Query 006541
Match_columns 641
No_of_seqs 297 out of 1644
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 00:47:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006541.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006541hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2638 UDP-glucose pyrophosph 100.0 2E-122 3E-127 964.2 34.7 405 232-641 77-495 (498)
2 PLN02474 UTP--glucose-1-phosph 100.0 1E-118 3E-123 976.5 40.5 410 231-641 48-469 (469)
3 PF01704 UDPGP: UTP--glucose-1 100.0 3E-105 7E-110 868.9 25.6 374 235-609 29-420 (420)
4 PLN02830 UDP-sugar pyrophospho 100.0 6E-92 1.3E-96 790.4 36.8 397 236-636 103-575 (615)
5 cd00897 UGPase_euk Eukaryotic 100.0 1.2E-90 2.5E-95 724.4 28.9 287 260-547 1-300 (300)
6 COG4284 UDP-glucose pyrophosph 100.0 1.5E-78 3.1E-83 651.6 29.6 380 232-638 77-472 (472)
7 PLN02435 probable UDP-N-acetyl 100.0 2.1E-76 4.6E-81 648.7 25.3 322 232-554 82-447 (493)
8 cd04193 UDPGlcNAc_PPase UDPGlc 100.0 6.4E-74 1.4E-78 606.9 27.0 280 254-535 5-323 (323)
9 cd06424 UGGPase UGGPase cataly 100.0 2.1E-70 4.5E-75 574.0 25.1 269 263-534 1-314 (315)
10 PTZ00339 UDP-N-acetylglucosami 100.0 2.3E-69 4.9E-74 594.7 27.0 299 254-554 96-438 (482)
11 cd04180 UGPase_euk_like Eukary 100.0 1.5E-63 3.3E-68 515.6 26.5 242 263-533 1-266 (266)
12 KOG2388 UDP-N-acetylglucosamin 100.0 3.2E-59 6.9E-64 501.0 15.3 294 255-551 88-426 (477)
13 COG0052 RpsB Ribosomal protein 100.0 1.2E-55 2.6E-60 440.7 19.5 192 4-201 2-228 (252)
14 PRK05299 rpsB 30S ribosomal pr 100.0 5.7E-53 1.2E-57 433.2 19.3 201 5-211 3-239 (258)
15 TIGR01012 Sa_S2_E_A ribosomal 100.0 1.1E-52 2.4E-57 412.9 20.2 180 4-204 2-183 (196)
16 PRK04020 rps2P 30S ribosomal p 100.0 4.3E-52 9.4E-57 411.0 20.3 178 5-203 9-188 (204)
17 PRK12311 rpsB 30S ribosomal pr 100.0 2.1E-52 4.5E-57 439.2 18.9 187 8-200 1-223 (326)
18 TIGR01011 rpsB_bact ribosomal 100.0 4.4E-52 9.5E-57 419.6 19.4 187 6-198 2-224 (225)
19 PTZ00254 40S ribosomal protein 100.0 6.8E-51 1.5E-55 411.2 21.0 183 2-204 9-193 (249)
20 CHL00067 rps2 ribosomal protei 100.0 4.6E-51 1E-55 413.4 18.6 189 3-197 5-229 (230)
21 KOG0832 Mitochondrial/chloropl 100.0 3.3E-49 7.1E-54 387.1 18.1 193 2-200 44-244 (251)
22 cd01425 RPS2 Ribosomal protein 100.0 1.6E-48 3.5E-53 385.9 17.4 179 11-195 1-193 (193)
23 PF00318 Ribosomal_S2: Ribosom 100.0 1.2E-47 2.7E-52 384.5 17.6 181 11-197 1-211 (211)
24 KOG0830 40S ribosomal protein 99.9 2.3E-27 4.9E-32 234.3 12.0 159 24-202 2-162 (254)
25 COG1207 GlmU N-acetylglucosami 98.7 1.4E-06 3.1E-11 94.5 20.7 294 262-639 2-310 (460)
26 PRK14359 glmU bifunctional N-a 98.7 6.8E-06 1.5E-10 90.6 25.3 224 263-543 3-232 (430)
27 PRK05293 glgC glucose-1-phosph 98.6 6.2E-06 1.3E-10 89.7 23.5 251 261-549 2-262 (380)
28 PRK14356 glmU bifunctional N-a 98.5 2.5E-05 5.4E-10 86.9 25.3 227 262-541 5-240 (456)
29 PRK00844 glgC glucose-1-phosph 98.4 7.1E-05 1.5E-09 82.6 25.5 199 259-481 2-212 (407)
30 TIGR01208 rmlA_long glucose-1- 98.4 0.00011 2.4E-09 79.1 25.2 227 265-546 2-236 (353)
31 COG1208 GCD1 Nucleoside-diphos 98.4 8.8E-05 1.9E-09 80.7 23.9 228 264-546 3-236 (358)
32 PRK14352 glmU bifunctional N-a 98.4 0.00013 2.9E-09 82.1 26.1 185 261-481 3-191 (482)
33 cd04189 G1P_TT_long G1P_TT_lon 98.4 0.00011 2.3E-09 74.3 22.7 229 264-544 2-233 (236)
34 PRK14360 glmU bifunctional N-a 98.3 3.8E-05 8.2E-10 85.3 20.7 226 263-540 2-232 (450)
35 PRK14353 glmU bifunctional N-a 98.3 0.00013 2.9E-09 81.0 24.1 231 261-541 4-239 (446)
36 PRK00725 glgC glucose-1-phosph 98.3 0.00025 5.4E-09 78.9 26.1 203 255-481 8-224 (425)
37 cd06426 NTP_transferase_like_2 98.3 0.00011 2.4E-09 73.2 20.9 216 265-540 1-219 (220)
38 cd06915 NTP_transferase_WcbM_l 98.3 8.3E-05 1.8E-09 73.7 19.8 216 265-540 1-222 (223)
39 TIGR02092 glgD glucose-1-phosp 98.3 0.00018 3.9E-09 78.0 23.3 243 262-547 2-255 (369)
40 PRK14358 glmU bifunctional N-a 98.2 0.00024 5.2E-09 80.2 24.2 174 261-473 6-183 (481)
41 PRK02862 glgC glucose-1-phosph 98.2 0.00044 9.6E-09 76.9 25.7 202 261-481 2-225 (429)
42 PRK14355 glmU bifunctional N-a 98.2 0.00067 1.4E-08 75.9 25.7 230 261-542 2-240 (459)
43 PLN02241 glucose-1-phosphate a 98.2 0.00065 1.4E-08 75.8 25.3 252 261-546 2-282 (436)
44 cd02540 GT2_GlmU_N_bac N-termi 98.1 0.00026 5.7E-09 70.9 19.6 224 265-537 1-229 (229)
45 PF00483 NTP_transferase: Nucl 98.1 3.8E-05 8.2E-10 77.9 13.4 231 266-544 3-245 (248)
46 cd04181 NTP_transferase NTP_tr 98.0 0.00029 6.3E-09 69.7 17.8 173 265-476 1-177 (217)
47 PRK14357 glmU bifunctional N-a 98.0 0.00054 1.2E-08 76.1 21.7 176 264-481 2-179 (448)
48 TIGR01173 glmU UDP-N-acetylglu 97.9 0.0022 4.7E-08 71.1 24.5 174 265-481 3-181 (451)
49 cd06425 M1P_guanylylT_B_like_N 97.9 0.00073 1.6E-08 68.4 18.0 180 265-479 3-186 (233)
50 cd02538 G1P_TT_short G1P_TT_sh 97.9 0.00058 1.3E-08 69.4 17.2 226 264-543 2-236 (240)
51 cd06422 NTP_transferase_like_1 97.9 0.00069 1.5E-08 67.8 17.1 173 265-479 2-180 (221)
52 cd02509 GDP-M1P_Guanylyltransf 97.9 0.00044 9.6E-09 72.4 16.2 186 264-482 2-208 (274)
53 cd04197 eIF-2B_epsilon_N The N 97.8 0.00063 1.4E-08 68.3 16.0 158 265-455 3-179 (217)
54 TIGR02623 G1P_cyt_trans glucos 97.8 0.002 4.4E-08 66.6 19.2 229 265-543 2-243 (254)
55 TIGR02091 glgC glucose-1-phosp 97.8 0.003 6.5E-08 68.2 21.2 241 266-546 2-259 (361)
56 cd06428 M1P_guanylylT_A_like_N 97.7 0.0029 6.4E-08 65.1 18.6 179 266-479 2-190 (257)
57 PRK05450 3-deoxy-manno-octulos 97.7 0.01 2.2E-07 60.4 22.1 228 262-543 2-243 (245)
58 TIGR01105 galF UTP-glucose-1-p 97.6 0.0028 6.1E-08 67.4 18.3 231 262-540 3-272 (297)
59 TIGR01207 rmlA glucose-1-phosp 97.6 0.003 6.6E-08 66.7 17.8 231 265-549 2-241 (286)
60 PRK15480 glucose-1-phosphate t 97.6 0.0036 7.8E-08 66.4 18.2 229 262-545 3-241 (292)
61 PRK14354 glmU bifunctional N-a 97.6 0.016 3.5E-07 64.6 24.0 179 263-481 3-185 (458)
62 cd02524 G1P_cytidylyltransfera 97.6 0.0046 1E-07 63.5 18.2 188 265-477 1-197 (253)
63 PRK10122 GalU regulator GalF; 97.5 0.0064 1.4E-07 64.6 19.1 235 261-543 2-275 (297)
64 PRK09451 glmU bifunctional N-a 97.5 0.02 4.4E-07 64.0 24.1 178 262-481 5-185 (456)
65 cd02508 ADP_Glucose_PP ADP-glu 97.4 0.0034 7.4E-08 62.1 14.0 139 266-422 2-143 (200)
66 cd02523 PC_cytidylyltransferas 97.4 0.0079 1.7E-07 60.5 16.6 170 265-479 1-176 (229)
67 cd04198 eIF-2B_gamma_N The N-t 97.3 0.0082 1.8E-07 60.3 15.7 133 265-430 3-141 (214)
68 cd02541 UGPase_prokaryotic Pro 97.2 0.043 9.4E-07 56.6 20.6 245 265-544 3-264 (267)
69 COG0448 GlgC ADP-glucose pyrop 97.2 0.018 3.9E-07 63.0 17.4 198 260-483 3-211 (393)
70 PF12804 NTP_transf_3: MobA-li 97.0 0.0025 5.3E-08 60.4 8.4 48 265-320 1-48 (160)
71 cd02517 CMP-KDO-Synthetase CMP 96.9 0.06 1.3E-06 54.5 18.0 179 262-481 1-191 (239)
72 PLN02728 2-C-methyl-D-erythrit 96.9 0.0012 2.5E-08 68.7 5.5 70 258-332 20-89 (252)
73 cd04183 GT2_BcE_like GT2_BcbE_ 96.9 0.064 1.4E-06 53.9 18.0 173 265-480 1-181 (231)
74 KOG1322 GDP-mannose pyrophosph 96.9 0.037 8E-07 59.1 16.5 187 261-481 8-199 (371)
75 PF14134 DUF4301: Domain of un 96.9 0.013 2.9E-07 65.4 13.8 242 280-539 166-509 (513)
76 TIGR01479 GMP_PMI mannose-1-ph 96.9 0.028 6.1E-07 63.5 16.7 184 265-482 3-210 (468)
77 TIGR01099 galU UTP-glucose-1-p 96.8 0.055 1.2E-06 55.6 16.4 196 265-479 3-213 (260)
78 PLN02917 CMP-KDO synthetase 96.8 0.14 3E-06 54.4 19.7 227 261-542 46-285 (293)
79 COG1213 Predicted sugar nucleo 96.7 0.0042 9.1E-08 63.5 7.6 65 264-335 5-70 (239)
80 TIGR00454 conserved hypothetic 96.6 0.0041 8.9E-08 61.4 6.7 125 264-429 2-130 (183)
81 PRK13385 2-C-methyl-D-erythrit 96.6 0.0039 8.5E-08 63.2 6.7 67 262-333 2-68 (230)
82 PRK00560 molybdopterin-guanine 96.6 0.0026 5.7E-08 63.2 5.1 41 261-303 7-47 (196)
83 PF01128 IspD: 2-C-methyl-D-er 96.6 0.0029 6.4E-08 64.5 5.2 65 263-332 1-65 (221)
84 PRK13389 UTP--glucose-1-phosph 96.5 0.41 8.9E-06 51.1 20.9 246 264-543 10-278 (302)
85 PRK14489 putative bifunctional 96.4 0.012 2.6E-07 64.3 9.2 41 260-302 3-43 (366)
86 PRK13368 3-deoxy-manno-octulos 96.3 0.33 7.1E-06 49.1 18.3 218 262-541 2-235 (238)
87 cd02507 eIF-2B_gamma_N_like Th 96.1 0.11 2.4E-06 52.3 13.7 160 265-456 3-181 (216)
88 COG2266 GTP:adenosylcobinamide 96.1 0.012 2.6E-07 57.7 6.0 61 264-333 2-62 (177)
89 COG1209 RfbA dTDP-glucose pyro 96.0 0.2 4.3E-06 52.5 14.7 155 266-456 4-166 (286)
90 cd04182 GT_2_like_f GT_2_like_ 95.9 0.015 3.2E-07 55.9 6.1 113 263-415 1-114 (186)
91 PRK09382 ispDF bifunctional 2- 95.9 0.09 2E-06 57.9 12.7 150 261-453 4-158 (378)
92 cd02513 CMP-NeuAc_Synthase CMP 95.9 0.2 4.4E-06 49.8 14.3 180 262-479 1-189 (223)
93 PRK02726 molybdopterin-guanine 95.8 0.011 2.3E-07 59.0 4.5 40 261-303 6-45 (200)
94 cd02503 MobA MobA catalyzes th 95.7 0.011 2.3E-07 57.3 3.9 105 264-415 2-107 (181)
95 TIGR03202 pucB xanthine dehydr 95.5 0.014 3E-07 57.2 4.2 115 264-415 2-119 (190)
96 TIGR02665 molyb_mobA molybdopt 95.5 0.012 2.7E-07 57.1 3.7 38 263-302 1-38 (186)
97 PRK00317 mobA molybdopterin-gu 95.4 0.016 3.4E-07 57.0 4.2 40 261-302 2-41 (193)
98 PRK00155 ispD 2-C-methyl-D-ery 95.4 0.016 3.5E-07 58.4 4.3 41 262-303 3-43 (227)
99 cd02516 CDP-ME_synthetase CDP- 95.4 0.014 3E-07 58.1 3.7 55 263-322 1-55 (218)
100 COG0746 MobA Molybdopterin-gua 95.4 0.039 8.6E-07 55.1 6.8 107 261-416 3-111 (192)
101 TIGR00453 ispD 2-C-methyl-D-er 95.3 0.015 3.2E-07 58.1 3.8 38 265-303 2-39 (217)
102 PRK14490 putative bifunctional 95.3 0.02 4.3E-07 62.6 4.9 39 262-303 174-212 (369)
103 TIGR03310 matur_ygfJ molybdenu 95.3 0.017 3.8E-07 55.9 4.0 51 265-323 2-52 (188)
104 KOG1460 GDP-mannose pyrophosph 95.2 1.3 2.8E-05 47.1 17.3 237 264-536 4-255 (407)
105 PRK14500 putative bifunctional 95.0 0.024 5.3E-07 61.6 4.3 39 262-303 160-198 (346)
106 COG4284 UDP-glucose pyrophosph 94.5 0.016 3.5E-07 64.6 1.4 40 498-537 365-409 (472)
107 COG0836 {ManC} Mannose-1-phosp 94.2 0.36 7.7E-06 51.7 10.7 66 263-332 2-71 (333)
108 PRK15460 cpsB mannose-1-phosph 94.2 0.15 3.3E-06 57.9 8.4 185 263-482 6-219 (478)
109 COG1211 IspD 4-diphosphocytidy 94.2 0.077 1.7E-06 54.5 5.5 66 261-331 3-68 (230)
110 cd05006 SIS_GmhA Phosphoheptos 92.9 2.1 4.5E-05 41.7 13.0 140 47-192 16-174 (177)
111 PRK05441 murQ N-acetylmuramic 92.1 3.7 8E-05 43.9 14.6 153 43-199 41-218 (299)
112 PRK10886 DnaA initiator-associ 91.4 4.6 9.9E-05 40.6 13.6 140 47-193 24-186 (196)
113 TIGR00466 kdsB 3-deoxy-D-manno 91.2 0.49 1.1E-05 48.5 6.7 35 265-303 2-36 (238)
114 PRK13938 phosphoheptose isomer 90.8 7.4 0.00016 39.1 14.5 146 44-193 25-187 (196)
115 PRK12570 N-acetylmuramic acid- 90.4 5 0.00011 42.8 13.5 154 44-201 38-216 (296)
116 cd05007 SIS_Etherase N-acetylm 90.3 7.2 0.00016 40.7 14.4 152 44-199 29-205 (257)
117 PRK10892 D-arabinose 5-phospha 88.7 13 0.00028 39.7 15.3 47 126-173 93-143 (326)
118 PRK11557 putative DNA-binding 88.5 5.9 0.00013 41.2 12.3 48 126-174 174-225 (278)
119 TIGR03127 RuMP_HxlB 6-phospho 88.2 5 0.00011 39.0 10.8 47 126-173 71-121 (179)
120 PRK00414 gmhA phosphoheptose i 88.0 15 0.00032 36.6 14.1 124 46-176 26-163 (192)
121 cd05005 SIS_PHI Hexulose-6-pho 87.9 5.7 0.00012 38.7 11.0 51 126-177 74-130 (179)
122 PF13580 SIS_2: SIS domain; PD 87.5 5.4 0.00012 37.4 10.2 108 47-157 18-137 (138)
123 PRK13936 phosphoheptose isomer 87.1 8.7 0.00019 38.4 12.0 127 47-185 26-179 (197)
124 TIGR00441 gmhA phosphoheptose 86.7 19 0.0004 34.4 13.5 51 126-177 78-134 (154)
125 cd02518 GT2_SpsF SpsF is a gly 86.7 1.8 3.9E-05 43.7 6.9 60 265-332 2-62 (233)
126 PRK15482 transcriptional regul 86.2 9.7 0.00021 39.9 12.3 49 126-175 181-233 (285)
127 TIGR00274 N-acetylmuramic acid 85.3 17 0.00037 38.8 13.6 155 43-199 36-213 (291)
128 PRK11302 DNA-binding transcrip 84.9 12 0.00026 39.0 12.2 71 126-198 174-259 (284)
129 PRK13937 phosphoheptose isomer 84.8 43 0.00093 33.1 15.9 125 47-177 21-161 (188)
130 COG4750 LicC CTP:phosphocholin 84.1 0.78 1.7E-05 45.9 2.7 37 265-302 3-42 (231)
131 COG2068 Uncharacterized MobA-r 82.4 1.9 4.1E-05 43.4 4.7 117 261-413 4-121 (199)
132 PRK02947 hypothetical protein; 82.4 33 0.00072 35.5 14.1 110 48-160 24-143 (246)
133 cd05014 SIS_Kpsf KpsF-like pro 79.0 16 0.00035 33.0 9.4 49 126-175 46-98 (128)
134 cd05013 SIS_RpiR RpiR-like pro 78.4 20 0.00044 32.1 9.9 50 126-176 59-112 (139)
135 PRK11337 DNA-binding transcrip 77.7 17 0.00038 38.1 10.4 47 126-173 186-236 (292)
136 TIGR00393 kpsF KpsF/GutQ famil 76.1 35 0.00076 35.1 12.0 48 126-174 46-97 (268)
137 PF10087 DUF2325: Uncharacteri 75.6 10 0.00022 33.4 6.7 74 66-156 1-81 (97)
138 TIGR03584 PseF pseudaminic aci 74.9 9.4 0.0002 38.8 7.2 35 265-303 2-36 (222)
139 PRK14101 bifunctional glucokin 74.8 20 0.00043 42.3 10.9 49 126-176 514-566 (638)
140 PRK08674 bifunctional phosphog 69.3 76 0.0017 34.2 13.1 75 126-202 77-160 (337)
141 PRK11543 gutQ D-arabinose 5-ph 68.2 41 0.00089 35.7 10.6 47 126-173 88-138 (321)
142 PF01380 SIS: SIS domain SIS d 62.2 25 0.00054 31.5 6.6 50 127-177 53-108 (131)
143 cd05009 SIS_GlmS_GlmD_2 SIS (S 62.2 1.3E+02 0.0028 27.7 11.6 114 63-198 12-139 (153)
144 PRK11382 frlB fructoselysine-6 61.6 1.3E+02 0.0028 32.5 13.1 50 127-177 92-145 (340)
145 cd06295 PBP1_CelR Ligand bindi 59.3 26 0.00057 35.4 6.9 47 126-176 63-109 (275)
146 cd05710 SIS_1 A subgroup of th 57.1 32 0.00069 31.3 6.3 51 126-177 46-100 (120)
147 COG1737 RpiR Transcriptional r 56.9 42 0.00092 35.4 8.1 71 126-198 176-262 (281)
148 COG0560 SerB Phosphoserine pho 56.5 19 0.00041 36.5 5.2 103 52-177 81-187 (212)
149 cd05008 SIS_GlmS_GlmD_1 SIS (S 55.1 21 0.00045 32.2 4.7 38 126-163 45-86 (126)
150 COG0449 GlmS Glucosamine 6-pho 52.9 48 0.0011 38.9 8.2 48 129-177 332-383 (597)
151 COG0279 GmhA Phosphoheptose is 51.2 2E+02 0.0044 28.5 10.9 131 44-177 21-164 (176)
152 PRK00331 glucosamine--fructose 50.9 1.9E+02 0.0041 33.8 12.9 96 62-176 287-388 (604)
153 cd05017 SIS_PGI_PMI_1 The memb 49.5 29 0.00062 31.4 4.7 49 126-177 42-100 (119)
154 TIGR03088 stp2 sugar transfera 46.4 1.3E+02 0.0027 32.1 9.9 63 126-189 271-336 (374)
155 COG1519 KdtA 3-deoxy-D-manno-o 45.6 32 0.00069 38.5 5.1 34 126-160 122-155 (419)
156 KOG4042 Dynactin subunit p27/W 44.4 18 0.00038 35.1 2.5 47 585-632 12-58 (190)
157 PF04413 Glycos_transf_N: 3-De 43.4 20 0.00044 35.5 3.0 98 47-164 31-131 (186)
158 cd06278 PBP1_LacI_like_2 Ligan 42.3 67 0.0015 31.9 6.6 45 126-174 53-97 (266)
159 cd06294 PBP1_ycjW_transcriptio 40.8 61 0.0013 32.4 6.1 35 126-161 59-93 (270)
160 TIGR02180 GRX_euk Glutaredoxin 39.8 91 0.002 25.5 6.0 72 297-386 11-84 (84)
161 cd06302 PBP1_LsrB_Quorum_Sensi 39.6 99 0.0021 32.0 7.6 35 126-161 55-91 (298)
162 PF04007 DUF354: Protein of un 39.2 91 0.002 34.0 7.3 109 41-161 5-114 (335)
163 cd06311 PBP1_ABC_sugar_binding 38.8 1.2E+02 0.0027 30.5 8.0 35 126-161 59-95 (274)
164 PTZ00295 glucosamine-fructose- 38.0 4.6E+02 0.01 31.0 13.5 71 129-199 548-625 (640)
165 cd06271 PBP1_AglR_RafR_like Li 37.6 90 0.002 31.1 6.7 36 126-162 58-93 (268)
166 PLN02335 anthranilate synthase 37.5 77 0.0017 32.3 6.1 32 61-92 15-46 (222)
167 PRK15408 autoinducer 2-binding 35.6 1.2E+02 0.0025 32.8 7.5 95 56-163 15-117 (336)
168 cd06273 PBP1_GntR_like_1 This 34.4 1.1E+02 0.0024 30.5 6.8 35 126-161 54-88 (268)
169 COG1954 GlpP Glycerol-3-phosph 34.0 1.8E+02 0.004 28.9 7.7 86 50-155 64-149 (181)
170 PRK07765 para-aminobenzoate sy 33.8 1.2E+02 0.0025 30.8 6.8 77 66-159 2-85 (214)
171 PRK06774 para-aminobenzoate sy 33.7 99 0.0021 30.4 6.1 71 67-158 2-80 (191)
172 TIGR01135 glmS glucosamine--fr 33.7 3.4E+02 0.0074 31.8 11.5 50 126-176 337-390 (607)
173 COG1664 CcmA Integral membrane 33.4 61 0.0013 31.2 4.4 40 594-635 30-71 (146)
174 COG4069 Uncharacterized protei 32.8 41 0.00088 36.0 3.2 39 125-163 264-302 (367)
175 cd06296 PBP1_CatR_like Ligand- 32.4 1E+02 0.0022 30.8 6.2 35 126-161 54-88 (270)
176 cd06274 PBP1_FruR Ligand bindi 31.3 1.6E+02 0.0036 29.3 7.4 58 126-189 54-111 (264)
177 COG2222 AgaS Predicted phospho 30.9 4.4E+02 0.0094 28.9 10.9 109 46-176 19-139 (340)
178 cd06279 PBP1_LacI_like_3 Ligan 30.7 1.3E+02 0.0028 30.7 6.6 36 126-162 55-90 (283)
179 TIGR00566 trpG_papA glutamine 30.6 1.3E+02 0.0028 29.7 6.3 72 67-159 2-81 (188)
180 cd06292 PBP1_LacI_like_10 Liga 30.2 1.1E+02 0.0024 30.7 6.0 36 126-162 54-94 (273)
181 cd06318 PBP1_ABC_sugar_binding 30.2 1.5E+02 0.0033 29.8 7.0 35 126-161 54-90 (282)
182 PF10740 DUF2529: Protein of u 29.9 1.7E+02 0.0037 29.0 6.8 89 49-157 23-115 (172)
183 cd06283 PBP1_RegR_EndR_KdgR_li 29.5 1.2E+02 0.0026 30.1 6.0 36 126-162 54-89 (267)
184 CHL00101 trpG anthranilate syn 29.5 1.6E+02 0.0034 29.1 6.7 74 67-159 2-81 (190)
185 cd06300 PBP1_ABC_sugar_binding 29.4 1.3E+02 0.0029 30.2 6.4 34 126-160 59-94 (272)
186 COG0641 AslB Arylsulfatase reg 29.3 88 0.0019 34.7 5.3 112 278-400 121-238 (378)
187 cd06270 PBP1_GalS_like Ligand 28.9 1.3E+02 0.0027 30.2 6.1 36 126-162 54-89 (268)
188 cd06306 PBP1_TorT-like TorT-li 28.5 2E+02 0.0044 29.0 7.6 32 126-157 56-88 (268)
189 PTZ00295 glucosamine-fructose- 27.9 3.6E+02 0.0079 31.9 10.5 49 127-176 369-421 (640)
190 KOG2963 RNA-binding protein re 27.1 40 0.00088 36.7 2.1 45 298-352 115-166 (405)
191 TIGR02634 xylF D-xylose ABC tr 26.5 1.7E+02 0.0036 30.5 6.7 36 126-162 53-90 (302)
192 PRK05670 anthranilate synthase 26.2 1.2E+02 0.0025 29.8 5.1 74 66-159 1-81 (189)
193 cd01575 PBP1_GntR Ligand-bindi 26.0 1.9E+02 0.004 28.7 6.7 35 126-160 54-88 (268)
194 COG1210 GalU UDP-glucose pyrop 25.7 1.1E+02 0.0023 32.8 4.8 37 266-303 8-47 (291)
195 COG1879 RbsB ABC-type sugar tr 25.7 2.2E+02 0.0048 29.9 7.5 67 125-195 89-157 (322)
196 PRK07649 para-aminobenzoate/an 25.2 2E+02 0.0044 28.6 6.7 73 67-158 2-80 (195)
197 PRK05718 keto-hydroxyglutarate 25.1 2.1E+02 0.0046 29.1 6.8 84 52-154 28-112 (212)
198 PRK15427 colanic acid biosynth 24.9 8.4E+02 0.018 26.8 12.2 123 47-189 237-368 (406)
199 PF01973 MAF_flag10: Protein o 24.9 1.5E+02 0.0032 28.5 5.5 73 64-155 24-98 (170)
200 cd04795 SIS SIS domain. SIS (S 24.6 1.1E+02 0.0023 25.3 3.9 32 126-157 46-81 (87)
201 TIGR01815 TrpE-clade3 anthrani 24.4 3.4E+02 0.0074 32.8 9.4 77 63-159 515-597 (717)
202 cd04951 GT1_WbdM_like This fam 23.8 5.6E+02 0.012 26.3 10.0 50 127-177 262-312 (360)
203 cd06317 PBP1_ABC_sugar_binding 23.1 2.4E+02 0.0052 28.2 6.9 35 126-161 55-91 (275)
204 PRK11070 ssDNA exonuclease Rec 22.9 4.2E+02 0.009 31.2 9.5 105 42-162 48-162 (575)
205 cd01574 PBP1_LacI Ligand-bindi 22.7 2.1E+02 0.0045 28.5 6.3 35 126-161 55-89 (264)
206 TIGR02128 G6PI_arch bifunction 22.7 9.7E+02 0.021 25.7 12.6 51 126-177 65-123 (308)
207 cd06314 PBP1_tmGBP Periplasmic 22.7 2.9E+02 0.0063 27.7 7.5 34 126-161 54-89 (271)
208 cd01141 TroA_d Periplasmic bin 22.3 1.1E+02 0.0023 29.5 3.9 32 125-156 67-98 (186)
209 cd06297 PBP1_LacI_like_12 Liga 22.2 2.1E+02 0.0047 28.8 6.4 34 126-160 54-87 (269)
210 cd01540 PBP1_arabinose_binding 22.0 2.8E+02 0.006 28.1 7.2 32 126-157 53-86 (289)
211 PRK13566 anthranilate synthase 21.5 2.4E+02 0.0052 34.1 7.3 77 63-159 525-607 (720)
212 PF04227 Indigoidine_A: Indigo 21.5 78 0.0017 34.0 2.9 30 320-352 154-183 (293)
213 COG0378 HypB Ni2+-binding GTPa 21.3 4.8E+02 0.01 26.6 8.3 95 287-411 22-118 (202)
214 cd06299 PBP1_LacI_like_13 Liga 21.2 3.2E+02 0.0069 27.1 7.3 35 126-161 54-88 (265)
215 TIGR02815 agaS_fam putative su 21.0 1.1E+03 0.024 25.8 12.3 35 128-162 93-133 (372)
216 cd06289 PBP1_MalI_like Ligand- 21.0 2.6E+02 0.0057 27.6 6.7 47 126-176 54-101 (268)
217 cd06285 PBP1_LacI_like_7 Ligan 20.9 1.2E+02 0.0026 30.4 4.1 34 126-160 54-87 (265)
218 cd06267 PBP1_LacI_sugar_bindin 20.8 2.5E+02 0.0054 27.4 6.4 35 126-161 54-88 (264)
219 cd06305 PBP1_methylthioribose_ 20.7 2.3E+02 0.0049 28.3 6.2 35 126-161 54-90 (273)
220 PLN02981 glucosamine:fructose- 20.2 7.4E+02 0.016 29.7 11.1 48 127-175 410-461 (680)
221 COG0800 Eda 2-keto-3-deoxy-6-p 20.1 3E+02 0.0066 28.2 6.7 83 52-154 26-110 (211)
No 1
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-122 Score=964.24 Aligned_cols=405 Identities=45% Similarity=0.759 Sum_probs=393.2
Q ss_pred ccCCCCCccccCCCcCCCcccHHHHHhhcCcEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCC
Q 006541 232 IDSKDEILVVPYESLASISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCN 311 (641)
Q Consensus 232 l~~~~~~~~~~y~~l~~~~~~~~~~~~~l~k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~ 311 (641)
|++++++.++||++++.. +..+.+|+|+||+|||||+||+|||.||||+++|++|.|||||.++||++||++|+++
T Consensus 77 I~~p~~d~vv~y~~i~~~----~~~~~~L~KLavlKLNGGlGttmGc~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~d 152 (498)
T KOG2638|consen 77 IRPPPEDAVVPYDDIKNV----ELSKSLLNKLAVLKLNGGLGTTMGCKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVD 152 (498)
T ss_pred ccCCChhhccccccccch----hhHHHhhhheEEEEecCCcCCccccCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCC
Confidence 455679999999999865 4678999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCccchHHHHHHHHHcCCCCceEEEEecCCccccc-----cCC---CCCCCccccCCCChhhHHHHHHhcChhH
Q 006541 312 VPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQQPHEK-----SFE---GHSRKDKLYPSSDHSVVFLSLMKSGTLD 383 (641)
Q Consensus 312 iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~~f~Q~~~P~~~-----~~~---~~~~~~~~~P~GhG~di~~aL~~sG~Ld 383 (641)
+||++||||+|+++|.++++||.++.++|++|.|+++|+++ |.. ++.+..+||||||| |+|.+|+.||+||
T Consensus 153 VPlvLMNSfnTdedT~kil~ky~~~kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHG-d~f~sl~nSG~Ld 231 (498)
T KOG2638|consen 153 VPLVLMNSFNTDEDTQKILKKYAGSKVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHG-DLFDSLHNSGLLD 231 (498)
T ss_pred CCEEEecccccchHHHHHHHHhcCCceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCc-cHHHHHhccchHH
Confidence 99999999999999999999999999999999999999998 333 34567999999999 9999999999999
Q ss_pred HHHHcCceEEEEEcCcccccccCHHHHHHHhhcCCceEEEEeccCCCCCcceEEEeeCCeEEEEEecCCCccccCC----
Q 006541 384 LLLVQGKEYALVVDSDNVAAVADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGG---- 459 (641)
Q Consensus 384 ~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~~~~~~~evv~k~~~d~kgG~l~~~~g~~~lvEysq~~~~~~~~---- 459 (641)
+|+++|+||+||+|+|||||++|..||.|++.++++|+|||++||.+|.|||+++.++|+++++||+|+|++++++
T Consensus 232 ~llaqGkEylFVSNiDNLGAtvDL~ILn~~i~~~~ey~MEvTdKT~aDvKgGtLi~y~G~lrlLEiaQVP~ehv~eFkS~ 311 (498)
T KOG2638|consen 232 KLLAQGKEYLFVSNIDNLGATVDLNILNHVINNNIEYLMEVTDKTRADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFKSI 311 (498)
T ss_pred HHHhCCceEEEEeccccccceeeHHHHHHHhcCCCceEEEecccchhhcccceEEeecCEEEEEEeccCChhHhhhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred -CCceeeeeceeeeHHHHHHHhhcCCCccceeecccccC-CCCchhhhHhhhhHhhcCCCceEEEEeccccccccCCchh
Q 006541 460 -KFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVN-DDQIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTSDL 537 (641)
Q Consensus 460 -~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~-~~~~~qlE~~i~d~i~~f~~~~~i~V~R~rF~PvKn~~dl 537 (641)
+|++|||||+|++|.++++++++..+.|++|+|+|+++ +.+++||||++|+||++|+++.|+.|||+||+|||+|+||
T Consensus 312 kkFkifNTNNlWinLkavKrlve~~~l~meIi~N~kti~~~~~viQleTa~GaaIk~F~na~gv~VpRsRFlPVKt~sDL 391 (498)
T KOG2638|consen 312 KKFKIFNTNNLWINLKAVKKLVEENALNMEIIVNPKTIDRGIEVIQLETAAGAAIKFFDNAIGVNVPRSRFLPVKTCSDL 391 (498)
T ss_pred eeEEEeccCCeEEehHHHHHHhhcCcccceeecChhhccCCceEEEEhhhhhHHHHhCCCceeeeccccccccccccccc
Confidence 99999999999999999999999999999999999999 8899999999999999999999999999999999999999
Q ss_pred hhhhhhhcccccCceeeCCCCCCCCCCeEEeCCCcccHHhHhhhcCCCCCCCCcceEEEecceEEccCcEEEEEEEEEcC
Q 006541 538 LLLQSDLYTADEGILVQNPARDNPANPSIELGPEFEKVNNFQSRFKSIPSIINLDSLKVEGDVWFGAGITLKGKVSIVAK 617 (641)
Q Consensus 538 l~~~sd~y~~~~g~l~~~~~r~~~~~P~i~L~~~f~~~~~~~~rf~~~p~i~~~~~L~V~Gdv~fg~~v~l~G~v~i~a~ 617 (641)
|+++||+|.+++|.+.++|.|.++..|+|+||++|+++++|..|||+||+|++|+||||+||||||+||+|+|+|+|+|+
T Consensus 392 lLv~S~Ly~ld~Gsl~l~~~r~~~t~P~vkLg~~F~kv~~f~~rfp~iP~ileLdhLtVsGdV~FGknV~LkGtViIia~ 471 (498)
T KOG2638|consen 392 LLVMSNLYDLDNGSLTLSPSRFGPTPPLVKLGSEFKKVEDFLGRFPGIPDILELDHLTVSGDVWFGKNVSLKGTVIIIAN 471 (498)
T ss_pred eeeecceeeccCCeEEechhhcCCCCCeeecchhhhHHHHHHhcCCCCCccceeceEEEeccEEeccceEEeeEEEEEec
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEecCCCCeeecceeeccCCC
Q 006541 618 RGMKLEIPDGIVLENKEIKDVADI 641 (641)
Q Consensus 618 ~~~~~~ip~g~~l~n~~~~~~~~~ 641 (641)
+|.+++||||++|||++|+||++|
T Consensus 472 ~~~~i~IP~gsVLEn~~v~gn~~i 495 (498)
T KOG2638|consen 472 EGDRIDIPDGSVLENKIVSGNLRI 495 (498)
T ss_pred CCCeeecCCCCeeecceEeccccc
Confidence 999999999999999999999987
No 2
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=100.00 E-value=1.5e-118 Score=976.49 Aligned_cols=410 Identities=58% Similarity=0.924 Sum_probs=391.7
Q ss_pred cccCCCCCccccCCCcCCCcccHHHHHhhcCcEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCC
Q 006541 231 EIDSKDEILVVPYESLASISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGC 310 (641)
Q Consensus 231 ~l~~~~~~~~~~y~~l~~~~~~~~~~~~~l~k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~ 310 (641)
.|+++.++.+++|++|++.+.+..+++++|+|+|||+|||||||||||++|||+++|++|+||||++++||++++++||+
T Consensus 48 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~L~k~avlkLnGGlGTrmG~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~ 127 (469)
T PLN02474 48 KIQTPTDEVVVPYDKLAPVPEDPEETKKLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGC 127 (469)
T ss_pred HccCCchhhCcChhhccccccchhHHHHHHhcEEEEEecCCcccccCCCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCC
Confidence 36656689999999998766555678899999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCccchHHHHHHHHHcCCCCceEEEEecCCccccccCC-------CCCCCccccCCCChhhHHHHHHhcChhH
Q 006541 311 NVPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQQPHEKSFE-------GHSRKDKLYPSSDHSVVFLSLMKSGTLD 383 (641)
Q Consensus 311 ~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~~f~Q~~~P~~~~~~-------~~~~~~~~~P~GhG~di~~aL~~sG~Ld 383 (641)
.|||+||||+.||++|++||++|++|+.+|++|+|+++||++..+ +....++||||||| |+|.||++||+||
T Consensus 128 ~vPl~iMtS~~T~~~T~~~l~k~~~~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhG-d~y~aL~~sG~Ld 206 (469)
T PLN02474 128 NVPLLLMNSFNTHDDTQKIVEKYTNSNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHG-DVFPSLMNSGKLD 206 (469)
T ss_pred CceEEEECCCchhHHHHHHHHHcCCCccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCc-hHHHHHHhCChHH
Confidence 999999999999999999999999999999999999999999322 22346779999999 9999999999999
Q ss_pred HHHHcCceEEEEEcCcccccccCHHHHHHHhhcCCceEEEEeccCCCCCcceEEEeeCCeEEEEEecCCCccccCC----
Q 006541 384 LLLVQGKEYALVVDSDNVAAVADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGG---- 459 (641)
Q Consensus 384 ~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~~~~~~~evv~k~~~d~kgG~l~~~~g~~~lvEysq~~~~~~~~---- 459 (641)
+|+++|+||+||+|+|||||++||.|||||++++++|+|||++||.+|+|||++|.++|+++++||+|+|++++++
T Consensus 207 ~l~~~G~eyifv~nvDNLga~vDp~~lg~~~~~~~e~~~ev~~Kt~~d~kgG~l~~~dgk~~lvEysqvp~e~~~~f~~~ 286 (469)
T PLN02474 207 ALLSQGKEYVFIANSDNLGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSI 286 (469)
T ss_pred HHHhcCCEEEEEEecCccccccCHHHHHHHHhcCCceEEEEeecCCCCCCccEEEEECCEEEEEEEecCCHHHHHhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred -CCceeeeeceeeeHHHHHHHhhcCCCccceeecccccCCCCchhhhHhhhhHhhcCCCceEEEEeccccccccCCchhh
Q 006541 460 -KFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTSDLL 538 (641)
Q Consensus 460 -~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~~~~~~qlE~~i~d~i~~f~~~~~i~V~R~rF~PvKn~~dll 538 (641)
+|++|||||+|++|+||+++++.+.+.++.|+|+|++++.+++||||||||+|++|+++.+++|||+||+|||||+|++
T Consensus 287 ~kf~~fNtnn~w~~L~~l~~~~~~~~l~~~~I~n~k~~~g~kv~q~Et~ig~ai~~f~~~~~v~VpR~rF~PVK~~~dll 366 (469)
T PLN02474 287 EKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFLPVKATSDLL 366 (469)
T ss_pred ccceeeeeeeEEEEHHHHHHHhhcCCCCceeecCCCCCCCeeEEEeHHHHHHHHHhCCCceEEEEchhhccCCCCCCCHH
Confidence 8999999999999999999998777999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccccCceeeCCCCCCCCCCeEEeCCCcccHHhHhhhcCCCCCCCCcceEEEecceEEccCcEEEEEEEEEcCC
Q 006541 539 LLQSDLYTADEGILVQNPARDNPANPSIELGPEFEKVNNFQSRFKSIPSIINLDSLKVEGDVWFGAGITLKGKVSIVAKR 618 (641)
Q Consensus 539 ~~~sd~y~~~~g~l~~~~~r~~~~~P~i~L~~~f~~~~~~~~rf~~~p~i~~~~~L~V~Gdv~fg~~v~l~G~v~i~a~~ 618 (641)
++|||+|.+++|++.+++.|..+..|.|+|+|.|+++++|++||+++|||++||||||+||||||+||+|+|+|+|+|++
T Consensus 367 ~~rsdly~l~~~~l~~~~~~~~~~~p~IeL~~~f~~v~~f~~rf~~iPsl~~~d~LtV~Gdv~fG~~v~l~G~v~i~~~~ 446 (469)
T PLN02474 367 LVQSDLYTLVDGFVIRNKARTNPSNPSIELGPEFKKVANFLSRFKSIPSIVELDSLKVSGDVWFGSGIVLKGKVTITAKS 446 (469)
T ss_pred HHHHHHHHhccCeEEecCcccCCCCCcEEECcccccHHhHHHhcCCCCCcccCCeEEEeeeeEECCCcEEEEEEEEEcCC
Confidence 99999999999999999998778889999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEecCCCCeeecceeeccCCC
Q 006541 619 GMKLEIPDGIVLENKEIKDVADI 641 (641)
Q Consensus 619 ~~~~~ip~g~~l~n~~~~~~~~~ 641 (641)
|++++||||++|+|++|+||+|+
T Consensus 447 ~~~~~ip~g~~l~~~~~~~~~~~ 469 (469)
T PLN02474 447 GVKLEIPDGAVLENKDINGPEDL 469 (469)
T ss_pred CCeeecCCCcEecceeecccCCC
Confidence 99999999999999999999984
No 3
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=100.00 E-value=3.3e-105 Score=868.90 Aligned_cols=374 Identities=40% Similarity=0.642 Sum_probs=331.5
Q ss_pred CCCCccccCCCcCCCcccHHHHHhhcCcEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcE
Q 006541 235 KDEILVVPYESLASISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPL 314 (641)
Q Consensus 235 ~~~~~~~~y~~l~~~~~~~~~~~~~l~k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl 314 (641)
+.++.+.+|+++...+-+.+....+++|+|||+|||||||||||++|||++||++++||||++++||++|+++||+.|||
T Consensus 29 ~~~~~~~~~~~l~~~~~~~~~~~~~~~kvavl~LaGGlGTrlG~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl 108 (420)
T PF01704_consen 29 PPPEEVVDYESLKEYEWDEGLEAIALGKVAVLKLAGGLGTRLGCSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPL 108 (420)
T ss_dssp -GTGCEEEHHHHHHSCHHHHHHHHHTTCEEEEEEEESBSGCCTESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EE
T ss_pred CChhhcCChhHhcccccccchhHHhhCCEEEEEEcCcccCccCCCCCCcceecCCcccHHHHHHHHHHHHhccccccceE
Confidence 34778889999975443345778899999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCccchHHHHHHHHHcCCCCceEEEEecCCccccccCC-----C-C-C--CCccccCCCChhhHHHHHHhcChhHHH
Q 006541 315 LLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQQPHEKSFE-----G-H-S--RKDKLYPSSDHSVVFLSLMKSGTLDLL 385 (641)
Q Consensus 315 ~iMtS~~T~~~T~~~l~k~~~fg~~v~~f~Q~~~P~~~~~~-----~-~-~--~~~~~~P~GhG~di~~aL~~sG~Ld~l 385 (641)
+||||+.||++|++||++|..+..+|++|+|+++||++..+ . . . ...+||||||| |+|.||++||+||+|
T Consensus 109 ~iMtS~~T~~~T~~~l~kyfg~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhG-di~~aL~~sG~Ld~l 187 (420)
T PF01704_consen 109 YIMTSFNTHEDTRKFLEKYFGLDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHG-DIYRALYNSGLLDKL 187 (420)
T ss_dssp EEEEETTTHHHHHHHHHHGCGSSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGG-GHHHHHHHTTHHHHH
T ss_pred EEecCcccHHHHHHHHHHhcCCCcceEEEeecCcceEeCCCccccccccccccchhhccCCCCc-ceehhhhccChHHHH
Confidence 99999999999999999954444579999999999999332 1 1 1 24679999999 999999999999999
Q ss_pred HHcCceEEEEEcCcccccccCHHHHHHHhhcCCceEEEEeccCCCCCcceEEEeeCCeEEEEEecCCCccccCC-----C
Q 006541 386 LVQGKEYALVVDSDNVAAVADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGG-----K 460 (641)
Q Consensus 386 ~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~~~~~~~evv~k~~~d~kgG~l~~~~g~~~lvEysq~~~~~~~~-----~ 460 (641)
+++|+||+||+|+||||+++||.||||+++++++|+||||+||.+|+|||++|+++|+++++||+|+|++++++ +
T Consensus 188 ~~~G~eyifv~nvDNL~a~~Dp~~lG~~~~~~~~~~~evv~Kt~~dek~Gvl~~~~G~~~vvEysqip~~~~~~~~~~~~ 267 (420)
T PF01704_consen 188 LARGIEYIFVSNVDNLGAVVDPVFLGYMIEKNADFGMEVVPKTSPDEKGGVLCRYDGKLQVVEYSQIPKEHMAEFKDIKG 267 (420)
T ss_dssp HHTT--EEEEEETTBTT-TT-HHHHHHHHHTT-SEEEEEEE-CSTTTSSEEEEEETTEEEEEEGGGS-HHGHHHHTSTTT
T ss_pred HHcCCeEEEEEecCCcccccCHHHHHHHHhccchhheeeeecCCCCCceeEEEEeCCccEEEEeccCCHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996543 8
Q ss_pred CceeeeeceeeeHHHHHHHhhcCCCccceeeccccc----CCCCchhhhHhhhhHhhcCCCceEEEEeccccccccCCch
Q 006541 461 FKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEV----NDDQIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTSD 536 (641)
Q Consensus 461 ~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v----~~~~~~qlE~~i~d~i~~f~~~~~i~V~R~rF~PvKn~~d 536 (641)
+++|||||||++|+||+++++...+.||+|+|+|++ ++++++|||||||++|.+|+++.+++|||+||+|||||+|
T Consensus 268 ~~~FntnNi~~~l~~l~~~~~~~~~~Lp~h~a~Kki~~~d~~~~~~q~Et~i~~~i~~f~~~~~v~V~R~rF~PvKn~~d 347 (420)
T PF01704_consen 268 FLLFNTNNIWFSLDFLKRLLERDELQLPIHVAKKKIPYVDNGIKVIQFETAIGFAIFQFDNSFAVEVPRDRFAPVKNTSD 347 (420)
T ss_dssp SBEEEEEEEEEEHHHHHHHHHTTTCCS-EEEEEEESSEECTEEEEEEEECGGGGGGGGCTSEEEEEE-GGG--B-SSHHH
T ss_pred ceEEEeceeeEEHHHHHHHHHhccccCccEEcchhcccccCCccEEeehhhhhchHhhccCcEEEEEcHHHcCCccccCc
Confidence 999999999999999999999888999999999999 4789999999999999999999999999999999999999
Q ss_pred hhhhhhhhcccccCceeeCCCCCCCCCCeEEeCCCcccHHhHhhhcCCCCCCCCcceEEEecceEEccCcEEE
Q 006541 537 LLLLQSDLYTADEGILVQNPARDNPANPSIELGPEFEKVNNFQSRFKSIPSIINLDSLKVEGDVWFGAGITLK 609 (641)
Q Consensus 537 ll~~~sd~y~~~~g~l~~~~~r~~~~~P~i~L~~~f~~~~~~~~rf~~~p~i~~~~~L~V~Gdv~fg~~v~l~ 609 (641)
||++|||+|.+++|.+.++|.|.....|+|+||++|+++++|++|||++|||++|+||+|+||||||+||+||
T Consensus 348 Ll~~~Sd~y~~~~~~~~~~~~~~~~~~p~i~lg~~f~~v~~~~~r~~~ip~l~~~~~l~v~gdv~fg~~v~lk 420 (420)
T PF01704_consen 348 LLLVRSDLYDLDDGTLVRNPLRAFHTRPLIKLGDHFKKVDDFEKRFPSIPSLLELDSLTVSGDVTFGKNVVLK 420 (420)
T ss_dssp HHHHHSTTEEEETTEEEEHCCHCSSCHHEEEECGGGSSHHHHHHHBSSS-BETTEEEEEEESSEEE-TT-EEE
T ss_pred ceeeccceeccccceeeecccccCCCCCeeccCcccCchHHhhhhcCCCCCcccCCcceEecceEECCCcEeC
Confidence 9999999999999999999999877889999999999999999999999999999999999999999999997
No 4
>PLN02830 UDP-sugar pyrophosphorylase
Probab=100.00 E-value=6e-92 Score=790.36 Aligned_cols=397 Identities=20% Similarity=0.242 Sum_probs=358.1
Q ss_pred CCCccccCCCcCCCcccHHHHHhhcCcEEEEEEcCCCCCCCCCCCCCeeeec--CCCCChHHHHHHHHHHHHh-------
Q 006541 236 DEILVVPYESLASISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEV--KNNLTPLDLMVDQVESLNS------- 306 (641)
Q Consensus 236 ~~~~~~~y~~l~~~~~~~~~~~~~l~k~avv~LaGGlGTrlG~~~pK~~l~v--~~~~tfldl~~~qi~~l~~------- 306 (641)
+++.+..|++... ....+.|.++|+|+|||+|||||||||||++||++||| .+|+||||++++||+++++
T Consensus 103 p~~~~~~~~~~~~-~~~~~~Gl~~l~kvavllLaGGlGTRLG~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~ 181 (615)
T PLN02830 103 PEGEVLEYGSEEF-VELEEAGLREAGNAAFVLVAGGLGERLGYSGIKVALPTETATGTCYLQLYIESILALQERAKKRKA 181 (615)
T ss_pred Cccccccccchhh-hHHHHHHHHHhCcEEEEEecCCcccccCCCCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcc
Confidence 4456667776432 22224889999999999999999999999999999999 4899999999999999965
Q ss_pred hhCCCCcEEEecCccchHHHHHHHHHcCCCCc---eEEEEecCCccccccCC-----CC--CCCccccCCCChhhHHHHH
Q 006541 307 KYGCNVPLLLMNTAETHDRVQKVLEKYSNSKV---DIHSLSLSQQPHEKSFE-----GH--SRKDKLYPSSDHSVVFLSL 376 (641)
Q Consensus 307 ~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~---~v~~f~Q~~~P~~~~~~-----~~--~~~~~~~P~GhG~di~~aL 376 (641)
.+++.|||+||||++||++|++||++|+|||+ ||++|+|+++||++..+ ++ +++++|+||||| |+|.||
T Consensus 182 ~~~~~IPl~IMTS~~T~~~T~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhG-di~~aL 260 (615)
T PLN02830 182 KKGRKIPLVIMTSDDTHARTLKLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHG-DVHALL 260 (615)
T ss_pred cCCCCceEEEECCcchhHHHHHHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCcc-HHHHHH
Confidence 56799999999999999999999999999998 69999999999998222 22 678999999999 999999
Q ss_pred HhcChhHHHHHcCceEEEEEcCcc-cccccCHHHHHHHhhcCCceEEEEeccCCCCCcceEEEe---eCCe--EEEEEec
Q 006541 377 MKSGTLDLLLVQGKEYALVVDSDN-VAAVADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINL---RPGK--FQLVDIT 450 (641)
Q Consensus 377 ~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~Dp~~lg~~~~~~~~~~~evv~k~~~d~kgG~l~~---~~g~--~~lvEys 450 (641)
++||+||+|+++|+||+||+|||| |++.+||.|||||+.++++|+||||+|++ .+++|++|+ .||+ +++|||+
T Consensus 261 ~~sGlLd~l~~~G~~yi~v~~vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~-~E~vGvi~~~~~~dG~~l~~vVEYs 339 (615)
T PLN02830 261 YSSGLLDKWLSAGKKWVVFFQDTNGLVFKAIPAALGVSATKGFDMNSLAVPRKA-KEAIGAIAKLTHKDGREMVINVEYN 339 (615)
T ss_pred HHCCCHHHHHHcCCEEEEEEeccchhhhcccHHHhHHHHhcCCceEEEEEECCC-CcccceEEEEecCCCCeeeEEEeec
Confidence 999999999999999999999999 99999999999999999999999999955 577888887 4777 6899999
Q ss_pred CCCc---------cccCC--CCcee--eeeceeeeHHHHHHHhhcCCCccceeecccccC-CCCchhhhHhhhhHhhcCC
Q 006541 451 QNPT---------KQSGG--KFKFI--NTRSMWVNLRAIKRLIDTDELKVENFSSSKEVN-DDQIISRGTAADSAIQFFD 516 (641)
Q Consensus 451 q~~~---------~~~~~--~~~~f--Ntnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~-~~~~~qlE~~i~d~i~~f~ 516 (641)
|+++ +++.+ .|++| ||||||++|++|++++++..+.||+++|+|++| +..++|+||.|+.+++.|+
T Consensus 340 e~~~ll~~a~~p~g~l~~~~~~s~FPgNtN~L~v~L~a~~~~l~~~~~~lp~ivNpK~~d~~~~v~q~~trle~~mq~f~ 419 (615)
T PLN02830 340 QLDPLLRATGHPDGDVNDETGYSPFPGNINQLILKLGPYVKELAKTGGVIEEFVNPKYKDATKTAFKSPTRLECMMQDYP 419 (615)
T ss_pred ccCHHHHhccCCCcccccccccccCCCCceeeEeeHHHHHHHHHhCCCccceeccCcccCCCCceeecchHHHHHHHHHh
Confidence 9854 44443 78888 999999999999999998889999999999998 6788999999999999998
Q ss_pred CceEE------EE--eccccccccCC-c--------------------------hhhhhhhhhcccccCceeeCCCCCCC
Q 006541 517 HTIGI------NV--AQSRYLPVNST-S--------------------------DLLLLQSDLYTADEGILVQNPARDNP 561 (641)
Q Consensus 517 ~~~~i------~V--~R~rF~PvKn~-~--------------------------dll~~~sd~y~~~~g~l~~~~~r~~~ 561 (641)
++.++ .| ||.||+||||+ + |+|+++||+|..+++.....+.+..+
T Consensus 420 ~~~~~~~~vg~~v~~~~~~f~PVKn~~s~a~~k~~~~~~~~~~~s~e~d~y~~~~llL~~s~~~~~~~~~~~~~~~~~~~ 499 (615)
T PLN02830 420 KTLPPSAKVGFTVFDNWLAYSPVKNSPADGAAKVPEGNPTHSATSGEMAIYGANCLILRKAGADVEEPVEDVVFNGIEVE 499 (615)
T ss_pred hhcCcccccCceecCchheeccccCChHHhhhhcccCCCccCcchhhHHHHHHHHHHHHhcCCccccCccccccCCcccC
Confidence 77766 99 89999999999 8 99999999999999887677777778
Q ss_pred CCCeEEeCCCcc-cHHhHhhhc-CCCCCCCCcceEEEecceEEccCcEEEEEEEEEcCCCCeEecCCCCeeecceee
Q 006541 562 ANPSIELGPEFE-KVNNFQSRF-KSIPSIINLDSLKVEGDVWFGAGITLKGKVSIVAKRGMKLEIPDGIVLENKEIK 636 (641)
Q Consensus 562 ~~P~i~L~~~f~-~~~~~~~rf-~~~p~i~~~~~L~V~Gdv~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l~n~~~~ 636 (641)
.+|.|.|+|.|+ ++++|++|| +++|+|++||+|+|+|+++||+||.|+|+|+|.|.+|++++| +|++|+|+...
