sum_probs=32.0
Q ss_pred ceeecCCCCchhhHhh---h----HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 147 DKVFNQAASQEDVFVE---V----EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 147 D~VF~~~atQ~eVf~~---v----~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
++-+++++-|..+|.. + ..+++.+| |.|+.|-+ |||+|||+.-
T Consensus 44 ~~~~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~l--PTG~GKTfIA 93 (746)
T KOG0354|consen 44 SHSLDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIAL--PTGSGKTFIA 93 (746)
T ss_pred cCCCChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEe--ecCCCccchH
Confidence 5556667777777632 1 46899999 99987766 9999999863
No 188
>PRK10865 protein disaggregation chaperone; Provisional
Probab=49.13 E-value=11 Score=46.07 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=29.7
Q ss_pred EEeceeecCCCCchhhHhhhHHHHHHhhcCcc------eeEEecccCCCCcceee
Q 006540 144 FGFDKVFNQAASQEDVFVEVEPILRSALDGHN------VCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 144 F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N------~~IfAYGqTGSGKTyTM 192 (641)
.-+.+|++ |...-..|...|..+..|.. +.++-+|++|+|||++.
T Consensus 565 ~l~~~viG----Q~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 565 ELHHRVIG----QNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred HhCCeEeC----CHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 34566775 45555555555555544432 57788899999999976
No 189
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=49.00 E-value=12 Score=44.46 Aligned_cols=36 Identities=28% Similarity=0.484 Sum_probs=28.0
Q ss_pred hhhHhhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006540 157 EDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 157 ~eVf~~v~plV~~vl-~G~N~~IfAYGqTGSGKTyTM 192 (641)
-.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 68 PHLFAIANLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 557766544444444 699999999999999999986
No 190
>PRK14974 cell division protein FtsY; Provisional
Probab=48.85 E-value=13 Score=40.59 Aligned_cols=19 Identities=42% Similarity=0.604 Sum_probs=16.6
Q ss_pred cceeEEecccCCCCcceee
Q 006540 174 HNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 174 ~N~~IfAYGqTGSGKTyTM 192 (641)
....|.-.|++|+|||.|+
T Consensus 139 ~~~vi~~~G~~GvGKTTti 157 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTI 157 (336)
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3467889999999999998
No 191
>PHA02244 ATPase-like protein
Probab=48.76 E-value=15 Score=40.72 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=17.2
Q ss_pred HHHHhhcCcceeEEecccCCCCcceee
Q 006540 166 ILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 166 lV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
+...+-.|.++ +-+|+||+|||+..
T Consensus 112 i~r~l~~~~PV--LL~GppGtGKTtLA 136 (383)
T PHA02244 112 IAKIVNANIPV--FLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHHhcCCCE--EEECCCCCCHHHHH
Confidence 33333456655 44899999999876
No 192
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.69 E-value=1e+02 Score=32.62 Aligned_cols=30 Identities=30% Similarity=0.530 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 449 ELEEDMREAEAECQNVRNQIKEVESLLSEK 478 (641)
Q Consensus 449 ~L~~el~~l~~e~~~l~~qi~~~e~~~~E~ 478 (641)
+++.+...++.+++.|..++.++....++.
T Consensus 42 ~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~ 71 (265)
T COG3883 42 ELQKEKKNIQNEIESLDNQIEEIQSKIDEL 71 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 193
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=48.54 E-value=13 Score=40.10 Aligned_cols=17 Identities=41% Similarity=0.657 Sum_probs=14.6
Q ss_pred eeEEecccCCCCcceee
Q 006540 176 VCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM 192 (641)
..|.-.|++|+|||.|+
T Consensus 115 ~vi~lvGpnGsGKTTt~ 131 (318)
T PRK10416 115 FVILVVGVNGVGKTTTI 131 (318)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46667799999999998
No 194
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=48.52 E-value=9.9 Score=44.27 Aligned_cols=27 Identities=44% Similarity=0.551 Sum_probs=21.4
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
...|..+++|.|+ ++.++||||||.+.
T Consensus 37 ~~~ip~~l~G~Dv--i~~ApTGSGKTlaf 63 (572)
T PRK04537 37 ALTLPVALPGGDV--AGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHHHhCCCCE--EEEcCCCCcHHHHH
Confidence 4567788999985 55779999999764
No 195
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=48.47 E-value=12 Score=41.65 Aligned_cols=51 Identities=20% Similarity=0.284 Sum_probs=35.3
Q ss_pred EEEEeceeecCCCCchhhHhhh-HHHHHHhhc--C--cceeEEecccCCCCcceee
Q 006540 142 KEFGFDKVFNQAASQEDVFVEV-EPILRSALD--G--HNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 142 ~~F~FD~VF~~~atQ~eVf~~v-~plV~~vl~--G--~N~~IfAYGqTGSGKTyTM 192 (641)
..+.||.+.+.----..+.+.+ ..+..+.+. | .---+.-||+.|+|||+..
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 5678888876655545555555 677777763 2 3345778999999999863
No 196
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=48.42 E-value=6.7 Score=42.36 Aligned_cols=36 Identities=22% Similarity=0.419 Sum_probs=25.1
Q ss_pred eeEEecccCCCCcceeec---C-----C--------CCCCCchhHHHHHHHH
Q 006540 176 VCVLAYGQTGTGKTFTMD---G-----T--------SDQPGIVPRALEELFR 211 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM~---G-----~--------~~~~GIIpRal~~LF~ 211 (641)
.....||+|||||++.+- + + ..+.|+||--=...++
T Consensus 88 ~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~ 139 (369)
T PF02456_consen 88 FIGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWE 139 (369)
T ss_pred eEEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHH
Confidence 345679999999999873 2 1 1457999876555554
No 197
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=48.34 E-value=96 Score=33.01 Aligned_cols=85 Identities=25% Similarity=0.399 Sum_probs=51.5
Q ss_pred EEEEEeCCceEEEEeceeecCCCCchhhHhhh-HHHHHHhhc---Cc--ceeEEecccCCCCcceeec------------
Q 006540 132 KVVVRSGGSKKEFGFDKVFNQAASQEDVFVEV-EPILRSALD---GH--NVCVLAYGQTGTGKTFTMD------------ 193 (641)
Q Consensus 132 ~v~v~~~~~~~~F~FD~VF~~~atQ~eVf~~v-~plV~~vl~---G~--N~~IfAYGqTGSGKTyTM~------------ 193 (641)
+|.+.....+-...|-.|=+-+..-++|-+.| -|+.+.-+- |. --.++.||+.|+|||-..-
T Consensus 140 si~ml~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~fir 219 (408)
T KOG0727|consen 140 SISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIR 219 (408)
T ss_pred cccccCCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheee
Confidence 34433333333445555555556666777766 566665441 33 2358999999999985431
Q ss_pred --CCC---CCCCchhHHHHHHHHHHhcC
Q 006540 194 --GTS---DQPGIVPRALEELFRQAALD 216 (641)
Q Consensus 194 --G~~---~~~GIIpRal~~LF~~~~~~ 216 (641)
|+. ..-|==||.++++|....++
T Consensus 220 vvgsefvqkylgegprmvrdvfrlaken 247 (408)
T KOG0727|consen 220 VVGSEFVQKYLGEGPRMVRDVFRLAKEN 247 (408)
T ss_pred eccHHHHHHHhccCcHHHHHHHHHHhcc
Confidence 211 12366799999999876554
No 198
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=48.10 E-value=12 Score=44.53 Aligned_cols=37 Identities=30% Similarity=0.473 Sum_probs=28.1
Q ss_pred chhhHhhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006540 156 QEDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 156 Q~eVf~~v~plV~~vl-~G~N~~IfAYGqTGSGKTyTM 192 (641)
.-.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 72 ~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 72 PPHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CCCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 3567766543343433 689999999999999999986
No 199
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=47.68 E-value=13 Score=39.10 Aligned_cols=18 Identities=39% Similarity=0.528 Sum_probs=14.3
Q ss_pred eeEEecccCCCCcceeec
Q 006540 176 VCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM~ 193 (641)
.+|...|++|+|||.|..
T Consensus 73 ~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIA 90 (272)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 455555999999999983
No 200
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=47.64 E-value=7.3 Score=41.29 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=18.4
Q ss_pred cCcceeEEecccCCCCcceee
Q 006540 172 DGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 172 ~G~N~~IfAYGqTGSGKTyTM 192 (641)
.|++-+||..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 388999999999999999744
No 201
>PF05729 NACHT: NACHT domain
Probab=47.61 E-value=7.2 Score=36.16 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=14.0
Q ss_pred eEEecccCCCCcceee
Q 006540 177 CVLAYGQTGTGKTFTM 192 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM 192 (641)
.++.+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 3678999999999987
No 202
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.49 E-value=18 Score=45.26 Aligned_cols=17 Identities=41% Similarity=0.575 Sum_probs=13.9
Q ss_pred eeEEecccCCCCcceee
Q 006540 176 VCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM 192 (641)
..+.-+|+||||||..+
T Consensus 27 gl~~I~G~nGaGKSTil 43 (1042)
T TIGR00618 27 PIFLICGKTGAGKTTLL 43 (1042)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45667899999999765
No 203
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=47.07 E-value=11 Score=41.05 Aligned_cols=30 Identities=33% Similarity=0.530 Sum_probs=23.5
Q ss_pred hhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 162 EVEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 162 ~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
++..++..++.+. ..|+..|.||||||.+|
T Consensus 166 ~~~~~L~~~v~~~-~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 166 GVARLLRAIVAAR-LAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHHHhCC-CeEEEECCCCCCHHHHH
Confidence 3466777777654 67888899999999877
No 204
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.96 E-value=9 Score=45.26 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=23.9
Q ss_pred chhhHhhhHHHHHHhhcCc--ceeEEecccCCCCcceeec
Q 006540 156 QEDVFVEVEPILRSALDGH--NVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 156 Q~eVf~~v~plV~~vl~G~--N~~IfAYGqTGSGKTyTM~ 193 (641)
|.....++..++..+.-+. .-.++-||++|+|||.++.
T Consensus 89 ~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 89 HKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIK 128 (637)
T ss_pred cHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHH
Confidence 3444444555555544332 2247889999999999984
No 205
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=46.52 E-value=14 Score=44.11 Aligned_cols=36 Identities=31% Similarity=0.555 Sum_probs=27.2
Q ss_pred hhhHhhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006540 157 EDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 157 ~eVf~~v~plV~~vl-~G~N~~IfAYGqTGSGKTyTM 192 (641)
-.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 69 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 69 PHVFAIADAAYRAMINEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEECCCCCCchhHH
Confidence 457765533333333 689999999999999999986
No 206
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=46.41 E-value=11 Score=37.39 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=18.9
Q ss_pred HHhhcCc---ceeEEecccCCCCcceee
Q 006540 168 RSALDGH---NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 168 ~~vl~G~---N~~IfAYGqTGSGKTyTM 192 (641)
+.++.|- ...+.-||++|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4455543 667889999999999765
No 207
>PRK04328 hypothetical protein; Provisional
Probab=46.30 E-value=13 Score=38.38 Aligned_cols=27 Identities=37% Similarity=0.501 Sum_probs=21.8
Q ss_pred HHHHHhhcC---cceeEEecccCCCCccee
Q 006540 165 PILRSALDG---HNVCVLAYGQTGTGKTFT 191 (641)
Q Consensus 165 plV~~vl~G---~N~~IfAYGqTGSGKTyT 191 (641)
+-++.++.| ....++.+|++|||||.-
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 456788876 578899999999999853
No 208
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=46.22 E-value=14 Score=44.05 Aligned_cols=36 Identities=25% Similarity=0.481 Sum_probs=27.5
Q ss_pred hhhHhhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006540 157 EDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 157 ~eVf~~v~plV~~vl-~G~N~~IfAYGqTGSGKTyTM 192 (641)
-.||.-.......++ .|.|-||+.-|.+|||||.+.
T Consensus 67 PHifaiA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 67 PHIFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 457765544444443 799999999999999999986
No 209
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=46.17 E-value=40 Score=37.36 Aligned_cols=15 Identities=60% Similarity=0.902 Sum_probs=13.0
Q ss_pred eEEecccCCCCccee
Q 006540 177 CVLAYGQTGTGKTFT 191 (641)
Q Consensus 177 ~IfAYGqTGSGKTyT 191 (641)
-|+-||+.|+|||-.
T Consensus 187 GVLLYGPPGTGKTLL 201 (406)
T COG1222 187 GVLLYGPPGTGKTLL 201 (406)
T ss_pred ceEeeCCCCCcHHHH
Confidence 489999999999853
No 210
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=46.12 E-value=13 Score=42.59 Aligned_cols=27 Identities=33% Similarity=0.545 Sum_probs=21.1
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
...+..++.|.|+ ++..+||||||.+.
T Consensus 149 ~~aip~il~g~dv--iv~ApTGSGKTlay 175 (518)
T PLN00206 149 MQAIPAALSGRSL--LVSADTGSGKTASF 175 (518)
T ss_pred HHHHHHHhcCCCE--EEEecCCCCccHHH
Confidence 4567788899875 66679999999753
No 211
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=46.10 E-value=14 Score=44.60 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=24.6
Q ss_pred chhhHhhhHHHHHHhhcCc------ceeEEecccCCCCcceee
Q 006540 156 QEDVFVEVEPILRSALDGH------NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 156 Q~eVf~~v~plV~~vl~G~------N~~IfAYGqTGSGKTyTM 192 (641)
|++.-..+...|.....|. .+.++-+|+||+|||++.
T Consensus 463 Q~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 463 QDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHH
Confidence 3444444444455444454 357899999999999987
No 212
>PRK00131 aroK shikimate kinase; Reviewed
Probab=45.96 E-value=9.1 Score=36.11 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=14.9
Q ss_pred eeEEecccCCCCcceee
Q 006540 176 VCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM 192 (641)
.+|+.+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 47899999999999874
No 213
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=45.96 E-value=9 Score=43.54 Aligned_cols=62 Identities=27% Similarity=0.412 Sum_probs=37.7
Q ss_pred HHHhhcCcceeEEecccCCCCcceeecCC---------C-----CCCCchhH---------HHHHHHHHHhcCCCceEEE
Q 006540 167 LRSALDGHNVCVLAYGQTGTGKTFTMDGT---------S-----DQPGIVPR---------ALEELFRQAALDNSSSVTF 223 (641)
Q Consensus 167 V~~vl~G~N~~IfAYGqTGSGKTyTM~G~---------~-----~~~GIIpR---------al~~LF~~~~~~~~~~~~v 223 (641)
|..+.+|... +|++|||||||+...++ + ...|.-|+ .+.+||+.... ..|.-
T Consensus 105 ip~i~~Grdl--~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k---~~~~s 179 (482)
T KOG0335|consen 105 IPIISGGRDL--MACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARK---FSYLS 179 (482)
T ss_pred cceeecCCce--EEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHh---hcccc
Confidence 4445566665 89999999999998653 0 01112232 24566665432 34555
Q ss_pred EEeEEEEecc
Q 006540 224 SMSMLEVYMG 233 (641)
Q Consensus 224 ~vS~lEIYnE 233 (641)
.+-.+.+|+.
T Consensus 180 ~~~~~~~ygg 189 (482)
T KOG0335|consen 180 GMKSVVVYGG 189 (482)
T ss_pred cceeeeeeCC
Confidence 6667788877
No 214
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=45.83 E-value=11 Score=44.63 Aligned_cols=27 Identities=37% Similarity=0.368 Sum_probs=18.6
Q ss_pred HHHhhcCcceeEEecccCCCCcceeecC
Q 006540 167 LRSALDGHNVCVLAYGQTGTGKTFTMDG 194 (641)
Q Consensus 167 V~~vl~G~N~~IfAYGqTGSGKTyTM~G 194 (641)
|..++... ..++..|++|+|||+|+..
T Consensus 166 v~~~l~~~-~~~lI~GpPGTGKT~t~~~ 192 (637)
T TIGR00376 166 VSFALSSK-DLFLIHGPPGTGKTRTLVE 192 (637)
T ss_pred HHHHhcCC-CeEEEEcCCCCCHHHHHHH
Confidence 44444332 2456899999999999853
No 215
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=45.80 E-value=37 Score=37.37 Aligned_cols=47 Identities=30% Similarity=0.639 Sum_probs=34.9
Q ss_pred HHHHhhcCc---ceeEEecccCCCCcc---------------eeecCCC--CCC-CchhHHHHHHHHH
Q 006540 166 ILRSALDGH---NVCVLAYGQTGTGKT---------------FTMDGTS--DQP-GIVPRALEELFRQ 212 (641)
Q Consensus 166 lV~~vl~G~---N~~IfAYGqTGSGKT---------------yTM~G~~--~~~-GIIpRal~~LF~~ 212 (641)
.+.++-.|+ .-.+.-.|++|+||| ||+.|++ ++| +|||.-++..|..
T Consensus 76 ~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L~P~~~r~~~~~ 143 (358)
T PF08298_consen 76 YFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHLFPKELRREFED 143 (358)
T ss_pred HHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhhCCHhHHHHHHH
Confidence 455555665 556888999999997 6777765 333 9999999988753
No 216
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=45.56 E-value=76 Score=38.25 Aligned_cols=36 Identities=14% Similarity=0.315 Sum_probs=18.6
Q ss_pred cccceeeEeCCC--CCeEe---cCcEEEEcCChHHHHHHHH
Q 006540 252 TRCNLNIQTDAK--GTVEI---EGLTEVQIPDFTKARWWYN 287 (641)
Q Consensus 252 ~~~~L~i~ed~~--g~v~V---~glt~v~V~s~~e~~~ll~ 287 (641)
..+++.++.|+- ..+|+ .|+..|.+.=...+..++.
T Consensus 365 ~~cpI~L~~Dp~~~~ryy~~H~~GvH~V~L~wl~~L~~fl~ 405 (717)
T PF10168_consen 365 YSCPIRLHRDPLNPDRYYCYHNAGVHSVTLPWLSALQEFLE 405 (717)
T ss_pred CCcceEEEecCCCCceEEEEecCccEEEEeccHHHHHHHhc
Confidence 345677777763 22222 4666666654444444433
No 217
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=45.44 E-value=11 Score=43.07 Aligned_cols=46 Identities=28% Similarity=0.390 Sum_probs=27.7
Q ss_pred EEEeceeecCCCCchhhHhhhHHHHHHhhc-------C--cceeEEecccCCCCcceee
Q 006540 143 EFGFDKVFNQAASQEDVFVEVEPILRSALD-------G--HNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 143 ~F~FD~VF~~~atQ~eVf~~v~plV~~vl~-------G--~N~~IfAYGqTGSGKTyTM 192 (641)
..+||.|.+.+...+++. .++..+.. | ..-.|+-||++|+|||+..
T Consensus 51 ~~~~~di~g~~~~k~~l~----~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELM----EIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCHHHhCCHHHHHHHHH----HHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHH
Confidence 467787766544333333 33332111 2 2335888999999999986
No 218
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=45.30 E-value=13 Score=43.02 Aligned_cols=41 Identities=24% Similarity=0.433 Sum_probs=26.4
Q ss_pred EeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 145 GFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 145 ~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
.||.+++.+ ..- ..+...++.+....|+-||++|+|||+.-
T Consensus 63 ~f~~iiGqs----~~i---~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 63 SFDEIIGQE----EGI---KALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CHHHeeCcH----HHH---HHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 566666543 222 33333445566677888999999999754
No 219
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=44.79 E-value=9.3 Score=36.81 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=13.2
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
|+.+|..|||||+.-
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999864
No 220
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=44.71 E-value=13 Score=37.30 Aligned_cols=25 Identities=40% Similarity=0.554 Sum_probs=19.8
Q ss_pred HHHhhcC---cceeEEecccCCCCccee
Q 006540 167 LRSALDG---HNVCVLAYGQTGTGKTFT 191 (641)
Q Consensus 167 V~~vl~G---~N~~IfAYGqTGSGKTyT 191 (641)
++.++.| .+..++.+|++|||||..
