BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006541
(641 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z90|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g03250, A Putative Udp-Glucose Pyrophosphorylase
pdb|1Z90|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g03250, A Putative Udp-Glucose Pyrophosphorylase
pdb|2Q4J|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g03250, A
Putative Udp-Glucose Pyrophosphorylase
pdb|2Q4J|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g03250, A
Putative Udp-Glucose Pyrophosphorylase
Length = 469
Score = 382 bits (981), Expect = e-106, Method: Compositional matrix adjust.
Identities = 213/418 (50%), Positives = 277/418 (66%), Gaps = 14/418 (3%)
Query: 236 DEILVVPYESLASISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLD 295
DEI VVPYE + +S+D+AETK LLDKLVV+K NG LGT MG +GPKS IEV++ LT LD
Sbjct: 54 DEI-VVPYEKMTPVSQDVAETKNLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRDGLTFLD 112
Query: 296 LMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQQPHEKSFE 355
L+V Q+E+LN+KYGC VPL+LMN+ THD K++EKY+NS VDIH+ + S+ P + E
Sbjct: 113 LIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNSNVDIHTFNQSKYPRVVADE 172
Query: 356 -------GHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYXXXXXXXXXXXXXXPK 408
G + K+ YP H VF +LM SG LD L QGKEY
Sbjct: 173 FVPWPSKGKTDKEGWYPPG-HGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLT 231
Query: 409 IFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTK-----QSGGKFKF 463
I HLIQN+ EYCMEV P D++ + GK QL++I Q P + +S KFK
Sbjct: 232 ILKHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKI 291
Query: 464 INTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINV 523
NT ++WVNL+AIK+L++ D LK+E + KEV+ +++ TAA +AI+FFD+ IG+NV
Sbjct: 292 FNTNNLWVNLKAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGVNV 351
Query: 524 AQSRYLPVNSTXXXXXXXXXXYTADEGILVQNPARDNPANPSIELGPEFEKVNNFQSRFK 583
+SR+LPV ++ YT +G + +N AR NP+NPSIELGPEF+KV F SRFK
Sbjct: 352 PRSRFLPVKASSDLLLVQSDLYTLVDGFVTRNKARTNPSNPSIELGPEFKKVATFLSRFK 411
Query: 584 SIPSIINLDSLKVEGDVWFGAGITLKGKVSIVAKRGMKLEIPDGIVLENKEIKDVADI 641
SIPSI+ LDSLKV GDVWFG+ I LKGKV++ AK G+KLEIPD V+ENK I D+
Sbjct: 412 SIPSIVELDSLKVSGDVWFGSSIVLKGKVTVAAKSGVKLEIPDRAVVENKNINGPEDL 469
>pdb|2ICX|A Chain A, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Utp
pdb|2ICX|B Chain B, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Utp
pdb|2ICY|A Chain A, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Udp- Glucose
pdb|2ICY|B Chain B, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Udp- Glucose
Length = 469
Score = 382 bits (981), Expect = e-106, Method: Compositional matrix adjust.
Identities = 213/418 (50%), Positives = 277/418 (66%), Gaps = 14/418 (3%)
Query: 236 DEILVVPYESLASISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLD 295
DEI VVPYE + +S+D+AETK LLDKLVV+K NG LGT MG +GPKS IEV++ LT LD
Sbjct: 54 DEI-VVPYEKMTPVSQDVAETKNLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRDGLTFLD 112
Query: 296 LMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQQPHEKSFE 355
L+V Q+E+LN+KYGC VPL+LMN+ THD K++EKY+NS VDIH+ + S+ P + E
Sbjct: 113 LIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNSNVDIHTFNQSKYPRVVADE 172
Query: 356 -------GHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYXXXXXXXXXXXXXXPK 408
G + K+ YP H VF +LM SG LD L QGKEY
Sbjct: 173 FVPWPSKGKTDKEGWYPPG-HGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLT 231
Query: 409 IFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTK-----QSGGKFKF 463
I HLIQN+ EYCMEV P D++ + GK QL++I Q P + +S KFK
Sbjct: 232 ILKHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKI 291
Query: 464 INTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINV 523
NT ++WVNL+AIK+L++ D LK+E + KEV+ +++ TAA +AI+FFD+ IG+NV
Sbjct: 292 FNTNNLWVNLKAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGVNV 351
Query: 524 AQSRYLPVNSTXXXXXXXXXXYTADEGILVQNPARDNPANPSIELGPEFEKVNNFQSRFK 583
+SR+LPV ++ YT +G + +N AR NP+NPSIELGPEF+KV F SRFK
Sbjct: 352 PRSRFLPVKASSDLLLVQSDLYTLVDGFVTRNKARTNPSNPSIELGPEFKKVATFLSRFK 411
Query: 584 SIPSIINLDSLKVEGDVWFGAGITLKGKVSIVAKRGMKLEIPDGIVLENKEIKDVADI 641
SIPSI+ LDSLKV GDVWFG+ I LKGKV++ AK G+KLEIPD V+ENK I D+
Sbjct: 412 SIPSIVELDSLKVSGDVWFGSSIVLKGKVTVAAKSGVKLEIPDRAVVENKNINGPEDL 469
>pdb|3R2W|A Chain A, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|B Chain B, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|C Chain C, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|D Chain D, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R3I|A Chain A, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|B Chain B, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|C Chain C, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|D Chain D, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
Length = 528
Score = 249 bits (635), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 150/417 (35%), Positives = 233/417 (55%), Gaps = 28/417 (6%)
Query: 240 VVPYESLAS--ISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLM 297
+ PYE + + + ++I+ +L+KLVVVK NG LGT+MG GPKS I V+N T LDL
Sbjct: 106 IQPYEKIKARGLPDNISS---VLNKLVVVKLNGGLGTSMGCKGPKSLIGVRNENTFLDLT 162
Query: 298 VDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQQPH------- 350
V Q+E LN Y +VPL+LMN+ T + +K+L+KY++ +V I++ + S+ P
Sbjct: 163 VQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKYNHCRVKIYTFNQSRYPRINKESLL 222
Query: 351 ----EKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYXXXXXXXXXXXXXX 406
+ S+ G + + YP H ++ S SG LD + +GKEY
Sbjct: 223 PVAKDVSYSGEN-TEAWYPPG-HGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATVD 280
Query: 407 PKIFNHLIQ----NQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTK-----QS 457
I NHL+ + E+ MEV D++ + GK +LV+I Q P +S
Sbjct: 281 LYILNHLMNPPNGKRCEFVMEVTNKTRADVKGGTLTQYEGKLRLVEIAQVPKAHVDEFKS 340
Query: 458 GGKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDD-QIISRGTAADSAIQFFD 516
KFK NT ++W++L A+KRL + + + +E ++K ++ +I TA +AI+ F+
Sbjct: 341 VSKFKIFNTNNLWISLAAVKRLQEQNAIDMEIIVNAKTLDGGLNVIQLETAVGAAIKSFE 400
Query: 517 HTIGINVAQSRYLPVNSTXXXXXXXXXXYTADEGILVQNPARDNPANPSIELGPEFEKVN 576
+++GINV +SR+LPV +T Y+ + G L + R+ P P ++LG F KV
Sbjct: 401 NSLGINVPRSRFLPVKTTSDLLLVMSNLYSLNAGSLTMSEKREFPTVPLVKLGSSFTKVQ 460
Query: 577 NFQSRFKSIPSIINLDSLKVEGDVWFGAGITLKGKVSIVAKRGMKLEIPDGIVLENK 633
++ RF+SIP ++ LD L V GDV FG ++LKG V I+A G +++IP G VLENK
Sbjct: 461 DYLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANHGDRIDIPPGAVLENK 517
>pdb|2I5K|A Chain A, Crystal Structure Of Ugp1p
pdb|2I5K|B Chain B, Crystal Structure Of Ugp1p
Length = 488
Score = 238 bits (606), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 148/409 (36%), Positives = 225/409 (55%), Gaps = 22/409 (5%)
Query: 240 VVPYESLASISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVD 299
VV YE ++ E+++ L KL V+K NG LGT+MG GPKS IEV+ T LDL V
Sbjct: 74 VVKYEIISQQPENVSN----LSKLAVLKLNGGLGTSMGCVGPKSVIEVREGNTFLDLSVR 129
Query: 300 QVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQQP--HEKSF--- 354
Q+E LN +Y +VPLLLMN+ T + +++KYS +++ I S + S+ P ++ S
Sbjct: 130 QIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSANRIRIRSFNQSRFPRVYKDSLLPV 189
Query: 355 --EGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYXXXXXXXXXXXXXXPKIFNH 412
E S D YP H +F SL SG LD L+ QG+E KI NH
Sbjct: 190 PTEYDSPLDAWYPPG-HGDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLKILNH 248
Query: 413 LIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTK-----QSGGKFKFINTR 467
+I+ EY ME+ D++ + G+ +L+++ Q P + ++ KF NT
Sbjct: 249 MIETGAEYIMELTDKTRADVKGGTLISYDGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTN 308
Query: 468 SMWVNLRAIKRLIDTDELKVENFSSSKEVNDD----QIISRGTAADSAIQFFDHTIGINV 523