T Consensus 500 ~~P~I~L~p~f~~~~~~~~~k~~~~~~si~~~s~L~v~G~~~~~~~v~LdG~viI~a~~~~~~~i-~g~~v~N~g~~ 575 (615)
T PLN02830 500 VGPRIVLKPAFALTFSELKKKVAPGSVKISQRSTLVLEGADIVIENLSLDGALVVRAVPGAEVTV-GGLRVKNKGWT 575 (615)
T ss_pred CCCeEEECchhhhHHHHHHHHhcCCCCcccCCCeEEEEeeeEEecCeEEEEEEEEEcCCCCeEEe-cCeEEecCCcE
Confidence 899999999999 999999999 999999999999999999999999999999999999999999 89999998643
No 5
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=100.00 E-value=1.2e-90 Score=724.39 Aligned_cols=287 Identities=44% Similarity=0.733 Sum_probs=275.7
Q ss_pred cCcEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCce
Q 006541 260 LDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVD 339 (641)
Q Consensus 260 l~k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~ 339 (641)
|+|+|||+||||||||||+++|||++||.+++||||++++||++++++||+.|||+||||+.||++|++||++|++...+
T Consensus 1 l~kvavl~LaGG~GTRLG~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~~~~~ 80 (300)
T cd00897 1 LNKLVVLKLNGGLGTSMGCTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAGVNVD 80 (300)
T ss_pred CCcEEEEEecCCcccccCCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCCCccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999987889
Q ss_pred EEEEecCCccccccCC-------CCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccCHHHHHH
Q 006541 340 IHSLSLSQQPHEKSFE-------GHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADPKIFNH 412 (641)
Q Consensus 340 v~~f~Q~~~P~~~~~~-------~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~ 412 (641)
|++|+|+++||++..+ +++++++|+||||| |+|.||++||+||+|+++|+||+||+|||||||++||.||||
T Consensus 81 v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG-~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~lg~ 159 (300)
T cd00897 81 IHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHG-DIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRILNH 159 (300)
T ss_pred eEEEecCCcccCccccCccccccCCCcceeeccCCCc-hHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHHHH
Confidence 9999999999999322 35789999999999 999999999999999999999999999999999999999999
Q ss_pred HhhcCCceEEEEeccCCCCCcceEEEeeCCeEEEEEecCCCccccCC-----CCceeeeeceeeeHHHHHHHhhcCCCcc
Q 006541 413 LIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGG-----KFKFINTRSMWVNLRAIKRLIDTDELKV 487 (641)
Q Consensus 413 ~~~~~~~~~~evv~k~~~d~kgG~l~~~~g~~~lvEysq~~~~~~~~-----~~~~fNtnni~~~l~~l~~~~~~~~~~l 487 (641)
|++++++|+||||+|+.+|+|||++|+++|+++++||+|+|++++++ +|++|||||+||+|+||+++++...+.|
T Consensus 160 ~~~~~~~~~~evv~Kt~~dek~G~l~~~~g~~~vvEyse~p~e~~~~~~~~~~~~~~nt~n~~~~l~~L~~~~~~~~~~l 239 (300)
T cd00897 160 MVDNKAEYIMEVTDKTRADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWVNLKAVKRVVEENALDL 239 (300)
T ss_pred HHhcCCceEEEEeecCCCCCcccEEEEECCEEEEEEeccCCHHHHHhhcCcccceEEEEeEEEEEHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999988654 8999999999999999999998777889
Q ss_pred ceeecccccC-CCCchhhhHhhhhHhhcCCCceEEEEeccccccccCCchhhhhhhhhccc
Q 006541 488 ENFSSSKEVN-DDQIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTSDLLLLQSDLYTA 547 (641)
Q Consensus 488 p~~~n~K~v~-~~~~~qlE~~i~d~i~~f~~~~~i~V~R~rF~PvKn~~dll~~~sd~y~~ 547 (641)
|+|+|.|+++ +++++|||+||||+|++|+++.+++|||+||+||||++|||++|||+|.+
T Consensus 240 p~h~~~K~v~p~~~~~qlE~~i~da~~~~~~~~~~eV~R~rF~PvKn~~dll~~~sd~y~~ 300 (300)
T cd00897 240 EIIVNPKTVDGGLNVIQLETAVGAAIKNFDNALGVNVPRSRFLPVKTTSDLLLVRSDLYSL 300 (300)
T ss_pred CeeecccccCCCCCEEEeHhHhhhHHHhCCCcEEEEEChhhcCCCCChHHHHhhhhccccC
Confidence 9999999997 58999999999999999999999999999999999999999999999974
No 6
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-78 Score=651.63 Aligned_cols=380 Identities=30% Similarity=0.463 Sum_probs=346.6
Q ss_pred ccCCCCCccccCCCcCCCcccHHHHHhhcCcEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCC
Q 006541 232 IDSKDEILVVPYESLASISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCN 311 (641)
Q Consensus 232 l~~~~~~~~~~y~~l~~~~~~~~~~~~~l~k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~ 311 (641)
++++.++.++.|++.+.... ...+..++|+|||+|||||||||||+||||+++|++|+||||++++||++++++|+++
T Consensus 77 i~~~~~d~~~~~~~~~~~~~--~l~~~~~~klAvl~LaGGqGtrlG~~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~ 154 (472)
T COG4284 77 IRPPNPDDVVDYEKKILEGW--GLLKIKLGKLAVLKLAGGQGTRLGCDGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVD 154 (472)
T ss_pred cCCCChhhhccchhhccchh--hhhhhhcCceEEEEecCCcccccccCCCceeEEecCCCcHHHHHHHHHHHHHHHhCCC
Confidence 44455788999988765331 1334468999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCccchHHHHHHHHHcCCCCc---eEEEEecCCccccc-----cCCCCCCC-ccccCCCChhhHHHHHHhcChh
Q 006541 312 VPLLLMNTAETHDRVQKVLEKYSNSKV---DIHSLSLSQQPHEK-----SFEGHSRK-DKLYPSSDHSVVFLSLMKSGTL 382 (641)
Q Consensus 312 iPl~iMtS~~T~~~T~~~l~k~~~fg~---~v~~f~Q~~~P~~~-----~~~~~~~~-~~~~P~GhG~di~~aL~~sG~L 382 (641)
|||+|||| .|+++|..+|+.++|||+ ||.||+|+.+||+. |.....++ ++|+|+||| |+|.||+.||++
T Consensus 155 vP~~iMtS-~nt~~t~s~f~~~~Y~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG-~lf~aL~~SG~l 232 (472)
T COG4284 155 VPLYIMTS-LNTEETDSYFKSNDYFGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNG-DLFKALKSSGIL 232 (472)
T ss_pred CCEEEEec-CCcHHHHHHHhhhhhcCCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCc-cHHHHHHhcchH
Confidence 99999999 888999999999999998 59999999999655 33333344 999999999 999999999999
Q ss_pred HHHHHcCceEEEEEcCcccccccCHHHHHHHhhcCCceEEEEeccCCCCCcceEEEeeCCeEEEEEecCCCccccCC---
Q 006541 383 DLLLVQGKEYALVVDSDNVAAVADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGG--- 459 (641)
Q Consensus 383 d~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~~~~~~~evv~k~~~d~kgG~l~~~~g~~~lvEysq~~~~~~~~--- 459 (641)
++|.++|+||+||+||||||+++||.|||+++.++++++||+|.|+.+++|||+++.++|+++|+||+|+|+++.++
T Consensus 233 e~l~~~G~e~lfV~nIDNL~~~vD~~~lg~~~~~~~e~~~e~t~Kt~a~ekvG~Lv~~~g~~rllEysev~~~~~~~~~s 312 (472)
T COG4284 233 EKLIAQGIEYLFVSNIDNLGATVDLKFLGFMAETNYEYLMETTDKTKADEKVGILVTYDGKLRLLEYSEVPNEHREEFTS 312 (472)
T ss_pred HHHHhcCceEEEEecccccccccCHHHHHHHHhcCcceeEEEeecccccccceEEEEeCCceEEEEEecCChhHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987764
Q ss_pred --CCceeeeeceeeeHHHHHHHhhcCCCccceeecccccCCC-CchhhhHhhhhHhhcCCCceEEEEeccccccccCCch
Q 006541 460 --KFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDD-QIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTSD 536 (641)
Q Consensus 460 --~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~~~-~~~qlE~~i~d~i~~f~~~~~i~V~R~rF~PvKn~~d 536 (641)
.+++|||||||+++..++.+.+.....||+|.|.|+++.. +++|++|++++++..|++ . |.| .|
T Consensus 313 ~~~~~~~n~Nni~l~~~~~~~l~~~~~l~Lpi~~a~Kki~~~~~~~~~~t~i~~~i~kfe~-~--------FI~----fD 379 (472)
T COG4284 313 DGKLKYFNTNNIWLHLFSVKFLKEAAYLNLPIHKAIKKIPQLDNIIQLTTAIGKNISKFEN-E--------FIP----FD 379 (472)
T ss_pred ccceeeeccccceeehhHHHHHHhhhccCCcchhhhcccCccccceeeccccccchhhccc-c--------ccc----ee
Confidence 7999999999999999999988777999999999999855 699999999999999986 2 888 99
Q ss_pred hhhhhhhhcccccCceeeCCCCCCCCCCeEEeCCC-cccHHhHhhhcCCCCCCCCcceEEEecceEEccCcEEEEEEEEE
Q 006541 537 LLLLQSDLYTADEGILVQNPARDNPANPSIELGPE-FEKVNNFQSRFKSIPSIINLDSLKVEGDVWFGAGITLKGKVSIV 615 (641)
Q Consensus 537 ll~~~sd~y~~~~g~l~~~~~r~~~~~P~i~L~~~-f~~~~~~~~rf~~~p~i~~~~~L~V~Gdv~fg~~v~l~G~v~i~ 615 (641)
|+.+.|| +++.+...| |.....|++.++.+ |.++..+..+++.+|.++++++++|+|+|.||++++|+ .
T Consensus 380 lF~~~s~----~~~~~~~vp-R~~~f~Plkn~~~~~~~~~~~~~~~~~~~~~~~e~~~~~is~nv~~~~~~~lk-----~ 449 (472)
T COG4284 380 LFLYKSD----ENGGLLLVP-RFGEFSPLKNLEGSHFDNVETFTCGIPRIPLILELEGLTISGNVLFGRNVTLK-----Y 449 (472)
T ss_pred eeEEEec----CCCceEecc-ccCCCCchhhccCCCCCcHHhhhcccccccchhhhccceecCceEeeecceee-----e
Confidence 9999998 778888888 65456799999655 99999999999999999999999999999999999999 6
Q ss_pred cCCCCeEecCCCCeeecceeecc
Q 006541 616 AKRGMKLEIPDGIVLENKEIKDV 638 (641)
Q Consensus 616 a~~~~~~~ip~g~~l~n~~~~~~ 638 (641)
+.+...++||+|+++||.+|.|+
T Consensus 450 ~~e~~~l~~~~~s~~e~~ii~~~ 472 (472)
T COG4284 450 ASENTSLCIPNKSFLENVIITGN 472 (472)
T ss_pred cCCCceEeccCCeeeeeeeEecC
Confidence 89999999999999999999985
No 7
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=100.00 E-value=2.1e-76 Score=648.73 Aligned_cols=322 Identities=15% Similarity=0.161 Sum_probs=280.6
Q ss_pred ccCCCCCccccCCCcCCCc--ccHHHHHhhc--CcEEEEEEcCCCCCCCCCCCCCeeeecC--CCCChHHHHHHHHHHHH
Q 006541 232 IDSKDEILVVPYESLASIS--EDIAETKMLL--DKLVVVKFNGALGTNMGFSGPKSAIEVK--NNLTPLDLMVDQVESLN 305 (641)
Q Consensus 232 l~~~~~~~~~~y~~l~~~~--~~~~~~~~~l--~k~avv~LaGGlGTrlG~~~pK~~l~v~--~~~tfldl~~~qi~~l~ 305 (641)
+.+.+++.+..++++.... .-.+.|.+++ +|||||+||||||||||+++|||+++|+ +++||||++++||++++
T Consensus 82 i~P~p~~~~~~~~~~~~~~~~~~~~~Gl~~I~~gkvavvlLAGGqGTRLG~~~PKg~~~Iglps~kslfql~~e~I~~lq 161 (493)
T PLN02435 82 IEPVPENSVSTVEERTPEDRERWWKMGLKAISEGKLAVVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCVQ 161 (493)
T ss_pred cCCCChhhccchhccChHHHHHHHHHHHHHHhcCCEEEEEeCCCcccccCCCCCccceecCCCCCCcHHHHHHHHHHHHH
Confidence 3333344455555543211 1113788888 8999999999999999999999999887 99999999999999998
Q ss_pred h----------hhCCCCcEEEecCccchHHHHHHHHHcCCCCc---eEEEEecCCccccccCC----CCCCCccccCCCC
Q 006541 306 S----------KYGCNVPLLLMNTAETHDRVQKVLEKYSNSKV---DIHSLSLSQQPHEKSFE----GHSRKDKLYPSSD 368 (641)
Q Consensus 306 ~----------~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~---~v~~f~Q~~~P~~~~~~----~~~~~~~~~P~Gh 368 (641)
+ .+++.||||||||+.||++|++||++|+|||+ ||++|+|+++||++..+ +++.+++|+||||
T Consensus 162 ~la~~~~~~~~~~~~~IPl~IMTS~~T~~~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~Gn 241 (493)
T PLN02435 162 RLAAQASSEGPGRPVTIHWYIMTSPFTDEATRKFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGN 241 (493)
T ss_pred HHHHhhcccccCCCCceeEEEeCCcchhHHHHHHHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCC
Confidence 7 24688999999999999999999999999998 69999999999999322 5677999999999
Q ss_pred hhhHHHHHHhcChhHHHHHcCceEEEEEcCcc-cccccCHHHHHHHhhcCCceEEEEeccCCCCCcceEEEe--eCCeEE
Q 006541 369 HSVVFLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINL--RPGKFQ 445 (641)
Q Consensus 369 G~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~Dp~~lg~~~~~~~~~~~evv~k~~~d~kgG~l~~--~~g~~~ 445 (641)
| |+|.||++||+||+|+++|+||+||+|+|| |++++||.|||||+++++||+||||+|+.++||||++|+ .+|+++
T Consensus 242 G-giy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~~EkvG~i~~~~~~g~~~ 320 (493)
T PLN02435 242 G-GVYAALKSSRLLEDMASRGIKYVDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRRGKGGPLT 320 (493)
T ss_pred c-HHHHHHHHCCcHHHHHhcCCEEEEEEecccccccccCHHHHHHHHhcCCceEEEeeecCCCCCceeEEEEecCCCCEE
Confidence 9 999999999999999999999999999999 999999999999999999999999999999999999998 589999
Q ss_pred EEEecCCCccccCC--------CCceeeeeceeeeHHHHHHHhhcCCCccceeecccccC----CCCchhhhHhhhhHhh
Q 006541 446 LVDITQNPTKQSGG--------KFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVN----DDQIISRGTAADSAIQ 513 (641)
Q Consensus 446 lvEysq~~~~~~~~--------~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~----~~~~~qlE~~i~d~i~ 513 (641)
++||+|++++..+. .|.+.|++|++++++||+++.+.....||||+|.|+++ .+++||||+||||+|+
T Consensus 321 vvEYsEl~~~~~~~~~~~~g~L~~~~gnI~~h~fs~~fL~~~~~~~~~~l~~H~A~Kkip~~~~~~ngiK~E~FiFDvf~ 400 (493)
T PLN02435 321 VVEYSELDQAMASAINQQTGRLRYCWSNVCLHMFTLDFLNQVANGLEKDSIYHLAEKKIPSIHGYTMGLKLEQFIFDAFP 400 (493)
T ss_pred EEEeccCCHHHHhccCccccccccchhhHHHhhccHHHHHHHHHhhhhcCCceeeccccCccCCCcceEEeeeeeecchh
Confidence 99999999865332 57778999999999999999765445699999999995 4689999999999999
Q ss_pred cCCCceEEEEec-cccccccCCch-----hhhhhhhhcccccCceee
Q 006541 514 FFDHTIGINVAQ-SRYLPVNSTSD-----LLLLQSDLYTADEGILVQ 554 (641)
Q Consensus 514 ~f~~~~~i~V~R-~rF~PvKn~~d-----ll~~~sd~y~~~~g~l~~ 554 (641)
+++++.+++|+| ++|+||||+++ ...+|.+++.++..++..
T Consensus 401 ~a~~~~~~eV~R~~EFaPlKN~~g~~~Dsp~tar~~l~~~~~~wl~~ 447 (493)
T PLN02435 401 YAPSTALFEVLREEEFAPVKNANGSNFDTPESARLLVLRLHTRWVVA 447 (493)
T ss_pred hcCceEEEEEchhhccCcccCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999998 58999999953 577888887777655554
No 8
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=100.00 E-value=6.4e-74 Score=606.95 Aligned_cols=280 Identities=18% Similarity=0.280 Sum_probs=261.7
Q ss_pred HHHHhhcC--cEEEEEEcCCCCCCCCCCCCCeeeecC--CCCChHHHHHHHHHHHHhhhC------CCCcEEEecCccch
Q 006541 254 AETKMLLD--KLVVVKFNGALGTNMGFSGPKSAIEVK--NNLTPLDLMVDQVESLNSKYG------CNVPLLLMNTAETH 323 (641)
Q Consensus 254 ~~~~~~l~--k~avv~LaGGlGTrlG~~~pK~~l~v~--~~~tfldl~~~qi~~l~~~~g------~~iPl~iMtS~~T~ 323 (641)
+.|.+++. ++|+|+||||+|||||+++||+++||. +++||||++++|+++++..++ +.|||+||||+.||
T Consensus 5 ~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~ 84 (323)
T cd04193 5 EAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATH 84 (323)
T ss_pred HHhHHHHhcCCEEEEEECCCcccccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHh
Confidence 47889997 999999999999999999999999997 799999999999999999888 88999999999999
Q ss_pred HHHHHHHHHcCCCCc---eEEEEecCCccccccCC----CCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEE
Q 006541 324 DRVQKVLEKYSNSKV---DIHSLSLSQQPHEKSFE----GHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVV 396 (641)
Q Consensus 324 ~~T~~~l~k~~~fg~---~v~~f~Q~~~P~~~~~~----~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~ 396 (641)
++|++||+++++||+ +|++|.|+++||++..+ +++++++|+|+||| |+|.||++||+|++|+++|+||+||+
T Consensus 85 ~~t~~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG-~i~~aL~~sG~l~~l~~~G~~yi~v~ 163 (323)
T cd04193 85 EETRKFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNG-GLYKALQTAGILEDMKKRGIKYIHVY 163 (323)
T ss_pred HHHHHHHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCch-HHHHHHHHCChHHHHHhCCCEEEEEE
Confidence 999999999999999 79999999999998332 46788999999999 99999999999999999999999999
Q ss_pred cCcc-cccccCHHHHHHHhhcCCceEEEEeccCCCCCcceEEEeeCCeEEEEEecCCCccccCC-----CCceeeeecee
Q 006541 397 DSDN-VAAVADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGG-----KFKFINTRSMW 470 (641)
Q Consensus 397 nvDN-L~~~~Dp~~lg~~~~~~~~~~~evv~k~~~d~kgG~l~~~~g~~~lvEysq~~~~~~~~-----~~~~fNtnni~ 470 (641)
|+|| |++++||.||||++++++||++|||+|+.+++|||++|+++|+++++||+|+|+++.++ ++ .||+||||
T Consensus 164 ~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l~~~~g~~~vvEysel~~~~~~~~~~~g~l-~f~~~ni~ 242 (323)
T cd04193 164 SVDNILVKVADPVFIGFCISKGADVGAKVVRKRYPTEKVGVVVLVDGKPQVVEYSEISDELAEKRDADGEL-QYNAGNIA 242 (323)
T ss_pred ecCcccccccCHHHhHHHHHcCCceEEEEEECCCCCCceeEEEEECCeEEEEEeecCCHHHHhccCcCCcE-ecccchHh
Confidence 9999 99999999999999999999999999999999999999999999999999999987654 45 57999988
Q ss_pred e---eHHHHHHHhhcCCCccceeecccccC------------CCCchhhhHhhhhHhhcCCCceEEEEecc-ccccccCC
Q 006541 471 V---NLRAIKRLIDTDELKVENFSSSKEVN------------DDQIISRGTAADSAIQFFDHTIGINVAQS-RYLPVNST 534 (641)
Q Consensus 471 ~---~l~~l~~~~~~~~~~lp~~~n~K~v~------------~~~~~qlE~~i~d~i~~f~~~~~i~V~R~-rF~PvKn~ 534 (641)
+ +++||+++++.....||+|+|+|+++ ++|++|||+||||+|++|+++.+++|+|+ ||+||||+
T Consensus 243 ~~~fsl~fl~~~~~~~~~~l~~h~a~Kki~~~d~~~~~~~p~~~n~~klE~fifd~~~~~~~~~~~eV~R~~~F~PvKn~ 322 (323)
T cd04193 243 NHFFSLDFLEKAAEMEEPSLPYHIAKKKIPYVDLEGGLVKPDEPNGIKLELFIFDVFPFAKNFVCLEVDREEEFSPLKNA 322 (323)
T ss_pred hheeCHHHHHHHHhhccccCCceEeccccCcccCcCcEeccCCCcEEEeHHHHHHHHHhCCceEEEEEChhhccccCcCC
Confidence 5 55999999987666899999999983 57899999999999999999999999996 89999998
Q ss_pred c
Q 006541 535 S 535 (641)
Q Consensus 535 ~ 535 (641)
+
T Consensus 323 ~ 323 (323)
T cd04193 323 D 323 (323)
T ss_pred C
Confidence 4
No 9
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=100.00 E-value=2.1e-70 Score=574.03 Aligned_cols=269 Identities=17% Similarity=0.179 Sum_probs=243.6
Q ss_pred EEEEEEcCCCCCCCCCCCCCeeeecC--CCCChHHHHHHHHHHHHh----hhCCCCcEEEecCccchHHHHHHHHHcCCC
Q 006541 263 LVVVKFNGALGTNMGFSGPKSAIEVK--NNLTPLDLMVDQVESLNS----KYGCNVPLLLMNTAETHDRVQKVLEKYSNS 336 (641)
Q Consensus 263 ~avv~LaGGlGTrlG~~~pK~~l~v~--~~~tfldl~~~qi~~l~~----~~g~~iPl~iMtS~~T~~~T~~~l~k~~~f 336 (641)
+|||+||||||||||+++|||++||+ +++||||++++||+++++ .+++.|||+||||+.||++|++||++|+||
T Consensus 1 ~a~vllaGG~GTRLG~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n~yF 80 (315)
T cd06424 1 AVFVLVAGGLGERLGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEENNYF 80 (315)
T ss_pred CEEEEecCCCccccCCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHCCcc
Confidence 58999999999999999999999996 999999999999999998 788999999999999999999999999999
Q ss_pred Cc---eEEEEecCCccccccC-------CCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcc-ccccc
Q 006541 337 KV---DIHSLSLSQQPHEKSF-------EGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVA 405 (641)
Q Consensus 337 g~---~v~~f~Q~~~P~~~~~-------~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~ 405 (641)
|+ ||++|+|+++||++.. -+++++++|+||||| |||.||++||+||+|+++|+||+||+|||| |++++
T Consensus 81 Gl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhG-diy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~~a 159 (315)
T cd06424 81 GLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHG-DVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAFKA 159 (315)
T ss_pred CCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCch-HHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhhcc
Confidence 98 6999999999999611 144678999999999 999999999999999999999999999999 99999
Q ss_pred CHHHHHHHhhcCCceEEEEeccCCCCCcceEEEe---eCCeEEE--EEecCCCccccCC--------------CCceeee
Q 006541 406 DPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINL---RPGKFQL--VDITQNPTKQSGG--------------KFKFINT 466 (641)
Q Consensus 406 Dp~~lg~~~~~~~~~~~evv~k~~~d~kgG~l~~---~~g~~~l--vEysq~~~~~~~~--------------~~~~fNt 466 (641)
||.|+|++++++++++++||+| .+.|++|++|+ .+|++++ |||+|++++..+. .|+ .||
T Consensus 160 dP~fiG~~~~~~~d~~~k~v~~-~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~f~-gNi 237 (315)
T cd06424 160 IPAVLGVSATKSLDMNSLTVPR-KPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSPFP-GNI 237 (315)
T ss_pred ChhhEEEEecCCCceEeEEEeC-CCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCcccccccccCC-Cee
Confidence 9999999999999999999986 55789999997 5789887 9999998743221 233 399
Q ss_pred eceeeeHHHHHHHhhcCCCccceeecccccCCC-----CchhhhHhhhhHhhc---CCCceEEEEecc-ccccccCC
Q 006541 467 RSMWVNLRAIKRLIDTDELKVENFSSSKEVNDD-----QIISRGTAADSAIQF---FDHTIGINVAQS-RYLPVNST 534 (641)
Q Consensus 467 nni~~~l~~l~~~~~~~~~~lp~~~n~K~v~~~-----~~~qlE~~i~d~i~~---f~~~~~i~V~R~-rF~PvKn~ 534 (641)
|+++++|++|.+.+++....+|+|+|+|+.|+. +++||||||||++++ ..++.+++|+|. +|+||||.
T Consensus 238 ~~~~f~l~~~~~~l~~~~~~~~~~~n~ky~d~~~~~~~~p~rlE~~m~D~~~~f~~~~~~~~~~~~r~~~fsP~KN~ 314 (315)
T cd06424 238 NQLVFSLGPYMDELEKTKGAIPEFINPKYKDATKTAFKSPTRLECMMQDIPLLFEEDYRVGFTVLDRWLCFSPVKNN 314 (315)
T ss_pred eeEEEeHHHHHHHHhhccccCeeeecCCcccCCCCeecCchHHHHHHHHHHHhhcccceeEEEEEchhhcccccCCC
Confidence 999999999999999877889999999999853 458999999999666 678899999885 89999996
No 10
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=100.00 E-value=2.3e-69 Score=594.68 Aligned_cols=299 Identities=17% Similarity=0.223 Sum_probs=268.8
Q ss_pred HHHHhhcC--cEEEEEEcCCCCCCCCCCCCCeeeecC--CCCChHHHHHHHHHHHHhhh--------CCCCcEEEecCcc
Q 006541 254 AETKMLLD--KLVVVKFNGALGTNMGFSGPKSAIEVK--NNLTPLDLMVDQVESLNSKY--------GCNVPLLLMNTAE 321 (641)
Q Consensus 254 ~~~~~~l~--k~avv~LaGGlGTrlG~~~pK~~l~v~--~~~tfldl~~~qi~~l~~~~--------g~~iPl~iMtS~~ 321 (641)
+.|.++++ |+|||+||||||||||++.||+++||+ +++||||++++||+++++.+ ++.+||+||||+.
T Consensus 96 ~~Gl~~i~~gkvavViLAGG~GTRLg~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~ 175 (482)
T PTZ00339 96 ESGLEIIKKGEVAVLILAGGLGTRLGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSF 175 (482)
T ss_pred HhHHHHHhcCCeEEEEECCCCcCcCCCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcc
Confidence 38899996 699999999999999999999999998 89999999999999998765 5789999999999
Q ss_pred chHHHHHHHHHcCCCCc---eEEEEecCCccccccCC-----CCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEE
Q 006541 322 THDRVQKVLEKYSNSKV---DIHSLSLSQQPHEKSFE-----GHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYA 393 (641)
Q Consensus 322 T~~~T~~~l~k~~~fg~---~v~~f~Q~~~P~~~~~~-----~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi 393 (641)
||+.|++||++|++||+ +|++|+|+++||++..+ +++++++|+|+||| |+|.||++||+||+|+++|+||+
T Consensus 176 t~~~t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnG-giy~aL~~sG~Ld~l~~~Gi~yi 254 (482)
T PTZ00339 176 NHDQTRQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNG-DVFKALAKCSELMDIVRKGIKYV 254 (482)
T ss_pred hHHHHHHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCc-HHHHHHHHCCcHHHHHHcCCEEE
Confidence 99999999999999998 59999999999998322 56678999999999 99999999999999999999999
Q ss_pred EEEcCcc-cccccCHHHHHHHhhcCC-ceEEEEeccCCCCCcceEEEeeCCeEEEEEecCCCccccCC--------CCce
Q 006541 394 LVVDSDN-VAAVADPKIFNHLIQNQI-EYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGG--------KFKF 463 (641)
Q Consensus 394 ~v~nvDN-L~~~~Dp~~lg~~~~~~~-~~~~evv~k~~~d~kgG~l~~~~g~~~lvEysq~~~~~~~~--------~~~~ 463 (641)
||+|||| |++++||.||||++++++ +++.+|+ |+.++|+||++|+.+|++++|||+|++++..+. .|..
T Consensus 255 ~v~~vDN~L~k~~DP~flG~~~~~~~~~~~~kvv-k~~~~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~~~~~g~l~f~~ 333 (482)
T PTZ00339 255 QVISIDNILAKVLDPEFIGLASSFPAHDVLNKCV-KREDDESVGVFCLKDYEWQVVEYTEINERILNNDELLTGELAFNY 333 (482)
T ss_pred EEEecCcccccccCHHHhHHHHHCCchhheeeee-cCCCCCceeEEEEeCCcccEEEEeccChhhhhcccccCCeecccc
Confidence 9999999 899999999999999999 6666666 899999999999999999999999998754322 5788
Q ss_pred eeeeceeeeHHHHHHHhhc-CCCccceeecccccC-------CCCchhhhHhhhhHhhcCCCceEEEEec-cccccccCC
Q 006541 464 INTRSMWVNLRAIKRLIDT-DELKVENFSSSKEVN-------DDQIISRGTAADSAIQFFDHTIGINVAQ-SRYLPVNST 534 (641)
Q Consensus 464 fNtnni~~~l~~l~~~~~~-~~~~lp~~~n~K~v~-------~~~~~qlE~~i~d~i~~f~~~~~i~V~R-~rF~PvKn~ 534 (641)
+|+||+|++++||++++++ ....||+|+|.|+++ .||++|||+||||+|++++++.+++|+| ++|+||||+
T Consensus 334 gnI~~h~fsl~fl~~~~~~~~~~~l~~H~a~Kkip~~~~~~~~png~K~E~FiFDvf~~~~~~~~~ev~R~~eFsPlKNa 413 (482)
T PTZ00339 334 GNICSHIFSLDFLKKVAANRLYESTPYHAARKKIPYINGPTDKTMGIKLEAFIFDIFRYAKNVLILEVDREDEFAPIKNA 413 (482)
T ss_pred cceEEEEEEHHHHHHHhhhhhhhcCCceeeccccCeeCCCCCCcceeeehhhhhhHHHhccccceeeechhhccccccCC
Confidence 8999999999999998763 234699999999995 3689999999999999999999999998 589999999
Q ss_pred ch-----hhhhhhhhcccccCceee
Q 006541 535 SD-----LLLLQSDLYTADEGILVQ 554 (641)
Q Consensus 535 ~d-----ll~~~sd~y~~~~g~l~~ 554 (641)
++ ...+|.|++.++..++..
T Consensus 414 ~g~~~d~p~tar~~l~~~~~~wl~~ 438 (482)
T PTZ00339 414 DGAAADTILNAQKLLLSLHTRWLEA 438 (482)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 64 677888888777655544
No 11
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=100.00 E-value=1.5e-63 Score=515.60 Aligned_cols=242 Identities=28% Similarity=0.417 Sum_probs=225.6
Q ss_pred EEEEEEcCCCCCCCCCCCCCeeeecC--CCCChHHHHHHHHHHHHhhh--CCCCcEEEecCccchHHHHHHHHHcCCCCc
Q 006541 263 LVVVKFNGALGTNMGFSGPKSAIEVK--NNLTPLDLMVDQVESLNSKY--GCNVPLLLMNTAETHDRVQKVLEKYSNSKV 338 (641)
Q Consensus 263 ~avv~LaGGlGTrlG~~~pK~~l~v~--~~~tfldl~~~qi~~l~~~~--g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~ 338 (641)
+||++||||+|||||+++||+++||+ +|+||||++++|+++++..+ ++.|||+||||+.||++|++||++|+....
T Consensus 1 va~viLaGG~GtRLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~~~~~ 80 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQKNS 80 (266)
T ss_pred CEEEEECCCCccccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcCCCCC
Confidence 68999999999999999999999999 99999999999999999988 899999999999999999999999984445
Q ss_pred eEEEEecCCccccccCC----CCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcc-cccccCHHHHHHH
Q 006541 339 DIHSLSLSQQPHEKSFE----GHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVADPKIFNHL 413 (641)
Q Consensus 339 ~v~~f~Q~~~P~~~~~~----~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~Dp~~lg~~ 413 (641)
++++|+|+++||++..+ +++.+++|+|+||| |+|.+|+.||+|++|+++|++|+||+|+|| |+.++||.++||+
T Consensus 81 ~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnG-di~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~~lG~~ 159 (266)
T cd04180 81 YVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHG-DVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPLFIGIA 159 (266)
T ss_pred ceEEEEeCCceEEeCCCCcccCCCCceeeccCCcH-HHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHHHHHHH
Confidence 79999999999999332 45667899999999 999999999999999999999999999999 6666699999999
Q ss_pred hhcCCceEEEEeccCCCCCcceEEEeeC-CeEEEEEecCCCccccCC-------------CCceeeeeceeeeHHHHHHH
Q 006541 414 IQNQIEYCMEVAPVPSIDLRNSLINLRP-GKFQLVDITQNPTKQSGG-------------KFKFINTRSMWVNLRAIKRL 479 (641)
Q Consensus 414 ~~~~~~~~~evv~k~~~d~kgG~l~~~~-g~~~lvEysq~~~~~~~~-------------~~~~fNtnni~~~l~~l~~~ 479 (641)
+.+++++++|||+|+.+|+|||++|.++ |+++++||+|+|+++.++ .|.+|||||+|++|++|+++
T Consensus 160 ~~~~~~~~~kvv~K~~~d~k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~l~~l~~~ 239 (266)
T cd04180 160 IQNRKAINQKVVPKTRNEESGGYRIANINGRVQLLEYDQIKKLLKQKMVNNQIPKDIDDAPFFLFNTNNLINFLVEFKDR 239 (266)
T ss_pred HHcCCCEEEEEEECCCCCCeEEEEEEecCCCEEEEEeccCCHHHHhccccccCcCCCCceeeccceEEEEEEEHHHHHHH
Confidence 9999999999999999999999999998 999999999999875332 67788999999999999999
Q ss_pred hhcCCCccceeecccccCCCCchhhhHhhhhHhhcCCCceEEEEecc-ccccccC
Q 006541 480 IDTDELKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINVAQS-RYLPVNS 533 (641)
Q Consensus 480 ~~~~~~~lp~~~n~K~v~~~~~~qlE~~i~d~i~~f~~~~~i~V~R~-rF~PvKn 533 (641)
++ |+|++|+++.+++|||+ ||+||||
T Consensus 240 ~~----------------------------d~~~~~~~~~~~~v~r~~~F~PvKn 266 (266)
T cd04180 240 VD----------------------------DIIEFTDDIVGVMVHRAEEFAPVKN 266 (266)
T ss_pred HH----------------------------HHHhccCceEEEEeCchhccccCCC
Confidence 75 99999999999999997 9999998
No 12
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=3.2e-59 Score=500.99 Aligned_cols=294 Identities=16% Similarity=0.213 Sum_probs=263.5
Q ss_pred HHHhhc--CcEEEEEEcCCCCCCCCCCCCCeeeecC--CCCChHHHHHHHHHHHHh------hhCCCCcEEEecCccchH
Q 006541 255 ETKMLL--DKLVVVKFNGALGTNMGFSGPKSAIEVK--NNLTPLDLMVDQVESLNS------KYGCNVPLLLMNTAETHD 324 (641)
Q Consensus 255 ~~~~~l--~k~avv~LaGGlGTrlG~~~pK~~l~v~--~~~tfldl~~~qi~~l~~------~~g~~iPl~iMtS~~T~~ 324 (641)
.|..++ +++||++||||||||||+++||++++++ +++|+||+++++|+++++ -.|..||||||||..|++
T Consensus 88 ~G~~~i~~~~~a~~llaGgqgtRLg~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e 167 (477)
T KOG2388|consen 88 EGLRLIAEGKVAVVLLAGGQGTRLGSSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHE 167 (477)
T ss_pred cChhhhhcCcceEEEeccCceeeeccCCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccH
Confidence 566666 5999999999999999999999999999 899999999999999986 346899999999999999
Q ss_pred HHHHHHHHcCCCCc---eEEEEecCCccccccCC----CCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEc
Q 006541 325 RVQKVLEKYSNSKV---DIHSLSLSQQPHEKSFE----GHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVD 397 (641)
Q Consensus 325 ~T~~~l~k~~~fg~---~v~~f~Q~~~P~~~~~~----~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~n 397 (641)
.|++||+.|+|||+ ||++|+|+++||++-.+ +.+.+++++|+||| ++|.|+.++ |.+|.++|++|++|+|
T Consensus 168 ~T~~~f~~~~~FGl~~~qv~~f~Q~~l~c~~~~gk~~le~k~~~a~ap~gng-g~y~ai~~~--l~dm~~rgi~~~hiy~ 244 (477)
T KOG2388|consen 168 ATLEYFESHKYFGLKPEQVTFFQQGKLPCLDLDGKFILEQKNSLAAAPDGNG-GLYRAIKDQ--LEDMAARGIFYDHIYC 244 (477)
T ss_pred HhHhHHhhcCCCCCChhHeeeeecccccccccCCceeccCccchhcCCCCCc-HHHHHHHhh--hhHHHhhcccEEEEEE
Confidence 99999999999999 59999999999999333 57889999999999 999999999 9999999999999999
Q ss_pred Ccc-cccccCHHHHHHHhhcCCceEEEEeccCCCCCcceEEEeeC-CeEEEEEecCCCccccCC------CCce--eeee
Q 006541 398 SDN-VAAVADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRP-GKFQLVDITQNPTKQSGG------KFKF--INTR 467 (641)
Q Consensus 398 vDN-L~~~~Dp~~lg~~~~~~~~~~~evv~k~~~d~kgG~l~~~~-g~~~lvEysq~~~~~~~~------~~~~--fNtn 467 (641)
||| |.+++||.|+||++++++++++++|+|..+.|.+|++|..+ |.+++|||+|+.++.+.. ++.+ .|++
T Consensus 245 VdnvL~k~aDP~fiG~~it~~~d~~~k~V~k~~p~E~vG~~~~~~~G~~~vvEYsEi~~~~a~~~~~d~g~l~~~agnI~ 324 (477)
T KOG2388|consen 245 VDNVLLKVADPVFIGFSITKEADVAAKVVPKINPGEVVGIVALKGQGTPLVVEYSELDAELAKAKAPDGGRLLFNAGNIC 324 (477)
T ss_pred ecceeeEecccceeeEEeechhhHhhhhccccCCCCceEEEEecCCCceeEEEecccCHHHHhhcccccCccccCCccHH
Confidence 999 99999999999999999999999999999999999999998 999999999999775544 3332 3777
Q ss_pred ceeeeHHHHHHHhhcCCCccceeecccccC------------CCCchhhhHhhhhHhhcCCCceEEEEec-cccccccCC
Q 006541 468 SMWVNLRAIKRLIDTDELKVENFSSSKEVN------------DDQIISRGTAADSAIQFFDHTIGINVAQ-SRYLPVNST 534 (641)
Q Consensus 468 ni~~~l~~l~~~~~~~~~~lp~~~n~K~v~------------~~~~~qlE~~i~d~i~~f~~~~~i~V~R-~rF~PvKn~ 534 (641)
|+.+.++||+++.......||+|++.|+++ .|++|++|+|+||+|++.+++.+++||| .+|+|+||.
T Consensus 325 nh~ft~dFLkk~~~~~~~~lp~H~a~kKip~~~~~g~~~kP~kpnGik~E~fifdvf~~~k~f~~meV~Re~efSPlKng 404 (477)
T KOG2388|consen 325 NHFFTLDFLKKVTRASVPLLPYHKAEKKIPYVDSTGKLVKPTKPNGIKLEQFIFDVFPSAKKFGLMEVPREEEFSPLKNG 404 (477)
T ss_pred HHHHhhHHHHHhhhcccccchhhhhhccccccccCCcccCCCCCCceeEEeeeeeecccccceeEEecchhhhcCccccC
Confidence 777888999999877667789999999994 3789999999999999999999999999 589999999
Q ss_pred c-----hhhhhhhhhcccccCc
Q 006541 535 S-----DLLLLQSDLYTADEGI 551 (641)
Q Consensus 535 ~-----dll~~~sd~y~~~~g~ 551 (641)
. .+..+|.|+-.++.-+
T Consensus 405 ~~~~~D~p~T~~~~~l~~h~~w 426 (477)
T KOG2388|consen 405 GKSSTDNPSTARIALLRLHIRW 426 (477)
T ss_pred CCCCCCChhHHHHHHHHhhhhe
Confidence 5 2566677765555433
No 13
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-55 Score=440.69 Aligned_cols=192 Identities=31% Similarity=0.554 Sum_probs=175.5
Q ss_pred chHhHHHHHHcCceeccccCCCCC--cCCeeeecCCeeEeeHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCChhHHHHHH
Q 006541 4 HSIIIQKLLSTNAHLGRRVAAHHF--KQYTYGFRNAMAIIDSDKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVL 81 (641)
Q Consensus 4 ~~i~i~~Ll~a~~HlGh~~~~~~m--~~yI~g~Rngi~IIdl~~T~~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v~ 81 (641)
+.+++++||+||+||||++++|+| ++|||+.|||+|||||.||+.+|+.|++|++.++.++|+||||||+.+++++|+
T Consensus 2 ~~vsm~~lLeAGvHfGhqtr~wnpkm~~fIf~~RngihIIDL~kT~~~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V~ 81 (252)
T COG0052 2 AVVSMKQLLEAGVHFGHQTRRWNPKMKPFIFGERNGIHIIDLQKTLERLREAYKFLRRIAANGGKILFVGTKKQAQEPVK 81 (252)
T ss_pred CcCCHHHHHHcCccccccccccCCcccccceeecCCcEEEEHHHHHHHHHHHHHHHHHHHcCCCEEEEEechHHHHHHHH
Confidence 348999999999999999999975 579999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcccCCcccccCccccCCcchhh----hhh-----------hccc-----------c--ccC----CCCCCC
Q 006541 82 QMTQKIGCYNPNMNALWRMGGFLTNSSSPKK----FRS-----------RNKK-----------I--RFG----PTKLPD 129 (641)
Q Consensus 82 ~~a~~~g~~~~~vn~rW~igG~LTN~~~~kk----~~~-----------~~kk-----------~--~~g----~~~~Pd 129 (641)
++|++||++|+ |+|| +|||||||+++++ +.+ +.|| + ++| |.++||
T Consensus 82 ~~A~r~g~~yV--~~Rw-LgG~LTN~~ti~~si~rl~~lE~~~~~~~~~~tKkE~l~l~re~~kL~k~lgGIk~m~~~Pd 158 (252)
T COG0052 82 EFAERTGAYYV--NGRW-LGGMLTNFKTIRKSIKRLKELEKMEEDGFDGLTKKEALMLTRELEKLEKSLGGIKDMKGLPD 158 (252)
T ss_pred HHHHHhCCcee--cCcc-cCccccCchhHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhcchhhccCCCC
Confidence 99999999987 9999 8999999998543 321 1121 1 455 578999
Q ss_pred eEEEeCCCcchhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCCC-hhhHHHHHHHHHHHHHHHHhhhhc
Q 006541 130 CVVVLDTERKSSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGND-SVQFVYLLCNMITKTFLVEQKKLG 201 (641)
Q Consensus 130 lvii~d~~~~~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~Nd-S~~si~~i~~ll~~ail~g~~~~~ 201 (641)
++||+||..+++||.||+++||||||+|||||||+ .||||||||| +++||.+++++|++||++|++...
T Consensus 159 ~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dpd---~VD~~IP~Ndda~rsi~Li~~~lA~ai~e~r~~~~ 228 (252)
T COG0052 159 VLFVIDPRKEKIAVKEANKLGIPVVALVDTNCDPD---GVDYVIPGNDDAIRSIALIYWLLARAILEGRGGAL 228 (252)
T ss_pred EEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCCCc---cCceeecCCChHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999997 8999999998 999999999999999999998654
No 14
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=100.00 E-value=5.7e-53 Score=433.22 Aligned_cols=201 Identities=30% Similarity=0.505 Sum_probs=180.4
Q ss_pred hHhHHHHHHcCceeccccCCCC--CcCCeeeecCCeeEeeHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCChhHHHHHHH
Q 006541 5 SIIIQKLLSTNAHLGRRVAAHH--FKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQ 82 (641)
Q Consensus 5 ~i~i~~Ll~a~~HlGh~~~~~~--m~~yI~g~Rngi~IIdl~~T~~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v~~ 82 (641)
.+++++||+||+|+||+++.|+ |+|||||.|+|+|||||++|+.+|++||++|+++++++|+||||||+++++++|++
T Consensus 3 ~~~i~~Ll~agvH~Gh~~~~wnp~m~~yIyg~r~gi~IIdL~kT~~~L~~A~~~i~~~~~~~g~iLfVgTk~~~~~~V~~ 82 (258)
T PRK05299 3 VVSMKQLLEAGVHFGHQTRRWNPKMKPYIFGERNGIHIIDLQKTVPMLDEAYNFVRDVAANGGKILFVGTKKQAQEAIAE 82 (258)
T ss_pred cCCHHHHHhcCcccccccCcCCCccccceecccCCeEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEECcHHHHHHHHH
Confidence 5789999999999999998885 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcccCCcccccCccccCCcchhhhhh----------------hcc-----------c--cccC----CCCCCC
Q 006541 83 MTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRS----------------RNK-----------K--IRFG----PTKLPD 129 (641)
Q Consensus 83 ~a~~~g~~~~~vn~rW~igG~LTN~~~~kk~~~----------------~~k-----------k--~~~g----~~~~Pd 129 (641)
+|+++|++|+ ++|| +||+||||.++++... ..| | .+|| |.++||
T Consensus 83 ~A~~~~~~yv--~~rW-lgG~LTN~~ti~~~i~~l~~l~~~~~~~~~~~~~kke~~~~~k~~~kl~k~~~Gi~~m~~~Pd 159 (258)
T PRK05299 83 EAERCGMPYV--NHRW-LGGMLTNFKTIRKSIKRLKELEKMEEDGTFEKLTKKEALMLTRELEKLEKSLGGIKDMGGLPD 159 (258)
T ss_pred HHHHhCCeee--CCee-cCeeccCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHhccCccccccCCC
Confidence 9999999987 9999 8999999988654221 111 1 1454 568999
Q ss_pred eEEEeCCCcchhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCCC-hhhHHHHHHHHHHHHHHHHhhhhcCCCCchh
Q 006541 130 CVVVLDTERKSSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGND-SVQFVYLLCNMITKTFLVEQKKLGLLKDDED 208 (641)
Q Consensus 130 lvii~d~~~~~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~Nd-S~~si~~i~~ll~~ail~g~~~~~~~~~~~~ 208 (641)
+|||+||..|++|++||.++||||||||||||||+ .||||||||| |.+||+|||++|++||++|++.+.....+.+
T Consensus 160 ~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~dp~---~IdypIP~Ndds~~si~li~~~l~~ai~~g~~~~~~~~~~~~ 236 (258)
T PRK05299 160 ALFVVDPNKEHIAVKEARKLGIPVVAIVDTNCDPD---GVDYPIPGNDDAIRSIKLYTSKIADAILEGRQGRLAEAAEEE 236 (258)
T ss_pred EEEEeCCCccHHHHHHHHHhCCCEEEEeeCCCCCc---ccceeeecCCchHHHHHHHHHHHHHHHHHHhhchhhccccch
Confidence 99999999999999999999999999999999996 8999999998 9999999999999999999998776664444
Q ss_pred HHh
Q 006541 209 QRE 211 (641)
Q Consensus 209 ~~~ 211 (641)
+.+
T Consensus 237 ~~~ 239 (258)
T PRK05299 237 EEE 239 (258)
T ss_pred hhh
Confidence 443
No 15
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=100.00 E-value=1.1e-52 Score=412.87 Aligned_cols=180 Identities=22% Similarity=0.361 Sum_probs=169.7
Q ss_pred chHhHHHHHHcCceeccccCCCCCcCCeeeec-CCeeEeeHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCChhHHHHHHH
Q 006541 4 HSIIIQKLLSTNAHLGRRVAAHHFKQYTYGFR-NAMAIIDSDKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQ 82 (641)
Q Consensus 4 ~~i~i~~Ll~a~~HlGh~~~~~~m~~yI~g~R-ngi~IIdl~~T~~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v~~ 82 (641)
..+++++||+||+|+||+.++++|+|||||+| +|+|||||++|+++|++|++++++++ +|+||||||+++++.+|++
T Consensus 2 ~~~~i~~ll~agvH~Gh~~~np~M~~yI~~~r~~gi~IIdL~kT~~~L~~A~~~i~~i~--~~~ILfVgtk~~~~~~V~~ 79 (196)
T TIGR01012 2 KLVPVDKYLAAGVHIGTQNKTKDMEKFIYKVRSDGLYVLDLRKTDERLRVAAKFLVRIE--PEDILVVSARIYGQKPVLK 79 (196)
T ss_pred ccccHHHHHhCCeecCCCcCCCCCccceeeecCCCCEEEcHHHHHHHHHHHHHHHHHhh--CCeEEEEecCHHHHHHHHH
Confidence 46789999999999999998889999999999 79999999999999999999999997 9999999999999999999
Q ss_pred HHHHhCCCcccCCcccccCccccCCcchhhhhhhccccccCCCCCCCeEEEeCCCcchhHHHHHhhcCCCEEEEeCCCCC
Q 006541 83 MTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMP 162 (641)
Q Consensus 83 ~a~~~g~~~~~vn~rW~igG~LTN~~~~kk~~~~~kk~~~g~~~~Pdlvii~d~~~~~~ai~EA~~l~IP~IalvDTn~~ 162 (641)
+|+++|++|+ ++|| +||+||||.+- . .++||+|||+||..|++||+||+++||||||+||||||
T Consensus 80 ~A~~~g~~~v--~~RW-lgGtLTN~~~~-~------------~~~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~d 143 (196)
T TIGR01012 80 FAKVTGARAI--AGRF-TPGTFTNPMQK-A------------FREPEVVVVTDPRADHQALKEASEVGIPIVALCDTDNP 143 (196)
T ss_pred HHHHhCCceE--CCee-CCCCCCCcccc-c------------cCCCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCCC
Confidence 9999999987 9999 89999999853 2 27999999999999999999999999999999999999
Q ss_pred CCCCCceEEeecCCC-hhhHHHHHHHHHHHHHHHHhhhhcCCC
Q 006541 163 LDVYSKITYPVPGND-SVQFVYLLCNMITKTFLVEQKKLGLLK 204 (641)
Q Consensus 163 ~~~~~~IdypIP~Nd-S~~si~~i~~ll~~ail~g~~~~~~~~ 204 (641)
|+ .||||||||| |.+||+++|++|+++|++||+...+..
T Consensus 144 p~---~vdypIP~Ndds~~Si~li~~lla~ail~~~g~~~~~~ 183 (196)
T TIGR01012 144 LR---YVDLVIPTNNKGRHSLALIYWLLAREILRMRGTISRDQ 183 (196)
T ss_pred Cc---cCCEEECCCCchHHHHHHHHHHHHHHHHHhhCccCCCC
Confidence 96 8999999998 999999999999999999998866533
No 16
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=100.00 E-value=4.3e-52 Score=410.98 Aligned_cols=178 Identities=21% Similarity=0.370 Sum_probs=167.8
Q ss_pred hHhHHHHHHcCceeccccCCCCCcCCeeeec-CCeeEeeHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCChhHHHHHHHH
Q 006541 5 SIIIQKLLSTNAHLGRRVAAHHFKQYTYGFR-NAMAIIDSDKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQM 83 (641)
Q Consensus 5 ~i~i~~Ll~a~~HlGh~~~~~~m~~yI~g~R-ngi~IIdl~~T~~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v~~~ 83 (641)
.+++++||+||+|+||+.++++|+|||||.| +|+|||||++|+++|++|+++|.++ ++|+||||||+++++++|+++
T Consensus 9 ~v~i~~ll~ag~H~Gh~~~np~Mk~yIyg~r~~gi~IIdL~kT~~~L~~A~~~i~~~--~~~~ILfVgTk~~~~~~v~k~ 86 (204)
T PRK04020 9 LVPLEEYLAAGVHIGTQQKTKDMERFIYRVRPDGLYVLDVRKTDERIRIAAKFLSRY--EPEKILVVSSRQYGQKPVQKF 86 (204)
T ss_pred eeeHHHHHhCCeEcCCCcCCCCCcccEeeecCCCCEEEcHHHHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHH
Confidence 3689999999999999999999999999999 6999999999999999999999997 799999999999999999999
Q ss_pred HHHhCCCcccCCcccccCccccCCcchhhhhhhccccccCCCCCCCeEEEeCCCcchhHHHHHhhcCCCEEEEeCCCCCC
Q 006541 84 TQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMPL 163 (641)
Q Consensus 84 a~~~g~~~~~vn~rW~igG~LTN~~~~kk~~~~~kk~~~g~~~~Pdlvii~d~~~~~~ai~EA~~l~IP~IalvDTn~~~ 163 (641)
|+++|++|+ ++|| +||+||||..-+ + .+||+||++||..|++||+||+++||||||||||||||
T Consensus 87 A~~~g~~~v--~~RW-lgG~LTN~~~~~-~------------~~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~dp 150 (204)
T PRK04020 87 AEVVGAKAI--TGRF-IPGTLTNPSLKG-Y------------IEPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDNLT 150 (204)
T ss_pred HHHhCCeee--cCcc-CCCcCcCcchhc-c------------CCCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCCCc
Confidence 999999987 9999 899999998532 2 59999999999999999999999999999999999999
Q ss_pred CCCCceEEeecCCC-hhhHHHHHHHHHHHHHHHHhhhhcCC
Q 006541 164 DVYSKITYPVPGND-SVQFVYLLCNMITKTFLVEQKKLGLL 203 (641)
Q Consensus 164 ~~~~~IdypIP~Nd-S~~si~~i~~ll~~ail~g~~~~~~~ 203 (641)
+ .||||||||| |++||++++++|+++|++||+..+..
T Consensus 151 ~---~VdypIP~Ndds~~SI~li~~ll~~aIl~~kg~~~~~ 188 (204)
T PRK04020 151 S---NVDLVIPTNNKGRKALALVYWLLAREILRERGEIKPD 188 (204)
T ss_pred c---cCceeECCCCchHHHHHHHHHHHHHHHHHhhCccCCC
Confidence 6 8999999998 99999999999999999999885543
No 17
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=100.00 E-value=2.1e-52 Score=439.23 Aligned_cols=187 Identities=30% Similarity=0.510 Sum_probs=170.8
Q ss_pred HHHHHHcCceeccccCCCC--CcCCeeeecCCeeEeeHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCChhHHHHHHHHHH
Q 006541 8 IQKLLSTNAHLGRRVAAHH--FKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQ 85 (641)
Q Consensus 8 i~~Ll~a~~HlGh~~~~~~--m~~yI~g~Rngi~IIdl~~T~~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v~~~a~ 85 (641)
+++||+||+||||++++|| |+|||||.|+|+|||||++|+.+|++||+||.++++++|+||||||+++++++|+++|+
T Consensus 1 ~~~Ll~agvH~Gh~~~~wnpkM~~yIyg~R~gihIIDL~kT~~~L~~A~~~i~~~~~~gg~iLfVgTk~~~~~~V~~~A~ 80 (326)
T PRK12311 1 MRQLLEAGVHFGHQSHRWNPKMAPYIFGTRNNIHIIDLAQTVPLLHRALQAVSDTVAKGGRVLFVGTKRQAQDAVADAAK 80 (326)
T ss_pred ChhHHhCCeecccCCCCCCCcccCceecccCCcEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHHH
Confidence 4789999999999999885 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcccCCcccccCccccCCcchhhhhh----------------hcc-----------cc--ccC----CCCCCCeEE
Q 006541 86 KIGCYNPNMNALWRMGGFLTNSSSPKKFRS----------------RNK-----------KI--RFG----PTKLPDCVV 132 (641)
Q Consensus 86 ~~g~~~~~vn~rW~igG~LTN~~~~kk~~~----------------~~k-----------k~--~~g----~~~~Pdlvi 132 (641)
++|++|+ |+|| +|||||||.++++... +.| |+ +|| |.++||+||
T Consensus 81 ~~g~~yV--~~RW-lgG~LTN~~ti~~si~~l~~l~~~~~~~~~~~~~kke~~~~~r~~~kl~k~l~Gi~~m~~~Pd~vi 157 (326)
T PRK12311 81 RSAQYFV--NSRW-LGGTLTNWKTISGSIQRLRKLDEVLSSGEANGYTKKERLTLQRERDKLDRALGGIKDMGGLPDLLF 157 (326)
T ss_pred HhCCeee--CCee-cCcccCCHHHHHHHHHHHHHHHHHhhcCccccCCHHHHHHHHHHHHHHHHhccchhhcccCCCEEE
Confidence 9999987 9999 8999999997654321 111 11 565 467999999
Q ss_pred EeCCCcchhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCCC-hhhHHHHHHHHHHHHHHHHhhhh
Q 006541 133 VLDTERKSSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGND-SVQFVYLLCNMITKTFLVEQKKL 200 (641)
Q Consensus 133 i~d~~~~~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~Nd-S~~si~~i~~ll~~ail~g~~~~ 200 (641)
|+||..+++||+||.++||||||||||||||+ .||||||||| |++||+|||++|+++|++|+...
T Consensus 158 v~d~~~e~~AI~EA~kl~IPvIaivDTn~dp~---~IdypIP~NDds~~si~li~~~la~ai~~g~~~~ 223 (326)
T PRK12311 158 VIDTNKEDIAIQEAQRLGIPVAAIVDTNCDPD---GITYPVPGNDDAGRAIALYCDLIARAAIDGISRA 223 (326)
T ss_pred EeCCccchHHHHHHHHcCCCEEEEeeCCCCcc---ccceeecCCCchHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999996 8999999998 99999999999999999999743
No 18
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=100.00 E-value=4.4e-52 Score=419.56 Aligned_cols=187 Identities=33% Similarity=0.596 Sum_probs=171.6
Q ss_pred HhHHHHHHcCceeccccCCCC--CcCCeeeecCCeeEeeHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCChhHHHHHHHH
Q 006541 6 IIIQKLLSTNAHLGRRVAAHH--FKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQM 83 (641)
Q Consensus 6 i~i~~Ll~a~~HlGh~~~~~~--m~~yI~g~Rngi~IIdl~~T~~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v~~~ 83 (641)
+++++|++||+|+||+++.|+ |+|||||+|+|+|||||++|+.+|++||++|+++++++|+||||||+++++++|+++
T Consensus 2 ~~~~~ll~ag~H~Gh~~~~wnp~m~~yIyg~r~g~~IIdL~~T~~~L~~A~~~i~~~~~~~g~iLfV~tk~~~~~~v~~~ 81 (225)
T TIGR01011 2 VSMKDLLEAGVHFGHQTRRWNPKMKPFIFGERNGIHIIDLQKTLQLLKEAYNFVKDVAANGGKILFVGTKKQAKEIIKEE 81 (225)
T ss_pred cCHHHHHHcCcccccccCcCCcccccceeeeeCCeEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHH
Confidence 678999999999999999885 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcccCCcccccCccccCCcchhhhhhh----------------cc-----------c--cccC----CCCCCCe
Q 006541 84 TQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSR----------------NK-----------K--IRFG----PTKLPDC 130 (641)
Q Consensus 84 a~~~g~~~~~vn~rW~igG~LTN~~~~kk~~~~----------------~k-----------k--~~~g----~~~~Pdl 130 (641)
|+++|++|+ ++|| +||+||||.++++...+ .| | .+|| |.++||+
T Consensus 82 a~~~~~~yv--~~rW-lgG~LTN~~~i~~~i~~l~~l~~~~~~~~f~~~~kke~~~~~k~~~kl~k~~~Gi~~m~~~Pd~ 158 (225)
T TIGR01011 82 AERCGMFYV--NQRW-LGGMLTNFKTIRKSIKKLKKLEKMEEDGTFDDLTKKEALMLSREKEKLEKSLGGIKDMKKLPDL 158 (225)
T ss_pred HHHhCCccc--CCee-cCeeccCHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHhccCccccccCCCE
Confidence 999999987 9999 89999999886432211 11 1 1454 5689999
Q ss_pred EEEeCCCcchhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCCC-hhhHHHHHHHHHHHHHHHHhh
Q 006541 131 VVVLDTERKSSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGND-SVQFVYLLCNMITKTFLVEQK 198 (641)
Q Consensus 131 vii~d~~~~~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~Nd-S~~si~~i~~ll~~ail~g~~ 198 (641)
||++||.+|++|++||.++||||||+|||||||+ .||||||||| |.+||+|++++|++||++|++
T Consensus 159 vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~~p~---~idypIP~Ndds~~si~li~~~l~~ai~~g~~ 224 (225)
T TIGR01011 159 LFVIDPVKEKIAVAEARKLGIPVVAIVDTNCDPD---LVDYPIPGNDDAIRSIRLLTNLIADAVLEGKQ 224 (225)
T ss_pred EEEeCCCccHHHHHHHHHcCCCEEEEeeCCCCCc---ccceeeecCCchHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999996 8999999998 999999999999999999974
No 19
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=100.00 E-value=6.8e-51 Score=411.24 Aligned_cols=183 Identities=25% Similarity=0.376 Sum_probs=171.8
Q ss_pred CcchHhHHHHHHcCceeccccCCCCCcCCeeee-cCCeeEeeHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCChhHHHHH
Q 006541 2 TLHSIIIQKLLSTNAHLGRRVAAHHFKQYTYGF-RNAMAIIDSDKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIV 80 (641)
Q Consensus 2 ~~~~i~i~~Ll~a~~HlGh~~~~~~m~~yI~g~-Rngi~IIdl~~T~~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v 80 (641)
+.++.++++||+||+||||+..+++|++||||+ |+|+|||||++|+++|++|+++|..+ .++++||||||+++++++|
T Consensus 9 ~~~~~~i~~lL~agvHlG~~~~np~M~~YIy~~r~dGi~IIdL~kT~~~L~~Aa~~i~~i-~~~~~Il~Vstr~~~~~~V 87 (249)
T PTZ00254 9 TPKEDDIKKMLACKCHIGTKNLENAMKKYVYKRTKEGVHIINLAKTWEKLKLAARVIAAI-ENPADVVVVSSRPYGQRAV 87 (249)
T ss_pred CCCHHHHHHHHhcCceeccCcCCCcccccEecccCCCCEEEcHHHHHHHHHHHHHHHHHH-hCCCcEEEEEcCHHHHHHH
Confidence 467889999999999999998888999999997 59999999999999999999999998 6799999999999999999
Q ss_pred HHHHHHhCCCcccCCcccccCccccCCcchhhhhhhccccccCCCCCCCeEEEeCCCcchhHHHHHhhcCCCEEEEeCCC
Q 006541 81 LQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSS 160 (641)
Q Consensus 81 ~~~a~~~g~~~~~vn~rW~igG~LTN~~~~kk~~~~~kk~~~g~~~~Pdlvii~d~~~~~~ai~EA~~l~IP~IalvDTn 160 (641)
+++|+++|++|+ ++|| +||+||||.+. +| ++||+|||+||..|++||+||+++|||||||||||
T Consensus 88 ~k~A~~tg~~~i--~~Rw-~pGtlTN~~~~-~f------------~~P~llIV~Dp~~d~qAI~EA~~lnIPvIal~DTd 151 (249)
T PTZ00254 88 LKFAQYTGASAI--AGRF-TPGTFTNQIQK-KF------------MEPRLLIVTDPRTDHQAIREASYVNIPVIALCDTD 151 (249)
T ss_pred HHHHHHhCCeEE--CCcc-cCCCCCCcccc-cc------------CCCCEEEEeCCCcchHHHHHHHHhCCCEEEEecCC
Confidence 999999999987 9999 89999999763 32 79999999999999999999999999999999999
Q ss_pred CCCCCCCceEEeecCCC-hhhHHHHHHHHHHHHHHHHhhhhcCCC
Q 006541 161 MPLDVYSKITYPVPGND-SVQFVYLLCNMITKTFLVEQKKLGLLK 204 (641)
Q Consensus 161 ~~~~~~~~IdypIP~Nd-S~~si~~i~~ll~~ail~g~~~~~~~~ 204 (641)
|||+ +||||||||| |.+||++++++|+++|+++|+...+..