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l 35 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTL 35 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHH
Confidence 5667744 478899999999999864
No 221
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=44.58 E-value=8.1 Score=39.64 Aligned_cols=20 Identities=45% Similarity=0.570 Sum_probs=16.9
Q ss_pred ceeEEecccCCCCcceeecC
Q 006540 175 NVCVLAYGQTGTGKTFTMDG 194 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM~G 194 (641)
...++-||+.|+|||++.-+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~ 31 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKY 31 (220)
T ss_pred CcEEEEECCCCCCHHHHHHh
Confidence 45699999999999998744
No 222
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=44.53 E-value=12 Score=41.14 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=14.0
Q ss_pred EEecccCCCCcceeec
Q 006540 178 VLAYGQTGTGKTFTMD 193 (641)
Q Consensus 178 IfAYGqTGSGKTyTM~ 193 (641)
++..|+||||||+++.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 5789999999999874
No 223
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=44.47 E-value=7.8 Score=42.96 Aligned_cols=37 Identities=32% Similarity=0.658 Sum_probs=26.1
Q ss_pred eEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEec
Q 006540 177 CVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYM 232 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYn 232 (641)
.|+-||.+||||||++ +.+|+..+.. .|.++.+|-|.
T Consensus 32 ~~~iyG~sgTGKT~~~--------------r~~l~~~n~~-----~vw~n~~ecft 68 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLV--------------RQLLRKLNLE-----NVWLNCVECFT 68 (438)
T ss_pred eEEEeccCCCchhHHH--------------HHHHhhcCCc-----ceeeehHHhcc
Confidence 4689999999999976 4556554332 36677777764
No 224
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=44.44 E-value=14 Score=43.55 Aligned_cols=27 Identities=37% Similarity=0.596 Sum_probs=21.1
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
...|..++.|.+ +++.+|||||||.+.
T Consensus 34 ~~ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 34 AECIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 346677788887 577789999999874
No 225
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=44.15 E-value=1.3e+02 Score=25.03 Aligned_cols=47 Identities=15% Similarity=0.245 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006540 445 IRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLED 491 (641)
Q Consensus 445 ~~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~~~~~l~~ 491 (641)
.++.+|+..+.-.+.-+..|.+.+-.-+..+..+++.+..+..++.+
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666666665555555544433
No 226
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=43.92 E-value=3.8e+02 Score=27.57 Aligned_cols=63 Identities=24% Similarity=0.284 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccCCCchhhHHHhhcC
Q 006540 447 MAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLEDEEKSFVSPKENLKEAAET 509 (641)
Q Consensus 447 i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 509 (641)
+..|+.++..-..+++.|+.+++..|..+.-..-...+....++.+++..++-.+-++-++.-
T Consensus 76 m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~qKLksi~~A~krpvsSEelIKyAHrI 138 (272)
T KOG4552|consen 76 MRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQKLKSIKEAEKRPVSSEELIKYAHRI 138 (272)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 444444444444455555555555444443222222223333455556666766666655543
No 227
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=43.88 E-value=14 Score=43.33 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=20.8
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
...|..++.|.++.+. ++||||||.+.
T Consensus 31 ~~ai~~il~g~dvlv~--apTGsGKTl~y 57 (607)
T PRK11057 31 QEIIDAVLSGRDCLVV--MPTGGGKSLCY 57 (607)
T ss_pred HHHHHHHHcCCCEEEE--cCCCchHHHHH
Confidence 4566778899987554 69999999753
No 228
>PF13173 AAA_14: AAA domain
Probab=43.88 E-value=8.5 Score=35.25 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=14.7
Q ss_pred eEEecccCCCCcceeec
Q 006540 177 CVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM~ 193 (641)
.++-+|+.|+|||+.|.
T Consensus 4 ~~~l~G~R~vGKTtll~ 20 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLK 20 (128)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57889999999999873
No 229
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=43.80 E-value=15 Score=36.87 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=22.1
Q ss_pred HHHHHhhcC---cceeEEecccCCCCcceee
Q 006540 165 PILRSALDG---HNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 165 plV~~vl~G---~N~~IfAYGqTGSGKTyTM 192 (641)
+-++.++.| ...++.-+|++|||||..+
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 456777875 4667889999999999865
No 230
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=43.70 E-value=8.1 Score=31.86 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=12.7
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 466799999999877
No 231
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=43.70 E-value=15 Score=44.22 Aligned_cols=17 Identities=41% Similarity=0.442 Sum_probs=15.4
Q ss_pred eeEEecccCCCCcceee
Q 006540 176 VCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM 192 (641)
.+|.-.|+||+|||.|+
T Consensus 186 ~Vi~lVGpnGvGKTTTi 202 (767)
T PRK14723 186 GVLALVGPTGVGKTTTT 202 (767)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 47788999999999998
No 232
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=43.53 E-value=9.8 Score=35.45 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=12.8
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
|+..|..|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999864
No 233
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=43.51 E-value=9.7 Score=40.12 Aligned_cols=21 Identities=24% Similarity=0.563 Sum_probs=19.0
Q ss_pred cCcceeEEecccCCCCcceee
Q 006540 172 DGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 172 ~G~N~~IfAYGqTGSGKTyTM 192 (641)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 489999999999999999865
No 234
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=43.50 E-value=16 Score=43.86 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=23.4
Q ss_pred chhhHhhhHHHHHHhhcCc------ceeEEecccCCCCcceee
Q 006540 156 QEDVFVEVEPILRSALDGH------NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 156 Q~eVf~~v~plV~~vl~G~------N~~IfAYGqTGSGKTyTM 192 (641)
|+++-+.+...|.....|. .+.++-+|+||+|||++.
T Consensus 459 Q~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 459 QDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELA 501 (731)
T ss_pred cHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHH
Confidence 4444444444444444444 246788999999999876
No 235
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=43.47 E-value=13 Score=41.55 Aligned_cols=37 Identities=35% Similarity=0.537 Sum_probs=27.4
Q ss_pred CchhhHhhhHHHHHHhhcCcceeEEecccCCCCccee
Q 006540 155 SQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFT 191 (641)
Q Consensus 155 tQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyT 191 (641)
.|+.+..+-.++=.-+-.|.-...+-||+.|+|||..
T Consensus 28 GQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 28 GQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred ChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 4666765555555555567777888899999999975
No 236
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=43.41 E-value=12 Score=39.63 Aligned_cols=37 Identities=27% Similarity=0.241 Sum_probs=23.3
Q ss_pred CCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 152 QAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 152 ~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
+-..|.++-+.| .+.+-+|.+ ++.-.+||+|||.+..
T Consensus 9 ~r~~Q~~~m~~v---~~~~~~~~~--~~~eapTGtGKTl~~L 45 (289)
T smart00489 9 PYPIQYEFMEEL---KRVLDRGKI--GILESPTGTGKTLSLL 45 (289)
T ss_pred CCHHHHHHHHHH---HHHHHcCCc--EEEECCCCcchhHHHH
Confidence 344555554444 344446754 4566799999999874
No 237
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=43.41 E-value=12 Score=39.63 Aligned_cols=37 Identities=27% Similarity=0.241 Sum_probs=23.3
Q ss_pred CCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 152 QAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 152 ~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
+-..|.++-+.| .+.+-+|.+ ++.-.+||+|||.+..
T Consensus 9 ~r~~Q~~~m~~v---~~~~~~~~~--~~~eapTGtGKTl~~L 45 (289)
T smart00488 9 PYPIQYEFMEEL---KRVLDRGKI--GILESPTGTGKTLSLL 45 (289)
T ss_pred CCHHHHHHHHHH---HHHHHcCCc--EEEECCCCcchhHHHH
Confidence 344555554444 344446754 4566799999999874
No 238
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=43.29 E-value=1e+02 Score=35.23 Aligned_cols=45 Identities=11% Similarity=0.147 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006540 445 IRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSL 489 (641)
Q Consensus 445 ~~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~~~~~l 489 (641)
....+|+++|..++.|++.+..+.+.+|..+++++..+..+...+
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345667777777776666666666666666666655555554444
No 239
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=43.23 E-value=16 Score=43.96 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=27.5
Q ss_pred hhhHhhhHHHHHHh-hcCcceeEEecccCCCCcceee
Q 006540 157 EDVFVEVEPILRSA-LDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 157 ~eVf~~v~plV~~v-l~G~N~~IfAYGqTGSGKTyTM 192 (641)
-.||.-.......+ -.|.|-||+.-|.+|||||.|.
T Consensus 72 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 72 PHVFAIADKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred CcHHHHHHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 45776554444444 3789999999999999999986
No 240
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=43.21 E-value=12 Score=43.07 Aligned_cols=45 Identities=24% Similarity=0.311 Sum_probs=30.4
Q ss_pred EEEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 143 EFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 143 ~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
.+.||.+++.+..=..+.+. +..+ ...+..|+-+|.+||||++.-
T Consensus 192 ~~~~~~liG~s~~~~~~~~~----~~~~-a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQ----ARVV-ARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred cCccCceEECCHHHHHHHHH----HHHH-hCcCCCEEEECCCCccHHHHH
Confidence 36888888765543333333 3332 256778999999999999754
No 241
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=43.04 E-value=17 Score=43.50 Aligned_cols=37 Identities=32% Similarity=0.494 Sum_probs=28.3
Q ss_pred chhhHhhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006540 156 QEDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 156 Q~eVf~~v~plV~~vl-~G~N~~IfAYGqTGSGKTyTM 192 (641)
.-.||.-.......++ .|.|-||+.-|.+|||||.+.
T Consensus 71 ~PHiyaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 71 PPHIFAIADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 3567875544444443 699999999999999999985
No 242
>PRK07261 topology modulation protein; Provisional
Probab=42.90 E-value=10 Score=36.84 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=13.0
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
|+..|.+|||||...
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999765
No 243
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=42.80 E-value=17 Score=40.81 Aligned_cols=17 Identities=47% Similarity=0.700 Sum_probs=15.3
Q ss_pred eeEEecccCCCCcceee
Q 006540 176 VCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM 192 (641)
.-++.+|+||||||.++
T Consensus 45 ~h~lvig~tgSGKt~~~ 61 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF 61 (469)
T ss_pred eEEEEEeCCCCCcccee
Confidence 56789999999999988
No 244
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=42.20 E-value=16 Score=42.59 Aligned_cols=27 Identities=41% Similarity=0.630 Sum_probs=21.7
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
..+|..+++|.|+ ++..+||+|||.+.
T Consensus 19 ~~~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 19 EEIISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 5677888999986 44569999999874
No 245
>PRK08118 topology modulation protein; Reviewed
Probab=41.99 E-value=11 Score=36.60 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=12.2
Q ss_pred EEecccCCCCccee
Q 006540 178 VLAYGQTGTGKTFT 191 (641)
Q Consensus 178 IfAYGqTGSGKTyT 191 (641)
|+..|+.|||||+.
T Consensus 4 I~I~G~~GsGKSTl 17 (167)
T PRK08118 4 IILIGSGGSGKSTL 17 (167)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999953
No 246
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=41.76 E-value=9.1 Score=42.60 Aligned_cols=17 Identities=41% Similarity=0.606 Sum_probs=14.4
Q ss_pred eeEEecccCCCCcceee
Q 006540 176 VCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM 192 (641)
--++.+|+||||||..|
T Consensus 43 ~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 43 AHTMIIGTTGTGKTTQI 59 (410)
T ss_pred ccEEEEcCCCCCHHHHH
Confidence 35788999999999865
No 247
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=41.65 E-value=18 Score=39.40 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=21.2
Q ss_pred HHHhhcCcceeEEecccCCCCcceee
Q 006540 167 LRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 167 V~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
++.+.+|.+..++..++||||||...
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 45667888777888899999999874
No 248
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=41.56 E-value=11 Score=36.43 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=13.0
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
|+.+|+.|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999654
No 249
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=41.52 E-value=99 Score=24.36 Aligned_cols=31 Identities=32% Similarity=0.571 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 443 REIRMAELEEDMREAEAECQNVRNQIKEVES 473 (641)
Q Consensus 443 ~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~ 473 (641)
+...+..++.++..|+.++..|+.++..++.
T Consensus 23 kk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 23 KKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445667788888888888888877776654
No 250
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=41.27 E-value=19 Score=40.68 Aligned_cols=18 Identities=39% Similarity=0.576 Sum_probs=15.1
Q ss_pred eeEEecccCCCCcceeec
Q 006540 176 VCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM~ 193 (641)
..|+..|++|+|||.|+.
T Consensus 224 ~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457778999999999973
No 251
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=41.02 E-value=20 Score=43.69 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=23.8
Q ss_pred hhHhhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 158 DVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 158 eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
-||.....+++.+-++.+ ++..|+||||||..+
T Consensus 5 Pi~~~~~~i~~~l~~~~~--vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 5 PVAAVLPELLTALKTAPQ--VLLKAPTGAGKSTWL 37 (812)
T ss_pred CHHHHHHHHHHHHHhCCC--EEEEcCCCCCHHHHH
Confidence 355555667777655543 677899999999876
No 252
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=40.97 E-value=18 Score=36.68 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=21.2
Q ss_pred HHHHHhhcC---cceeEEecccCCCCcceee
Q 006540 165 PILRSALDG---HNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 165 plV~~vl~G---~N~~IfAYGqTGSGKTyTM 192 (641)
+-++.++.| ...+++.+|.+|||||+-.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 456777764 2677888899999998764
No 253
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=40.84 E-value=15 Score=39.37 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=19.7
Q ss_pred hcCcceeEEecccCCCCcceeec
Q 006540 171 LDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 171 l~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
-..-+..++-||+.|||||.+|.
T Consensus 19 ~~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 19 KSSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred ccCCceEEEEECCCCCCHHHHHH
Confidence 45677889999999999999984
No 254
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=40.81 E-value=9.9 Score=43.50 Aligned_cols=18 Identities=39% Similarity=0.398 Sum_probs=15.6
Q ss_pred eeEEecccCCCCcceeec
Q 006540 176 VCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM~ 193 (641)
..|.-.|+||+|||.|+-
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 467888999999999983
No 255
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=40.57 E-value=9.9 Score=36.46 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=14.6
Q ss_pred eeEEecccCCCCcceeec
Q 006540 176 VCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM~ 193 (641)
...+-||++|+|||..|.
T Consensus 20 g~~vi~G~Ng~GKStil~ 37 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTILE 37 (202)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 355678999999999883
No 256
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=40.48 E-value=12 Score=34.73 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=13.7
Q ss_pred eEEecccCCCCcceee
Q 006540 177 CVLAYGQTGTGKTFTM 192 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM 192 (641)
+|+.+|..|||||+.-
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999999864
No 257
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=40.48 E-value=10 Score=35.87 Aligned_cols=14 Identities=29% Similarity=0.544 Sum_probs=11.2
Q ss_pred EEecccCCCCccee
Q 006540 178 VLAYGQTGTGKTFT 191 (641)
Q Consensus 178 IfAYGqTGSGKTyT 191 (641)
|+..|++|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 45679999999854
No 258
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=40.30 E-value=19 Score=42.79 Aligned_cols=36 Identities=22% Similarity=0.504 Sum_probs=26.8
Q ss_pred hhhHhhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006540 157 EDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 157 ~eVf~~v~plV~~vl-~G~N~~IfAYGqTGSGKTyTM 192 (641)
..||.-.......++ .|.|-||+.-|.+|||||.|+
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 67 PHIFAIADAAYQSLVTYNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred CcHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 457764433344433 589999999999999999997
No 259
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=40.30 E-value=1.1e+02 Score=31.70 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 446 RMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLF 482 (641)
Q Consensus 446 ~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~ 482 (641)
++..+..++..++..++.+..++...+.++.+.++.+
T Consensus 57 e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi 93 (251)
T PF11932_consen 57 EYRQLEREIENLEVYNEQLERQVASQEQELASLEQQI 93 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433333
No 260
>PRK13767 ATP-dependent helicase; Provisional
Probab=40.12 E-value=16 Score=44.92 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=20.2
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
...+..+++|.|+.|. .+||||||...
T Consensus 38 ~~Ai~~il~g~nvli~--APTGSGKTlaa 64 (876)
T PRK13767 38 RYAIPLIHEGKNVLIS--SPTGSGKTLAA 64 (876)
T ss_pred HHHHHHHHcCCCEEEE--CCCCCcHHHHH
Confidence 3455667889987664 59999999874
No 261
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=40.08 E-value=20 Score=43.86 Aligned_cols=37 Identities=30% Similarity=0.397 Sum_probs=24.7
Q ss_pred chhhHhhhHHHHHHhhcCcc------eeEEecccCCCCcceee
Q 006540 156 QEDVFVEVEPILRSALDGHN------VCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 156 Q~eVf~~v~plV~~vl~G~N------~~IfAYGqTGSGKTyTM 192 (641)
|++.-..|...|..+..|.+ +.++-.|+||+|||++.
T Consensus 571 Q~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 571 QDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETA 613 (852)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHH
Confidence 44444445455555545543 46888999999999986
No 262
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.02 E-value=1.6e+02 Score=30.93 Aligned_cols=61 Identities=10% Similarity=0.161 Sum_probs=37.3
Q ss_pred HhHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 415 ETICSLSFAKRARGIESNRELSEDLKKRREIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKK 479 (641)
Q Consensus 415 ETlsTLrFA~rar~I~~~~~~~~~~~~~~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~ 479 (641)
=++.++-++.............+.... +...|.++++.++++...|.++++.++..+...+
T Consensus 24 ~~~~~~l~~~~~a~~~q~~k~~~~~~~----r~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 24 ISLAMLLAGVMLAAVFQTSKGESVRRA----RDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHhhccCcchhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777666655544333322211 2226777777777777777777777777776655
No 263
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=39.78 E-value=21 Score=41.70 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=18.7
Q ss_pred HHHHhhcCcceeEEecccCCCCcceeec
Q 006540 166 ILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 166 lV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
.|.-++.-. ...+-.|+.|+|||||+.
T Consensus 193 Av~~~~~~k-~l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 193 AVSFAINNK-DLLIIHGPPGTGKTRTLV 219 (649)
T ss_pred HHHHHhccC-CceEeeCCCCCCceeeHH
Confidence 334444333 456678999999999983
No 264
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=39.68 E-value=19 Score=43.58 Aligned_cols=36 Identities=19% Similarity=0.422 Sum_probs=27.6
Q ss_pred hhhHhhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006540 157 EDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 157 ~eVf~~v~plV~~vl-~G~N~~IfAYGqTGSGKTyTM 192 (641)
-.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 67 PHIYSLAQTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 467765544444443 699999999999999999986
No 265
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=39.66 E-value=32 Score=36.90 Aligned_cols=28 Identities=36% Similarity=0.463 Sum_probs=21.6
Q ss_pred cceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHH
Q 006540 174 HNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFR 211 (641)
Q Consensus 174 ~N~~IfAYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~ 211 (641)
..+||++.|..|||||.-| +|...+|+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~----------QrL~~hl~~ 45 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFM----------QRLNSHLHA 45 (366)
T ss_pred CCcEEEEEecCCCCchhHH----------HHHHHHHhh
Confidence 4679999999999999765 455555554
No 266
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=39.62 E-value=1.3e+02 Score=31.65 Aligned_cols=42 Identities=14% Similarity=0.288 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006540 448 AELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSL 489 (641)
Q Consensus 448 ~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~~~~~l 489 (641)
.+|+.+|..++.|+..||-+++++..++++.++.-......+
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dl 98 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQI 98 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666665555555544444444333
No 267
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=39.37 E-value=13 Score=34.06 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=12.7
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
|+..|++|||||..-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999854
No 268
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=39.34 E-value=80 Score=37.94 Aligned_cols=13 Identities=38% Similarity=0.616 Sum_probs=9.2
Q ss_pred hHhhhhhhhhhhh
Q 006540 535 SRQRKNAAEKEIS 547 (641)
Q Consensus 535 s~~~~~~~e~e~~ 547 (641)
-++|+.++|.|+.