++W+NL+A+KRLI++ L++E + K + D ++ TA +AI+ FD G+ V
Sbjct: 309 NLWINLKAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQLETACGAAIRHFDGAHGVVV 368
Query: 524 AQSRYLPVNSTXXXXXXXXXXYTADEGILVQNPARDNPANPSIELGPEFEKVNNFQSRFK 583
+SR+LPV + + + G L +P+R P NP I+LG F+KV+ F +R
Sbjct: 369 PRSRFLPVKTCSDLLLVKSDLFRLEHGSLKLDPSRFGP-NPLIKLGSHFKKVSGFNARIP 427
Query: 584 SIPSIINLDSLKVEGDVWFGAGITLKGKVSIVAKRGMKLEIPDGIVLEN 632
IP I+ LD L + G+V+ G +TL+G V IV G K++IP+G +LEN
Sbjct: 428 HIPKIVELDHLTITGNVFLGKDVTLRGTVIIVCSDGHKIDIPNGSILEN 476
>pdb|3GUE|A Chain A, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
pdb|3GUE|B Chain B, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
Length = 484
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 124/435 (28%), Positives = 194/435 (44%), Gaps = 48/435 (11%)
Query: 240 VVPYESLASIS--EDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLM 297
+ P ESL + E E LL + VV+K NG LGT MG +GPKS ++VKN T LD
Sbjct: 52 ISPVESLPFLQGIETKGENTALLRQAVVLKLNGGLGTGMGLNGPKSLLQVKNGQTFLDFT 111
Query: 298 VDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSN-SKVDIHSLSLSQQPHEKSFEG 356
Q+E CNVP +LMN+ T + L KY +V + L Q K
Sbjct: 112 ALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRKYPTLYEVFDSDIELMQNRVPK---- 167
Query: 357 HSRKDKLYPSS------------DHSVVFLSLMKSGTLDLLLVQGKEYXXXXXXXXXXXX 404
R+D +P + H V+ L SG LD LL +G Y
Sbjct: 168 -IRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGAT 226
Query: 405 XXPKIFNHLIQNQIEYCMEVAPVPSIDLRNS------LINLRPG----KFQLVDITQNPT 454
++ +++ + Q+ + MEV D + +I+ G +F L + Q P
Sbjct: 227 LDVRLLDYMHEKQLGFLMEVCRRTESDKKGGHLAYKDVIDETTGQTRRRFVLRESAQCPK 286
Query: 455 K-----QSGGKFKFINTRSMWVNLRAIKRLIDTD--ELKVENFSSSKEVN--DDQ---II 502
+ Q+ K F NT ++W+NL +K+++D L++ + K VN D Q +
Sbjct: 287 EDEDSFQNIAKHCFFNTNNIWINLMELKKMMDEQLGVLRLPVMRNPKTVNPQDSQSTKVY 346
Query: 503 SRGTAADSAIQFFDHTIGINVAQSRYLPVNSTXXXXXXXXXXY--TADEGILVQNPARDN 560
A +AI FD + + V + R+ PV + Y T D+ +++
Sbjct: 347 QLEVAMGAAISLFDRSEAVVVPRERFAPVKTCSDLLALRSDAYQVTEDQRLVLCEERNGK 406
Query: 561 PANPSIEL-GPEFEKVNNFQSRFK-SIPSIINLDSLKVEGDVWFGAGITLKGKVSIVAKR 618
P P+I+L G ++ ++ F+ K +PS+ SL V G V FGA ++++G V I +
Sbjct: 407 P--PAIDLDGEHYKMIDGFEKLVKGGVPSLRQCTSLTVRGLVEFGADVSVRGNVVIKNLK 464
Query: 619 GMKLEIPDGIVLENK 633
L I G VL+N+
Sbjct: 465 EEPLIIGSGRVLDNE 479
>pdb|1I94|B Chain B, Crystal Structures Of The Small Ribosomal Subunit With
Tetracycline, Edeine And If3
pdb|1I95|B Chain B, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Edeine
pdb|1I96|B Chain B, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With The Translation
Initiation Factor If3 (C-Terminal Domain)
pdb|1I97|B Chain B, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Tetracycline
pdb|2ZM6|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit
Length = 255
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 97/217 (44%), Gaps = 45/217 (20%)
Query: 5 SIIIQKLLSTNAHLG--RRVAAHHFKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLAR 62
I +++LL H G R+ F +Y Y RN + IID KT+ L FI LA
Sbjct: 3 EITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAM 62
Query: 63 QRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTN---------------- 106
+ +FV T +IV ++ G P +N W +GG LTN
Sbjct: 63 RGGTILFVGTKKQAQDIVRMEAERAGM--PYVNQRW-LGGMLTNFKTISQRVHRLEELEA 119
Query: 107 -SSSPK-KFRSRNKKIRFGPT---------------KLPDCVVVLDTERKSSVIMEAAKL 149
+SP+ + R + +++R +LPD + V+D +++ + EA KL
Sbjct: 120 LFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKL 179
Query: 150 QVPIVALVDSSMPLDVYSKITYPVPGND----SVQFV 182
+P++AL D+ D+ + Y +PGND S+Q +
Sbjct: 180 FIPVIALADTDSDPDL---VDYIIPGNDDAIRSIQLI 213
>pdb|1FJG|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotics Streptomycin,
Spectinomycin, And Paromomycin
pdb|1HR0|B Chain B, Crystal Structure Of Initiation Factor If1 Bound To The
30s Ribosomal Subunit
pdb|1HNW|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Tetracycline
pdb|1HNX|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Pactamycin
pdb|1HNZ|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Hygromycin B
pdb|1GIX|E Chain E, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1gix, Contains The 30s Ribosome Subunit,
Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is
In The File 1giy
pdb|1IBK|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotic Paromomycin
pdb|1IBL|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site And With The Antibiotic Paromomycin
pdb|1IBM|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site
pdb|1JGO|E Chain E, The Path Of Messenger Rna Through The Ribosome. This File,
1jgo, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGP|E Chain E, The Path Of Messenger Rna Through The Ribosome. This File,
1jgp, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGQ|E Chain E, The Path Of Messenger Rna Through The Ribosome. This File,
1jgq, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1J5E|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit
pdb|1N32|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Bound To Codon And Near-Cognate Transfer Rna
Anticodon Stem-Loop Mismatched At The First Codon
Position At The A Site With Paromomycin
pdb|1N33|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Bound To Codon And Near-Cognate Transfer Rna
Anticodon Stem-Loop Mismatched At The Second Codon
Position At The A Site With Paromomycin
pdb|1N34|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In The Presence Of Codon And
Crystallographically Disordered Near-Cognate Transfer
Rna Anticodon Stem-Loop Mismatched At The First Codon
Position
pdb|1N36|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In The Presence Of Crystallographically
Disordered Codon And Near-cognate Transfer Rna Anticodon
Stem-loop Mismatched At The Second Codon Position
pdb|1ML5|E Chain E, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
pdb|1XMO|B Chain B, Crystal Structure Of Mnm5u34t6a37-Trnalysuuu Complexed
With Aag-Mrna In The Decoding Center
pdb|1XMQ|B Chain B, Crystal Structure Of T6a37-Asllysuuu Aaa-Mrna Bound To The
Decoding Center
pdb|1XNQ|B Chain B, Structure Of An Inosine-Adenine Wobble Base Pair Complex
In The Context Of The Decoding Center
pdb|1XNR|B Chain B, Crystal Structure Of An Inosine-Cytosine Wobble Base Pair
In The Context Of The Decoding Center
pdb|1YL4|E Chain E, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. 30s Subunit. The Coordinates For The 50s Subunit
Are In The Pdb Entry 1yl3
pdb|2B64|B Chain B, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1
From A Crystal Structure Of The Whole Ribosomal Complex.
This File Contains The 30s Subunit, Trnas, Mrna And
Release Factor Rf1 From A Crystal Structure Of The Whole
Ribosomal Complex". The Entire Crystal Structure
Contains One 70s Ribosome, Trnas, Mrna And Release
Factor Rf1 And Is Described In Remark 400.
pdb|2B9M|B Chain B, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2
From A Crystal Structure Of The Whole Ribosomal Complex.
This File Contains The 30s Ribosomal Subunit, Trnas,
Mrna And Release Factor Rf2 From A Crystal Structure Of
The Whole Ribosomal Complex". The Entire Crystal
Structure Contains One 70s Ribosome, Trnas, Mrna And
Release Factor Rf2 And Is Described In Remark 400.
pdb|2B9O|B Chain B, 30s Ribosomal Subunit, Trnas And Mrna From A Crystal
Structure Of The Whole Ribosomal Complex With A Stop
Codon In The A-Site. This File Contains The 30s Subunit,
Trnas And Mrna From A Crystal Structure Of The Whole
Ribosomal Complex With A Stop Codon In The A-Site And Is
Described In Remark 400.
pdb|2F4V|B Chain B, 30s Ribosome + Designer Antibiotic
pdb|2HHH|B Chain B, Crystal Structure Of Kasugamycin Bound To The 30s
Ribosomal Subunit
pdb|2J00|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 1 Of 4).