T Consensus 152 s~p~---~VDy~IP~Ndds~~SI~li~~lLar~Vl~~rG~~~r~~ 193 (249)
T PTZ00254 152 SPLE---YVDIAIPCNNRGKESIALMYWLLAREVLRLRGTLPRDE 193 (249)
T ss_pred CCcc---cCceeeCCCCchHHHHHHHHHHHHHHHHHhhCccccCC
Confidence 9996 8999999998 999999999999999999999866644
No 20
>CHL00067 rps2 ribosomal protein S2
Probab=100.00 E-value=4.6e-51 Score=413.37 Aligned_cols=189 Identities=28% Similarity=0.495 Sum_probs=172.9
Q ss_pred cchHhHHHHHHcCceeccccCCC--CCcCCeeeecCCeeEeeHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCChhHHHHH
Q 006541 3 LHSIIIQKLLSTNAHLGRRVAAH--HFKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIV 80 (641)
Q Consensus 3 ~~~i~i~~Ll~a~~HlGh~~~~~--~m~~yI~g~Rngi~IIdl~~T~~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v 80 (641)
+..+++++|++||+|+||+++.| +|++||||.|+|+|||||++|+.+|++|+++|+++++++|+||||||+++++++|
T Consensus 5 ~~~~~i~~Ll~a~~h~Gh~~~~~np~m~~yIyg~r~g~~IIdl~~T~~~L~~A~~~i~~i~~~~g~ILfV~t~~~~~~~v 84 (230)
T CHL00067 5 MWNINLEEMLEAGVHFGHQTRKWNPKMAPYIYAERNGIHIINLVQTARFLSEACDLVFDAASKGKKFLFVGTKKQAADLV 84 (230)
T ss_pred ccccCHHHHHhcCeEeccCcCcCCCchhhhhhcccCCcEEEcHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHH
Confidence 45689999999999999998887 4899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcccCCcccccCccccCCcchhhhhhh----------------ccc-------------cccC----CCCC
Q 006541 81 LQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSR----------------NKK-------------IRFG----PTKL 127 (641)
Q Consensus 81 ~~~a~~~g~~~~~vn~rW~igG~LTN~~~~kk~~~~----------------~kk-------------~~~g----~~~~ 127 (641)
+++|+++|++|+ ++|| +||+||||.+++++..+ .|| .+|| +.++
T Consensus 85 ~~~a~~~~~~yv--~~rW-igG~LTN~~~i~~~i~~~~~l~~~~~~~~~~~~~kk~~~~~~~~~~kl~k~~~Gi~~m~~~ 161 (230)
T CHL00067 85 ASAAIRARCHYV--NKRW-LGGMLTNWSTTKTRLQKLRDLRMEEKTGLFNRLPKKEAAILKRQLSRLEKYLGGIKYMTKL 161 (230)
T ss_pred HHHHHHhCCcCc--cCcc-cCCcccCHHHHHHHHHHHHHHHHHhhccchhcccHhHHHHHHHHHHHHHHhhccccccccC
Confidence 999999999987 9999 89999999986543211 111 1454 5789
Q ss_pred CCeEEEeCCCcchhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCCC-hhhHHHHHHHHHHHHHHHHh
Q 006541 128 PDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGND-SVQFVYLLCNMITKTFLVEQ 197 (641)
Q Consensus 128 Pdlvii~d~~~~~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~Nd-S~~si~~i~~ll~~ail~g~ 197 (641)
||+|||+||..|++|++||.++|||||||||||+||+ .||||||||| |.+||+|++++|++||++|+
T Consensus 162 P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~p~---~idypIP~Ndds~~si~li~~~l~~ai~~G~ 229 (230)
T CHL00067 162 PDIVIIIDQQEEYTALRECRKLGIPTISILDTNCDPD---LADIPIPANDDAIASIKLILNKLTTAICEGR 229 (230)
T ss_pred CCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCCcc---ccceeeecCCchHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999996 8999999998 99999999999999999996
No 21
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-49 Score=387.08 Aligned_cols=193 Identities=36% Similarity=0.585 Sum_probs=180.3
Q ss_pred CcchHhHHHHHHcCceeccccCCC--CCcCCeeeecCCeeEeeHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCChhHHHH
Q 006541 2 TLHSIIIQKLLSTNAHLGRRVAAH--HFKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEI 79 (641)
Q Consensus 2 ~~~~i~i~~Ll~a~~HlGh~~~~~--~m~~yI~g~Rngi~IIdl~~T~~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~ 79 (641)
+.+.+++++|+.||+|+||++..| +|+|||||+|+|+|||||+||..+|++|++|+.++|..+|.||||||++.++..
T Consensus 44 ~~~~~~v~~L~~agvHlGh~t~~wn~~m~pyiyG~R~Gi~IIdLdqT~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ 123 (251)
T KOG0832|consen 44 VPELISVEELFNAGVHLGHKTGKWNPRMKPYIYGKRLGIHIIDLDQTASYLRRALNFVAHVAHRGGIILFVGTNNGFKDL 123 (251)
T ss_pred chhhccHHHHHhccccccccccccCcccchhhcccccCcEEEecHHHHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHH
Confidence 357789999999999999999988 599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcccCCcccccCccccCCcchh-----hhhhhccccccCCCCCCCeEEEeCCCcchhHHHHHhhcCCCEE
Q 006541 80 VLQMTQKIGCYNPNMNALWRMGGFLTNSSSPK-----KFRSRNKKIRFGPTKLPDCVVVLDTERKSSVIMEAAKLQVPIV 154 (641)
Q Consensus 80 v~~~a~~~g~~~~~vn~rW~igG~LTN~~~~k-----k~~~~~kk~~~g~~~~Pdlvii~d~~~~~~ai~EA~~l~IP~I 154 (641)
|+++|+++|+|++ +.+| .||+||||.... ++..+-++.+|+.+.-||+|||+|+.+++.|+.||.|++||||
T Consensus 124 ve~aA~r~~gy~~--~~~w-~~G~lTN~~~l~g~~~~~~~~~pd~~~f~~t~~~D~vvvln~~e~~sAilEA~K~~IPTI 200 (251)
T KOG0832|consen 124 VERAARRAGGYSH--NRKW-LGGLLTNARELFGALVRKFLSLPDALCFLPTLTPDLVVVLNPEENHSAILEAAKMAIPTI 200 (251)
T ss_pred HHHHHHHhcCcee--eeee-ccceeecchhhcccccccccCCCcceeecccCCcceeEecCcccccHHHHHHHHhCCCeE
Confidence 9999999999987 8999 799999998642 3334445668898899999999999999999999999999999
Q ss_pred EEeCCCCCCCCCCceEEeecCCC-hhhHHHHHHHHHHHHHHHHhhhh
Q 006541 155 ALVDSSMPLDVYSKITYPVPGND-SVQFVYLLCNMITKTFLVEQKKL 200 (641)
Q Consensus 155 alvDTn~~~~~~~~IdypIP~Nd-S~~si~~i~~ll~~ail~g~~~~ 200 (641)
|||||||+|+ .|+||||||| |.+++.|+|+++..||.+|+..+
T Consensus 201 gIVDtN~~P~---liTYpVPaNDDs~~sv~f~~~l~k~ai~~g~~~r 244 (251)
T KOG0832|consen 201 GIVDTNCNPE---LITYPVPANDDSPASVEFILNLLKRAIARGKQKR 244 (251)
T ss_pred EEecCCCCcc---ceeeccCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 8999999998 99999999999999999999876
No 22
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=100.00 E-value=1.6e-48 Score=385.87 Aligned_cols=179 Identities=37% Similarity=0.629 Sum_probs=164.9
Q ss_pred HHHcCceeccccCCC--CCcCCeeeecCCeeEeeHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCChhHHHHHHHHHHHhC
Q 006541 11 LLSTNAHLGRRVAAH--HFKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIG 88 (641)
Q Consensus 11 Ll~a~~HlGh~~~~~--~m~~yI~g~Rngi~IIdl~~T~~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v~~~a~~~g 88 (641)
|++||+|+||+...| +|+|||||.|+|+|||||++|+.+|++|+++++++++++|+||||||+++++++|+++|+++|
T Consensus 1 ll~ag~h~G~~~~~wnp~m~~yiyg~r~~~~Iidl~~T~~~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~~ 80 (193)
T cd01425 1 LLEAGVHLGHKTRRWNPKMKPYIYGERNGIHIIDLEKTLEKLRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERTG 80 (193)
T ss_pred CCccceEeCCCcCCCCccchhheecccCCeEEEeHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 689999999999977 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCcccccCccccCCcchhhhhhhcccc-------ccC----CCCCCCeEEEeCCCcchhHHHHHhhcCCCEEEEe
Q 006541 89 CYNPNMNALWRMGGFLTNSSSPKKFRSRNKKI-------RFG----PTKLPDCVVVLDTERKSSVIMEAAKLQVPIVALV 157 (641)
Q Consensus 89 ~~~~~vn~rW~igG~LTN~~~~kk~~~~~kk~-------~~g----~~~~Pdlvii~d~~~~~~ai~EA~~l~IP~Ialv 157 (641)
++|+ ++|| +||+||||.+++++..+.+++ +++ +.++||+||++||..|++|++||.++||||||+|
T Consensus 81 ~~~i--~~rw-~~G~LTN~~~~~~~~~~~~~~~~~~~~k~~~g~~~~~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~ 157 (193)
T cd01425 81 SFYV--NGRW-LGGTLTNWKTIRKSIKRLKKLEKEKLEKNLGGIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIV 157 (193)
T ss_pred Ceee--cCee-cCCcCCCHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCEEEEeCCccchHHHHHHHHcCCCEEEEe
Confidence 9987 9999 899999999887655443221 232 5789999999999999999999999999999999
Q ss_pred CCCCCCCCCCceEEeecCCC-hhhHHHHHHHHHHHHHHH
Q 006541 158 DSSMPLDVYSKITYPVPGND-SVQFVYLLCNMITKTFLV 195 (641)
Q Consensus 158 DTn~~~~~~~~IdypIP~Nd-S~~si~~i~~ll~~ail~ 195 (641)
|||+||+ .||||||||| |.+|+++++++|++|+++
T Consensus 158 Dtn~~~~---~i~ypIP~Nd~s~~si~li~~~l~~ai~~ 193 (193)
T cd01425 158 DTNCDPD---LIDYPIPANDDSIRSIALILWLLARAILE 193 (193)
T ss_pred cCCCCCc---cceEEeecCCchHHHHHHHHHHHHHHHhC
Confidence 9999996 8999999998 999999999999999863
No 23
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=100.00 E-value=1.2e-47 Score=384.45 Aligned_cols=181 Identities=39% Similarity=0.670 Sum_probs=161.4
Q ss_pred HHHcCceeccccCCC--CCcCCeeeecCCeeEeeHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCChhHHHHHHHHHHHhC
Q 006541 11 LLSTNAHLGRRVAAH--HFKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIG 88 (641)
Q Consensus 11 Ll~a~~HlGh~~~~~--~m~~yI~g~Rngi~IIdl~~T~~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v~~~a~~~g 88 (641)
|++||+|+||+++.| +|+|||||.|+|+|||||++|+.+|++|+++|.++++++|+||||||+++.+++|+++|+++|
T Consensus 1 Ll~a~~HlG~~~~~~n~~m~~yI~g~r~g~~IidL~kT~~~L~~A~~~i~~i~~~~~~ILfV~t~~~~~~~v~~~a~~~~ 80 (211)
T PF00318_consen 1 LLKAGVHLGHKKSRWNPKMKPYIYGKRNGIHIIDLEKTLEQLRKALKFIKSIAKNGGKILFVGTKPQASKIVKKFAKRTG 80 (211)
T ss_dssp HHHHTTTSCBSSSSSSGGGGGGEEEEETTEEEETHHHHHHHHHHHHHHHHHHHTTTGGEEEEECSTTHHHHHHHHHHHHT
T ss_pred CcccceecCCCcCCCCCCcccceecccCceEEEEHHHHHHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHhC
Confidence 799999999998777 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCcccccCccccCCcchhhhhhh---------------------cccc--ccC----CCCCCCeEEEeCCCcchh
Q 006541 89 CYNPNMNALWRMGGFLTNSSSPKKFRSR---------------------NKKI--RFG----PTKLPDCVVVLDTERKSS 141 (641)
Q Consensus 89 ~~~~~vn~rW~igG~LTN~~~~kk~~~~---------------------~kk~--~~g----~~~~Pdlvii~d~~~~~~ 141 (641)
++|+ ++|| +||+||||.++++...+ .+|+ +|+ +.++||+||++||.+|.+
T Consensus 81 ~~yi--~~rW-i~G~LTN~~~i~~~i~~l~~l~~~~~~~kk~~~~~~~~~~kl~k~~~Gi~~l~~~P~~vii~~~~~~~~ 157 (211)
T PF00318_consen 81 SFYI--NERW-IGGTLTNWKTIKKSIKKLKKLEKLFKLTKKENAKLKKKYQKLKKYFGGIKNLKKLPDLVIILDPNKNKN 157 (211)
T ss_dssp CEEE--ESS--STTTTTTTTHCHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHCTTTTTCSSSBSEEEESSTTTTHH
T ss_pred CCcc--Ccee-cCcccCcHHHHHHHHHHHHHHHHhhhccchhhhhhHHHHHHhhhhhHhhhcccccCcEEEEecccccch
Confidence 9987 8999 89999999976532111 1111 343 578999999999999999
Q ss_pred HHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCCC-hhhHHHHHHHHHHHHHHHHh
Q 006541 142 VIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGND-SVQFVYLLCNMITKTFLVEQ 197 (641)
Q Consensus 142 ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~Nd-S~~si~~i~~ll~~ail~g~ 197 (641)
|++||.++||||||||||||||+ .||||||||| |..|+++++++|++||++||
T Consensus 158 ~i~Ea~~l~IP~i~i~Dtn~~~~---~i~ypIp~N~~s~~si~~i~~~l~~ai~~g~ 211 (211)
T PF00318_consen 158 AIREANKLNIPTIAIVDTNCNPS---LIDYPIPANDDSIKSIYLILNLLAKAILEGK 211 (211)
T ss_dssp HHHHHHHTTS-EEEEESTTS-GT---TSSEEEES-SSSHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHhcCceEEEeecCCCCcc---ccceEeecCCccHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999996 8999999998 99999999999999999986
No 24
>KOG0830 consensus 40S ribosomal protein SA (P40)/Laminin receptor 1 [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.3e-27 Score=234.29 Aligned_cols=159 Identities=21% Similarity=0.309 Sum_probs=150.3
Q ss_pred CCCCcCCeeeec-CCeeEeeHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCChhHHHHHHHHHHHhCCCcccCCcccccCc
Q 006541 24 AHHFKQYTYGFR-NAMAIIDSDKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGG 102 (641)
Q Consensus 24 ~~~m~~yI~g~R-ngi~IIdl~~T~~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v~~~a~~~g~~~~~vn~rW~igG 102 (641)
+..|.+|+|+.| +|+|||||.+||+.|..|++.|..| ++++.+-.+++++..+++|.+||..+|...| .+|+ .||
T Consensus 2 ~~~~~~y~~~~~~d~~~i~~~~~twekl~~aar~i~ai-enp~dv~v~ssr~~gqravlkfa~~tgatpi--ag~f-tpg 77 (254)
T KOG0830|consen 2 NFQMEQYIYKRRSDGIYIINLGRTWEKLLLAARAIVAI-ENPADVSVISSRNTGQRAVLKFAAATGATPI--AGRF-TPG 77 (254)
T ss_pred CcccccccccccCCceEEeeccccHHHHHHHHHHHhhc-cCccceEEEccCCcchhHHHHHHHhhCCCcc--cccc-ccc
Confidence 356899999998 6999999999999999999999998 8999999999999999999999999999998 8999 999
Q ss_pred cccCCcchhhhhhhccccccCCCCCCCeEEEeCCCcchhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCCC-hhhH
Q 006541 103 FLTNSSSPKKFRSRNKKIRFGPTKLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGND-SVQF 181 (641)
Q Consensus 103 ~LTN~~~~kk~~~~~kk~~~g~~~~Pdlvii~d~~~~~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~Nd-S~~s 181 (641)
+|||..+-. | +.|.++||+||+.|+++|+|++..|+|||+|||||++.. +||+.||||| +.+|
T Consensus 78 ~ftn~iq~~-f------------~epr~lvvtdpr~d~q~~~E~s~~n~p~ialcnTDSpL~---~VDIAIPcNNKG~hS 141 (254)
T KOG0830|consen 78 TFTNQIQAA-F------------REPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLC---YVDIAIPCNNKGAHS 141 (254)
T ss_pred ccchHHHHh-h------------cCCceeeecCcccccchhhhhhhcCCceEEEecCCCccc---eeeeeeecCCCCccc
Confidence 999987532 2 799999999999999999999999999999999999996 8999999999 9999
Q ss_pred HHHHHHHHHHHHHHHhhhhcC
Q 006541 182 VYLLCNMITKTFLVEQKKLGL 202 (641)
Q Consensus 182 i~~i~~ll~~ail~g~~~~~~ 202 (641)
|.+++++|++.+++.|+...+
T Consensus 142 Vgl~ww~LareVLrmrgtis~ 162 (254)
T KOG0830|consen 142 VGVMWWMLAREVLRMRGTISR 162 (254)
T ss_pred chhhhhhhhHHHHHHHhhhhh
Confidence 999999999999999999887
No 25
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=98.70 E-value=1.4e-06 Score=94.47 Aligned_cols=294 Identities=17% Similarity=0.179 Sum_probs=190.3
Q ss_pred cEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEE
Q 006541 262 KLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIH 341 (641)
Q Consensus 262 k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~ 341 (641)
.+.+|.||-|+||||-.+.||.+-++. |++.++..++.+..|... ++-+++ ..-.+..++.+.+.. ++.
T Consensus 2 ~~~~vILAAGkGTRMkS~lPKVLH~va-GkpMl~hVi~~a~~l~~~---~i~vVv---Gh~ae~V~~~~~~~~----~v~ 70 (460)
T COG1207 2 SLSAVILAAGKGTRMKSDLPKVLHPVA-GKPMLEHVIDAARALGPD---DIVVVV---GHGAEQVREALAERD----DVE 70 (460)
T ss_pred CceEEEEecCCCccccCCCcccchhcc-CccHHHHHHHHHhhcCcc---eEEEEE---cCCHHHHHHHhcccc----Cce
Confidence 467899999999999999999999994 999999998888876532 121221 223366666666543 577
Q ss_pred EEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCce-EEEEEcCcc-cccccCH-HHHHHHhhcCC
Q 006541 342 SLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKE-YALVVDSDN-VAAVADP-KIFNHLIQNQI 418 (641)
Q Consensus 342 ~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~e-yi~v~nvDN-L~~~~Dp-~~lg~~~~~~~ 418 (641)
++.|.. |-|-|-.+..| ...++++++ .+.|.+-|= |-..--. .++.++...+.
T Consensus 71 ~v~Q~e-----------------qlGTgHAV~~a-------~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~ 126 (460)
T COG1207 71 FVLQEE-----------------QLGTGHAVLQA-------LPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGA 126 (460)
T ss_pred EEEecc-----------------cCChHHHHHhh-------hhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCC
Confidence 888854 34555012222 344555666 777778887 6543222 47888887788
Q ss_pred ceEEEEeccCCCCCcceEEEeeCCe-EEEEEecCCCccccCCCCceeeeeceeeeHHHHHHHhhcCCCccceeecccccC
Q 006541 419 EYCMEVAPVPSIDLRNSLINLRPGK-FQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVN 497 (641)
Q Consensus 419 ~~~~evv~k~~~d~kgG~l~~~~g~-~~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~ 497 (641)
....-++.-..|.-=|-+++..+|+ .++||--+.+++..+ .+-.|++-.+|+-++|.+.|.+-
T Consensus 127 ~~tvLt~~~~dP~GYGRIvr~~~g~V~~IVE~KDA~~eek~--I~eiNtGiy~f~~~~L~~~L~~l-------------- 190 (460)
T COG1207 127 AATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEKQ--IKEINTGIYAFDGAALLRALPKL-------------- 190 (460)
T ss_pred ceEEEEEEcCCCCCcceEEEcCCCcEEEEEEcCCCCHHHhc--CcEEeeeEEEEcHHHHHHHHHHh--------------
Confidence 8888877777775544444444666 679998888777653 44579999999999999887531
Q ss_pred CCCchhhhHhhhhHhhcCC----CceEEEEe-ccccccccCCchhhhh------hhhhcccccCceeeCCCCCCCCCCeE
Q 006541 498 DDQIISRGTAADSAIQFFD----HTIGINVA-QSRYLPVNSTSDLLLL------QSDLYTADEGILVQNPARDNPANPSI 566 (641)
Q Consensus 498 ~~~~~qlE~~i~d~i~~f~----~~~~i~V~-R~rF~PvKn~~dll~~------~sd~y~~~~g~l~~~~~r~~~~~P~i 566 (641)
+.+-.|=|--+-|++..+. ...++.++ -++++=|.+--.|-.+ |-.-+.+..|.-...|++.
T Consensus 191 ~nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~------- 263 (460)
T COG1207 191 SNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATT------- 263 (460)
T ss_pred ccccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeE-------
Confidence 1234566777888888884 45566665 3678888777655433 3333444445444455532
Q ss_pred EeCCCcccHHhHhhhcCCCCCCCCcceEEEecceEEccCcEEEEEEEEEcCCCCeEecCCCCeeecceeeccC
Q 006541 567 ELGPEFEKVNNFQSRFKSIPSIINLDSLKVEGDVWFGAGITLKGKVSIVAKRGMKLEIPDGIVLENKEIKDVA 639 (641)
Q Consensus 567 ~L~~~f~~~~~~~~rf~~~p~i~~~~~L~V~Gdv~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l~n~~~~~~~ 639 (641)
.+ ...+++..||..-.||.|+|.++| |..++|-+|++|+|..|-.++
T Consensus 264 ~i----------------------~~dv~ig~DvvI~p~v~l~G~t~i----g~~v~iGpg~~i~ds~I~~~a 310 (460)
T COG1207 264 YI----------------------RGDVEIGRDVVIEPNVILEGNTVI----GDNVVIGPGSVIKDSVIGDNA 310 (460)
T ss_pred EE----------------------cCcEEECCceEEecCcEEeeeEEE----CCceEECCCcEEEeeEEcCCC
Confidence 11 123444455555556666666666 334667778888887776554
No 26
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.66 E-value=6.8e-06 Score=90.61 Aligned_cols=224 Identities=13% Similarity=0.164 Sum_probs=136.2
Q ss_pred EEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEEE
Q 006541 263 LVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHS 342 (641)
Q Consensus 263 ~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~~ 342 (641)
+.+|.||||.||||+...||.++|+. |+++++..++++... . -..+|+++.. .+...++++++. .+ +.+
T Consensus 3 ~~aiIlAaG~GtRl~~~~pK~Llpi~-gkPli~~~i~~l~~~----~--~~i~Ivv~~~-~~~i~~~~~~~~-~~--v~~ 71 (430)
T PRK14359 3 LSIIILAAGKGTRMKSSLPKVLHTIC-GKPMLFYILKEAFAI----S--DDVHVVLHHQ-KERIKEAVLEYF-PG--VIF 71 (430)
T ss_pred ccEEEEcCCCCccCCCCCCceeCEEC-CccHHHHHHHHHHHc----C--CcEEEEECCC-HHHHHHHHHhcC-Cc--eEE
Confidence 56799999999999999999999994 799999988888753 1 2466667654 567777877541 12 333
Q ss_pred EecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcc-cccccCHHHHHHHhhcCCceE
Q 006541 343 LSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVADPKIFNHLIQNQIEYC 421 (641)
Q Consensus 343 f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~Dp~~lg~~~~~~~~~~ 421 (641)
..|. .+.+.|.| +....+ +..-+++++.+.|+ + .++..+..+.+.+.+..
T Consensus 72 ~~~~---------------~~~~~gt~-~al~~~----------~~~~d~vlv~~gD~p~---~~~~~l~~l~~~~~~~~ 122 (430)
T PRK14359 72 HTQD---------------LENYPGTG-GALMGI----------EPKHERVLILNGDMPL---VEKDELEKLLENDADIV 122 (430)
T ss_pred EEec---------------CccCCCcH-HHHhhc----------ccCCCeEEEEECCccC---CCHHHHHHHHhCCCCEE
Confidence 3332 12344666 433221 11257899999999 5 36777777877777766
Q ss_pred EEEeccCCCCCcceEEEeeCCeE-EEEEecCCCccccCCCCceeeeeceeeeHHHHHHHhhcCCCccceeecccccCCCC
Q 006541 422 MEVAPVPSIDLRNSLINLRPGKF-QLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDDQ 500 (641)
Q Consensus 422 ~evv~k~~~d~kgG~l~~~~g~~-~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~~~~ 500 (641)
+-+++...+.. -|.+...+|+. .++|....+.++. .....|++-.+++-+.++++++.....
T Consensus 123 v~~~~~~~~~~-~g~v~~d~g~v~~i~e~~~~~~~~~--~~~~~~~Giyif~~~~l~~~~~~~~~~-------------- 185 (430)
T PRK14359 123 MSVFHLADPKG-YGRVVIENGQVKKIVEQKDANEEEL--KIKSVNAGVYLFDRKLLEEYLPLLKNQ-------------- 185 (430)
T ss_pred EEEEEcCCCcc-CcEEEEcCCeEEEEEECCCCCcccc--cceEEEeEEEEEEHHHHHHHHHhcCcc--------------
Confidence 66655444433 46655556653 3455433322221 122458887788888887765421100
Q ss_pred chhhhHhhhhHhhcC----CCceEEEEeccccccccCCchhhhhhhh
Q 006541 501 IISRGTAADSAIQFF----DHTIGINVAQSRYLPVNSTSDLLLLQSD 543 (641)
Q Consensus 501 ~~qlE~~i~d~i~~f----~~~~~i~V~R~rF~PvKn~~dll~~~sd 543 (641)
..+-|..+-|+++.+ .+..+++++...|.=|.+.+|+..++..
T Consensus 186 ~~~~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~ 232 (430)
T PRK14359 186 NAQKEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEI 232 (430)
T ss_pred cccCceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHH
Confidence 001122223444332 2345566665678888888998877543
No 27
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.63 E-value=6.2e-06 Score=89.69 Aligned_cols=251 Identities=12% Similarity=0.174 Sum_probs=145.5
Q ss_pred CcEEEEEEcCCCCCCCCC---CCCCeeeecCCCC-ChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCC
Q 006541 261 DKLVVVKFNGALGTNMGF---SGPKSAIEVKNNL-TPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNS 336 (641)
Q Consensus 261 ~k~avv~LaGGlGTrlG~---~~pK~~l~v~~~~-tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~f 336 (641)
+++-+|.||||.||||.- +.||.++|+. |+ +++|..++++.. .|+. -++|.+.. ..+...++|.....+
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~llpv~-gk~pli~~~l~~l~~----~Gi~-~i~iv~~~-~~~~i~~~~~~~~~~ 74 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPFG-GKYRIIDFTLSNCAN----SGID-TVGVLTQY-QPLELNNHIGIGSPW 74 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccceeeeC-CceeehhHHHHHHHh----CCCC-EEEEEecC-CHHHHHHHHhCCCcc
Confidence 467889999999999986 7899999996 55 899998888765 3544 45667765 467888898776666
Q ss_pred CceEEEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccCHHHHHHHhhc
Q 006541 337 KVDIHSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADPKIFNHLIQN 416 (641)
Q Consensus 337 g~~v~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~ 416 (641)
+++.. ++.+..+.+..... ..-.|-|.|..++.++. .+....-+++.|.+.|++...---.++-.+.++
T Consensus 75 ~~~~~---~~~~~i~~~~~~~~--~~~~~~Gta~al~~a~~------~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~ 143 (380)
T PRK05293 75 DLDRI---NGGVTILPPYSESE--GGKWYKGTAHAIYQNID------YIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEK 143 (380)
T ss_pred cccCC---CCCEEEeCCcccCC--CCcccCCcHHHHHHHHH------HHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhc
Confidence 65421 11110000010000 00123466523555543 222223478999999995432113456667777
Q ss_pred CCceEEEEecc-CCCCCcceEEEee-CCeEEEEEecCCCccccCCCCceeeeeceeeeHHHHHHHhhcCCCccceeeccc
Q 006541 417 QIEYCMEVAPV-PSIDLRNSLINLR-PGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSK 494 (641)
Q Consensus 417 ~~~~~~evv~k-~~~d~kgG~l~~~-~g~~~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K 494 (641)
+++..+-+..- .....+-|++... +|+ +.++.+-|... .-...|++-..++-+.+.+++++...
T Consensus 144 ~~~~tl~~~~~~~~~~~~yG~v~~d~~g~--V~~~~eKp~~~---~~~~~~~Giyi~~~~~l~~~l~~~~~--------- 209 (380)
T PRK05293 144 EADVTIAVIEVPWEEASRFGIMNTDENMR--IVEFEEKPKNP---KSNLASMGIYIFNWKRLKEYLIEDEK--------- 209 (380)
T ss_pred CCCEEEEEEEcchhhccccCEEEECCCCc--EEEEEeCCCCC---CcceeeeEEEEEcHHHHHHHHHHHhh---------
Confidence 77754433221 1123456777654 444 44555444321 12245888888888877776542110
Q ss_pred ccCCCCchhhhHhhhhHhhcC-CC---ceEEEEeccccccccCCchhhhhhhhhccccc
Q 006541 495 EVNDDQIISRGTAADSAIQFF-DH---TIGINVAQSRYLPVNSTSDLLLLQSDLYTADE 549 (641)
Q Consensus 495 ~v~~~~~~qlE~~i~d~i~~f-~~---~~~i~V~R~rF~PvKn~~dll~~~sd~y~~~~ 549 (641)
...+.+.+..|+++.+ ++ ..++.++ ..|..+-+.+|++.++.++.....
T Consensus 210 -----~~~~~~~~~~d~i~~l~~~~~~v~~~~~~-g~w~digt~~~~~~a~~~~l~~~~ 262 (380)
T PRK05293 210 -----NPNSSHDFGKNVIPLYLEEGEKLYAYPFK-GYWKDVGTIESLWEANMELLRPEN 262 (380)
T ss_pred -----cCCchhhhHHHHHHHHhhcCCeEEEEEeC-CEEEeCCCHHHHHHHHHHHcCCCc
Confidence 0112344556777643 22 3444443 368889999999888777665443
No 28
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.53 E-value=2.5e-05 Score=86.95 Aligned_cols=227 Identities=14% Similarity=0.179 Sum_probs=125.9
Q ss_pred cEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEE
Q 006541 262 KLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIH 341 (641)
Q Consensus 262 k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~ 341 (641)
.+.++.||||.|||||.+.||.++|+. |+++++..++.+.. .+.. .+++.++.. .+...+++... ++.
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~l~~i~-gkpli~~~l~~l~~----~~~~-~iivv~~~~-~~~i~~~~~~~-----~~~ 72 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKVLQTLL-GEPMLRFVYRALRP----LFGD-NVWTVVGHR-ADMVRAAFPDE-----DAR 72 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCceecccC-CCcHHHHHHHHHHh----cCCC-cEEEEECCC-HHHHHHhcccc-----Cce
Confidence 578899999999999988999999995 89999998887754 2322 355666654 34444444321 122
Q ss_pred EEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcc-cccccCHHHHHHHhh--cCC
Q 006541 342 SLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVADPKIFNHLIQ--NQI 418 (641)
Q Consensus 342 ~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~Dp~~lg~~~~--~~~ 418 (641)
+..|. .|.|-|..++.++ +.|.+.+.+++++.+.|. +.. +..+-.+++ .+.
T Consensus 73 ~v~~~-----------------~~~Gt~~al~~a~------~~l~~~~~d~vlv~~gD~P~i~---~~~i~~li~~~~~~ 126 (456)
T PRK14356 73 FVLQE-----------------QQLGTGHALQCAW------PSLTAAGLDRVLVVNGDTPLVT---TDTIDDFLKEAAGA 126 (456)
T ss_pred EEEcC-----------------CCCCcHHHHHHHH------HHHhhcCCCcEEEEeCCcccCC---HHHHHHHHHHHhcC
Confidence 22121 1344441355444 334444678999999999 443 333322332 245
Q ss_pred ceEEEEeccCCCCCcceEEEeeCCeE-EEEEecCCCccccCCCCceeeeeceeeeHHHHHHHhhcCCCccceeecccccC
Q 006541 419 EYCMEVAPVPSIDLRNSLINLRPGKF-QLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVN 497 (641)
Q Consensus 419 ~~~~evv~k~~~d~kgG~l~~~~g~~-~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~ 497 (641)
+..+-+.+-..+. .-|++...+|+. .++|-...++..........|++-.+|+-++++++++... ...
T Consensus 127 ~~~l~~~~~~~~~-~~g~v~~~~g~V~~~~ek~~~~~~~~~~~~~~~~~GiY~f~~~~l~~ll~~l~----------~~~ 195 (456)
T PRK14356 127 DLAFMTLTLPDPG-AYGRVVRRNGHVAAIVEAKDYDEALHGPETGEVNAGIYYLRLDAVESLLPRLT----------NAN 195 (456)
T ss_pred CEEEEEEEcCCCC-CceEEEEcCCeEEEEEECCCCChHHhhhhcCeEEEEEEEEEHHHHHHHHHhcc----------Ccc
Confidence 5555554444443 346665556654 3445333322211111224578877888888777654210 000
Q ss_pred CCCchhhhHhhhhHhhcC--C--CceEEEEec-cccccccCCchhhhhh
Q 006541 498 DDQIISRGTAADSAIQFF--D--HTIGINVAQ-SRYLPVNSTSDLLLLQ 541 (641)
Q Consensus 498 ~~~~~qlE~~i~d~i~~f--~--~~~~i~V~R-~rF~PvKn~~dll~~~ 541 (641)
...-+.+ .|+++.+ . +..++.+.. ..|.-+.+.+|+..++
T Consensus 196 ~~~e~~l----td~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~ 240 (456)
T PRK14356 196 KSGEYYI----TDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSE 240 (456)
T ss_pred cCCcEEH----HHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHH
Confidence 1111333 3444443 1 344555533 4678898988887654
No 29
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.43 E-value=7.1e-05 Score=82.60 Aligned_cols=199 Identities=13% Similarity=0.224 Sum_probs=117.7
Q ss_pred hcCcEEEEEEcCCCCCCCC---CCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHc-C
Q 006541 259 LLDKLVVVKFNGALGTNMG---FSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKY-S 334 (641)
Q Consensus 259 ~l~k~avv~LaGGlGTrlG---~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~-~ 334 (641)
+.+++..|.||||.||||. .+.||.++||....+++|..++++... |+. -.+|.+.. ..+...++|.+. .
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~----Gi~-~i~iv~~~-~~~~i~~~~~~~~~ 75 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNS----GYL-RIYVLTQY-KSHSLDRHISQTWR 75 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHC----CCC-EEEEEecc-CHHHHHHHHHhCcC
Confidence 4578899999999999999 899999999974449999998888752 321 24555554 567888888742 2
Q ss_pred CCCceEEEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccC-HHHHHHH
Q 006541 335 NSKVDIHSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVAD-PKIFNHL 413 (641)
Q Consensus 335 ~fg~~v~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~D-p~~lg~~ 413 (641)
..++.+.++.+ .| .... . .+-.|-|.|..++.++ +.+....-+|++|.+.|++.. .| -.++-++
T Consensus 76 ~~~~~~~~~~~--~~----~~~~-~-~~~~~lGta~al~~a~------~~i~~~~~~~~lv~~gD~v~~-~dl~~l~~~h 140 (407)
T PRK00844 76 LSGLLGNYITP--VP----AQQR-L-GKRWYLGSADAIYQSL------NLIEDEDPDYVVVFGADHVYR-MDPRQMVDFH 140 (407)
T ss_pred ccccCCCeEEE--CC----cccC-C-CCCcccCCHHHHHHHH------HHHHhcCCCEEEEecCCEEEc-CCHHHHHHHH
Confidence 22222222111 01 0000 0 1123567761344443 223333447899999999643 34 3567777
Q ss_pred hhcCCceEEEEe--ccCCCCCcceEEEee-CCeEEEEEecCCCccccC---C-CCceeeeeceeeeHHHHHHHhh
Q 006541 414 IQNQIEYCMEVA--PVPSIDLRNSLINLR-PGKFQLVDITQNPTKQSG---G-KFKFINTRSMWVNLRAIKRLID 481 (641)
Q Consensus 414 ~~~~~~~~~evv--~k~~~d~kgG~l~~~-~g~~~lvEysq~~~~~~~---~-~~~~fNtnni~~~l~~l~~~~~ 481 (641)
.+++++..+-+. +...+ ..-|++... +|+ +.++.+=|..... . ...+.|++-..++-+.|.+.++
T Consensus 141 ~~~~~~~ti~~~~~~~~~~-~~~Gvv~~d~~g~--v~~~~eKp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~ 212 (407)
T PRK00844 141 IESGAGVTVAAIRVPREEA-SAFGVIEVDPDGR--IRGFLEKPADPPGLPDDPDEALASMGNYVFTTDALVDALR 212 (407)
T ss_pred HhcCCcEEEEEEecchHHc-ccCCEEEECCCCC--EEEEEECCCCcccccCCCCCcEEEeEEEEEeHHHHHHHHH
Confidence 778877655443 22222 346777654 455 3344343432211 1 2235688888888887766654
No 30
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.38 E-value=0.00011 Score=79.15 Aligned_cols=227 Identities=14% Similarity=0.170 Sum_probs=135.0
Q ss_pred EEEEcCCCCCCCC---CCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEE
Q 006541 265 VVKFNGALGTNMG---FSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIH 341 (641)
Q Consensus 265 vv~LaGGlGTrlG---~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~ 341 (641)
.|.||||.||||+ ...||.++|+. |+++++..++.+.. .|. -.++++++....+...+++.+...+++++.
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~l~pv~-g~pli~~~l~~l~~----~gi-~~i~vv~~~~~~~~i~~~~~~~~~~~~~~~ 75 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQLIPVA-NKPILQYAIEDLAE----AGI-TDIGIVVGPVTGEEIKEIVGEGERFGAKIT 75 (353)
T ss_pred EEEECCcCcCccCccccCCCccccEEC-CEeHHHHHHHHHHH----CCC-CEEEEEeCCCCHHHHHHHHhcccccCceEE
Confidence 4789999999996 48899999996 56999988887764 232 146778888678889999987667777765
Q ss_pred EEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccC-HHHHHHHhhcCCce
Q 006541 342 SLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVAD-PKIFNHLIQNQIEY 420 (641)
Q Consensus 342 ~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~D-p~~lg~~~~~~~~~ 420 (641)
+..|. .|.|.+..++.++.. + . + +-+++.+.|++.. .| -.++-.+.+++++.
T Consensus 76 ~~~~~-----------------~~~G~~~al~~a~~~------l-~-~-~~~li~~gD~~~~-~~l~~l~~~~~~~~~d~ 128 (353)
T TIGR01208 76 YIVQG-----------------EPLGLAHAVYTARDF------L-G-D-DDFVVYLGDNLIQ-DGISRFVKSFEEKDYDA 128 (353)
T ss_pred EEECC-----------------CCCCHHHHHHHHHHh------c-C-C-CCEEEEECCeecC-ccHHHHHHHHHhcCCCc
Confidence 55442 245665235554422 2 1 1 2345667899432 33 34667777788887
Q ss_pred EEEEeccCCCCCcceEEEeeCCeEEEEEecCCCccccCCCCceeeeeceeeeHHHHHHHhhcCCCccceeecccccCCCC
Q 006541 421 CMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDDQ 500 (641)
Q Consensus 421 ~~evv~k~~~d~kgG~l~~~~g~~~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~~~~ 500 (641)
.+-+.+...+ ..-|++...++. .+.++.+-|.... -...|++-.+++-..+ +.+++.. + ... .
T Consensus 129 ti~~~~~~~~-~~~g~~~~~~~~-~v~~~~ekp~~~~---~~~~~~Giy~~~~~l~-~~l~~~~---~------~~~--~ 191 (353)
T TIGR01208 129 LILLTKVRDP-TAFGVAVLEDGK-RILKLVEKPKEPP---SNLAVVGLYMFRPLIF-EAIKNIK---P------SWR--G 191 (353)
T ss_pred EEEEEECCCh-hhCeEEEEcCCC-cEEEEEECCCCCC---ccceEEEEEEECHHHH-HHHHhcC---C------CCC--C
Confidence 7776654443 335766654332 3444444343221 1245888888876433 3333210 0 000 1
Q ss_pred chhhhHhhhhHhhcC--C--CceEEEEeccccccccCCchhhhhhhhhcc
Q 006541 501 IISRGTAADSAIQFF--D--HTIGINVAQSRYLPVNSTSDLLLLQSDLYT 546 (641)
Q Consensus 501 ~~qlE~~i~d~i~~f--~--~~~~i~V~R~rF~PvKn~~dll~~~sd~y~ 546 (641)
|..+-|+++.+ + +..++.++ ..+..+.+.+|++.++.++-.
T Consensus 192 ----e~~l~d~l~~l~~~g~~v~~~~~~-g~w~digt~~dl~~a~~~ll~ 236 (353)
T TIGR01208 192 ----ELEITDAIQWLIEKGYKVGGSKVT-GWWKDTGKPEDLLDANRLILD 236 (353)
T ss_pred ----cEEHHHHHHHHHHcCCeEEEEEeC-cEEEeCCCHHHHHHHHHHHHh
Confidence 12233444433 1 23344443 247899999999888777654
No 31
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=8.8e-05 Score=80.73 Aligned_cols=228 Identities=12% Similarity=0.161 Sum_probs=136.9
Q ss_pred EEEEEcCCCCCCCC---CCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceE
Q 006541 264 VVVKFNGALGTNMG---FSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDI 340 (641)
Q Consensus 264 avv~LaGGlGTrlG---~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v 340 (641)
-.+.||||.||||- .+.||.++||. |+.+++.+++.+.. +| +-=++++-....+...++|.....+|++|
T Consensus 3 kavILagG~GtRLrPlT~~~PKPllpI~-gkPii~~~l~~L~~----~G--v~eivi~~~y~~~~i~~~~~d~~~~~~~I 75 (358)
T COG1208 3 KAVILAGGYGTRLRPLTDDRPKPLLPIA-GKPLIEYVLEALAA----AG--VEEIVLVVGYLGEQIEEYFGDGEGLGVRI 75 (358)
T ss_pred eEEEEeCCccccccccccCCCcccceeC-CccHHHHHHHHHHH----CC--CcEEEEEeccchHHHHHHHhcccccCCce
Confidence 36789999999995 67899999998 99999988887764 33 33333444555578899999887778877
Q ss_pred EEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccCHHHHHHHhhcCCce
Q 006541 341 HSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADPKIFNHLIQNQIEY 420 (641)
Q Consensus 341 ~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~~~~~ 420 (641)
.+..|.. |-|-|..+..++..- +.+=.++.|.|++.-.=--.++.++.+++...
T Consensus 76 ~y~~e~~-----------------~lGTag~l~~a~~~l---------~~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~ 129 (358)
T COG1208 76 TYVVEKE-----------------PLGTAGALKNALDLL---------GGDDFLVLNGDVLTDLDLSELLEFHKKKGALA 129 (358)
T ss_pred EEEecCC-----------------cCccHHHHHHHHHhc---------CCCcEEEEECCeeeccCHHHHHHHHHhccCcc
Confidence 6665543 445551344444221 22778889999954432234677777775555
Q ss_pred EEEEeccCCCCCcceEEEeeCCeEEEEEecCCCccccCCCCceeeeeceeeeHHHHHHHhhcCCCccceeecccccCCCC
Q 006541 421 CMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDDQ 500 (641)
Q Consensus 421 ~~evv~k~~~d~kgG~l~~~~g~~~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~~~~ 500 (641)
.+-.+.-..+ ..-|++...++.-.++++.+=|... ...-...|++-.+++=+.++ .++ ...
T Consensus 130 ~~~~~~~~~~-~~~Gvv~~~~~~~~v~~f~ekp~~~-~~~~~~in~Giyi~~~~v~~-~i~----------------~~~ 190 (358)
T COG1208 130 TIALTRVLDP-SEFGVVETDDGDGRVVEFREKPGPE-EPPSNLINAGIYIFDPEVFD-YIE----------------KGE 190 (358)
T ss_pred EEEEEecCCC-CcCceEEecCCCceEEEEEecCCCC-CCCCceEEeEEEEECHHHhh-hcc----------------cCC
Confidence 5544444444 4456665552335566666665321 11112458888888766555 111 111
Q ss_pred chhhhHhhhhHhhcC-CCc-eEEEEecc-ccccccCCchhhhhhhhhcc
Q 006541 501 IISRGTAADSAIQFF-DHT-IGINVAQS-RYLPVNSTSDLLLLQSDLYT 546 (641)
Q Consensus 501 ~~qlE~~i~d~i~~f-~~~-~~i~V~R~-rF~PvKn~~dll~~~sd~y~ 546 (641)
..-+|. +.++.. +.- ...-+..+ .|..+-+.+|++.+..++-.
T Consensus 191 ~~~~~~---~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~ 236 (358)
T COG1208 191 RFDFEE---ELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLR 236 (358)
T ss_pred cccchh---hHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHh
Confidence 222222 222221 111 12333333 89999999999988877654
No 32
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.36 E-value=0.00013 Score=82.10 Aligned_cols=185 Identities=11% Similarity=0.102 Sum_probs=110.5
Q ss_pred CcEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceE
Q 006541 261 DKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDI 340 (641)
Q Consensus 261 ~k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v 340 (641)
..++.|.||||.||||+.+.||.++|+. |+++++..++++... |.. .+++.++.. .+...++++.+. ..+
T Consensus 3 ~~~~avILAaG~gtRm~~~~pK~llpi~-gkpli~~~l~~l~~~----g~~-~iivvv~~~-~~~i~~~~~~~~---~~~ 72 (482)
T PRK14352 3 RPTAVIVLAAGAGTRMRSDTPKVLHTLA-GRSMLGHVLHAAAGL----APQ-HLVVVVGHD-RERVAPAVAELA---PEV 72 (482)
T ss_pred CCceEEEEcCCCCCcCCCCCCceeceeC-CccHHHHHHHHHHhc----CCC-cEEEEECCC-HHHHHHHhhccC---Ccc
Confidence 3567899999999999988899999995 799999888888752 332 566666654 456667765431 112
Q ss_pred EEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcc-cccccCH-HHHHHHhhcCC
Q 006541 341 HSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVADP-KIFNHLIQNQI 418 (641)
Q Consensus 341 ~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~~~~~~~ 418 (641)
.+..| ..|.|-|..++.+|.. +.+..-++++|.+.|. +....|. .++-.+.+++.
T Consensus 73 ~~~~~-----------------~~~~Gt~~si~~al~~------l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~ 129 (482)
T PRK14352 73 DIAVQ-----------------DEQPGTGHAVQCALEA------LPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGN 129 (482)
T ss_pred EEEeC-----------------CCCCCcHHHHHHHHHH------hccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCC
Confidence 22222 1244555246666642 2222457899999999 5433222 23444555566
Q ss_pred ceEEEEeccCCCCCcceEEEe-eCCeE-EEEEecCCCccccCCCCceeeeeceeeeHHHHHHHhh
Q 006541 419 EYCMEVAPVPSIDLRNSLINL-RPGKF-QLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLID 481 (641)
Q Consensus 419 ~~~~evv~k~~~d~kgG~l~~-~~g~~-~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~~~ 481 (641)
.+.+-+.+...+ ..-|.+.. .+|++ .++|-.+.+.+.. .....|++-.+|+-+.|.++++
T Consensus 130 ~~~v~~~~~~~p-~~yg~~~~~~~g~V~~~~EKp~~~~~~~--~~~~~~~Giy~f~~~~l~~~~~ 191 (482)
T PRK14352 130 AVTVLTTTLDDP-TGYGRILRDQDGEVTAIVEQKDATPSQR--AIREVNSGVYAFDAAVLRSALA 191 (482)
T ss_pred eEEEEEeecCCC-CCCCEEEECCCCCEEEEEECCCCCHHHh--hcceEEEEEEEEEHHHHHHHHH
Confidence 555444443333 34555544 35553 3455433322211 1224588888999888777664
No 33
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=98.35 E-value=0.00011 Score=74.26 Aligned_cols=229 Identities=14% Similarity=0.125 Sum_probs=133.6
Q ss_pred EEEEEcCCCCCCCC---CCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceE
Q 006541 264 VVVKFNGALGTNMG---FSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDI 340 (641)
Q Consensus 264 avv~LaGGlGTrlG---~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v 340 (641)
.+|+||||.||||+ ...||.++|+. |+++++..++.+.+ .|+. ..++.++. ..+...+++++...+++++
T Consensus 2 ~avIlAaG~g~Rl~plt~~~pK~l~~i~-g~~li~~~l~~l~~----~~~~-~i~vv~~~-~~~~~~~~~~~~~~~~~~i 74 (236)
T cd04189 2 KGLILAGGKGTRLRPLTYTRPKQLIPVA-GKPIIQYAIEDLRE----AGIE-DIGIVVGP-TGEEIKEALGDGSRFGVRI 74 (236)
T ss_pred eEEEECCCccccccccccCCCceeeEEC-CcchHHHHHHHHHH----CCCC-EEEEEcCC-CHHHHHHHhcchhhcCCeE
Confidence 46889999999996 68999999996 77999988887764 2432 46777777 6678888888766677776
Q ss_pred EEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccCHHHHHHHhhcCCce
Q 006541 341 HSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADPKIFNHLIQNQIEY 420 (641)
Q Consensus 341 ~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~~~~~ 420 (641)
.+..|. .|-|.|..++.++.. +. +-.++ +.+.|.+...---.++-.+.+++.+.
T Consensus 75 ~~~~~~-----------------~~~g~~~sl~~a~~~-------i~-~~~~l-i~~~D~~~~~~~~~~~~~~~~~~~~~ 128 (236)
T cd04189 75 TYILQE-----------------EPLGLAHAVLAARDF-------LG-DEPFV-VYLGDNLIQEGISPLVRDFLEEDADA 128 (236)
T ss_pred EEEECC-----------------CCCChHHHHHHHHHh-------cC-CCCEE-EEECCeecCcCHHHHHHHHHhcCCce
Confidence 554431 234555134444421 11 23454 46678853221123455566778888
Q ss_pred EEEEeccCCCCCcceEEEeeCCeEEEEEecCCCccccCCCCceeeeeceeeeHHHHHHHhhcCCCccceeecccccCCCC
Q 006541 421 CMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDDQ 500 (641)
Q Consensus 421 ~~evv~k~~~d~kgG~l~~~~g~~~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~~~~ 500 (641)
.+-+.+-..+ ..-|++...+| .+.++.+-|.+. .-.+.+++..+++-+.++.+ +... .... .
T Consensus 129 ~~~~~~~~~~-~~~g~~~~d~~--~v~~~~ek~~~~---~~~~~~~Giy~~~~~~~~~l-~~~~---------~~~~--~ 190 (236)
T cd04189 129 SILLAEVEDP-RRFGVAVVDDG--RIVRLVEKPKEP---PSNLALVGVYAFTPAIFDAI-SRLK---------PSWR--G 190 (236)
T ss_pred EEEEEECCCc-ccceEEEEcCC--eEEEEEECCCCC---CCCEEEEEEEEeCHHHHHHH-HhcC---------CCCC--C
Confidence 7776654433 44577665555 556665544322 12356899889986555433 2110 0000 0
Q ss_pred chhhhHhhhhHhhcCCCceEEEEeccccccccCCchhhhhhhhh
Q 006541 501 IISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTSDLLLLQSDL 544 (641)
Q Consensus 501 ~~qlE~~i~d~i~~f~~~~~i~V~R~rF~PvKn~~dll~~~sd~ 544 (641)
-+-++.++..++..=....+++++ ..|..+.+.+|+..++.++
T Consensus 191 ~~~~~d~~~~~i~~g~~v~~~~~~-~~~~~i~t~~dl~~a~~~~ 233 (236)
T cd04189 191 ELEITDAIQWLIDRGRRVGYSIVT-GWWKDTGTPEDLLEANRLL 233 (236)
T ss_pred eEEHHHHHHHHHHcCCcEEEEEcC-ceEEeCCCHHHHHHHHHHH
Confidence 112223333232211123344443 3579999999988776553
No 34
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.34 E-value=3.8e-05 Score=85.31 Aligned_cols=226 Identities=15% Similarity=0.130 Sum_probs=123.1
Q ss_pred EEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEEE
Q 006541 263 LVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHS 342 (641)
Q Consensus 263 ~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~~ 342 (641)
++++.||||.|||||.+.||.++|+. |+++++..++.+... |.. ..++.+... .+...++++++. + +.+
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~ll~v~-gkpli~~~l~~l~~~----g~~-~iivvv~~~-~~~i~~~~~~~~--~--i~~ 70 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKVLHPLG-GKSLVERVLDSCEEL----KPD-RRLVIVGHQ-AEEVEQSLAHLP--G--LEF 70 (450)
T ss_pred ceEEEEeCCCCccCCCCCChhcCEEC-ChhHHHHHHHHHHhC----CCC-eEEEEECCC-HHHHHHHhcccC--C--eEE
Confidence 57899999999999988999999994 679999988887652 332 445555543 345566665432 2 222
Q ss_pred EecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcc-cccccC-HHHHHHHhhcCCce
Q 006541 343 LSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVAD-PKIFNHLIQNQIEY 420 (641)
Q Consensus 343 f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~D-p~~lg~~~~~~~~~ 420 (641)
..|. .+.|.+..++.++. .+. ..-++++|...|. +....+ -.++..+.+.++++
T Consensus 71 v~~~-----------------~~~G~~~sv~~~~~------~l~-~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~ 126 (450)
T PRK14360 71 VEQQ-----------------PQLGTGHAVQQLLP------VLK-GFEGDLLVLNGDVPLLRPETLEALLNTHRSSNADV 126 (450)
T ss_pred EEeC-----------------CcCCcHHHHHHHHH------Hhh-ccCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcE
Confidence 2221 13454513444432 222 2235678899998 533222 23355555666776
Q ss_pred EEEEeccCCCCCcceEEEe-eCCeE-EEEEecCCCccccCCCCceeeeeceeeeHHHHHHHhhcCCCccceeecccccCC
Q 006541 421 CMEVAPVPSIDLRNSLINL-RPGKF-QLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVND 498 (641)
Q Consensus 421 ~~evv~k~~~d~kgG~l~~-~~g~~-~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~~ 498 (641)
.+-+.++..+. .-|.+.. .+|+. .++|-....++.. .-.+.|++-.+|+-+.+.+++++...
T Consensus 127 ~~~~~~~~~~~-~~g~~~~d~~g~v~~~~ek~~~~~~~~--~~~~~~~Giy~f~~~~l~~~~~~~~~------------- 190 (450)
T PRK14360 127 TLLTARLPNPK-GYGRVFCDGNNLVEQIVEDRDCTPAQR--QNNRINAGIYCFNWPALAEVLPKLSS------------- 190 (450)
T ss_pred EEEEEecCCCC-CccEEEECCCCCEEEEEECCCCChhHh--cCcEEEEEEEEEEHHHHHHHHhhccc-------------
Confidence 65444444443 2455543 34543 3444322211111 12245888888998878777643110
Q ss_pred CCchhhhHhhhhHhhcCCCceEEEEec-cccccccCCchhhhh
Q 006541 499 DQIISRGTAADSAIQFFDHTIGINVAQ-SRYLPVNSTSDLLLL 540 (641)
Q Consensus 499 ~~~~qlE~~i~d~i~~f~~~~~i~V~R-~rF~PvKn~~dll~~ 540 (641)
...+-|..+-|+++.+.+..++.|.- .+..=+.+..|+..+
T Consensus 191 -~~~~~e~~~td~i~~~~~~~~~~v~~~~~~~~i~~~~dl~~~ 232 (450)
T PRK14360 191 -NNDQKEYYLTDTVSLLDPVMAVEVEDYQEINGINDRKQLAQC 232 (450)
T ss_pred -cccCCceeHHHHHHHHhhceEEecCCHHHhhcCCCHHHHHHH
Confidence 00123344556666666555666632 344445555565443
No 35
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.31 E-value=0.00013 Score=80.96 Aligned_cols=231 Identities=14% Similarity=0.074 Sum_probs=128.9
Q ss_pred CcEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceE
Q 006541 261 DKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDI 340 (641)
Q Consensus 261 ~k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v 340 (641)
.++..+.||||.|||||...||.++|+. |+++++..++++.. .|+ -..++.++.. ++...+++.++ +.++
T Consensus 4 ~~~~aiILAaG~gsR~~~~~pK~ll~v~-gkpli~~~l~~l~~----~gi-~~ivvv~~~~-~~~i~~~~~~~---~~~~ 73 (446)
T PRK14353 4 RTCLAIILAAGEGTRMKSSLPKVLHPVA-GRPMLAHVLAAAAS----LGP-SRVAVVVGPG-AEAVAAAAAKI---APDA 73 (446)
T ss_pred ccceEEEEcCCCCCccCCCCCcccCEEC-CchHHHHHHHHHHh----CCC-CcEEEEECCC-HHHHHHHhhcc---CCCc
Confidence 3578899999999999988899999995 57999998888765 232 2456666653 45666666542 2222
Q ss_pred EEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcc-cccccCHHHHHHHh---hc
Q 006541 341 HSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVADPKIFNHLI---QN 416 (641)
Q Consensus 341 ~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~Dp~~lg~~~---~~ 416 (641)
..+.|. .|.|.+..++.++. . +.++.+++++.+.|. +. ++..+-.++ +.
T Consensus 74 ~~~~~~-----------------~~~G~~~sl~~a~~------~-l~~~~~~~lv~~~D~P~i---~~~~l~~l~~~~~~ 126 (446)
T PRK14353 74 EIFVQK-----------------ERLGTAHAVLAARE------A-LAGGYGDVLVLYGDTPLI---TAETLARLRERLAD 126 (446)
T ss_pred eEEEcC-----------------CCCCcHHHHHHHHH------H-HhccCCCEEEEeCCcccC---CHHHHHHHHHhHhc
Confidence 222221 13355413554442 2 223457888889998 53 444443333 34
Q ss_pred CCceEEEEeccCCCCCcceEEEeeCCeEEEEEecCCCccccCC-CCceeeeeceeeeHHHHHHHhhcCCCccceeecccc
Q 006541 417 QIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGG-KFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKE 495 (641)
Q Consensus 417 ~~~~~~evv~k~~~d~kgG~l~~~~g~~~lvEysq~~~~~~~~-~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~ 495 (641)
+.+..+-+.+-..+ .+-|.+...+|+ +.++.+=|+....+ ...+.|++-.+++-+.+.+.+++.. + +.