T Consensus 543 ~r~r~~~lE~E~~ 555 (697)
T PF09726_consen 543 CRQRRRQLESELK 555 (697)
T ss_pred HHHHHHHHHHHHH
Confidence 4667777777776
No 269
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=39.29 E-value=20 Score=33.82 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=16.2
Q ss_pred CcceeEEecccCCCCcceee
Q 006540 173 GHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 173 G~N~~IfAYGqTGSGKTyTM 192 (641)
+....|...|++|.||+..+
T Consensus 100 ~~~~~v~~~G~~nvGKStli 119 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSII 119 (157)
T ss_pred ccceEEEEEeCCCCChHHHH
Confidence 34567777999999999876
No 270
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=39.22 E-value=10 Score=45.54 Aligned_cols=19 Identities=37% Similarity=0.656 Sum_probs=15.8
Q ss_pred ceeEEecccCCCCcceeec
Q 006540 175 NVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM~ 193 (641)
|..++..|.||||||++|.
T Consensus 430 n~n~~I~G~tGsGKS~~~~ 448 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQ 448 (797)
T ss_pred ccceEEEcCCCCCHHHHHH
Confidence 4456888999999999983
No 271
>PRK05580 primosome assembly protein PriA; Validated
Probab=39.21 E-value=18 Score=43.12 Aligned_cols=37 Identities=22% Similarity=0.079 Sum_probs=23.5
Q ss_pred ecCCCCchhhHhhhHHHHHHhhcC-cceeEEecccCCCCcceeec
Q 006540 150 FNQAASQEDVFVEVEPILRSALDG-HNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 150 F~~~atQ~eVf~~v~plV~~vl~G-~N~~IfAYGqTGSGKTyTM~ 193 (641)
+.....|.++++.+ ++| ....++.+|+||||||.+..
T Consensus 143 ~~Lt~~Q~~ai~~i-------~~~~~~~~~Ll~~~TGSGKT~v~l 180 (679)
T PRK05580 143 PTLNPEQAAAVEAI-------RAAAGFSPFLLDGVTGSGKTEVYL 180 (679)
T ss_pred CCCCHHHHHHHHHH-------HhccCCCcEEEECCCCChHHHHHH
Confidence 34455566555543 222 23448899999999997753
No 272
>PTZ00110 helicase; Provisional
Probab=38.73 E-value=18 Score=41.97 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=20.6
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
...+..++.|.++ ++.++||||||.+.
T Consensus 158 ~~aip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 158 VQGWPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHHHHhcCCCE--EEEeCCCChHHHHH
Confidence 3456678899977 45679999999864
No 273
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=38.71 E-value=11 Score=36.18 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=14.1
Q ss_pred eEEecccCCCCcceee
Q 006540 177 CVLAYGQTGTGKTFTM 192 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM 192 (641)
.|+..|++|||||.++
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678899999999987
No 274
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=38.63 E-value=2.3e+02 Score=24.14 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006540 445 IRMAELEEDMREAEAECQNVRNQ 467 (641)
Q Consensus 445 ~~i~~L~~el~~l~~e~~~l~~q 467 (641)
.+++.+-..|..|+.++..|+.+
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 275
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=38.62 E-value=20 Score=42.23 Aligned_cols=43 Identities=23% Similarity=0.394 Sum_probs=30.1
Q ss_pred EEEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 143 EFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 143 ~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
.-+||.+++. ..... .++..+..++...++-||++|+|||+..
T Consensus 150 p~~~~~iiGq----s~~~~---~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 150 PRAFSEIVGQ----ERAIK---ALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred cCcHHhceeC----cHHHH---HHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 3467777653 33333 3455556678878889999999999876
No 276
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=38.60 E-value=23 Score=35.53 Aligned_cols=28 Identities=32% Similarity=0.488 Sum_probs=21.5
Q ss_pred HHHHHhhcCc---ceeEEecccCCCCcceee
Q 006540 165 PILRSALDGH---NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 165 plV~~vl~G~---N~~IfAYGqTGSGKTyTM 192 (641)
+-++.++.|- ...+..+|.+|||||...
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4567788543 556789999999999875
No 277
>CHL00176 ftsH cell division protein; Validated
Probab=38.54 E-value=16 Score=43.28 Aligned_cols=17 Identities=47% Similarity=0.575 Sum_probs=14.9
Q ss_pred eeEEecccCCCCcceee
Q 006540 176 VCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM 192 (641)
..|+-||++|+|||+..
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999986
No 278
>PRK11637 AmiB activator; Provisional
Probab=38.49 E-value=2.4e+02 Score=31.56 Aligned_cols=8 Identities=13% Similarity=-0.010 Sum_probs=4.1
Q ss_pred CCCCCCCc
Q 006540 602 GNGGLYSK 609 (641)
Q Consensus 602 ~~~~~~~~ 609 (641)
|+.|+|+.
T Consensus 328 ~~~Gi~i~ 335 (428)
T PRK11637 328 RWKGMVIG 335 (428)
T ss_pred CCCCEEee
Confidence 45555544
No 279
>PRK00295 hypothetical protein; Provisional
Probab=38.48 E-value=2.1e+02 Score=23.98 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006540 445 IRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSL 489 (641)
Q Consensus 445 ~~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~~~~~l 489 (641)
.++.+|+..+.-.++-+..|.+.+-.-+..+..+++.+..+...+
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl 49 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQ 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666666555555555555554444444
No 280
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=38.18 E-value=12 Score=39.75 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=19.1
Q ss_pred CcccceEEecCCCCCCHHHhHHHHHHHHHhhccccccc
Q 006540 397 GSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRE 434 (641)
Q Consensus 397 nskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~ 434 (641)
-++|++++| .+.+|. +++|.|+--...+..
T Consensus 185 l~kTivfVT-----HDidEA---~kLadri~vm~~G~i 214 (309)
T COG1125 185 LGKTIVFVT-----HDIDEA---LKLADRIAVMDAGEI 214 (309)
T ss_pred hCCEEEEEe-----cCHHHH---HhhhceEEEecCCeE
Confidence 357888887 556664 578888755544433
No 281
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=38.09 E-value=21 Score=38.23 Aligned_cols=35 Identities=29% Similarity=0.382 Sum_probs=22.5
Q ss_pred CchhhHhhhHHHHHHhhcCc-ceeEEecccCCCCcceee
Q 006540 155 SQEDVFVEVEPILRSALDGH-NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 155 tQ~eVf~~v~plV~~vl~G~-N~~IfAYGqTGSGKTyTM 192 (641)
.|+.+.+.+. ..+-.|. .-+++-||+.|+|||.+.
T Consensus 18 g~~~~~~~l~---~~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 18 GQEHIVQTLK---NAIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred CcHHHHHHHH---HHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 3444444433 3333453 456889999999999876
No 282
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=38.04 E-value=18 Score=39.76 Aligned_cols=53 Identities=30% Similarity=0.473 Sum_probs=35.7
Q ss_pred EEEEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHHHHHHHHH
Q 006540 142 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQ 212 (641)
Q Consensus 142 ~~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~ 212 (641)
..|.|+.|-+. +++= ..|+..+.+-.-+.|+.+|.+|||||+.+ |++.++...
T Consensus 12 ~~~pf~~ivGq----~~~k---~al~~~~~~p~~~~vli~G~~GtGKs~~a-----------r~~~~~l~~ 64 (350)
T CHL00081 12 PVFPFTAIVGQ----EEMK---LALILNVIDPKIGGVMIMGDRGTGKSTTI-----------RALVDLLPE 64 (350)
T ss_pred CCCCHHHHhCh----HHHH---HHHHHhccCCCCCeEEEEcCCCCCHHHHH-----------HHHHHHHhh
Confidence 46888877653 3221 45556666544456889999999999987 566666554
No 283
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=38.02 E-value=15 Score=35.31 Aligned_cols=15 Identities=47% Similarity=0.510 Sum_probs=13.0
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
++.+|++|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999865
No 284
>PRK00736 hypothetical protein; Provisional
Probab=37.86 E-value=2.1e+02 Score=23.90 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006540 445 IRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLE 490 (641)
Q Consensus 445 ~~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~~~~~l~ 490 (641)
.++.+|+..+.-.+.-+..|.+.+..-+..+..+.+.+..+...+.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677766666666666666666666666665555555554443
No 285
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=37.71 E-value=71 Score=40.08 Aligned_cols=120 Identities=18% Similarity=0.228 Sum_probs=64.1
Q ss_pred hhhhhHHHHHHHHHHHHHHhCCCCccCCCCccchhhhcccCCCcccceEEecCCCCCCHHHhHHHHHHHHHhhccccccc
Q 006540 355 GRAINLSLSALADVIAALRRKRGHVPYRNSKLTQILRDSLGDGSKVLMLVHASPCEEDVGETICSLSFAKRARGIESNRE 434 (641)
Q Consensus 355 ~~~INkSL~aLg~VI~aL~~~~~hIPYRdSKLT~LLqdsLgGnskT~mI~~VSP~~~~~~ETlsTLrFA~rar~I~~~~~ 434 (641)
+..|+.++..|.+|=.-|..-...| +.--+|+.+.-..+++.-.+ ....++....|+-|.+|..+-..+.
T Consensus 1517 ~~~I~e~v~sL~nVd~IL~~T~~di----~ra~~L~s~A~~a~~~A~~v------~~~ae~V~eaL~~Ad~Aq~~a~~ai 1586 (1758)
T KOG0994|consen 1517 TGEIQERVASLPNVDAILSRTKGDI----ARAENLQSEAERARSRAEDV------KGQAEDVVEALEEADVAQGEAQDAI 1586 (1758)
T ss_pred HHHHHHHHHhcccHHHHHHhhhhhH----HHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655554433222 12233444333322221110 1233455666777777765543332
Q ss_pred ccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 435 LSED-LKKRREIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSA 484 (641)
Q Consensus 435 ~~~~-~~~~~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~ 484 (641)
.-.+ .....+..+.+.++++.-.+.-+....+++.+++..+++++....+
T Consensus 1587 ~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~q 1637 (1758)
T KOG0994|consen 1587 QGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQ 1637 (1758)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2111 1122344566677777777777778888888888888877665533
No 286
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=37.69 E-value=13 Score=42.40 Aligned_cols=36 Identities=39% Similarity=0.654 Sum_probs=24.7
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeecCCCCCCCchhHH
Q 006540 165 PILRSALDGHNVCVLAYGQTGTGKTFTMDGTSDQPGIVPRA 205 (641)
Q Consensus 165 plV~~vl~G~N~~IfAYGqTGSGKTyTM~G~~~~~GIIpRa 205 (641)
-+.-.+..|.| +|.||+.|||||.... .-+||+|-.
T Consensus 190 AleiAAAGgHn--Ll~~GpPGtGKTmla~---Rl~~lLPpl 225 (490)
T COG0606 190 ALEIAAAGGHN--LLLVGPPGTGKTMLAS---RLPGLLPPL 225 (490)
T ss_pred HHHHHHhcCCc--EEEecCCCCchHHhhh---hhcccCCCC
Confidence 34444556666 4889999999998863 346777643
No 287
>PRK01172 ski2-like helicase; Provisional
Probab=37.65 E-value=20 Score=42.35 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=19.3
Q ss_pred HHHHHHhhcCcceeEEecccCCCCccee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFT 191 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyT 191 (641)
...+..+.+|.| ++..++||||||..
T Consensus 28 ~~ai~~l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 28 RMAIEQLRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred HHHHHHHhcCCc--EEEECCCCchHHHH
Confidence 344556678887 46668999999985
No 288
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=37.49 E-value=11 Score=40.44 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=15.1
Q ss_pred eeEEecccCCCCcceeec
Q 006540 176 VCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM~ 193 (641)
-+|+-.|.||||||.+|.
T Consensus 144 ~siii~G~t~sGKTt~ln 161 (312)
T COG0630 144 KSIIICGGTASGKTTLLN 161 (312)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 356778999999999984
No 289
>PRK08233 hypothetical protein; Provisional
Probab=37.45 E-value=14 Score=35.26 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=12.7
Q ss_pred eEEecccCCCCcceee
Q 006540 177 CVLAYGQTGTGKTFTM 192 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM 192 (641)
.|+--|++|||||+..
T Consensus 5 iI~I~G~~GsGKtTla 20 (182)
T PRK08233 5 IITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3555799999999865
No 290
>PRK04406 hypothetical protein; Provisional
Probab=37.32 E-value=2.7e+02 Score=23.87 Aligned_cols=46 Identities=13% Similarity=0.253 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006540 444 EIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSL 489 (641)
Q Consensus 444 ~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~~~~~l 489 (641)
+.++.+|+..+.-.+.-+..|.+.+-.-+..+..+++.+..+.+.+
T Consensus 10 e~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 10 EERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666665555556655555555555555555554444433
No 291
>CHL00181 cbbX CbbX; Provisional
Probab=37.27 E-value=14 Score=39.26 Aligned_cols=15 Identities=40% Similarity=0.461 Sum_probs=13.2
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
|+-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 677999999999876
No 292
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=37.25 E-value=22 Score=42.90 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=21.6
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
...+..+++|.|+.+.| +||||||...
T Consensus 42 ~~ai~~il~G~nvvv~a--pTGSGKTla~ 68 (742)
T TIGR03817 42 ARAAELAHAGRHVVVAT--GTASGKSLAY 68 (742)
T ss_pred HHHHHHHHCCCCEEEEC--CCCCcHHHHH
Confidence 45667789999976655 8999999874
No 293
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=37.23 E-value=19 Score=40.10 Aligned_cols=27 Identities=41% Similarity=0.528 Sum_probs=21.4
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
+..|-.++.|.++...| |||||||-+.
T Consensus 89 ~~aiP~~L~g~dvIglA--eTGSGKT~af 115 (476)
T KOG0330|consen 89 SEAIPVALGGRDVIGLA--ETGSGKTGAF 115 (476)
T ss_pred hhhcchhhCCCcEEEEe--ccCCCchhhh
Confidence 45566788999986655 9999999876
No 294
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=37.16 E-value=12 Score=46.06 Aligned_cols=20 Identities=40% Similarity=0.644 Sum_probs=17.2
Q ss_pred cceeEEecccCCCCcceeec
Q 006540 174 HNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 174 ~N~~IfAYGqTGSGKTyTM~ 193 (641)
-|.-.+..|+||||||++|.
T Consensus 474 ~n~n~~I~G~TGSGKS~l~~ 493 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATLT 493 (893)
T ss_pred CcccEEEECCCCCCHHHHHH
Confidence 47777888999999999983
No 295
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=37.11 E-value=42 Score=35.62 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=21.4
Q ss_pred HHHHHHhhcC---cceeEEecccCCCCcceee
Q 006540 164 EPILRSALDG---HNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl~G---~N~~IfAYGqTGSGKTyTM 192 (641)
..++-.+|.| ...++|.||..|+|||..+
T Consensus 62 ~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~ 93 (304)
T TIGR01613 62 QRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQ 93 (304)
T ss_pred HHHHhHHhcCCCCceEEEEEECCCCCcHHHHH
Confidence 4445555555 4567999999999999876
No 296
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=36.87 E-value=1.1e+02 Score=29.12 Aligned_cols=38 Identities=16% Similarity=0.410 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006540 449 ELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAAC 486 (641)
Q Consensus 449 ~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~~~ 486 (641)
.+...++.++.++..+...+..++..+++.++.+....
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~ 93 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAE 93 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666655555555544333
No 297
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=36.83 E-value=29 Score=41.28 Aligned_cols=36 Identities=42% Similarity=0.631 Sum_probs=27.8
Q ss_pred hhHhhhHHHHHHhh--cCcceeEEecccCCCCcceeec
Q 006540 158 DVFVEVEPILRSAL--DGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 158 eVf~~v~plV~~vl--~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
.-|.+|...+..++ +|--+|+..-|..|||||.|+.
T Consensus 403 ~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~ 440 (767)
T KOG1514|consen 403 NEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVL 440 (767)
T ss_pred HHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHH
Confidence 34555666666666 3677799999999999999985
No 298
>PRK06217 hypothetical protein; Validated
Probab=36.78 E-value=15 Score=35.91 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=12.9
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
|+-.|.+|||||+.-
T Consensus 4 I~i~G~~GsGKSTla 18 (183)
T PRK06217 4 IHITGASGSGTTTLG 18 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788899999999754
No 299
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=36.76 E-value=21 Score=42.56 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=26.8
Q ss_pred cCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 151 NQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 151 ~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
.+..-|..+..++ ....-.++..-++..|+||||||....
T Consensus 261 ~lt~~Q~~ai~~I---~~d~~~~~~~~~Ll~~~TGSGKT~va~ 300 (681)
T PRK10917 261 ELTGAQKRVVAEI---LADLASPKPMNRLLQGDVGSGKTVVAA 300 (681)
T ss_pred CCCHHHHHHHHHH---HHhhhccCCceEEEECCCCCcHHHHHH
Confidence 4566676666544 223334555678999999999998653
No 300
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.74 E-value=16 Score=42.11 Aligned_cols=36 Identities=33% Similarity=0.282 Sum_probs=23.0
Q ss_pred CchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 155 SQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 155 tQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
.|+.+...+...+.. ......++-||+.|+|||.+.
T Consensus 18 Gq~~v~~~L~~~i~~--~~l~ha~Lf~GppGtGKTTlA 53 (504)
T PRK14963 18 GQEHVKEVLLAALRQ--GRLGHAYLFSGPRGVGKTTTA 53 (504)
T ss_pred ChHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHH
Confidence 355665544444433 123345689999999999876
No 301
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=36.70 E-value=22 Score=41.25 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=28.2
Q ss_pred eEEecccCCCCcceeecC---C---CCCCCchhHHHHHHHHHHh
Q 006540 177 CVLAYGQTGTGKTFTMDG---T---SDQPGIVPRALEELFRQAA 214 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM~G---~---~~~~GIIpRal~~LF~~~~ 214 (641)
.||..|+|.|||||--.- . +--.|=+-..+.++|++.+
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~n 236 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLN 236 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhh
Confidence 499999999999998632 1 1234777778888998653
No 302
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=36.70 E-value=28 Score=35.84 Aligned_cols=30 Identities=30% Similarity=0.293 Sum_probs=23.0
Q ss_pred hHHHHHHhhc--CcceeEEecccCCCCcceee
Q 006540 163 VEPILRSALD--GHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 163 v~plV~~vl~--G~N~~IfAYGqTGSGKTyTM 192 (641)
+..+++...+ .-...|.-+|..|.|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 4556666666 66778899999999999754
No 303
>PRK14531 adenylate kinase; Provisional
Probab=36.51 E-value=15 Score=35.85 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=13.6
Q ss_pred eEEecccCCCCcceee
Q 006540 177 CVLAYGQTGTGKTFTM 192 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM 192 (641)
-|+.+|+.|||||+.-
T Consensus 4 ~i~i~G~pGsGKsT~~ 19 (183)
T PRK14531 4 RLLFLGPPGAGKGTQA 19 (183)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999863
No 304
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=36.33 E-value=15 Score=42.17 Aligned_cols=46 Identities=24% Similarity=0.369 Sum_probs=30.4
Q ss_pred EEEEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 142 KEFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 142 ~~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
..+.||.+++.+..-..+.+.+ .. +...+.-|+-+|.+||||++..
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~----~~-~A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQA----RK-LAMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred ccccccceeECCHHHHHHHHHH----HH-HhCCCCCEEEECCCCccHHHHH
Confidence 4578888887654333333332 22 2335777999999999999765
No 305
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=36.31 E-value=25 Score=35.88 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=19.8
Q ss_pred HHHHhhc-C--cceeEEecccCCCCccee
Q 006540 166 ILRSALD-G--HNVCVLAYGQTGTGKTFT 191 (641)
Q Consensus 166 lV~~vl~-G--~N~~IfAYGqTGSGKTyT 191 (641)
-++.++. | ...+++.+|++|||||..