This File Contains The 30s Subunit, Mrna, A-, P- And
E-Site Trnas And Paromomycin For Molecule I.
pdb|2J02|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 3 Of 4)
This File Contains The 30s Subunit, Mrna, A-, P- And
E-Site Trnas And Paromomycin For Molecule Ii.
pdb|2HGI|E Chain E, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgi Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgj.
pdb|2HGP|E Chain E, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgp Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgq.
pdb|2HGR|E Chain E, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgr Contains 30s
Ribosomal Subunit. The 50s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgu.
pdb|2OW8|CC Chain c, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
2ow8, Contains The 30s Ribosome Subunit, Two Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File
1vsa.
pdb|2UU9|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-asl With Cmo5u In
Position 34 Bound To An Mrna With A Gug-codon In The
A-site And Paromomycin.
pdb|2UUA|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-Asl With Cmo5u In
Position 34 Bound To An Mrna With A Guc-Codon In The
A-Site And Paromomycin.
pdb|2UUB|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-Asl With Cmo5u In
Position 34 Bound To An Mrna With A Guu-Codon In The
A-Site And Paromomycin.
pdb|2UUC|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-asl With Cmo5u In
Position 34 Bound To An Mrna With A Gua-codon In The
A-site And Paromomycin.
pdb|2UXC|B Chain B, Crystal Structure Of An Extended Trna Anticodon Stem Loop
In Complex With Its Cognate Mrna Ucgu In The Context Of
The Thermus Thermophilus 30s Subunit.
pdb|2UXB|B Chain B, Crystal Structure Of An Extended Trna Anticodon Stem Loop
In Complex With Its Cognate Mrna Gggu In The Context Of
The Thermus Thermophilus 30s Subunit.
pdb|2V46|B Chain B, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 1 Of 4). This File Contains The 30s
Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For
Molecule 1.
pdb|2V48|B Chain B, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 3 Of 4). This File Contains The 30s
Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For
Molecule 2.
pdb|2UXD|B Chain B, Crystal Structure Of An Extended Trna Anticodon Stem Loop
In Complex With Its Cognate Mrna Cggg In The Context Of
The Thermus Thermophilus 30s Subunit.
pdb|2QNH|CC Chain c, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 2qnh, Contains The 30s
Ribosome Subunit, Two Trna, And Mrna Molecules. 50s
Ribosome Subunit Is In The File 1vsp.
pdb|2OM7|N Chain N, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2VQE|B Chain B, Modified Uridines With C5-methylene Substituents At The
First Position Of The Trna Anticodon Stabilize U-g
Wobble Pairing During Decoding
pdb|2VQF|B Chain B, Modified Uridines With C5-Methylene Substituents At The
First Position Of The Trna Anticodon Stabilize U-G
Wobble Pairing During Decoding
pdb|3D5A|B Chain B, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 30s Subunit, Release
Factor 1 (Rf1), Two Trna, And Mrna Molecules Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
pdb|3D5C|B Chain B, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 30s Subunit, Release
Factor 1 (Rf1), Two Trna, And Mrna Molecules Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|3F1E|B Chain B, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
30s Subunit, Rf2, Two Trna, And Mrna Molecules Of One
70s Ribosome. The Entire Crystal Structure Contains Two
70s Ribosomes As Described In Remark 400.
pdb|3F1G|B Chain B, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
30s Subunit, Rf2, Two Trna, And Mrna Molecules Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|2WDG|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 30s Subunit A-,P-, And E-Site Trnas And
Paromomycin For Molecule I.
pdb|2WDH|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 30s Subunit A-,P-, And E-Site Trnas And
Paromomycin For Molecule Ii.
pdb|2WDK|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 30s
Subunit A-,P-, And E-Site Trnas And Paromomycin For
Molecule I.
pdb|2WDM|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 30s
Subunit A-,P-, And E-Site Trnas And Paromomycin For
Molecule Ii.
pdb|2WH1|B Chain B, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|2WH3|B Chain B, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome). This File Contains The
30s Subunit.
pdb|3HUW|B Chain B, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 30s Subunit, Mrna, P-Site Trna And Ef-P For
Molecule I.
pdb|3HUY|B Chain B, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 30s Subunit, Mrna, P-Site Trna And Ef-P For
Molecule Ii.
pdb|2WRI|B Chain B, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|B Chain B, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2WRN|B Chain B, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|B Chain B, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4).
pdb|3KIQ|BB Chain b, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 1 Of 4)
pdb|3KIS|BB Chain b, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 3 Of 4)
pdb|3KIU|BB Chain b, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 1 Of 4)
pdb|3KIX|BB Chain b, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 3 Of 4)
pdb|3KNH|B Chain B, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 30s Subunit For Molecule I
pdb|3KNJ|B Chain B, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 30s Subunit For Molecule Ii'
pdb|3KNL|B Chain B, The Structures Of Capreomycin Bound To The 70s Ribosome.
This File Contains The 30s Subunit For Molecule I
pdb|3KNN|B Chain B, The Structures Of Capreomycin Bound To The 70s Ribosome.
This File Contains The 30s Subunit For Molecule Ii
pdb|3I8G|E Chain E, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8g Contains 30s Ribosomal Subnit.The 50s
Ribosomal Can Be Found In Pdb Entry 3i8f. Molecule B In
The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f
(50s).
pdb|3I8H|E Chain E, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8h Contains 30s Ribosomal Subnit. The 50s
Ribosomal Can Be Found In Pdb Entry 3i8i. Molecule A In
The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
(30s).
pdb|3I9B|E Chain E, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9b Contains 30s Ribosomal Subunit Of Molecule B.
The 50s Subunit Can Be Found In Pdb Entry 3i9c. Molecule
A In The S Asymmetric Unit Is Deposited As 3i9d (30s)
And 3i9e (50s)
pdb|3I9D|E Chain E, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9d Contains 30s Ribosomal Subunit Of Molecule A.
The 50s Subunit Can Be Found In Pdb Entry 3i9e. Molecule
B In The S Asymmetric Unit Is Deposited As 3i9b (30s)
And 3i9c (50s)
pdb|2X9R|B Chain B, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9T|B Chain B, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2XFZ|B Chain B, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 1 Of 4)
pdb|2XG1|B Chain B, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 3 Of 4)
pdb|3OTO|B Chain B, Crystal Structure Of The 30s Ribosomal Subunit From A Ksga
Mutant Of Thermus Thermophilus (Hb8)
pdb|3OGE|B Chain B, Structure Of The Thermus Thermophilus Ribosome Complexed
With Chloramphenicol. This File Contains The 30s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3OGY|B Chain B, Structure Of The Thermus Thermophilus Ribosome Complexed
With Chloramphenicol. This File Contains The 30s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3OHC|B Chain B, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 30s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHD|B Chain B, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 30s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHY|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI0|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI2|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI4|B Chain B, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2XQD|B Chain B, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
pdb|2XSY|B Chain B, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|B Chain B, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|2Y0U|B Chain B, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|B Chain B, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0Y|B Chain B, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|B Chain B, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|B Chain B, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|B Chain B, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|B Chain B, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|B Chain B, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|3ZVO|B Chain B, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3T1H|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Human Anti-Codon Stem Loop
(Hasl) Of Transfer Rna Lysine 3 (Trnalys3) Bound To An
Mrna With An Aaa-Codon In The A-Site And Paromomycin
pdb|3T1Y|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Human Anti-Codon Stem Loop
(Hasl) Of Transfer Rna Lysine 3 (Trnalys3) Bound To An
Mrna With An Aag-Codon In The A-Site And Paromomycin
pdb|3UXS|B Chain B, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UXT|B Chain B, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.'
pdb|3TVF|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3TVG|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3UYD|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UYF|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UZ3|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin.
pdb|3UZ4|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin.
pdb|3UZ6|E Chain E, Structure Analysis Of Ribosomal Decoding. This Entry
Contains The 30s Ribosomal Subunit Of The First 70s
Molecule In The Asymmetric Unit For The Cognate Trna-Tyr
Complex
pdb|3UZ7|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZG|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
pdb|3UZI|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
pdb|3UZL|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
pdb|3UZM|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-cognate
Trna-tyr Complex With Paromomycin
pdb|4ABR|B Chain B, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
pdb|4DH9|B Chain B, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|4DHB|B Chain B, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|3V22|B Chain B, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Rmf Of The 1st Ribosome In The Asu
pdb|3V24|B Chain B, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Rmf Of The 2nd Ribosome In The Asu
pdb|3V26|B Chain B, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Hpf Of The 1st Ribosome In The Asu
pdb|3V28|B Chain B, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Hpf Of The 2nd Ribosome In The Asu
pdb|3V2C|B Chain B, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Yfia Of The 1st Ribosome In The Asu
pdb|3V2E|B Chain B, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Yfia Of The 2nd Ribosome In The Asu
pdb|4AQY|B Chain B, Structure Of Ribosome-Apramycin Complexes
pdb|4DR1|B Chain B, Crystal Structure Of The Apo 30s Ribosomal Subunit From
Thermus Thermophilus (hb8)
pdb|4DR2|B Chain B, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Multiple Copies Of Paromomycin
Molecules Bound
pdb|4DR3|B Chain B, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Streptomycin Bound
pdb|4DR4|B Chain B, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Cognate Transfer Rna
Anticodon Stem-loop And Multiple Copies Of Paromomycin
Molecules Bound
pdb|4DR5|B Chain B, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Crystallographically
Disordered Cognate Transfer Rna Anticodon Stem-loop And
Streptomycin Bound
pdb|4DR6|B Chain B, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Near-cognate Transfer Rna
Anticodon Stem-loop Mismatched At The First Codon
Position And Streptomycin Bound
pdb|4DR7|B Chain B, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Crystallographically
Disordered Near-cognate Transfer Rna Anticodon Stem-loop
Mismatched At The Second Codon Position, And
Streptomycin Bound
pdb|4G5K|E Chain E, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 30s Subunit Of Molecule A.