T Consensus 127 ~~~~~i~~~~~~~~-~~~g~~~~~~g~--v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~-------~-~~ 195 (446)
T PRK14353 127 GADVVVLGFRAADP-TGYGRLIVKGGR--LVAIVEEKDASDEERAITLCNSGVMAADGADALALLDRVG-------N-DN 195 (446)
T ss_pred CCcEEEEEEEeCCC-CcceEEEECCCe--EEEEEECCCCChHHhhceEEEEEEEEEEHHHHHHHHHhhc-------c-cC
Confidence 56776666654433 345665555564 44544433221111 1124577778888766666554211 0 00
Q ss_pred cCCCCchhhhHhhhhHhhcCCCceEEEEeccccccccCCchhhhhh
Q 006541 496 VNDDQIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTSDLLLLQ 541 (641)
Q Consensus 496 v~~~~~~qlE~~i~d~i~~f~~~~~i~V~R~rF~PvKn~~dll~~~ 541 (641)
...-+-++.++..+++.=....++..+...|.-|.+.+|+..++
T Consensus 196 --~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~ 239 (446)
T PRK14353 196 --AKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAE 239 (446)
T ss_pred --CCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHH
Confidence 01112233333333322123445555555688999999997665
No 36
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.30 E-value=0.00025 Score=78.85 Aligned_cols=203 Identities=10% Similarity=0.197 Sum_probs=120.6
Q ss_pred HHHhhcCcEEEEEEcCCCCCCCCC---CCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHH
Q 006541 255 ETKMLLDKLVVVKFNGALGTNMGF---SGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLE 331 (641)
Q Consensus 255 ~~~~~l~k~avv~LaGGlGTrlG~---~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~ 331 (641)
.++++-.++.+|.||||.||||.- ..||.++|+....+++|..++++.. .|+. ..+|.+.. ..+...++|.
T Consensus 8 ~~~~~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~----~Gi~-~i~vv~~~-~~~~i~~~~~ 81 (425)
T PRK00725 8 LARQLTRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCIN----SGIR-RIGVLTQY-KAHSLIRHIQ 81 (425)
T ss_pred hhHhhhcceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHH----CCCC-eEEEEecC-CHHHHHHHHH
Confidence 456777899999999999999975 7899999996433599999888875 3432 35666665 4677888887
Q ss_pred Hc-CCC----CceEEEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccC
Q 006541 332 KY-SNS----KVDIHSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVAD 406 (641)
Q Consensus 332 k~-~~f----g~~v~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~D 406 (641)
+. +.. +..+..+.|.. ....+-.|-|.|..++.++ +.+....-++++|.+.|++...--
T Consensus 82 ~~~~~~~~~~~~~i~i~~~~~----------~~~~e~~~lGTa~al~~a~------~~l~~~~~d~~lVl~gD~l~~~dl 145 (425)
T PRK00725 82 RGWSFFREELGEFVDLLPAQQ----------RVDEENWYRGTADAVYQNL------DIIRRYDPKYVVILAGDHIYKMDY 145 (425)
T ss_pred hhhcccccCCCCeEEEeCCcc----------cCCCCccccCcHHHHHHHH------HHHHhcCCCEEEEecCCeEeccCH
Confidence 52 110 11111111110 0011224667762355554 233333347899999999653321
Q ss_pred HHHHHHHhhcCCceEEEEeccC-CCCCcceEEEee-CCeEEEEEecCCCcccc---CC-CCceeeeeceeeeHHHHHHHh
Q 006541 407 PKIFNHLIQNQIEYCMEVAPVP-SIDLRNSLINLR-PGKFQLVDITQNPTKQS---GG-KFKFINTRSMWVNLRAIKRLI 480 (641)
Q Consensus 407 p~~lg~~~~~~~~~~~evv~k~-~~d~kgG~l~~~-~g~~~lvEysq~~~~~~---~~-~~~~fNtnni~~~l~~l~~~~ 480 (641)
-.++-++.++++++.+-+.+.. .....-|++... +|+ +.++.+=|.... .. ...+.|++-..++-+.|.+.+
T Consensus 146 ~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~~~--V~~~~EKp~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L 223 (425)
T PRK00725 146 SRMLADHVESGADCTVACLEVPREEASAFGVMAVDENDR--ITAFVEKPANPPAMPGDPDKSLASMGIYVFNADYLYELL 223 (425)
T ss_pred HHHHHHHHHcCCCEEEEEEecchhhcccceEEEECCCCC--EEEEEECCCCccccccCccceEEEeeEEEEeHHHHHHHH
Confidence 3567777888887766553321 222345777664 454 333333332211 11 223458888888888877766
Q ss_pred h
Q 006541 481 D 481 (641)
Q Consensus 481 ~ 481 (641)
.
T Consensus 224 ~ 224 (425)
T PRK00725 224 E 224 (425)
T ss_pred H
Confidence 4
No 37
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=98.29 E-value=0.00011 Score=73.22 Aligned_cols=216 Identities=13% Similarity=0.179 Sum_probs=129.1
Q ss_pred EEEEcCCCCCCCC---CCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEE
Q 006541 265 VVKFNGALGTNMG---FSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIH 341 (641)
Q Consensus 265 vv~LaGGlGTrlG---~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~ 341 (641)
+|.||||.||||+ ...||.++|+. |+++++..++++... |.+ ..++.++.. .+...+++.+...+++++.
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~-g~pli~~~l~~l~~~----~~~-~iivv~~~~-~~~i~~~~~~~~~~~~~i~ 73 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVG-GKPILETIIDRFIAQ----GFR-NFYISVNYL-AEMIEDYFGDGSKFGVNIS 73 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeEC-CcchHHHHHHHHHHC----CCc-EEEEECccC-HHHHHHHHCCccccCccEE
Confidence 4789999999996 47899999995 579999888888753 333 345556553 5567777776544555544
Q ss_pred EEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccCHHHHHHHhhcCCceE
Q 006541 342 SLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADPKIFNHLIQNQIEYC 421 (641)
Q Consensus 342 ~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~~~~~~ 421 (641)
+..|. .|.|-| +....+.. ..-++++|.+.|++....--.++..+.+++.+..
T Consensus 74 ~~~~~-----------------~~~g~~-~~l~~~~~---------~~~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~ 126 (220)
T cd06426 74 YVRED-----------------KPLGTA-GALSLLPE---------KPTDPFLVMNGDILTNLNYEHLLDFHKENNADAT 126 (220)
T ss_pred EEECC-----------------CCCcch-HHHHHHHh---------hCCCCEEEEcCCEeeccCHHHHHHHHHhcCCCEE
Confidence 33221 133556 54433322 2257789999998443222345666667777877
Q ss_pred EEEeccCCCCCcceEEEeeCCeEEEEEecCCCccccCCCCceeeeeceeeeHHHHHHHhhcCCCccceeecccccCCCCc
Q 006541 422 MEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDDQI 501 (641)
Q Consensus 422 ~evv~k~~~d~kgG~l~~~~g~~~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~~~~~ 501 (641)
+-+.+.. .....|++...+| .+.++.+=|.. -.+.|++-.+++-+.++.+ +. ..-
T Consensus 127 ~~~~~~~-~~~~~g~~~~d~~--~v~~~~ek~~~-----~~~~~~Giy~~~~~~~~~i-~~----------------~~~ 181 (220)
T cd06426 127 VCVREYE-VQVPYGVVETEGG--RITSIEEKPTH-----SFLVNAGIYVLEPEVLDLI-PK----------------NEF 181 (220)
T ss_pred EEEEEcC-CCCcceEEEECCC--EEEEEEECCCC-----CCeEEEEEEEEcHHHHhhc-CC----------------CCC
Confidence 7665543 3344566554444 45566543322 1245888888887765442 10 011
Q ss_pred hhhhHhhhhHhhcCCCceEEEEeccccccccCCchhhhh
Q 006541 502 ISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTSDLLLL 540 (641)
Q Consensus 502 ~qlE~~i~d~i~~f~~~~~i~V~R~rF~PvKn~~dll~~ 540 (641)
+.+.-++...+.--.+..+++++ ..|.-+.+.+|+..+
T Consensus 182 ~~l~~~~~~~i~~~~~i~~~~~~-~~w~~igt~~dl~~a 219 (220)
T cd06426 182 FDMPDLIEKLIKEGKKVGVFPIH-EYWLDIGRPEDYEKA 219 (220)
T ss_pred cCHHHHHHHHHHCCCcEEEEEeC-CeEEeCCCHHHHHhh
Confidence 23444455444432344555555 679999998887653
No 38
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=98.29 E-value=8.3e-05 Score=73.73 Aligned_cols=216 Identities=15% Similarity=0.185 Sum_probs=126.2
Q ss_pred EEEEcCCCCCCCCC---CCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEE
Q 006541 265 VVKFNGALGTNMGF---SGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIH 341 (641)
Q Consensus 265 vv~LaGGlGTrlG~---~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~ 341 (641)
+|.||||.|||||- ..||.++|+. |+++++..++++.. .|.. .++|.|+. ..+...+++.....++..+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~-g~pli~~~l~~l~~----~g~~-~v~vv~~~-~~~~i~~~~~~~~~~~~~~~ 73 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVA-GRPFLEYLLEYLAR----QGIS-RIVLSVGY-LAEQIEEYFGDGYRGGIRIY 73 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEEC-CcchHHHHHHHHHH----CCCC-EEEEEccc-CHHHHHHHHcCccccCceEE
Confidence 37899999999974 5799999997 67999988888764 2322 35555554 45677778775433444432
Q ss_pred EEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccCH-HHHHHHhhcCCce
Q 006541 342 SLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADP-KIFNHLIQNQIEY 420 (641)
Q Consensus 342 ~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~Dp-~~lg~~~~~~~~~ 420 (641)
+..| ..+-|.+..++.++.. + +-+++++.+.|.+. ..|. .++-.+.+.+.+.
T Consensus 74 ~~~~-----------------~~~~G~~~~l~~a~~~------~---~~~~~lv~~~D~~~-~~~~~~~l~~~~~~~~~~ 126 (223)
T cd06915 74 YVIE-----------------PEPLGTGGAIKNALPK------L---PEDQFLVLNGDTYF-DVDLLALLAALRASGADA 126 (223)
T ss_pred EEEC-----------------CCCCcchHHHHHHHhh------c---CCCCEEEEECCccc-CCCHHHHHHHHHhCCCcE
Confidence 2111 1245555246666532 1 23788999999943 2232 3345555667888
Q ss_pred EEEEeccCCCCCcceEEEee-CCeEEEEEecCCCccccCCCCceeeeeceeeeHHHHHHHhhcCCCccceeecccccCCC
Q 006541 421 CMEVAPVPSIDLRNSLINLR-PGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDD 499 (641)
Q Consensus 421 ~~evv~k~~~d~kgG~l~~~-~g~~~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~~~ 499 (641)
++-+.+...+ ..-|.+... +|+ +.++.+-|... ...+.+++-.+++-++++++.+. +.
T Consensus 127 ~~~~~~~~~~-~~~~~v~~d~~~~--v~~~~ek~~~~---~~~~~~~Giy~~~~~~l~~~~~~-----~~---------- 185 (223)
T cd06915 127 TMALRRVPDA-SRYGNVTVDGDGR--VIAFVEKGPGA---APGLINGGVYLLRKEILAEIPAD-----AF---------- 185 (223)
T ss_pred EEEEEECCCC-CcceeEEECCCCe--EEEEEeCCCCC---CCCcEEEEEEEECHHHHhhCCcc-----CC----------
Confidence 7777665443 344554332 344 45555544322 12245888888898887664211 00
Q ss_pred CchhhhH-hhhhHhhcCCCceEEEEeccccccccCCchhhhh
Q 006541 500 QIISRGT-AADSAIQFFDHTIGINVAQSRYLPVNSTSDLLLL 540 (641)
Q Consensus 500 ~~~qlE~-~i~d~i~~f~~~~~i~V~R~rF~PvKn~~dll~~ 540 (641)
.+|+ ++..++.. .+..+++++ ..+..|.+.+|+..+
T Consensus 186 ---~~~~~~~~~l~~~-~~v~~~~~~-~~~~dI~t~~dl~~a 222 (223)
T cd06915 186 ---SLEADVLPALVKR-GRLYGFEVD-GYFIDIGIPEDYARA 222 (223)
T ss_pred ---ChHHHHHHHHHhc-CcEEEEecC-CeEEecCCHHHHHhh
Confidence 1122 22222221 134556665 568889888888765
No 39
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.26 E-value=0.00018 Score=78.04 Aligned_cols=243 Identities=12% Similarity=0.081 Sum_probs=136.0
Q ss_pred cEEEEEEcCCCCCCCC---CCCCCeeeecCCCC-ChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCC
Q 006541 262 KLVVVKFNGALGTNMG---FSGPKSAIEVKNNL-TPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSK 337 (641)
Q Consensus 262 k~avv~LaGGlGTrlG---~~~pK~~l~v~~~~-tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg 337 (641)
++.+|.||||.||||. .+.||.|+||. |+ +++|.+++++.+. |+. -.+|.++..-.+...++|.+...++
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~-gk~PlIe~~l~~L~~~----Gi~-~I~iv~~~~~~~~I~~~l~~~~~~~ 75 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPFG-GRYRLIDFPLSNMVNA----GIR-NVFIFFKNKERQSLFDHLGSGREWD 75 (369)
T ss_pred cEEEEEECCCCCccccccccCCcccccccC-CeeeEEEEEhhhhhcc----CCC-EEEEEeCCCcHHHHHHHHhCCCCCC
Confidence 5778999999999996 58899999996 66 8999988888762 332 4666666655458999998766677
Q ss_pred ceEEEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccCH-HHHHHHhhc
Q 006541 338 VDIHSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADP-KIFNHLIQN 416 (641)
Q Consensus 338 ~~v~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~Dp-~~lg~~~~~ 416 (641)
+++. +..+..+. ..+ -.|-|-| +.+...+. ++.+...+-++++|.|.|++.. .|. .++-++.++
T Consensus 76 ~~~~---~~~~~~~~-~~e------~~~l~tg-~~~a~~~a---~~~l~~~~~~~~lvlnGD~l~~-~dl~~ll~~h~~~ 140 (369)
T TIGR02092 76 LHRK---RDGLFVFP-YND------RDDLSEG-GKRYFSQN---LEFLKRSTSEYTVVLNSHMVCN-IDLKAVLKYHEET 140 (369)
T ss_pred cccc---cCcEEEEe-ccC------CCCcccC-hHHHHHHH---HHHHHhCCCCEEEEECCCEEEe-cCHHHHHHHHHHc
Confidence 6531 11111110 000 1233334 43322211 1222222347899999999654 443 567777778
Q ss_pred CCceEEEEeccC--CCCCcceEEEee-CCeEEEEEecCCCccccCCCCceeeeeceeeeHHHHHHHhhcCCCccceeecc
Q 006541 417 QIEYCMEVAPVP--SIDLRNSLINLR-PGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSS 493 (641)
Q Consensus 417 ~~~~~~evv~k~--~~d~kgG~l~~~-~g~~~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~ 493 (641)
++++.+-+.+-. .+...||++... +|+. .++.+-++... .. ..|++-..++-+.+.+.+++..
T Consensus 141 ~a~~tl~~~~v~~~~~~~~g~vv~~~~~g~v--~~~~~~~~~~~--~~-~~~~Giyi~~~~~l~~~l~~~~--------- 206 (369)
T TIGR02092 141 GKDITVVYKKVKPADASEYDTILRFDESGKV--KSIGQNLNPEE--EE-NISLDIYIVSTDLLIELLYECI--------- 206 (369)
T ss_pred CCCEEEEEEecCHHHccccCcEEEEcCCCCE--EeccccCCCCC--cc-eeeeeEEEEEHHHHHHHHHHHh---------
Confidence 888755554432 334456766554 4533 33322111110 11 2377777777666666554310
Q ss_pred cccCCCCchhhhHhhhhHhhcC-CC--ceEEEEeccccccccCCchhhhhhhhhccc
Q 006541 494 KEVNDDQIISRGTAADSAIQFF-DH--TIGINVAQSRYLPVNSTSDLLLLQSDLYTA 547 (641)
Q Consensus 494 K~v~~~~~~qlE~~i~d~i~~f-~~--~~~i~V~R~rF~PvKn~~dll~~~sd~y~~ 547 (641)
+... ...+.|+++.. ++ ..++..+ ..|.-+.+..|++.+..|+...
T Consensus 207 ---~~~~----~~~~~d~i~~~~~~~~v~~~~~~-g~w~dIgt~~~l~~a~~~~l~~ 255 (369)
T TIGR02092 207 ---QRGK----LTSLEELIRENLKELNINAYEYT-GYLANINSVKSYYKANMDLLDP 255 (369)
T ss_pred ---hcCc----cccHHHHHHHHhccCcEEEEecC-CceeEcCCHHHHHHHHHHHhCC
Confidence 0000 01222444322 22 2233222 2467888888998888776644
No 40
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.23 E-value=0.00024 Score=80.22 Aligned_cols=174 Identities=14% Similarity=0.118 Sum_probs=101.1
Q ss_pred CcEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceE
Q 006541 261 DKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDI 340 (641)
Q Consensus 261 ~k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v 340 (641)
.++.+|.||||.|||||...||.++|+. |+++++..++++.+ .|+. .+++-+.. ..+...++++. .+ +
T Consensus 6 ~~~~avILAaG~gtRl~~~~pK~llpi~-gkpli~~~l~~l~~----~gi~-~ivvv~~~-~~~~i~~~~~~---~~--i 73 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKSALPKVLHPVA-GRPMVAWAVKAARD----LGAR-KIVVVTGH-GAEQVEAALQG---SG--V 73 (481)
T ss_pred CCceEEEECCCCCCcCCCCCCceecEEC-CeeHHHHHHHHHHh----CCCC-eEEEEeCC-CHHHHHHHhcc---CC--c
Confidence 3678899999999999988899999995 67999988887764 2332 45565654 34566666642 22 2
Q ss_pred EEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcc-cccccCH-HHHHHHhhcCC
Q 006541 341 HSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVADP-KIFNHLIQNQI 418 (641)
Q Consensus 341 ~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~~~~~~~ 418 (641)
.+..|. .|.|-|..++.++. .+ ..+-+.++|.+.|+ +....+. .++..+.+++.
T Consensus 74 ~~v~~~-----------------~~~Gt~~al~~~~~------~l-~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~ 129 (481)
T PRK14358 74 AFARQE-----------------QQLGTGDAFLSGAS------AL-TEGDADILVLYGDTPLLRPDTLRALVADHRAQGS 129 (481)
T ss_pred EEecCC-----------------CcCCcHHHHHHHHH------Hh-hCCCCcEEEEeCCeeccCHHHHHHHHHHHHhcCC
Confidence 222121 24455523555542 22 22223367789999 5433333 44666667777
Q ss_pred ceEEEEeccCCCCCcceEEEee-CCeEEEEEecCCCccccCC-CCceeeeeceeeeH
Q 006541 419 EYCMEVAPVPSIDLRNSLINLR-PGKFQLVDITQNPTKQSGG-KFKFINTRSMWVNL 473 (641)
Q Consensus 419 ~~~~evv~k~~~d~kgG~l~~~-~g~~~lvEysq~~~~~~~~-~~~~fNtnni~~~l 473 (641)
++.+-+.+... ..+-|++... +|+ +.++.|=|+....+ ....+|++-..++-
T Consensus 130 ~~ti~~~~~~~-~~~yG~v~~d~~g~--v~~~~Ek~~~~~~~~~~~~~n~Giyi~~~ 183 (481)
T PRK14358 130 AMTILTGELPD-ATGYGRIVRGADGA--VERIVEQKDATDAEKAIGEFNSGVYVFDA 183 (481)
T ss_pred eEEEEEEEcCC-CCCceEEEECCCCC--EEEEEECCCCChhHhhCCeEEEEEEEEch
Confidence 76554443333 3346887764 554 33444333321111 12246888888883
No 41
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.22 E-value=0.00044 Score=76.94 Aligned_cols=202 Identities=12% Similarity=0.135 Sum_probs=114.7
Q ss_pred CcEEEEEEcCCCCCCCC---CCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCC
Q 006541 261 DKLVVVKFNGALGTNMG---FSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSK 337 (641)
Q Consensus 261 ~k~avv~LaGGlGTrlG---~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg 337 (641)
.++.+|.||||.||||. .+.||.++|+....+++|+.++++.. .|+. .++|.++. ..+...++|.+...++
T Consensus 2 ~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~----~Gi~-~vivv~~~-~~~~i~~~l~~~~~~~ 75 (429)
T PRK02862 2 KRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCIN----SGIN-KIYVLTQF-NSASLNRHISQTYNFD 75 (429)
T ss_pred CcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHH----CCCC-EEEEEecC-CHHHHHHHHhcCcCcc
Confidence 37789999999999997 48899999997444999998887765 3322 35677765 5678888887532221
Q ss_pred ceEEEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccCH-HHHHHHhhc
Q 006541 338 VDIHSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADP-KIFNHLIQN 416 (641)
Q Consensus 338 ~~v~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~Dp-~~lg~~~~~ 416 (641)
. +..+.+..+.+. ......-.+-|.|..++.++ +.+....-++++|.+.|++.. .|. .++.++.++
T Consensus 76 ~----~~~g~~~i~~~~--~~~~~~~~~lGTa~al~~a~------~~l~~~~~~~~lVl~gD~l~~-~dl~~ll~~h~~~ 142 (429)
T PRK02862 76 G----FSGGFVEVLAAQ--QTPENPSWFQGTADAVRKYL------WHFQEWDVDEYLILSGDQLYR-MDYRLFVQHHRET 142 (429)
T ss_pred c----cCCCEEEEeCCc--ccCCCCccccCcHHHHHHHH------HHHHhcCCCEEEEecCCEEEe-CCHHHHHHHHHHc
Confidence 0 000000000000 00000012257761344443 233333346889999999653 443 567777788
Q ss_pred CCceEEEEeccCCC-CCcceEEEee-CCeE-EEEEecCCCcc---------------ccCCCCceeeeeceeeeHHHHHH
Q 006541 417 QIEYCMEVAPVPSI-DLRNSLINLR-PGKF-QLVDITQNPTK---------------QSGGKFKFINTRSMWVNLRAIKR 478 (641)
Q Consensus 417 ~~~~~~evv~k~~~-d~kgG~l~~~-~g~~-~lvEysq~~~~---------------~~~~~~~~fNtnni~~~l~~l~~ 478 (641)
++++.+-+.+.... ...-|++... +|+. .++|-.+.+.. .....-.+.|++-..++-+.|.+
T Consensus 143 ~a~~tl~~~~~~~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~ 222 (429)
T PRK02862 143 GADITLAVLPVDEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFD 222 (429)
T ss_pred CCCEEEEEEecChhhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHH
Confidence 88876655433222 2235776554 4543 34454321110 00001124588888888888877
Q ss_pred Hhh
Q 006541 479 LID 481 (641)
Q Consensus 479 ~~~ 481 (641)
+++
T Consensus 223 ~l~ 225 (429)
T PRK02862 223 LLN 225 (429)
T ss_pred HHH
Confidence 765
No 42
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.16 E-value=0.00067 Score=75.91 Aligned_cols=230 Identities=12% Similarity=0.061 Sum_probs=129.6
Q ss_pred CcEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceE
Q 006541 261 DKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDI 340 (641)
Q Consensus 261 ~k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v 340 (641)
.++..|.||||.||||+...||.++|+. |+++++..++++.+ .|. -++++.+++. .+...+++.+.. .+
T Consensus 2 ~~~~avIlAaG~g~Rl~~~~pK~l~pi~-g~pli~~~l~~l~~----~gi-~~iiiv~~~~-~~~i~~~~~~~~----~i 70 (459)
T PRK14355 2 NNLAAIILAAGKGTRMKSDLVKVMHPLA-GRPMVSWPVAAARE----AGA-GRIVLVVGHQ-AEKVREHFAGDG----DV 70 (459)
T ss_pred CcceEEEEcCCCCcccCCCCCceeceeC-CccHHHHHHHHHHh----cCC-CeEEEEECCC-HHHHHHHhccCC----ce
Confidence 3567899999999999988999999996 56999998887764 232 2567777755 456666665421 22
Q ss_pred EEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcc-cccccC-HHHHHHHhhcCC
Q 006541 341 HSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVAD-PKIFNHLIQNQI 418 (641)
Q Consensus 341 ~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~D-p~~lg~~~~~~~ 418 (641)
.+..|. .|-|.|..++.++. .+ ++.-+++++.+.|+ +....| -.++-++..+++
T Consensus 71 ~~~~~~-----------------~~~Gt~~al~~a~~------~l-~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~ 126 (459)
T PRK14355 71 SFALQE-----------------EQLGTGHAVACAAP------AL-DGFSGTVLILCGDVPLLRAETLQGMLAAHRATGA 126 (459)
T ss_pred EEEecC-----------------CCCCHHHHHHHHHH------Hh-hccCCcEEEEECCccCcCHHHHHHHHHHHHhcCC
Confidence 222221 23466613444442 22 22247899999999 544444 345666666677
Q ss_pred ceEEEEeccCCCCCcceEEEee-CCeEEEEEecCCCccc-cCCCCceeeeeceeeeHHHHHHHhhcCCCccceeeccccc
Q 006541 419 EYCMEVAPVPSIDLRNSLINLR-PGKFQLVDITQNPTKQ-SGGKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEV 496 (641)
Q Consensus 419 ~~~~evv~k~~~d~kgG~l~~~-~g~~~lvEysq~~~~~-~~~~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v 496 (641)
+..+-+.+...+. .-|.+... +|+ ++++.+-|+.. .+......|++-.+++-+++.+.++.- +..
T Consensus 127 ~~~v~~~~~~~~~-~~g~v~~d~~g~--v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~----------~~~ 193 (459)
T PRK14355 127 AVTVLTARLENPF-GYGRIVRDADGR--VLRIVEEKDATPEERSIREVNSGIYCVEAAFLFDAIGRL----------GND 193 (459)
T ss_pred cEEEEEEEcCCCC-cCCEEEEcCCCC--EEEEEEcCCCChhHhhccEEEEEEEEEeHHHHHHHHHHc----------Ccc
Confidence 7666555554443 34555443 444 44444333211 111223457887788877666655321 000
Q ss_pred CCCCchhhhHhhhhHhhcC--C--CceEEEEec-cccccccCCchhhhhhh
Q 006541 497 NDDQIISRGTAADSAIQFF--D--HTIGINVAQ-SRYLPVNSTSDLLLLQS 542 (641)
Q Consensus 497 ~~~~~~qlE~~i~d~i~~f--~--~~~~i~V~R-~rF~PvKn~~dll~~~s 542 (641)
+.. -|..+.|+++.+ + ...+++.+. .++.-+-+.+|++.+++
T Consensus 194 ~~~----~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~ 240 (459)
T PRK14355 194 NAQ----GEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAAR 240 (459)
T ss_pred ccC----CceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHH
Confidence 001 122334555544 2 233444432 24677878888766543
No 43
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.15 E-value=0.00065 Score=75.78 Aligned_cols=252 Identities=10% Similarity=0.077 Sum_probs=144.2
Q ss_pred CcEEEEEEcCCCCCCCC---CCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCC
Q 006541 261 DKLVVVKFNGALGTNMG---FSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSK 337 (641)
Q Consensus 261 ~k~avv~LaGGlGTrlG---~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg 337 (641)
.++.+|.||||.||||. .+.||.++|+.....++|+.++.+.. .|.. -++|.+.. ..+...++|++...++
T Consensus 2 ~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~----~Gi~-~i~iv~~~-~~~~i~~~l~~~~~~~ 75 (436)
T PLN02241 2 KSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCIN----SGIN-KIYVLTQF-NSASLNRHLSRAYNFG 75 (436)
T ss_pred CceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHh----CCCC-EEEEEecc-CHHHHHHHHhccCCCC
Confidence 57889999999999997 68899999998667999998888764 3432 24556655 5577888888532233
Q ss_pred ceEEEEecCCccccccCCCCCCCccccCCCChhhHH-HHHHhcChhHHHHHcCceEEEEEcCcccccccCH-HHHHHHhh
Q 006541 338 VDIHSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVF-LSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADP-KIFNHLIQ 415 (641)
Q Consensus 338 ~~v~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~-~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~Dp-~~lg~~~~ 415 (641)
... -+.++.+..+.+.... ...-.|-|.| |-. .++. .+++...++-+++.+.+.|++. ..|. .++.++.+
T Consensus 76 ~~~-~~~~~~~~i~~~~q~~--~~~~~~lGt~-~al~~~~~---~~~~~~~~~~~~~lv~~gD~v~-~~dl~~ll~~h~~ 147 (436)
T PLN02241 76 NGG-NFGDGFVEVLAATQTP--GEKGWFQGTA-DAVRQFLW---LFEDAKNKNVEEVLILSGDHLY-RMDYMDFVQKHRE 147 (436)
T ss_pred CCc-ccCCCCEEEcCCcccC--CCCccccCcH-HHHHHHHH---HHHhcccCCCCEEEEecCCeEE-ccCHHHHHHHHHH
Confidence 211 1122211111111100 0112478887 544 4441 2332221235899999999974 4454 56778888
Q ss_pred cCCceEEEEecc--CCCCCcceEEEeeCCeEEEEEecCCCcccc------------------CCCCceeeeeceeeeHHH
Q 006541 416 NQIEYCMEVAPV--PSIDLRNSLINLRPGKFQLVDITQNPTKQS------------------GGKFKFINTRSMWVNLRA 475 (641)
Q Consensus 416 ~~~~~~~evv~k--~~~d~kgG~l~~~~g~~~lvEysq~~~~~~------------------~~~~~~fNtnni~~~l~~ 475 (641)
+++++.+-+.+- ..+ ..-|++... +.-+++++.+-|.... +.+-.+.|++-..++-+.
T Consensus 148 ~~a~~ti~~~~v~~~~~-~~ygvv~~d-~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~ 225 (436)
T PLN02241 148 SGADITIACLPVDESRA-SDFGLMKID-DTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDV 225 (436)
T ss_pred cCCCEEEEEEecchhhc-CcceEEEEC-CCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHH
Confidence 888865544322 222 456877663 2234566666554321 111134577777788777
Q ss_pred HHHHhhcCCCccceeecccccCCCCchhhhHhhhhHhhcCC----CceEEEEeccccccccCCchhhhhhhhhcc
Q 006541 476 IKRLIDTDELKVENFSSSKEVNDDQIISRGTAADSAIQFFD----HTIGINVAQSRYLPVNSTSDLLLLQSDLYT 546 (641)
Q Consensus 476 l~~~~~~~~~~lp~~~n~K~v~~~~~~qlE~~i~d~i~~f~----~~~~i~V~R~rF~PvKn~~dll~~~sd~y~ 546 (641)
+.+++++.. + +.. -+..|+++.+- +..++.++ ..+.-+-+..|++.++.|+-.
T Consensus 226 l~~ll~~~~---~---------~~~-----~~~~dil~~l~~~g~~v~~~~~~-gyw~dIg~~~~y~~a~~~~l~ 282 (436)
T PLN02241 226 LLKLLRWRF---P---------TAN-----DFGSEIIPGAIKEGYNVQAYLFD-GYWEDIGTIKSFYEANLALTK 282 (436)
T ss_pred HHHHHHhhc---c---------ccc-----chhHHHHHHHhhcCCeEEEEeeC-CEEEECCCHHHHHHHHHHHhc
Confidence 776654311 1 000 12345554442 23344443 356778888888877777654
No 44
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=98.12 E-value=0.00026 Score=70.87 Aligned_cols=224 Identities=14% Similarity=0.094 Sum_probs=126.0
Q ss_pred EEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEEEEe
Q 006541 265 VVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLS 344 (641)
Q Consensus 265 vv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~~f~ 344 (641)
+|.||||.||||+...||.++|+. |+++++..++++.. .|+. ..+|.++.. ++...+++.+ +++ .++.
T Consensus 1 aiIlaaG~g~R~~~~~pK~l~~v~-gkpli~~~i~~l~~----~~i~-~i~iv~~~~-~~~i~~~~~~---~~~--~~~~ 68 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKVLHPLA-GKPMLEHVLDAARA----LGPD-RIVVVVGHG-AEQVKKALAN---PNV--EFVL 68 (229)
T ss_pred CEEEeCCCCccCCCCCChhcceeC-CccHHHHHHHHHHh----CCCC-eEEEEECCC-HHHHHHHhCC---CCc--EEEE
Confidence 478999999999988899999996 67999987777654 3432 556666655 6677777664 333 2333
Q ss_pred cCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcc-cccccC-HHHHHHHhhcCCceEE
Q 006541 345 LSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVAD-PKIFNHLIQNQIEYCM 422 (641)
Q Consensus 345 Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~D-p~~lg~~~~~~~~~~~ 422 (641)
|. .+.|.+..++.++.. ++++.+++++.+.|+ +...-| -.++-.+.+.+++.++
T Consensus 69 ~~-----------------~~~g~~~ai~~a~~~-------~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~ 124 (229)
T cd02540 69 QE-----------------EQLGTGHAVKQALPA-------LKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTV 124 (229)
T ss_pred CC-----------------CCCCCHHHHHHHHHh-------hccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEE
Confidence 21 124555346666632 222468899999999 432211 1234444555677777
Q ss_pred EEeccCCCCCcceEEEee-CCeE-EEEEecCCCccccCCCCceeeeeceeeeHHHHHHHhhcCCCccceeecccccCCCC
Q 006541 423 EVAPVPSIDLRNSLINLR-PGKF-QLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDDQ 500 (641)
Q Consensus 423 evv~k~~~d~kgG~l~~~-~g~~-~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~~~~ 500 (641)
-+++...+ ..-|.+... +|+. .+.|-.+..+.. ......|++-.+++-+.+.+.++... .. +...
T Consensus 125 ~~~~~~~p-~~~~~~~~~~~~~v~~~~ek~~~~~~~--~~~~~~~~giy~~~~~~~~~~l~~~~-------~~---~~~~ 191 (229)
T cd02540 125 LTAELEDP-TGYGRIIRDGNGKVLRIVEEKDATEEE--KAIREVNAGIYAFDAEFLFEALPKLT-------NN---NAQG 191 (229)
T ss_pred EEEEcCCC-CCccEEEEcCCCCEEEEEECCCCChHH--HhhceEEeEEEEEEHHHHHHHHHHcc-------cc---cCCC
Confidence 76665554 345654443 4652 344432222111 11123477778888776666554210 00 0011
Q ss_pred chhhhHhhhhHhhcCCCceEEEEe-ccccccccCCchh
Q 006541 501 IISRGTAADSAIQFFDHTIGINVA-QSRYLPVNSTSDL 537 (641)
Q Consensus 501 ~~qlE~~i~d~i~~f~~~~~i~V~-R~rF~PvKn~~dl 537 (641)
..-+.-++..+++.-.+..+++++ -.+|-++-+.+||
T Consensus 192 ~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 192 EYYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred cEEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 222444444444432345566665 5688888777664
No 45
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=98.11 E-value=3.8e-05 Score=77.91 Aligned_cols=231 Identities=15% Similarity=0.254 Sum_probs=141.5
Q ss_pred EEEcCCCCCCCC---CCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEEE
Q 006541 266 VKFNGALGTNMG---FSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHS 342 (641)
Q Consensus 266 v~LaGGlGTrlG---~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~~ 342 (641)
|.||||.||||. .+.||.++|+....++++..++++.. .|..=..+|. .....+...+++++...+++++.+
T Consensus 3 vIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~----~g~~~ii~V~-~~~~~~~i~~~~~~~~~~~~~i~~ 77 (248)
T PF00483_consen 3 VILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLAN----AGIKEIIVVV-NGYKEEQIEEHLGSGYKFGVKIEY 77 (248)
T ss_dssp EEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHH----TTCSEEEEEE-ETTTHHHHHHHHTTSGGGTEEEEE
T ss_pred EEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcc----cCCceEEEEE-eeccccccccccccccccccccee
Confidence 667999999996 78899999998666999988888875 4444334444 444557788999987777877666
Q ss_pred EecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcC-ceEEEEEcCcccccccCHHHHHHHhhcCCc--
Q 006541 343 LSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQG-KEYALVVDSDNVAAVADPKIFNHLIQNQIE-- 419 (641)
Q Consensus 343 f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G-~eyi~v~nvDNL~~~~Dp~~lg~~~~~~~~-- 419 (641)
..|.. |.|.|..++.++ +.+.... -+++.|.+.|++...-=..++-.+.+++.+
T Consensus 78 i~~~~-----------------~~Gta~al~~a~------~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~ 134 (248)
T PF00483_consen 78 IVQPE-----------------PLGTAGALLQAL------DFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGT 134 (248)
T ss_dssp EEESS-----------------SSCHHHHHHHTH------HHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCES
T ss_pred eeccc-----------------ccchhHHHHHHH------HHhhhccccceEEEEeccccccchhhhHHHhhhccccccc
Confidence 65532 126662233333 2222222 357999999996655225678888888884
Q ss_pred eEEEEeccCCCCCcceEEEeeC-CeEEEEEecCCCccccCCCCceeeeeceeeeHHHHHHHhhcCCCccceeecccccCC
Q 006541 420 YCMEVAPVPSIDLRNSLINLRP-GKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVND 498 (641)
Q Consensus 420 ~~~evv~k~~~d~kgG~l~~~~-g~~~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~~ 498 (641)
+.+..++... ..+-|++...+ | .++++-|=|..... ..+.|++..+++=+.+..+++. .
T Consensus 135 ~~~~~~~~~~-~~~~g~v~~d~~~--~V~~~~EKP~~~~~--~~~~~~G~Y~~~~~~~~~~~~~--~------------- 194 (248)
T PF00483_consen 135 VTLLVVPVED-PSRYGVVEVDEDG--RVIRIVEKPDNPNA--SNLINTGIYIFKPEIFDFLLEM--I------------- 194 (248)
T ss_dssp EEEEEEESSG-GGGSEEEEEETTS--EEEEEEESCSSHSH--SSEEEEEEEEEETHHHHHHHHH--H-------------
T ss_pred cccccccccc-cccceeeeeccce--eEEEEeccCccccc--ceeccCceEEEcchHHHHHhhh--h-------------
Confidence 4555555443 45567666553 6 44454444443220 2356888888887666665430 0
Q ss_pred CCchhhhHhhhhHhhcC----CCceEEEEecc-ccccccCCchhhhhhhhh
Q 006541 499 DQIISRGTAADSAIQFF----DHTIGINVAQS-RYLPVNSTSDLLLLQSDL 544 (641)
Q Consensus 499 ~~~~qlE~~i~d~i~~f----~~~~~i~V~R~-rF~PvKn~~dll~~~sd~ 544 (641)
.+.-+-|-++.|+++.+ ....++..+.. .|.-|.+..|++.+..++
T Consensus 195 ~~~~~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~ 245 (248)
T PF00483_consen 195 KENARGEDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDL 245 (248)
T ss_dssp HTCTTSSHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHH
T ss_pred hccchhhhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHH
Confidence 01112334455555444 22233343444 599999999988776654
No 46
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=98.04 E-value=0.00029 Score=69.65 Aligned_cols=173 Identities=16% Similarity=0.223 Sum_probs=109.6
Q ss_pred EEEEcCCCCCCCC---CCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEE
Q 006541 265 VVKFNGALGTNMG---FSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIH 341 (641)
Q Consensus 265 vv~LaGGlGTrlG---~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~ 341 (641)
+|+||||.||||+ ...||.++|+. |+++++..++++... |+ -.++|.+.. ..+...+++.+...+++.+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~-g~pli~~~l~~l~~~----g~-~~i~vv~~~-~~~~i~~~~~~~~~~~~~i~ 73 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIA-GKPILEYIIERLARA----GI-DEIILVVGY-LGEQIEEYFGDGSKFGVNIE 73 (217)
T ss_pred CEEecCCccccccccccCCCccccEEC-CeeHHHHHHHHHHHC----CC-CEEEEEecc-CHHHHHHHHcChhhcCceEE
Confidence 3789999999997 46899999995 579999988887652 31 235666665 34677778776554565544
Q ss_pred EEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccCHHHHHHHhhcCCceE
Q 006541 342 SLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADPKIFNHLIQNQIEYC 421 (641)
Q Consensus 342 ~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~~~~~~ 421 (641)
+..|. .|.|.+..++.++. .+ .-+++.|.+.|++...-.-.++.++..++++..
T Consensus 74 ~~~~~-----------------~~~g~~~al~~~~~------~~---~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~ 127 (217)
T cd04181 74 YVVQE-----------------EPLGTAGAVRNAED------FL---GDDDFLVVNGDVLTDLDLSELLRFHREKGADAT 127 (217)
T ss_pred EEeCC-----------------CCCccHHHHHHhhh------hc---CCCCEEEEECCeecCcCHHHHHHHHHhcCCCEE
Confidence 43221 23566524444442 22 457899999999644333445677778888887
Q ss_pred EEEeccCCCCCcceEEEeeC-CeEEEEEecCCCccccCCCCceeeeeceeeeHHHH
Q 006541 422 MEVAPVPSIDLRNSLINLRP-GKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAI 476 (641)
Q Consensus 422 ~evv~k~~~d~kgG~l~~~~-g~~~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l 476 (641)
+-+.+.. ....-|.+...+ | .++++.+-|.... -...+++-..++-+.+
T Consensus 128 ~~~~~~~-~~~~~~~v~~d~~~--~v~~~~ek~~~~~---~~~~~~Giy~~~~~~~ 177 (217)
T cd04181 128 IAVKEVE-DPSRYGVVELDDDG--RVTRFVEKPTLPE---SNLANAGIYIFEPEIL 177 (217)
T ss_pred EEEEEcC-CCCcceEEEEcCCC--cEEEEEECCCCCC---CCEEEEEEEEECHHHH
Confidence 7776554 444557665443 4 3455555443221 1245888888887655
No 47
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.03 E-value=0.00054 Score=76.15 Aligned_cols=176 Identities=14% Similarity=0.139 Sum_probs=108.7
Q ss_pred EEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEEEE
Q 006541 264 VVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHSL 343 (641)
Q Consensus 264 avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~~f 343 (641)
..|.||||.||||+...||.++|+. |+++++..++.+... +. ..+|-++.. .+...+++.. + +.++
T Consensus 2 ~avIlA~G~gtRl~~~~pK~l~~v~-gkpli~~~l~~l~~~----~~--~i~vv~~~~-~~~i~~~~~~----~--~~~~ 67 (448)
T PRK14357 2 RALVLAAGKGTRMKSKIPKVLHKIS-GKPMINWVIDTAKKV----AQ--KVGVVLGHE-AELVKKLLPE----W--VKIF 67 (448)
T ss_pred eEEEECCCCCccCCCCCCceeeEEC-CeeHHHHHHHHHHhc----CC--cEEEEeCCC-HHHHHHhccc----c--cEEE
Confidence 3588999999999988999999996 679999988877652 22 345555543 2444444432 2 2223
Q ss_pred ecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcc-cccccC-HHHHHHHhhcCCceE
Q 006541 344 SLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVAD-PKIFNHLIQNQIEYC 421 (641)
Q Consensus 344 ~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~D-p~~lg~~~~~~~~~~ 421 (641)
.|. .|.|-+..++.++.. + . .-+++++.+.|+ +....| -.++.++.++++++.
T Consensus 68 ~~~-----------------~~~g~~~ai~~a~~~---l----~-~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~t 122 (448)
T PRK14357 68 LQE-----------------EQLGTAHAVMCARDF---I----E-PGDDLLILYGDVPLISENTLKRLIEEHNRKGADVT 122 (448)
T ss_pred ecC-----------------CCCChHHHHHHHHHh---c----C-cCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEE
Confidence 331 123544145555532 1 1 147899999999 544444 235666767788877
Q ss_pred EEEeccCCCCCcceEEEeeCCeEEEEEecCCCccccCCCCceeeeeceeeeHHHHHHHhh
Q 006541 422 MEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLID 481 (641)
Q Consensus 422 ~evv~k~~~d~kgG~l~~~~g~~~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~~~ 481 (641)
+-+++...+ ..-|.+...+|+...+|...-+.... .....|++-.+++-+.+.++++
T Consensus 123 i~~~~~~~~-~~~g~v~~d~g~v~~~e~~~~~~~~~--~~~~~~~GiYv~~~~~l~~~~~ 179 (448)
T PRK14357 123 ILVADLEDP-TGYGRIIRDGGKYRIVEDKDAPEEEK--KIKEINTGIYVFSGDFLLEVLP 179 (448)
T ss_pred EEEEEcCCC-CCcEEEEEcCCeEEEEECCCCChHHh--cCcEEEeEEEEEEHHHHHHHHH
Confidence 766655444 34576665578777777543222111 1224588888999877777654
No 48
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=97.95 E-value=0.0022 Score=71.13 Aligned_cols=174 Identities=20% Similarity=0.180 Sum_probs=98.0
Q ss_pred EEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEEEEe
Q 006541 265 VVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLS 344 (641)
Q Consensus 265 vv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~~f~ 344 (641)
.|.||||.|||||.+.||.++|+. |+++++..++++.. .|. -..++.++.. .+.+.+++.++ ++ .++.
T Consensus 3 aiIlAaG~g~R~~~~~pK~l~~i~-gkpli~~~l~~l~~----~g~-~~iiiv~~~~-~~~i~~~~~~~---~i--~~~~ 70 (451)
T TIGR01173 3 VVILAAGKGTRMKSDLPKVLHPLA-GKPMLEHVIDAARA----LGP-QKIHVVYGHG-AEQVRKALANR---DV--NWVL 70 (451)
T ss_pred EEEEcCCCCcccCCCCchhhceeC-CccHHHHHHHHHHh----CCC-CeEEEEECCC-HHHHHHHhcCC---Cc--EEEE
Confidence 578999999999988999999995 67999988887764 333 2567777765 56677777653 22 2222
Q ss_pred cCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcc-cccccCHHHHHHHhhc--CCceE
Q 006541 345 LSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVADPKIFNHLIQN--QIEYC 421 (641)
Q Consensus 345 Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~Dp~~lg~~~~~--~~~~~ 421 (641)
|. .|.|.+..++.++.. + + .-+++++.+.|. +- ++..+.-+++. ....+
T Consensus 71 ~~-----------------~~~G~~~ai~~a~~~------l-~-~~~~~lv~~~D~p~i---~~~~~~~l~~~~~~~~~~ 122 (451)
T TIGR01173 71 QA-----------------EQLGTGHAVLQALPF------L-P-DDGDVLVLYGDVPLI---SAETLERLLEAHRQNGIT 122 (451)
T ss_pred cC-----------------CCCchHHHHHHHHHh------c-C-CCCcEEEEECCcCCc---CHHHHHHHHHHHhhCCEE
Confidence 21 122454135555432 1 1 126889999998 42 33333333321 11333
Q ss_pred EEEeccCCCCCcceEEEee-CCeEEEEEecCCCcccc-CCCCceeeeeceeeeHHHHHHHhh
Q 006541 422 MEVAPVPSIDLRNSLINLR-PGKFQLVDITQNPTKQS-GGKFKFINTRSMWVNLRAIKRLID 481 (641)
Q Consensus 422 ~evv~k~~~d~kgG~l~~~-~g~~~lvEysq~~~~~~-~~~~~~fNtnni~~~l~~l~~~~~ 481 (641)
+-+.+. .....-|.+... +|+ +.++.+=|+... +......|++..+++-+.|.+.++
T Consensus 123 ~~~~~~-~~~~~~g~v~~d~~g~--v~~~~ek~~~~~~~~~~~~~~~G~y~~~~~~l~~~l~ 181 (451)
T TIGR01173 123 LLTAKL-PDPTGYGRIIRENDGK--VTAIVEDKDANAEQKAIKEINTGVYVFDGAALKRWLP 181 (451)
T ss_pred EEEEec-CCCCCCCEEEEcCCCC--EEEEEEcCCCChHHhcCcEEEEEEEEEeHHHHHHHHH
Confidence 333333 223335666543 454 334433222111 101123478888899888766654
No 49
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=97.90 E-value=0.00073 Score=68.36 Aligned_cols=180 Identities=16% Similarity=0.189 Sum_probs=113.7
Q ss_pred EEEEcCCCCCCCCC---CCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcC-CCCceE
Q 006541 265 VVKFNGALGTNMGF---SGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYS-NSKVDI 340 (641)
Q Consensus 265 vv~LaGGlGTrlG~---~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~-~fg~~v 340 (641)
+|.||||.||||+- ..||.++|+. |+++++..++++... |.. ..+|.++. .++...+++.+.. .+|+++
T Consensus 3 ~iIlAaG~g~R~~~lt~~~pK~llpv~-g~pli~~~l~~l~~~----g~~-~v~iv~~~-~~~~~~~~l~~~~~~~~~~i 75 (233)
T cd06425 3 ALILVGGYGTRLRPLTLTVPKPLVEFC-NKPMIEHQIEALAKA----GVK-EIILAVNY-RPEDMVPFLKEYEKKLGIKI 75 (233)
T ss_pred EEEecCCCccccCccccCCCCccCeEC-CcchHHHHHHHHHHC----CCc-EEEEEeee-CHHHHHHHHhcccccCCeEE
Confidence 57899999999964 7899999996 569999888887762 322 35666665 4567888888642 345443
Q ss_pred EEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccCHHHHHHHhhcCCce
Q 006541 341 HSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADPKIFNHLIQNQIEY 420 (641)
Q Consensus 341 ~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~~~~~ 420 (641)
.... +..|-|-|..++.++. ++.+.-+-+.+.+.|++...--..++.++.+++++.
T Consensus 76 ~~~~-----------------~~~~~G~~~al~~a~~-------~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~ 131 (233)
T cd06425 76 TFSI-----------------ETEPLGTAGPLALARD-------LLGDDDEPFFVLNSDVICDFPLAELLDFHKKHGAEG 131 (233)
T ss_pred Eecc-----------------CCCCCccHHHHHHHHH-------HhccCCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCE
Confidence 2211 1125565523444432 222212235677899864422256888888889998
Q ss_pred EEEEeccCCCCCcceEEEeeCCeEEEEEecCCCccccCCCCceeeeeceeeeHHHHHHH
Q 006541 421 CMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRL 479 (641)
Q Consensus 421 ~~evv~k~~~d~kgG~l~~~~g~~~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~ 479 (641)
.+-+.+... ..+-|++...++.-+++++.+-|.+.. -.+.|++..+++-+.++.+
T Consensus 132 ~~~~~~~~~-~~~~g~v~~d~~~~~v~~~~ekp~~~~---~~~~~~Giyi~~~~~l~~l 186 (233)
T cd06425 132 TILVTKVED-PSKYGVVVHDENTGRIERFVEKPKVFV---GNKINAGIYILNPSVLDRI 186 (233)
T ss_pred EEEEEEcCC-ccccCeEEEcCCCCEEEEEEECCCCCC---CCEEEEEEEEECHHHHHhc
Confidence 887776544 356788766531225666665554332 2246889889998877554
No 50
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=97.89 E-value=0.00058 Score=69.40 Aligned_cols=226 Identities=12% Similarity=0.100 Sum_probs=127.2
Q ss_pred EEEEEcCCCCCCCCC---CCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceE
Q 006541 264 VVVKFNGALGTNMGF---SGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDI 340 (641)
Q Consensus 264 avv~LaGGlGTrlG~---~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v 340 (641)
-.|.||||.||||+- ..||.++|+. |+++++..++.+.. .|+. .+++.++..-.+...+++.....+++++
T Consensus 2 ~~iIlAaG~gtRl~plt~~~pK~llpv~-~~pli~~~l~~l~~----~gi~-~i~vv~~~~~~~~~~~~l~~~~~~~~~i 75 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQLLPVY-DKPMIYYPLSTLML----AGIR-EILIISTPEDLPLFKELLGDGSDLGIRI 75 (240)
T ss_pred eEEEEcCcCcccCCccccCCCceeeEEC-CEEhHHHHHHHHHH----CCCC-EEEEEeCcchHHHHHHHHhcccccCceE
Confidence 368899999999975 7899999998 89999988887764 2432 4666666555567788887666667664
Q ss_pred EEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccC-HHHHHHHhhcCCc
Q 006541 341 HSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVAD-PKIFNHLIQNQIE 419 (641)
Q Consensus 341 ~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~D-p~~lg~~~~~~~~ 419 (641)
.+-.| ..|-|.|..++.++. ++. + +..++.+.|++....| -.++-++.+++.+
T Consensus 76 ~~~~~-----------------~~~~G~~~al~~a~~-------~~~-~-~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~ 129 (240)
T cd02538 76 TYAVQ-----------------PKPGGLAQAFIIGEE-------FIG-D-DPVCLILGDNIFYGQGLSPILQRAAAQKEG 129 (240)
T ss_pred EEeeC-----------------CCCCCHHHHHHHHHH-------hcC-C-CCEEEEECCEEEccHHHHHHHHHHHhcCCC
Confidence 33221 123455523444442 121 2 4456668888432223 2345566666777
Q ss_pred eEEEEeccCCCCCcceEEEee-CCeEEEEEecCCCccccCCCCceeeeeceeeeHHHHHHHhhcCCCccceeecccccCC
Q 006541 420 YCMEVAPVPSIDLRNSLINLR-PGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVND 498 (641)
Q Consensus 420 ~~~evv~k~~~d~kgG~l~~~-~g~~~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~~ 498 (641)
..+-+.+-..+ +.-|++... +|+ ++++.+-|... .....|++-..++=+.+ +.++... +. +
T Consensus 130 ~~~~~~~~~~~-~~~g~v~~d~~g~--v~~~~ekp~~~---~~~~~~~Giyi~~~~~l-~~l~~~~-------~~----~ 191 (240)
T cd02538 130 ATVFGYEVNDP-ERYGVVEFDENGR--VLSIEEKPKKP---KSNYAVTGLYFYDNDVF-EIAKQLK-------PS----A 191 (240)
T ss_pred cEEEEEECCch-hcCceEEecCCCc--EEEEEECCCCC---CCCeEEEEEEEECHHHH-HHHHhcC-------CC----C
Confidence 66555444333 346776654 454 44554434321 11245888888886655 3333110 00 0
Q ss_pred CCchhhhHhhhhHhhcC-C-C-ceEEEEec-cccccccCCchhhhhhhh
Q 006541 499 DQIISRGTAADSAIQFF-D-H-TIGINVAQ-SRYLPVNSTSDLLLLQSD 543 (641)
Q Consensus 499 ~~~~qlE~~i~d~i~~f-~-~-~~~i~V~R-~rF~PvKn~~dll~~~sd 543 (641)
.. |..+.|+++.. + + ..+..++. ..|.-|-+.+|++.++..
T Consensus 192 ~~----~~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~ 236 (240)
T cd02538 192 RG----ELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNF 236 (240)
T ss_pred CC----eEEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHH
Confidence 01 11223444333 2 1 23344443 457777777777665543
No 51
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=97.87 E-value=0.00069 Score=67.83 Aligned_cols=173 Identities=17% Similarity=0.140 Sum_probs=105.8
Q ss_pred EEEEcCCCCCCCCC---CCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEE
Q 006541 265 VVKFNGALGTNMGF---SGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIH 341 (641)
Q Consensus 265 vv~LaGGlGTrlG~---~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~ 341 (641)
.|.||||.||||+- ..||.++|+. |++++|..++.+.+. | +.=+++......+...+++.. .++|+++.
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~llpi~-g~~li~~~l~~l~~~----g--i~~i~iv~~~~~~~i~~~~~~-~~~~~~i~ 73 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKPLVPVA-GKPLIDHALDRLAAA----G--IRRIVVNTHHLADQIEAHLGD-SRFGLRIT 73 (221)
T ss_pred EEEEcCCCCCccccccCCCCCceeeEC-CEEHHHHHHHHHHHC----C--CCEEEEEccCCHHHHHHHHhc-ccCCceEE
Confidence 47899999999964 7899999996 669999888887652 3 443444445667888888887 55676654
Q ss_pred EEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccC-HHHHHHHh--hcCC
Q 006541 342 SLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVAD-PKIFNHLI--QNQI 418 (641)
Q Consensus 342 ~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~D-p~~lg~~~--~~~~ 418 (641)
+..|.. .+-|.|..++.++.. +. -++++|.+.|++.. .| -.++-.+. +.++
T Consensus 74 ~~~~~~----------------~~~g~~~~l~~~~~~-------~~--~~~~lv~~~D~i~~-~~~~~~~~~~~~~~~~~ 127 (221)
T cd06422 74 ISDEPD----------------ELLETGGGIKKALPL-------LG--DEPFLVVNGDILWD-GDLAPLLLLHAWRMDAL 127 (221)
T ss_pred EecCCC----------------cccccHHHHHHHHHh-------cC--CCCEEEEeCCeeeC-CCHHHHHHHHHhccCCC
Confidence 432210 233444256666642 11 27899999999543 23 23455554 4566
Q ss_pred ceEEEEeccCCCCCcceEEEeeCCeEEEEEecCCCccccCCCCceeeeeceeeeHHHHHHH
Q 006541 419 EYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRL 479 (641)
Q Consensus 419 ~~~~evv~k~~~d~kgG~l~~~~g~~~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~ 479 (641)
.+++.+++...+ ..-|++...++. .+.++.+-|+. .+.|++-..++-+.+.++
T Consensus 128 ~~~~~~~~~~~~-~~~g~v~~d~~~-~v~~~~~~~~~------~~~~~Giyi~~~~~l~~l 180 (221)
T cd06422 128 LLLLPLVRNPGH-NGVGDFSLDADG-RLRRGGGGAVA------PFTFTGIQILSPELFAGI 180 (221)
T ss_pred ceEEEEEEcCCC-CCcceEEECCCC-cEeecccCCCC------ceEEEEEEEEcHHHHhhC
Confidence 666666554433 344666554322 34555443332 245777767775555443
No 52
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=97.86 E-value=0.00044 Score=72.42 Aligned_cols=186 Identities=15% Similarity=0.162 Sum_probs=114.5
Q ss_pred EEEEEcCCCCCCCC----CCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCce
Q 006541 264 VVVKFNGALGTNMG----FSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVD 339 (641)
Q Consensus 264 avv~LaGGlGTrlG----~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~ 339 (641)
-+|.||||.||||. ...||.++++..++|++|..++++..+. ++ =.++|.|+..-.+.+.+++++ .+..