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~l 37 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIF 37 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHH
Confidence 4566665 4 367788999999999963
No 306
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=36.28 E-value=22 Score=43.69 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=21.3
Q ss_pred eeEEecccCCCCccee-------ecCCCCCCCchhHHHHHHH
Q 006540 176 VCVLAYGQTGTGKTFT-------MDGTSDQPGIVPRALEELF 210 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyT-------M~G~~~~~GIIpRal~~LF 210 (641)
...+-+|+||||||.- +||.....| +....++.
T Consensus 26 gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~--~~~~~~~i 65 (908)
T COG0419 26 GIFLIVGPNGAGKSSILDAITFALYGKTPRLG--AFSLDDLI 65 (908)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHcCCCCCcc--chhhhHHH
Confidence 3446679999999865 477665545 34444444
No 307
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=36.20 E-value=13 Score=39.29 Aligned_cols=16 Identities=38% Similarity=0.416 Sum_probs=13.7
Q ss_pred eEEecccCCCCcceee
Q 006540 177 CVLAYGQTGTGKTFTM 192 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM 192 (641)
-++-+|++|+|||+..
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 3788899999999875
No 308
>PHA02624 large T antigen; Provisional
Probab=36.18 E-value=25 Score=41.42 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=21.7
Q ss_pred HHHHhhcCcce--eEEecccCCCCcceee
Q 006540 166 ILRSALDGHNV--CVLAYGQTGTGKTFTM 192 (641)
Q Consensus 166 lV~~vl~G~N~--~IfAYGqTGSGKTyTM 192 (641)
++..++.|..- ||+-||+.|||||+-.
T Consensus 420 ~lk~~l~giPKk~~il~~GPpnTGKTtf~ 448 (647)
T PHA02624 420 ILKLIVENVPKRRYWLFKGPVNSGKTTLA 448 (647)
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 46667777655 9999999999999754
No 309
>PRK02119 hypothetical protein; Provisional
Probab=36.01 E-value=2.3e+02 Score=24.07 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006540 445 IRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSL 489 (641)
Q Consensus 445 ~~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~~~~~l 489 (641)
.++.+|+..+.-.++-+..|.+.+-.-+..+..+++.+..+.+.+
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666555555555555555554444444
No 310
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=35.98 E-value=29 Score=33.88 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=21.6
Q ss_pred CCCCCeEecCcEEEEcCChHHHHHHHHHhhh
Q 006540 261 DAKGTVEIEGLTEVQIPDFTKARWWYNKGRR 291 (641)
Q Consensus 261 d~~g~v~V~glt~v~V~s~~e~~~ll~~g~~ 291 (641)
...|.+++.++...+...-..++++|+.+.-
T Consensus 92 A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~ 122 (168)
T PF00158_consen 92 ANGGTLFLDEIEDLPPELQAKLLRVLEEGKF 122 (168)
T ss_dssp TTTSEEEEETGGGS-HHHHHHHHHHHHHSEE
T ss_pred ccceEEeecchhhhHHHHHHHHHHHHhhchh
Confidence 3467778888888777777777788876643
No 311
>PRK10867 signal recognition particle protein; Provisional
Probab=35.94 E-value=29 Score=39.27 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=15.6
Q ss_pred ceeEEecccCCCCcceee
Q 006540 175 NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM 192 (641)
...|+..|.+|||||.|.
T Consensus 100 p~vI~~vG~~GsGKTTta 117 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTA 117 (433)
T ss_pred CEEEEEECCCCCcHHHHH
Confidence 456788899999999997
No 312
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=35.76 E-value=21 Score=37.63 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=21.2
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
..+|...=..-+.+|.-+|+=|||||+.|
T Consensus 9 a~~I~~~~~~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 9 AEIIKNPDSDDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred HHHHhccCCCCCeEEEEECCCCCCHHHHH
Confidence 33443332356888999999999999976
No 313
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=35.59 E-value=13 Score=36.66 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=12.6
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
|.-.|++|||||++-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999865
No 314
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=35.41 E-value=24 Score=44.92 Aligned_cols=33 Identities=33% Similarity=0.542 Sum_probs=20.4
Q ss_pred hhHhhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 158 DVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 158 eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
-||..-..++.. +.+.. .++..|+||||||.-+
T Consensus 74 Pi~~~r~~Il~a-i~~~~-VviI~GeTGSGKTTql 106 (1294)
T PRK11131 74 PVSQKKQDILEA-IRDHQ-VVIVAGETGSGKTTQL 106 (1294)
T ss_pred CHHHHHHHHHHH-HHhCC-eEEEECCCCCCHHHHH
Confidence 345433334443 44444 4666799999999865
No 315
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=35.33 E-value=4e+02 Score=28.78 Aligned_cols=64 Identities=16% Similarity=0.183 Sum_probs=36.6
Q ss_pred CcccceEEecCCCCCC-HHHhHHH----HHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 397 GSKVLMLVHASPCEED-VGETICS----LSFAKRARGIESNRELSEDLKKRREIRMAELEEDMREAEAE 460 (641)
Q Consensus 397 nskT~mI~~VSP~~~~-~~ETlsT----LrFA~rar~I~~~~~~~~~~~~~~~~~i~~L~~el~~l~~e 460 (641)
..+++.|...=|...+ ++....- +.++..+.+++..+....-..+.+++..+++.++..+.++|
T Consensus 213 ~~~~l~~~~~lp~~~~~~~~~~~l~~~v~~l~D~~~~~~l~~e~~~K~~k~R~~~~~~~~K~~~~~r~E 281 (321)
T PF07946_consen 213 PKKRLIFSFRLPSSSDDMEALEPLLKLVFYLIDKLARFKLSPEAKKKAKKNREEEEEKILKEAHQERQE 281 (321)
T ss_pred cCcEEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhheeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666655566555 5544443 45667777777666665555565655555555554444444
No 316
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=35.25 E-value=1.5e+02 Score=29.11 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=31.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q 006540 56 NVVPEQQKNELEQSIINLEGEIVELRLKKRRLD----EKRREA 94 (641)
Q Consensus 56 ~~~~e~~~~el~~~i~~l~~e~~~l~~~~~~~e----~~Rr~l 94 (641)
..+-|.++.+|..++.+++.||..|+.-|...+ ..+|+|
T Consensus 24 ~~LsEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 24 EGLSEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 456699999999999999999999998775544 345555
No 317
>PRK04325 hypothetical protein; Provisional
Probab=35.24 E-value=2.4e+02 Score=24.01 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006540 445 IRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSL 489 (641)
Q Consensus 445 ~~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~~~~~l 489 (641)
.++.+|+..+.-.+.-+..|.+.+-.-+..+..+++.+..+...+
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666666555555555555554444444
No 318
>PRK02793 phi X174 lysis protein; Provisional
Probab=35.12 E-value=2.4e+02 Score=23.83 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006540 445 IRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSL 489 (641)
Q Consensus 445 ~~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~~~~~l 489 (641)
.++.+|+..+.-.++-+..|.+-+-.-+..+..+++.+..+...+
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666555555555555555554444444
No 319
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=35.11 E-value=26 Score=34.84 Aligned_cols=28 Identities=36% Similarity=0.436 Sum_probs=20.7
Q ss_pred HHHHHhhc-Cc--ceeEEecccCCCCcceee
Q 006540 165 PILRSALD-GH--NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 165 plV~~vl~-G~--N~~IfAYGqTGSGKTyTM 192 (641)
+-++.++. |+ ...+..+|++|||||...
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHH
Confidence 34677775 44 344789999999999875
No 320
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=35.06 E-value=13 Score=36.44 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=12.8
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
|.--|++|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999987
No 321
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.06 E-value=14 Score=41.20 Aligned_cols=18 Identities=44% Similarity=0.499 Sum_probs=15.3
Q ss_pred eeEEecccCCCCcceeec
Q 006540 176 VCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM~ 193 (641)
-.|+-.|++|+|||+|+.
T Consensus 207 ~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLV 224 (407)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 456788999999999984
No 322
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=34.85 E-value=18 Score=31.87 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=13.1
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
|+..|..|+|||..+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 678899999999865
No 323
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=34.60 E-value=1.4e+02 Score=26.74 Aligned_cols=31 Identities=16% Similarity=0.438 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 446 RMAELEEDMREAEAECQNVRNQIKEVESLLS 476 (641)
Q Consensus 446 ~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~ 476 (641)
++..++.++..++..+..+..++.+++..+.
T Consensus 71 ~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 71 RLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444333
No 324
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=34.50 E-value=17 Score=34.34 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=13.5
Q ss_pred eEEecccCCCCcceee
Q 006540 177 CVLAYGQTGTGKTFTM 192 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM 192 (641)
.|.-+|+.|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999765
No 325
>PHA01747 putative ATP-dependent protease
Probab=34.43 E-value=16 Score=40.49 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=25.9
Q ss_pred hHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 163 VEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 163 v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
+-|+|++...+-|.-++=.|+.|+||||+.
T Consensus 178 LiPlVE~~~~~~NyNliELgPRGTGKS~~f 207 (425)
T PHA01747 178 LLPLFTSPVSKRPVHIIELSNRGTGKTTTF 207 (425)
T ss_pred hhhheeccCCCCCeeEEEecCCCCChhhHH
Confidence 357888777888999999999999999986
No 326
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=34.40 E-value=89 Score=36.38 Aligned_cols=10 Identities=40% Similarity=0.650 Sum_probs=6.0
Q ss_pred EEEecCCCcc
Q 006540 332 WMVDLGGSER 341 (641)
Q Consensus 332 ~lVDLAGSEr 341 (641)
..+|+.|+-+
T Consensus 5 ~~l~~gG~gn 14 (907)
T KOG2264|consen 5 MALKLGGSGN 14 (907)
T ss_pred eeeecCCCCC
Confidence 3456666665
No 327
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=34.34 E-value=18 Score=38.79 Aligned_cols=45 Identities=22% Similarity=0.434 Sum_probs=28.3
Q ss_pred eEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCC
Q 006540 177 CVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKP 243 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~V~DLL~~~~ 243 (641)
.|+-.|+||||||-.- ++ | .... .--|++-.++||.+ .|....++
T Consensus 6 ii~I~GpTasGKS~LA-------------l~-L----A~~~--~eIIsaDS~QvYr~--ldIgTaKp 50 (300)
T PRK14729 6 IVFIFGPTAVGKSNIL-------------FH-F----PKGK--AEIINVDSIQVYKE--FDIASCKP 50 (300)
T ss_pred EEEEECCCccCHHHHH-------------HH-H----HHhC--CcEEeccHHHHHCC--CceecCCC
Confidence 6888999999999732 11 1 1111 13577888899975 35554443
No 328
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=34.30 E-value=15 Score=30.32 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=12.6
Q ss_pred EEecccCCCCcceeec
Q 006540 178 VLAYGQTGTGKTFTMD 193 (641)
Q Consensus 178 IfAYGqTGSGKTyTM~ 193 (641)
++.+|..|+|||.+..
T Consensus 2 ~~~~g~~G~Gktt~~~ 17 (99)
T cd01983 2 IVVTGKGGVGKTTLAA 17 (99)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4567888999999863
No 329
>PRK14532 adenylate kinase; Provisional
Probab=34.26 E-value=18 Score=35.14 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=13.5
Q ss_pred eEEecccCCCCcceee
Q 006540 177 CVLAYGQTGTGKTFTM 192 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM 192 (641)
.|+..|..|||||+.-
T Consensus 2 ~i~~~G~pGsGKsT~a 17 (188)
T PRK14532 2 NLILFGPPAAGKGTQA 17 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999763
No 330
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=34.21 E-value=17 Score=34.83 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=13.6
Q ss_pred eEEecccCCCCcceee
Q 006540 177 CVLAYGQTGTGKTFTM 192 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM 192 (641)
.|+..|+.|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677999999999876
No 331
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=34.03 E-value=30 Score=35.03 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=15.8
Q ss_pred CcceeEEecccCCCCcceee
Q 006540 173 GHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 173 G~N~~IfAYGqTGSGKTyTM 192 (641)
+....|.-.|++|||||+.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred CCCEEEEEECCCCCCHHHHH
Confidence 45556667799999999876
No 332
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=34.03 E-value=28 Score=38.25 Aligned_cols=73 Identities=27% Similarity=0.348 Sum_probs=45.8
Q ss_pred CCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceeecCC-------CC------CCCchhH---HHHHHHHHHhcCC
Q 006540 154 ASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTMDGT-------SD------QPGIVPR---ALEELFRQAALDN 217 (641)
Q Consensus 154 atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~G~-------~~------~~GIIpR---al~~LF~~~~~~~ 217 (641)
..|..++.-++ +.++.|-.-.++-.|+.|||||+-+--- ++ =.|.+.- |+..|-.+++.+.
T Consensus 31 ~~~~~l~~~lk---qt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~ 107 (408)
T KOG2228|consen 31 DEQKHLSELLK---QTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALEL 107 (408)
T ss_pred HHHHHHHHHHH---HHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHH
Confidence 34444444332 4567898888899999999999987321 11 1366666 7777776665544
Q ss_pred CceEEEEEeEEE
Q 006540 218 SSSVTFSMSMLE 229 (641)
Q Consensus 218 ~~~~~v~vS~lE 229 (641)
.....+..||-|
T Consensus 108 ~~~~k~~gsfte 119 (408)
T KOG2228|consen 108 NRIVKSFGSFTE 119 (408)
T ss_pred hhhheeecccch
Confidence 444445555555
No 333
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.90 E-value=25 Score=38.45 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=15.7
Q ss_pred cceeEEecccCCCCcceee
Q 006540 174 HNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 174 ~N~~IfAYGqTGSGKTyTM 192 (641)
..-+++-||+.|+|||.+.
T Consensus 37 ~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 37 IHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred CCeEEEEecCCCCCHHHHH
Confidence 3456789999999999876
No 334
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=33.80 E-value=2e+02 Score=23.40 Aligned_cols=37 Identities=11% Similarity=0.380 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 446 RMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLF 482 (641)
Q Consensus 446 ~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~ 482 (641)
.+..+...+..++.+++.+++.++++++-....=.++
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666666655555554433333
No 335
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=33.55 E-value=20 Score=38.13 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=23.6
Q ss_pred CCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 46 PPLPLICTDVNVVPEQQKNELEQSIINLEGEIVELRLKKR 85 (641)
Q Consensus 46 ~~~~~~~~~~~~~~e~~~~el~~~i~~l~~e~~~l~~~~~ 85 (641)
|..|..--|..+++.-...-....|.+.+.++.++..++.
T Consensus 23 ~~~~l~e~di~~lk~yg~~pya~~ik~~e~di~~l~~ki~ 62 (435)
T KOG0729|consen 23 PINPLDEGDIALLKSYGQGPYAAQIKKVEADIEDLLKKIN 62 (435)
T ss_pred CCCccchhhHHHHHHhCCChhHHHHHHHHHHHHHHHHHHH
Confidence 4444555577777666555555566666666666655543
No 336
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=33.46 E-value=2.7e+02 Score=26.63 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 450 LEEDMREAEAECQNVRNQIKEVESLLSE 477 (641)
Q Consensus 450 L~~el~~l~~e~~~l~~qi~~~e~~~~E 477 (641)
++.+....+.++..|...+..++..++.
T Consensus 26 le~~~~~~E~EI~sL~~K~~~lE~eld~ 53 (143)
T PF12718_consen 26 LEQENEQKEQEITSLQKKNQQLEEELDK 53 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 337
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=33.41 E-value=23 Score=39.11 Aligned_cols=17 Identities=35% Similarity=0.755 Sum_probs=0.0
Q ss_pred CcceeEEecccCCCCcc
Q 006540 173 GHNVCVLAYGQTGTGKT 189 (641)
Q Consensus 173 G~N~~IfAYGqTGSGKT 189 (641)
|+.-+||+.|+.|+|||
T Consensus 21 Gi~f~im~~G~sG~GKt 37 (373)
T COG5019 21 GIDFTIMVVGESGLGKT 37 (373)
T ss_pred CCceEEEEecCCCCchh
No 338
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=33.40 E-value=13 Score=41.06 Aligned_cols=18 Identities=39% Similarity=0.589 Sum_probs=13.0
Q ss_pred eeEEecccCCCCcceeec
Q 006540 176 VCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM~ 193 (641)
--++..|.||||||.+|.
T Consensus 16 ~~~li~G~~GsGKT~~i~ 33 (386)
T PF10412_consen 16 RHILIIGATGSGKTQAIR 33 (386)
T ss_dssp G-EEEEE-TTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 346888999999998663
No 339
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=33.34 E-value=16 Score=41.19 Aligned_cols=18 Identities=39% Similarity=0.379 Sum_probs=15.7
Q ss_pred ceeEEecccCCCCcceee
Q 006540 175 NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM 192 (641)
...|...|++|+|||.|+
T Consensus 191 g~vi~lvGpnG~GKTTtl 208 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTT 208 (420)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356788899999999998
No 340
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=33.30 E-value=18 Score=39.12 Aligned_cols=73 Identities=25% Similarity=0.379 Sum_probs=44.4
Q ss_pred EeceeecCCCCchhhHhhh-HHH-HHHhhcCc---ceeEEecccCCCCcceeecC-----------CC------CCCCch
Q 006540 145 GFDKVFNQAASQEDVFVEV-EPI-LRSALDGH---NVCVLAYGQTGTGKTFTMDG-----------TS------DQPGIV 202 (641)
Q Consensus 145 ~FD~VF~~~atQ~eVf~~v-~pl-V~~vl~G~---N~~IfAYGqTGSGKTyTM~G-----------~~------~~~GII 202 (641)
.++-|-+-+..-+.+-+.| -|+ .-.+|.|. -..|+-||+.|+||+|.--. -. ..-|=-
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGES 210 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 210 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccH
Confidence 4455555444434444433 342 34556664 36799999999999996421 11 123777
Q ss_pred hHHHHHHHHHHhcCC
Q 006540 203 PRALEELFRQAALDN 217 (641)
Q Consensus 203 pRal~~LF~~~~~~~ 217 (641)
.+.+..||+...+..
T Consensus 211 EkLVknLFemARe~k 225 (439)
T KOG0739|consen 211 EKLVKNLFEMARENK 225 (439)
T ss_pred HHHHHHHHHHHHhcC
Confidence 788999998765544
No 341
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=33.29 E-value=18 Score=37.62 Aligned_cols=40 Identities=23% Similarity=0.235 Sum_probs=24.8
Q ss_pred cCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 151 NQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 151 ~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
.++++|....+....+-+. .-....|+..|.||+|||.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~--~~~~~~IllvG~tGvGKSSli 48 (249)
T cd01853 9 FPDAAQTKALELEAKGKEE--LDFSLTILVLGKTGVGKSSTI 48 (249)
T ss_pred CcHHHHHHHHHHHHHhhhh--ccCCeEEEEECCCCCcHHHHH
Confidence 3455555444333333322 345567888999999999886
No 342
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=33.28 E-value=1.5e+02 Score=24.46 Aligned_cols=30 Identities=33% Similarity=0.385 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 62 QKNELEQSIINLEGEIVELRLKKRRLDEKR 91 (641)
Q Consensus 62 ~~~el~~~i~~l~~e~~~l~~~~~~~e~~R 91 (641)
...+|+++|..|+.||..++..+......|
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~~~~~K~a~r 51 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEAAIAKKSASR 51 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999988775554443
No 343
>PTZ00014 myosin-A; Provisional
Probab=33.24 E-value=31 Score=42.15 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=27.0
Q ss_pred hhhHhhhHHHHHHhh-cCcceeEEecccCCCCcceee
Q 006540 157 EDVFVEVEPILRSAL-DGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 157 ~eVf~~v~plV~~vl-~G~N~~IfAYGqTGSGKTyTM 192 (641)
-.||.-........+ .|.|-||+.-|.+|||||.+.
T Consensus 164 PHifavA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 164 PHVFTTARRALENLHGVKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 447765544444444 689999999999999999764
No 344
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=33.17 E-value=1.8e+02 Score=30.72 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 438 DLKKRREIRMAELEEDMREAEAECQNVRNQIKEVE 472 (641)
Q Consensus 438 ~~~~~~~~~i~~L~~el~~l~~e~~~l~~qi~~~e 472 (641)
++.+..+.++..++...+.++.+++.|+-+.....