pdb|4G5M|E Chain E, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 30s Subunit Of Molecule B.
pdb|4G5T|E Chain E, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 30s Subunit Of Molecule A.
pdb|4G5V|E Chain E, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 30s Subunit Of Molecule B.
pdb|4DUY|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U13c
pdb|4DUZ|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U13c, Bound
With Streptomycin
pdb|4DV0|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U20g
pdb|4DV1|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U20g, Bound
With Streptomycin
pdb|4DV2|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, C912a
pdb|4DV3|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, C912a, Bound
With Streptomycin
pdb|4DV4|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A914g
pdb|4DV5|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A914g, Bound
With Streptomycin
pdb|4DV6|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A915g
pdb|4DV7|B Chain B, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A915g, Bound
With Streptomycin
Length = 256
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 97/217 (44%), Gaps = 45/217 (20%)
Query: 5 SIIIQKLLSTNAHLG--RRVAAHHFKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLAR 62
I +++LL H G R+ F +Y Y RN + IID KT+ L FI LA
Sbjct: 4 EITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAM 63
Query: 63 QRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTN---------------- 106
+ +FV T +IV ++ G P +N W +GG LTN
Sbjct: 64 RGGTILFVGTKKQAQDIVRMEAERAGM--PYVNQRW-LGGMLTNFKTISQRVHRLEELEA 120
Query: 107 -SSSPK-KFRSRNKKIRFGPT---------------KLPDCVVVLDTERKSSVIMEAAKL 149
+SP+ + R + +++R +LPD + V+D +++ + EA KL
Sbjct: 121 LFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKL 180
Query: 150 QVPIVALVDSSMPLDVYSKITYPVPGND----SVQFV 182
+P++AL D+ D+ + Y +PGND S+Q +
Sbjct: 181 FIPVIALADTDSDPDL---VDYIIPGNDDAIRSIQLI 214
>pdb|2E5L|B Chain B, A Snapshot Of The 30s Ribosomal Subunit Capturing Mrna Via
The Shine- Dalgarno Interaction
Length = 227
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 97/217 (44%), Gaps = 45/217 (20%)
Query: 5 SIIIQKLLSTNAHLG--RRVAAHHFKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLAR 62
I +++LL H G R+ F +Y Y RN + IID KT+ L FI LA
Sbjct: 3 EITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAM 62
Query: 63 QRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTN---------------- 106
+ +FV T +IV ++ G P +N W +GG LTN
Sbjct: 63 RGGTILFVGTKKQAQDIVRMEAERAGM--PYVNQRW-LGGMLTNFKTISQRVHRLEELEA 119
Query: 107 -SSSPK-KFRSRNKKIRFGPT---------------KLPDCVVVLDTERKSSVIMEAAKL 149
+SP+ + R + +++R +LPD + V+D +++ + EA KL
Sbjct: 120 LFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKL 179
Query: 150 QVPIVALVDSSMPLDVYSKITYPVPGND----SVQFV 182
+P++AL D+ D+ + Y +PGND S+Q +
Sbjct: 180 FIPVIALADTDSDPDL---VDYIIPGNDDAIRSIQLI 213
>pdb|3FIC|B Chain B, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
Length = 235
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 96/214 (44%), Gaps = 45/214 (21%)
Query: 8 IQKLLSTNAHLG--RRVAAHHFKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLARQRA 65
+++LL H G R+ F +Y Y RN + IID KT+ L FI LA +
Sbjct: 1 VKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGG 60
Query: 66 AFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTN-----------------SS 108
+FV T +IV ++ G P +N W +GG LTN +
Sbjct: 61 TILFVGTKKQAQDIVRMEAERAGM--PYVNQRW-LGGMLTNFKTISQRVHRLEELEALFA 117
Query: 109 SPK-KFRSRNKKIRFGPT---------------KLPDCVVVLDTERKSSVIMEAAKLQVP 152
SP+ + R + +++R +LPD + V+D +++ + EA KL +P
Sbjct: 118 SPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIP 177
Query: 153 IVALVDSSMPLDVYSKITYPVPGND----SVQFV 182
++AL D+ D+ + Y +PGND S+Q +
Sbjct: 178 VIALADTDSDPDL---VDYIIPGNDDAIRSIQLI 208
>pdb|1PNS|B Chain B, Crystal Structure Of A Streptomycin Dependent Ribosome
From E. Coli, 30s Subunit Of 70s Ribosome. This File,
1pns, Contains The 30s Subunit, Two Trnas, And One Mrna
Molecule. The 50s Ribosomal Subunit Is In File 1pnu.
pdb|1PNX|B Chain B, Crystal Structure Of The Wild Type Ribosome From E. Coli,
30s Subunit Of 70s Ribosome. This File, 1pnx, Contains
Only Molecules Of The 30s Ribosomal Subunit. The 50s
Subunit Is In The Pdb File 1pny.
pdb|1VOQ|B Chain B, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOS|B Chain B, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOV|B Chain B, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOX|B Chain B, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOZ|B Chain B, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|3MR8|B Chain B, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3mr8 Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 3ms1.
Molecule B In The Same Asymmetric Unit Is Deposited As
3mrz (50s) And 3ms0 (30s).
pdb|3MS0|B Chain B, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3ms0 Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 3mrz.
Molecule A In The Same Asymmetric Unit Is Deposited As
3mr8 (30s) And 3ms1 (50s).
pdb|3PYN|B Chain B, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 30s Subunit Of The First 70s Ribosome.
pdb|3PYQ|B Chain B, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 30s Subunit Of The Second 70s
Ribosome.
pdb|3PYS|B Chain B, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 30s Subunit Of The First 70s Ribosome.
pdb|3PYU|B Chain B, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 30s Subunit Of The Second 70s Ribosome
Length = 234
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 96/214 (44%), Gaps = 45/214 (21%)
Query: 8 IQKLLSTNAHLG--RRVAAHHFKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLARQRA 65
+++LL H G R+ F +Y Y RN + IID KT+ L FI LA +
Sbjct: 1 VKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGG 60
Query: 66 AFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTN-----------------SS 108
+FV T +IV ++ G P +N W +GG LTN +
Sbjct: 61 TILFVGTKKQAQDIVRMEAERAGM--PYVNQRW-LGGMLTNFKTISQRVHRLEELEALFA 117
Query: 109 SPK-KFRSRNKKIRFGPT---------------KLPDCVVVLDTERKSSVIMEAAKLQVP 152
SP+ + R + +++R +LPD + V+D +++ + EA KL +P
Sbjct: 118 SPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIP 177
Query: 153 IVALVDSSMPLDVYSKITYPVPGND----SVQFV 182
++AL D+ D+ + Y +PGND S+Q +
Sbjct: 178 VIALADTDSDPDL---VDYIIPGNDDAIRSIQLI 208
>pdb|1X18|E Chain E, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 231
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 92/211 (43%), Gaps = 42/211 (19%)
Query: 8 IQKLLSTNAHLG--RRVAAHHFKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLARQRA 65
+++LL H G R+ F +Y Y RN + IID KT+ L FI LA +
Sbjct: 1 VKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGG 60
Query: 66 AFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTN------------------- 106
+FV T +IV ++ G P +N W +GG LTN
Sbjct: 61 TILFVGTKKQAQDIVRMEAERAGM--PYVNQRW-LGGMLTNFKTIQRVHRLEELEALFAS 117
Query: 107 ---SSSPKKFRSRNKKIRFGP--------TKLPDCVVVLDTERKSSVIMEAAKLQVPIVA 155
PKK + ++ R +LPD + V+D +++ + EA KL +P++A
Sbjct: 118 PEIEERPKKEQRLHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIA 177
Query: 156 LVDSSMPLDVYSKITYPVPGND----SVQFV 182
L D+ D+ + Y +PGND S+Q +
Sbjct: 178 LADTDSDPDL---VDYIIPGNDDAIRSIQLI 205
>pdb|1VS5|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|1VS7|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|3E1A|B Chain B, Structure Of The 30s Subunit And The Trnas Of E. Coli
Ribosome In Pre- Accommodation State
pdb|3E1C|B Chain B, Structure Of The 30s Subunit And The Trnas Of E. Coli
Ribosome In Post-Accommodation State
pdb|3I1M|B Chain B, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1O|B Chain B, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1Q|B Chain B, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1S|B Chain B, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1Z|B Chain B, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I21|B Chain B, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3KC4|B Chain B, Ribosome-Secy Complex. This Entry 3kc4 Contains 30s
Ribosomal Subnit. The 50s Ribosomal Subunit Can Be Found
In Pdb Entry 3kcr
pdb|3OR9|B Chain B, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 30s Subunit Of The First
70s Ribosome.