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~---~~-~~i~vvt~~~~~~~v~~~l~~---~~~~ 74 (274)
T cd02509 2 YPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLV---PP-DRILVVTNEEYRFLVREQLPE---GLPE 74 (274)
T ss_pred EEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCC---CC-CcEEEEechHHHHHHHHHHhh---cCCC
Confidence 36889999999996 5789999999877999999999876532 11 267888887666667777765 1111
Q ss_pred EEEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHH-cCceEEEEEcCcccccccCH----HHHHHH-
Q 006541 340 IHSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLV-QGKEYALVVDSDNVAAVADP----KIFNHL- 413 (641)
Q Consensus 340 v~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~-~G~eyi~v~nvDNL~~~~Dp----~~lg~~- 413 (641)
+.+..| | .|.|.|..+..++. .+.+ .+-+++.|.+.|.+.. |. ..+-.+
T Consensus 75 ~~ii~e---p--------------~~~gTa~ai~~a~~------~~~~~~~~~~vlVl~~D~~i~--~~~~f~~~l~~~~ 129 (274)
T cd02509 75 ENIILE---P--------------EGRNTAPAIALAAL------YLAKRDPDAVLLVLPSDHLIE--DVEAFLKAVKKAV 129 (274)
T ss_pred ceEEEC---C--------------CCCCcHHHHHHHHH------HHHhcCCCCeEEEecchhccc--CHHHHHHHHHHHH
Confidence 212111 1 12344523444442 1222 2457999999998543 22 123222
Q ss_pred --hhcCCceEEEEeccCCCCCcceEEEeeCC----eEEEEEecCCCccccCC-----CCceeeeeceeeeHHHHHHHhhc
Q 006541 414 --IQNQIEYCMEVAPVPSIDLRNSLINLRPG----KFQLVDITQNPTKQSGG-----KFKFINTRSMWVNLRAIKRLIDT 482 (641)
Q Consensus 414 --~~~~~~~~~evv~k~~~d~kgG~l~~~~g----~~~lvEysq~~~~~~~~-----~~~~fNtnni~~~l~~l~~~~~~ 482 (641)
++.+..+.+-+.+. .+...-|.+...+. -..+.++.|=|+....+ .--+.|++-..++.+.+.+.+++
T Consensus 130 ~~~~~~~~vt~gi~p~-~~~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~~~wNsGiyi~~~~~l~~~l~~ 208 (274)
T cd02509 130 EAAEEGYLVTFGIKPT-RPETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEYLESGNYLWNSGIFLFRAKTFLEELKK 208 (274)
T ss_pred HHHHcCCEEEEEeeec-CCCCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHHhhcCCeEEECceeeeeHHHHHHHHHH
Confidence 22566666666664 55566788765422 23566666666643222 11146999999998888777764
No 53
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=97.82 E-value=0.00063 Score=68.29 Aligned_cols=158 Identities=15% Similarity=0.191 Sum_probs=97.1
Q ss_pred EEEEcCCCCCCCC---CCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCce--
Q 006541 265 VVKFNGALGTNMG---FSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVD-- 339 (641)
Q Consensus 265 vv~LaGGlGTrlG---~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~-- 339 (641)
+|.||||.||||+ ...||.++||. |++++|..++.+.+ .|.. -.+|.+.. ..+...++|++...++.+
T Consensus 3 aiIla~G~g~Rl~plt~~~pK~llpi~-g~piI~~~l~~l~~----~Gi~-~I~iv~~~-~~~~i~~~l~~~~~~~~~~~ 75 (217)
T cd04197 3 AVVLADSFNRRFRPLTKEKPRCLLPLA-NVPLIDYTLEFLAL----NGVE-EVFVFCCS-HSDQIKEYIEKSKWSKPKSS 75 (217)
T ss_pred EEEEcCCCcccccccccCCCceeeEEC-CEehHHHHHHHHHH----CCCC-eEEEEeCC-CHHHHHHHHhhccccccccC
Confidence 5889999999998 68899999997 56899988887765 3432 35666665 567899999986555432
Q ss_pred ---EEEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccCH-HHHHHHhh
Q 006541 340 ---IHSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADP-KIFNHLIQ 415 (641)
Q Consensus 340 ---v~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~Dp-~~lg~~~~ 415 (641)
+.+..| -.+.|-| +....+...+.+ .+++.+.+.|++.. .|. .++.++.+
T Consensus 76 ~~~i~~~~~-----------------~~~~~~~-~al~~~~~~~~~-------~~~flv~~gD~i~~-~dl~~~l~~h~~ 129 (217)
T cd04197 76 LMIVIIIMS-----------------EDCRSLG-DALRDLDAKGLI-------RGDFILVSGDVVSN-IDLKEILEEHKE 129 (217)
T ss_pred cceEEEEeC-----------------CCcCccc-hHHHHHhhcccc-------CCCEEEEeCCeeec-cCHHHHHHHHHH
Confidence 222111 0134456 666555443322 24567889999653 454 56787776
Q ss_pred c-----CCceEEEEeccCCCCC-----cceEEEeeCCeEEEEEecCCCcc
Q 006541 416 N-----QIEYCMEVAPVPSIDL-----RNSLINLRPGKFQLVDITQNPTK 455 (641)
Q Consensus 416 ~-----~~~~~~evv~k~~~d~-----kgG~l~~~~g~~~lvEysq~~~~ 455 (641)
+ ++++.+-+.+-..++. .-|++...+..-+++.+.+-|..
T Consensus 130 ~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~ 179 (217)
T cd04197 130 RRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGS 179 (217)
T ss_pred hhccccCceEEEEEEeCCCccccccCCCceEEEEcCCCCcEEEEecccCC
Confidence 3 6666554444333321 13565554332345566665543
No 54
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=97.78 E-value=0.002 Score=66.55 Aligned_cols=229 Identities=14% Similarity=0.119 Sum_probs=126.6
Q ss_pred EEEEcCCCCCCCCC---CCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCC--ce
Q 006541 265 VVKFNGALGTNMGF---SGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSK--VD 339 (641)
Q Consensus 265 vv~LaGGlGTrlG~---~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg--~~ 339 (641)
+|.||||.||||+- ..||.++||. |+++++..++.+.+ .| +.=++.......+...++|.+....+ ++
T Consensus 2 avilaaG~gtRl~~~t~~~pK~llpv~-g~pii~~~l~~l~~----~g--i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~ 74 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKPMVEIG-GKPILWHIMKIYSH----HG--INDFIICCGYKGYVIKEYFANYFLHMSDVT 74 (254)
T ss_pred EEEEcCccccccCccccCCCcceeEEC-CEEHHHHHHHHHHH----CC--CCEEEEEcCCCHHHHHHHHHhhhhcccCee
Confidence 46789999999954 3899999995 68899887776654 23 44333333345677888888755443 33
Q ss_pred EEEEecCCccccccCCCCC----CCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccCH-HHHHHHh
Q 006541 340 IHSLSLSQQPHEKSFEGHS----RKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADP-KIFNHLI 414 (641)
Q Consensus 340 v~~f~Q~~~P~~~~~~~~~----~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~Dp-~~lg~~~ 414 (641)
+.. +++...-..+. ..+ ...+-.|-|.|..++.++. .+ +-+++.+.+.|++.. .|. .++-++.
T Consensus 75 ~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~gt~~al~~~~~-------~i--~~e~flv~~gD~i~~-~dl~~~~~~h~ 142 (254)
T TIGR02623 75 FHM-ADNTMEVHHKR-VEPWRVTLVDTGESTQTGGRLKRVRE-------YL--DDEAFCFTYGDGVAD-IDIKALIAFHR 142 (254)
T ss_pred EEe-ccccccccccc-CCccceeeeecCCcCCcHHHHHHHHH-------hc--CCCeEEEEeCCeEec-CCHHHHHHHHH
Confidence 322 22222211100 000 0011246777723444432 12 135677999999643 343 5567777
Q ss_pred hcCCceEEEEeccCCCCCcceEEEeeCCeEEEEEecCCCccccCCCCceeeeeceeeeHHHHHHHhhcCCCccceeeccc
Q 006541 415 QNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSK 494 (641)
Q Consensus 415 ~~~~~~~~evv~k~~~d~kgG~l~~~~g~~~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K 494 (641)
+++++..+-+++ ....-|++...+|+ +.++.+-|... -...|++-..++-+.+ +.++...
T Consensus 143 ~~~~d~tl~~~~---~~~~yG~v~~d~~~--V~~~~Ekp~~~----~~~i~~Giyi~~~~il-~~l~~~~---------- 202 (254)
T TIGR02623 143 KHGKKATVTAVQ---PPGRFGALDLEGEQ--VTSFQEKPLGD----GGWINGGFFVLNPSVL-DLIDGDA---------- 202 (254)
T ss_pred HcCCCEEEEEec---CCCcccEEEECCCe--EEEEEeCCCCC----CCeEEEEEEEEcHHHH-hhccccC----------
Confidence 778887665542 22456887665563 45555544321 1245888888886655 3332110
Q ss_pred ccCCCCchhhhHhhhhHhhcC-C--CceEEEEeccccccccCCchhhhhhhh
Q 006541 495 EVNDDQIISRGTAADSAIQFF-D--HTIGINVAQSRYLPVNSTSDLLLLQSD 543 (641)
Q Consensus 495 ~v~~~~~~qlE~~i~d~i~~f-~--~~~~i~V~R~rF~PvKn~~dll~~~sd 543 (641)
. .+..|+++.. + ...+++.+ ..|..|.+..|+..++..
T Consensus 203 ------~----~~~~d~i~~l~~~~~v~~~~~~-g~w~dIgt~~~~~~~~~~ 243 (254)
T TIGR02623 203 ------T----VWEQEPLETLAQRGELSAYEHS-GFWQPMDTLRDKNYLEEL 243 (254)
T ss_pred ------c----hhhhhHHHHHHhCCCEEEEeCC-CEEecCCchHHHHHHHHH
Confidence 0 1223444333 2 23333332 458999999888655433
No 55
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=97.77 E-value=0.003 Score=68.20 Aligned_cols=241 Identities=14% Similarity=0.207 Sum_probs=127.1
Q ss_pred EEEcCCCCCCCC---CCCCCeeeecCCCC-ChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCC-Cc--
Q 006541 266 VKFNGALGTNMG---FSGPKSAIEVKNNL-TPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNS-KV-- 338 (641)
Q Consensus 266 v~LaGGlGTrlG---~~~pK~~l~v~~~~-tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~f-g~-- 338 (641)
|.||||.||||+ .+.||.++|+. |+ +++|..++.+.. .|.. ..+|.+.+.. +...++|++.-.+ +.
T Consensus 2 iILAaG~gtRl~plt~~~pK~llpv~-g~~pli~~~l~~l~~----~gi~-~i~iv~~~~~-~~i~~~~~~~~~~~~~~~ 74 (361)
T TIGR02091 2 MVLAGGRGSRLSPLTKRRAKPAVPFG-GKYRIIDFPLSNCIN----SGIR-RIGVLTQYKS-HSLNRHIQRGWDFDGFID 74 (361)
T ss_pred EEeCCCCCCccchhhhCCccccceec-ceeeEeeehhhhhhh----cCCc-eEEEEeccCh-HHHHHHHHhccCccCccC
Confidence 789999999997 36899999996 45 799988887765 2332 4566666544 5678888752111 10
Q ss_pred -eEEEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccCHHHHHHHhhcC
Q 006541 339 -DIHSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADPKIFNHLIQNQ 417 (641)
Q Consensus 339 -~v~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~~ 417 (641)
.+.. .|.. ........|-|.|..++.++. .+....-+++++.+.|++...-=..++-.+.+++
T Consensus 75 ~~~~~-~~~~---------~~~~~~~~~~Gt~~al~~a~~------~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~ 138 (361)
T TIGR02091 75 GFVTL-LPAQ---------QRESGTDWYQGTADAVYQNLD------LIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESG 138 (361)
T ss_pred CCEEE-eCCc---------ccCCCCccccCcHHHHHHHHH------HHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcC
Confidence 1111 1100 000112345677623444542 2222334788999999964321124455566666
Q ss_pred CceEEEEeccC-CCCCcceEEEee-CCeEEEEEecCCCccccCC----CCceeeeeceeeeHHHHHHHhhcCCCccceee
Q 006541 418 IEYCMEVAPVP-SIDLRNSLINLR-PGKFQLVDITQNPTKQSGG----KFKFINTRSMWVNLRAIKRLIDTDELKVENFS 491 (641)
Q Consensus 418 ~~~~~evv~k~-~~d~kgG~l~~~-~g~~~lvEysq~~~~~~~~----~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~ 491 (641)
.+..+-+.+.. ......|++... +|+ +.++.+-|...... ...+.|++-..++-+.+.+.++...-.-+
T Consensus 139 ~~~ti~~~~~~~~~~~~~g~v~~d~~~~--v~~~~ekp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~--- 213 (361)
T TIGR02091 139 ADVTIACIPVPRKEASRFGVMQVDEDGR--IVDFEEKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPE--- 213 (361)
T ss_pred CCEEEEEEecChHhcccccEEEECCCCC--EEEEEECCCCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcCC---
Confidence 65444333221 112345777654 344 44554433111110 11134888778887766555543110000
Q ss_pred cccccCCCCchhhhHhhhhHhhcC---CCceEEEEeccccccccCCchhhhhhhhhcc
Q 006541 492 SSKEVNDDQIISRGTAADSAIQFF---DHTIGINVAQSRYLPVNSTSDLLLLQSDLYT 546 (641)
Q Consensus 492 n~K~v~~~~~~qlE~~i~d~i~~f---~~~~~i~V~R~rF~PvKn~~dll~~~sd~y~ 546 (641)
... .+..|+++.+ .+..++.++ ..+.-|.+.+|++.+..|+..
T Consensus 214 --------~~~---~~~~d~l~~l~~~~~v~~~~~~-~~w~digt~~~~~~a~~~~l~ 259 (361)
T TIGR02091 214 --------SSH---DFGKDIIPRALEEGSVQAYLFS-GYWRDVGTIDSFWEANMDLVS 259 (361)
T ss_pred --------ccc---ccHHHHHHHHhhcCceEEEeeC-CEEEECCCHHHHHHHHHHHhC
Confidence 000 1112333222 234455554 467888888998887777654
No 56
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=97.68 E-value=0.0029 Score=65.07 Aligned_cols=179 Identities=12% Similarity=0.124 Sum_probs=107.2
Q ss_pred EEEcCC--CCCCCCC---CCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcC-CCCce
Q 006541 266 VKFNGA--LGTNMGF---SGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYS-NSKVD 339 (641)
Q Consensus 266 v~LaGG--lGTrlG~---~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~-~fg~~ 339 (641)
|.|||| .||||.- ..||.++|+. |++++|..++.+..+ .|+. -.+|.+.. -.+...+++.+.. .+|+.
T Consensus 2 iIla~G~~~GtRl~plt~~~PK~llpv~-g~plI~~~l~~l~~~---~gi~-~i~iv~~~-~~~~i~~~l~~~~~~~~~~ 75 (257)
T cd06428 2 VILVGGPQKGTRFRPLSLDVPKPLFPVA-GKPMIHHHIEACAKV---PDLK-EVLLIGFY-PESVFSDFISDAQQEFNVP 75 (257)
T ss_pred EEEccCCCCCcccCCccCCCCcccCeEC-CeeHHHHHHHHHHhc---CCCc-EEEEEecC-CHHHHHHHHHhcccccCce
Confidence 678888 8999975 8899999996 569999887777642 2332 23444444 5677888887643 45655
Q ss_pred EEEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccC-HHHHHHHhhcCC
Q 006541 340 IHSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVAD-PKIFNHLIQNQI 418 (641)
Q Consensus 340 v~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~D-p~~lg~~~~~~~ 418 (641)
+.+..| ..|-|-|..++.+. +.+....-++++|.+.|++.. .| -.++.++.++++
T Consensus 76 i~~~~~-----------------~~~~Gt~~al~~a~------~~l~~~~~~~~lv~~gD~~~~-~dl~~~~~~h~~~~~ 131 (257)
T cd06428 76 IRYLQE-----------------YKPLGTAGGLYHFR------DQILAGNPSAFFVLNADVCCD-FPLQELLEFHKKHGA 131 (257)
T ss_pred EEEecC-----------------CccCCcHHHHHHHH------HHhhccCCCCEEEEcCCeecC-CCHHHHHHHHHHcCC
Confidence 543322 11344451244333 222222357899999999743 34 356888888888
Q ss_pred ceEEEEeccC-CCCCcceEEEee--CCeEEEEEecCCCccccCCCCceeeeeceeeeHHHHHHH
Q 006541 419 EYCMEVAPVP-SIDLRNSLINLR--PGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRL 479 (641)
Q Consensus 419 ~~~~evv~k~-~~d~kgG~l~~~--~g~~~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~ 479 (641)
+..+-+.+.. .....-|++... +|+ +.++.+-|.+.. -...|++-.+++-+.+..+
T Consensus 132 ~~tl~~~~~~~~~~~~yg~v~~d~~~g~--v~~~~Ekp~~~~---~~~~~~Giyi~~~~~~~~i 190 (257)
T cd06428 132 SGTILGTEASREQASNYGCIVEDPSTGE--VLHYVEKPETFV---SDLINCGVYLFSPEIFDTI 190 (257)
T ss_pred CEEEEEEEccccccccccEEEEeCCCCe--EEEEEeCCCCcc---cceEEEEEEEECHHHHHHH
Confidence 8766554322 112344776654 354 344444343211 1245888888887766443
No 57
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=97.66 E-value=0.01 Score=60.35 Aligned_cols=228 Identities=11% Similarity=0.081 Sum_probs=127.7
Q ss_pred cEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEE
Q 006541 262 KLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIH 341 (641)
Q Consensus 262 k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~ 341 (641)
++++++||||.++||| +|.++++. |+++++..++++... + +.-++..+. ++.+.+++++ +|.++.
T Consensus 2 ~~~~iIlA~g~S~R~~---~K~Ll~i~-Gkpll~~~l~~l~~~----~--i~~ivvv~~--~~~i~~~~~~---~~~~v~ 66 (245)
T PRK05450 2 KFLIIIPARYASTRLP---GKPLADIG-GKPMIVRVYERASKA----G--ADRVVVATD--DERIADAVEA---FGGEVV 66 (245)
T ss_pred ceEEEEecCCCCCCCC---CCcccccC-CcCHHHHHHHHHHhc----C--CCeEEEECC--cHHHHHHHHH---cCCEEE
Confidence 5788999999999995 79999995 899999988887653 2 333333332 4677777765 344432
Q ss_pred EEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcc-cccccCH-HHHHHHhhcCCc
Q 006541 342 SLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVADP-KIFNHLIQNQIE 419 (641)
Q Consensus 342 ~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~~~~~~~~ 419 (641)
+..| ..+.|.+ .+..++.. +...+-+++++.+.|+ +...-+. .++..+.+++.+
T Consensus 67 ~~~~-----------------~~~~gt~-~~~~~~~~------~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~ 122 (245)
T PRK05450 67 MTSP-----------------DHPSGTD-RIAEAAAK------LGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEAD 122 (245)
T ss_pred ECCC-----------------cCCCchH-HHHHHHHh------cCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCC
Confidence 2111 1244555 54444322 1112347899999999 6533222 344444445667
Q ss_pred eEEEEeccC-----CCCCcceEEEeeCCeEEEEEecCCC--c-cccC----CCCceeeeeceeeeHHHHHHHhhcCCCcc
Q 006541 420 YCMEVAPVP-----SIDLRNSLINLRPGKFQLVDITQNP--T-KQSG----GKFKFINTRSMWVNLRAIKRLIDTDELKV 487 (641)
Q Consensus 420 ~~~evv~k~-----~~d~kgG~l~~~~g~~~lvEysq~~--~-~~~~----~~~~~fNtnni~~~l~~l~~~~~~~~~~l 487 (641)
+..-++++. .....+|+....+|+. +++.+-| + .+.. ..-.+-|++--.|+-+.++++.+....
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~v~~d~~g~v--~~~~e~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~-- 198 (245)
T PRK05450 123 MATLAVPIHDAEEAFNPNVVKVVLDADGRA--LYFSRAPIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPS-- 198 (245)
T ss_pred eEeeeeecCCHHHhcCcCCCEEEeCCCCcE--EEecCCCCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCCCC--
Confidence 776666663 2334467653345554 3444333 2 1111 012345888888888877776542100
Q ss_pred ceeecccccCCCCchhhhHhhhhHhhcCCCceEEEEeccccccccCCchhhhhhhh
Q 006541 488 ENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTSDLLLLQSD 543 (641)
Q Consensus 488 p~~~n~K~v~~~~~~qlE~~i~d~i~~f~~~~~i~V~R~rF~PvKn~~dll~~~sd 543 (641)
..+.....+++.+ +..-....++.++...|.-|-+.+|++.++..
T Consensus 199 -------~~~~~~~~~~~~~----~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~ 243 (245)
T PRK05450 199 -------PLEKIESLEQLRA----LENGYRIHVVVVEEAPSIGVDTPEDLERVRAL 243 (245)
T ss_pred -------ccccchhHHHHHH----HHCCCceEEEEeCCCCCCCcCCHHHHHHHHHH
Confidence 1111111222221 11111244565555678999999999887643
No 58
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=97.65 E-value=0.0028 Score=67.35 Aligned_cols=231 Identities=12% Similarity=0.116 Sum_probs=128.0
Q ss_pred cEEEEEEcCCCCCCCC---CCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcC----
Q 006541 262 KLVVVKFNGALGTNMG---FSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYS---- 334 (641)
Q Consensus 262 k~avv~LaGGlGTrlG---~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~---- 334 (641)
.+-+|.||||.||||. ...||.++||. |+++++..++++.. .|+. -++|.++. ..+...++|....
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV~-gkPiI~~vl~~l~~----~Gi~-~ivivv~~-~~~~i~~~~~~~~~~~~ 75 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIV-DKPMIQYIVDEIVA----AGIK-EIVLVTHA-SKNAVENHFDTSYELES 75 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCceeeEEC-CEEHHHHHHHHHHH----CCCC-EEEEEecC-ChHHHHHHHhchHHHHH
Confidence 4567999999999997 57799999995 68899998888875 3433 45666665 5567888885421
Q ss_pred ------------------CCCceEEEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEE
Q 006541 335 ------------------NSKVDIHSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVV 396 (641)
Q Consensus 335 ------------------~fg~~v~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~ 396 (641)
.+++++.+..| ..|-|.|..++.|+.. +. -+-.++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~q-----------------~~~lGtg~Av~~a~~~-------l~--~~~flvv 129 (297)
T TIGR01105 76 LLEQRVKRQLLAEVQSICPPGVTIMNVRQ-----------------AQPLGLGHSILCARPV-------VG--DNPFVVV 129 (297)
T ss_pred HHHHhcchhhhhhhhhcCCCCceEEEeeC-----------------CCcCchHHHHHHHHHH-------hC--CCCEEEE
Confidence 12222322222 2466777336666632 21 1334556
Q ss_pred cCcccccc-------cCH-HHHHHHhhcCCceEEEEeccCCCCCcceEEEee-----CCeE-EEEEecCCCccccCCCCc
Q 006541 397 DSDNVAAV-------ADP-KIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLR-----PGKF-QLVDITQNPTKQSGGKFK 462 (641)
Q Consensus 397 nvDNL~~~-------~Dp-~~lg~~~~~~~~~~~evv~k~~~d~kgG~l~~~-----~g~~-~lvEysq~~~~~~~~~~~ 462 (641)
+.|+|... .|. .++-++.+++... +-+++.......-|++... +|+. +++|+.|=|.........
T Consensus 130 ~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~~-~~~~~~~~~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~~~s~ 208 (297)
T TIGR01105 130 LPDIIIDDATADPLRYNLAAMIARFNETGRSQ-VLAKRMPGDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSD 208 (297)
T ss_pred ECCeeccccccccchhHHHHHHHHHHHhCCcE-EEEEEcCCCCccceEEEecccccCCCCeeeEeEEEECCCCcccCCcC
Confidence 68886421 121 3455555566554 3333332223567888762 4654 677777655322111234
Q ss_pred eeeeeceeeeHHHHHHHhhcCCCccceeecccccCCCCchhhhHhhhhHhhcCCCceEEEEeccccccccCCchhhhh
Q 006541 463 FINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTSDLLLL 540 (641)
Q Consensus 463 ~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~~~~~~qlE~~i~d~i~~f~~~~~i~V~R~rF~PvKn~~dll~~ 540 (641)
+.|++...++-+.+.. ++.. . | .+..-++|.-++...+.- ....++.++ ..|.=|=+..|++.+
T Consensus 209 ~~~~GiYi~~~~i~~~-l~~~--~-~--------~~~ge~~ltd~i~~l~~~-~~v~~~~~~-g~w~DiG~p~~~~~a 272 (297)
T TIGR01105 209 LMAVGRYVLSADIWAE-LERT--E-P--------GAWGRIQLTDAIAELAKK-QSVDAMLMT-GDSYDCGKKMGYMQA 272 (297)
T ss_pred EEEEEEEEECHHHHHH-HhcC--C-C--------CCCCeeeHHHHHHHHHhc-CCEEEEEec-cEEECCCCHHHHHHH
Confidence 5688888888664443 2210 0 1 112234554444433331 123344442 356666666666554
No 59
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=97.61 E-value=0.003 Score=66.72 Aligned_cols=231 Identities=14% Similarity=0.205 Sum_probs=133.7
Q ss_pred EEEEcCCCCCCCC---CCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEE
Q 006541 265 VVKFNGALGTNMG---FSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIH 341 (641)
Q Consensus 265 vv~LaGGlGTrlG---~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~ 341 (641)
.|.||||.||||. ...||.++||. |+++++..++.+.. .|++ .++|.+.....+..+++|.....+|+++.
T Consensus 2 aIILAgG~GtRL~plT~~~pK~Llpv~-gkPmI~~~L~~l~~----aGi~-~I~iv~~~~~~~~~~~~lg~g~~~g~~i~ 75 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQLLPIY-DKPMIYYPLSTLML----AGIR-DILIISTPQDTPRFQQLLGDGSQWGVNLS 75 (286)
T ss_pred EEEECCCCCccCCcccCCCCceeeEEC-CEEhHHHHHHHHHH----CCCC-EEEEEecCCcHHHHHHHhccccccCceEE
Confidence 4789999999996 48899999996 46999988887764 2332 35556666666777888877677888876
Q ss_pred EEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccC-HHHHHHHhhcCCce
Q 006541 342 SLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVAD-PKIFNHLIQNQIEY 420 (641)
Q Consensus 342 ~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~D-p~~lg~~~~~~~~~ 420 (641)
+..|. .|-|-|..++.++. ++. +=+++ +.+.||+-...| ..++-.+.+++.+.
T Consensus 76 ~~~q~-----------------~~~Gta~al~~a~~-------~l~-~~~~~-li~gD~i~~~~~l~~ll~~~~~~~~~~ 129 (286)
T TIGR01207 76 YAVQP-----------------SPDGLAQAFIIGED-------FIG-GDPSA-LVLGDNIFYGHDLSDLLKRAAARESGA 129 (286)
T ss_pred EEEcc-----------------CCCCHHHHHHHHHH-------HhC-CCCEE-EEECCEeccccCHHHHHHHHHhcCCCc
Confidence 65552 34566612333332 222 22344 557899433344 35567677777776
Q ss_pred EEEEeccCCCCCcceEEEee-CCeEEEEEecCCCccccCCCCceeeeeceeeeHHHHHHHhhcCCCccceeecccccCCC
Q 006541 421 CMEVAPVPSIDLRNSLINLR-PGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDD 499 (641)
Q Consensus 421 ~~evv~k~~~d~kgG~l~~~-~g~~~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~~~ 499 (641)
.+-+.+...+ +.-|++... +|+ ++++.|=|... +-.+.|++-.+++-+.+ +.+++ +. ++.
T Consensus 130 ti~~~~v~~p-~~yGvv~~d~~g~--V~~i~EKp~~~---~s~~~~~GiYi~~~~i~-~~l~~--~~----------~~~ 190 (286)
T TIGR01207 130 TVFAYQVSDP-ERYGVVEFDSNGR--AISIEEKPAQP---KSNYAVTGLYFYDNRVV-EIARQ--LK----------PSA 190 (286)
T ss_pred EEEEEEccCH-HHCceEEECCCCe--EEEEEECCCCC---CCCEEEEEEEEEchHHH-HHHhh--cC----------CCC
Confidence 5555544444 456887664 454 44444433211 22346888877876543 33321 00 000
Q ss_pred CchhhhHhhhhHhhcC--CCceEEEE-ecc-ccccccCCchhhhhhhhhccccc
Q 006541 500 QIISRGTAADSAIQFF--DHTIGINV-AQS-RYLPVNSTSDLLLLQSDLYTADE 549 (641)
Q Consensus 500 ~~~qlE~~i~d~i~~f--~~~~~i~V-~R~-rF~PvKn~~dll~~~sd~y~~~~ 549 (641)
+=|..+-|+++.. ++...+.+ .|- .|.-+-+.+|++.+...+=.+..
T Consensus 191 ---~ge~eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~~~~~ 241 (286)
T TIGR01207 191 ---RGELEITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQTIEK 241 (286)
T ss_pred ---CCcEeHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHHHHHHH
Confidence 1123334555443 22223333 343 48889888998877555544433
No 60
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=97.60 E-value=0.0036 Score=66.42 Aligned_cols=229 Identities=13% Similarity=0.176 Sum_probs=132.5
Q ss_pred cEEEEEEcCCCCCCCCC---CCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCc
Q 006541 262 KLVVVKFNGALGTNMGF---SGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKV 338 (641)
Q Consensus 262 k~avv~LaGGlGTrlG~---~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~ 338 (641)
..-.|.||||.||||.- ..||.++||. |+++++..++.+.. .|++ -.+|.+...-.+...++|...+.+|+
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~Llpv~-gkPmI~~~l~~l~~----aGi~-~I~ii~~~~~~~~~~~~l~~g~~~g~ 76 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQLLPIY-DKPMIYYPLSTLML----AGIR-DILIISTPQDTPRFQQLLGDGSQWGL 76 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCceEeEEC-CEEHHHHHHHHHHH----CCCC-EEEEEecCCchHHHHHHHcCccccCc
Confidence 46689999999999974 8899999996 46999988887764 3543 24445544444567788877667888
Q ss_pred eEEEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccCH-HHHHHHhhcC
Q 006541 339 DIHSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADP-KIFNHLIQNQ 417 (641)
Q Consensus 339 ~v~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~Dp-~~lg~~~~~~ 417 (641)
++.+..|. .|.|-| +-+..- .+++. +-++ ++.+.||+-...|. .++-.+.+++
T Consensus 77 ~i~y~~q~-----------------~~~Gta-~Al~~a------~~~i~-~~~~-~lv~gD~i~~~~~l~~ll~~~~~~~ 130 (292)
T PRK15480 77 NLQYKVQP-----------------SPDGLA-QAFIIG------EEFIG-GDDC-ALVLGDNIFYGHDLPKLMEAAVNKE 130 (292)
T ss_pred eeEEEECC-----------------CCCCHH-HHHHHH------HHHhC-CCCE-EEEECCeeeeccCHHHHHHHHHhCC
Confidence 77655452 266777 433221 22332 2244 44568884333443 5677777777
Q ss_pred CceEEEEeccCCCCCcceEEEee-CCeEEEEEecCCCccccCCCCceeeeeceeeeHHHHHHHhhcCCCccceeeccccc
Q 006541 418 IEYCMEVAPVPSIDLRNSLINLR-PGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEV 496 (641)
Q Consensus 418 ~~~~~evv~k~~~d~kgG~l~~~-~g~~~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v 496 (641)
.+..+-+++...+ +.-|++... +|+ ++++.|=|... +-.+.|++-.+++=+.++.+ +. +.
T Consensus 131 ~~~tv~~~~v~~p-~~yGvv~~d~~g~--v~~i~EKP~~p---~s~~a~~GiY~~~~~v~~~~-~~--~~---------- 191 (292)
T PRK15480 131 SGATVFAYHVNDP-ERYGVVEFDQNGT--AISLEEKPLQP---KSNYAVTGLYFYDNDVVEMA-KN--LK---------- 191 (292)
T ss_pred CCeEEEEEEcCCc-ccCcEEEECCCCc--EEEEEECCCCC---CCCEEEEEEEEEChHHHHHH-hh--cC----------
Confidence 6666554444443 457887664 454 33444444311 22356888888876544332 21 00
Q ss_pred CCC-CchhhhHhhhhHhhcC--CCceEEE-Eecc-ccccccCCchhhhhhhhhc
Q 006541 497 NDD-QIISRGTAADSAIQFF--DHTIGIN-VAQS-RYLPVNSTSDLLLLQSDLY 545 (641)
Q Consensus 497 ~~~-~~~qlE~~i~d~i~~f--~~~~~i~-V~R~-rF~PvKn~~dll~~~sd~y 545 (641)
++. .-+.+ -|+++.. ++-.... ..|. .|.=+-+.+||+.+...+=
T Consensus 192 ~~~~ge~~i----td~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 192 PSARGELEI----TDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred CCCCCeeEh----HHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 010 11222 3555433 2323333 2343 6888888888877655543
No 61
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.58 E-value=0.016 Score=64.57 Aligned_cols=179 Identities=15% Similarity=0.145 Sum_probs=99.6
Q ss_pred EEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEEE
Q 006541 263 LVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHS 342 (641)
Q Consensus 263 ~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~~ 342 (641)
...|.||||.||||+...||.++|+. |+++++..++++.. .|.. ..++.++.. .+...+++.. + +.+
T Consensus 3 ~~avIlAaG~g~Rl~~~~pK~ll~i~-Gkpli~~~l~~l~~----~gi~-~iivvv~~~-~~~i~~~~~~----~--~~~ 69 (458)
T PRK14354 3 RYAIILAAGKGTRMKSKLPKVLHKVC-GKPMVEHVVDSVKK----AGID-KIVTVVGHG-AEEVKEVLGD----R--SEF 69 (458)
T ss_pred ceEEEEeCCCCcccCCCCChhhCEeC-CccHHHHHHHHHHh----CCCC-eEEEEeCCC-HHHHHHHhcC----C--cEE
Confidence 45788999999999988999999996 57999998888864 2332 355555543 3445555432 1 111
Q ss_pred EecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcc-cccccC-HHHHHHHhhcCCce
Q 006541 343 LSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVAD-PKIFNHLIQNQIEY 420 (641)
Q Consensus 343 f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~D-p~~lg~~~~~~~~~ 420 (641)
..| . .+.|.+..++.++.. + ++.-+++++.+.|+ +....| -.++-++.+.+++.
T Consensus 70 ~~~----------~-------~~~g~~~al~~a~~~------l-~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~ 125 (458)
T PRK14354 70 ALQ----------E-------EQLGTGHAVMQAEEF------L-ADKEGTTLVICGDTPLITAETLKNLIDFHEEHKAAA 125 (458)
T ss_pred EEc----------C-------CCCCHHHHHHHHHHH------h-cccCCeEEEEECCccccCHHHHHHHHHHHHhcCCce
Confidence 111 0 134544145555532 2 22237899999998 544333 23455554556665
Q ss_pred EEEEeccCCCCCcceEEEee-CCeE-EEEEecCCCccccCCCCceeeeeceeeeHHHHHHHhh
Q 006541 421 CMEVAPVPSIDLRNSLINLR-PGKF-QLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLID 481 (641)
Q Consensus 421 ~~evv~k~~~d~kgG~l~~~-~g~~-~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~~~ 481 (641)
.+-+.+...+ ..-|.+... +|++ .++|-....++.. .....|++..+++-++|.+.++
T Consensus 126 t~~~~~~~~~-~~~g~v~~d~~~~V~~~~ek~~~~~~~~--~~~~~~~Giy~f~~~~l~~~l~ 185 (458)
T PRK14354 126 TILTAIAENP-TGYGRIIRNENGEVEKIVEQKDATEEEK--QIKEINTGTYCFDNKALFEALK 185 (458)
T ss_pred EEEEEEcCCC-CCceEEEEcCCCCEEEEEECCCCChHHh--cCcEEEEEEEEEEHHHHHHHHH
Confidence 4444333333 234555433 4442 3444332211110 1224588888888776666654
No 62
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=97.57 E-value=0.0046 Score=63.53 Aligned_cols=188 Identities=16% Similarity=0.137 Sum_probs=103.7
Q ss_pred EEEEcCCCCCCCC---CCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEE
Q 006541 265 VVKFNGALGTNMG---FSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIH 341 (641)
Q Consensus 265 vv~LaGGlGTrlG---~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~ 341 (641)
+|.||||.||||. .+.||.++||. |+++++..++.+.. .|+. .++|-++. -.+...+++++...+|.++.
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~-~~p~i~~~~~~~~~----~gi~-~i~iv~~~-~~~~i~~~~~~~~~~~~~~~ 73 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIG-GRPILWHIMKIYSH----YGHN-DFILCLGY-KGHVIKEYFLNYFLHNSDVT 73 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEEC-CEEHHHHHHHHHHh----CCCc-eEEEECCC-CHHHHHHHHHhhhhhcCcee
Confidence 3789999999996 47899999996 57788876666654 2322 25555554 46788999988655554433
Q ss_pred EEecCCccccccCCCCCCC----ccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccc-cccCHHHHHHHhhc
Q 006541 342 SLSLSQQPHEKSFEGHSRK----DKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVA-AVADPKIFNHLIQN 416 (641)
Q Consensus 342 ~f~Q~~~P~~~~~~~~~~~----~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~-~~~Dp~~lg~~~~~ 416 (641)
+-.|+.--.+.+....+.. ....|-|.|..++.++.. +..+ +++.+.+.|++. .-+ -.++-++..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~-------~~~~-~~~lv~~gD~i~~~dl-~~ll~~h~~~ 144 (253)
T cd02524 74 IDLGTNRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRY-------LGDD-ETFMLTYGDGVSDVNI-NALIEFHRSH 144 (253)
T ss_pred EeecccceeeecccccccceeecccCcccccHHHHHHHHHh-------cCCC-CeEEEEcCCEEECCCH-HHHHHHHHHc
Confidence 3222110001000000000 112245555235555521 1112 799999999953 333 4456667777
Q ss_pred CCceEEEEeccCCCCCcceEEEee-CCeEEEEEecCCCccccCCCCceeeeeceeeeHHHHH
Q 006541 417 QIEYCMEVAPVPSIDLRNSLINLR-PGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIK 477 (641)
Q Consensus 417 ~~~~~~evv~k~~~d~kgG~l~~~-~g~~~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~ 477 (641)
++++.+-++. ....-|++... +|+ +.++.+-|... . ...+++...++-+.++
T Consensus 145 ~~~~tl~~~~---~~~~~g~v~~d~~g~--V~~~~ekp~~~-~---~~i~~Giyi~~~~l~~ 197 (253)
T cd02524 145 GKLATVTAVH---PPGRFGELDLDDDGQ--VTSFTEKPQGD-G---GWINGGFFVLEPEVFD 197 (253)
T ss_pred CCCEEEEEec---CCCcccEEEECCCCC--EEEEEECCCCC-C---ceEEEEEEEECHHHHH
Confidence 8887765553 22345666543 454 33444333321 1 1347777777755443
No 63
>PRK10122 GalU regulator GalF; Provisional
Probab=97.54 E-value=0.0064 Score=64.60 Aligned_cols=235 Identities=13% Similarity=0.125 Sum_probs=129.0
Q ss_pred CcEEEEEEcCCCCCCCC---CCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcC---
Q 006541 261 DKLVVVKFNGALGTNMG---FSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYS--- 334 (641)
Q Consensus 261 ~k~avv~LaGGlGTrlG---~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~--- 334 (641)
.++.+|.||||.||||. ...||.++||. |++++|..++.+.. .|+. .++|++.. ..+...++|....
T Consensus 2 ~~mkavIlAaG~GtRl~PlT~~~PK~llpi~-gkpiI~~~l~~l~~----~Gi~-~i~iv~~~-~~~~i~~~~~~~~~l~ 74 (297)
T PRK10122 2 TNLKAVIPVAGLGMHMLPATKAIPKEMLPIV-DKPMIQYIVDEIVA----AGIK-EIVLVTHA-SKNAVENHFDTSYELE 74 (297)
T ss_pred CceEEEEECCcCCcccCcccCCCCceeeEEC-CEEHHHHHHHHHHH----CCCC-EEEEEcCC-ChHHHHHHHhcchhHH
Confidence 46778999999999998 67899999997 46999998888876 3432 35666654 5577777775210
Q ss_pred -------------------CCCceEEEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEE
Q 006541 335 -------------------NSKVDIHSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALV 395 (641)
Q Consensus 335 -------------------~fg~~v~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v 395 (641)
.+|+++.+..| -.|-|.|..++.++.. + .+-+|+ +
T Consensus 75 ~~~~~~~k~~~l~~~~~~~~~~~~i~~~~q-----------------~~~lGtg~al~~a~~~-------l-~~~~fv-v 128 (297)
T PRK10122 75 SLLEQRVKRQLLAEVQSICPPGVTIMNVRQ-----------------GQPLGLGHSILCARPA-------I-GDNPFV-V 128 (297)
T ss_pred HHHhhcchhhhHHhhhhccCCCceEEEeec-----------------CCcCchHHHHHHHHHH-------c-CCCCEE-E
Confidence 02223332222 1255666235555532 2 123455 4
Q ss_pred EcCcccccc-------cC-HHHHHHHhhcCCceEEEEeccCCCCCcceEEEee-----CCeE-EEEEecCCCccccCCCC
Q 006541 396 VDSDNVAAV-------AD-PKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLR-----PGKF-QLVDITQNPTKQSGGKF 461 (641)
Q Consensus 396 ~nvDNL~~~-------~D-p~~lg~~~~~~~~~~~evv~k~~~d~kgG~l~~~-----~g~~-~lvEysq~~~~~~~~~~ 461 (641)
.+.|++... .| -.++-++.+++.+..+ ++........-|++... +|.+ +++++.|=|.......-
T Consensus 129 i~gD~l~~~~~~~~~~~dl~~li~~h~~~~~~~~~-~~~~~~~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~~~s 207 (297)
T PRK10122 129 VLPDVVIDDASADPLRYNLAAMIARFNETGRSQVL-AKRMPGDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDS 207 (297)
T ss_pred EECCeeccCccccccchhHHHHHHHHHHhCCcEEE-EEECCCCCCCceEEEecCcccCCCCeeeEEEEEECCCCcccCCc
Confidence 458896421 12 2356667777776433 22222233556888763 4543 66777665543211122
Q ss_pred ceeeeeceeeeHHHHHHHhhcCCCccceeecccccCCCCchhhhHhhhhHhhcCCCceEEEEeccccccccCCchhhhhh
Q 006541 462 KFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTSDLLLLQ 541 (641)
Q Consensus 462 ~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~~~~~~qlE~~i~d~i~~f~~~~~i~V~R~rF~PvKn~~dll~~~ 541 (641)
...|++-..++-+.+..+.+ .. | .+..-++|.-++...+.- .+..++.+. ..|.-+=+..|++.++
T Consensus 208 ~~~~~GiYi~~~~i~~~l~~---~~-~--------~~~~e~~ltd~i~~l~~~-~~v~~~~~~-G~w~DiG~p~~~~~a~ 273 (297)
T PRK10122 208 DLMAVGRYVLSADIWPELER---TE-P--------GAWGRIQLTDAIAELAKK-QSVDAMLMT-GDSYDCGKKMGYMQAF 273 (297)
T ss_pred cEEEEEEEEECHHHHHHHHh---CC-C--------CCCCeeeHHHHHHHHHhC-CCEEEEEeC-CEEEcCCCHHHHHHHH
Confidence 34688877777665444321 00 0 011224444333333221 123344332 3577777777777665
Q ss_pred hh
Q 006541 542 SD 543 (641)
Q Consensus 542 sd 543 (641)
-+
T Consensus 274 ~~ 275 (297)
T PRK10122 274 VK 275 (297)
T ss_pred HH
Confidence 55
No 64
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.53 E-value=0.02 Score=64.00 Aligned_cols=178 Identities=16% Similarity=0.136 Sum_probs=100.1
Q ss_pred cEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEE
Q 006541 262 KLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIH 341 (641)
Q Consensus 262 k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~ 341 (641)
++.++.||||.||||+...||.++|+. |+++++..++++.. .|.. ..++.++.. .+...+++... .+.
T Consensus 5 ~~~aiIlAaG~gtRl~~~~pK~l~~i~-gkpli~~~i~~l~~----~gi~-~i~vv~~~~-~~~i~~~~~~~-----~~~ 72 (456)
T PRK09451 5 AMSVVILAAGKGTRMYSDLPKVLHTLA-GKPMVQHVIDAANE----LGAQ-HVHLVYGHG-GDLLKQTLADE-----PLN 72 (456)
T ss_pred CceEEEEcCCCCCcCCCCCChhcceeC-ChhHHHHHHHHHHh----cCCC-cEEEEECCC-HHHHHHhhccC-----CcE
Confidence 578899999999999988899999995 79999988887754 2332 456666653 34555555321 122
Q ss_pred EEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcc-cccccCH-HHHHHHhhcCCc
Q 006541 342 SLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVADP-KIFNHLIQNQIE 419 (641)
Q Consensus 342 ~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~~~~~~~~ 419 (641)
+..|. .|.|-+..++.++.. + + .-++++|.+.|. +....|. .++..+.+.+
T Consensus 73 ~i~~~-----------------~~~Gt~~al~~a~~~------l-~-~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~-- 125 (456)
T PRK09451 73 WVLQA-----------------EQLGTGHAMQQAAPF------F-A-DDEDILMLYGDVPLISVETLQRLRDAKPQGG-- 125 (456)
T ss_pred EEECC-----------------CCCCcHHHHHHHHHh------h-c-cCCcEEEEeCCcccCCHHHHHHHHHHhhcCC--
Confidence 21111 244555235555431 2 1 247889999999 5322221 1223332223
Q ss_pred eEEEEeccCCCCCcceEEEeeCCeEEEEEecCCCccccCC-CCceeeeeceeeeHHHHHHHhh
Q 006541 420 YCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGG-KFKFINTRSMWVNLRAIKRLID 481 (641)
Q Consensus 420 ~~~evv~k~~~d~kgG~l~~~~g~~~lvEysq~~~~~~~~-~~~~fNtnni~~~l~~l~~~~~ 481 (641)
..+.+++...+. .-|++...+|+ +.++.|=|...... .....|++-..++-+.+.+.++
T Consensus 126 ~~i~~~~~~~~~-~yG~v~~~~g~--V~~~~EKp~~~~~~~~~~~~~~GiYi~~~~~l~~~l~ 185 (456)
T PRK09451 126 IGLLTVKLDNPT-GYGRITRENGK--VVGIVEQKDATDEQRQIQEINTGILVANGADLKRWLA 185 (456)
T ss_pred EEEEEEEcCCCC-CceEEEecCCe--EEEEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHH
Confidence 333444433432 35775444564 34444433221111 2235688888888777776654
No 65
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=97.39 E-value=0.0034 Score=62.12 Aligned_cols=139 Identities=12% Similarity=0.170 Sum_probs=84.1
Q ss_pred EEEcCCCCCCCC---CCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEEE
Q 006541 266 VKFNGALGTNMG---FSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHS 342 (641)
Q Consensus 266 v~LaGGlGTrlG---~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~~ 342 (641)
|.||||.||||. .+.||.++|+.+..++++..++.+.. .|+. ..+|.++.. .++..++|.+...++++.
T Consensus 2 vILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~----~gi~-~iivv~~~~-~~~i~~~~~~~~~~~~~~-- 73 (200)
T cd02508 2 IILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVN----SGIR-NVGVLTQYK-SRSLNDHLGSGKEWDLDR-- 73 (200)
T ss_pred EEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHH----CCCC-EEEEEeCCC-hHHHHHHHhCCCcccCCC--
Confidence 789999999996 47899999997434999998888876 3432 467777765 678888887665555430
Q ss_pred EecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccCHHHHHHHhhcCCceEE
Q 006541 343 LSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADPKIFNHLIQNQIEYCM 422 (641)
Q Consensus 343 f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~~~~~~~ 422 (641)
....+-.+.+. . ...+-.|-|.|..++.++. .+....-++++|.+.|++...---.++.++.+++.++.+
T Consensus 74 -~~~~~~~~~~~-~--~~~~~~~~Gta~al~~a~~------~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~ 143 (200)
T cd02508 74 -KNGGLFILPPQ-Q--RKGGDWYRGTADAIYQNLD------YIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITV 143 (200)
T ss_pred -CCCCEEEeCcc-c--CCCCCcccCcHHHHHHHHH------HHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEE
Confidence 00000000000 0 0012356677723555542 232333478889999995443223556666666655544
No 66
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=97.37 E-value=0.0079 Score=60.54 Aligned_cols=170 Identities=14% Similarity=0.281 Sum_probs=100.2
Q ss_pred EEEEcCCCCCCCCC---CCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEE
Q 006541 265 VVKFNGALGTNMGF---SGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIH 341 (641)
Q Consensus 265 vv~LaGGlGTrlG~---~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~ 341 (641)
.|.||||.||||+- ..||.++|+. |+++++..++++.. .|+. ..++.+.. ..+...++++++ .++.+
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~-g~~li~~~l~~l~~----~gi~-~i~vv~~~-~~~~~~~~~~~~--~~~~~- 70 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEIN-GKPLLERQIETLKE----AGID-DIVIVTGY-KKEQIEELLKKY--PNIKF- 70 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeEC-CEEHHHHHHHHHHH----CCCc-eEEEEecc-CHHHHHHHHhcc--CCeEE-
Confidence 37899999999974 5699999995 67999988877654 2332 45666665 456667777654 33332
Q ss_pred EEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccCHHHHHHHhhcCCceE
Q 006541 342 SLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADPKIFNHLIQNQIEYC 421 (641)
Q Consensus 342 ~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~~~~~~ 421 (641)
..|. .+.|.|.+..++.++. .+ -+++++.+.|++ .++.++-.+.+.+.+.+
T Consensus 71 -~~~~---------------~~~~~g~~~s~~~~~~------~~----~~~~lv~~~D~~---~~~~~~~~~~~~~~~~~ 121 (229)
T cd02523 71 -VYNP---------------DYAETNNIYSLYLARD------FL----DEDFLLLEGDVV---FDPSILERLLSSPADNA 121 (229)
T ss_pred -EeCc---------------chhhhCcHHHHHHHHH------Hc----CCCEEEEeCCEe---cCHHHHHHHHcCCCCCe
Confidence 1111 1224566524555542 22 268999999995 36778888888888877
Q ss_pred EEEeccCCCCCcceEEEe-eC-C-eEEEEEecCCCccccCCCCceeeeeceeeeHHHHHHH
Q 006541 422 MEVAPVPSIDLRNSLINL-RP-G-KFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRL 479 (641)
Q Consensus 422 ~evv~k~~~d~kgG~l~~-~~-g-~~~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~ 479 (641)
+-+.+... +......+. .+ | ....+|..+-+.. ....+++-..++=+.+.++
T Consensus 122 ~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~k~~~~~~-----~~~~~~Giy~~~~~~~~~l 176 (229)
T cd02523 122 ILVDKKTK-EWEDEYVKDLDDAGVLLGIISKAKNLEE-----IQGEYVGISKFSPEDADRL 176 (229)
T ss_pred EEEccCcc-cccccceeeecCccceEeecccCCCcch-----hceEEEeEEEECHHHHHHH
Confidence 66655222 222222222 22 2 2334443322221 1134777666776655554
No 67
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=97.30 E-value=0.0082 Score=60.27 Aligned_cols=133 Identities=17% Similarity=0.177 Sum_probs=83.8
Q ss_pred EEEEcCCCCCCCC---CCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcC-CCCc--
Q 006541 265 VVKFNGALGTNMG---FSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYS-NSKV-- 338 (641)
Q Consensus 265 vv~LaGGlGTrlG---~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~-~fg~-- 338 (641)
+|.||||.||||+ .+.||.++|+. |+++++..++.+.. .|.. ..+|.+...-.+...++++++. ..+.
T Consensus 3 aVILAgG~g~R~~plt~~~pK~Llpv~-g~pli~~~l~~l~~----~g~~-~iivv~~~~~~~~i~~~l~~~~~~~~~~~ 76 (214)
T cd04198 3 AVILAGGGGSRLYPLTDNIPKALLPVA-NKPMIWYPLDWLEK----AGFE-DVIVVVPEEEQAEISTYLRSFPLNLKQKL 76 (214)
T ss_pred EEEEeCCCCCcCCccccCCCcccCEEC-CeeHHHHHHHHHHH----CCCC-eEEEEECHHHHHHHHHHHHhcccccCcce
Confidence 4569999999997 57899999997 67999988888775 2321 3556666554566788887652 1111
Q ss_pred eEEEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccCHHHHHHHhhcCC
Q 006541 339 DIHSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADPKIFNHLIQNQI 418 (641)
Q Consensus 339 ~v~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~~~ 418 (641)
.+.... .-.+-|.| +........ + .+.+.|.+.|.+...---.++-.+.++++
T Consensus 77 ~~~~~~-----------------~~~~~gt~-~al~~~~~~-----i----~~d~lv~~~D~i~~~~l~~~l~~h~~~~~ 129 (214)
T cd04198 77 DEVTIV-----------------LDEDMGTA-DSLRHIRKK-----I----KKDFLVLSCDLITDLPLIELVDLHRSHDA 129 (214)
T ss_pred eEEEec-----------------CCCCcChH-HHHHHHHhh-----c----CCCEEEEeCccccccCHHHHHHHHhccCC
Confidence 111110 12367778 655554432 1 34578888887544333456677777788
Q ss_pred ceEEEEeccCCC
Q 006541 419 EYCMEVAPVPSI 430 (641)
Q Consensus 419 ~~~~evv~k~~~ 430 (641)
.+.+-+.+....
T Consensus 130 ~~t~~~~~~~~~ 141 (214)
T cd04198 130 SLTVLLYPPPVS 141 (214)
T ss_pred cEEEEEeccCCc
Confidence 888766665443
No 68
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=97.23 E-value=0.043 Score=56.64 Aligned_cols=245 Identities=9% Similarity=0.094 Sum_probs=125.6
Q ss_pred EEEEcCCCCCCCC---CCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEE
Q 006541 265 VVKFNGALGTNMG---FSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIH 341 (641)
Q Consensus 265 vv~LaGGlGTrlG---~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~ 341 (641)
+|+||||.||||+ ...||.++|+. |++++|..++++.+ .|+. ..+|.+... .+...++|.....+..+.
T Consensus 3 aiIlAaG~gtRl~plt~~~pK~llpv~-gkpli~~~l~~l~~----~gi~-~i~iv~~~~-~~~i~~~~~~~~~~~~~~- 74 (267)
T cd02541 3 AVIPAAGLGTRFLPATKAIPKEMLPIV-DKPVIQYIVEEAVA----AGIE-DIIIVTGRG-KRAIEDHFDRSYELEETL- 74 (267)
T ss_pred EEEEcCCCCccCCCcccCCCceeeEEC-CEEHHHHHHHHHHH----CCCC-EEEEEeCCc-hHHHHHHhCCcHHHHHHH-
Confidence 5889999999997 37899999996 57999998888775 3433 356666654 456777775321100000
Q ss_pred EEecC----Cccccc--cCC-CCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccC---HHHHH
Q 006541 342 SLSLS----QQPHEK--SFE-GHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVAD---PKIFN 411 (641)
Q Consensus 342 ~f~Q~----~~P~~~--~~~-~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~D---p~~lg 411 (641)
.|. .+|.+. |.+ .-....+..|-|.|..++.++. .+. + +-+.|.+.|++....| -.++.
T Consensus 75 --~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~-------~i~-~-~~~lv~~gD~~~~~~~~~~~~l~~ 143 (267)
T cd02541 75 --EKKGKTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKP-------FIG-D-EPFAVLLGDDLIDSKEPCLKQLIE 143 (267)
T ss_pred --HhcccHHHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHH-------HhC-C-CceEEEECCeEEeCCchHHHHHHH
Confidence 000 000000 000 0000112335677624555542 122 2 5567778888544433 24566
Q ss_pred HHhhcCCceE-EEEeccCCCCCcceEEEeeC--C-eEEEEEecCCCccccCCCCceeeeeceeeeHHHHHHHhhcCCCcc
Q 006541 412 HLIQNQIEYC-MEVAPVPSIDLRNSLINLRP--G-KFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTDELKV 487 (641)
Q Consensus 412 ~~~~~~~~~~-~evv~k~~~d~kgG~l~~~~--g-~~~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~~~~~~~~l 487 (641)
.+.+++.+.. ...++.. ....-|++...+ | ...+.++.+=|....... ...+++..+++=+.+..+.+ ..
T Consensus 144 ~~~~~~~~~~~~~~~~~~-~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~-~~~~~Giyi~~~~~~~~l~~-~~--- 217 (267)
T cd02541 144 AYEKTGASVIAVEEVPPE-DVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEAPS-NLAIVGRYVLTPDIFDILEN-TK--- 217 (267)
T ss_pred HHHHhCCCEEEEEEcChh-cCccceEEEeecCCCCceEEeEEEECCCCCCCCC-ceEEEEEEEcCHHHHHHHHh-CC---
Confidence 6666666532 2222211 124457765542 2 234555555444211111 23477877887665554421 00
Q ss_pred ceeecccccCCCCchhhhHhhhhHhhcCCCceEEEEeccccccccCCchhhhhhhhh
Q 006541 488 ENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTSDLLLLQSDL 544 (641)
Q Consensus 488 p~~~n~K~v~~~~~~qlE~~i~d~i~~f~~~~~i~V~R~rF~PvKn~~dll~~~sd~ 544 (641)
.+......+..++..++.- .+..++.++ ..|..|.+.+|++.+..|+
T Consensus 218 --------~~~~~e~~~~d~i~~l~~~-~~v~~~~~~-g~w~digt~~~y~~a~~~~ 264 (267)
T cd02541 218 --------PGKGGEIQLTDAIAKLLEE-EPVYAYVFE-GKRYDCGNKLGYLKATVEF 264 (267)
T ss_pred --------CCCCCcEEHHHHHHHHHhc-CCEEEEEee-eEEEeCCCHHHHHHHHHHH
Confidence 0011112333333333322 245566665 5689999999988776664
No 69
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.17 E-value=0.018 Score=62.99 Aligned_cols=198 Identities=12% Similarity=0.250 Sum_probs=128.8
Q ss_pred cCcEEEEEEcCCCCCCCC---CCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCC-cEEEecCccchHHHHHHHHHcCC
Q 006541 260 LDKLVVVKFNGALGTNMG---FSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNV-PLLLMNTAETHDRVQKVLEKYSN 335 (641)
Q Consensus 260 l~k~avv~LaGGlGTrlG---~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~i-Pl~iMtS~~T~~~T~~~l~k~~~ 335 (641)
..++..+.||||.|+||+ -..||..+|++..--+.|+.+-... +..| -..+.|-...| .-.++|..-..
T Consensus 3 ~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~v------NSGi~~I~VltQy~~~-SL~~Hi~~G~~ 75 (393)
T COG0448 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCV------NSGIRRIGVLTQYKSH-SLNDHIGRGWP 75 (393)
T ss_pred ccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEccccc------ccCCCeEEEEeccchh-HHHHHhhCCCc
Confidence 357788999999999997 5779999999866667776554432 2233 46788888888 66677777555
Q ss_pred CCce-----EEEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccCHHHH
Q 006541 336 SKVD-----IHSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADPKIF 410 (641)
Q Consensus 336 fg~~-----v~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~Dp~~l 410 (641)
|+++ ++.+.+.+ . .....|+=-+-- .+|+.| ..+.+.+-+|+.|.+.|=+-+.==-.+|
T Consensus 76 w~l~~~~~~v~ilp~~~--------~-~~~~~wy~Gtad-ai~Qnl------~~i~~~~~eyvlIlsgDhIYkmDy~~ml 139 (393)
T COG0448 76 WDLDRKNGGVFILPAQQ--------R-EGGERWYEGTAD-AIYQNL------LIIRRSDPEYVLILSGDHIYKMDYSDML 139 (393)
T ss_pred cccccccCcEEEeCchh--------c-cCCCcceeccHH-HHHHhH------HHHHhcCCCEEEEecCCEEEecCHHHHH
Confidence 6553 33322111 0 122335543333 455444 4455779999999999997775445679
Q ss_pred HHHhhcCCceEEEEe--ccCCCCCcceEEEeeCCeEEEEEecCCCccccCCCCceeeeeceeeeHHHHHHHhhcC
Q 006541 411 NHLIQNQIEYCMEVA--PVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTD 483 (641)
Q Consensus 411 g~~~~~~~~~~~evv--~k~~~d~kgG~l~~~~g~~~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~~~~~ 483 (641)
-+|++.++++.+-|. |+..+.+- | +...|..-+++|+.|=|.+...+. .+-..+.-.|+-+.|.++|+++
T Consensus 140 ~~H~~~gadiTv~~~~Vp~~eas~f-G-im~~D~~~~i~~F~eKp~~~~~~~-~laSMgiYIf~~~~L~~~L~~~ 211 (393)
T COG0448 140 DFHIESGADVTVAVKEVPREEASRF-G-VMNVDENGRIIEFVEKPADGPPSN-SLASMGIYIFNTDLLKELLEED 211 (393)
T ss_pred HHHHHcCCCEEEEEEECChHhhhhc-C-ceEECCCCCEEeeeeccCcCCccc-ceeeeeeEEEcHHHHHHHHHHH
Confidence 999999999765544 45544443 4 334455556778888887722211 1224566678999999998753
No 70
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=97.03 E-value=0.0025 Score=60.37 Aligned_cols=48 Identities=10% Similarity=0.259 Sum_probs=39.9
Q ss_pred EEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCc
Q 006541 265 VVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTA 320 (641)
Q Consensus 265 vv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~ 320 (641)
+|+||||.|+|||- ||.++++ .|+++++..++++.... + =++++.+..