T Consensus 45 E~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~K 79 (333)
T KOG1853|consen 45 EIEAELESQLDQLETRNRDLETRNQRLTTEQERNK 79 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666666666666666654443333
No 345
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=33.14 E-value=1.3e+02 Score=31.57 Aligned_cols=45 Identities=9% Similarity=0.113 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006540 443 REIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQ 487 (641)
Q Consensus 443 ~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~~~~ 487 (641)
.+.++..|+.++.+|+.+++.+..+++.+++...+....+.....
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788999999999999999999888888877776666655443
No 346
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=33.05 E-value=30 Score=42.33 Aligned_cols=42 Identities=29% Similarity=0.367 Sum_probs=27.7
Q ss_pred ceeecCCCCchhhHhhhHHHHHHhhcCc------ceeEEecccCCCCcceee
Q 006540 147 DKVFNQAASQEDVFVEVEPILRSALDGH------NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 147 D~VF~~~atQ~eVf~~v~plV~~vl~G~------N~~IfAYGqTGSGKTyTM 192 (641)
.+|++ |...-..|...|..+..|. .+.++-+|++|+|||++.
T Consensus 565 ~~v~G----Q~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA 612 (852)
T TIGR03346 565 ERVVG----QDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELA 612 (852)
T ss_pred cccCC----ChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHH
Confidence 34554 4555555555555555553 356778899999999876
No 347
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=33.04 E-value=21 Score=42.41 Aligned_cols=44 Identities=23% Similarity=0.382 Sum_probs=26.6
Q ss_pred EEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 144 FGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 144 F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
+.|+.+++.+..-..+.+ .+.. +...+..|+-+|.+|||||+.-
T Consensus 373 ~~~~~liG~S~~~~~~~~----~~~~-~a~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLK----QVEM-VAQSDSTVLILGETGTGKELIA 416 (686)
T ss_pred ccccceeecCHHHHHHHH----HHHH-HhCCCCCEEEECCCCcCHHHHH
Confidence 456656554433333332 2232 2356778999999999999843
No 348
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=32.97 E-value=15 Score=32.72 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=13.5
Q ss_pred eEEecccCCCCcceee
Q 006540 177 CVLAYGQTGTGKTFTM 192 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM 192 (641)
-|..+|.+|||||..|
T Consensus 3 ki~~~G~~~~GKstl~ 18 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999999876
No 349
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=32.96 E-value=17 Score=33.26 Aligned_cols=16 Identities=44% Similarity=0.503 Sum_probs=13.5
Q ss_pred eEEecccCCCCcceee
Q 006540 177 CVLAYGQTGTGKTFTM 192 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM 192 (641)
.+.-.|++|||||.++
T Consensus 17 ~v~I~GpSGsGKSTLl 32 (107)
T cd00820 17 GVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4566799999999987
No 350
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=32.86 E-value=32 Score=34.22 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=21.2
Q ss_pred HHHHHhhcC-c--ceeEEecccCCCCcceee
Q 006540 165 PILRSALDG-H--NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 165 plV~~vl~G-~--N~~IfAYGqTGSGKTyTM 192 (641)
+-++.++.| + ...+.-+|++|+|||..+
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~ 36 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLC 36 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHH
Confidence 456777754 3 456778899999999876
No 351
>CHL00195 ycf46 Ycf46; Provisional
Probab=32.85 E-value=16 Score=41.87 Aligned_cols=18 Identities=39% Similarity=0.510 Sum_probs=15.4
Q ss_pred ceeEEecccCCCCcceee
Q 006540 175 NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM 192 (641)
.-.|+-||+.|+|||++.
T Consensus 259 pkGILL~GPpGTGKTllA 276 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTA 276 (489)
T ss_pred CceEEEECCCCCcHHHHH
Confidence 346999999999999875
No 352
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=32.69 E-value=2.5e+02 Score=26.59 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006540 443 REIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLE 490 (641)
Q Consensus 443 ~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~~~~~l~ 490 (641)
.++.+...++-|+-++.|++.|++-+-.+++..+|-++.+..+...+.
T Consensus 76 heKvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~ 123 (126)
T PF13118_consen 76 HEKVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLK 123 (126)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345566778889999999999999999999999998888877666554
No 353
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.62 E-value=23 Score=41.84 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=25.4
Q ss_pred EeceeecCCCCchhhHhhhHHHHHHhhcCc-ceeEEecccCCCCcceee
Q 006540 145 GFDKVFNQAASQEDVFVEVEPILRSALDGH-NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 145 ~FD~VF~~~atQ~eVf~~v~plV~~vl~G~-N~~IfAYGqTGSGKTyTM 192 (641)
+||.|.+ |+.+...+..+ +-.|. .-.++-||+.|+|||++.
T Consensus 14 ~f~dviG----Qe~vv~~L~~~---l~~~rl~ha~Lf~Gp~GvGKTtlA 55 (618)
T PRK14951 14 SFSEMVG----QEHVVQALTNA---LTQQRLHHAYLFTGTRGVGKTTVS 55 (618)
T ss_pred CHHHhcC----cHHHHHHHHHH---HHcCCCCeEEEEECCCCCCHHHHH
Confidence 4666653 55554433332 22333 346788999999999986
No 354
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=32.57 E-value=2.4e+02 Score=29.56 Aligned_cols=32 Identities=22% Similarity=0.478 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 440 KKRREIRMAELEEDMREAEAECQNVRNQIKEV 471 (641)
Q Consensus 440 ~~~~~~~i~~L~~el~~l~~e~~~l~~qi~~~ 471 (641)
.+++..++.+++.+|++|.+|.+.|+.+.+.+
T Consensus 85 RDrKKaRm~eme~~i~dL~een~~L~~en~~L 116 (292)
T KOG4005|consen 85 RDRKKARMEEMEYEIKDLTEENEILQNENDSL 116 (292)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567777777777777666666554433
No 355
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=32.40 E-value=1.6e+02 Score=35.83 Aligned_cols=57 Identities=21% Similarity=0.179 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Q 006540 437 EDLKKRREIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLEDEE 493 (641)
Q Consensus 437 ~~~~~~~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~~~~~l~~e~ 493 (641)
+|-.+..+.+|..|+....+++-+.+.|++-+..+|..+.|.+-.++.....+..++
T Consensus 98 Eddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le 154 (1265)
T KOG0976|consen 98 EDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLE 154 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344444555666676666666666666666666666666666666655555544444
No 356
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=32.31 E-value=32 Score=38.83 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=16.1
Q ss_pred ceeEEecccCCCCcceee
Q 006540 175 NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM 192 (641)
...|+-.|.+|+|||.|.
T Consensus 100 ~~vi~lvG~~GvGKTTta 117 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTC 117 (429)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467889999999999998
No 357
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=32.30 E-value=33 Score=35.33 Aligned_cols=45 Identities=22% Similarity=0.174 Sum_probs=31.1
Q ss_pred eeEEecccCCCCcceee------cCCC-----CCCCchhHHHHHHHHHHhcCCCce
Q 006540 176 VCVLAYGQTGTGKTFTM------DGTS-----DQPGIVPRALEELFRQAALDNSSS 220 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM------~G~~-----~~~GIIpRal~~LF~~~~~~~~~~ 220 (641)
-+-..+|++|+|||.|+ +|-. -.+++=..++..||.-+.+.+.|-
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~ 88 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWL 88 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EE
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchh
Confidence 34456999999999997 4432 456888888999998766665553
No 358
>PRK00300 gmk guanylate kinase; Provisional
Probab=32.05 E-value=17 Score=35.72 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=13.9
Q ss_pred eeEEecccCCCCcceee
Q 006540 176 VCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM 192 (641)
..|.-.|++|||||..+
T Consensus 6 ~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45778899999999655
No 359
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=32.01 E-value=92 Score=26.92 Aligned_cols=29 Identities=24% Similarity=0.504 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 454 MREAEAECQNVRNQIKEVESLLSEKKKLF 482 (641)
Q Consensus 454 l~~l~~e~~~l~~qi~~~e~~~~E~~~~~ 482 (641)
|.++.+|+..|+.+|++++.++++..+.+
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~~ 30 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKREF 30 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34566777778888887877777766554
No 360
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=31.98 E-value=13 Score=37.75 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=11.3
Q ss_pred ecccCCCCcceee
Q 006540 180 AYGQTGTGKTFTM 192 (641)
Q Consensus 180 AYGqTGSGKTyTM 192 (641)
--|++|||||+++
T Consensus 4 I~G~sGSGKTTla 16 (220)
T cd02025 4 IAGSVAVGKSTTA 16 (220)
T ss_pred eeCCCCCCHHHHH
Confidence 3499999999987
No 361
>PRK04040 adenylate kinase; Provisional
Probab=31.81 E-value=19 Score=35.69 Aligned_cols=16 Identities=38% Similarity=0.586 Sum_probs=14.0
Q ss_pred eEEecccCCCCcceee
Q 006540 177 CVLAYGQTGTGKTFTM 192 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM 192 (641)
.|+.+|..|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4788999999999866
No 362
>PRK06851 hypothetical protein; Provisional
Probab=31.74 E-value=31 Score=38.20 Aligned_cols=41 Identities=27% Similarity=0.466 Sum_probs=28.8
Q ss_pred eeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 148 KVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 148 ~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
+.|....|-.-+| .+.+++++|.+-.++-.|.+|+|||++|
T Consensus 7 ~~f~ggnT~~Gf~----s~~~~~~~~~~~~~il~G~pGtGKStl~ 47 (367)
T PRK06851 7 HYFAGGNTARGFY----SLYDSIIDGANRIFILKGGPGTGKSTLM 47 (367)
T ss_pred eeecCCCCCCchh----hhhhhhccccceEEEEECCCCCCHHHHH
Confidence 3454444434444 3455566788888999999999999988
No 363
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=31.58 E-value=17 Score=43.58 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=16.1
Q ss_pred ceeEEecccCCCCcceee
Q 006540 175 NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM 192 (641)
|.-++..|+||||||++|
T Consensus 434 ~~n~~I~G~tGsGKS~~~ 451 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLL 451 (785)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 667788999999999998
No 364
>PRK06762 hypothetical protein; Provisional
Probab=31.45 E-value=21 Score=33.85 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=12.3
Q ss_pred eEEecccCCCCccee
Q 006540 177 CVLAYGQTGTGKTFT 191 (641)
Q Consensus 177 ~IfAYGqTGSGKTyT 191 (641)
+|.-.|..|||||+.
T Consensus 4 li~i~G~~GsGKST~ 18 (166)
T PRK06762 4 LIIIRGNSGSGKTTI 18 (166)
T ss_pred EEEEECCCCCCHHHH
Confidence 566789999999874
No 365
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=31.32 E-value=2.2e+02 Score=30.52 Aligned_cols=9 Identities=22% Similarity=0.564 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 006540 460 ECQNVRNQI 468 (641)
Q Consensus 460 e~~~l~~qi 468 (641)
||.+|+.|+
T Consensus 90 EI~eLksQL 98 (305)
T PF15290_consen 90 EIDELKSQL 98 (305)
T ss_pred HHHHHHHHH
Confidence 333333333
No 366
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=31.12 E-value=33 Score=33.13 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=22.5
Q ss_pred HHHHHhhc-CcceeEEecccCCCCcceee
Q 006540 165 PILRSALD-GHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 165 plV~~vl~-G~N~~IfAYGqTGSGKTyTM 192 (641)
.++..+.. .....|+..|..|||||..+
T Consensus 3 ~~~~~~~~~~~~~~ililGl~~sGKTtll 31 (175)
T PF00025_consen 3 SVLSKLKSKKKEIKILILGLDGSGKTTLL 31 (175)
T ss_dssp HHHHHCTTTTSEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcccCcEEEEEEECCCccchHHHH
Confidence 45666665 78889999999999999644
No 367
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=31.10 E-value=1.1e+02 Score=30.37 Aligned_cols=33 Identities=36% Similarity=0.432 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 450 LEEDMREAEAECQNVRNQIKEVESLLSEKKKLF 482 (641)
Q Consensus 450 L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~ 482 (641)
....|..++.++..|+..+..++..+.++.+.+
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443
No 368
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=31.09 E-value=32 Score=41.99 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=18.5
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
..+++.+ .. |..++..|+||||||..+
T Consensus 8 ~~i~~~l-~~-~~~vIi~a~TGSGKTT~v 34 (819)
T TIGR01970 8 PALRDAL-AA-HPQVVLEAPPGAGKSTAV 34 (819)
T ss_pred HHHHHHH-Hc-CCcEEEECCCCCCHHHHH
Confidence 4444444 33 446678899999999875
No 369
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=31.06 E-value=32 Score=34.54 Aligned_cols=27 Identities=37% Similarity=0.458 Sum_probs=20.2
Q ss_pred HHHHhhc-Cc--ceeEEecccCCCCcceee
Q 006540 166 ILRSALD-GH--NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 166 lV~~vl~-G~--N~~IfAYGqTGSGKTyTM 192 (641)
-++.++. |+ ..++..+|++|+|||+..
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHH
Confidence 4566664 43 567888999999999865
No 370
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=31.05 E-value=2.5e+02 Score=30.51 Aligned_cols=68 Identities=19% Similarity=0.142 Sum_probs=32.5
Q ss_pred cCCCcccceEEecCCCCCCHHHhHHHH-----HHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 394 LGDGSKVLMLVHASPCEEDVGETICSL-----SFAKRARGIESNRELSEDLKKRREIRMAELEEDMREAEAECQNVRN 466 (641)
Q Consensus 394 LgGnskT~mI~~VSP~~~~~~ETlsTL-----rFA~rar~I~~~~~~~~~~~~~~~~~i~~L~~el~~l~~e~~~l~~ 466 (641)
..+.+.++-|---++++.......+++ .|.... ......+.....+.++.+++.++.+.+.++...++
T Consensus 126 ~~~~s~ii~I~~~~~dP~~A~~ian~l~~~~~~~i~~~-----~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 126 VDSVSGILTLNVTAFDAEEAQKINQRLLKEGERLINRL-----NERARKDTIAFAENEVKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred ecCCCCeEEEEEEecCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555566666655655555 222211 01111222233344555566666666555555544
No 371
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=30.99 E-value=33 Score=38.47 Aligned_cols=18 Identities=39% Similarity=0.602 Sum_probs=15.3
Q ss_pred ceeEEecccCCCCcceee
Q 006540 175 NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM 192 (641)
...|+-+|+||+|||+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 356899999999999865
No 372
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=30.99 E-value=1.3e+02 Score=31.43 Aligned_cols=36 Identities=25% Similarity=0.414 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 447 MAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLF 482 (641)
Q Consensus 447 i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~ 482 (641)
..++.+|.++|++|+..|+.++.++++..+|++++.
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~ 106 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLR 106 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666667777777777766666655555554444
No 373
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=30.93 E-value=31 Score=40.68 Aligned_cols=39 Identities=26% Similarity=0.351 Sum_probs=24.6
Q ss_pred cCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 151 NQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 151 ~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
.+..-|..+..++ +...-.....-++..|+||||||...
T Consensus 235 ~lt~~Q~~ai~~I---~~~~~~~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 235 KLTRAQKRVVKEI---LQDLKSDVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCCHHHHHHHHHH---HHHhccCCCccEEEECCCCCcHHHHH
Confidence 4555566665543 22222334445789999999999865
No 374
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.88 E-value=3.4e+02 Score=23.18 Aligned_cols=14 Identities=7% Similarity=0.280 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 006540 451 EEDMREAEAECQNV 464 (641)
Q Consensus 451 ~~el~~l~~e~~~l 464 (641)
+-++.+++++...|
T Consensus 24 QmEieELKEknn~l 37 (79)
T COG3074 24 QMEIEELKEKNNSL 37 (79)
T ss_pred HHHHHHHHHHhhHh
Confidence 33333443333333
No 375
>PRK14530 adenylate kinase; Provisional
Probab=30.77 E-value=21 Score=35.77 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=13.3
Q ss_pred eEEecccCCCCcceee
Q 006540 177 CVLAYGQTGTGKTFTM 192 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM 192 (641)
.|+..|++|||||...
T Consensus 5 ~I~i~G~pGsGKsT~~ 20 (215)
T PRK14530 5 RILLLGAPGAGKGTQS 20 (215)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677999999999764
No 376
>PRK14527 adenylate kinase; Provisional
Probab=30.57 E-value=22 Score=34.77 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=20.9
Q ss_pred eeEEecccCCCCcceeecCCCCCCCchhHHHHHHH
Q 006540 176 VCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELF 210 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM~G~~~~~GIIpRal~~LF 210 (641)
..|+.+|++|||||.....-....|+......+++
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~ 41 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDIL 41 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHH
Confidence 46889999999998765322222344443444444
No 377
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=30.50 E-value=27 Score=41.34 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=21.6
Q ss_pred chhhHhhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 156 QEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 156 Q~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
|.+++..|...+. + +..+++-.+||+|||+..
T Consensus 2 Q~~~~~~i~~al~---~--~~~lliEA~TGtGKTlAY 33 (636)
T TIGR03117 2 QALFYLNCLTSLR---Q--KRIGMLEASTGVGKTLAM 33 (636)
T ss_pred HHHHHHHHHHHHh---c--CCeEEEEcCCCCcHHHHH
Confidence 6677766533332 3 345788889999999664
No 378
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=30.39 E-value=19 Score=36.08 Aligned_cols=16 Identities=38% Similarity=0.544 Sum_probs=14.0
Q ss_pred eEEecccCCCCcceee
Q 006540 177 CVLAYGQTGTGKTFTM 192 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM 192 (641)
.|+..|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5888999999999765
No 379
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=30.18 E-value=26 Score=43.60 Aligned_cols=28 Identities=32% Similarity=0.508 Sum_probs=22.8
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
...|..++.|.+.+| ..|..|+||||+|
T Consensus 352 r~Av~~il~s~~v~v-v~G~AGTGKTT~l 379 (988)
T PRK13889 352 ADALAHVTDGRDLGV-VVGYAGTGKSAML 379 (988)
T ss_pred HHHHHHHhcCCCeEE-EEeCCCCCHHHHH
Confidence 456788888877654 8899999999987
No 380
>PRK03839 putative kinase; Provisional
Probab=30.09 E-value=22 Score=34.38 Aligned_cols=14 Identities=36% Similarity=0.539 Sum_probs=12.2
Q ss_pred EEecccCCCCccee
Q 006540 178 VLAYGQTGTGKTFT 191 (641)
Q Consensus 178 IfAYGqTGSGKTyT 191 (641)
|+-.|..|||||+.
T Consensus 3 I~l~G~pGsGKsT~ 16 (180)
T PRK03839 3 IAITGTPGVGKTTV 16 (180)
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999975
No 381
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=30.06 E-value=29 Score=43.54 Aligned_cols=17 Identities=35% Similarity=0.376 Sum_probs=13.4
Q ss_pred eeEEecccCCCCcceee
Q 006540 176 VCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM 192 (641)
..+.-+|+||||||..+
T Consensus 31 ~l~~I~G~tGaGKStil 47 (1047)
T PRK10246 31 GLFAITGPTGAGKTTLL 47 (1047)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35567899999999854
No 382
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=30.03 E-value=22 Score=35.44 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=21.8
Q ss_pred EEecccCCCCcceeecCCCCCCCchhHHHHHHHHH
Q 006540 178 VLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQ 212 (641)
Q Consensus 178 IfAYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~ 212 (641)
|+.+|+.|||||..-.--....|+..-.+.+|+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~ 36 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRA 36 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHH
Confidence 67899999999875321122345555556566543
No 383
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=30.02 E-value=3.9e+02 Score=24.46 Aligned_cols=28 Identities=21% Similarity=0.458 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 446 RMAELEEDMREAEAECQNVRNQIKEVES 473 (641)
Q Consensus 446 ~i~~L~~el~~l~~e~~~l~~qi~~~e~ 473 (641)
++..+++.+..+-+++..|+.++.++.+
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~E 36 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLE 36 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544433
No 384
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=29.83 E-value=1.1e+02 Score=28.90 Aligned_cols=51 Identities=22% Similarity=0.180 Sum_probs=32.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhhhcCCCCEE
Q 006540 55 VNVVPEQQKNELEQSIINLEGEIVEL-------RLKKRRLDEKRREALNKILDIKGCIR 106 (641)
Q Consensus 55 ~~~~~e~~~~el~~~i~~l~~e~~~l-------~~~~~~~e~~Rr~lhn~i~elkG~Ir 106 (641)
-+.| +=++.|++.+|+.|++|.+.+ ..+++.+|..-|..-.+...++++..