pdb|3ORA|B Chain B, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
pdb|3IZV|F Chain F, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|F Chain F, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
pdb|3SFS|B Chain B, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
pdb|3UOQ|B Chain B, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
pdb|4GAQ|B Chain B, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
pdb|4GAS|B Chain B, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
Length = 241
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 42/226 (18%)
Query: 3 LHSIIIQKLLSTNAHLGR--RVAAHHFKQYTYGFRNAMAIIDSDKTLICLRNACHFISLL 60
+ ++ ++ +L H G R K + +G RN + II+ +KT+ A ++ +
Sbjct: 1 MATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKI 60
Query: 61 ARQRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKI 120
A ++ +FV T E V + C +N W +GG LTN + ++ R K +
Sbjct: 61 ASRKGKILFVGTKRAASEAVKDAA--LSCDQFFVNHRW-LGGMLTNWKTVRQSIKRLKDL 117
Query: 121 R-----------------------------FGPTK----LPDCVVVLDTERKSSVIMEAA 147
G K LPD + V+D + + I EA
Sbjct: 118 ETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEAN 177
Query: 148 KLQVPIVALVDSSMPLDVYSKITYPVPGN-DSVQFVYLLCNMITKT 192
L +P+ A+VD++ D + + +PGN D+++ V L + T
Sbjct: 178 NLGIPVFAIVDTNSDPD---GVDFVIPGNDDAIRAVTLYLGAVAAT 220
>pdb|1P87|B Chain B, Real Space Refined Coordinates Of The 30s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The
Initiation-Like State Of E. Coli 70s Ribosome
pdb|2AVY|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2AW7|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 30s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes And Is
Described In Remark 400.
pdb|2I2P|B Chain B, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2I2U|B Chain B, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2QOU|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 30s Subunit Of The First 70s Ribosome,
With Spectinomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|2QOW|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 30s Subunit Of The Second 70s
Ribosome, With Spectinomycin Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2QOY|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 30s Subunit Of The
First 70s Ribosome, With Spectinomycin And Neomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QP0|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome, With Spectinomycin And Neomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QAL|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Neomycin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QAN|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Neomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QB9|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Gentamicin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QBB|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Gentamicin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBD|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 30s Subunit Of The
First 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBF|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 30s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBH|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 30s
Subunit Of The First 70s Ribosome, With Gentamicin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2QBJ|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 30s
Subunit Of The Second 70s Ribosome, With Gentamicin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2Z4K|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
30s Subunit Of The First 70s Ribosome, With Paromomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2Z4M|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
30s Subunit Of The Second 70s Ribosome, With Paromomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2VHO|B Chain B, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 3 Of 4)
pdb|2VHP|B Chain B, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 4 Of 4)
pdb|3DF1|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Hygromycin B Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3DF3|B Chain B, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Hygromycin B Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3J00|B Chain B, Structure Of The Ribosome-Secye Complex In The Membrane
Environment
pdb|4ADV|B Chain B, Structure Of The E. Coli Methyltransferase Ksga Bound To
The E. Coli 30s Ribosomal Subunit
pdb|3J0U|E Chain E, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class2 Of The Six
Classes)
pdb|3J0V|E Chain E, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 4a Of The Six
Classes)
pdb|3J0X|E Chain E, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 4b Of The Six
Classes)
pdb|3J0Z|E Chain E, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 5 Of The Six
Classes)
pdb|3J10|E Chain E, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 6 Of The Six
Classes)
pdb|3J13|D Chain D, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 3 Of The Six
Classes)
Length = 240
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 42/224 (18%)
Query: 5 SIIIQKLLSTNAHLGR--RVAAHHFKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLAR 62
++ ++ +L H G R K + +G RN + II+ +KT+ A ++ +A
Sbjct: 2 TVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIAS 61
Query: 63 QRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIR- 121
++ +FV T E V + C +N W +GG LTN + ++ R K +
Sbjct: 62 RKGKILFVGTKRAASEAVKDAA--LSCDQFFVNHRW-LGGMLTNWKTVRQSIKRLKDLET 118
Query: 122 ----------------------------FGPTK----LPDCVVVLDTERKSSVIMEAAKL 149
G K LPD + V+D + + I EA L
Sbjct: 119 QSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNL 178
Query: 150 QVPIVALVDSSMPLDVYSKITYPVPGN-DSVQFVYLLCNMITKT 192
+P+ A+VD++ D + + +PGN D+++ V L + T
Sbjct: 179 GIPVFAIVDTNSDPD---GVDFVIPGNDDAIRAVTLYLGAVAAT 219
>pdb|2GY9|B Chain B, Structure Of The 30s Subunit Of A Pre-Translocational E.
Coli Ribosome Obtained By Fitting Atomic Models For Rna
And Protein Components Into Cryo-Em Map Emd-1056
pdb|2GYB|B Chain B, Structure Of The 30s Subunit Of A Secm-Stalled E. Coli
Ribosome Complex Obtained By Fitting Atomic Models For
Rna And Protein Components Into Cryo-Em Map Emd-1143
Length = 236
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 42/221 (19%)
Query: 8 IQKLLSTNAHLGR--RVAAHHFKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLARQRA 65
++ +L H G R K + +G RN + II+ +KT+ A ++ +A ++
Sbjct: 1 MRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKG 60
Query: 66 AFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIR---- 121
+FV T E V + C +N W +GG LTN + ++ R K +
Sbjct: 61 KILFVGTKRAASEAVKDAA--LSCDQFFVNHRW-LGGMLTNWKTVRQSIKRLKDLETQSQ 117
Query: 122 -------------------------FGPTK----LPDCVVVLDTERKSSVIMEAAKLQVP 152
G K LPD + V+D + + I EA L +P
Sbjct: 118 DGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIP 177
Query: 153 IVALVDSSMPLDVYSKITYPVPGN-DSVQFVYLLCNMITKT 192
+ A+VD++ D + + +PGN D+++ V L + T
Sbjct: 178 VFAIVDTNSDPD---GVDFVIPGNDDAIRAVTLYLGAVAAT 215
>pdb|3FIH|B Chain B, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|2WWL|B Chain B, E.Coli 70s Ribosome Stalled During Translation Of Tnac
Leader Peptide. This File Contains The 30s, The P-Site
Trna And The Tnac Leader Peptide (Part 1 Of 2).
pdb|3OFO|B Chain B, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
pdb|3OFP|B Chain B, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
pdb|3OFA|B Chain B, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 30s Subunit Of
The First 70s Ribosome.
pdb|3OFB|B Chain B, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 30s Subunit Of
The Second 70s Ribosome.
pdb|3OFX|B Chain B, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
pdb|3OFY|B Chain B, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome
pdb|3OAQ|B Chain B, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
pdb|3OAR|B Chain B, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
pdb|2YKR|B Chain B, 30s Ribosomal Subunit With Rsga Bound In The Presence Of
Gmppnp
pdb|4A2I|B Chain B, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
pdb|3J18|B Chain B, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
pdb|4GD1|B Chain B, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
pdb|4GD2|B Chain B, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
Length = 218
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 42/218 (19%)
Query: 11 LLSTNAHLGR--RVAAHHFKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLARQRAAFM 68
+L H G R K + +G RN + II+ +KT+ A ++ +A ++ +
Sbjct: 1 MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKIL 60
Query: 69 FVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIR------- 121
FV T E V + C +N W +GG LTN + ++ R K +
Sbjct: 61 FVGTKRAASEAVKDAA--LSCDQFFVNHRW-LGGMLTNWKTVRQSIKRLKDLETQSQDGT 117
Query: 122 ----------------------FGPTK----LPDCVVVLDTERKSSVIMEAAKLQVPIVA 155
G K LPD + V+D + + I EA L +P+ A
Sbjct: 118 FDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFA 177
Query: 156 LVDSSMPLDVYSKITYPVPGN-DSVQFVYLLCNMITKT 192
+VD++ D + + +PGN D+++ V L + T
Sbjct: 178 IVDTNSDPD---GVDFVIPGNDDAIRAVTLYLGAVAAT 212
>pdb|2OEF|A Chain A, Open And Closed Structures Of The Udp-Glucose