T Consensus 1 ~vILa~G~s~Rmg~--~K~l~~i-~g~~li~~~l~~l~~~~----~-~~Ivvv~~~ 48 (160)
T PF12804_consen 1 AVILAAGKSSRMGG--PKALLPI-GGKPLIERVLEALREAG----V-DDIVVVTGE 48 (160)
T ss_dssp EEEEESSSCGGGTS--CGGGSEE-TTEEHHHHHHHHHHHHT----E-SEEEEEEST
T ss_pred CEEECCcCcccCCC--CccceeE-CCccHHHHHHHHhhccC----C-ceEEEecCh
Confidence 57899999999984 9999999 89999999999887753 1 267777776
No 71
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=96.94 E-value=0.06 Score=54.51 Aligned_cols=179 Identities=12% Similarity=0.143 Sum_probs=102.2
Q ss_pred cEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEE
Q 006541 262 KLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIH 341 (641)
Q Consensus 262 k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~ 341 (641)
++.++.||||.|+||| ||.++++ .|+++++..++++.... | +.-++..+. ++...+++.++ ++.+.
T Consensus 1 ~~~~iIlA~g~s~R~~---~K~l~~i-~gkpll~~~l~~l~~~~---~--i~~ivvv~~--~~~i~~~~~~~---~~~~~ 66 (239)
T cd02517 1 KVIVVIPARYASSRLP---GKPLADI-AGKPMIQHVYERAKKAK---G--LDEVVVATD--DERIADAVESF---GGKVV 66 (239)
T ss_pred CEEEEEecCCCCCCCC---CCCCccc-CCcCHHHHHHHHHHhCC---C--CCEEEEECC--cHHHHHHHHHc---CCEEE
Confidence 4678999999999996 7999999 48999999988887521 2 333333332 46777777653 33321
Q ss_pred EEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcc-cccccCH-HHHHHHhhc-CC
Q 006541 342 SLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVADP-KIFNHLIQN-QI 418 (641)
Q Consensus 342 ~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~~~~~-~~ 418 (641)
.+. ...+.|.| ++..++.. + ...-+++++.+.|+ +...-+. .++-.+... ++
T Consensus 67 --~~~---------------~~~~~gt~-~~~~~~~~------~-~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~ 121 (239)
T cd02517 67 --MTS---------------PDHPSGTD-RIAEVAEK------L-DADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGV 121 (239)
T ss_pred --EcC---------------cccCchhH-HHHHHHHh------c-CCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCC
Confidence 110 01245667 66665532 1 12247899999999 6543332 233333333 56
Q ss_pred ceEEEEeccCCCC-----CcceEEEeeCCeEEEEEecCC--Cc-cccCC-CCceeeeeceeeeHHHHHHHhh
Q 006541 419 EYCMEVAPVPSID-----LRNSLINLRPGKFQLVDITQN--PT-KQSGG-KFKFINTRSMWVNLRAIKRLID 481 (641)
Q Consensus 419 ~~~~evv~k~~~d-----~kgG~l~~~~g~~~lvEysq~--~~-~~~~~-~~~~fNtnni~~~l~~l~~~~~ 481 (641)
+...-+++-..+. ...|+....+|+ +.+..+- |+ ++..+ .-.+-|++-..++-+.++++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~~~~~~~ 191 (239)
T cd02517 122 DMATLATPISDEEELFNPNVVKVVLDKDGY--ALYFSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFAA 191 (239)
T ss_pred CEEEEEEEcCCHHHccCCCCCEEEECCCCC--EEEecCCCCCCCCCCCCCCceeEEEEEEEECHHHHHHHHh
Confidence 6655555543322 112333333554 3455432 22 11111 1234589888999888887643
No 72
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=96.93 E-value=0.0012 Score=68.69 Aligned_cols=70 Identities=13% Similarity=0.213 Sum_probs=50.0
Q ss_pred hhcCcEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHH
Q 006541 258 MLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEK 332 (641)
Q Consensus 258 ~~l~k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k 332 (641)
....++++|+||||.|||||.+.||.++++. |+++++..++.+..+. +++ .++|-++..-.+...+.+++
T Consensus 20 ~~~~~i~aIILAAG~gsRmg~~~pKqll~l~-Gkpll~~tl~~~~~~~---~i~-~IvVV~~~~~~~~~~~~~~~ 89 (252)
T PLN02728 20 VKEKSVSVILLAGGVGKRMGANMPKQYLPLL-GQPIALYSLYTFARMP---EVK-EIVVVCDPSYRDVFEEAVEN 89 (252)
T ss_pred cccCceEEEEEcccccccCCCCCCcceeEEC-CeEHHHHHHHHHHhCC---CCC-eEEEEeCHHHHHHHHHHHHh
Confidence 4446789999999999999998999999995 8899998887776531 222 34555554444555555543
No 73
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=96.93 E-value=0.064 Score=53.91 Aligned_cols=173 Identities=10% Similarity=0.139 Sum_probs=89.8
Q ss_pred EEEEcCCCCCCCC---CCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCcc-chHHHHHHHHHcCCCCceE
Q 006541 265 VVKFNGALGTNMG---FSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAE-THDRVQKVLEKYSNSKVDI 340 (641)
Q Consensus 265 vv~LaGGlGTrlG---~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~-T~~~T~~~l~k~~~fg~~v 340 (641)
+|.||||.||||+ .+.||.++|+. |+++++..++.+.. .|..-.+++-.+.. ..+...+.++.+. .++.+
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~-g~pli~~~l~~l~~----~g~~~ivvv~~~~~~~~~~~~~~~~~~~-~~~~i 74 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVD-GKPMIEWVIESLAK----IFDSRFIFICRDEHNTKFHLDESLKLLA-PNATV 74 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEEC-CEEHHHHHHHhhhc----cCCceEEEEEChHHhhhhhHHHHHHHhC-CCCEE
Confidence 4789999999995 47899999996 56999987776654 35444444332211 1112222333221 12332
Q ss_pred EEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccCH-HHHHHHhhcCCc
Q 006541 341 HSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADP-KIFNHLIQNQIE 419 (641)
Q Consensus 341 ~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~Dp-~~lg~~~~~~~~ 419 (641)
. +.|. .+.|.+..++.++.. + .+-++++|.+.|.+.. .|. ..+-.+...+.+
T Consensus 75 ~-~~~~-----------------~~~g~~~~l~~a~~~---l-----~~~~~~lv~~~D~i~~-~~~~~~~~~~~~~~~~ 127 (231)
T cd04183 75 V-ELDG-----------------ETLGAACTVLLAADL---I-----DNDDPLLIFNCDQIVE-SDLLAFLAAFRERDLD 127 (231)
T ss_pred E-EeCC-----------------CCCcHHHHHHHHHhh---c-----CCCCCEEEEecceeec-cCHHHHHHHhhccCCc
Confidence 1 1111 245555345555421 1 1346888999999532 232 233334445555
Q ss_pred eEEEEeccCCCCCcceEEEee-CCeE-EEEEecCCCccccCCCCceeeeeceeeeHH-HHHHHh
Q 006541 420 YCMEVAPVPSIDLRNSLINLR-PGKF-QLVDITQNPTKQSGGKFKFINTRSMWVNLR-AIKRLI 480 (641)
Q Consensus 420 ~~~evv~k~~~d~kgG~l~~~-~g~~-~lvEysq~~~~~~~~~~~~fNtnni~~~l~-~l~~~~ 480 (641)
.+.-++++ ....-|.+... +|+. ..+|- +.. . .+.|++-.+++-+ .+.+.+
T Consensus 128 ~~i~~~~~--~~~~~~~v~~d~~~~v~~~~ek---~~~----~-~~~~~Giy~~~~~~~~~~~l 181 (231)
T cd04183 128 GGVLTFFS--SHPRWSYVKLDENGRVIETAEK---EPI----S-DLATAGLYYFKSGSLFVEAA 181 (231)
T ss_pred eEEEEEeC--CCCCeEEEEECCCCCEEEeEEc---CCC----C-CccEeEEEEECcHHHHHHHH
Confidence 55444444 23345655443 4553 23342 110 1 1358887778754 333443
No 74
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=96.92 E-value=0.037 Score=59.08 Aligned_cols=187 Identities=13% Similarity=0.184 Sum_probs=129.4
Q ss_pred CcEEEEEEcCCCCCCC---CCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcC-CC
Q 006541 261 DKLVVVKFNGALGTNM---GFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYS-NS 336 (641)
Q Consensus 261 ~k~avv~LaGGlGTrl---G~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~-~f 336 (641)
..++.+.|-||-|||| =.+.||.+.|+. ++.+++.+++.... .|++ -.++-|+++-.+--+++.+.|. ++
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfg-n~pmI~hqieal~n----sGi~-~I~la~~y~s~sl~~~~~k~y~~~l 81 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFG-NKPMILHQIEALIN----SGIT-KIVLATQYNSESLNRHLSKAYGKEL 81 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccC-cchhhHHHHHHHHh----CCCc-EEEEEEecCcHHHHHHHHHHhhhcc
Confidence 5788999999999998 588999999999 88888866555442 2222 4788899988777788888874 57
Q ss_pred CceEEEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCce-EEEEEcCcccccccCHHHHHHHhh
Q 006541 337 KVDIHSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKE-YALVVDSDNVAAVADPKIFNHLIQ 415 (641)
Q Consensus 337 g~~v~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~e-yi~v~nvDNL~~~~Dp~~lg~~~~ 415 (641)
|+.|++=.|. .| -|-- +=-.+- .+.+...=+ -.||-|.|=|....=-.++.+|.+
T Consensus 82 gVei~~s~et-ep----------------lgta-Gpl~la------R~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~ 137 (371)
T KOG1322|consen 82 GVEILASTET-EP----------------LGTA-GPLALA------RDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRA 137 (371)
T ss_pred ceEEEEEecc-CC----------------Cccc-chHHHH------HHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHh
Confidence 7766544443 23 2222 221111 112211111 578999999999988899999999
Q ss_pred cCCceEEEEeccCCCCCcceEEEeeCCeEEEEEecCCCccccCCCCceeeeeceeeeHHHHHHHhh
Q 006541 416 NQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLID 481 (641)
Q Consensus 416 ~~~~~~~evv~k~~~d~kgG~l~~~~g~~~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~~~ 481 (641)
+++|-..-|++-.. ..|-|++....+.=++..++|=|.+.+. -+. |++--.++-+.|.+++-
T Consensus 138 ~gae~TI~~t~vde-pSkyGvv~~d~~~grV~~F~EKPkd~vs--nki-naGiYi~~~~vL~ri~~ 199 (371)
T KOG1322|consen 138 HGAEITIVVTKVDE-PSKYGVVVIDEDTGRVIRFVEKPKDLVS--NKI-NAGIYILNPEVLDRILL 199 (371)
T ss_pred cCCceEEEEEeccC-ccccceEEEecCCCceeEehhCchhhhh--ccc-cceEEEECHHHHhHhhh
Confidence 99998887776666 5678888876655567788888874432 122 55556678788887763
No 75
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=96.92 E-value=0.013 Score=65.42 Aligned_cols=242 Identities=16% Similarity=0.161 Sum_probs=130.0
Q ss_pred CCCeeeecC-----CCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHH----c-CCCCc--eEEEEecCC
Q 006541 280 GPKSAIEVK-----NNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEK----Y-SNSKV--DIHSLSLSQ 347 (641)
Q Consensus 280 ~pK~~l~v~-----~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k----~-~~fg~--~v~~f~Q~~ 347 (641)
.|||++|.. ..+.|-+..+|-.+..... -.+-+=+--|..-.+.-.+.+++ + ..+|+ +|.+=.|..
T Consensus 166 lPKGLl~FH~Y~~~~rTp~EEHL~Eaa~Ya~~~--g~~~lHFTVS~eH~~~F~~~~~~~~~~~e~~~~v~f~IsfS~Qk~ 243 (513)
T PF14134_consen 166 LPKGLLPFHKYPDGIRTPFEEHLVEAALYAKSN--GKANLHFTVSPEHLDLFKKEVEEVKPKYEKKYGVKFEISFSEQKP 243 (513)
T ss_pred CCceeeecccCCCCCcCcHHHHHHHHHHHHhcC--CeEEEEEeeCHHHHHHHHHHHHHHHHHHHHhhCceEEEEecccCC
Confidence 499999997 2344555555555554443 33444445565554444444443 2 23565 566666653
Q ss_pred c---cccc----cCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccc-cccCH-------HHHHH
Q 006541 348 Q---PHEK----SFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVA-AVADP-------KIFNH 412 (641)
Q Consensus 348 ~---P~~~----~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~-~~~Dp-------~~lg~ 412 (641)
. .+++ |+..+++++..-|.||| .+ ++.|-+..-.-|||=|+||.+ ...-. .+-|.
T Consensus 244 sTDTIAv~~dN~pFR~~dG~LlFRPgGHG-AL---------ieNLN~ldaDiIFIKNIDNVvpd~~k~~t~~yKk~LaG~ 313 (513)
T PF14134_consen 244 STDTIAVDPDNTPFRNEDGSLLFRPGGHG-AL---------IENLNDLDADIIFIKNIDNVVPDRLKEETVKYKKILAGK 313 (513)
T ss_pred CCCeeEECCCCCccCCCCCCEEeCCCcch-HH---------HhhhccccCCEEEEeCccccCCcccchhHHHHHHHHHHH
Confidence 2 2233 33356789999999999 43 444555567899999999944 22222 11222
Q ss_pred HhhcC-----------C-----------------ceEE-------------------EE---------eccCCCCCcceE
Q 006541 413 LIQNQ-----------I-----------------EYCM-------------------EV---------APVPSIDLRNSL 436 (641)
Q Consensus 413 ~~~~~-----------~-----------------~~~~-------------------ev---------v~k~~~d~kgG~ 436 (641)
+++-+ . +.+. +. .-|... |.||-
T Consensus 314 L~~lQ~~~F~yl~~L~~~~~~~~~l~ei~~Fl~~~L~~~~~~~~~~~~~~~~~~yL~~kLnRPiRVCGMVkNeG-EPGGG 392 (513)
T PF14134_consen 314 LLELQEKIFKYLKLLDKGKYSEEELEEIKDFLEEELNIKLPDDFKKLSDEEKIEYLKEKLNRPIRVCGMVKNEG-EPGGG 392 (513)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCcHHHHhhCHHHHHHHHHHHcCCCceeeeccccCC-CCCCC
Confidence 22110 0 0111 10 112232 33433
Q ss_pred -EEee--CCe--EEEEEecCCCccccCC-----CCceeeeeceeeeHHHHHHHhhcCCCccceeecccc-------cCCC
Q 006541 437 -INLR--PGK--FQLVDITQNPTKQSGG-----KFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKE-------VNDD 499 (641)
Q Consensus 437 -l~~~--~g~--~~lvEysq~~~~~~~~-----~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~-------v~~~ 499 (641)
+-.+ ||. +|++|-+|+...+.+. .-..||-=-|...+.-++- ...+|+-++.+++ .++.
T Consensus 393 PFwv~~~dG~~SLQIvEssQId~~~~~q~~if~~~THFNPVDLVCgvkdykG----~kFdL~~fvD~~tgFIs~KSk~Gk 468 (513)
T PF14134_consen 393 PFWVKNEDGTVSLQIVESSQIDMSNPEQKEIFKNSTHFNPVDLVCGVKDYKG----EKFDLPDFVDPNTGFISEKSKNGK 468 (513)
T ss_pred CeEEECCCCCEeeeeehhhhcCCCCHHHHHHHHcCCCCCccceEeeccCCCC----CcCCchhccCCCCceeeecCCCCc
Confidence 2222 564 7999999997655432 1122455444444432211 2245666655554 3443
Q ss_pred CchhhhH--hhhhHhhcCCCceEEEEeccccccccCCchhhh
Q 006541 500 QIISRGT--AADSAIQFFDHTIGINVAQSRYLPVNSTSDLLL 539 (641)
Q Consensus 500 ~~~qlE~--~i~d~i~~f~~~~~i~V~R~rF~PvKn~~dll~ 539 (641)
..=-||. .+--+... =+.+.+|||-..|.|||+-+|||-
T Consensus 469 ~LKAlELPGLWNGaMa~-WnTvFVEVPl~TFNPVKTVnDLLr 509 (513)
T PF14134_consen 469 ELKALELPGLWNGAMAD-WNTVFVEVPLITFNPVKTVNDLLR 509 (513)
T ss_pred cchhhccCCcccchhcC-CceEEEEeccccCCCccchhhhcc
Confidence 3333332 11111111 157899999999999999999985
No 76
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=96.90 E-value=0.028 Score=63.50 Aligned_cols=184 Identities=14% Similarity=0.091 Sum_probs=101.9
Q ss_pred EEEEcCCCCCCCC----CCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceE
Q 006541 265 VVKFNGALGTNMG----FSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDI 340 (641)
Q Consensus 265 vv~LaGGlGTrlG----~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v 340 (641)
.|.||||.||||+ .+.||-++++..++|+|+..++++..+ +.. ..+|.|+..-.+...+.++++ ++..
T Consensus 3 ~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~----~~~-~iviv~~~~~~~~~~~~l~~~---~~~~ 74 (468)
T TIGR01479 3 PVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGL----PCS-SPLVICNEEHRFIVAEQLREI---GKLA 74 (468)
T ss_pred EEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcC----CCc-CcEEecCHHHHHHHHHHHHHc---CCCc
Confidence 5889999999998 357999999987799999998887653 332 344556544334455555543 2211
Q ss_pred -EEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHH--cCceEEEEEcCcccccccCH-H---HHHHH
Q 006541 341 -HSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLV--QGKEYALVVDSDNVAAVADP-K---IFNHL 413 (641)
Q Consensus 341 -~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~--~G~eyi~v~nvDNL~~~~Dp-~---~lg~~ 413 (641)
.+..| -.|-|-|..+..+. ..+.+ .+-.+++|.+.|++.. |+ . ++..+
T Consensus 75 ~~~i~E-----------------p~~~gTa~ai~~aa------~~~~~~~~~~~~vlVl~~D~~i~--~~~~f~~~l~~~ 129 (468)
T TIGR01479 75 SNIILE-----------------PVGRNTAPAIALAA------LLAARRNGEDPLLLVLAADHVIT--DEDAFQAAVKLA 129 (468)
T ss_pred ceEEec-----------------ccccCchHHHHHHH------HHHHHHHCCCcEEEEecCceeec--CHHHHHHHHHHH
Confidence 11111 12223330111111 11112 2356899999999432 22 1 22222
Q ss_pred ---hhcCCceEEEEeccCCCCCcceEEEeeC-----CeEEEEEecCCCccccC-----CCCceeeeeceeeeHHHHHHHh
Q 006541 414 ---IQNQIEYCMEVAPVPSIDLRNSLINLRP-----GKFQLVDITQNPTKQSG-----GKFKFINTRSMWVNLRAIKRLI 480 (641)
Q Consensus 414 ---~~~~~~~~~evv~k~~~d~kgG~l~~~~-----g~~~lvEysq~~~~~~~-----~~~~~fNtnni~~~l~~l~~~~ 480 (641)
.+++.-+. -.+..+.+...-|.+...+ +...+..+-|=|+.... +.--++|++-..++.+.+.+.+
T Consensus 130 ~~~a~~~~lvt-lgi~p~~p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~~~wNsGif~~~~~~ll~~l 208 (468)
T TIGR01479 130 MPAAAEGKLVT-FGIVPTHPETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYLESGDYYWNSGMFLFRASRYLAEL 208 (468)
T ss_pred HHHHhcCCEEE-EEecCCCCCCCceEEEeCCccCCCCceEEeEEEECCChHHHHHHHhcCCeEEEeeEEEEEHHHHHHHH
Confidence 23344333 3344455666678887531 22344444444543221 1212579999999987777776
Q ss_pred hc
Q 006541 481 DT 482 (641)
Q Consensus 481 ~~ 482 (641)
++
T Consensus 209 ~~ 210 (468)
T TIGR01479 209 KK 210 (468)
T ss_pred HH
Confidence 65
No 77
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=96.78 E-value=0.055 Score=55.56 Aligned_cols=196 Identities=10% Similarity=0.095 Sum_probs=101.7
Q ss_pred EEEEcCCCCCCCCC---CCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEE
Q 006541 265 VVKFNGALGTNMGF---SGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIH 341 (641)
Q Consensus 265 vv~LaGGlGTrlG~---~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~ 341 (641)
+|.||||.||||+- ..||.++|+. |++++|..++.+.+ .|.. ..+|.|... .+...++|.+...++.+.
T Consensus 3 avIlAaG~gtRl~plt~~~pK~llpi~-g~pli~~~l~~l~~----~gi~-~v~iv~~~~-~~~i~~~~~~~~~~~~~~- 74 (260)
T TIGR01099 3 AVIPAAGLGTRFLPATKAIPKEMLPIV-DKPLIQYVVEEAVE----AGIE-DILIVTGRG-KRAIEDHFDTSYELEHQL- 74 (260)
T ss_pred EEEEcccCcccCCCcccCCCceeEEEC-CEEHHHHHHHHHHh----CCCC-EEEEEeCCc-HHHHHHHhcccHHHHHHH-
Confidence 68999999999964 7899999997 56999998887764 3443 466777765 456777776321100000
Q ss_pred EEecCCccccccC---CCC---CCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCccccccc--C-HHHHHH
Q 006541 342 SLSLSQQPHEKSF---EGH---SRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVA--D-PKIFNH 412 (641)
Q Consensus 342 ~f~Q~~~P~~~~~---~~~---~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~--D-p~~lg~ 412 (641)
-.++....+... .+. .......|.|.|..++.++. .+ +-+.+.|.+.|++.... | -.++-+
T Consensus 75 -~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~------~~---~~~~~lv~~gD~~~~~~~~~~~~l~~~ 144 (260)
T TIGR01099 75 -EKRGKEELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEP------FV---GDEPFAVILGDDIVVSEEPALKQMIDL 144 (260)
T ss_pred -HhhhhHHHHHHhhhccccceEEEEecCCCCCHHHHHHHHHH------hh---CCCCEEEEeccceecCCcHHHHHHHHH
Confidence 000000000000 000 00011236677733433332 12 33557788889943322 2 345667
Q ss_pred HhhcCCceEEEEeccCCCCCcceEEEee---CCeEEEEEecCCCccccCCCCceeeeeceeeeHHHHHHH
Q 006541 413 LIQNQIEYCMEVAPVPSIDLRNSLINLR---PGKFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRL 479 (641)
Q Consensus 413 ~~~~~~~~~~evv~k~~~d~kgG~l~~~---~g~~~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~ 479 (641)
+.+++++..+-...........|++... ++.-.++++.+=|..... .-...|++..+++-+.+..+
T Consensus 145 ~~~~~~~ii~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-~~~~~~~Giyi~~~~~~~~l 213 (260)
T TIGR01099 145 YEKYGCSIIAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEA-PSNLAIVGRYVLTPDIFDLL 213 (260)
T ss_pred HHHhCCCEEEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCC-CCceEEEEEEECCHHHHHHH
Confidence 7777777522211111223456776653 122245555554432111 11135788778876655554
No 78
>PLN02917 CMP-KDO synthetase
Probab=96.76 E-value=0.14 Score=54.44 Aligned_cols=227 Identities=8% Similarity=0.034 Sum_probs=122.4
Q ss_pred CcEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceE
Q 006541 261 DKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDI 340 (641)
Q Consensus 261 ~k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v 340 (641)
.+++++.+|+|.++||| +|-++++. |+++++..++++.... .+..++... .+++..++++++ ++++
T Consensus 46 ~~i~aIIpA~G~SsR~~---~K~L~~i~-GkPLL~~vi~~a~~~~-----~~~~VVV~~--~~e~I~~~~~~~---~v~v 111 (293)
T PLN02917 46 SRVVGIIPARFASSRFE---GKPLVHIL-GKPMIQRTWERAKLAT-----TLDHIVVAT--DDERIAECCRGF---GADV 111 (293)
T ss_pred CcEEEEEecCCCCCCCC---CCCeeeEC-CEEHHHHHHHHHHcCC-----CCCEEEEEC--ChHHHHHHHHHc---CCEE
Confidence 47889999999999996 59999996 8999999999887532 123344332 246777777643 3332
Q ss_pred EEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcc-cccccCHH-HHHHHhhcC-
Q 006541 341 HSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVADPK-IFNHLIQNQ- 417 (641)
Q Consensus 341 ~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~Dp~-~lg~~~~~~- 417 (641)
..|. .+.+.|-| .+..++. .+ +...+++.+.+.|. |...-+.. ++..+.++.
T Consensus 112 --i~~~---------------~~~~~GT~-~~~~a~~------~l-~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~~~ 166 (293)
T PLN02917 112 --IMTS---------------ESCRNGTE-RCNEALK------KL-EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 166 (293)
T ss_pred --EeCC---------------cccCCchH-HHHHHHH------hc-cCCCCEEEEecCCcCCCCHHHHHHHHHHHHhcCC
Confidence 1111 11355666 6655542 22 23467999999999 65433221 233232222
Q ss_pred CceEEEEecc--CCCCCcceEEEee--CCe-E----E-EEEecCCCccccCCCCceeeeeceeeeHHHHHHHhhcCCCcc
Q 006541 418 IEYCMEVAPV--PSIDLRNSLINLR--PGK-F----Q-LVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLIDTDELKV 487 (641)
Q Consensus 418 ~~~~~evv~k--~~~d~kgG~l~~~--~g~-~----~-lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~~~~~~~~l 487 (641)
+.++.-+.+= ..+.--|=+.+.. +|+ + . +.|..+..++. ..-...|++-.+++.++|..+ .+ +
T Consensus 167 ~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~~--~~i~~~n~Giy~f~~~~L~~l-~~----l 239 (293)
T PLN02917 167 AVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVNP--QFPYLLHLGIQSYDAKFLKIY-PE----L 239 (293)
T ss_pred ceEEEEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCccccc--ccceEEEEEEEEeCHHHHHHH-Hc----C
Confidence 2222222221 1222223333223 454 2 1 22333221111 122345999999999999944 21 1
Q ss_pred ceeecccccCCCCchhhhHhhhhHhhcCCCceEEEEeccccccccCCchhhhhhh
Q 006541 488 ENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTSDLLLLQS 542 (641)
Q Consensus 488 p~~~n~K~v~~~~~~qlE~~i~d~i~~f~~~~~i~V~R~rF~PvKn~~dll~~~s 542 (641)
+-. +..+-+.||.+. +++.=....++.++ +++.-|.|..||..++.
T Consensus 240 ~~~------n~e~e~yLtdl~--~le~G~~i~~~~~~-~~~~GVnt~~dL~~ae~ 285 (293)
T PLN02917 240 PPT------PLQLEEDLEQLK--VLENGYKMKVIKVD-HEAHGVDTPEDVEKIEA 285 (293)
T ss_pred CCC------cccchhccHHHH--HHhCCCceEEEEeC-CCCCCCCCHHHHHHHHH
Confidence 111 112345566665 22221223344444 57889999999877654
No 79
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.75 E-value=0.0042 Score=63.48 Aligned_cols=65 Identities=18% Similarity=0.340 Sum_probs=53.6
Q ss_pred EEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCC-cEEEecCccchHHHHHHHHHcCC
Q 006541 264 VVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNV-PLLLMNTAETHDRVQKVLEKYSN 335 (641)
Q Consensus 264 avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~i-Pl~iMtS~~T~~~T~~~l~k~~~ 335 (641)
..|.||.|.|||||-+.||.+++|+ |+++++.+++++.. ..+ -+++.|+..-.+....|+.+|+.
T Consensus 5 kavILAAG~GsRlg~~~PK~Lvev~-gr~ii~~~i~~L~~------~gi~e~vvV~~g~~~~lve~~l~~~~~ 70 (239)
T COG1213 5 KAVILAAGFGSRLGPDIPKALVEVG-GREIIYRTIENLAK------AGITEFVVVTNGYRADLVEEFLKKYPF 70 (239)
T ss_pred eEEEEecccccccCCCCCchhhhcC-CeEeHHHHHHHHHH------cCCceEEEEeccchHHHHHHHHhcCCc
Confidence 4688999999999999999999998 99999866666653 122 36888988888899999998875
No 80
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=96.65 E-value=0.0041 Score=61.44 Aligned_cols=125 Identities=17% Similarity=0.089 Sum_probs=75.9
Q ss_pred EEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEEEE
Q 006541 264 VVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHSL 343 (641)
Q Consensus 264 avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~~f 343 (641)
..+.||||.|||||. .||.++++. |+++++..++++... ++ =..++-+|.. ++.+..++++.. ..
T Consensus 2 ~aIILAgG~gsRmg~-~~K~Ll~i~-GkplI~~vi~~l~~~----~i-~~I~Vv~~~~-~~~~~~~l~~~~---~~---- 66 (183)
T TIGR00454 2 DALIMAGGKGTRLGG-VEKPLIEVC-GRCLIDHVLSPLLKS----KV-NNIIIATSPH-TPKTEEYINSAY---KD---- 66 (183)
T ss_pred eEEEECCccCccCCC-CCceEeEEC-CEEHHHHHHHHHHhC----CC-CEEEEEeCCC-HHHHHHHHhhcC---cE----
Confidence 358899999999986 799999996 799999988888652 21 2456667764 467888876521 00
Q ss_pred ecCCccccccCCCCCCCccccCCCCh--hhHHHHHHhcChhHHHHHcCceEEEEEcCcc-cccccC-HHHHHHHhhcCCc
Q 006541 344 SLSQQPHEKSFEGHSRKDKLYPSSDH--SVVFLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVAD-PKIFNHLIQNQIE 419 (641)
Q Consensus 344 ~Q~~~P~~~~~~~~~~~~~~~P~GhG--~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~D-p~~lg~~~~~~~~ 419 (641)
+. ..+|.| +++..+|.. + . --+++++...|- +...-+ -.++-.+...+.+
T Consensus 67 -------~~-----------~~~g~G~~~~l~~al~~------~-~-~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~ 120 (183)
T TIGR00454 67 -------YK-----------NASGKGYIEDLNECIGE------L-Y-FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAP 120 (183)
T ss_pred -------EE-----------ecCCCCHHHHHHHHhhc------c-c-CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCC
Confidence 11 024444 245554432 1 1 135789999997 432111 1233333344556
Q ss_pred eEEEEeccCC
Q 006541 420 YCMEVAPVPS 429 (641)
Q Consensus 420 ~~~evv~k~~ 429 (641)
...-++++..
T Consensus 121 ~~~~~~~~~~ 130 (183)
T TIGR00454 121 ALAVMIPKEK 130 (183)
T ss_pred ceEEEecccc
Confidence 6666666544
No 81
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=96.63 E-value=0.0039 Score=63.20 Aligned_cols=67 Identities=10% Similarity=0.125 Sum_probs=49.4
Q ss_pred cEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHc
Q 006541 262 KLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKY 333 (641)
Q Consensus 262 k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~ 333 (641)
.+++|+||||.|+|||.+.||-++++. |+++++..+++..... .--..++.+++...+...++++++
T Consensus 2 ~~~~iIlAaG~g~R~g~~~~K~l~~l~-gkpll~~~i~~~~~~~----~~~~ivVv~~~~~~~~~~~~~~~~ 68 (230)
T PRK13385 2 NYELIFLAAGQGKRMNAPLNKMWLDLV-GEPIFIHALRPFLADN----RCSKIIIVTQAQERKHVQDLMKQL 68 (230)
T ss_pred ceEEEEECCeeccccCCCCCcceeEEC-CeEHHHHHHHHHHcCC----CCCEEEEEeChhhHHHHHHHHHhc
Confidence 368899999999999988899999995 8999998888776421 112466666665545555566554
No 82
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=96.61 E-value=0.0026 Score=63.22 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=35.9
Q ss_pred CcEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHH
Q 006541 261 DKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVES 303 (641)
Q Consensus 261 ~k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~ 303 (641)
.+++.|+||||+|+||| .+|.++++..++|+++..++++..
T Consensus 7 ~~i~~vILAgG~s~RmG--~~K~ll~~~g~~~ll~~~i~~l~~ 47 (196)
T PRK00560 7 DNIPCVILAGGKSSRMG--ENKALLPFGSYSSLLEYQYTRLLK 47 (196)
T ss_pred cCceEEEECCcccccCC--CCceEEEeCCCCcHHHHHHHHHHH
Confidence 57889999999999998 589999997559999998888764
No 83
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=96.56 E-value=0.0029 Score=64.52 Aligned_cols=65 Identities=18% Similarity=0.283 Sum_probs=49.9
Q ss_pred EEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHH
Q 006541 263 LVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEK 332 (641)
Q Consensus 263 ~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k 332 (641)
+++|+||||.|+|||.+.||-.+++. |++.|+..++..+... .+ =-+++..+....+.+++++++
T Consensus 1 V~aIilAaG~G~R~g~~~pKQf~~l~-Gkpvl~~tl~~f~~~~---~i-~~Ivvv~~~~~~~~~~~~~~~ 65 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQFLELG-GKPVLEYTLEAFLASP---EI-DEIVVVVPPEDIDYVEELLSK 65 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GGGSEET-TEEHHHHHHHHHHTTT---TE-SEEEEEESGGGHHHHHHHHHH
T ss_pred CEEEEeCCccchhcCcCCCCeeeEEC-CeEeHHHHHHHHhcCC---CC-CeEEEEecchhHHHHHHhhcC
Confidence 68999999999999999999999995 9999998888775421 11 136677777777888888777
No 84
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=96.46 E-value=0.41 Score=51.06 Aligned_cols=246 Identities=11% Similarity=0.121 Sum_probs=128.5
Q ss_pred EEEEEcCCCCCCCCC---CCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCC--c
Q 006541 264 VVVKFNGALGTNMGF---SGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSK--V 338 (641)
Q Consensus 264 avv~LaGGlGTrlG~---~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg--~ 338 (641)
-+|.||||.||||+- ..||.++|+. |+++++..++.+.+. |+. -.++.+.. ..+...++|.....++ +
T Consensus 10 ~aiIlaaG~g~Rl~~~t~~~pK~l~pv~-g~pii~~~l~~l~~~----gi~-~i~vv~~~-~~~~i~~~~~~~~~~~~~l 82 (302)
T PRK13389 10 KAVIPVAGLGTRMLPATKAIPKEMLPLV-DKPLIQYVVNECIAA----GIT-EIVLVTHS-SKNSIENHFDTSFELEAML 82 (302)
T ss_pred EEEEECCcCCccCCCccCCCCceeeEEC-CEEHHHHHHHHHHHC----CCC-EEEEEeCC-CHHHHHHHHccchhhhhhh
Confidence 368889999999964 6899999996 569999998887763 321 24555554 4677888886422221 0
Q ss_pred e----EEEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccc-------cccC-
Q 006541 339 D----IHSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVA-------AVAD- 406 (641)
Q Consensus 339 ~----v~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~-------~~~D- 406 (641)
+ .. +.|.......|...-.......|-|.|-.++.+.. ++ +-+-++|.+.||+. ...|
T Consensus 83 ~~~~~~~-~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~-------~~--~~~~~lVl~gD~~~~~~~~~~~~~dl 152 (302)
T PRK13389 83 EKRVKRQ-LLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHP-------VV--GDEPVAVILPDVILDEYESDLSQDNL 152 (302)
T ss_pred hhhhhhH-HHHhhhhccccCceEEEeecCCCCChHHHHHHHHH-------Hc--CCCCEEEEeCcceecccccccccccH
Confidence 0 00 00000000000000000011346677612444432 12 22446777899954 1234
Q ss_pred HHHHHHHhhcCCceEEEEeccCCCCCcceEEEeeC-----C-eEEEEEecCCCccccCCCCceeeeeceeeeHHHHHHHh
Q 006541 407 PKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRP-----G-KFQLVDITQNPTKQSGGKFKFINTRSMWVNLRAIKRLI 480 (641)
Q Consensus 407 p~~lg~~~~~~~~~~~evv~k~~~d~kgG~l~~~~-----g-~~~lvEysq~~~~~~~~~~~~fNtnni~~~l~~l~~~~ 480 (641)
-.++-++.+++++ .+-+.+. .....-|++...+ | .-.++++-|-|..... .-.+.|++-..++-+.+ +.+
T Consensus 153 ~~l~~~h~~~~~~-tl~~~~~-~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~-~s~~~~~GiYi~~~~il-~~l 228 (302)
T PRK13389 153 AEMIRRFDETGHS-QIMVEPV-ADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA-PSNLAIVGRYVLSADIW-PLL 228 (302)
T ss_pred HHHHHHHHhcCCC-EEEEEEc-ccCCcceEEEecCcccccCCcceEEEEEECCCCCCC-CccEEEEEEEEECHHHH-HHH
Confidence 2467777777776 3333333 3345568886542 2 1244555555543221 11245888777876544 444
Q ss_pred hcCCCccceeecccccCCCCchhhhHhhhhHhhcCCCceEEEEeccccccccCCchhhhhhhh
Q 006541 481 DTDELKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTSDLLLLQSD 543 (641)
Q Consensus 481 ~~~~~~lp~~~n~K~v~~~~~~qlE~~i~d~i~~f~~~~~i~V~R~rF~PvKn~~dll~~~sd 543 (641)
+.. +. +..+-+.++-++...++- ....++.++ ..|.-+-+..|++.++-+
T Consensus 229 ~~~----~~-------~~~~e~~l~d~i~~l~~~-~~v~~~~~~-G~w~DIGtpe~~~~a~~~ 278 (302)
T PRK13389 229 AKT----PP-------GAGDEIQLTDAIDMLIEK-ETVEAYHMK-GKSHDCGNKLGYMQAFVE 278 (302)
T ss_pred HhC----CC-------CCCCeeeHHHHHHHHHHc-CCEEEEEee-eEEEeCCCHHHHHHHHHH
Confidence 321 00 111224444444444432 233444443 468888888998877665
No 85
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=96.41 E-value=0.012 Score=64.31 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=35.9
Q ss_pred cCcEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHH
Q 006541 260 LDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVE 302 (641)
Q Consensus 260 l~k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~ 302 (641)
+.++++|.||||+||||| ..||.+++++ |+++++..++++.
T Consensus 3 ~~~i~~VILAgG~s~Rmg-g~~K~ll~i~-Gkpll~~~i~~l~ 43 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMN-GRDKALILLG-GKPLIERVVDRLR 43 (366)
T ss_pred CCCceEEEEcCCcccCCC-CCCCceeEEC-CeeHHHHHHHHHH
Confidence 357889999999999997 3799999995 8999999888775
No 86
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=96.30 E-value=0.33 Score=49.06 Aligned_cols=218 Identities=10% Similarity=0.117 Sum_probs=117.4
Q ss_pred cEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEE
Q 006541 262 KLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIH 341 (641)
Q Consensus 262 k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~ 341 (641)
+++++.||||.++||+ +|-++++. |+++++..+++++... +++ .+++-| . ++.+.++++++ |.++.
T Consensus 2 ~~~aiIlA~g~s~R~~---~K~l~~i~-GkPli~~~i~~l~~~~---~~~-~ivv~t-~--~~~i~~~~~~~---~~~v~ 67 (238)
T PRK13368 2 KVVVVIPARYGSSRLP---GKPLLDIL-GKPMIQHVYERAAQAA---GVE-EVYVAT-D--DQRIEDAVEAF---GGKVV 67 (238)
T ss_pred cEEEEEecCCCCCCCC---CCccCccC-CcCHHHHHHHHHHhcC---CCC-eEEEEC-C--hHHHHHHHHHc---CCeEE
Confidence 5788999999999996 59999995 8999999888877521 221 234433 2 36788888753 44331
Q ss_pred EEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcc-cccccCH-HHHHHHhhcCC-
Q 006541 342 SLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVADP-KIFNHLIQNQI- 418 (641)
Q Consensus 342 ~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~Dp-~~lg~~~~~~~- 418 (641)
. +. ...+.|.+ .+..++.. + +-+++++.+.|+ +...-+- .++..+...+.
T Consensus 68 ~--~~---------------~~~~~g~~-~~~~a~~~------~---~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~ 120 (238)
T PRK13368 68 M--TS---------------DDHLSGTD-RLAEVMLK------I---EADIYINVQGDEPMIRPRDIDTLIQPMLDDPSI 120 (238)
T ss_pred e--cC---------------ccCCCccH-HHHHHHHh------C---CCCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCc
Confidence 1 10 11245666 55554432 1 568899999999 6443332 23444444443
Q ss_pred ceEEEEeccCC------CCCcceEEEeeCCeE-EEEEecCCCc--cccCCCCceeeeeceeeeHHHHHHHhhcCCCccce
Q 006541 419 EYCMEVAPVPS------IDLRNSLINLRPGKF-QLVDITQNPT--KQSGGKFKFINTRSMWVNLRAIKRLIDTDELKVEN 489 (641)
Q Consensus 419 ~~~~evv~k~~------~d~kgG~l~~~~g~~-~lvEysq~~~--~~~~~~~~~fNtnni~~~l~~l~~~~~~~~~~lp~ 489 (641)
.+.+-++++.. +. ..|+....+|++ .+.|.. .+. ++.. ...+.|++-..++-+.++.. +.. .
T Consensus 121 ~~~~~~~~~~~~~~~~~p~-~~~~~~~~~g~v~~~~~~~-~~~~~~~~~-~~~~~n~giy~~~~~~l~~~-~~~-~---- 191 (238)
T PRK13368 121 NVATLCAPISTEEEFESPN-VVKVVVDKNGDALYFSRSP-IPSRRDGES-ARYLKHVGIYAFRRDVLQQF-SQL-P---- 191 (238)
T ss_pred cceeEEEEcCCHHHhcCcC-CCEEEECCCCCEEEeeCCC-CCCCCCCCC-CceeEEEEEEEeCHHHHHHH-HcC-C----
Confidence 33333333221 21 223333346764 234321 111 1111 11134887788888877764 210 0
Q ss_pred eecccccCCCCchhhhHhhh-hHhhc--CCC-ceEEEEeccccccccCCchhhhhh
Q 006541 490 FSSSKEVNDDQIISRGTAAD-SAIQF--FDH-TIGINVAQSRYLPVNSTSDLLLLQ 541 (641)
Q Consensus 490 ~~n~K~v~~~~~~qlE~~i~-d~i~~--f~~-~~~i~V~R~rF~PvKn~~dll~~~ 541 (641)
...+|.+.+ +.+.+ ... ..++. ....+.-+-+.+|+..++
T Consensus 192 -----------~~~~~~~~~~~~~~~~~~g~~v~~~~-~~~~~~DI~t~~Dl~~a~ 235 (238)
T PRK13368 192 -----------ETPLEQIESLEQLRALEHGEKIRMVE-VAATSIGVDTPEDLERVR 235 (238)
T ss_pred -----------CChhhhhhhHHHHHHHHCCCceEEEE-eCCCCCCCCCHHHHHHHH
Confidence 001233333 33333 222 33443 445688888888887664
No 87
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=96.13 E-value=0.11 Score=52.27 Aligned_cols=160 Identities=14% Similarity=0.184 Sum_probs=87.2
Q ss_pred EEEEcCCCCCCCC---CCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCC----CC
Q 006541 265 VVKFNGALGTNMG---FSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSN----SK 337 (641)
Q Consensus 265 vv~LaGGlGTrlG---~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~----fg 337 (641)
+|.||||.|+||+ ...||.++|+. |++.++..++.+.. .|.. -.+|++...- +...+++.+... .+
T Consensus 3 avIlagg~g~rl~plt~~~pK~llpv~-g~pli~~~l~~l~~----~gi~-~i~vv~~~~~-~~~~~~~~~~~~~~~~~~ 75 (216)
T cd02507 3 AVVLADGFGSRFLPLTSDIPKALLPVA-NVPLIDYTLEWLEK----AGVE-EVFVVCCEHS-QAIIEHLLKSKWSSLSSK 75 (216)
T ss_pred EEEEeCCCccccCccccCCCcccceEC-CEEHHHHHHHHHHH----CCCC-eEEEEeCCcH-HHHHHHHHhcccccccCC
Confidence 4569999999996 47899999996 56999988777764 3322 3666776554 455666665321 11
Q ss_pred ceEEEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccCHHHHHH--Hhh
Q 006541 338 VDIHSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADPKIFNH--LIQ 415 (641)
Q Consensus 338 ~~v~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~--~~~ 415 (641)
..+... . . ....+-|.+ + +.+.....+ .+.+.+.+.|.+...--..++-. ...
T Consensus 76 ~~v~~~--------~---~----~~~~~~Gta-~--~l~~~~~~i-------~~dflv~~gD~i~~~~l~~~l~~~r~~~ 130 (216)
T cd02507 76 MIVDVI--------T---S----DLCESAGDA-L--RLRDIRGLI-------RSDFLLLSCDLVSNIPLSELLEERRKKD 130 (216)
T ss_pred ceEEEE--------E---c----cCCCCCccH-H--HHHHHhhcC-------CCCEEEEeCCEeecCCHHHHHHHHHhhC
Confidence 111100 0 0 011355655 2 222222222 35678888888543322334422 223
Q ss_pred cCCceEEEEeccCCCC--------CcceEEEee--CCeEEEEEecCCCccc
Q 006541 416 NQIEYCMEVAPVPSID--------LRNSLINLR--PGKFQLVDITQNPTKQ 456 (641)
Q Consensus 416 ~~~~~~~evv~k~~~d--------~kgG~l~~~--~g~~~lvEysq~~~~~ 456 (641)
.+.++.+-+....... ..-++++.. .++..+++|.+-+++.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~ 181 (216)
T cd02507 131 KNAIATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDED 181 (216)
T ss_pred cccceEEEEEeccCCCCccccccCCCCcEEEEcCCCCceEEEechhhcCcC
Confidence 3444444443332222 223555544 3458889988877654
No 88
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=96.06 E-value=0.012 Score=57.69 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=48.0
Q ss_pred EEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHc
Q 006541 264 VVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKY 333 (641)
Q Consensus 264 avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~ 333 (641)
.++.+|||+|||||. .-|-+++|. |+.+++.-++.++. . .=-.++-+|.+| ..|+.|+++-
T Consensus 2 ~~iiMAGGrGtRmg~-~EKPlleV~-GkpLI~~v~~al~~---~---~d~i~v~isp~t-p~t~~~~~~~ 62 (177)
T COG2266 2 MAIIMAGGRGTRMGR-PEKPLLEVC-GKPLIDRVLEALRK---I---VDEIIVAISPHT-PKTKEYLESV 62 (177)
T ss_pred ceEEecCCcccccCC-CcCcchhhC-CccHHHHHHHHHHh---h---cCcEEEEeCCCC-HhHHHHHHhc
Confidence 468999999999997 567899995 88888876666654 1 125788899998 6899998874
No 89
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=95.97 E-value=0.2 Score=52.54 Aligned_cols=155 Identities=16% Similarity=0.222 Sum_probs=103.6
Q ss_pred EEEcCCCCCCC---CCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEEE
Q 006541 266 VKFNGALGTNM---GFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHS 342 (641)
Q Consensus 266 v~LaGGlGTrl---G~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~~ 342 (641)
|.||||.|||| =+..||.++||- +|..++.-++++... |.+ -++|.++..+-...++++..=+.||++++.
T Consensus 4 iILAgG~GTRL~PlT~~~~KqLlpV~-~KPmi~y~l~~L~~a----GI~-dI~II~~~~~~~~~~~llGdgs~~gv~itY 77 (286)
T COG1209 4 VILAGGSGTRLRPLTRVVPKQLLPVY-DKPMIYYPLETLMLA----GIR-DILIVVGPEDKPTFKELLGDGSDFGVDITY 77 (286)
T ss_pred EEecCcCccccccccccCCcccceec-CcchhHhHHHHHHHc----CCc-eEEEEecCCchhhhhhhhcCccccCcceEE
Confidence 68999999998 488899999995 588888888887652 322 256667776767777777777899999888
Q ss_pred EecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcc-cccccCHHHHHHHhh--cCCc
Q 006541 343 LSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVADPKIFNHLIQ--NQIE 419 (641)
Q Consensus 343 f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~Dp~~lg~~~~--~~~~ 419 (641)
-.|. .|.|=+ + |+. +.+++. |-+=..++--|| +-.-+ ..++-.+.+ .++.
T Consensus 78 ~~Q~-----------------~p~GlA-~---Av~---~a~~fv--~~~~f~l~LGDNi~~~~l-~~~~~~~~~~~~ga~ 130 (286)
T COG1209 78 AVQP-----------------EPDGLA-H---AVL---IAEDFV--GDDDFVLYLGDNIFQDGL-SELLEHFAEEGSGAT 130 (286)
T ss_pred EecC-----------------CCCcHH-H---HHH---HHHhhc--CCCceEEEecCceeccCh-HHHHHHHhccCCCcE
Confidence 8775 356666 3 222 334444 445567788999 54433 445665555 4555
Q ss_pred eEEEEeccCCCCCcceEEEee-CCe-EEEEEecCCCccc
Q 006541 420 YCMEVAPVPSIDLRNSLINLR-PGK-FQLVDITQNPTKQ 456 (641)
Q Consensus 420 ~~~evv~k~~~d~kgG~l~~~-~g~-~~lvEysq~~~~~ 456 (641)
+...-|+ .| ++-||+... +|+ ..++|=-+.|+..
T Consensus 131 i~~~~V~--dP-~rfGV~e~d~~~~v~~l~EKP~~P~SN 166 (286)
T COG1209 131 ILLYEVD--DP-SRYGVVEFDEDGKVIGLEEKPKEPKSN 166 (286)
T ss_pred EEEEEcC--Cc-ccceEEEEcCCCcEEEeEECCCCCCCc
Confidence 5555444 43 568887776 565 4566765555543
No 90
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.93 E-value=0.015 Score=55.88 Aligned_cols=113 Identities=16% Similarity=0.185 Sum_probs=67.0
Q ss_pred EEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEEE
Q 006541 263 LVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHS 342 (641)
Q Consensus 263 ~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~~ 342 (641)
+++|.||||.|+|||- ||.++++. |+++++..++++... ++ -+.++-|+.. ++...+++. .+++.+
T Consensus 1 ~~~vIlAgG~s~R~g~--~K~l~~~~-g~~li~~~i~~l~~~----~~-~~i~vv~~~~-~~~~~~~~~---~~~~~~-- 66 (186)
T cd04182 1 IAAIILAAGRSSRMGG--NKLLLPLD-GKPLLRHALDAALAA----GL-SRVIVVLGAE-ADAVRAALA---GLPVVV-- 66 (186)
T ss_pred CeEEEECCCCCCCCCC--CceeCeeC-CeeHHHHHHHHHHhC----CC-CcEEEECCCc-HHHHHHHhc---CCCeEE--
Confidence 3678999999999985 99999994 899999988887653 22 2455555543 333333322 222210
Q ss_pred EecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcc-cccccCHHHHHHHhh
Q 006541 343 LSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVADPKIFNHLIQ 415 (641)
Q Consensus 343 f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~Dp~~lg~~~~ 415 (641)
+. ++. ...|-+++++.+|.... ++-+|+++...|. +. ++..+-.+++
T Consensus 67 --------~~--~~~------~~~G~~~~i~~al~~~~-------~~~~~vlv~~~D~P~i---~~~~i~~l~~ 114 (186)
T cd04182 67 --------VI--NPD------WEEGMSSSLAAGLEALP-------ADADAVLILLADQPLV---TAETLRALID 114 (186)
T ss_pred --------Ee--CCC------hhhCHHHHHHHHHHhcc-------ccCCEEEEEeCCCCCC---CHHHHHHHHH
Confidence 11 000 01232224666664431 2578999999998 43 3455544443
No 91
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=95.90 E-value=0.09 Score=57.91 Aligned_cols=150 Identities=15% Similarity=0.191 Sum_probs=83.8
Q ss_pred CcEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceE
Q 006541 261 DKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDI 340 (641)
Q Consensus 261 ~k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v 340 (641)
.++++|+||||.|||||...||-++++. |+++++..++.+.... .-=..++-++....+....+++.+ .. +
T Consensus 4 m~v~aIILAAG~GsRmg~~~pKqll~l~-GkPll~~tl~~l~~~~----~i~~IvVVv~~~~~~~~~~~~~~~---~~-v 74 (378)
T PRK09382 4 SDISLVIVAAGRSTRFSAEVKKQWLRIG-GKPLWLHVLENLSSAP----AFKEIVVVIHPDDIAYMKKALPEI---KF-V 74 (378)
T ss_pred CcceEEEECCCCCccCCCCCCeeEEEEC-CeeHHHHHHHHHhcCC----CCCeEEEEeChHHHHHHHHhcccC---Ce-E
Confidence 4688999999999999988999999995 8999998888776431 101344444443332222222111 10 1
Q ss_pred EEEecCCccccccCCCCCCCccccCCCC---hhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccCHHHHHHHhhc-
Q 006541 341 HSLSLSQQPHEKSFEGHSRKDKLYPSSD---HSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADPKIFNHLIQN- 416 (641)
Q Consensus 341 ~~f~Q~~~P~~~~~~~~~~~~~~~P~Gh---G~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~- 416 (641)
. +...|. . .++.+|.. + + . +|++|+..|= -.+++..+.-+++.
T Consensus 75 ~---------------------~v~gG~~r~~-SV~~gL~~------l-~-~-d~VLVhdadr--Pfv~~e~I~~li~~~ 121 (378)
T PRK09382 75 T---------------------LVTGGATRQE-SVRNALEA------L-D-S-EYVLIHDAAR--PFVPKELIDRLIEAL 121 (378)
T ss_pred E---------------------EeCCCchHHH-HHHHHHHh------c-C-C-CeEEEeeccc--cCCCHHHHHHHHHHh
Confidence 0 011111 2 36666642 1 1 2 7888875442 34566666666552
Q ss_pred -CCceEEEEeccCCCCCcceEEEeeCCeEEEEEecCCC
Q 006541 417 -QIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNP 453 (641)
Q Consensus 417 -~~~~~~evv~k~~~d~kgG~l~~~~g~~~lvEysq~~ 453 (641)
+.+.+.-++|.+.+-.. |.......++..++.-|..
T Consensus 122 ~~~~a~i~~~pv~Dtik~-~~~tldR~~l~~~QTPQ~f 158 (378)
T PRK09382 122 DKADCVLPALPVADTLKR-ANETVDREGLKLIQTPQLS 158 (378)
T ss_pred hcCCeEEEEEEeccCcEE-eeeEcCcccEEEEECCCCC
Confidence 34566666666665333 3223334456666554443
No 92
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=95.89 E-value=0.2 Score=49.79 Aligned_cols=180 Identities=12% Similarity=0.150 Sum_probs=97.9
Q ss_pred cEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEE
Q 006541 262 KLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIH 341 (641)
Q Consensus 262 k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~ 341 (641)
|+++++||||.|+||| .|.+.++. |+++++..+++++... .+.-++.++ .+++..++++++. ..+
T Consensus 1 ~~~~iIlA~G~s~R~~---~K~l~~l~-Gkpll~~~l~~l~~~~-----~~~~IvV~~--~~~~i~~~~~~~~---~~~- 65 (223)
T cd02513 1 KILAIIPARGGSKGIP---GKNIRPLG-GKPLIAWTIEAALESK-----LFDRVVVST--DDEEIAEVARKYG---AEV- 65 (223)
T ss_pred CeEEEEecCCCCCCCC---CcccchhC-CccHHHHHHHHHHhCC-----CCCEEEEEC--CcHHHHHHHHHhC---CCc-
Confidence 5788999999999996 48898885 8999999998887532 122233333 2456666666542 211
Q ss_pred EEecCCccccccCCCCCCCccccCC--CChhhHHHHHHhcChhHHHHHc--CceEEEEEcCcc-cccccCH-HHHHHHhh
Q 006541 342 SLSLSQQPHEKSFEGHSRKDKLYPS--SDHSVVFLSLMKSGTLDLLLVQ--GKEYALVVDSDN-VAAVADP-KIFNHLIQ 415 (641)
Q Consensus 342 ~f~Q~~~P~~~~~~~~~~~~~~~P~--GhG~di~~aL~~sG~Ld~l~~~--G~eyi~v~nvDN-L~~~~Dp-~~lg~~~~ 415 (641)
.+.. | ..+..+ |-++.+..++ +.+.+. +.+++++.+.|. +...-+- .++..+..
T Consensus 66 ~~~~---~-----------~~~~~~~~~~~~~i~~~l------~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~ 125 (223)
T cd02513 66 PFLR---P-----------AELATDTASSIDVILHAL------DQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLS 125 (223)
T ss_pred eeeC---C-----------hHHCCCCCCcHHHHHHHH------HHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHh
Confidence 1111 0 112222 2221244444 223222 368999999999 6543332 34555555
Q ss_pred cCCceEEEEeccCCCCCcceEEEeeCCeEEEEEecC---CCccccCCCCceeeeeceeeeHHHHHHH
Q 006541 416 NQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQ---NPTKQSGGKFKFINTRSMWVNLRAIKRL 479 (641)
Q Consensus 416 ~~~~~~~evv~k~~~d~kgG~l~~~~g~~~lvEysq---~~~~~~~~~~~~fNtnni~~~l~~l~~~ 479 (641)
++.+.++-+++-..... .+.....+| ...+-+.+ ...++....| ..|.+-.+++-+++.+.
T Consensus 126 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~q~~~~~~-~~n~~~y~~~~~~~~~~ 189 (223)
T cd02513 126 EGADSVFSVTEFHRFPW-RALGLDDNG-LEPVNYPEDKRTRRQDLPPAY-HENGAIYIAKREALLES 189 (223)
T ss_pred CCCCEEEEEEecCcCcH-HheeeccCC-ceeccCcccccCCcCCChhHe-eECCEEEEEEHHHHHhc
Confidence 67788887776554332 222222333 33333221 1111211133 24776777888877663
No 93
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=95.76 E-value=0.011 Score=59.00 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=34.7
Q ss_pred CcEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHH
Q 006541 261 DKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVES 303 (641)
Q Consensus 261 ~k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~ 303 (641)
-++..|.||||.|+|||. +|.++++. |+|+++..++.+..
T Consensus 6 ~~~~~vILAgG~s~Rmg~--~K~ll~~~-g~~ll~~~i~~l~~ 45 (200)
T PRK02726 6 NNLVALILAGGKSSRMGQ--DKALLPWQ-GVPLLQRVARIAAA 45 (200)
T ss_pred CCceEEEEcCCCcccCCC--CceeeEEC-CEeHHHHHHHHHHh
Confidence 367889999999999994 79999995 89999998888764
No 94
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=95.66 E-value=0.011 Score=57.30 Aligned_cols=105 Identities=14% Similarity=0.228 Sum_probs=66.3
Q ss_pred EEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEEEE
Q 006541 264 VVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHSL 343 (641)
Q Consensus 264 avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~~f 343 (641)
+.|.||||.|+|||. ||.++++. |+++++..++++... .-+.++-|+...++ ..+ +++.+
T Consensus 2 ~~iILAgG~s~Rmg~--~K~ll~~~-g~~ll~~~i~~l~~~------~~~iivv~~~~~~~-----~~~---~~~~~--- 61 (181)
T cd02503 2 TGVILAGGKSRRMGG--DKALLELG-GKPLLEHVLERLKPL------VDEVVISANRDQER-----YAL---LGVPV--- 61 (181)
T ss_pred cEEEECCCccccCCC--CceeeEEC-CEEHHHHHHHHHHhh------cCEEEEECCCChHH-----Hhh---cCCcE---
Confidence 578999999999995 99999995 799999888877653 12566666655433 111 22221
Q ss_pred ecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcc-cccccCHHHHHHHhh
Q 006541 344 SLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVADPKIFNHLIQ 415 (641)
Q Consensus 344 ~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~Dp~~lg~~~~ 415 (641)
+. ++. ...|-.++++.+|... ..++++|...|. + +++..+..+++
T Consensus 62 -------v~--~~~------~~~G~~~si~~~l~~~---------~~~~vlv~~~D~P~---i~~~~i~~l~~ 107 (181)
T cd02503 62 -------IP--DEP------PGKGPLAGILAALRAA---------PADWVLVLACDMPF---LPPELLERLLA 107 (181)
T ss_pred -------ee--CCC------CCCCCHHHHHHHHHhc---------CCCeEEEEeCCcCC---CCHHHHHHHHH
Confidence 11 000 0012222577776542 368999999998 4 46667766665
No 95
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=95.53 E-value=0.014 Score=57.24 Aligned_cols=115 Identities=13% Similarity=0.135 Sum_probs=65.9
Q ss_pred EEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHc--CCCCceEE
Q 006541 264 VVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKY--SNSKVDIH 341 (641)
Q Consensus 264 avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~--~~fg~~v~ 341 (641)
++|+||||.|+|||. +|.++++. |+++++..++..+.. ++. .++|-++..-+ + .+.+.+. ...++
T Consensus 2 ~~vILAgG~s~Rmg~--~K~ll~~~-g~~ll~~~i~~~~~~----~~~-~i~vv~~~~~~-~-~~~~~~~~~~~~~~--- 68 (190)
T TIGR03202 2 VAIYLAAGQSRRMGE--NKLALPLG-ETTLGSASLKTALSS----RLS-KVIVVIGEKYA-H-LSWLDPYLLADERI--- 68 (190)
T ss_pred eEEEEcCCccccCCC--CceeceeC-CccHHHHHHHHHHhC----CCC-cEEEEeCCccc-h-hhhhhHhhhcCCCe---
Confidence 468999999999995 79999995 899999888776431 222 45565554322 1 2222221 11111
Q ss_pred EEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcc-cccccCHHHHHHHhh
Q 006541 342 SLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVADPKIFNHLIQ 415 (641)
Q Consensus 342 ~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~Dp~~lg~~~~ 415 (641)
..+. . + .|.+ |=++.++.+|.. +...+.+|++|..+|- +. ++..+-.+++
T Consensus 69 -------~~~~-~-~-----~~~~-G~~~si~~gl~~------~~~~~~d~vlv~~~D~P~v---~~~~i~~L~~ 119 (190)
T TIGR03202 69 -------MLVC-C-R-----DACE-GQAHSLKCGLRK------AEAMGADAVVILLADQPFL---TADVINALLA 119 (190)
T ss_pred -------EEEE-C-C-----Chhh-hHHHHHHHHHHH------hccCCCCeEEEEeCCCCCC---CHHHHHHHHH
Confidence 1111 0 0 0111 212257777753 2234688999999998 43 4555555544
No 96
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=95.50 E-value=0.012 Score=57.06 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=32.5
Q ss_pred EEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHH
Q 006541 263 LVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVE 302 (641)
Q Consensus 263 ~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~ 302 (641)
+++|.||||.|||||- .||.++++. |+++++..++.+.