T Consensus 20 R~~W-eiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~~~~ 77 (134)
T PF08232_consen 20 RNQW-EIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKYGTD 77 (134)
T ss_pred HHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 3444 668889999999999999944 44445555544444444555555443
No 385
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=29.74 E-value=24 Score=37.52 Aligned_cols=15 Identities=60% Similarity=0.928 Sum_probs=12.9
Q ss_pred eEEecccCCCCccee
Q 006540 177 CVLAYGQTGTGKTFT 191 (641)
Q Consensus 177 ~IfAYGqTGSGKTyT 191 (641)
.++.||+.|+|||..
T Consensus 207 GvLmYGPPGTGKTlm 221 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTLM 221 (424)
T ss_pred ceEeeCCCCCcHHHH
Confidence 489999999999853
No 386
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.70 E-value=30 Score=37.60 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=19.3
Q ss_pred HHHHhhcCc-ceeEEecccCCCCcceee
Q 006540 166 ILRSALDGH-NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 166 lV~~vl~G~-N~~IfAYGqTGSGKTyTM 192 (641)
+...+-.|. ...++-||+.|+|||++.
T Consensus 29 l~~~i~~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 29 LLNAIENNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 334444564 447788999999999876
No 387
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=29.60 E-value=20 Score=35.10 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.4
Q ss_pred eEEecccCCCCcceee
Q 006540 177 CVLAYGQTGTGKTFTM 192 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM 192 (641)
.|+-.|++|||||..+
T Consensus 4 ~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 4 LIWLMGPSGSGKDSLL 19 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666899999999876
No 388
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=29.60 E-value=33 Score=35.41 Aligned_cols=26 Identities=42% Similarity=0.571 Sum_probs=19.0
Q ss_pred HHHhhcC---cceeEEecccCCCCcceee
Q 006540 167 LRSALDG---HNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 167 V~~vl~G---~N~~IfAYGqTGSGKTyTM 192 (641)
++.++.| ....++.||.+|||||.-.
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~ 40 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFA 40 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHHH
Confidence 4555554 3667899999999998543
No 389
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=29.57 E-value=43 Score=35.24 Aligned_cols=29 Identities=24% Similarity=0.555 Sum_probs=22.0
Q ss_pred HHHHHHhh-cCcceeEEecccCCCCcceee
Q 006540 164 EPILRSAL-DGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 164 ~plV~~vl-~G~N~~IfAYGqTGSGKTyTM 192 (641)
.++=..++ .||.--||..||+|.|||..+
T Consensus 34 ~Qm~~k~mk~GF~FNIMVVgqSglgkstli 63 (336)
T KOG1547|consen 34 EQMRKKTMKTGFDFNIMVVGQSGLGKSTLI 63 (336)
T ss_pred HHHHHHHHhccCceEEEEEecCCCCchhhH
Confidence 33433333 799999999999999998643
No 390
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=29.55 E-value=38 Score=38.15 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=27.9
Q ss_pred hHhhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 159 VFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 159 Vf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
.-+.+..-++.+-+|....-|..|.-||||||.+
T Consensus 33 e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 33 EIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 3344544568888999999999999999999977
No 391
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=29.32 E-value=19 Score=37.19 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=12.6
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
+.-.|++|||||.-|
T Consensus 34 vaI~GpSGSGKSTLL 48 (226)
T COG1136 34 VAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999877
No 392
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=29.32 E-value=24 Score=32.75 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=16.1
Q ss_pred CcceeEEecccCCCCcceee
Q 006540 173 GHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 173 G~N~~IfAYGqTGSGKTyTM 192 (641)
..+.-|+-+|..||||++..
T Consensus 19 ~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHH
T ss_pred CCCCcEEEEcCCCCCHHHHH
Confidence 56677888999999999864
No 393
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=29.23 E-value=26 Score=42.10 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=24.0
Q ss_pred hHHHHHHhhcCcceeEEecccCCCCcceeecC
Q 006540 163 VEPILRSALDGHNVCVLAYGQTGTGKTFTMDG 194 (641)
Q Consensus 163 v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~G 194 (641)
+..+++-+..+....++-||++|+|||....|
T Consensus 191 i~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 191 LERTIQVLCRRKKNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHHHH
Confidence 34566555555566778999999999999865
No 394
>PRK10865 protein disaggregation chaperone; Provisional
Probab=29.20 E-value=20 Score=43.96 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=24.1
Q ss_pred hHHHHHHhhcCcceeEEecccCCCCcceeecC
Q 006540 163 VEPILRSALDGHNVCVLAYGQTGTGKTFTMDG 194 (641)
Q Consensus 163 v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~G 194 (641)
+..+|+-........++-||++|+|||+...|
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHHHHHHH
Confidence 56666655555555677889999999999865
No 395
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=29.18 E-value=4.6e+02 Score=25.89 Aligned_cols=40 Identities=8% Similarity=0.208 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006540 450 LEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSL 489 (641)
Q Consensus 450 L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~~~~~l 489 (641)
|+.++.+++.+++.|..++..++..+...++.+..+...+
T Consensus 109 l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 109 LKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443333344444443333
No 396
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=29.10 E-value=4.8e+02 Score=32.46 Aligned_cols=48 Identities=25% Similarity=0.437 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccCCCchhhHHHh
Q 006540 459 AECQNVRNQIKEVESLLSEKKKLFSAACQSLEDEEKSFVSPKENLKEA 506 (641)
Q Consensus 459 ~e~~~l~~qi~~~e~~~~E~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 506 (641)
..+..+++.+++++..+.-+++.++.....|.++-+.+.+.+.+|++-
T Consensus 1001 h~v~~~~ek~ee~~a~lr~Ke~efeetmdaLq~di~~lEsek~elKqr 1048 (1243)
T KOG0971|consen 1001 HRVEKVQEKLEETQALLRKKEKEFEETMDALQADIDQLESEKAELKQR 1048 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 345666777777888888888888888888888887777888888854
No 397
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=29.10 E-value=39 Score=35.88 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=20.1
Q ss_pred HHHHHhhcCc---ceeEEecccCCCCcceee
Q 006540 165 PILRSALDGH---NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 165 plV~~vl~G~---N~~IfAYGqTGSGKTyTM 192 (641)
+-++.++.|- ...+..||++|||||..+
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~ 112 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQIC 112 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3455666642 456678999999999765
No 398
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=29.10 E-value=27 Score=33.48 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=13.5
Q ss_pred eEEecccCCCCcceee
Q 006540 177 CVLAYGQTGTGKTFTM 192 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM 192 (641)
.|...|++|||||..+
T Consensus 3 ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 3 LIVISGPSGVGKSTLV 18 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999854
No 399
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=29.05 E-value=1.6e+02 Score=31.27 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCEEEEEEeCC
Q 006540 62 QKNELEQSIINLEGEIVELRLKKRRLDEKRREALNKILDIKGCIRVFCRVRS 113 (641)
Q Consensus 62 ~~~el~~~i~~l~~e~~~l~~~~~~~e~~Rr~lhn~i~elkG~IrV~~RvRP 113 (641)
+.++|++++.++..+.......++++...-|+|++--....... +.|||=-
T Consensus 74 EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~~~~~~~-i~A~Vi~ 124 (283)
T TIGR00219 74 ENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPLSSDEYK-ISAEVIY 124 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCc-eEEEEEE
Confidence 34445555555544444443445555555566666544443333 6777643
No 400
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=29.02 E-value=30 Score=37.28 Aligned_cols=42 Identities=29% Similarity=0.368 Sum_probs=25.4
Q ss_pred eceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 146 FDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 146 FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
||..++.+. .+..+...+..+. ..+.-|+-+|.+||||++.-
T Consensus 5 ~~~liG~S~----~~~~~~~~i~~~a-~~~~pVlI~GE~GtGK~~lA 46 (326)
T PRK11608 5 KDNLLGEAN----SFLEVLEQVSRLA-PLDKPVLIIGERGTGKELIA 46 (326)
T ss_pred cCccEECCH----HHHHHHHHHHHHh-CCCCCEEEECCCCCcHHHHH
Confidence 444444433 3333433333433 45777888999999999754
No 401
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=29.01 E-value=20 Score=37.01 Aligned_cols=14 Identities=29% Similarity=0.641 Sum_probs=11.5
Q ss_pred EecccCCCCcceee
Q 006540 179 LAYGQTGTGKTFTM 192 (641)
Q Consensus 179 fAYGqTGSGKTyTM 192 (641)
.-.|++|||||..+
T Consensus 32 ~iiGpSGSGKSTlL 45 (240)
T COG1126 32 VIIGPSGSGKSTLL 45 (240)
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999876
No 402
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=28.98 E-value=47 Score=40.30 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=28.0
Q ss_pred hhhHhh--hHHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 157 EDVFVE--VEPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 157 ~eVf~~--v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
..-|+. |..+++.+-+|.+-.+++ =.||+|||||-+
T Consensus 166 ~RyyQ~~AI~rv~Eaf~~g~~raLlv-MATGTGKTrTAi 203 (875)
T COG4096 166 PRYYQIIAIRRVIEAFSKGQNRALLV-MATGTGKTRTAI 203 (875)
T ss_pred chHHHHHHHHHHHHHHhcCCceEEEE-EecCCCcceeHH
Confidence 445654 478899999999996555 479999999975
No 403
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=28.91 E-value=3.6e+02 Score=22.90 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 447 MAELEEDMREAEAECQNVRNQIKEVES 473 (641)
Q Consensus 447 i~~L~~el~~l~~e~~~l~~qi~~~e~ 473 (641)
|..|+.++.++++++..|.+....++.
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~ 46 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKE 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344555555555554444444433333
No 404
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=28.88 E-value=2.7e+02 Score=27.48 Aligned_cols=32 Identities=13% Similarity=0.273 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 450 LEEDMREAEAECQNVRNQIKEVESLLSEKKKL 481 (641)
Q Consensus 450 L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~ 481 (641)
++.+...++.++..|+.+++.++.+++++.+.
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~ 133 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQR 133 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443333
No 405
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=28.77 E-value=25 Score=39.82 Aligned_cols=16 Identities=50% Similarity=0.702 Sum_probs=13.0
Q ss_pred eEEecccCCCCcceee
Q 006540 177 CVLAYGQTGTGKTFTM 192 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM 192 (641)
-|+..|+||||||+.-
T Consensus 228 NvLllGPtGsGKTlla 243 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLA 243 (564)
T ss_pred cEEEECCCCCchhHHH
Confidence 4577899999999753
No 406
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=28.75 E-value=44 Score=38.91 Aligned_cols=30 Identities=40% Similarity=0.658 Sum_probs=24.7
Q ss_pred hh-HHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 162 EV-EPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 162 ~v-~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
+| +..|-.+|.|..+ +.-.+||||||-...
T Consensus 94 eiQ~~~Ip~aL~G~Dv--lGAAkTGSGKTLAFl 124 (758)
T KOG0343|consen 94 EIQRDTIPMALQGHDV--LGAAKTGSGKTLAFL 124 (758)
T ss_pred HHHHhhcchhccCccc--ccccccCCCceeeeh
Confidence 45 6788889999986 677799999999873
No 407
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=28.69 E-value=32 Score=39.78 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=20.0
Q ss_pred HHHHHHhhcCcceeEEecccCCCCccee
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFT 191 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyT 191 (641)
+..|-.+++|.++.|- .|||||||-.
T Consensus 165 kq~IP~lL~grD~lV~--aQTGSGKTLA 190 (708)
T KOG0348|consen 165 KQAIPVLLEGRDALVR--AQTGSGKTLA 190 (708)
T ss_pred hcchhhhhcCcceEEE--cCCCCcccHH
Confidence 4556677889998555 5999999965
No 408
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.61 E-value=34 Score=39.02 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=17.1
Q ss_pred hhcCc-ceeEEecccCCCCcceee
Q 006540 170 ALDGH-NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 170 vl~G~-N~~IfAYGqTGSGKTyTM 192 (641)
+-.|. ...++-||+.|+|||.+.
T Consensus 30 i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 30 LKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred HHcCCCCeEEEEECCCCCCHHHHH
Confidence 33443 345788999999999886
No 409
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=28.59 E-value=27 Score=41.33 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=14.9
Q ss_pred eeEEecccCCCCcceee
Q 006540 176 VCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM 192 (641)
.-++++|+||||||.++
T Consensus 212 ~H~lv~ApTgsGKgvg~ 228 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSV 228 (623)
T ss_pred ceEEEEeCCCCCcccee
Confidence 45789999999999987
No 410
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.58 E-value=29 Score=40.43 Aligned_cols=16 Identities=38% Similarity=0.366 Sum_probs=13.1
Q ss_pred eEEecccCCCCcceee
Q 006540 177 CVLAYGQTGTGKTFTM 192 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM 192 (641)
.++-||+.|+|||.+.
T Consensus 40 a~Lf~Gp~GvGKTTlA 55 (546)
T PRK14957 40 AYLFTGTRGVGKTTLG 55 (546)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566999999999865
No 411
>PHA02774 E1; Provisional
Probab=28.48 E-value=40 Score=39.57 Aligned_cols=28 Identities=32% Similarity=0.628 Sum_probs=20.8
Q ss_pred HHHHHhhcCc--ceeEEecccCCCCcceee
Q 006540 165 PILRSALDGH--NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 165 plV~~vl~G~--N~~IfAYGqTGSGKTyTM 192 (641)
..+..++.|. .-||+-||+.|+||||--
T Consensus 422 ~~lk~~l~~~PKknciv~~GPP~TGKS~fa 451 (613)
T PHA02774 422 TALKDFLKGIPKKNCLVIYGPPDTGKSMFC 451 (613)
T ss_pred HHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 3445556653 359999999999999864
No 412
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=28.35 E-value=22 Score=35.92 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=13.4
Q ss_pred eEEecccCCCCcceee
Q 006540 177 CVLAYGQTGTGKTFTM 192 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM 192 (641)
.+.-.|+.|||||.+|
T Consensus 27 i~~ivGpNGaGKSTll 42 (212)
T cd03274 27 FSAIVGPNGSGKSNVI 42 (212)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4456799999999998
No 413
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=28.27 E-value=2.1e+02 Score=25.89 Aligned_cols=27 Identities=11% Similarity=0.230 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 446 RMAELEEDMREAEAECQNVRNQIKEVE 472 (641)
Q Consensus 446 ~i~~L~~el~~l~~e~~~l~~qi~~~e 472 (641)
++.++++++.+++++++.|+.+++.++
T Consensus 35 q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 35 QVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555555555555555544443
No 414
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=28.27 E-value=24 Score=33.37 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=12.3
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
|+..|.+|||||+..
T Consensus 2 i~i~G~~GsGKSTla 16 (149)
T cd02027 2 IWLTGLSGSGKSTIA 16 (149)
T ss_pred EEEEcCCCCCHHHHH
Confidence 567799999998754
No 415
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=28.16 E-value=36 Score=40.02 Aligned_cols=44 Identities=23% Similarity=0.517 Sum_probs=25.9
Q ss_pred EEEE-eceeecCCCCchhhHhhhHHHHHHh---hcCcceeEEecccCCCCcc
Q 006540 142 KEFG-FDKVFNQAASQEDVFVEVEPILRSA---LDGHNVCVLAYGQTGTGKT 189 (641)
Q Consensus 142 ~~F~-FD~VF~~~atQ~eVf~~v~plV~~v---l~G~N~~IfAYGqTGSGKT 189 (641)
+.|. |+.+|+ ++++-+.+-..+.++ +..-...++-.|++|+|||
T Consensus 70 ~ry~fF~d~yG----lee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKS 117 (644)
T PRK15455 70 KRYPAFEEFYG----MEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKS 117 (644)
T ss_pred ccccchhcccC----cHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCch
Confidence 3443 555664 445554442222222 2445567888999999999
No 416
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=28.16 E-value=1.2e+02 Score=36.03 Aligned_cols=48 Identities=15% Similarity=0.353 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Q 006540 446 RMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLEDEE 493 (641)
Q Consensus 446 ~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~~~~~l~~e~ 493 (641)
++.+++.++.+++.+.+.+.+++..++..+++.+..+..+.+.+..+.
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~G 257 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEG 257 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555555555555555555555555555555544444444444
No 417
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=28.11 E-value=1.7e+02 Score=28.80 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 446 RMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLF 482 (641)
Q Consensus 446 ~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~ 482 (641)
...+|+.||.+.++||+.|++-+...|....|+++.+
T Consensus 30 E~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 30 EREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3457888888999999999888777777777776653
No 418
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.10 E-value=2.1e+02 Score=30.43 Aligned_cols=36 Identities=22% Similarity=0.522 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 449 ELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSA 484 (641)
Q Consensus 449 ~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~ 484 (641)
++++++.+.+.++..++.+|..+++.+.+.++.+..
T Consensus 70 ~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 70 ELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 419
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=28.07 E-value=2.1e+02 Score=23.70 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 450 LEEDMREAEAECQNVRNQIKEVESLLSE 477 (641)
Q Consensus 450 L~~el~~l~~e~~~l~~qi~~~e~~~~E 477 (641)
++..+++.+..++.|..+|..++..++|
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 420
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=27.90 E-value=1.8e+02 Score=25.87 Aligned_cols=26 Identities=15% Similarity=0.396 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 445 IRMAELEEDMREAEAECQNVRNQIKE 470 (641)
Q Consensus 445 ~~i~~L~~el~~l~~e~~~l~~qi~~ 470 (641)
.++.+|+.++..+..|+..|+.++..
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544433
No 421
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=27.83 E-value=2.8e+02 Score=26.00 Aligned_cols=42 Identities=21% Similarity=0.259 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 443 REIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSA 484 (641)
Q Consensus 443 ~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~ 484 (641)
+...+.+|++.+..++-.+..|+.|.+.+++++++++..+..
T Consensus 68 k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 68 KEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556677777777777777777777777777766665543
No 422
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=27.82 E-value=1.5e+02 Score=24.42 Aligned_cols=26 Identities=23% Similarity=0.558 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 446 RMAELEEDMREAEAECQNVRNQIKEV 471 (641)
Q Consensus 446 ~i~~L~~el~~l~~e~~~l~~qi~~~ 471 (641)
++.+++.++.++++++..|+.+++.+
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555554444444
No 423
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=27.78 E-value=28 Score=32.57 Aligned_cols=15 Identities=27% Similarity=0.598 Sum_probs=11.7
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
|.-.|++|||||..+
T Consensus 2 i~i~GpsGsGKstl~ 16 (137)
T cd00071 2 IVLSGPSGVGKSTLL 16 (137)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999644
No 424
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=27.77 E-value=26 Score=37.56 Aligned_cols=15 Identities=33% Similarity=0.355 Sum_probs=12.6
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
++..++||||||.+.