Pyrophosphorylase From Leishmania Major
pdb|2OEG|A Chain A, Open And Closed Structures Of The Udp-Glucose
Pyrophosphorylase From Leishmania Major
Length = 505
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 103/450 (22%), Positives = 180/450 (40%), Gaps = 51/450 (11%)
Query: 228 TKREIDSKDEILVVPYESLASI-SEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIE 286
+K E S + + P +SL ++ S I +L VV+K NG LGT G K+ +E
Sbjct: 40 SKGETGSIPDSAIXPVDSLDALDSLTIECDNAVLQSTVVLKLNGGLGTGXGLCDAKTLLE 99
Query: 287 VKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLE-KYS------NSKVD 339
VK+ T LD QV+ L ++ L ++ T + L+ +Y +S+V+
Sbjct: 100 VKDGKTFLDFTALQVQYLRQHCSEHLRFXLXDSFNTSASTKSFLKARYPWLYQVFDSEVE 159
Query: 340 IHSLSLS---QQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYXXXX 396
+ + Q E + + + P H ++ +L SG L L+ QG Y
Sbjct: 160 LXQNQVPKILQDTLEPAAWAENPAYEWAPPG-HGDIYTALYGSGKLQELVEQGYRYXFVS 218
Query: 397 XXXXXXXXXXPKIFNHLIQNQIEYCMEVAPVPSIDLRNS-------LINLRPGK------ 443
++ + + +I++ EV D + + + G+
Sbjct: 219 NGDNLGATIDKRVLAYXEKEKIDFLXEVCRRTESDKKGGHLARQTVYVKGKDGQPDAEKR 278
Query: 444 -FQLVDITQNPTK-----QSGGKFKFINTRSMWVNLRAIKRLIDTDE----------LKV 487
L + Q P Q K+ F NT ++W+ L L++T + ++
Sbjct: 279 VLLLRESAQCPKADXESFQDINKYSFFNTNNLWIRLPV---LLETXQEHGGTLPLPVIRN 335
Query: 488 ENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTXXXXXXXXXXY-- 545
E S ++ TA +AI F+ I V +SR+ PV + Y
Sbjct: 336 EKTVDSSNSASPKVYQLETAXGAAIAXFESASAIVVPRSRFAPVKTCADLLALRSDAYVV 395
Query: 546 TADEGILVQNPARDNPANPSIEL-GPEFEKVNNFQSRFK-SIPSIINLDSLKVEGDVWFG 603
T D +++ + +P P ++L ++ N F+ + +PS++ + V+G V FG
Sbjct: 396 TDDFRLVLDDRCHGHP--PVVDLDSAHYKXXNGFEKLVQHGVPSLVECKRVTVKGLVQFG 453
Query: 604 AGITLKGKVSIV-AKRGMKLEIPDGIVLEN 632
AG L G V+I IPDG L +
Sbjct: 454 AGNVLTGTVTIENTDSASAFVIPDGAKLND 483
>pdb|3ZEY|C Chain C, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 277
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 23/182 (12%)
Query: 8 IQKLLSTNAHLGRRVAAHHFKQYTYG-FRNAMAIIDSDKTLICLRNACHFISLLARQRAA 66
+QKLL+ + HLG + ++ K+Y +G + IID T L A I+ A +
Sbjct: 51 VQKLLAMHCHLGTKNSSSAMKKYIHGRTSDGTNIIDIHMTWEKLILAARVIA--AVENPQ 108
Query: 67 FMFVNTNPLFDE-IVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPT 125
+ V + LF + + + +Q +G FL P F ++ +K P
Sbjct: 109 DVTVCSTRLFGQRAIFKFSQLVGT------------SFLGGRFIPGTFTNQIQKKFMQPR 156
Query: 126 KLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPV--PGNDSVQFVY 183
L VV D + EA+ + +P++A D+ PL+ + I P G S+ +Y
Sbjct: 157 VL----VVTDPRTDHQALREASLVNIPVIAFCDTDAPLE-FVDIAIPCNNRGRHSISMMY 211
Query: 184 LL 185
L
Sbjct: 212 WL 213
>pdb|3OH0|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Triphosphate
pdb|3OH1|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Diphosphate-Galacturonic Acid
pdb|3OH2|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'- Diphosphate-Galactose
pdb|3OH3|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'-Diphosphate -Arabinose
pdb|3OH4|A Chain A, Protein Structure Of Usp From L. Major Bound To
Uridine-5'-Diphosphate Glucose
Length = 641
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 254 AETKMLLDKLVVVKFNGALGTNMGFSGPKSA--IEVKNNLTPLDLMVDQVESLNSKYGCN 311
A T ML K V V G LG +G+S K + +E N T L + + + K
Sbjct: 107 AGTAMLC-KTVFVLVAGGLGERLGYSSIKVSLPVETATNTTYLAYYLRWAQRVGGK---E 162
Query: 312 VPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQ 347
VP ++M + +THDR ++L + ++H L Q
Sbjct: 163 VPFVIMTSDDTHDRTLQLLRELQLEVPNLHVLKQGQ 198
>pdb|3OGZ|A Chain A, Protein Structure Of Usp From L. Major In Apo-Form
Length = 630
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 254 AETKMLLDKLVVVKFNGALGTNMGFSGPKSA--IEVKNNLTPLDLMVDQVESLNSKYGCN 311
A T ML K V V G LG +G+S K + +E N T L + + + K
Sbjct: 107 AGTAMLC-KTVFVLVAGGLGERLGYSSIKVSLPVETATNTTYLAYYLRWAQRVGGK---E 162
Query: 312 VPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQ 347
VP ++M + +THDR ++L + ++H L Q
Sbjct: 163 VPFVIMTSDDTHDRTLQLLRELQLEVPNLHVLKQGQ 198
>pdb|3BBN|B Chain B, Homology Model For The Spinach Chloroplast 30s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 231
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 41/208 (19%)
Query: 5 SIIIQKLLSTNAHLGR--RVAAHHFKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLAR 62
+I +++++ H G R Y + II+ +T L AC + +
Sbjct: 3 NINLEEMMEAGVHFGHGTRKWNPRMSPYISAKCKGIHIINLTRTARFLSEACDLVFDASS 62
Query: 63 QRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPK----KFRSRNK 118
+ F+ V T + V + + C+ +N W +GG LTN S+ + KFR
Sbjct: 63 RGKQFLIVGTKNKAADSVARAAIRARCHY--VNKKW-LGGMLTNWSTTETRLHKFRDLRM 119
Query: 119 KIRFGP-----------------------------TKLPDCVVVLDTERKSSVIMEAAKL 149
+ G T LPD V+++D + + + + E L
Sbjct: 120 EQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITL 179
Query: 150 QVPIVALVDSSMPLDVYSKITYPVPGND 177
+P + L+D++ D+ +P ND
Sbjct: 180 GIPTICLIDTNCNPDLAD---ISIPAND 204
>pdb|1EYS|M Chain M, Crystal Structure Of Photosynthetic Reaction Center From A
Thermophilic Bacterium, Thermochromatium Tepidum
Length = 324
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ DQI RGTAA+ A F+ T+G N
Sbjct: 223 LSVSRFGGDREI--DQITHRGTAAEGAALFWRWTMGFN 258
>pdb|1S1H|B Chain B, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i
Length = 185
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 18/155 (11%)
Query: 9 QKLLSTNAHLGRRVAAHHFKQYTYGFR-NAMAIIDSDKTLICLRNACHFISLLARQRAAF 67
Q LL+ N HLG R H + Y + R + + +I+ KT L A I+ +
Sbjct: 2 QLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDV- 60
Query: 68 MFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKL 127
+ +++ VL+ G A G F S + RS K
Sbjct: 61 VAISSRTFGQRAVLKFAAHTG-------ATPIAGRFTPGSFTNYITRS---------FKE 104
Query: 128 PDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMP 162
P V+V D + I EA+ + +P++AL D P
Sbjct: 105 PRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSP 139
>pdb|3JYV|B Chain B, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 193
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 18/155 (11%)
Query: 9 QKLLSTNAHLGRRVAAHHFKQYTYGFR-NAMAIIDSDKTLICLRNACHFISLLARQRAAF 67
Q LL+ N HLG R H + Y + R + + +I+ KT L A I+ +
Sbjct: 7 QLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDV- 65
Query: 68 MFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKL 127
+ +++ VL+ G A G F S + RS K
Sbjct: 66 VAISSRTFGQRAVLKFAAHTG-------ATPIAGRFTPGSFTNYITRS---------FKE 109
Query: 128 PDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMP 162
P V+V D + I EA+ + +P++AL D P
Sbjct: 110 PRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSP 144
>pdb|3IZB|A Chain A, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|A Chain A, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|A Chain A, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|A Chain A, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|A Chain A, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 252
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 18/155 (11%)
Query: 9 QKLLSTNAHLGRRVAAHHFKQYTYGFR-NAMAIIDSDKTLICLRNACHFISLLARQRAAF 67
Q LL+ N HLG R H + Y + R + + +I+ KT L A I+ +
Sbjct: 15 QLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDV- 73
Query: 68 MFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKL 127
+ +++ VL+ G G F S + RS K
Sbjct: 74 VAISSRTFGQRAVLKFAAHTGATP-------IAGRFTPGSFTNYITRS---------FKE 117
Query: 128 PDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMP 162
P V+V D + I EA+ + +P++AL D P
Sbjct: 118 PRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSP 152
>pdb|2XZM|B Chain B, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|B Chain B, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 241
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 128 PDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGNDSVQFVYLLCN 187
P ++V D I EA+ + +P++AL DS PL Y + P N S + + ++
Sbjct: 115 PRVLIVTDPRSDFQAIKEASYVNIPVIALCDSDSPL-AYVDVVIPC-NNRSTESISMIYW 172
Query: 188 MITKTFLVEQKKLGLLKDDEDQRERID 214
MI + + + G L DE+ +D
Sbjct: 173 MIAREVKILR---GELSKDEEWEVMVD 196
>pdb|4HBH|M Chain M, Bacterial Photosynthetic Reaction Center From Rhodobacter
Sphaeroides With Ile M265 Replaced With Asn
Length = 313
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTXXXXXXXXXX 544
L V F +E+ +QI RGTAA+ A F+ T+G N N
Sbjct: 224 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFNATMEG----NHRWAIWMAVLVT 277
Query: 545 YTADEGILVQNPARDN 560
T GIL+ DN
Sbjct: 278 LTGGIGILLSGTVVDN 293
>pdb|3IZ6|A Chain A, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 305
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 22/186 (11%)
Query: 8 IQKLLSTNAHLGRRVAAHHFKQYTYGFR-NAMAIIDSDKTLICLRNACHFISLLARQRAA 66
IQ +L+ + HLG + ++Y Y R + + II+ KT L+ A I + +
Sbjct: 19 IQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQ-D 77
Query: 67 FMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTK 126
+ + P VL+ Q G + + +P F + + F +
Sbjct: 78 IIVQSARPYGQRAVLKFAQYTGAHA------------IAGRHTPGTF-TNQLQTSFSEPR 124
Query: 127 LPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPV--PGNDSVQ-FVY 183
L +++ D I E+A +P +A D+ P+ Y I P G S+ +
Sbjct: 125 L---LILTDPRTDHQPIKESALGNIPTIAFCDTDSPMR-YVDIGIPANNKGKQSIGCLFW 180
Query: 184 LLCNMI 189
LL M+
Sbjct: 181 LLARMV 186
>pdb|4HBJ|M Chain M, Bacterial Photosynthetic Reaction Center From Rhodobacter
Sphaeroides With Ile M265 Replaced With Gln
Length = 313
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINV---AQSRY 528