T Consensus 1 ~~~iILAgG~s~Rmg~-~~K~l~~i~-g~pll~~~l~~l~ 38 (186)
T TIGR02665 1 ISGVILAGGRARRMGG-RDKGLVELG-GKPLIEHVLARLR 38 (186)
T ss_pred CeEEEEcCCccccCCC-CCCceeEEC-CEEHHHHHHHHHH
Confidence 3678999999999983 399999995 7999998888775
No 97
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=95.43 E-value=0.016 Score=57.02 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=34.4
Q ss_pred CcEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHH
Q 006541 261 DKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVE 302 (641)
Q Consensus 261 ~k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~ 302 (641)
.++.+|.||||.|||||. .||.++++ .|+++++..++.+.
T Consensus 2 ~~~~~vILA~G~s~Rm~~-~~K~ll~~-~g~~ll~~~i~~l~ 41 (193)
T PRK00317 2 PPITGVILAGGRSRRMGG-VDKGLQEL-NGKPLIQHVIERLA 41 (193)
T ss_pred CCceEEEEcCCCcccCCC-CCCceeEE-CCEEHHHHHHHHHh
Confidence 367899999999999963 69999999 58999998888775
No 98
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=95.41 E-value=0.016 Score=58.45 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=36.9
Q ss_pred cEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHH
Q 006541 262 KLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVES 303 (641)
Q Consensus 262 k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~ 303 (641)
++++|+||||.|||||...||.++++. |+++++..++++..
T Consensus 3 ~~~~iILAaG~s~R~g~~~~K~l~~~~-g~pli~~~l~~l~~ 43 (227)
T PRK00155 3 MVYAIIPAAGKGSRMGADRPKQYLPLG-GKPILEHTLEAFLA 43 (227)
T ss_pred ceEEEEEcCccccccCCCCCceeeEEC-CEEHHHHHHHHHHc
Confidence 578899999999999988999999995 89999998888764
No 99
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=95.39 E-value=0.014 Score=58.14 Aligned_cols=55 Identities=13% Similarity=0.241 Sum_probs=41.4
Q ss_pred EEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccc
Q 006541 263 LVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAET 322 (641)
Q Consensus 263 ~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T 322 (641)
+++|.||||.|+|||...||.++++ .|+++++..++++.... .+ =..++-++...
T Consensus 1 ~~~vILAaG~s~R~~~~~~K~l~~i-~Gkpll~~~i~~l~~~~---~~-~~ivVv~~~~~ 55 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQFLEL-GGKPVLEHTLEAFLAHP---AI-DEIVVVVPPDD 55 (218)
T ss_pred CEEEEECCcccccCCCCCCcceeEE-CCeEHHHHHHHHHhcCC---CC-CEEEEEeChhH
Confidence 3678999999999998789999999 58999999988886531 01 13555555443
No 100
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=95.36 E-value=0.039 Score=55.12 Aligned_cols=107 Identities=14% Similarity=0.243 Sum_probs=67.9
Q ss_pred CcEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceE
Q 006541 261 DKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDI 340 (641)
Q Consensus 261 ~k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v 340 (641)
.....|.||||+|+|| .+|+++++. |++++|+.++++... +. .++|. +....+. +..+|..
T Consensus 3 ~~~~~vILAGG~srRm---~dK~l~~~~-g~~lie~v~~~L~~~-----~~-~vvi~-~~~~~~~-------~~~~g~~- 63 (192)
T COG0746 3 TPMTGVILAGGKSRRM---RDKALLPLN-GRPLIEHVIDRLRPQ-----VD-VVVIS-ANRNQGR-------YAEFGLP- 63 (192)
T ss_pred CCceEEEecCCccccc---cccccceeC-CeEHHHHHHHHhccc-----CC-EEEEe-CCCchhh-------hhccCCc-
Confidence 3567899999999999 899999995 699999988888642 22 34444 3333331 3334432
Q ss_pred EEEecCCccccccCCCCCCCccccCCCCh--hhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccCHHHHHHHhhc
Q 006541 341 HSLSLSQQPHEKSFEGHSRKDKLYPSSDH--SVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADPKIFNHLIQN 416 (641)
Q Consensus 341 ~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG--~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~ 416 (641)
-+. . .++|+| ++||++|.. -+-+|+++..+|. -.+.+.++-++.+.
T Consensus 64 ---------vv~-D---------~~~~~GPL~Gi~~al~~---------~~~~~~~v~~~D~--P~i~~~lv~~l~~~ 111 (192)
T COG0746 64 ---------VVP-D---------ELPGFGPLAGILAALRH---------FGTEWVLVLPCDM--PFIPPELVERLLSA 111 (192)
T ss_pred ---------eee-c---------CCCCCCCHHHHHHHHHh---------CCCCeEEEEecCC--CCCCHHHHHHHHHh
Confidence 221 1 111213 256666644 4689999999998 22346667766664
No 101
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=95.33 E-value=0.015 Score=58.08 Aligned_cols=38 Identities=24% Similarity=0.254 Sum_probs=34.1
Q ss_pred EEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHH
Q 006541 265 VVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVES 303 (641)
Q Consensus 265 vv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~ 303 (641)
.|.||||.|||||.+.||.++++. |+++++..++++..
T Consensus 2 aiIlAaG~s~R~~~~~~K~l~~l~-gkpll~~~l~~l~~ 39 (217)
T TIGR00453 2 AVIPAAGRGTRFGSGVPKQYLELG-GRPLLEHTLDAFLA 39 (217)
T ss_pred EEEEcCcccccCCCCCCccEeEEC-CeEHHHHHHHHHhc
Confidence 589999999999988899999995 89999998888864
No 102
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.30 E-value=0.02 Score=62.64 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=33.5
Q ss_pred cEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHH
Q 006541 262 KLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVES 303 (641)
Q Consensus 262 k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~ 303 (641)
+++.|+||||+|+||| .+|.++++. |+++++..++.+..
T Consensus 174 ~i~~iILAGG~SsRmG--~~K~ll~~~-Gk~ll~~~l~~l~~ 212 (369)
T PRK14490 174 PLSGLVLAGGRSSRMG--SDKALLSYH-ESNQLVHTAALLRP 212 (369)
T ss_pred CceEEEEcCCccccCC--CCcEEEEEC-CccHHHHHHHHHHh
Confidence 4578999999999999 499999994 89999988777753
No 103
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=95.30 E-value=0.017 Score=55.89 Aligned_cols=51 Identities=22% Similarity=0.236 Sum_probs=39.6
Q ss_pred EEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccch
Q 006541 265 VVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETH 323 (641)
Q Consensus 265 vv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~ 323 (641)
+|+||||.||||| .||.++++ .|+++++..++++... ++ -+.++.++...+
T Consensus 2 ~iIla~G~s~R~g--~~K~ll~~-~g~pll~~~i~~l~~~----~~-~~iivv~~~~~~ 52 (188)
T TIGR03310 2 AIILAAGLSSRMG--QNKLLLPY-KGKTILEHVVDNALRL----FF-DEVILVLGHEAD 52 (188)
T ss_pred eEEECCCCcccCC--CCceeccc-CCeeHHHHHHHHHHHc----CC-CcEEEEeCCcHH
Confidence 5899999999998 69999999 4899999988877642 22 256777776543
No 104
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=1.3 Score=47.09 Aligned_cols=237 Identities=11% Similarity=0.124 Sum_probs=140.2
Q ss_pred EEEEEcCC--CCCCC---CCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHc-CCCC
Q 006541 264 VVVKFNGA--LGTNM---GFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKY-SNSK 337 (641)
Q Consensus 264 avv~LaGG--lGTrl---G~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~-~~fg 337 (641)
..|.|-|| -|||. -|+-||-++|+. |....+.++.+..++. | +-=++.--|.-.+.-..|+..- +.|.
T Consensus 4 ~AVIlVGGP~kGTRFRPLSf~vPKPLfpia-G~pmI~Hhi~ac~qi~---~--l~eI~LvGFy~e~~f~~fis~~~~e~~ 77 (407)
T KOG1460|consen 4 KAVILVGGPQKGTRFRPLSFNVPKPLFPIA-GVPMIHHHISACKQIS---G--LAEILLVGFYEERVFTDFISAIQQEFK 77 (407)
T ss_pred EEEEEecCCCCCccccccccCCCCCccccC-CcchhhhhHHHHhccc---c--hhheeEEecccchHHHHHHHHHHhhcc
Confidence 34444466 39996 799999999995 5555565554443322 2 2223445566677777787763 3343
Q ss_pred ceEEEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcccccccCHHHHHHHhhcC
Q 006541 338 VDIHSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDNVAAVADPKIFNHLIQNQ 417 (641)
Q Consensus 338 ~~v~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~~ 417 (641)
+.| +.--+-+|.|-|.++|. .=|+.++.--+.+|+.|.|=-+...-+.+|..+...+
T Consensus 78 ~pv-----------------rYL~E~~plGtaGgLyh------FrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g 134 (407)
T KOG1460|consen 78 VPV-----------------RYLREDNPLGTAGGLYH------FRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYG 134 (407)
T ss_pred cch-----------------hhhccCCCCCcccceee------hhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcC
Confidence 321 22345689998845553 2366777778999999999988887889999999999
Q ss_pred CceEEEEeccCCCC-CcceEEEeeCCeEEEEEecCCCccccCCCCceeeeeceeeeH---HHHHHHhhcCCCccceeecc
Q 006541 418 IEYCMEVAPVPSID-LRNSLINLRPGKFQLVDITQNPTKQSGGKFKFINTRSMWVNL---RAIKRLIDTDELKVENFSSS 493 (641)
Q Consensus 418 ~~~~~evv~k~~~d-~kgG~l~~~~g~~~lvEysq~~~~~~~~~~~~fNtnni~~~l---~~l~~~~~~~~~~lp~~~n~ 493 (641)
..+.|-++.-++.+ ..-|.++.....-.++-|.+=|.-.+.+ ..|.+--.|+- ++++++.++..- +. ...
T Consensus 135 ~~~tll~tkvs~e~asnfG~lV~dP~t~evlHYveKPsTfvSd---~InCGvYlF~~eif~~i~~v~~q~~~-~~--~~~ 208 (407)
T KOG1460|consen 135 GIGTLLVTKVSREQASNFGCLVEDPSTGEVLHYVEKPSTFVSD---IINCGVYLFTPEIFNAIAEVYRQRQD-LL--EVE 208 (407)
T ss_pred CceEEEEEEecHhHhhccCeeeecCCcCceEEeecCcchhhhc---ccceeEEEecHHHHHHHHHHHHHHHh-hh--hhh
Confidence 99888877655443 2346666554555678888877755432 23555555553 455555543210 00 011
Q ss_pred ccc----CC-CCchhhhHhhhhHhhcCCCceEEEEeccccccccCCch
Q 006541 494 KEV----ND-DQIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTSD 536 (641)
Q Consensus 494 K~v----~~-~~~~qlE~~i~d~i~~f~~~~~i~V~R~rF~PvKn~~d 536 (641)
|.. ++ ...++||+-+...+.--.+-.+.+.+ +-|+.+|++--
T Consensus 209 ~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~-~fW~QiKtags 255 (407)
T KOG1460|consen 209 KDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETT-DFWSQIKTAGS 255 (407)
T ss_pred hcccccCCCccceEEeechhhhhhcCCCceEEEecc-cHHHHhccccc
Confidence 111 12 23588888666544322222222221 34778887743
No 105
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=94.96 E-value=0.024 Score=61.61 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=33.8
Q ss_pred cEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHH
Q 006541 262 KLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVES 303 (641)
Q Consensus 262 k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~ 303 (641)
.+..|+||||+|+||| .+|.++++. |+++++..++.+..
T Consensus 160 ~i~~IILAGGkSsRMG--~dKaLL~~~-GkpLl~~~ie~l~~ 198 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG--KDKALLNYQ-GQPHAQYLYDLLAK 198 (346)
T ss_pred CceEEEEeccccccCC--CCcccceeC-CccHHHHHHHHHHh
Confidence 5678999999999998 699999995 89999997766654
No 106
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=94.47 E-value=0.016 Score=64.55 Aligned_cols=40 Identities=8% Similarity=0.007 Sum_probs=36.3
Q ss_pred CCCchhhhH-hh-hhHhhcC--CCceEEEEecc-ccccccCCchh
Q 006541 498 DDQIISRGT-AA-DSAIQFF--DHTIGINVAQS-RYLPVNSTSDL 537 (641)
Q Consensus 498 ~~~~~qlE~-~i-~d~i~~f--~~~~~i~V~R~-rF~PvKn~~dl 537 (641)
+++++++|. |+ ||.|.+- ++..++.|||. ||+|+||-.+-
T Consensus 365 ~~~i~kfe~~FI~fDlF~~~s~~~~~~~~vpR~~~f~Plkn~~~~ 409 (472)
T COG4284 365 GKNISKFENEFIPFDLFLYKSDENGGLLLVPRFGEFSPLKNLEGS 409 (472)
T ss_pred ccchhhccccccceeeeEEEecCCCceEeccccCCCCchhhccCC
Confidence 689999996 99 9999999 99999999995 69999999764
No 107
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=94.24 E-value=0.36 Score=51.74 Aligned_cols=66 Identities=18% Similarity=0.243 Sum_probs=50.7
Q ss_pred EEEEEEcCCCCCCC----CCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHH
Q 006541 263 LVVVKFNGALGTNM----GFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEK 332 (641)
Q Consensus 263 ~avv~LaGGlGTrl----G~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k 332 (641)
+.-|+||||-|||| --..||-.+.+.+++|+||-+++|+..+.. .-.+++.|+..-..-+++=|++
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~----~~~~~vVtne~~~f~v~eql~e 71 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGD----IEEPLVVTNEKYRFIVKEQLPE 71 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCC----ccCeEEEeCHHHHHHHHHHHhh
Confidence 34588999999999 456799999998999999999999887653 2245566666666666666665
No 108
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=94.17 E-value=0.15 Score=57.86 Aligned_cols=185 Identities=15% Similarity=0.170 Sum_probs=103.0
Q ss_pred EEEEEEcCCCCCCCC----CCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCc
Q 006541 263 LVVVKFNGALGTNMG----FSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKV 338 (641)
Q Consensus 263 ~avv~LaGGlGTrlG----~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~ 338 (641)
+-.|.||||.||||= ...||-++++..++|+||..++++..+ +..=++ |.|+..-.+.+++-+...+....
T Consensus 6 ~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~----~~~~~i-ivt~~~~~~~v~~ql~~~~~~~~ 80 (478)
T PRK15460 6 LYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGV----ECESPV-VICNEQHRFIVAEQLRQLNKLTE 80 (478)
T ss_pred eEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhC----CCCCcE-EEeCHHHHHHHHHHHHhcCCccc
Confidence 577899999999994 235999999988899999999987653 444456 55777666666666655432110
Q ss_pred eEEEEecCCccccccCCCCCCCccccCCCChhh---HHHHHHhcChhHHHHHc--C-ceEEEEEcCcccccccC----HH
Q 006541 339 DIHSLSLSQQPHEKSFEGHSRKDKLYPSSDHSV---VFLSLMKSGTLDLLLVQ--G-KEYALVVDSDNVAAVAD----PK 408 (641)
Q Consensus 339 ~v~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~d---i~~aL~~sG~Ld~l~~~--G-~eyi~v~nvDNL~~~~D----p~ 408 (641)
.+..=|-|.++. .+.|+ .+.++ + -.-+.|...|.+..-.+ -.
T Consensus 81 ---------------------~ii~EP~~rnTApaialaa~-------~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i 132 (478)
T PRK15460 81 ---------------------NIILEPAGRNTAPAIALAAL-------AAKRHSPESDPLMLVLAADHVIADEDAFRAAV 132 (478)
T ss_pred ---------------------cEEecCCCCChHHHHHHHHH-------HHHHhcCCCCCeEEEeccccccCCHHHHHHHH
Confidence 122223333200 11222 11112 2 25678888888544322 11
Q ss_pred HHHHH-hhcCCceEEEEeccCCCCCcceEEEee---C-----CeEEEEEecCCCccccCC------CCceeeeeceeeeH
Q 006541 409 IFNHL-IQNQIEYCMEVAPVPSIDLRNSLINLR---P-----GKFQLVDITQNPTKQSGG------KFKFINTRSMWVNL 473 (641)
Q Consensus 409 ~lg~~-~~~~~~~~~evv~k~~~d~kgG~l~~~---~-----g~~~lvEysq~~~~~~~~------~~~~fNtnni~~~l 473 (641)
--+.- ++.+. ..+--++=+.|+..-|-+-.- + +-..|...-|=|+....+ .| ++|++-..++.
T Consensus 133 ~~A~~~A~~~~-lvt~GI~Pt~PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~G~y-~WNsGiF~~~a 210 (478)
T PRK15460 133 RNAMPYAEAGK-LVTFGIVPDLPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEY-YWNSGMFLFRA 210 (478)
T ss_pred HHHHHHHhcCC-EEEEecCCCCCCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHHcCCE-EEecceeheeH
Confidence 12222 22233 333333344445445555421 1 224566666666654333 33 56999999998
Q ss_pred HHHHHHhhc
Q 006541 474 RAIKRLIDT 482 (641)
Q Consensus 474 ~~l~~~~~~ 482 (641)
+.+-+.+++
T Consensus 211 ~~~l~~~~~ 219 (478)
T PRK15460 211 GRYLEELKK 219 (478)
T ss_pred HHHHHHHHH
Confidence 776666654
No 109
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=94.16 E-value=0.077 Score=54.54 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=50.5
Q ss_pred CcEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHH
Q 006541 261 DKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLE 331 (641)
Q Consensus 261 ~k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~ 331 (641)
.++.++++|+|.|||||.+.||-.+++ .|+++|...++-.+.... -=..+|.++..-++...++.+
T Consensus 3 ~~~~~vilAaG~G~R~~~~~pKq~l~l-~g~pll~~tl~~f~~~~~----i~~Ivvv~~~~~~~~~~~~~~ 68 (230)
T COG1211 3 MMVSAVILAAGFGSRMGNPVPKQYLEL-GGRPLLEHTLEAFLESPA----IDEIVVVVSPEDDPYFEKLPK 68 (230)
T ss_pred ceEEEEEEcCccccccCCCCCceEEEE-CCEEehHHHHHHHHhCcC----CCeEEEEEChhhhHHHHHhhh
Confidence 367899999999999999999999999 589999988777765332 125677777666666666654
No 110
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=92.94 E-value=2.1 Score=41.68 Aligned_cols=140 Identities=9% Similarity=0.104 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCChhHHHHHHHHHHHhCCCc----ccCCcccccCc------cccCCcchhhhhhh
Q 006541 47 LICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIGCYN----PNMNALWRMGG------FLTNSSSPKKFRSR 116 (641)
Q Consensus 47 ~~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v~~~a~~~g~~~----~~vn~rW~igG------~LTN~~~~kk~~~~ 116 (641)
...+.+|++.|.....+.++|.|+|......-+ ..++.+....+ .-....+ ..+ .+.|-.......
T Consensus 16 ~~~i~~a~~~i~~~i~~~~~I~i~G~G~S~~~A-~~~~~~l~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~-- 91 (177)
T cd05006 16 AEAIEQAAQLLAEALLNGGKILICGNGGSAADA-QHFAAELVKRFEKERPGLPAIA-LTTDTSILTAIANDYGYEEVF-- 91 (177)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHH-HHHHHHHhchhccCCCCCceEe-ccCCHHHHHHHhccCCHHHHH--
Confidence 677888999998877788999999998553321 22222221100 0001112 121 111100000000
Q ss_pred ccccccCCCCCCCeEEEeCCCcch----hHHHHHhhcCCCEEEEeCCCCCCCCCCceEEee--cCCC---hhhHHHHHHH
Q 006541 117 NKKIRFGPTKLPDCVVVLDTERKS----SVIMEAAKLQVPIVALVDSSMPLDVYSKITYPV--PGND---SVQFVYLLCN 187 (641)
Q Consensus 117 ~kk~~~g~~~~Pdlvii~d~~~~~----~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypI--P~Nd---S~~si~~i~~ 187 (641)
...........|++|+++...+. .+++.|+..|+|||+|++....| +-+..|+.| |..+ ......+++.
T Consensus 92 -~~~~~~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~-La~~aD~~l~~~~~~~~~~~~~~~~~~~ 169 (177)
T cd05006 92 -SRQVEALGQPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGK-LLELADIEIHVPSDDTPRIQEVHLLIGH 169 (177)
T ss_pred -HHHHHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCc-hhhhCCEEEEeCCCChHHHHHHHHHHHH
Confidence 00000013577999999865553 78899999999999999976544 123455544 5554 2334455555
Q ss_pred HHHHH
Q 006541 188 MITKT 192 (641)
Q Consensus 188 ll~~a 192 (641)
.|+..
T Consensus 170 ~~~~~ 174 (177)
T cd05006 170 ILCEL 174 (177)
T ss_pred HHHHH
Confidence 55443
No 111
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=92.10 E-value=3.7 Score=43.90 Aligned_cols=153 Identities=12% Similarity=0.071 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEeCChhHHHHHHHHHHHhCCCcccCCcccccCccccC-Ccchhh---hhhhc-
Q 006541 43 SDKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTN-SSSPKK---FRSRN- 117 (641)
Q Consensus 43 l~~T~~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v~~~a~~~g~~~~~vn~rW~igG~LTN-~~~~kk---~~~~~- 117 (641)
+.+.+..+.+|+..+....+++|+|.++|......-.+..+++....+-. ...+ +.|.+.. +..+.. ..+..
T Consensus 41 v~~~l~~I~~av~~~~~~l~~ggrI~~~GaGtSg~la~~da~e~~~tfg~--~~~~-v~~iiagG~~a~~~a~e~~ed~~ 117 (299)
T PRK05441 41 VEKALPQIAAAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFGV--PPEL-VVGLIAGGEKALTKAVEGAEDDA 117 (299)
T ss_pred HHHhHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhCcCccCC--Cchh-ceeeecCCcHHHHhcccccCChH
Confidence 45567778888888888889999999999988776554544444333221 1112 2333211 110000 00000
Q ss_pred ----cccccCCCCCCCeEEEeCCCcc----hhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCCC------------
Q 006541 118 ----KKIRFGPTKLPDCVVVLDTERK----SSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGND------------ 177 (641)
Q Consensus 118 ----kk~~~g~~~~Pdlvii~d~~~~----~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~Nd------------ 177 (641)
..+..-....-|++|.+..... ..+++.|+..|.|||+|++....| +-...|++|....
T Consensus 118 ~~~~~~l~~~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~-La~~aD~~I~~~~g~E~~~~st~~~ 196 (299)
T PRK05441 118 ELGAADLKAINLTAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSP-LSKEADIAIEVVVGPEVLTGSTRMK 196 (299)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCh-hhHhCCEEEEcCCCCcccccccccc
Confidence 0000001246789888886544 478999999999999999754443 1245677764331
Q ss_pred hhhHHHHHHHHHHHHHHHHhhh
Q 006541 178 SVQFVYLLCNMITKTFLVEQKK 199 (641)
Q Consensus 178 S~~si~~i~~ll~~ail~g~~~ 199 (641)
+..+..+++++|+..+..-.+.
T Consensus 197 s~taqk~iLn~lst~~~~~~gk 218 (299)
T PRK05441 197 AGTAQKLVLNMISTGVMIRLGK 218 (299)
T ss_pred chhHHHHHHHHHHHHHHHHccH
Confidence 2335777888888776555444
No 112
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=91.38 E-value=4.6 Score=40.59 Aligned_cols=140 Identities=10% Similarity=0.024 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCChhHHHHHHHHHHHhCCCc---------cc--CCcccccCccccCCcchhhhhh
Q 006541 47 LICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIGCYN---------PN--MNALWRMGGFLTNSSSPKKFRS 115 (641)
Q Consensus 47 ~~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v~~~a~~~g~~~---------~~--vn~rW~igG~LTN~~~~kk~~~ 115 (641)
...+.+|+..+.....++++|+|+|+......+ +.++.+....| +. .+.-| -...+|-.-...
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~G~GgSa~~A-~~~a~~l~~~~~~~r~gl~a~~l~~d~~~--~ta~and~~~~~--- 97 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCCGNGTSAANA-QHFAASMINRFETERPSLPAIALNTDNVV--LTAIANDRLHDE--- 97 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEECcHHHHHH-HHHHHHHhccccccCCCcceEEecCcHHH--HHHHhccccHHH---
Confidence 467889999999999999999999988764322 33333321111 00 01111 011122110000
Q ss_pred hccccccCCCCCCCeEEEeCCCcch----hHHHHHhhcCCCEEEEeCCCCCCCCCC-----ceEEeecCCC-h-hhHHHH
Q 006541 116 RNKKIRFGPTKLPDCVVVLDTERKS----SVIMEAAKLQVPIVALVDSSMPLDVYS-----KITYPVPGND-S-VQFVYL 184 (641)
Q Consensus 116 ~~kk~~~g~~~~Pdlvii~d~~~~~----~ai~EA~~l~IP~IalvDTn~~~~~~~-----~IdypIP~Nd-S-~~si~~ 184 (641)
...+..-...+..|++|+++...+. .+++.|+..|+|||+|+-...+|- -+ .+.+.||..+ + ++-+.+
T Consensus 98 ~f~~ql~~~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l-~~l~~~~D~~i~ip~~~~~~v~e~h~ 176 (196)
T PRK10886 98 VYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGEL-AGLLGPQDVEIRIPSHRSARIQEMHM 176 (196)
T ss_pred HHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChh-hhccccCCEEEEcCCCchHHHHHHHH
Confidence 0000000124678999988876553 678889999999999998655542 12 3456667665 2 333333
Q ss_pred -HHHHHHHHH
Q 006541 185 -LCNMITKTF 193 (641)
Q Consensus 185 -i~~ll~~ai 193 (641)
++.+|+..+
T Consensus 177 ~i~H~l~~~v 186 (196)
T PRK10886 177 LTVNCLCDLI 186 (196)
T ss_pred HHHHHHHHHH
Confidence 344444444
No 113
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=91.23 E-value=0.49 Score=48.54 Aligned_cols=35 Identities=6% Similarity=0.016 Sum_probs=30.5
Q ss_pred EEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHH
Q 006541 265 VVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVES 303 (641)
Q Consensus 265 vv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~ 303 (641)
+|++|+|.||||+ +|-++++ .|+++++..+++.+.
T Consensus 2 ~iIpA~g~s~R~~---~K~L~~l-~GkPli~~~le~~~~ 36 (238)
T TIGR00466 2 VIIPARLASSRLP---GKPLEDI-FGKPMIVHVAENANE 36 (238)
T ss_pred EEEecCCCCCCCC---CCeeccc-CCcCHHHHHHHHHHh
Confidence 5789999999994 8999999 589999999998754
No 114
>PRK13938 phosphoheptose isomerase; Provisional
Probab=90.84 E-value=7.4 Score=39.09 Aligned_cols=146 Identities=16% Similarity=0.093 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEeCChhHHHHHHHHHHHhCCCcccCCcccccCcc--ccCCcchhh------hhh
Q 006541 44 DKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGF--LTNSSSPKK------FRS 115 (641)
Q Consensus 44 ~~T~~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v~~~a~~~g~~~~~vn~rW~igG~--LTN~~~~kk------~~~ 115 (641)
......+..++..+....+++++|.++|......-+ +.++.+....+-+.-.+. |-. ..+-....- +.+
T Consensus 25 ~~~~~~~~~~a~~~~~~l~~g~rI~i~G~G~S~~~A-~~fa~~L~~~~~~~r~~l--g~~~l~~~~~~~~a~~nd~~~~~ 101 (196)
T PRK13938 25 RVLLEAARAIGDRLIAGYRAGARVFMCGNGGSAADA-QHFAAELTGHLIFDRPPL--GAEALHANSSHLTAVANDYDYDT 101 (196)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHH-HHHHHHcCCCccCCcCcc--ceEEEeCChHHHHHhhccccHHH
Confidence 345566777788888778899999999987775533 344444322111100011 110 000000000 000
Q ss_pred hccccccCCCCCCCeEEEeCCCcch----hHHHHHhhcCCCEEEEeCCCCCCCCCCceEE--eecCCC--hhhHHHHH-H
Q 006541 116 RNKKIRFGPTKLPDCVVVLDTERKS----SVIMEAAKLQVPIVALVDSSMPLDVYSKITY--PVPGND--SVQFVYLL-C 186 (641)
Q Consensus 116 ~~kk~~~g~~~~Pdlvii~d~~~~~----~ai~EA~~l~IP~IalvDTn~~~~~~~~Idy--pIP~Nd--S~~si~~i-~ 186 (641)
...+..-......|++|+++...+. .+++.|+..|+|||+|++...+|- -+.-|+ .+|..+ .++-+.++ +
T Consensus 102 ~~~~~~~~~~~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~L-a~~aD~~l~v~~~e~~~v~e~h~~~~ 180 (196)
T PRK13938 102 VFARALEGSARPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQL-AEFADFLINVPSRDTGRIQESHIVFI 180 (196)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChh-hhhCCEEEEeCCCchhhHHHHHHHHH
Confidence 0000011234688999999876543 788899999999999998665542 133444 556665 34544443 4
Q ss_pred HHHHHHH
Q 006541 187 NMITKTF 193 (641)
Q Consensus 187 ~ll~~ai 193 (641)
.+|+..|
T Consensus 181 h~l~~~v 187 (196)
T PRK13938 181 HAISEHV 187 (196)
T ss_pred HHHHHHH
Confidence 4444444
No 115
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=90.38 E-value=5 Score=42.84 Aligned_cols=154 Identities=11% Similarity=0.058 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEeCChhHHHHHHHHHHHhCCCcccCCcccccCccc-cCCcchhhhh-------h
Q 006541 44 DKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFL-TNSSSPKKFR-------S 115 (641)
Q Consensus 44 ~~T~~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v~~~a~~~g~~~~~vn~rW~igG~L-TN~~~~kk~~-------~ 115 (641)
......|.+|+..+....+++|+|.++|......-.+..++.....|.. ..... .|.+ ..+..+..-. .
T Consensus 38 ~~~~~~I~~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~-~~~~~--~~~iagg~~a~~~a~~~~ed~~~ 114 (296)
T PRK12570 38 EKVLPQIAQAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSV-SPEMV--IGLIAGGPEAMFTAVEGAEDDPE 114 (296)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhcC-Ccccc--eeeeecCchHhhhcccccCCcHH
Confidence 3455778888888888889999999999988765444444443333221 01111 1111 1111110000 0
Q ss_pred hc-cccccCCCCCCCeEEEeCCCcch----hHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecC---CC---------h
Q 006541 116 RN-KKIRFGPTKLPDCVVVLDTERKS----SVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPG---ND---------S 178 (641)
Q Consensus 116 ~~-kk~~~g~~~~Pdlvii~d~~~~~----~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~---Nd---------S 178 (641)
.. +.+.--....-|++|++....+. .+++.|+..|.|+|+|+.....|- -+..||.|.. .. +
T Consensus 115 ~~~~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~L-a~~aD~~I~~~~g~E~~~~st~~~s 193 (296)
T PRK12570 115 LGAQDLKAIGLTADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSPI-AKIADIAISPVVGPEVLTGSTRLKS 193 (296)
T ss_pred HHHHHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChh-HHhCCEEEeeCcCCccccccchHHH
Confidence 00 00000012466999988876664 789999999999999997655442 2467787742 11 2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhc
Q 006541 179 VQFVYLLCNMITKTFLVEQKKLG 201 (641)
Q Consensus 179 ~~si~~i~~ll~~ail~g~~~~~ 201 (641)
.-+..+++++|+..+..-.+..-
T Consensus 194 ~taqk~vLd~L~t~~~~r~Gk~~ 216 (296)
T PRK12570 194 GTAQKMVLNMLSTASMIRLGKSY 216 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcchhh
Confidence 44678888888887766655543
No 116
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=90.32 E-value=7.2 Score=40.71 Aligned_cols=152 Identities=9% Similarity=0.031 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEeCChhHHHHHHHHHHHhCCCcccCCcccccCccccC-Ccchhhhhh---h---
Q 006541 44 DKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTN-SSSPKKFRS---R--- 116 (641)
Q Consensus 44 ~~T~~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v~~~a~~~g~~~~~vn~rW~igG~LTN-~~~~kk~~~---~--- 116 (641)
.+.+..+.+|+..+....+++|++.++|......-.+.-+++...-|-. ...+ +.|.+.- +..+..-.. .
T Consensus 29 ~~~l~~I~~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~tfg~--~~~~-v~~~iagg~~a~~~a~~~~edd~~ 105 (257)
T cd05007 29 EAALPQIARAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPPTFGT--PPER-VVGLIAGGEPALTRAVEGAEDDEE 105 (257)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccccccC--Cccc-ceEEEeCCHHHHHhhccccCChHH
Confidence 3445678888888888888999999999988776554434433332211 1112 2333221 111000000 0
Q ss_pred --ccccccCCCCCCCeEEEeCCCcc----hhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCCC------------h
Q 006541 117 --NKKIRFGPTKLPDCVVVLDTERK----SSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGND------------S 178 (641)
Q Consensus 117 --~kk~~~g~~~~Pdlvii~d~~~~----~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~Nd------------S 178 (641)
...+.--....-|++|.+....+ ..+++.|++.|.|+|+|+.....|- -+..|++|.... +
T Consensus 106 ~~~~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L-~~~aD~~I~~~~g~E~~~~st~~~s 184 (257)
T cd05007 106 AGAADLQAINLTERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPL-LQLADIAIALITGPEVVAGSTRLKA 184 (257)
T ss_pred HHHHHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChh-HHhCCEEEEcCCCCccccCcccccc
Confidence 00000001246789888886554 4789999999999999997654441 234566665431 2
Q ss_pred hhHHHHHHHHHHHHHHHHhhh
Q 006541 179 VQFVYLLCNMITKTFLVEQKK 199 (641)
Q Consensus 179 ~~si~~i~~ll~~ail~g~~~ 199 (641)
..+..+++++|+..+..-.+.
T Consensus 185 ~~aqk~vLn~L~t~~~~~~g~ 205 (257)
T cd05007 185 GTAQKLALNMLSTAVMIRLGK 205 (257)
T ss_pred HHHHHHHHHHHHHHHHHHcch
Confidence 345777888888777655444
No 117
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=88.67 E-value=13 Score=39.67 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=35.0
Q ss_pred CCCCeEEEeCCCcc----hhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEee
Q 006541 126 KLPDCVVVLDTERK----SSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPV 173 (641)
Q Consensus 126 ~~Pdlvii~d~~~~----~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypI 173 (641)
...|++|+++...+ ..+++.|+..|+|||+|++...+|= -+.-||.+
T Consensus 93 ~~~d~~I~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~l-a~~ad~~l 143 (326)
T PRK10892 93 TPQDVVIAISNSGESSEILALIPVLKRLHVPLICITGRPESSM-ARAADIHL 143 (326)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCcc-cccCCEEE
Confidence 46789888886544 4789999999999999999876552 24555554
No 118
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=88.54 E-value=5.9 Score=41.23 Aligned_cols=48 Identities=8% Similarity=0.025 Sum_probs=37.3
Q ss_pred CCCCeEEEeCCCcch----hHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeec
Q 006541 126 KLPDCVVVLDTERKS----SVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVP 174 (641)
Q Consensus 126 ~~Pdlvii~d~~~~~----~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP 174 (641)
...|++|+++...+. .+++.|++.|+|||+|+|...+|- -+..|+.++
T Consensus 174 ~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~l-a~~ad~~l~ 225 (278)
T PRK11557 174 SPDDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTPNAL-QQRASHCLY 225 (278)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCCch-HHhCCEEEE
Confidence 578999998865543 678999999999999999876663 245677775
No 119
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=88.17 E-value=5 Score=38.97 Aligned_cols=47 Identities=13% Similarity=0.108 Sum_probs=33.8
Q ss_pred CCCCeEEEeCCCcc----hhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEee
Q 006541 126 KLPDCVVVLDTERK----SSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPV 173 (641)
Q Consensus 126 ~~Pdlvii~d~~~~----~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypI 173 (641)
..-|++|+++-..+ ..+++.|+..|+|||+|+|....|- -+..|+.+
T Consensus 71 ~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~l-a~~ad~~l 121 (179)
T TIGR03127 71 KKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPESTL-GKLADVVV 121 (179)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCch-HHhCCEEE
Confidence 56789888885543 3677779999999999999766552 23455544
No 120
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=87.96 E-value=15 Score=36.62 Aligned_cols=124 Identities=7% Similarity=-0.004 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCChhHHHHHHHHHHHhCCCcccCCcccccCccc----cCCcchhhh------hh
Q 006541 46 TLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFL----TNSSSPKKF------RS 115 (641)
Q Consensus 46 T~~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v~~~a~~~g~~~~~vn~rW~igG~L----TN~~~~kk~------~~ 115 (641)
-...|.+|+..|..-..++++|.++|......-+ +.+|...-..+ ++...|.- +++...... ..
T Consensus 26 ~~~~i~~a~~~i~~al~~~~rI~i~G~G~S~~~A-~~~a~~l~~~~-----~~~r~g~~~~~~~d~~~~~~~~~d~~~~~ 99 (192)
T PRK00414 26 NIHAIQRAAVLIADSFKAGGKVLSCGNGGSHCDA-MHFAEELTGRY-----RENRPGYPAIAISDVSHLSCVSNDFGYDY 99 (192)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHH-HHHHHHhcccc-----cCCCCCceEEecCcHHHHhhhhccCCHHH
Confidence 3467899999999999999999999987764422 23332221100 00001111 111100000 00
Q ss_pred hccccccCCCCCCCeEEEeCCCcc----hhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCC
Q 006541 116 RNKKIRFGPTKLPDCVVVLDTERK----SSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGN 176 (641)
Q Consensus 116 ~~kk~~~g~~~~Pdlvii~d~~~~----~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~N 176 (641)
...+..-...+..|++|+++...+ ..+++.|++.|+|||+|+....+|- -+..|+.|...
T Consensus 100 ~~~~~~~~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l-~~~ad~~l~~~ 163 (192)
T PRK00414 100 VFSRYVEAVGREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKM-AGLADIEIRVP 163 (192)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChh-HHhCCEEEEeC
Confidence 000000011357799998886644 3788899999999999998654441 13445555443
No 121
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=87.92 E-value=5.7 Score=38.67 Aligned_cols=51 Identities=10% Similarity=0.089 Sum_probs=36.4
Q ss_pred CCCCeEEEeCCCcch----hHHHHHhhcCCCEEEEeCCCCCCCCCCceE--EeecCCC
Q 006541 126 KLPDCVVVLDTERKS----SVIMEAAKLQVPIVALVDSSMPLDVYSKIT--YPVPGND 177 (641)
Q Consensus 126 ~~Pdlvii~d~~~~~----~ai~EA~~l~IP~IalvDTn~~~~~~~~Id--ypIP~Nd 177 (641)
..-|++|+++...+. .+++.|+..|+|+|+|+|+...|- -+.-| +.+|.+.
T Consensus 74 ~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~l-a~~ad~~l~~~~~~ 130 (179)
T cd05005 74 GPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPL-AKLADVVVVIPAAT 130 (179)
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCch-HHhCCEEEEeCCcc
Confidence 467888888865543 678889999999999999876652 12334 4556653
No 122
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=87.51 E-value=5.4 Score=37.41 Aligned_cols=108 Identities=11% Similarity=0.101 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCChhHHHHHHHHHHHhCCCcccCCcccccCccccCCcchhhhh---hh---cccc
Q 006541 47 LICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFR---SR---NKKI 120 (641)
Q Consensus 47 ~~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v~~~a~~~g~~~~~vn~rW~igG~LTN~~~~kk~~---~~---~kk~ 120 (641)
...+.+|+..+....+++|+|.++|+....... ..++.+.+..+. ..++..+.+..+-....... .+ .-+.
T Consensus 18 ~~~i~~aa~~i~~~~~~gg~i~~~G~G~S~~~a-~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 94 (138)
T PF13580_consen 18 AEAIEKAADLIAEALRNGGRIFVCGNGHSAAIA-SHFAADLGGLFG--VNRILLPAIALNDDALTAISNDLEYDEGFARQ 94 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEEESTHHHHHH-HHHHHHHHCHSS--STSSS-SEEETTSTHHHHHHHHTTGGGTHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCchhhhHH-HHHHHHHhcCcC--CCcccccccccccchHhhhhcccchhhHHHHH
Confidence 567889999999999999999999998775433 344444443332 12332233322221100000 00 0000
Q ss_pred ccC--CCCCCCeEEEeCCCcch----hHHHHHhhcCCCEEEEe
Q 006541 121 RFG--PTKLPDCVVVLDTERKS----SVIMEAAKLQVPIVALV 157 (641)
Q Consensus 121 ~~g--~~~~Pdlvii~d~~~~~----~ai~EA~~l~IP~Ialv 157 (641)
... ..+.-|++|+++..-+. .|+++|++.|.+||||.
T Consensus 95 ~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 95 LLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp HHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 000 14688999988876554 68899999999999985
No 123
>PRK13936 phosphoheptose isomerase; Provisional
Probab=87.10 E-value=8.7 Score=38.36 Aligned_cols=127 Identities=14% Similarity=0.091 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCChhHH---HHHHHHHHHhCCCcccCCcccccCcccc--------------CCcc
Q 006541 47 LICLRNACHFISLLARQRAAFMFVNTNPLFD---EIVLQMTQKIGCYNPNMNALWRMGGFLT--------------NSSS 109 (641)
Q Consensus 47 ~~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~---~~v~~~a~~~g~~~~~vn~rW~igG~LT--------------N~~~ 109 (641)
...+.+|+..+.....++++|.+.|...... .+..++..+.|.. -.|.-. |-..
T Consensus 26 ~~~i~~a~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~r~~~~---------r~g~~~~~~~~~~~~~~~~~~d~~ 96 (197)
T PRK13936 26 APPIAQAVELMVQALLNEGKILACGNGGSAADAQHFSAELLNRFERE---------RPSLPAIALTTDTSTLTAIANDYS 96 (197)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHccCccCCC---------CccceeEecCCcHHHHHHHhhcCC
Confidence 3556788889999989999999999876543 2222333222210 012211 1000
Q ss_pred hhhhhhhccccccCCCCCCCeEEEeCCCcch----hHHHHHhhcCCCEEEEeCCCCCCCCC----CceEEeecCCC-h-h
Q 006541 110 PKKFRSRNKKIRFGPTKLPDCVVVLDTERKS----SVIMEAAKLQVPIVALVDSSMPLDVY----SKITYPVPGND-S-V 179 (641)
Q Consensus 110 ~kk~~~~~kk~~~g~~~~Pdlvii~d~~~~~----~ai~EA~~l~IP~IalvDTn~~~~~~----~~IdypIP~Nd-S-~ 179 (641)
.... .-+..-...+.-|++|+++...+. .+++.|++.|+|+|+|++.+.+|-.. ..+.+.+|..+ . +
T Consensus 97 ~~~~---~~~~~a~~~~~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~~~~~~~~ 173 (197)
T PRK13936 97 YNEV---FSKQVRALGQPGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVPAERTARI 173 (197)
T ss_pred HHHH---HHHHHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeCCCcHHHH
Confidence 0000 000000012467998888866544 47888999999999999966554210 12345556555 2 3
Q ss_pred hHHHHH
Q 006541 180 QFVYLL 185 (641)
Q Consensus 180 ~si~~i 185 (641)
..+.++
T Consensus 174 ~e~~~~ 179 (197)
T PRK13936 174 QEVHLL 179 (197)
T ss_pred HHHHHH
Confidence 444433
No 124
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=86.71 E-value=19 Score=34.43 Aligned_cols=51 Identities=14% Similarity=0.034 Sum_probs=36.0
Q ss_pred CCCCeEEEeCCCcc----hhHHHHHhhcCCCEEEEeCCCCCCCCCCceE--EeecCCC
Q 006541 126 KLPDCVVVLDTERK----SSVIMEAAKLQVPIVALVDSSMPLDVYSKIT--YPVPGND 177 (641)
Q Consensus 126 ~~Pdlvii~d~~~~----~~ai~EA~~l~IP~IalvDTn~~~~~~~~Id--ypIP~Nd 177 (641)
+..|++|+++...+ ..+++.|++.|+|+|+|++...+|- -+.-| +.+|..+
T Consensus 78 ~~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l-~~~ad~~l~~~~~~ 134 (154)
T TIGR00441 78 QKGDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKM-AGLADIELRVPHFY 134 (154)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCch-hhhCCEEEEeCCCC
Confidence 56789888886554 3778889999999999999655442 13444 4455555
No 125
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=86.67 E-value=1.8 Score=43.72 Aligned_cols=60 Identities=10% Similarity=0.113 Sum_probs=41.4
Q ss_pred EEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccc-hHHHHHHHHH
Q 006541 265 VVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAET-HDRVQKVLEK 332 (641)
Q Consensus 265 vv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T-~~~T~~~l~k 332 (641)
++.||||.++||| +|.++++. |+++++..++.+... +.--..++-++..- ++...+++.+
T Consensus 2 aiIlA~G~S~R~~---~K~ll~l~-Gkpli~~~i~~l~~~----~~~~~ivVv~~~~~~~~~i~~~~~~ 62 (233)
T cd02518 2 AIIQARMGSTRLP---GKVLKPLG-GKPLLEHLLDRLKRS----KLIDEIVIATSTNEEDDPLEALAKK 62 (233)
T ss_pred EEEeeCCCCCCCC---CCcccccC-CccHHHHHHHHHHhC----CCCCeEEEECCCCcccHHHHHHHHH
Confidence 4789999999996 59999984 799999888877642 11124555555443 2556666653
No 126
>PRK15482 transcriptional regulator MurR; Provisional
Probab=86.19 E-value=9.7 Score=39.95 Aligned_cols=49 Identities=10% Similarity=0.046 Sum_probs=36.0
Q ss_pred CCCCeEEEeCCCcch----hHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecC
Q 006541 126 KLPDCVVVLDTERKS----SVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPG 175 (641)
Q Consensus 126 ~~Pdlvii~d~~~~~----~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~ 175 (641)
..-|++|+++-..+. .+++.|+..|+|||+|+|+..+|- -...|+.|+.
T Consensus 181 ~~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~l-a~~ad~~l~~ 233 (285)
T PRK15482 181 KKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPL-RRLAHFTLDT 233 (285)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCch-HHhCCEEEEc
Confidence 456898888865553 788889999999999999876652 2455665543
No 127
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=85.26 E-value=17 Score=38.78 Aligned_cols=155 Identities=12% Similarity=0.108 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEeCChhHHHHHHHHH---HHhCCCcccCCcccccCc---cccCCcchhhhhhh
Q 006541 43 SDKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMT---QKIGCYNPNMNALWRMGG---FLTNSSSPKKFRSR 116 (641)
Q Consensus 43 l~~T~~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v~~~a---~~~g~~~~~vn~rW~igG---~LTN~~~~kk~~~~ 116 (641)
+...+..+.+|+..+....+++|+|.|+|......-.+..++ -+.|..+..+.+-. .|| ++++..........
T Consensus 36 v~~~l~~I~~av~~~~~~l~~gGrl~~~G~G~Sg~l~~~DA~e~~~t~g~~~~~~~~~i-aGg~~a~~~~~e~~Ed~~~~ 114 (291)
T TIGR00274 36 IESVLPDIAAAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSPELVKGII-AGGECAILHAVEGAEDSTEA 114 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhhhcCCCHHHhhHHh-cCChHHHhccchhhhcchHH
Confidence 344566777888888877789999999999876543333332 23333221001111 222 11111111000000
Q ss_pred ccc-cccCCCCCCCeEEEeCCCcch----hHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCC---C---------hh
Q 006541 117 NKK-IRFGPTKLPDCVVVLDTERKS----SVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGN---D---------SV 179 (641)
Q Consensus 117 ~kk-~~~g~~~~Pdlvii~d~~~~~----~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~N---d---------S~ 179 (641)
... +.......-|++|++....+. .+++.|++.|.|+|+|+.....+ +.+..|+.|... . |.
T Consensus 115 ~~~dl~~~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~-La~~aD~~I~~~~g~E~~~~st~~~s~ 193 (291)
T TIGR00274 115 GANDLQNIHLTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSA-ASEIADIAIETIVGPEILTGSSRLKAG 193 (291)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCh-hHHhCCEEEecCCCCccccccchhhHH
Confidence 000 000123467998888866553 78899999999999998644333 124566666542 1 34
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q 006541 180 QFVYLLCNMITKTFLVEQKK 199 (641)
Q Consensus 180 ~si~~i~~ll~~ail~g~~~ 199 (641)
-+..+++++|+..+..-.+.
T Consensus 194 ~aqk~iLd~L~t~~~~~~gk 213 (291)
T TIGR00274 194 TAQKMVLNMLSTASMIKLGK 213 (291)
T ss_pred HHHHHHHHHHHHHHHHhcch
Confidence 45677888888777555444
No 128
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=84.86 E-value=12 Score=38.98 Aligned_cols=71 Identities=14% Similarity=0.214 Sum_probs=46.4
Q ss_pred CCCCeEEEeCCCcc----hhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCC--C---------hhhHHHHHHHHHH
Q 006541 126 KLPDCVVVLDTERK----SSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGN--D---------SVQFVYLLCNMIT 190 (641)
Q Consensus 126 ~~Pdlvii~d~~~~----~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~N--d---------S~~si~~i~~ll~ 190 (641)
..-|++|+++.... ..+++.|++.|.|||+|++.+++.. ...|+.|+.. . |.-+..+++.+|.
T Consensus 174 ~~~D~vI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~~~s~l~--~~ad~~l~~~~~~~~~~~~~~~s~~~~~~l~d~L~ 251 (284)
T PRK11302 174 SDGDVVVLISHTGRTKSLVELAQLARENGATVIAITSAGSPLA--REATLALTLDVPEDTDIYMPMVSRIAQLTVIDVLA 251 (284)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEECCCCChhH--HhCCEEEecCCCccchhcchHHHHHHHHHHHHHHH
Confidence 46689888885554 3688899999999999999666554 4556666433 1 1122344566666
Q ss_pred HHHHHHhh
Q 006541 191 KTFLVEQK 198 (641)
Q Consensus 191 ~ail~g~~ 198 (641)
..+..-++
T Consensus 252 ~~l~~~~~ 259 (284)
T PRK11302 252 TGFTLRRG 259 (284)
T ss_pred HHHHHHhh
Confidence 66654443
No 129
>PRK13937 phosphoheptose isomerase; Provisional
Probab=84.82 E-value=43 Score=33.08 Aligned_cols=125 Identities=9% Similarity=0.041 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCChhHHHHHHHHHHHhCCCcccCCcccccCccccCC-----cchhhhh-h-----
Q 006541 47 LICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNS-----SSPKKFR-S----- 115 (641)
Q Consensus 47 ~~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v~~~a~~~g~~~~~vn~rW~igG~LTN~-----~~~kk~~-~----- 115 (641)
...|.+|+.-+.....++++|.|+|......-+ ..+|......+. - .+ .|.-... ....-.. +
T Consensus 21 ~~~l~~aa~~i~~~l~~a~rI~i~G~G~S~~~A-~~~a~~~~~~~~--~--~r-~g~~~~~~~~d~~~~~~~~~d~~~~~ 94 (188)
T PRK13937 21 LEAIAKVAEALIEALANGGKILLCGNGGSAADA-QHIAAELVGRFK--K--ER-PALPAIALTTDTSALTAIGNDYGFER 94 (188)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHhHHHH-HHHHHHhhcccc--C--CC-CCcceEeccCcHHHHHHHhccCCHHH
Confidence 467888888888888999999999998765322 112221111110 0 11 2222211 1000000 0
Q ss_pred hccccccCCCCCCCeEEEeCCCcc----hhHHHHHhhcCCCEEEEeCCCCCC-CCCCceEEeecCCC
Q 006541 116 RNKKIRFGPTKLPDCVVVLDTERK----SSVIMEAAKLQVPIVALVDSSMPL-DVYSKITYPVPGND 177 (641)
Q Consensus 116 ~~kk~~~g~~~~Pdlvii~d~~~~----~~ai~EA~~l~IP~IalvDTn~~~-~~~~~IdypIP~Nd 177 (641)
...+......+..|++|+++...+ ..+++.|++.|+|||+|++....| .....+.+.+|..+
T Consensus 95 ~~~~~~~~~~~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~~~~e 161 (188)
T PRK13937 95 VFSRQVEALGRPGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIVPSDD 161 (188)
T ss_pred HHHHHHHhhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCCCC
Confidence 000000011356799888885544 368889999999999999865443 21123444555554
No 130
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=84.08 E-value=0.78 Score=45.92 Aligned_cols=37 Identities=24% Similarity=0.421 Sum_probs=29.3
Q ss_pred EEEEcCCCCCCC---CCCCCCeeeecCCCCChHHHHHHHHH
Q 006541 265 VVKFNGALGTNM---GFSGPKSAIEVKNNLTPLDLMVDQVE 302 (641)
Q Consensus 265 vv~LaGGlGTrl---G~~~pK~~l~v~~~~tfldl~~~qi~ 302 (641)
.+.||.|+|||+ -++-||+++.| .|+.+++-+++|++
T Consensus 3 AIIlAAG~gsR~~plT~~tpK~LlkV-~g~plIErqI~~L~ 42 (231)
T COG4750 3 AIILAAGLGSRFVPLTQSTPKSLLKV-NGEPLIERQIEQLR 42 (231)
T ss_pred eEEEecccccccccccccCChHHHHh-cCcccHHHHHHHHH
Confidence 578999999998 58889999999 57888885444444
No 131
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=82.40 E-value=1.9 Score=43.44 Aligned_cols=117 Identities=13% Similarity=0.124 Sum_probs=70.3
Q ss_pred CcEEEEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceE
Q 006541 261 DKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDI 340 (641)
Q Consensus 261 ~k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v 340 (641)
.+++.|.||-|.||||| .+|-+.|+ .|++.+...+++... ..-=-.++-|+....+.-...+.. .+
T Consensus 4 ~~v~~VvLAAGrssRmG--~~KlLap~-~g~plv~~~~~~a~~-----a~~~~vivV~g~~~~~~~~a~~~~-----~~- 69 (199)
T COG2068 4 STVAAVVLAAGRSSRMG--QPKLLAPL-DGKPLVRASAETALS-----AGLDRVIVVTGHRVAEAVEALLAQ-----LG- 69 (199)
T ss_pred cceEEEEEcccccccCC--Ccceeccc-CCCcHHHHHHHHHHh-----cCCCeEEEEeCcchhhHHHhhhcc-----CC-
Confidence 57899999999999999 89999999 699999988888764 111145677776632222222221 11
Q ss_pred EEEecCCccccccCCCCCCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcc-cccccCHHHHHHH
Q 006541 341 HSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVADPKIFNHL 413 (641)
Q Consensus 341 ~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~Dp~~lg~~ 413 (641)
-....+|+=.= ++-+||..- +..+-+.+ ..+++..-|= .....+..-+...
T Consensus 70 ------------------~~~v~npd~~~-Gls~Sl~ag--~~a~~~~~-~~v~~~lgDmP~V~~~t~~rl~~~ 121 (199)
T COG2068 70 ------------------VTVVVNPDYAQ-GLSTSLKAG--LRAADAEG-DGVVLMLGDMPQVTPATVRRLIAA 121 (199)
T ss_pred ------------------eEEEeCcchhh-hHhHHHHHH--HHhcccCC-CeEEEEeCCCCCCCHHHHHHHHHh
Confidence 11222333222 344444331 23333333 5888888888 6666666554443
No 132
>PRK02947 hypothetical protein; Provisional
Probab=82.36 E-value=33 Score=35.49 Aligned_cols=110 Identities=12% Similarity=0.169 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCChhHHHHHHHHHHHhCCCcccCCcccccCccccCCcchh-----hhhhhccc-cc
Q 006541 48 ICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPK-----KFRSRNKK-IR 121 (641)
Q Consensus 48 ~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v~~~a~~~g~~~~~vn~rW~igG~LTN~~~~k-----k~~~~~kk-~~ 121 (641)
..+.+|+..+.....++++|.|+|......- ...+..+.+.... ...-+ .+..++.-.... ........ ..
T Consensus 24 e~i~~aa~lla~~i~~a~~I~i~G~G~S~~v-A~~~~~rlg~~~~-~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (246)
T PRK02947 24 EAIEKAADLIADSIRNGGLIYVFGTGHSHIL-AEEVFYRAGGLAP-VNPIL-EPSLMLHEGAVASSYLERVEGYAKAILD 100 (246)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcHHHHH-HHHhccccccCcc-cCCCC-CHHHhccccHHHHHHhhhcccHHHHHHH
Confidence 5688999999999899999999998865432 2344444332110 00001 111111100000 00000000 00
Q ss_pred cCCCCCCCeEEEeCCCcch----hHHHHHhhcCCCEEEEeCCC
Q 006541 122 FGPTKLPDCVVVLDTERKS----SVIMEAAKLQVPIVALVDSS 160 (641)
Q Consensus 122 ~g~~~~Pdlvii~d~~~~~----~ai~EA~~l~IP~IalvDTn 160 (641)
......-|++|+++...+. .++++|++.|+|+|+|++..
T Consensus 101 ~~~~~~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~ 143 (246)
T PRK02947 101 RYDIRPGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLA 143 (246)
T ss_pred HcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 0123577999999866553 57889999999999999975
No 133
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=79.05 E-value=16 Score=32.97 Aligned_cols=49 Identities=10% Similarity=0.091 Sum_probs=35.7
Q ss_pred CCCCeEEEeCCCcc----hhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecC
Q 006541 126 KLPDCVVVLDTERK----SSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPG 175 (641)
Q Consensus 126 ~~Pdlvii~d~~~~----~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~ 175 (641)
..-|++|+++-..+ ..+++.|+..|+|||+|++....|- -+.-|+.|.+
T Consensus 46 ~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~l-a~~ad~~l~~ 98 (128)
T cd05014 46 TPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTL-AKLSDVVLDL 98 (128)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCch-hhhCCEEEEC
Confidence 46689888885544 3788999999999999999754442 2456666643
No 134
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=78.44 E-value=20 Score=32.15 Aligned_cols=50 Identities=12% Similarity=0.040 Sum_probs=36.5
Q ss_pred CCCCeEEEeCCCcch----hHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCC
Q 006541 126 KLPDCVVVLDTERKS----SVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGN 176 (641)
Q Consensus 126 ~~Pdlvii~d~~~~~----~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~N 176 (641)
...|++|+++...+. .+++.|+..|+++|++++...++- -+..|+.|+..