T Consensus 2 vvi~apTGsGKT~~~ 16 (358)
T TIGR01587 2 LVIEAPTGYGKTEAA 16 (358)
T ss_pred EEEEeCCCCCHHHHH
Confidence 567799999999874
No 425
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=27.72 E-value=21 Score=43.55 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=15.4
Q ss_pred ceeEEecccCCCCcceee
Q 006540 175 NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM 192 (641)
|.-++..|.||||||++|
T Consensus 449 N~N~~I~G~sGsGKS~l~ 466 (844)
T PRK13721 449 NYNMAVCGTSGAGKTGLI 466 (844)
T ss_pred cccEEEEcCCCCCHHHHH
Confidence 445788899999999998
No 426
>PRK00279 adk adenylate kinase; Reviewed
Probab=27.70 E-value=26 Score=35.09 Aligned_cols=15 Identities=27% Similarity=0.476 Sum_probs=13.0
Q ss_pred eEEecccCCCCccee
Q 006540 177 CVLAYGQTGTGKTFT 191 (641)
Q Consensus 177 ~IfAYGqTGSGKTyT 191 (641)
.|+.+|+.|||||..
T Consensus 2 ~I~v~G~pGsGKsT~ 16 (215)
T PRK00279 2 RLILLGPPGAGKGTQ 16 (215)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999965
No 427
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=27.56 E-value=76 Score=40.40 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=23.1
Q ss_pred HhhhHHHHHHhhcCcceeEEecccCCCCccee
Q 006540 160 FVEVEPILRSALDGHNVCVLAYGQTGTGKTFT 191 (641)
Q Consensus 160 f~~v~plV~~vl~G~N~~IfAYGqTGSGKTyT 191 (641)
|..++.-|..+--+..-.++-+|+||+|||-.
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTGaGKTNV 341 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNV 341 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCCCCchHH
Confidence 45565555555556667788899999999964
No 428
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=27.56 E-value=25 Score=41.49 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=16.2
Q ss_pred ceeEEecccCCCCcceeecC
Q 006540 175 NVCVLAYGQTGTGKTFTMDG 194 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM~G 194 (641)
..-++..|..|||||.||..
T Consensus 14 ~~~~~V~Ag~GSGKT~~L~~ 33 (664)
T TIGR01074 14 TGPCLVLAGAGSGKTRVITN 33 (664)
T ss_pred CCCEEEEecCCCCHHHHHHH
Confidence 34578888999999999843
No 429
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=27.52 E-value=1.7e+02 Score=27.43 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 006540 60 EQQKNELEQSIINLEGEIVELRLKKRRLDEKRREALNKILDI 101 (641)
Q Consensus 60 e~~~~el~~~i~~l~~e~~~l~~~~~~~e~~Rr~lhn~i~el 101 (641)
+.....|+.+-..|+.++.++..++..+...-+-||++|..+
T Consensus 90 ~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 90 EESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445567777788888888888888888888889999998754
No 430
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=27.44 E-value=40 Score=39.17 Aligned_cols=44 Identities=23% Similarity=0.384 Sum_probs=27.5
Q ss_pred EEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 144 FGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 144 F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
|.||.+++.+. ....+...+.. +...+..|+-+|.+||||++.-
T Consensus 216 ~~f~~iiG~S~----~m~~~~~~i~~-~A~s~~pVLI~GE~GTGKe~~A 259 (538)
T PRK15424 216 YVLGDLLGQSP----QMEQVRQTILL-YARSSAAVLIQGETGTGKELAA 259 (538)
T ss_pred cchhheeeCCH----HHHHHHHHHHH-HhCCCCcEEEECCCCCCHHHHH
Confidence 55666655433 23333333333 3456889999999999998754
No 431
>PRK00846 hypothetical protein; Provisional
Probab=27.35 E-value=4e+02 Score=23.06 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006540 445 IRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLED 491 (641)
Q Consensus 445 ~~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~~~~~l~~ 491 (641)
.++.+|+..+.-.+.-+..|.+.+...+..+..+++.+..+..++.+
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666555555666555555555555555555444444433
No 432
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=27.33 E-value=2.4e+02 Score=25.51 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 449 ELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFS 483 (641)
Q Consensus 449 ~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~ 483 (641)
.++..+..++..+..+..++..++..+.+.+..+.
T Consensus 71 ~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 71 ELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555555555444443
No 433
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=27.30 E-value=23 Score=41.20 Aligned_cols=18 Identities=39% Similarity=0.505 Sum_probs=14.2
Q ss_pred eeEEecccCCCCcceeec
Q 006540 176 VCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM~ 193 (641)
.+|.-.|++|+|||+|+.
T Consensus 351 ~vIaLVGPtGvGKTTtaa 368 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIA 368 (559)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 345555999999999983
No 434
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=27.29 E-value=23 Score=43.30 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=23.7
Q ss_pred hHHHHHHhhcCcceeEEecccCCCCcceeecC
Q 006540 163 VEPILRSALDGHNVCVLAYGQTGTGKTFTMDG 194 (641)
Q Consensus 163 v~plV~~vl~G~N~~IfAYGqTGSGKTyTM~G 194 (641)
+..+++-...+....++-+|++|+|||+...|
T Consensus 182 i~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 182 IRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 56666665555555566789999999998864
No 435
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=27.27 E-value=20 Score=31.81 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=12.5
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
|.-.|.+|+|||..+
T Consensus 2 V~iiG~~~~GKSTli 16 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLI 16 (116)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999866
No 436
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=27.22 E-value=29 Score=37.46 Aligned_cols=47 Identities=30% Similarity=0.351 Sum_probs=29.2
Q ss_pred eEEecccCCCCcceeecCCCCCCCchhHHHHHHHHHHhcCCCceEEEEEeEEEEecceeeecCCCCCc
Q 006540 177 CVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFRQAALDNSSSVTFSMSMLEVYMGSVRDLLAPKPV 244 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~~~~~~~~~~~~v~vS~lEIYnE~V~DLL~~~~~ 244 (641)
.|+-+|+|+||||.... . +.+.-+. -.|++--++||.+ .|....++.
T Consensus 5 ~i~I~GPTAsGKT~lai-----------~-------LAk~~~~-eIIs~DSmQvYr~--mdIGTAKps 51 (308)
T COG0324 5 LIVIAGPTASGKTALAI-----------A-------LAKRLGG-EIISLDSMQVYRG--LDIGTAKPS 51 (308)
T ss_pred EEEEECCCCcCHHHHHH-----------H-------HHHHcCC-cEEecchhhhcCC--CcccCCCCC
Confidence 57889999999998653 1 1111122 2467777888966 355554443
No 437
>PRK09401 reverse gyrase; Reviewed
Probab=27.19 E-value=41 Score=42.75 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=19.3
Q ss_pred HHHHHhhcCcceeEEecccCCCCccee
Q 006540 165 PILRSALDGHNVCVLAYGQTGTGKTFT 191 (641)
Q Consensus 165 plV~~vl~G~N~~IfAYGqTGSGKTyT 191 (641)
..+..++.|.|+.+.| +||||||..
T Consensus 87 ~~i~~il~g~dv~i~A--pTGsGKT~f 111 (1176)
T PRK09401 87 TWAKRLLLGESFAIIA--PTGVGKTTF 111 (1176)
T ss_pred HHHHHHHCCCcEEEEc--CCCCCHHHH
Confidence 4566778998876655 999999953
No 438
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=27.18 E-value=46 Score=37.72 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=26.8
Q ss_pred HHHHhhcCcceeEEecccCCCCcceeecCCCC----CCCchhHHHHHHHHHHh
Q 006540 166 ILRSALDGHNVCVLAYGQTGTGKTFTMDGTSD----QPGIVPRALEELFRQAA 214 (641)
Q Consensus 166 lV~~vl~G~N~~IfAYGqTGSGKTyTM~G~~~----~~GIIpRal~~LF~~~~ 214 (641)
++.-+=.++|. +-.|++|+||||.-.+-.. ..| -+-.+..||..+.
T Consensus 202 l~~fve~~~Nl--i~lGp~GTGKThla~~l~~~~a~~sG-~f~T~a~Lf~~L~ 251 (449)
T TIGR02688 202 LLPLVEPNYNL--IELGPKGTGKSYIYNNLSPYVILISG-GTITVAKLFYNIS 251 (449)
T ss_pred hHHHHhcCCcE--EEECCCCCCHHHHHHHHhHHHHHHcC-CcCcHHHHHHHHH
Confidence 33334456666 5569999999988754211 134 3334556666544
No 439
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=27.02 E-value=23 Score=35.40 Aligned_cols=17 Identities=41% Similarity=0.634 Sum_probs=15.0
Q ss_pred eEEecccCCCCcceeec
Q 006540 177 CVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM~ 193 (641)
+++-+|++|||||..+.
T Consensus 24 ~~~i~G~NGsGKTTLl~ 40 (204)
T cd03240 24 LTLIVGQNGAGKTTIIE 40 (204)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 77889999999998873
No 440
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=27.01 E-value=29 Score=39.06 Aligned_cols=14 Identities=57% Similarity=0.959 Sum_probs=12.3
Q ss_pred eEEecccCCCCcce
Q 006540 177 CVLAYGQTGTGKTF 190 (641)
Q Consensus 177 ~IfAYGqTGSGKTy 190 (641)
.|+-||+.|+|||-
T Consensus 386 NilfyGPPGTGKTm 399 (630)
T KOG0742|consen 386 NILFYGPPGTGKTM 399 (630)
T ss_pred heeeeCCCCCCchH
Confidence 48899999999983
No 441
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=26.97 E-value=27 Score=39.22 Aligned_cols=17 Identities=41% Similarity=0.622 Sum_probs=15.1
Q ss_pred eeEEecccCCCCcceee
Q 006540 176 VCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM 192 (641)
..|+-+|+||+|||+..
T Consensus 117 ~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLA 133 (413)
T ss_pred ceEEEECCCCcCHHHHH
Confidence 57899999999999876
No 442
>CHL00095 clpC Clp protease ATP binding subunit
Probab=26.93 E-value=44 Score=40.80 Aligned_cols=37 Identities=35% Similarity=0.384 Sum_probs=23.7
Q ss_pred chhhHhhhHHHHHHhhcCc------ceeEEecccCCCCcceee
Q 006540 156 QEDVFVEVEPILRSALDGH------NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 156 Q~eVf~~v~plV~~vl~G~------N~~IfAYGqTGSGKTyTM 192 (641)
|++.-..|...|....-|. .+.++-+|+||+|||++.
T Consensus 514 Q~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA 556 (821)
T CHL00095 514 QDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELT 556 (821)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHH
Confidence 5555555555454444443 245666999999999875
No 443
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=26.91 E-value=39 Score=36.79 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=25.5
Q ss_pred eecCCCCchhhHh-hh-HHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 149 VFNQAASQEDVFV-EV-EPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 149 VF~~~atQ~eVf~-~v-~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
.+-|...-.-+|+ ++ ..++..+.. +.-|+-.|++|+|||...
T Consensus 38 ~~~p~~d~~y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 38 EHVPDIDPAYLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHH
Confidence 3334444444554 23 445544443 345888999999999865
No 444
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=26.89 E-value=25 Score=36.25 Aligned_cols=15 Identities=53% Similarity=0.600 Sum_probs=11.6
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
++-+|+||+|||..-
T Consensus 4 ~~i~GpT~tGKt~~a 18 (233)
T PF01745_consen 4 YLIVGPTGTGKTALA 18 (233)
T ss_dssp EEEE-STTSSHHHHH
T ss_pred EEEECCCCCChhHHH
Confidence 567899999999864
No 445
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=26.87 E-value=2.6e+02 Score=26.12 Aligned_cols=44 Identities=20% Similarity=0.360 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Q 006540 450 LEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLEDEE 493 (641)
Q Consensus 450 L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~~~~~l~~e~ 493 (641)
+..++..++.++..++.........+.+.+..|......++.+.
T Consensus 64 lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~ 107 (132)
T PF07926_consen 64 LREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKEL 107 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444443
No 446
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=26.70 E-value=42 Score=34.96 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=14.5
Q ss_pred ceeEEecccCCCCccee
Q 006540 175 NVCVLAYGQTGTGKTFT 191 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyT 191 (641)
..+++.+|++|+|||.-
T Consensus 36 gs~~lI~G~pGtGKT~l 52 (259)
T TIGR03878 36 YSVINITGVSDTGKSLM 52 (259)
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 56788899999999963
No 447
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=26.70 E-value=25 Score=42.77 Aligned_cols=16 Identities=38% Similarity=0.640 Sum_probs=13.9
Q ss_pred eEEecccCCCCcceee
Q 006540 177 CVLAYGQTGTGKTFTM 192 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM 192 (641)
-.+..|+||||||++|
T Consensus 443 n~~I~G~tGsGKS~l~ 458 (811)
T PRK13873 443 HTLVVGPTGAGKSVLL 458 (811)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4567899999999998
No 448
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=26.59 E-value=24 Score=42.30 Aligned_cols=17 Identities=53% Similarity=0.749 Sum_probs=14.8
Q ss_pred eeEEecccCCCCcceee
Q 006540 176 VCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM 192 (641)
-.|+-||++|+|||+.+
T Consensus 213 ~giLL~GppGtGKT~la 229 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLA 229 (733)
T ss_pred ceEEEECCCCCChHHHH
Confidence 45889999999999875
No 449
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=26.54 E-value=32 Score=39.02 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=24.6
Q ss_pred EeceeecCCCCchhhHhhhHHHHHHhhcCc-ceeEEecccCCCCcceee
Q 006540 145 GFDKVFNQAASQEDVFVEVEPILRSALDGH-NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 145 ~FD~VF~~~atQ~eVf~~v~plV~~vl~G~-N~~IfAYGqTGSGKTyTM 192 (641)
+||.|++ |+.+- ..+...+-.|. .-+++-||+.|+|||.+.
T Consensus 15 ~~~diiG----q~~~v---~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A 56 (451)
T PRK06305 15 TFSEILG----QDAVV---AVLKNALRFNRAAHAYLFSGIRGTGKTTLA 56 (451)
T ss_pred CHHHhcC----cHHHH---HHHHHHHHcCCCceEEEEEcCCCCCHHHHH
Confidence 4566654 33332 33333334554 345667999999999876
No 450
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=26.50 E-value=29 Score=37.37 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=12.9
Q ss_pred eEEecccCCCCccee
Q 006540 177 CVLAYGQTGTGKTFT 191 (641)
Q Consensus 177 ~IfAYGqTGSGKTyT 191 (641)
.|+..|+||||||..
T Consensus 6 ~i~i~GptgsGKt~l 20 (307)
T PRK00091 6 VIVIVGPTASGKTAL 20 (307)
T ss_pred EEEEECCCCcCHHHH
Confidence 578899999999964
No 451
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=26.49 E-value=21 Score=43.24 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=14.7
Q ss_pred eeEEecccCCCCcceee
Q 006540 176 VCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM 192 (641)
+-.+.+|+||||||.+|
T Consensus 427 g~~~I~G~tGsGKS~l~ 443 (789)
T PRK13853 427 GMTAIFGPIGRGKTTLM 443 (789)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34778999999999987
No 452
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=26.46 E-value=29 Score=39.18 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=16.1
Q ss_pred ceeEEecccCCCCcceeec
Q 006540 175 NVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM~ 193 (641)
...|+..|.+|||||.|..
T Consensus 99 p~vi~~vG~~GsGKTTtaa 117 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCG 117 (428)
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 4578888999999999973
No 453
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=26.44 E-value=41 Score=38.99 Aligned_cols=45 Identities=24% Similarity=0.496 Sum_probs=30.1
Q ss_pred EEEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 143 EFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 143 ~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
.|.||.+++.+. ....+...+.. +...+..|+-+|.+||||++.-
T Consensus 208 ~~~f~~iiG~S~----~m~~~~~~i~~-~A~~~~pVLI~GE~GTGKe~lA 252 (526)
T TIGR02329 208 RYRLDDLLGASA----PMEQVRALVRL-YARSDATVLILGESGTGKELVA 252 (526)
T ss_pred ccchhheeeCCH----HHHHHHHHHHH-HhCCCCcEEEECCCCcCHHHHH
Confidence 477888776544 33334333333 3456789999999999998754
No 454
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=26.38 E-value=82 Score=33.52 Aligned_cols=35 Identities=26% Similarity=0.485 Sum_probs=25.7
Q ss_pred hhhHhhhHHHHHHhh-----cCcceeEEecccCCCCcceee
Q 006540 157 EDVFVEVEPILRSAL-----DGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 157 ~eVf~~v~plV~~vl-----~G~N~~IfAYGqTGSGKTyTM 192 (641)
+++|+.+.++++-.+ +|.+...+|.|.|| ||--+.
T Consensus 219 ~ef~~~l~~~l~~~LP~y~~egks~lTIaIGCTG-GqHRSV 258 (286)
T COG1660 219 EEFYEKLRDLLEFWLPRYEKEGKSYLTIAIGCTG-GQHRSV 258 (286)
T ss_pred HHHHHHHHHHHHHHhHHHHhcCCeEEEEEEccCC-CccchH
Confidence 445566666666655 78899999999999 666655
No 455
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=26.31 E-value=3.6e+02 Score=21.96 Aligned_cols=36 Identities=17% Similarity=0.336 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 447 MAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLF 482 (641)
Q Consensus 447 i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~ 482 (641)
+.+++.++-.++..+..++.+++++...+++.++..
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777766666555544
No 456
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=26.24 E-value=28 Score=34.64 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=13.3
Q ss_pred eeEEecccCCCCcceee
Q 006540 176 VCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM 192 (641)
..|.-.|++|||||+.+
T Consensus 7 ~vi~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVA 23 (207)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34667899999999754
No 457
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=26.18 E-value=34 Score=41.29 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=21.4
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
...|..++.+- ..++..|..|+||||+|-
T Consensus 358 ~~Av~~i~~s~-~~~il~G~aGTGKTtll~ 386 (744)
T TIGR02768 358 YEAVRHVTGSG-DIAVVVGRAGTGKSTMLK 386 (744)
T ss_pred HHHHHHHhcCC-CEEEEEecCCCCHHHHHH
Confidence 34566677653 356788999999999984
No 458
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=26.18 E-value=3.6e+02 Score=28.25 Aligned_cols=75 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccCCCchhhHHHhhcC
Q 006540 432 NRELSEDLKKRREIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLEDEEKSFVSPKENLKEAAET 509 (641)
Q Consensus 432 ~~~~~~~~~~~~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 509 (641)
..+.+..-.......+..++.++..++.++..+.+.+..++..+...+..+..+...+.+.. ......+..+.+.
T Consensus 83 ~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~---~~~e~e~~~i~e~ 157 (239)
T COG1579 83 SAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE---ARLEEEVAEIREE 157 (239)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
No 459
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=26.16 E-value=3.5e+02 Score=26.45 Aligned_cols=21 Identities=14% Similarity=0.495 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006540 451 EEDMREAEAECQNVRNQIKEV 471 (641)
Q Consensus 451 ~~el~~l~~e~~~l~~qi~~~ 471 (641)
+..+.++.+++..+++.+.+.
T Consensus 87 ~~~l~~l~~el~~l~~~~~~~ 107 (191)
T PF04156_consen 87 QQQLQQLQEELDQLQERIQEL 107 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 460
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=26.14 E-value=31 Score=40.54 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=27.8
Q ss_pred EEEeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 143 EFGFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 143 ~F~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
.+.||.+.+.+ ..+..+...+..+. ..+..|+-+|.+|+||++.-
T Consensus 321 ~~~~~~l~g~s----~~~~~~~~~~~~~a-~~~~pvli~Ge~GtGK~~~A 365 (638)
T PRK11388 321 SHTFDHMPQDS----PQMRRLIHFGRQAA-KSSFPVLLCGEEGVGKALLA 365 (638)
T ss_pred cccccceEECC----HHHHHHHHHHHHHh-CcCCCEEEECCCCcCHHHHH
Confidence 45566665432 33444433334433 45777999999999998754
No 461
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=26.13 E-value=25 Score=33.66 Aligned_cols=15 Identities=47% Similarity=0.629 Sum_probs=12.6
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
+.-.|.+|+|||.+.