L V F +E+ +QI RGTAA+ A F+ T+G N Q R+
Sbjct: 224 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFNATMEGQHRW 268
>pdb|3DU3|M Chain M, E(L212)a, D(L213)a, A(M249)y Triple Mutant Structure Of
Photosynthetic Reaction Center
Length = 314
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 224 LAVSRFGGEREL--EQIADRGTAAERAYLFWRWTMGFN 259
>pdb|3J20|B Chain B, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (30s Ribosomal Subunit)
Length = 202
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 128 PDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGND 177
PD ++V D + EA ++ +PIVALVD+ ++ S + +P N+
Sbjct: 112 PDVLIVTDPRADHQAMREAVEIGIPIVALVDTE---NLLSYVDLAIPTNN 158
>pdb|2JIY|M Chain M, Photosynthetic Reaction Center Mutant With Ala M149
Replaced With Trp (Chain M, Am149w)
Length = 308
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 225 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFN 260
>pdb|1KBY|M Chain M, Structure Of Photosynthetic Reaction Center With
Bacteriochlorophyll- Bacteriopheophytin Heterodimer
Length = 307
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 224 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFN 259
>pdb|1DS8|M Chain M, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State With The
Proton Transfer Inhibitor Cd2+
pdb|1DS8|S Chain S, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State With The
Proton Transfer Inhibitor Cd2+
pdb|1DV3|M Chain M, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Separated D+qaqb-State With
The Proton Transfer Inhibitor Cd2+
pdb|1DV3|S Chain S, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Separated D+qaqb-State With
The Proton Transfer Inhibitor Cd2+
pdb|1DV6|M Chain M, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State With The
Proton Transfer Inhibitor Zn2+
pdb|1DV6|S Chain S, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State With The
Proton Transfer Inhibitor Zn2+
pdb|1RVJ|M Chain M, Photosynthetic Reaction Center Double Mutant From
Rhodobacter Sphaeroides With Asp L213 Replaced With Asn
And Arg H177 Replaced With His
Length = 307
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 224 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFN 259
>pdb|1QOV|M Chain M, Photosynthetic Reaction Center Mutant With Ala M260
Replaced With Trp (Chain M, A260w)
Length = 307
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 224 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFN 259
>pdb|1JGW|M Chain M, Photosynthetic Reaction Center Mutant With Thr M 21
Replaced With Leu
Length = 307
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 224 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFN 259
>pdb|4H99|M Chain M, Bacterial Photosynthetic Reaction Center From Rhodobacter
Sphaeroides With Ile M265 Replaced With Thr
Length = 313
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 224 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFN 259
>pdb|2BOZ|M Chain M, Photosynthetic Reaction Center Mutant With Gly M203
Replaced With Leu
Length = 307
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 224 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFN 259
>pdb|1MPS|M Chain M, Photosynthetic Reaction Center Mutant With Phe M 197
Replaced With Arg And Tyr M 177 Replaced With Phe (Chain
M, Y177f, F197r)
Length = 307
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 224 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFN 259
>pdb|3V3Y|M Chain M, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides Strain Rv
pdb|3V3Z|M Chain M, I(L177)h Mutant Structure Of Photosynthetic Reaction
Center From Rhodobacter Sphaeroides
Length = 302
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 224 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFN 259
>pdb|1UMX|M Chain M, Photosynthetic Reaction Center Mutant With Arg M267
Replaced With Leu (Chain M, R267l)
Length = 307
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 224 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFN 259
>pdb|1E6D|M Chain M, Photosynthetic Reaction Center Mutant With Trp M115
Replaced With Phe (Chain M, Wm115f) Phe M197 Replaced
With Arg (Chain M, Fm197r)
Length = 307
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 224 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFN 259
>pdb|1E14|M Chain M, Photosynthetic Reaction Center Mutant With Phe M197
Replaced With Arg (Chain M, Fm197r) And Gly M203
Replaced With Asp (Chain M, Gm203d)
Length = 307
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 224 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFN 259
>pdb|1YST|M Chain M, Structure Of The Photochemical Reaction Center Of A
Spheroidene Containing Purple Bacterium, Rhodobacter
Sphaeroides Y, At 3 Angstroms Resolution
Length = 305
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 224 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFN 259
>pdb|1PST|M Chain M, Crystallographic Analyses Of Site-Directed Mutants Of The
Photosynthetic Reaction Center From Rhodobacter
Sphaeroides
Length = 296
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 219 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFN 254
>pdb|1JGZ|M Chain M, Photosynthetic Reaction Center Mutant With Tyr M 76
Replaced With Lys
Length = 307
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 224 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFN 259
>pdb|2GNU|M Chain M, The Crystallization Of Reaction Center From Rhodobacter
Sphaeroides Occurs Via A New Route
Length = 300
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 223 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFN 258
>pdb|1JGY|M Chain M, Photosynthetic Reaction Center Mutant With Tyr M 76
Replaced With Phe
Length = 307
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 224 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFN 259
>pdb|4H9L|M Chain M, Bacterial Photosynthetic Reaction Center From Rhodobacter
Sphaeroides With Ile M265 Replaced With Ser
Length = 313
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 224 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFN 259
>pdb|2RCR|M Chain M, Structure Of The Membrane-Bound Protein Photosynthetic
Reaction Center From Rhodobacter Sphaeroides
pdb|4RCR|M Chain M, Structure Of The Reaction Center From Rhodobacter
Sphaeroides R-26 And 2.4.1: Protein-Cofactor
(Bacteriochlorophyll, Bacteriopheophytin, And
Carotenoid) Interactions
pdb|1PCR|M Chain M, Structure Of The Photosynthetic Reaction Centre From
Rhodobacter Sphaeroides At 2.65 Angstroms Resolution:
Cofactors And Protein- Cofactor Interactions
pdb|1AIG|M Chain M, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The D+qb-Charge Separated State
pdb|1AIG|O Chain O, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The D+qb-Charge Separated State
pdb|1AIJ|M Chain M, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State
pdb|1F6N|M Chain M, Crystal Structure Analysis Of The Mutant Reaction Center
Pro L209-> Tyr From The Photosynthetic Purple Bacterium
Rhodobacter Sphaeroides
pdb|1FNP|M Chain M, Crystal Structure Analysis Of The Mutant Reaction Center
Pro L209-> Phe From The Photosynthetic Purple Bacterium
Rhodobacter Sphaeroides
pdb|1FNQ|M Chain M, Crystal Structure Analysis Of The Mutant Reaction Center
Pro L209-> Glu From The Photosynthetic Purple Bacterium
Rhodobacter Sphaeroides
pdb|1JH0|M Chain M, Photosynthetic Reaction Center Mutant With Glu L 205
Replaced To Leu
pdb|1L9B|M Chain M, X-ray Structure Of The Cytochrome-c(2)-photosynthetic
Reaction Center Electron Transfer Complex From
Rhodobacter Sphaeroides In Type Ii Co- Crystals
pdb|1L9J|M Chain M, X-Ray Structure Of The Cytochrome-C(2)-Photosynthetic
Reaction Center Electron Transfer Complex From
Rhodobacter Sphaeroides In Type I Co- Crystals
pdb|1L9J|S Chain S, X-Ray Structure Of The Cytochrome-C(2)-Photosynthetic
Reaction Center Electron Transfer Complex From
Rhodobacter Sphaeroides In Type I Co- Crystals
pdb|1M3X|M Chain M, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides
pdb|1OGV|M Chain M, Lipidic Cubic Phase Crystal Structure Of The
Photosynthetic Reaction Centre From Rhodobacter
Sphaeroides
pdb|1RG5|M Chain M, Structure Of The Photosynthetic Reaction Centre From
Rhodobacter Sphaeroides Carotenoidless Strain R-26.1
pdb|1RGN|M Chain M, Structure Of The Reaction Centre From Rhodobacter
Sphaeroides Carotenoidless Strain R-26.1 Reconstituted
With Spheroidene
pdb|1RQK|M Chain M, Structure Of The Reaction Centre From Rhodobacter
Sphaeroides Carotenoidless Strain R-26.1 Reconstituted
With 3,4- Dihydrospheroidene
pdb|1RY5|M Chain M, Photosynthetic Reaction Center Mutant From Rhodobacter
Sphaeroides With Asp L213 Replaced With Asn
pdb|1Z9K|B Chain B, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides
pdb|2BNP|B Chain B, Lipidic Cubic Phase Grown Reaction Centre From Rhodobacter
Sphaeroides, Ground State
pdb|2BNS|B Chain B, Lipidic Cubic Phase Grown Reaction Centre From Rhodobacter
Sphaeroides, Excited State
pdb|2GMR|M Chain M, Photosynthetic Reaction Center Mutant From Rhodobacter
Sphaeroides With Asp L210 Replaced With Asn
pdb|2HG3|M Chain M, Reaction Centre From Rhodobacter Sphaeroides Strain R-26.1
Complexed With Brominated Phosphatidylcholine
pdb|2HG9|M Chain M, Reaction Centre From Rhodobacter Sphaeroides Strain R-26.1
Complexed With Tetrabrominated Phosphatidylcholine
pdb|2HH1|M Chain M, Reaction Centre From Rhodobacter Sphaeroides Strain R-26.1
Complexed With Dibrominated Phosphatidylcholine
pdb|2HHK|M Chain M, Reaction Centre From Rhodobacter Sphaeroides Strain R-26.1
Complexed With Dibrominated Phosphatidylglycerol
pdb|2HIT|M Chain M, Reaction Centre From Rhodobacter Sphaeroides Strain R-26.1
Complexed With Dibrominated Phosphatidylethanolamine
pdb|2HJ6|M Chain M, Reaction Centre From Rhodobacter Sphaeroides Strain R-26.1
Complexed With Dibrominated Phosphatidylserine
pdb|2J8C|M Chain M, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 8 In The
Neutral State
pdb|2J8D|M Chain M, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 8 In The
Charge- Separated State
pdb|2UWS|M Chain M, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 6.5 In The
Charge-Separated State
pdb|2UWT|M Chain M, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 6.5 In The
Charge-Separated State 2nd Dataset
pdb|2UWU|M Chain M, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 6.5 In The
Neutral State, 2nd Dataset
pdb|2UWV|M Chain M, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 6.5 In The
Charge-Separated State, 3rd Dataset
pdb|2UWW|M Chain M, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 6.5 In The
Neutral State
pdb|2UX3|M Chain M, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 9 In The
Neutral State
pdb|2UX4|M Chain M, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 9 In The
Charge- Separated State, 2nd Dataset
pdb|2UX5|M Chain M, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 9 In The
Charge- Separated State
pdb|2UXJ|M Chain M, X-ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 10 In The
Neutral State
pdb|2UXK|M Chain M, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 10 In The
Charge-Separated State
pdb|2UXL|M Chain M, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 10 In The
Neutral State, 2nd Dataset
pdb|2UXM|M Chain M, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 10 In The
Charge-Separated State, 2nd Dataset
pdb|1AIJ|S Chain S, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State
pdb|2WX5|M Chain M, Hexa-Coordination Of A Bacteriochlorophyll Cofactor In The
Rhodobacter Sphaeroides Reaction Centre
pdb|3I4D|M Chain M, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides 2.4.1
pdb|3ZUM|M Chain M, Photosynthetic Reaction Centre Mutant With Phe L146
Replaced With Ala
pdb|3ZUW|M Chain M, Photosynthetic Reaction Centre Mutant With Tyr L128
Replaced With His
Length = 307
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 224 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFN 259
>pdb|3DUQ|M Chain M, E(L212)a, D(L213)a, N(M5)d Triple Mutant Structure Of
Photosynthetic Reaction Center From Rhodobacter
Sphaeroides
Length = 314
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 224 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFN 259
>pdb|3DTA|M Chain M, E(L212)q, N(M44)d Double Mutant Structure Of
Photosynthetic Reaction Center From Rhodobacter
Sphaeroides
Length = 314
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 224 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFN 259
>pdb|1K6L|M Chain M, Photosynethetic Reaction Center From Rhodobacter
Sphaeroides
pdb|1K6N|M Chain M, E(L212)a,D(L213)a Double Mutant Structure Of
Photosynthetic Reaction Center From Rhodobacter
Sphaeroides
pdb|3DSY|M Chain M, E(L212)q Mutant Structure Of Photosynthetic Reaction
Center From Rhodobacter Sphaeroides
pdb|3DTR|M Chain M, E(L212)q, L(L227)f Double Mutant Structure Of
Photosynthetic Reaction Center From Rhodobacter
Sphaeroides
pdb|3DU2|M Chain M, E(L212)a Mutant Structure Of Photosynthetic Reaction
Center From Rhodobacter Sphaeroides
Length = 314
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 224 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFN 259
>pdb|1JGX|M Chain M, Photosynthetic Reaction Center Mutant With Thr M 21
Replaced With Asp
Length = 307
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 224 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFN 259
>pdb|1YF6|M Chain M, Structure Of A Quintuple Mutant Of Photosynthetic Reaction
Center From Rhodobacter Sphaeroides
Length = 307
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 224 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFN 259
>pdb|1PSS|M Chain M, Crystallographic Analyses Of Site-Directed Mutants Of The
Photosynthetic Reaction Center From Rhodobacter
Sphaeroides
Length = 296
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 219 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFN 254
>pdb|1Z9J|B Chain B, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides
Length = 307
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGIN 522
L V F +E+ +QI RGTAA+ A F+ T+G N
Sbjct: 224 LAVSRFGGEREL--EQIADRGTAAERAALFWRWTMGFN 259
>pdb|3G7F|M Chain M, Crystal Structure Of Blastochloris Viridis Heterodimer
Mutant Reaction Center
Length = 323
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINV 523
L V F +E+ +QI RGTA + A F+ TIG N
Sbjct: 222 LAVARFGGDREI--EQITDRGTAVERAALFWRWTIGFNA 258
>pdb|2WJM|M Chain M, Lipidic Sponge Phase Crystal Structure Of The
Photosynthetic Reaction Centre From Blastochloris
Viridis (Low Dose)
pdb|2WJN|M Chain M, Lipidic Sponge Phase Crystal Structure Of Photosynthetic
Reaction Centre From Blastochloris Viridis (High Dose)
pdb|2X5U|M Chain M, 80 Microsecond Laue Diffraction Snapshot From Crystals Of
A Photosynthetic Reaction Centre Without Illumination.
pdb|2X5V|M Chain M, 80 Microsecond Laue Diffraction Snapshot From Crystals Of
A Photosynthetic Reaction Centre 3 Millisecond Following
Photoactivation
Length = 324
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINV 523
L V F +E+ +QI RGTA + A F+ TIG N
Sbjct: 223 LAVARFGGDREI--EQITDRGTAVERAALFWRWTIGFNA 259
>pdb|3T6D|M Chain M, Crystal Structure Of The Reaction Centre From
Blastochloris Viridis Strain Dsm 133 (Atcc 19567)
Substrain-08
Length = 323
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINV 523
L V F +E+ +QI RGTA + A F+ TIG N
Sbjct: 222 LAVARFGGDREI--EQITDRGTAVERAALFWRWTIGFNA 258
>pdb|4AC5|M Chain M, Lipidic Sponge Phase Crystal Structure Of The Bl. Viridis
Reaction Centre Solved Using Serial Femtosecond
Crystallography
Length = 324
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINV 523
L V F +E+ +QI RGTA + A F+ TIG N
Sbjct: 223 LAVARFGGDREI--EQITDRGTAVERAALFWRWTIGFNA 259
>pdb|1PRC|M Chain M, Crystallographic Refinement At 2.3 Angstroms Resolution
And Refined Model Of The Photosynthetic Reaction Center
From Rhodopseudomonas Viridis
pdb|2PRC|M Chain M, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Ubiquinone-2 Complex)
pdb|3PRC|M Chain M, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Qb- Depleted)
pdb|5PRC|M Chain M, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Atrazine Complex)
pdb|6PRC|M Chain M, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Dg- 420314 (Triazine) Complex)
pdb|7PRC|M Chain M, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Dg- 420315 (Triazine) Complex)
pdb|1DXR|M Chain M, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis - His L168 Phe Mutant (Terbutryn Complex)
pdb|1R2C|M Chain M, Photosynthetic Reaction Center Blastochloris Viridis
(Atcc)
pdb|1VRN|M Chain M, Photosynthetic Reaction Center Blastochloris Viridis
(Atcc)
pdb|2I5N|M Chain M, 1.96 A X-Ray Structure Of Photosynthetic Reaction Center
From Rhodopseudomonas Viridis:crystals Grown By
Microfluidic Technique
pdb|2JBL|M Chain M, Photosynthetic Reaction Center From Blastochloris Viridis
pdb|3D38|M Chain M, Crystal Structure Of New Trigonal Form Of Photosynthetic
Reaction Center From Blastochloris Viridis. Crystals
Grown In Microfluidics By Detergent Capture
Length = 323
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINV 523
L V F +E+ +QI RGTA + A F+ TIG N
Sbjct: 222 LAVARFGGDREI--EQITDRGTAVERAALFWRWTIGFNA 258
>pdb|3T6E|M Chain M, Crystal Structure Of The Reaction Centre From
Blastochloris Viridis Strain Dsm 133 (Atcc 19567)
Substrain-94
Length = 323
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 485 LKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINV 523
L V F +E+ +QI RGTA + A F+ TIG N
Sbjct: 222 LAVARFGGDREI--EQITDRGTAVERAALFWRWTIGFNA 258
>pdb|3CF4|A Chain A, Structure Of The Codh Component Of The M. Barkeri Acds
Complex
Length = 807
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%)
Query: 111 KKFRSRNKKIRFGPTKLPDCVVVLDTERKSSVIMEAAKLQVPIVA 155
K S +K+++ + +PD +VV + + ++ EA KL++P++A
Sbjct: 297 KVIGSMSKELKVIRSGMPDVIVVDEQCVRGDIVPEAQKLKIPVIA 341
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,311,922
Number of Sequences: 62578
Number of extensions: 679242
Number of successful extensions: 1642
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1581
Number of HSP's gapped (non-prelim): 87
length of query: 641
length of database: 14,973,337
effective HSP length: 105
effective length of query: 536
effective length of database: 8,402,647
effective search space: 4503818792
effective search space used: 4503818792
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)