T Consensus 3 ~~~~G~~G~GKTt~~ 17 (173)
T cd03115 3 ILLVGLQGVGKTTTA 17 (173)
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999986
No 462
>PLN02200 adenylate kinase family protein
Probab=25.99 E-value=30 Score=35.57 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=22.5
Q ss_pred eeEEecccCCCCcceeecCCCCCCCchhHHHHHHHH
Q 006540 176 VCVLAYGQTGTGKTFTMDGTSDQPGIVPRALEELFR 211 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM~G~~~~~GIIpRal~~LF~ 211 (641)
..|+..|.+|||||.--..-....|+....+.+|+.
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR 79 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLR 79 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHH
Confidence 468999999999997642212233555445555554
No 463
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=25.91 E-value=30 Score=35.85 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=14.4
Q ss_pred eeEEecccCCCCcceee
Q 006540 176 VCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM 192 (641)
-++..+|++|||||..+
T Consensus 31 e~~~i~G~nGsGKSTL~ 47 (235)
T COG1122 31 ERVLLIGPNGSGKSTLL 47 (235)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 36788999999999876
No 464
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=25.84 E-value=26 Score=35.08 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=14.1
Q ss_pred eeEEecccCCCCcceee
Q 006540 176 VCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM 192 (641)
..+.-.|++|||||..|
T Consensus 29 ~~~~i~G~NGsGKSTll 45 (213)
T cd03279 29 GLFLICGPTGAGKSTIL 45 (213)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35567899999999887
No 465
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=25.83 E-value=51 Score=42.19 Aligned_cols=32 Identities=34% Similarity=0.481 Sum_probs=20.3
Q ss_pred hHhhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 159 VFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 159 Vf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
||.....+++. +.+ |..++..|.||||||.-+
T Consensus 68 i~~~~~~Il~~-l~~-~~vvii~g~TGSGKTTql 99 (1283)
T TIGR01967 68 VSAKREDIAEA-IAE-NQVVIIAGETGSGKTTQL 99 (1283)
T ss_pred HHHHHHHHHHH-HHh-CceEEEeCCCCCCcHHHH
Confidence 44433444444 344 445677799999999865
No 466
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=25.72 E-value=30 Score=36.23 Aligned_cols=17 Identities=29% Similarity=0.433 Sum_probs=13.9
Q ss_pred eeEEecccCCCCcceee
Q 006540 176 VCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM 192 (641)
..|+..|..|||||+.-
T Consensus 3 ~liil~G~pGSGKSTla 19 (300)
T PHA02530 3 KIILTVGVPGSGKSTWA 19 (300)
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 36788999999998753
No 467
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=25.70 E-value=34 Score=40.16 Aligned_cols=27 Identities=37% Similarity=0.369 Sum_probs=18.8
Q ss_pred HHHHHhhcCcceeEEecccCCCCcceeec
Q 006540 165 PILRSALDGHNVCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 165 plV~~vl~G~N~~IfAYGqTGSGKTyTM~ 193 (641)
..|..++.. ...+..|..|||||||+.
T Consensus 152 ~A~~~al~~--~~~vitGgpGTGKTt~v~ 178 (586)
T TIGR01447 152 VAVALALKS--NFSLITGGPGTGKTTTVA 178 (586)
T ss_pred HHHHHHhhC--CeEEEEcCCCCCHHHHHH
Confidence 345666663 344557899999999973
No 468
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=25.66 E-value=1.3e+02 Score=24.65 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006540 446 RMAELEEDMREAEAECQNVR 465 (641)
Q Consensus 446 ~i~~L~~el~~l~~e~~~l~ 465 (641)
+|.+|+.++.+++.|+..|+
T Consensus 22 ~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 22 QIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 469
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=25.60 E-value=1.6e+02 Score=31.75 Aligned_cols=66 Identities=20% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccCCCchhhHHHhh
Q 006540 442 RREIRMAELEEDMREAEAECQNVRNQIKEVESLLSEKKKLFSAACQSLEDEEKSFVSPKENLKEAA 507 (641)
Q Consensus 442 ~~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 507 (641)
.+...+.+++.++..++.+++.+.++..+++.++.+.++...........|...+-...+.|+.+.
T Consensus 227 ~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 227 AKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
No 470
>PRK02496 adk adenylate kinase; Provisional
Probab=25.58 E-value=30 Score=33.53 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=12.7
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
|+..|+.|||||...
T Consensus 4 i~i~G~pGsGKst~a 18 (184)
T PRK02496 4 LIFLGPPGAGKGTQA 18 (184)
T ss_pred EEEECCCCCCHHHHH
Confidence 667899999998765
No 471
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=25.52 E-value=70 Score=30.81 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=23.2
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCE
Q 006540 54 DVNVVPEQQKNELEQSIINLEGEIVELRLKKRRLDEKRREALNKILDIKGCI 105 (641)
Q Consensus 54 ~~~~~~e~~~~el~~~i~~l~~e~~~l~~~~~~~e~~Rr~lhn~i~elkG~I 105 (641)
|+.-+ -+.+..|++.+......+..|++.+..++....+....|++|+-++
T Consensus 21 ~~e~l-l~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~ 71 (160)
T PF13094_consen 21 DYEQL-LDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNA 71 (160)
T ss_pred cHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 3344455555554444444444444444444444444444443333
No 472
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=25.48 E-value=2.9e+02 Score=24.95 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 443 REIRMAELEEDMREAEAECQNVRNQIKEVESLLSEK 478 (641)
Q Consensus 443 ~~~~i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~ 478 (641)
...++..++..+..+++....++.++.+++..+.+.
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777777777777766553
No 473
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=25.47 E-value=24 Score=41.16 Aligned_cols=16 Identities=38% Similarity=0.719 Sum_probs=13.0
Q ss_pred eEEecccCCCCcceee
Q 006540 177 CVLAYGQTGTGKTFTM 192 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM 192 (641)
-++.+|.||||||..|
T Consensus 178 h~li~G~tGsGKs~~i 193 (566)
T TIGR02759 178 HILIHGTTGSGKSVAI 193 (566)
T ss_pred ceEEEcCCCCCHHHHH
Confidence 4688999999999543
No 474
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=25.34 E-value=97 Score=35.60 Aligned_cols=19 Identities=16% Similarity=0.456 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006540 446 RMAELEEDMREAEAECQNV 464 (641)
Q Consensus 446 ~i~~L~~el~~l~~e~~~l 464 (641)
+|++|+++|.+|+++...+
T Consensus 32 kie~L~kql~~Lk~q~~~l 50 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDL 50 (489)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 3444444444444444433
No 475
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=25.32 E-value=4.4e+02 Score=23.00 Aligned_cols=11 Identities=9% Similarity=0.450 Sum_probs=4.9
Q ss_pred hhhHHHhhccC
Q 006540 486 CQSLEDEEKSF 496 (641)
Q Consensus 486 ~~~l~~e~~~~ 496 (641)
.+.+..+...|
T Consensus 55 n~qLk~E~~~W 65 (79)
T PRK15422 55 NNHLKEQQNGW 65 (79)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 476
>PRK10689 transcription-repair coupling factor; Provisional
Probab=25.29 E-value=43 Score=42.48 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=14.4
Q ss_pred ceeEEecccCCCCcceee
Q 006540 175 NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM 192 (641)
..-++++|+||||||-+.
T Consensus 621 ~~d~Ll~a~TGsGKT~va 638 (1147)
T PRK10689 621 AMDRLVCGDVGFGKTEVA 638 (1147)
T ss_pred CCCEEEEcCCCcCHHHHH
Confidence 345899999999999643
No 477
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=25.20 E-value=43 Score=38.23 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=21.2
Q ss_pred HHHHHhhcC---cceeEEecccCCCCccee
Q 006540 165 PILRSALDG---HNVCVLAYGQTGTGKTFT 191 (641)
Q Consensus 165 plV~~vl~G---~N~~IfAYGqTGSGKTyT 191 (641)
+=++.++.| ...+++.+|++|||||.-
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~l 37 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLF 37 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHH
Confidence 345777765 478899999999999954
No 478
>PRK14701 reverse gyrase; Provisional
Probab=25.18 E-value=57 Score=42.92 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=20.6
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcce
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTF 190 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTy 190 (641)
+..+..++.|.++. +.+|||||||.
T Consensus 85 ~~~i~~il~G~d~l--i~APTGsGKTl 109 (1638)
T PRK14701 85 KTWAKRILRGKSFS--IVAPTGMGKST 109 (1638)
T ss_pred HHHHHHHHcCCCEE--EEEcCCCCHHH
Confidence 56778889999864 56799999998
No 479
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=25.18 E-value=36 Score=39.12 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=22.3
Q ss_pred hHHHHHHhhcCcc------eeEEecccCCCCcceeec
Q 006540 163 VEPILRSALDGHN------VCVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 163 v~plV~~vl~G~N------~~IfAYGqTGSGKTyTM~ 193 (641)
|+.=+..+++|.+ -.|+-.|++|||||+.|-
T Consensus 14 Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 14 IQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 4444556666643 346779999999999885
No 480
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=25.18 E-value=5.3e+02 Score=29.23 Aligned_cols=48 Identities=23% Similarity=0.385 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Q 006540 446 RMAELEEDMREAEAECQ----NVRNQIKEVESLLSEKKKLFSAACQSLEDEE 493 (641)
Q Consensus 446 ~i~~L~~el~~l~~e~~----~l~~qi~~~e~~~~E~~~~~~~~~~~l~~e~ 493 (641)
.+..++..|..-++++. ....+.+.+...++|.++....+...++.+.
T Consensus 172 ~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q 223 (420)
T COG4942 172 QLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQ 223 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444 4455666677777777777777776666665
No 481
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=25.14 E-value=35 Score=41.34 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=19.8
Q ss_pred HHHHHHhhcCcceeEEecccCCCCcceeecC
Q 006540 164 EPILRSALDGHNVCVLAYGQTGTGKTFTMDG 194 (641)
Q Consensus 164 ~plV~~vl~G~N~~IfAYGqTGSGKTyTM~G 194 (641)
..+++-+.......++-||++|+|||+...|
T Consensus 196 ~~~i~iL~r~~~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 196 ERAIQVLCRRRKNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred HHHHHHHhccCCCCeEEECCCCCCHHHHHHH
Confidence 4444433333333445599999999999865
No 482
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=25.09 E-value=27 Score=42.73 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=15.4
Q ss_pred ceeEEecccCCCCcceee
Q 006540 175 NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM 192 (641)
++-.+..|+||||||+.|
T Consensus 488 ~gh~~I~G~tGsGKS~l~ 505 (852)
T PRK13891 488 LGHTFMFGPTGAGKSTHL 505 (852)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 445688999999999988
No 483
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=25.06 E-value=32 Score=36.72 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=12.8
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
|+..|+||||||...
T Consensus 2 i~i~G~t~~GKs~la 16 (287)
T TIGR00174 2 IFIMGPTAVGKSQLA 16 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999754
No 484
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=25.01 E-value=37 Score=40.52 Aligned_cols=20 Identities=25% Similarity=0.307 Sum_probs=16.6
Q ss_pred CcceeEEecccCCCCcceee
Q 006540 173 GHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 173 G~N~~IfAYGqTGSGKTyTM 192 (641)
+-+.-++++|+||||||..+
T Consensus 137 ~~~~hvlviApTgSGKgvg~ 156 (670)
T PRK13850 137 GEQPHSLVVAPTRAGKGVGV 156 (670)
T ss_pred CCCceEEEEecCCCCceeee
Confidence 34556889999999999988
No 485
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.98 E-value=39 Score=38.68 Aligned_cols=17 Identities=35% Similarity=0.389 Sum_probs=13.3
Q ss_pred eeEEecccCCCCcceee
Q 006540 176 VCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 176 ~~IfAYGqTGSGKTyTM 192 (641)
-.++-||+.|+|||++.
T Consensus 39 hayLf~Gp~G~GKTtlA 55 (486)
T PRK14953 39 HAYIFAGPRGTGKTTIA 55 (486)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34556999999998765
No 486
>PRK04296 thymidine kinase; Provisional
Probab=24.93 E-value=21 Score=35.28 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=14.1
Q ss_pred eEEecccCCCCcceeec
Q 006540 177 CVLAYGQTGTGKTFTMD 193 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM~ 193 (641)
.++-+|+.|+|||..+.
T Consensus 4 i~litG~~GsGKTT~~l 20 (190)
T PRK04296 4 LEFIYGAMNSGKSTELL 20 (190)
T ss_pred EEEEECCCCCHHHHHHH
Confidence 46789999999997664
No 487
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=24.88 E-value=34 Score=39.24 Aligned_cols=43 Identities=19% Similarity=0.360 Sum_probs=27.2
Q ss_pred EeceeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCcceee
Q 006540 145 GFDKVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 145 ~FD~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyTM 192 (641)
.|+.+.+.+. ....+...|.. +...+..|+-+|.+|+||++.-
T Consensus 185 ~~~~iig~s~----~~~~~~~~i~~-~a~~~~pVlI~Ge~GtGK~~~A 227 (509)
T PRK05022 185 KEGEMIGQSP----AMQQLKKEIEV-VAASDLNVLILGETGVGKELVA 227 (509)
T ss_pred cCCceeecCH----HHHHHHHHHHH-HhCCCCcEEEECCCCccHHHHH
Confidence 3455555433 33333333444 3456889999999999999754
No 488
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=24.87 E-value=32 Score=34.00 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=11.7
Q ss_pred EEecccCCCCccee
Q 006540 178 VLAYGQTGTGKTFT 191 (641)
Q Consensus 178 IfAYGqTGSGKTyT 191 (641)
|+-.|++|||||+-
T Consensus 3 iiilG~pGaGK~T~ 16 (178)
T COG0563 3 ILILGPPGAGKSTL 16 (178)
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999864
No 489
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=24.82 E-value=1.9e+02 Score=23.90 Aligned_cols=32 Identities=13% Similarity=0.314 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006540 447 MAELEEDMREAEAECQNVRNQIKEVESLLSEK 478 (641)
Q Consensus 447 i~~L~~el~~l~~e~~~l~~qi~~~e~~~~E~ 478 (641)
+..+..++.+++.+++.++.+...++.+++..
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566667777777777776666666665544
No 490
>PRK07667 uridine kinase; Provisional
Probab=24.79 E-value=51 Score=32.56 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=16.6
Q ss_pred cCcceeEEecccCCCCcceee
Q 006540 172 DGHNVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 172 ~G~N~~IfAYGqTGSGKTyTM 192 (641)
.|....|.-.|.+|||||+..
T Consensus 14 ~~~~~iIgI~G~~gsGKStla 34 (193)
T PRK07667 14 KENRFILGIDGLSRSGKTTFV 34 (193)
T ss_pred CCCCEEEEEECCCCCCHHHHH
Confidence 455567778899999999865
No 491
>PRK14528 adenylate kinase; Provisional
Probab=24.78 E-value=31 Score=33.87 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=13.1
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
|+..|++|||||+..
T Consensus 4 i~i~G~pGsGKtt~a 18 (186)
T PRK14528 4 IIFMGPPGAGKGTQA 18 (186)
T ss_pred EEEECCCCCCHHHHH
Confidence 778999999998764
No 492
>PTZ00301 uridine kinase; Provisional
Probab=24.76 E-value=25 Score=35.66 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=11.7
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
|---|++|||||+.-
T Consensus 6 IgIaG~SgSGKTTla 20 (210)
T PTZ00301 6 IGISGASGSGKSSLS 20 (210)
T ss_pred EEEECCCcCCHHHHH
Confidence 445699999999854
No 493
>PRK05480 uridine/cytidine kinase; Provisional
Probab=24.72 E-value=30 Score=34.31 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=14.4
Q ss_pred ceeEEecccCCCCcceee
Q 006540 175 NVCVLAYGQTGTGKTFTM 192 (641)
Q Consensus 175 N~~IfAYGqTGSGKTyTM 192 (641)
...|.--|.+|||||+..
T Consensus 6 ~~iI~I~G~sGsGKTTl~ 23 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVA 23 (209)
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 345677899999999766
No 494
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=24.65 E-value=47 Score=39.23 Aligned_cols=27 Identities=11% Similarity=0.141 Sum_probs=18.9
Q ss_pred cccceEEecCCCCCCHHHhHHHHHHHH
Q 006540 398 SKVLMLVHASPCEEDVGETICSLSFAK 424 (641)
Q Consensus 398 skT~mI~~VSP~~~~~~ETlsTLrFA~ 424 (641)
.++.+.++|.|.....-.-|-.|=|.+
T Consensus 364 ~k~tiYl~i~pd~~~~~~pLi~lf~~q 390 (606)
T PRK13897 364 KKTTVYVGLTPDNLTRLQPLMQVFYQQ 390 (606)
T ss_pred CCeEEEEEEchhhChhHHHHHHHHHHH
Confidence 578889999997766555565565543
No 495
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=24.65 E-value=2e+02 Score=32.94 Aligned_cols=13 Identities=15% Similarity=-0.161 Sum_probs=8.9
Q ss_pred CCCcccccchhhh
Q 006540 562 QFSCSQSLSFLDI 574 (641)
Q Consensus 562 ~~~~~~~~~~~~~ 574 (641)
+.++.+|++|+.-
T Consensus 191 ~~~~~~~~~f~~~ 203 (475)
T PRK13729 191 VPNRIQRKTFTYN 203 (475)
T ss_pred CCCceeEEEeecc
Confidence 4667788888643
No 496
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=24.60 E-value=33 Score=33.10 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=13.7
Q ss_pred eEEecccCCCCcceee
Q 006540 177 CVLAYGQTGTGKTFTM 192 (641)
Q Consensus 177 ~IfAYGqTGSGKTyTM 192 (641)
.|+..|++|||||...
T Consensus 4 ~i~l~G~~gsGKst~a 19 (175)
T cd00227 4 IIILNGGSSAGKSSIA 19 (175)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5888999999999754
No 497
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=24.57 E-value=36 Score=27.89 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=11.9
Q ss_pred EEecccCCCCcceee
Q 006540 178 VLAYGQTGTGKTFTM 192 (641)
Q Consensus 178 IfAYGqTGSGKTyTM 192 (641)
|+-.|..|||||..+
T Consensus 2 i~i~G~~gsGKst~~ 16 (69)
T cd02019 2 IAITGGSGSGKSTVA 16 (69)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999998765
No 498
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.56 E-value=38 Score=38.85 Aligned_cols=42 Identities=21% Similarity=0.329 Sum_probs=0.0
Q ss_pred eeecCCCCchhhHhhhHHHHHHhhcCcceeEEecccCCCCccee
Q 006540 148 KVFNQAASQEDVFVEVEPILRSALDGHNVCVLAYGQTGTGKTFT 191 (641)
Q Consensus 148 ~VF~~~atQ~eVf~~v~plV~~vl~G~N~~IfAYGqTGSGKTyT 191 (641)
+.|+.-..|+.+...+...+.. .....+++-||+.|+|||.+
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~--~ri~ha~Lf~GP~GtGKTTl 56 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKS--GKIGHAYIFFGPRGVGKTTI 56 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHH
No 499
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=24.49 E-value=54 Score=35.07 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=0.0
Q ss_pred HHHHHhhcCc---ceeEEecccCCCCcc
Q 006540 165 PILRSALDGH---NVCVLAYGQTGTGKT 189 (641)
Q Consensus 165 plV~~vl~G~---N~~IfAYGqTGSGKT 189 (641)
+-++.++.|- ...+.-||++|||||
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT 116 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKT 116 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHh
No 500
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=24.48 E-value=50 Score=33.10 Aligned_cols=25 Identities=40% Similarity=0.639 Sum_probs=0.0
Q ss_pred HHHHHhhcC---cceeEEecccCCCCcc
Q 006540 165 PILRSALDG---HNVCVLAYGQTGTGKT 189 (641)
Q Consensus 165 plV~~vl~G---~N~~IfAYGqTGSGKT 189 (641)
+-++.++.| ....++-+|.+|+|||
T Consensus 3 ~~LD~~l~gGi~~g~~~li~G~~G~GKt 30 (224)
T TIGR03880 3 PGLDEMLGGGFPEGHVIVVIGEYGTGKT 30 (224)
T ss_pred hhhHHHhcCCCCCCeEEEEECCCCCCHH
Done!