T Consensus 59 ~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l-~~~~d~~i~~~ 112 (139)
T cd05013 59 TPGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPL-AKLADIVLLVS 112 (139)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChh-HHhcCEEEEcC
Confidence 467899999876653 477889999999999999766542 13456666544
No 135
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=77.71 E-value=17 Score=38.09 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=34.2
Q ss_pred CCCCeEEEeCCCcc----hhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEee
Q 006541 126 KLPDCVVVLDTERK----SSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPV 173 (641)
Q Consensus 126 ~~Pdlvii~d~~~~----~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypI 173 (641)
..-|++|+++-..+ ..+++.|+..|+|||+|+|...+|- -...|+.|
T Consensus 186 ~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~l-a~~ad~~l 236 (292)
T PRK11337 186 QEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPI-AKLADYVI 236 (292)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChh-HHhCCEEE
Confidence 57888888875543 3677888999999999999887762 13345544
No 136
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=76.09 E-value=35 Score=35.05 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=35.4
Q ss_pred CCCCeEEEeCCCcc----hhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeec
Q 006541 126 KLPDCVVVLDTERK----SSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVP 174 (641)
Q Consensus 126 ~~Pdlvii~d~~~~----~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP 174 (641)
..-|++|+++...+ ..+++.|+..|+|||+|++...++= -...|+.|.
T Consensus 46 ~~~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l-~~~~d~~l~ 97 (268)
T TIGR00393 46 EPNDVVLMISYSGESLELLNLIPHLKRLSHKIIAFTGSPNSSL-ARAADYVLD 97 (268)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCCcc-cccCCEEEE
Confidence 46789999886544 3788999999999999999765552 134566554
No 137
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=75.57 E-value=10 Score=33.42 Aligned_cols=74 Identities=20% Similarity=0.160 Sum_probs=48.6
Q ss_pred eEEEEeCChhHHHHHHHHHHHhCCCcccCCccccc---CccccCCcchhhhhhhccccccCCCCCCCeEEEeCCCcch--
Q 006541 66 AFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRM---GGFLTNSSSPKKFRSRNKKIRFGPTKLPDCVVVLDTERKS-- 140 (641)
Q Consensus 66 ~ILfV~T~~~~~~~v~~~a~~~g~~~~~vn~rW~i---gG~LTN~~~~kk~~~~~kk~~~g~~~~Pdlvii~d~~~~~-- 140 (641)
+||+||-......-++..+++.|...+ | . +|.-.+...+. ...+.+|+||++--.-++
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~-----~-hg~~~~~~~~~~~l~-----------~~i~~aD~VIv~t~~vsH~~ 63 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLI-----H-HGRDGGDEKKASRLP-----------SKIKKADLVIVFTDYVSHNA 63 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEE-----E-EecCCCCccchhHHH-----------HhcCCCCEEEEEeCCcChHH
Confidence 589999977777778888999998764 5 3 23222211111 114688998776544443
Q ss_pred --hHHHHHhhcCCCEEEE
Q 006541 141 --SVIMEAAKLQVPIVAL 156 (641)
Q Consensus 141 --~ai~EA~~l~IP~Ial 156 (641)
.+-++|++.+||++-.
T Consensus 64 ~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 64 MWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHHHHHHHHcCCcEEEE
Confidence 5677889999999654
No 138
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=74.91 E-value=9.4 Score=38.79 Aligned_cols=35 Identities=3% Similarity=-0.075 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCCCCCeeeecCCCCChHHHHHHHHHH
Q 006541 265 VVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVES 303 (641)
Q Consensus 265 vv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~ 303 (641)
++.+|.|.++||+ .|-+.++. |+++++..+++...
T Consensus 2 aiIpArG~Skr~~---~Knl~~l~-GkpLi~~ti~~a~~ 36 (222)
T TIGR03584 2 AIIPARGGSKRIP---RKNIKPFC-GKPMIAYSIEAALN 36 (222)
T ss_pred EEEccCCCCCCCC---CccchhcC-CcCHHHHHHHHHHh
Confidence 4678899999995 58888885 89999999998765
No 139
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=74.76 E-value=20 Score=42.26 Aligned_cols=49 Identities=18% Similarity=0.288 Sum_probs=37.6
Q ss_pred CCCCeEEEeCCCcc----hhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCC
Q 006541 126 KLPDCVVVLDTERK----SSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGN 176 (641)
Q Consensus 126 ~~Pdlvii~d~~~~----~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~N 176 (641)
..-|++|+++...+ ..+++.|++.|+|||+|+|.+++.. ...|+.++..
T Consensus 514 ~~~DvvI~iS~sG~t~e~i~~~~~Ak~~Ga~vIaIT~~~spLa--~~aD~~L~~~ 566 (638)
T PRK14101 514 GKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLA--KRATVALETD 566 (638)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEcCCCChhH--hhCCEEEEcC
Confidence 56688888886554 3788889999999999999866654 5677777654
No 140
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=69.26 E-value=76 Score=34.25 Aligned_cols=75 Identities=16% Similarity=0.082 Sum_probs=46.5
Q ss_pred CCCCeEEEeCCCcc----hhHHHHHhhcCCCEEEEeCCCCCCCCC----CceEEeecCCC-hhhHHHHHHHHHHHHHHHH
Q 006541 126 KLPDCVVVLDTERK----SSVIMEAAKLQVPIVALVDSSMPLDVY----SKITYPVPGND-SVQFVYLLCNMITKTFLVE 196 (641)
Q Consensus 126 ~~Pdlvii~d~~~~----~~ai~EA~~l~IP~IalvDTn~~~~~~----~~IdypIP~Nd-S~~si~~i~~ll~~ail~g 196 (641)
..-|++|+++..-+ ..+++.|++.|+|+|++++. .+.... ..-.++||++. +..+..+++..+ -.++..
T Consensus 77 ~~~dlvI~iS~SG~T~e~~~a~~~a~~~ga~vIaIT~~-~~L~~~a~~~~~~~i~ip~~~~~r~s~~~ll~~l-~~~l~~ 154 (337)
T PRK08674 77 DEKTLVIAVSYSGNTEETLSAVEQALKRGAKIIAITSG-GKLKEMAKEHGLPVIIVPGGYQPRAALGYLFTPL-LKILEK 154 (337)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHCCCeEEEECCC-chHHHHHHhcCCeEEEeCCCCcchhhHHHHHHHH-HHHHHH
Confidence 45688888886555 37788999999999999974 333200 01267888887 444444443333 345555
Q ss_pred hhhhcC
Q 006541 197 QKKLGL 202 (641)
Q Consensus 197 ~~~~~~ 202 (641)
.+....
T Consensus 155 ~Gl~~~ 160 (337)
T PRK08674 155 LGLIPD 160 (337)
T ss_pred cCCCcc
Confidence 555443
No 141
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=68.25 E-value=41 Score=35.69 Aligned_cols=47 Identities=6% Similarity=0.036 Sum_probs=35.4
Q ss_pred CCCCeEEEeCCCcc----hhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEee
Q 006541 126 KLPDCVVVLDTERK----SSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPV 173 (641)
Q Consensus 126 ~~Pdlvii~d~~~~----~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypI 173 (641)
...|++|+++...+ ..+++.|+..|+|||+|++...+|- -+.-|+.+
T Consensus 88 ~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~l-a~~ad~~l 138 (321)
T PRK11543 88 ESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPL-GLAAKAVL 138 (321)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEECCCCChh-HHhCCEEE
Confidence 57799999886655 3788999999999999999765542 24555655
No 142
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=62.22 E-value=25 Score=31.54 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=34.4
Q ss_pred CCCeEEEeCCCcc----hhHHHHHhhcCCCEEEEeCCCCCCCCCCce--EEeecCCC
Q 006541 127 LPDCVVVLDTERK----SSVIMEAAKLQVPIVALVDSSMPLDVYSKI--TYPVPGND 177 (641)
Q Consensus 127 ~Pdlvii~d~~~~----~~ai~EA~~l~IP~IalvDTn~~~~~~~~I--dypIP~Nd 177 (641)
.=|++|++....+ ..++++|++.|.|+|+|++...+|- -+.. .+.+|.++
T Consensus 53 ~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l-~~~ad~~l~~~~~~ 108 (131)
T PF01380_consen 53 PDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPL-ARLADIVLYIPTGE 108 (131)
T ss_dssp TTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHH-HHHSSEEEEEESSC
T ss_pred ccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCch-hhhCCEEEEecCCC
Confidence 3477887775544 3788899999999999998766542 1334 45555554
No 143
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=62.17 E-value=1.3e+02 Score=27.67 Aligned_cols=114 Identities=14% Similarity=0.170 Sum_probs=60.3
Q ss_pred cCCeEEEEeCChhH---HHHHHHHHHHhCCC-cccCCcccccCccccCCcchhhhhhhccccccCCCCCCCeEEEeCCCc
Q 006541 63 QRAAFMFVNTNPLF---DEIVLQMTQKIGCY-NPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKLPDCVVVLDTER 138 (641)
Q Consensus 63 ~~g~ILfV~T~~~~---~~~v~~~a~~~g~~-~~~vn~rW~igG~LTN~~~~kk~~~~~kk~~~g~~~~Pdlvii~d~~~ 138 (641)
+-.+|.|+|..... .+.-.++.+..+.. ..+..+.| ..|...+- ..-+++|++++..
T Consensus 12 ~~~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~-~hg~~~~~------------------~~~~~vi~is~~g 72 (153)
T cd05009 12 EAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEF-KHGPIALV------------------DEGTPVIFLAPED 72 (153)
T ss_pred ccCcEEEEcCCCCHHHHHHHHHHHHHHHhhcceeccHHHh-ccChhhhc------------------cCCCcEEEEecCC
Confidence 45889999987643 33333444333211 11123445 34433322 3456777777543
Q ss_pred c-----hhHHHHHhhcCCCEEEEeCCCCCCCCCCceEE--eecCC-C--hhhHHHHHHHHHHHHHHHHhh
Q 006541 139 K-----SSVIMEAAKLQVPIVALVDSSMPLDVYSKITY--PVPGN-D--SVQFVYLLCNMITKTFLVEQK 198 (641)
Q Consensus 139 ~-----~~ai~EA~~l~IP~IalvDTn~~~~~~~~Idy--pIP~N-d--S~~si~~i~~ll~~ail~g~~ 198 (641)
. ..+++.+++.|.|+|+|.+...+. ...|+ .+|.= + +.-.....+++++..+...++
T Consensus 73 ~t~~~~~~~~~~~~~~~~~vi~it~~~~s~---~~~d~~i~~~~~~~~~~~~~~~~~~q~la~~~a~~~g 139 (153)
T cd05009 73 RLEEKLESLIKEVKARGAKVIVITDDGDAK---DLADVVIRVPATVEELSPLLYIVPLQLLAYHLAVARG 139 (153)
T ss_pred hhHHHHHHHHHHHHHcCCEEEEEecCCccc---ccCCeEEECCCCchhHHHHHHHHHHHHHHHHHHHHcC
Confidence 2 257888899999999998876431 12333 44432 1 333334445666655554433
No 144
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=61.61 E-value=1.3e+02 Score=32.55 Aligned_cols=50 Identities=8% Similarity=-0.028 Sum_probs=37.0
Q ss_pred CCCeEEEeCCCcc----hhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCCC
Q 006541 127 LPDCVVVLDTERK----SSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGND 177 (641)
Q Consensus 127 ~Pdlvii~d~~~~----~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~Nd 177 (641)
.-+++|.++..-+ ..+++.|++.|.|||+|++...+| +-+..||.|+.+-
T Consensus 92 ~~~lvI~iS~SGeT~e~i~al~~ak~~Ga~~I~IT~~~~S~-L~~~ad~~l~~~a 145 (340)
T PRK11382 92 DRCAVIGVSDYGKTEEVIKALELGRACGALTAAFTKRADSP-ITSAAEFSIDYQA 145 (340)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEECCCCCh-HHHhCCEEEEeCC
Confidence 4477888876544 378888999999999999875544 1246788888883
No 145
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=59.26 E-value=26 Score=35.40 Aligned_cols=47 Identities=17% Similarity=0.262 Sum_probs=33.8
Q ss_pred CCCCeEEEeCCCcchhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCC
Q 006541 126 KLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGN 176 (641)
Q Consensus 126 ~~Pdlvii~d~~~~~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~N 176 (641)
..+|.+|+.+...+..+++++...|||+|.+ |++.+-. ...|.-+-|
T Consensus 63 ~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~---~~~~V~~d~ 109 (275)
T cd06295 63 GRADGVILIGQHDQDPLPERLAETGLPFVVW-GRPLPGQ---PYCYVGSDN 109 (275)
T ss_pred CCCCEEEEeCCCCChHHHHHHHhCCCCEEEE-CCccCCC---CCCEEEECc
Confidence 4789999988766667799999999999966 7765432 345544444
No 146
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=57.05 E-value=32 Score=31.27 Aligned_cols=51 Identities=10% Similarity=0.004 Sum_probs=37.3
Q ss_pred CCCCeEEEeCCCcc----hhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCCC
Q 006541 126 KLPDCVVVLDTERK----SSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGND 177 (641)
Q Consensus 126 ~~Pdlvii~d~~~~----~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~Nd 177 (641)
...|++|+++...+ ..+++.|++.|+|+|++++...+|- -+..|+.+....
T Consensus 46 ~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~l-a~~ad~~l~~~~ 100 (120)
T cd05710 46 TEKSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSPL-AKLADYVIVYGF 100 (120)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCCcH-HHhCCEEEEccC
Confidence 45689888886654 4788889999999999999866552 234566666654
No 147
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=56.91 E-value=42 Score=35.35 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=45.3
Q ss_pred CCCCeEEEeCCCcch----hHHHHHhhcCCCEEEEeCC-CCCCCCCCceEEeecC--CC--hh------h-HHHHHHHHH
Q 006541 126 KLPDCVVVLDTERKS----SVIMEAAKLQVPIVALVDS-SMPLDVYSKITYPVPG--ND--SV------Q-FVYLLCNMI 189 (641)
Q Consensus 126 ~~Pdlvii~d~~~~~----~ai~EA~~l~IP~IalvDT-n~~~~~~~~IdypIP~--Nd--S~------~-si~~i~~ll 189 (641)
..=|++|+++-.... .+++.|+..|+|||+|+|+ +++.. ..-|+.++. ++ .. + ..-+++.+|
T Consensus 176 ~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla--~~Ad~~L~~~~~~~~~~~~~~~s~~a~l~l~d~L 253 (281)
T COG1737 176 TPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLA--KLADIVLLVPVAEESFFRSPISSRIAQLALIDAL 253 (281)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchh--hhhceEEeccCccccchhhhHHHHHHHHHHHHHH
Confidence 466788888865553 6778889999999999999 55544 455555544 32 11 1 344455666
Q ss_pred HHHHHHHhh
Q 006541 190 TKTFLVEQK 198 (641)
Q Consensus 190 ~~ail~g~~ 198 (641)
..++....+
T Consensus 254 ~~~~~~~~~ 262 (281)
T COG1737 254 ITAVAQRRG 262 (281)
T ss_pred HHHHHHHhH
Confidence 665554433
No 148
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=56.55 E-value=19 Score=36.49 Aligned_cols=103 Identities=23% Similarity=0.221 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCeEEEEeCChhHHHHHHHHHHHhCCCcccCCcccccCccccCCcchhhhhhhccccccCCCCCCCeE
Q 006541 52 NACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKLPDCV 131 (641)
Q Consensus 52 ~A~~~i~~i~~~~g~ILfV~T~~~~~~~v~~~a~~~g~~~~~vn~rW~igG~LTN~~~~kk~~~~~kk~~~g~~~~Pdlv 131 (641)
-|..++..+.+.|-++.+|+-.+. .+++.+|++.|-.+.+.|.-=...|.+|=|.. -
T Consensus 81 ga~elv~~lk~~G~~v~iiSgg~~--~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~---------------------g 137 (212)
T COG0560 81 GAEELVAALKAAGAKVVIISGGFT--FLVEPIAERLGIDYVVANELEIDDGKLTGRVV---------------------G 137 (212)
T ss_pred cHHHHHHHHHHCCCEEEEEcCChH--HHHHHHHHHhCCchheeeEEEEeCCEEeceee---------------------e
Confidence 378888888888999999987766 57889999999776533322211133444331 1
Q ss_pred EEeCCCcchhHH-HHHhhcCCC---EEEEeCCCCCCCCCCceEEeecCCC
Q 006541 132 VVLDTERKSSVI-MEAAKLQVP---IVALVDSSMPLDVYSKITYPVPGND 177 (641)
Q Consensus 132 ii~d~~~~~~ai-~EA~~l~IP---~IalvDTn~~~~~~~~IdypIP~Nd 177 (641)
.+++......++ .=+.++|++ ++|.-||.+|..+.+.+..||.-|-
T Consensus 138 ~~~~~~~K~~~l~~~~~~~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n~ 187 (212)
T COG0560 138 PICDGEGKAKALRELAAELGIPLEETVAYGDSANDLPMLEAAGLPIAVNP 187 (212)
T ss_pred eecCcchHHHHHHHHHHHcCCCHHHeEEEcCchhhHHHHHhCCCCeEeCc
Confidence 123333334455 556778999 9999999999988888999999995
No 149
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=55.10 E-value=21 Score=32.17 Aligned_cols=38 Identities=11% Similarity=0.060 Sum_probs=30.3
Q ss_pred CCCCeEEEeCCCcc----hhHHHHHhhcCCCEEEEeCCCCCC
Q 006541 126 KLPDCVVVLDTERK----SSVIMEAAKLQVPIVALVDSSMPL 163 (641)
Q Consensus 126 ~~Pdlvii~d~~~~----~~ai~EA~~l~IP~IalvDTn~~~ 163 (641)
...|++|++....+ ..++++|+..|+|+|+|++...+|
T Consensus 45 ~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~ 86 (126)
T cd05008 45 DEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGST 86 (126)
T ss_pred CCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCCh
Confidence 57788888875544 378899999999999999976544
No 150
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=52.95 E-value=48 Score=38.85 Aligned_cols=48 Identities=6% Similarity=-0.025 Sum_probs=39.7
Q ss_pred CeEEEeCCCcc----hhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCCC
Q 006541 129 DCVVVLDTERK----SSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGND 177 (641)
Q Consensus 129 dlvii~d~~~~----~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~Nd 177 (641)
+++|.+++.-+ ..|+++|++.|.+++|||+....+- .+..|++++-+.
T Consensus 332 ~L~I~ISQSGETaDTl~ALr~ak~~G~~tlaItNv~gSti-~Resd~~l~~~A 383 (597)
T COG0449 332 TLVIAISQSGETADTLAALRLAKEQGAKTLAITNVPGSTI-ARESDHTLLIRA 383 (597)
T ss_pred cEEEEEccCcccHHHHHHHHHHHHcCCCEEEEEecCCChh-hcccceEEEecc
Confidence 77777777665 4899999999999999999877763 478899998885
No 151
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=51.16 E-value=2e+02 Score=28.54 Aligned_cols=131 Identities=11% Similarity=0.122 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEeCChhHHHHHHHHHHHhCCCcccCCcccccCcc-cc-CCcchhhhh-hh-ccc
Q 006541 44 DKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGF-LT-NSSSPKKFR-SR-NKK 119 (641)
Q Consensus 44 ~~T~~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v~~~a~~~g~~~~~vn~rW~igG~-LT-N~~~~kk~~-~~-~kk 119 (641)
+.-...+.+|...|..-..+|++||..|+.-.+.++-.-.|+.+|-|.. ..+= +|+. || |.....-.- ++ +..
T Consensus 21 ~~l~~~I~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~--eR~~-lpaIaLt~dsS~lTai~NDy~yd~ 97 (176)
T COG0279 21 EALIEAIERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEK--ERPS-LPAIALSTDSSVLTAIANDYGYDE 97 (176)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHh--cCCC-CCeeEeecccHHHhhhhccccHHH
Confidence 5556778889999999889999999999988877776666777777643 3223 2432 33 544322110 00 000
Q ss_pred c---cc-CCCCCCCeEEEeCCCcch----hHHHHHhhcCCCEEEEeCCCCCC-CCCCceEEeecCCC
Q 006541 120 I---RF-GPTKLPDCVVVLDTERKS----SVIMEAAKLQVPIVALVDSSMPL-DVYSKITYPVPGND 177 (641)
Q Consensus 120 ~---~~-g~~~~Pdlvii~d~~~~~----~ai~EA~~l~IP~IalvDTn~~~-~~~~~IdypIP~Nd 177 (641)
+ .+ ..-+.=|+++-+.+.-|. .|++.|..+++-||++.-.|..- .-+.-+.+.||..+
T Consensus 98 vFsRqveA~g~~GDvLigISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~~~~D~~i~VPs~~ 164 (176)
T COG0279 98 VFSRQVEALGQPGDVLIGISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLAGLLDVEIRVPSTD 164 (176)
T ss_pred HHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCcccccccceEEecCCCc
Confidence 0 01 124577999999888774 78999999999999998776542 00113556678776
No 152
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=50.94 E-value=1.9e+02 Score=33.84 Aligned_cols=96 Identities=5% Similarity=0.014 Sum_probs=56.8
Q ss_pred hcCCeEEEEeCChhH--HHHHHHHHHHhCCCcccCCcccccCccccCCcchhhhhhhccccccCCCCCCCeEEEeCCCcc
Q 006541 62 RQRAAFMFVNTNPLF--DEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKLPDCVVVLDTERK 139 (641)
Q Consensus 62 ~~~g~ILfV~T~~~~--~~~v~~~a~~~g~~~~~vn~rW~igG~LTN~~~~kk~~~~~kk~~~g~~~~Pdlvii~d~~~~ 139 (641)
.+-++|.|+|+.... ....+.+..+.+...+ .+..+..+.... . .....|++|+++..-+
T Consensus 287 ~~a~~I~~~G~GsS~~aa~~a~~~~~~~~~~~~----~~~~~~~~~~~~--~------------~~~~~dlvI~iS~SG~ 348 (604)
T PRK00331 287 KKIDRIYIVACGTSYHAGLVAKYLIESLAGIPV----EVEIASEFRYRD--P------------VLSPKTLVIAISQSGE 348 (604)
T ss_pred hcCCEEEEEEeecHHHHHHHHHHHHHHHcCCCE----EEEehhhhhccC--C------------CCCCCeEEEEEcCCCC
Confidence 456789999987652 3344445555433222 120112111100 0 1246788888886655
Q ss_pred h----hHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCC
Q 006541 140 S----SVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGN 176 (641)
Q Consensus 140 ~----~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~N 176 (641)
. .+++.|+..|+|||+|++...+|- -...|+.|+.+
T Consensus 349 T~e~i~a~~~ak~~ga~~IaIT~~~~S~L-a~~aD~~l~~~ 388 (604)
T PRK00331 349 TADTLAALRLAKELGAKTLAICNVPGSTI-ARESDAVLYTH 388 (604)
T ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCChh-HHhcCcEEEec
Confidence 3 788889999999999999755441 24567777765
No 153
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=49.50 E-value=29 Score=31.45 Aligned_cols=49 Identities=16% Similarity=0.110 Sum_probs=35.1
Q ss_pred CCCCeEEEeCCCcc----hhHHHHHhhcCCCEEEEeCCCCCCCCCCce------EEeecCCC
Q 006541 126 KLPDCVVVLDTERK----SSVIMEAAKLQVPIVALVDSSMPLDVYSKI------TYPVPGND 177 (641)
Q Consensus 126 ~~Pdlvii~d~~~~----~~ai~EA~~l~IP~IalvDTn~~~~~~~~I------dypIP~Nd 177 (641)
...|++|+++...+ ..+++.|+..|+|+|++++ +.+.. ... .+++|.+.
T Consensus 42 ~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~-~~~l~--~~~~~~~~~~~~~p~~~ 100 (119)
T cd05017 42 DRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAITS-GGKLL--EMAREHGVPVIIIPKGL 100 (119)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEeC-CchHH--HHHHHcCCcEEECCCCC
Confidence 46789888886654 3678889999999999995 33332 123 37778876
No 154
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=46.38 E-value=1.3e+02 Score=32.06 Aligned_cols=63 Identities=21% Similarity=0.212 Sum_probs=35.8
Q ss_pred CCCCeEEEeCCC-cchhHHHHHhhcCCCEEEEeCCCCCCCCC--CceEEeecCCChhhHHHHHHHHH
Q 006541 126 KLPDCVVVLDTE-RKSSVIMEAAKLQVPIVALVDSSMPLDVY--SKITYPVPGNDSVQFVYLLCNMI 189 (641)
Q Consensus 126 ~~Pdlvii~d~~-~~~~ai~EA~~l~IP~IalvDTn~~~~~~--~~IdypIP~NdS~~si~~i~~ll 189 (641)
..-|+++..+-. .-..++.||..+|+|+|+ .|....++.. ....+.+|.+|.-.....+..++
T Consensus 271 ~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~-s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~ 336 (374)
T TIGR03088 271 QALDLFVLPSLAEGISNTILEAMASGLPVIA-TAVGGNPELVQHGVTGALVPPGDAVALARALQPYV 336 (374)
T ss_pred HhcCEEEeccccccCchHHHHHHHcCCCEEE-cCCCCcHHHhcCCCceEEeCCCCHHHHHHHHHHHH
Confidence 345666654422 225789999999999998 5554444311 11245677666433344433333
No 155
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=45.62 E-value=32 Score=38.55 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=29.0
Q ss_pred CCCCeEEEeCCCcchhHHHHHhhcCCCEEEEeCCC
Q 006541 126 KLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSS 160 (641)
Q Consensus 126 ~~Pdlvii~d~~~~~~ai~EA~~l~IP~IalvDTn 160 (641)
-.||++|++-..-=...|.||.+.|||++ ++|.-
T Consensus 122 ~~P~l~Ii~EtElWPnli~e~~~~~~p~~-LvNaR 155 (419)
T COG1519 122 WRPKLLIIMETELWPNLINELKRRGIPLV-LVNAR 155 (419)
T ss_pred cCCCEEEEEeccccHHHHHHHHHcCCCEE-EEeee
Confidence 48999999998888899999999999994 55553
No 156
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=44.43 E-value=18 Score=35.11 Aligned_cols=47 Identities=21% Similarity=0.322 Sum_probs=39.2
Q ss_pred CCCCCCcceEEEecceEEccCcEEEEEEEEEcCCCCeEecCCCCeeec
Q 006541 585 IPSIINLDSLKVEGDVWFGAGITLKGKVSIVAKRGMKLEIPDGIVLEN 632 (641)
Q Consensus 585 ~p~i~~~~~L~V~Gdv~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l~n 632 (641)
.|+-.=|-.-.++|||+|+++-++--.+++.|..| +|.|-.|.++|.
T Consensus 12 ap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aG-PI~iGEnniiEE 58 (190)
T KOG4042|consen 12 APSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAG-PIYIGENNIIEE 58 (190)
T ss_pred cCceEEEEecccccceEecCCcEecceEEEEcccC-CEEEccCchhhh
Confidence 46666677778999999999999999999999988 688877777765
No 157
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=43.41 E-value=20 Score=35.51 Aligned_cols=98 Identities=18% Similarity=0.328 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHhc--CCeEEEEeCChhHHHHHHHH-HHHhCCCcccCCcccccCccccCCcchhhhhhhccccccC
Q 006541 47 LICLRNACHFISLLARQ--RAAFMFVNTNPLFDEIVLQM-TQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFG 123 (641)
Q Consensus 47 ~~~L~~A~~~i~~i~~~--~g~ILfV~T~~~~~~~v~~~-a~~~g~~~~~vn~rW~igG~LTN~~~~kk~~~~~kk~~~g 123 (641)
+-.+..|..++..+..+ +.+||+..+.+...+..++. ...+...|.=....| .+++|.+.
T Consensus 31 vGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D~~~----------~~~rfl~~------- 93 (186)
T PF04413_consen 31 VGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLDFPW----------AVRRFLDH------- 93 (186)
T ss_dssp HHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---SSHH----------HHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCccCHH----------HHHHHHHH-------
Confidence 34456677778887654 56777777666666654433 222221111011111 23333222
Q ss_pred CCCCCCeEEEeCCCcchhHHHHHhhcCCCEEEEeCCCCCCC
Q 006541 124 PTKLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMPLD 164 (641)
Q Consensus 124 ~~~~Pdlvii~d~~~~~~ai~EA~~l~IP~IalvDTn~~~~ 164 (641)
-.||++|++...-=...|.+|++.|||+ .++|.-.++.
T Consensus 94 --~~P~~~i~~EtElWPnll~~a~~~~ip~-~LvNarls~~ 131 (186)
T PF04413_consen 94 --WRPDLLIWVETELWPNLLREAKRRGIPV-VLVNARLSER 131 (186)
T ss_dssp --H--SEEEEES----HHHHHH-----S-E-EEEEE-----
T ss_pred --hCCCEEEEEccccCHHHHHHHhhcCCCE-EEEeeeeccc
Confidence 2799999999888889999999999999 5677766553
No 158
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.25 E-value=67 Score=31.95 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=32.0
Q ss_pred CCCCeEEEeCCCcchhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeec
Q 006541 126 KLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVP 174 (641)
Q Consensus 126 ~~Pdlvii~d~~~~~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP 174 (641)
+.+|.+|+.....+..+++++...|||+|.+ |++.+.. .++|..+
T Consensus 53 ~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~---~~~~v~~ 97 (266)
T cd06278 53 YRVDGVIVTSGTLSSELAEECRRNGIPVVLI-NRYVDGP---GVDAVCS 97 (266)
T ss_pred cCCCEEEEecCCCCHHHHHHHhhcCCCEEEE-CCccCCC---CCCEEEE
Confidence 4689888887665667789999999999887 6554332 4555433
No 159
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.82 E-value=61 Score=32.39 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=28.0
Q ss_pred CCCCeEEEeCCCcchhHHHHHhhcCCCEEEEeCCCC
Q 006541 126 KLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSM 161 (641)
Q Consensus 126 ~~Pdlvii~d~~~~~~ai~EA~~l~IP~IalvDTn~ 161 (641)
..+|.+|+..+..+...+.++...|||+|.+ |++.
T Consensus 59 ~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~ 93 (270)
T cd06294 59 KRVDGFILLYSREDDPIIDYLKEEKFPFVVI-GKPE 93 (270)
T ss_pred cCcCEEEEecCcCCcHHHHHHHhcCCCEEEE-CCCC
Confidence 3589999987766667789999999999977 5544
No 160
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=39.83 E-value=91 Score=25.51 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhhCCC--CcEEEecCccchHHHHHHHHHcCCCCceEEEEecCCccccccCCCCCCCccccCCCChhhHHH
Q 006541 297 MVDQVESLNSKYGCN--VPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQQPHEKSFEGHSRKDKLYPSSDHSVVFL 374 (641)
Q Consensus 297 ~~~qi~~l~~~~g~~--iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~~f~Q~~~P~~~~~~~~~~~~~~~P~GhG~di~~ 374 (641)
+|+++..+-++.+.+ .+++--+....+++.++++.+. ..+..+|.+. .++ .+=|+- +-..
T Consensus 11 ~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~---------~g~~~vP~v~-i~g-------~~igg~-~~~~ 72 (84)
T TIGR02180 11 YCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEI---------TGQRTVPNIF-ING-------KFIGGC-SDLL 72 (84)
T ss_pred hHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHH---------hCCCCCCeEE-ECC-------EEEcCH-HHHH
Confidence 355666655566655 5577777776777788887764 2334567665 222 124666 8889
Q ss_pred HHHhcChhHHHH
Q 006541 375 SLMKSGTLDLLL 386 (641)
Q Consensus 375 aL~~sG~Ld~l~ 386 (641)
+|+++|-|+.++
T Consensus 73 ~~~~~g~l~~~~ 84 (84)
T TIGR02180 73 ALYKSGKLAELL 84 (84)
T ss_pred HHHHcCChhhhC
Confidence 999999998764
No 161
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=39.58 E-value=99 Score=32.05 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=26.7
Q ss_pred CCCCeEEEeCCCcc--hhHHHHHhhcCCCEEEEeCCCC
Q 006541 126 KLPDCVVVLDTERK--SSVIMEAAKLQVPIVALVDSSM 161 (641)
Q Consensus 126 ~~Pdlvii~d~~~~--~~ai~EA~~l~IP~IalvDTn~ 161 (641)
+.||.+|+.....+ ..+++++...+||+|.+ |+..
T Consensus 55 ~~~DgiIi~~~~~~~~~~~~~~~~~~~iPvV~v-~~~~ 91 (298)
T cd06302 55 QGVDAIAVVPNDPDALEPVLKKAREAGIKVVTH-DSDV 91 (298)
T ss_pred cCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEE-cCCC
Confidence 46999999866544 56788999999998765 5543
No 162
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=39.16 E-value=91 Score=34.04 Aligned_cols=109 Identities=14% Similarity=0.111 Sum_probs=60.0
Q ss_pred eeHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCChhHHHHHHHHHHHhCCCcccCCcccccCccccCCcchhhhhhhcccc
Q 006541 41 IDSDKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKI 120 (641)
Q Consensus 41 Idl~~T~~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v~~~a~~~g~~~~~vn~rW~igG~LTN~~~~kk~~~~~kk~ 120 (641)
||+..+. +..--..+|..+-++|-.++ |-++... .+..++...|-.|..+ ++. |+++..+. .....|..++
T Consensus 5 iDi~~p~-hvhfFk~~I~eL~~~GheV~-it~R~~~--~~~~LL~~yg~~y~~i-G~~--g~~~~~Kl--~~~~~R~~~l 75 (335)
T PF04007_consen 5 IDITHPA-HVHFFKNIIRELEKRGHEVL-ITARDKD--ETEELLDLYGIDYIVI-GKH--GDSLYGKL--LESIERQYKL 75 (335)
T ss_pred EECCCch-HHHHHHHHHHHHHhCCCEEE-EEEeccc--hHHHHHHHcCCCeEEE-cCC--CCCHHHHH--HHHHHHHHHH
Confidence 3444333 33344566777755555564 4455442 4456788888777633 344 23222211 0011111111
Q ss_pred -ccCCCCCCCeEEEeCCCcchhHHHHHhhcCCCEEEEeCCCC
Q 006541 121 -RFGPTKLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSM 161 (641)
Q Consensus 121 -~~g~~~~Pdlvii~d~~~~~~ai~EA~~l~IP~IalvDTn~ 161 (641)
.+-....||++|-.. ...|.+=|.-+|||+|.+.||.-
T Consensus 76 ~~~~~~~~pDv~is~~---s~~a~~va~~lgiP~I~f~D~e~ 114 (335)
T PF04007_consen 76 LKLIKKFKPDVAISFG---SPEAARVAFGLGIPSIVFNDTEH 114 (335)
T ss_pred HHHHHhhCCCEEEecC---cHHHHHHHHHhCCCeEEEecCch
Confidence 000124899998544 35778888999999999999854
No 163
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.82 E-value=1.2e+02 Score=30.48 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=26.0
Q ss_pred CCCCeEEEeCCCcc--hhHHHHHhhcCCCEEEEeCCCC
Q 006541 126 KLPDCVVVLDTERK--SSVIMEAAKLQVPIVALVDSSM 161 (641)
Q Consensus 126 ~~Pdlvii~d~~~~--~~ai~EA~~l~IP~IalvDTn~ 161 (641)
+.+|.+|+.....+ ..++++|...|||+|.+ |+..
T Consensus 59 ~~vDgiii~~~~~~~~~~~i~~~~~~gIpvV~~-d~~~ 95 (274)
T cd06311 59 RKIDALVILPFESAPLTQPVAKAKKAGIFVVVV-DRGL 95 (274)
T ss_pred cCCCEEEEeCCCchhhHHHHHHHHHCCCeEEEE-cCCC
Confidence 46899998865433 36789999999999885 5543
No 164
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=38.04 E-value=4.6e+02 Score=31.05 Aligned_cols=71 Identities=7% Similarity=0.123 Sum_probs=42.4
Q ss_pred CeEEEeCCCcc-----hhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCCC--hhhHHHHHHHHHHHHHHHHhhh
Q 006541 129 DCVVVLDTERK-----SSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGND--SVQFVYLLCNMITKTFLVEQKK 199 (641)
Q Consensus 129 dlvii~d~~~~-----~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~Nd--S~~si~~i~~ll~~ail~g~~~ 199 (641)
+.+|++.+... ..+++|++..|-++|+|.+............+++|.+. ++-.....+++|+..+...++.
T Consensus 548 ~~VI~i~~~~~~~~~~~~~~~~lk~rga~vi~It~~~~~l~~~ad~~i~ip~~~~l~p~~~~ip~Qllay~la~~~G~ 625 (640)
T PTZ00295 548 TPVILIILDDEHKELMINAAEQVKARGAYIIVITDDEDLVKDFADEIILIPSNGPLTALLAVIPLQLLAYEIAILRGI 625 (640)
T ss_pred CeEEEEEcCCccHHHHHHHHHHHHHcCCEEEEEecCCccccccCCeEEEeCCcccchHHHHHHHHHHHHHHHHHHcCC
Confidence 44555544322 47899999999999999876432110112456677764 3333333367777776666554
No 165
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=37.61 E-value=90 Score=31.05 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=27.2
Q ss_pred CCCCeEEEeCCCcchhHHHHHhhcCCCEEEEeCCCCC
Q 006541 126 KLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMP 162 (641)
Q Consensus 126 ~~Pdlvii~d~~~~~~ai~EA~~l~IP~IalvDTn~~ 162 (641)
+.+|.+|+.....+...+.++...+||+|.+ |+..+
T Consensus 58 ~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~ 93 (268)
T cd06271 58 GLVDGVIISRTRPDDPRVALLLERGFPFVTH-GRTEL 93 (268)
T ss_pred CCCCEEEEecCCCCChHHHHHHhcCCCEEEE-CCcCC
Confidence 4689999877655556788899999999976 66543
No 166
>PLN02335 anthranilate synthase
Probab=37.50 E-value=77 Score=32.33 Aligned_cols=32 Identities=16% Similarity=0.333 Sum_probs=23.0
Q ss_pred HhcCCeEEEEeCChhHHHHHHHHHHHhCCCcc
Q 006541 61 ARQRAAFMFVNTNPLFDEIVLQMTQKIGCYNP 92 (641)
Q Consensus 61 ~~~~g~ILfV~T~~~~~~~v~~~a~~~g~~~~ 92 (641)
+.++++||+|.....+...+.......|....
T Consensus 15 ~~~~~~ilviD~~dsft~~i~~~L~~~g~~~~ 46 (222)
T PLN02335 15 SKQNGPIIVIDNYDSFTYNLCQYMGELGCHFE 46 (222)
T ss_pred cCccCcEEEEECCCCHHHHHHHHHHHCCCcEE
Confidence 46889999999877666566666666786543
No 167
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=35.62 E-value=1.2e+02 Score=32.76 Aligned_cols=95 Identities=14% Similarity=0.146 Sum_probs=53.9
Q ss_pred HHHHHHhcCCeEEEEeC---ChhHHHH---HHHHHHHhCCCcccCCcccccCccccCCcchhhhhhhccccccCCCCCCC
Q 006541 56 FISLLARQRAAFMFVNT---NPLFDEI---VLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKLPD 129 (641)
Q Consensus 56 ~i~~i~~~~g~ILfV~T---~~~~~~~---v~~~a~~~g~~~~~vn~rW~igG~LTN~~~~kk~~~~~kk~~~g~~~~Pd 129 (641)
.+.-.+..+.+|-||.- ++++..+ +++.|++.|.... + . +. ++... .+..+....+ ..+-+|
T Consensus 15 ~~~~~~~~~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~G~~v~-----~-~-~~-~~~d~-~~q~~~i~~l---i~~~vd 82 (336)
T PRK15408 15 LISMTVQAAERIAFIPKLVGVGFFTSGGNGAKEAGKELGVDVT-----Y-D-GP-TEPSV-SGQVQLINNF---VNQGYN 82 (336)
T ss_pred HhcccccCCcEEEEEECCCCCHHHHHHHHHHHHHHHHhCCEEE-----E-E-CC-CCCCH-HHHHHHHHHH---HHcCCC
Confidence 33444446778877653 4555444 5677888775432 2 1 21 22111 1100000000 135799
Q ss_pred eEEEeCCCcc--hhHHHHHhhcCCCEEEEeCCCCCC
Q 006541 130 CVVVLDTERK--SSVIMEAAKLQVPIVALVDSSMPL 163 (641)
Q Consensus 130 lvii~d~~~~--~~ai~EA~~l~IP~IalvDTn~~~ 163 (641)
.|++.....+ ..++++|...|||+|. +|++.++
T Consensus 83 gIiv~~~d~~al~~~l~~a~~~gIpVV~-~d~~~~~ 117 (336)
T PRK15408 83 AIIVSAVSPDGLCPALKRAMQRGVKVLT-WDSDTKP 117 (336)
T ss_pred EEEEecCCHHHHHHHHHHHHHCCCeEEE-eCCCCCC
Confidence 9999765555 6899999999999987 5666544
No 168
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=34.40 E-value=1.1e+02 Score=30.49 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=28.1
Q ss_pred CCCCeEEEeCCCcchhHHHHHhhcCCCEEEEeCCCC
Q 006541 126 KLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSM 161 (641)
Q Consensus 126 ~~Pdlvii~d~~~~~~ai~EA~~l~IP~IalvDTn~ 161 (641)
...|.+|++.+.....+++++.+.|||+|.+ |+..
T Consensus 54 ~~vdgiii~~~~~~~~~~~~l~~~~iPvv~~-~~~~ 88 (268)
T cd06273 54 RGVDGLALIGLDHSPALLDLLARRGVPYVAT-WNYS 88 (268)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEE-cCCC
Confidence 3689999988776778889999999999987 4443
No 169
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=33.96 E-value=1.8e+02 Score=28.90 Aligned_cols=86 Identities=19% Similarity=0.169 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeCChhHHHHHHHHHHHhCCCcccCCcccccCccccCCcchhhhhhhccccccCCCCCCC
Q 006541 50 LRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKLPD 129 (641)
Q Consensus 50 L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v~~~a~~~g~~~~~vn~rW~igG~LTN~~~~kk~~~~~kk~~~g~~~~Pd 129 (641)
=.-|..||....+-.| +++|++..- +.|++.|.+.+ .|.| +-.+...++-...- ....||
T Consensus 64 ~e~~i~fi~~~~~pdG---IISTk~~~i----~~Akk~~~~aI---qR~F----ilDS~Al~~~~~~i------~~~~pD 123 (181)
T COG1954 64 DEVAIEFIKEVIKPDG---IISTKSNVI----KKAKKLGILAI---QRLF----ILDSIALEKGIKQI------EKSEPD 123 (181)
T ss_pred chHHHHHHHHhccCCe---eEEccHHHH----HHHHHcCCcee---eeee----eecHHHHHHHHHHH------HHcCCC
Confidence 3346666666654444 456665532 34666666554 3442 33333332211110 125899
Q ss_pred eEEEeCCCcchhHHHHHhhcCCCEEE
Q 006541 130 CVVVLDTERKSSVIMEAAKLQVPIVA 155 (641)
Q Consensus 130 lvii~d~~~~~~ai~EA~~l~IP~Ia 155 (641)
++=++----.+.+=.=..+.++|+||
T Consensus 124 ~iEvLPGv~Pkvi~~i~~~t~~piIA 149 (181)
T COG1954 124 FIEVLPGVMPKVIKEITEKTHIPIIA 149 (181)
T ss_pred EEEEcCcccHHHHHHHHHhcCCCEEe
Confidence 98887754333333335678899986
No 170
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=33.79 E-value=1.2e+02 Score=30.76 Aligned_cols=77 Identities=13% Similarity=0.141 Sum_probs=44.8
Q ss_pred eEEEEeCChhHHHHHHHHHHHhCCCcccCCcccccCccccCCcchhhhhhhccccccCCCCCCCeEEEe----CCC---c
Q 006541 66 AFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKLPDCVVVL----DTE---R 138 (641)
Q Consensus 66 ~ILfV~T~~~~~~~v~~~a~~~g~~~~~vn~rW~igG~LTN~~~~kk~~~~~kk~~~g~~~~Pdlvii~----d~~---~ 138 (641)
+||++.....+..-+.......|..... + +........... ....+|.||++ +|. .
T Consensus 2 ~ilv~d~~~~~~~~~~~~l~~~G~~~~~----~--~~~~~~~~~~~~-----------~~~~~dgliisGGp~~~~~~~~ 64 (214)
T PRK07765 2 RILVVDNYDSFVFNLVQYLGQLGVEAEV----W--RNDDPRLADEAA-----------VAAQFDGVLLSPGPGTPERAGA 64 (214)
T ss_pred eEEEEECCCcHHHHHHHHHHHcCCcEEE----E--ECCCcCHHHHHH-----------hhcCCCEEEECCCCCChhhcch
Confidence 5788888776655566666777765431 1 111111000100 01357777776 332 2
Q ss_pred chhHHHHHhhcCCCEEEEeCC
Q 006541 139 KSSVIMEAAKLQVPIVALVDS 159 (641)
Q Consensus 139 ~~~ai~EA~~l~IP~IalvDT 159 (641)
....+++|...++|++|||=-
T Consensus 65 ~~~~i~~~~~~~~PiLGIC~G 85 (214)
T PRK07765 65 SIDMVRACAAAGTPLLGVCLG 85 (214)
T ss_pred HHHHHHHHHhCCCCEEEEccC
Confidence 346889999899999999955
No 171
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=33.69 E-value=99 Score=30.42 Aligned_cols=71 Identities=13% Similarity=0.096 Sum_probs=38.6
Q ss_pred EEEEeCChhH-HHHHHHHHHHhCCCcccCCcccccCccccCCcchhhhhhhccccccCCCCCCCeEEEeCCCcc------
Q 006541 67 FMFVNTNPLF-DEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKLPDCVVVLDTERK------ 139 (641)
Q Consensus 67 ILfV~T~~~~-~~~v~~~a~~~g~~~~~vn~rW~igG~LTN~~~~kk~~~~~kk~~~g~~~~Pdlvii~d~~~~------ 139 (641)
||+|++...+ .+++..+. +.|.... --+| -...+ ..+. ...||.||+..-..+
T Consensus 2 il~id~~dsf~~nl~~~l~-~~~~~~~--v~~~-~~~~~---~~~~-------------~~~~~~iilsgGP~~~~~~~~ 61 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFC-ELGTEVM--VKRN-DELQL---TDIE-------------QLAPSHLVISPGPCTPNEAGI 61 (191)
T ss_pred EEEEECCCchHHHHHHHHH-HCCCcEE--EEeC-CCCCH---HHHH-------------hcCCCeEEEcCCCCChHhCCC
Confidence 7999997765 44555554 4565432 1233 11111 1111 136888887763221
Q ss_pred -hhHHHHHhhcCCCEEEEeC
Q 006541 140 -SSVIMEAAKLQVPIVALVD 158 (641)
Q Consensus 140 -~~ai~EA~~l~IP~IalvD 158 (641)
...+++ ...++|++|||=
T Consensus 62 ~~~~i~~-~~~~~PiLGIC~ 80 (191)
T PRK06774 62 SLAVIRH-FADKLPILGVCL 80 (191)
T ss_pred chHHHHH-hcCCCCEEEECH
Confidence 234443 456999999984
No 172
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=33.66 E-value=3.4e+02 Score=31.76 Aligned_cols=50 Identities=6% Similarity=0.034 Sum_probs=35.8
Q ss_pred CCCCeEEEeCCCcch----hHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCC
Q 006541 126 KLPDCVVVLDTERKS----SVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGN 176 (641)
Q Consensus 126 ~~Pdlvii~d~~~~~----~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~N 176 (641)
...|++|+++..-+. .+++.|+..|+|+|+|++....|- -+..|+.|+.+
T Consensus 337 ~~~dlvI~iS~SG~T~e~v~a~~~ak~~ga~~IaIT~~~~S~L-a~~ad~~l~~~ 390 (607)
T TIGR01135 337 DKDTLVIAISQSGETADTLAALRLAKELGAKTLGICNVPGSTL-VRESDHTLYTR 390 (607)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCChH-HhhcCceEEec
Confidence 467898888766553 688888999999999999654441 13566666654
No 173
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=33.43 E-value=61 Score=31.16 Aligned_cols=40 Identities=13% Similarity=0.300 Sum_probs=26.0
Q ss_pred EEEecceEEccCcEEEEEE--EEEcCCCCeEecCCCCeeeccee
Q 006541 594 LKVEGDVWFGAGITLKGKV--SIVAKRGMKLEIPDGIVLENKEI 635 (641)
Q Consensus 594 L~V~Gdv~fg~~v~l~G~v--~i~a~~~~~~~ip~g~~l~n~~~ 635 (641)
++++|++.|-..+.++|++ .|.++.+ ++|.....+++.+.
T Consensus 30 ~~f~G~l~f~~~l~IdG~~~G~v~s~~~--iiv~~~g~V~gei~ 71 (146)
T COG1664 30 TTFKGELVFEGPLRIDGTFEGDVHSDGG--IVVGESGRVEGEIE 71 (146)
T ss_pred CEEEEEEEecceEEEeEEEEEEEEeCCC--EEECCccEEEEEEE
Confidence 4577888887778888766 3444444 66766666666543
No 174
>COG4069 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.77 E-value=41 Score=36.02 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=29.7
Q ss_pred CCCCCeEEEeCCCcchhHHHHHhhcCCCEEEEeCCCCCC
Q 006541 125 TKLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMPL 163 (641)
Q Consensus 125 ~~~Pdlvii~d~~~~~~ai~EA~~l~IP~IalvDTn~~~ 163 (641)
..-.+++|.+.-..-..|-.=-.++|||+|||+|-|||-
T Consensus 264 ~~~~~lvvTvGDDTT~vagdIl~RfgipiiGItDgD~D~ 302 (367)
T COG4069 264 IEGAGLVVTVGDDTTEVAGDILYRFGIPIIGITDGDCDE 302 (367)
T ss_pred hccCceEEEEcCcchhHHHHHHHhcCCcEEecccCChHH
Confidence 344557777766666666667789999999999999984
No 175
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.40 E-value=1e+02 Score=30.78 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=27.9
Q ss_pred CCCCeEEEeCCCcchhHHHHHhhcCCCEEEEeCCCC
Q 006541 126 KLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSM 161 (641)
Q Consensus 126 ~~Pdlvii~d~~~~~~ai~EA~~l~IP~IalvDTn~ 161 (641)
+.+|.+|+..+..+...++++...+||+|.+ |+..
T Consensus 54 ~~~dgiii~~~~~~~~~~~~~~~~~ipvV~i-~~~~ 88 (270)
T cd06296 54 RRTDGVILVTPELTSAQRAALRRTGIPFVVV-DPAG 88 (270)
T ss_pred cCCCEEEEecCCCChHHHHHHhcCCCCEEEE-eccc
Confidence 4689998887766667799999999999986 5544
No 176
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=31.30 E-value=1.6e+02 Score=29.32 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=36.0
Q ss_pred CCCCeEEEeCCCcchhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCCChhhHHHHHHHHH
Q 006541 126 KLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGNDSVQFVYLLCNMI 189 (641)
Q Consensus 126 ~~Pdlvii~d~~~~~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~NdS~~si~~i~~ll 189 (641)
+.+|.+++.....+...++++...|+|+|.+ |+..+.. ...|... |..+..+.....|
T Consensus 54 ~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~---~~~~V~~--d~~~~g~~~~~~l 111 (264)
T cd06274 54 RQVDALIVAGSLPPDDPYYLCQKAGLPVVAL-DRPGDPS---RFPSVVS--DNRDGAAELTREL 111 (264)
T ss_pred cCCCEEEEcCCCCchHHHHHHHhcCCCEEEe-cCccCCC---CCCEEEE--ccHHHHHHHHHHH
Confidence 4679989887765555588999999999877 6655421 3455333 3444444433333
No 177
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=30.93 E-value=4.4e+02 Score=28.93 Aligned_cols=109 Identities=17% Similarity=0.102 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHhcCC--eEEEEeCChh--HHHHHHHHHH-HhCCCcccCCcccccCcc--ccCCcchhhhhhhcc
Q 006541 46 TLICLRNACHFISLLARQRA--AFMFVNTNPL--FDEIVLQMTQ-KIGCYNPNMNALWRMGGF--LTNSSSPKKFRSRNK 118 (641)
Q Consensus 46 T~~~L~~A~~~i~~i~~~~g--~ILfV~T~~~--~~~~v~~~a~-~~g~~~~~vn~rW~igG~--LTN~~~~kk~~~~~k 118 (641)
++...+....-|....++.+ +|+|+++... ....++-+.+ .++.. + -| ++.+ ++|.. +
T Consensus 19 ~~~~~~~~~~~l~~~l~~~~~~~I~~~g~GsS~~~~~~~~~~~~~~~~~~-~----~~-~~~se~~~~~~--~------- 83 (340)
T COG2222 19 LLEANRAVLAELADFLRKRGIDRILFVGCGSSLHAATPAKYLLERELGLL-V----AA-IPASEFLTNGA--K------- 83 (340)
T ss_pred HHHhhhhHHHHHHHHHHhCCCcEEEEEecCchHHHHHHHHHHHHHhhCce-e----ee-echhHHhccCc--c-------
Confidence 33444444444444444554 9999988654 4445555555 33332 1 13 2321 12211 1
Q ss_pred ccccCCCCCCC-eEEEeCCCcc----hhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCC
Q 006541 119 KIRFGPTKLPD-CVVVLDTERK----SSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGN 176 (641)
Q Consensus 119 k~~~g~~~~Pd-lvii~d~~~~----~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~N 176 (641)
....+ ++|++...-+ .-+++.|+..|..+|||++.-..|- -+..||+||-=
T Consensus 84 ------~~~~~~lvi~~S~SG~TpE~vaa~~~a~~~ga~~i~lT~~~dSpL-a~~ad~~i~~~ 139 (340)
T COG2222 84 ------YLGEDSLVIAFSQSGNTPESVAAAELAKEGGALTIALTNEEDSPL-ARAADYVIPYL 139 (340)
T ss_pred ------ccCCCeEEEEEeCCCCCHHHHHHHHHhccCCCeEEEEecCCCChh-hhcCCeeeecc
Confidence 12334 6777776655 3677888889999999998766552 35666666543
No 178
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.65 E-value=1.3e+02 Score=30.69 Aligned_cols=36 Identities=22% Similarity=0.479 Sum_probs=27.8
Q ss_pred CCCCeEEEeCCCcchhHHHHHhhcCCCEEEEeCCCCC
Q 006541 126 KLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMP 162 (641)
Q Consensus 126 ~~Pdlvii~d~~~~~~ai~EA~~l~IP~IalvDTn~~ 162 (641)
..+|.+|+.....+...++++...|||+|.+ |+..+
T Consensus 55 ~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~ 90 (283)
T cd06279 55 ALVDGFIVYGVPRDDPLVAALLRRGLPVVVV-DQPLP 90 (283)
T ss_pred cCCCEEEEeCCCCChHHHHHHHHcCCCEEEE-ecCCC
Confidence 4789988887655556899999999999866 66544
No 179
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=30.63 E-value=1.3e+02 Score=29.69 Aligned_cols=72 Identities=15% Similarity=0.173 Sum_probs=40.0
Q ss_pred EEEEeCChhHHHHHHHHHHHhCCCcccCCcccccCccccCCc-chhhhhhhccccccCCCCCCCeEEEeCCC-------c
Q 006541 67 FMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSS-SPKKFRSRNKKIRFGPTKLPDCVVVLDTE-------R 138 (641)
Q Consensus 67 ILfV~T~~~~~~~v~~~a~~~g~~~~~vn~rW~igG~LTN~~-~~kk~~~~~kk~~~g~~~~Pdlvii~d~~-------~ 138 (641)
||+|.+...+..-+..+.+..|.... .+.|.. +.... ....||.||++.-. .
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~----------v~~~~~~~~~~~----------~~~~~d~iilsgGpg~p~~~~~ 61 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVV----------VKRNDSLTLQEI----------EALLPLLIVISPGPCTPNEAGI 61 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceE----------EEECCCCCHHHH----------HhcCCCEEEEcCCCCChhhcch
Confidence 78999877765544444444565422 112211 11111 01358887776522 1
Q ss_pred chhHHHHHhhcCCCEEEEeCC
Q 006541 139 KSSVIMEAAKLQVPIVALVDS 159 (641)
Q Consensus 139 ~~~ai~EA~~l~IP~IalvDT 159 (641)
+...++++ ..++|+.|+|=-
T Consensus 62 ~~~~i~~~-~~~~PvLGIC~G 81 (188)
T TIGR00566 62 SLEAIRHF-AGKLPILGVCLG 81 (188)
T ss_pred hHHHHHHh-ccCCCEEEECHH
Confidence 24566776 679999999843
No 180
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.24 E-value=1.1e+02 Score=30.65 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=25.9
Q ss_pred CCCCeEEEeCCCcc-----hhHHHHHhhcCCCEEEEeCCCCC
Q 006541 126 KLPDCVVVLDTERK-----SSVIMEAAKLQVPIVALVDSSMP 162 (641)
Q Consensus 126 ~~Pdlvii~d~~~~-----~~ai~EA~~l~IP~IalvDTn~~ 162 (641)
+.+|.+|++.+..+ ..++.++.+.|||+|.+ |++.+
T Consensus 54 ~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i-~~~~~ 94 (273)
T cd06292 54 RGVRGVVFISSLHADTHADHSHYERLAERGLPVVLV-NGRAP 94 (273)
T ss_pred cCCCEEEEeCCCCCcccchhHHHHHHHhCCCCEEEE-cCCCC
Confidence 47899998764432 24588999999999876 66543
No 181
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.19 E-value=1.5e+02 Score=29.80 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=26.2
Q ss_pred CCCCeEEEeCCCcc--hhHHHHHhhcCCCEEEEeCCCC
Q 006541 126 KLPDCVVVLDTERK--SSVIMEAAKLQVPIVALVDSSM 161 (641)
Q Consensus 126 ~~Pdlvii~d~~~~--~~ai~EA~~l~IP~IalvDTn~ 161 (641)
..+|.+|+.....+ ...++++...|||+|.+ |+..
T Consensus 54 ~~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~-~~~~ 90 (282)
T cd06318 54 RGVNVLIINPVDPEGLVPAVAAAKAAGVPVVVV-DSSI 90 (282)
T ss_pred cCCCEEEEecCCccchHHHHHHHHHCCCCEEEe-cCCC
Confidence 57999998765544 35678999999999887 5543
No 182
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=29.92 E-value=1.7e+02 Score=29.04 Aligned_cols=89 Identities=10% Similarity=0.035 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEeCChhHHHHHHHHHHHhCCCcccCCcccccCccccCCcchhhhhhhccccccCCCCCC
Q 006541 49 CLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKLP 128 (641)
Q Consensus 49 ~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v~~~a~~~g~~~~~vn~rW~igG~LTN~~~~kk~~~~~kk~~~g~~~~P 128 (641)
.+.-|++++..-+--.|+|-+-|.+.-- .|..+|...-.... ...+| ....+|+..+ ..-
T Consensus 23 ~iedaARlLAQA~vgeG~IYi~G~~Em~--~v~~~Al~g~E~l~-~~k~l--~~~~~~~~~l---------------t~~ 82 (172)
T PF10740_consen 23 SIEDAARLLAQAIVGEGTIYIYGFGEME--AVEAEALYGAEPLP-SAKRL--SEDLENFDEL---------------TET 82 (172)
T ss_dssp HHHHHHHHHHHHHHTT--EEEEE-GGGG--GGHHHHHCSTT--T-TEEE----TT-----------------------TT
T ss_pred hHHHHHHHHHHHHhcCCEEEEEecChHH--HHHHHHHcCCCCCc-hhhcC--cccccccccc---------------ccc
Confidence 5667888888877788899888776532 23333433333332 34667 4555566543 356
Q ss_pred CeEEEeCCCcch-hHHHH---HhhcCCCEEEEe
Q 006541 129 DCVVVLDTERKS-SVIME---AAKLQVPIVALV 157 (641)
Q Consensus 129 dlvii~d~~~~~-~ai~E---A~~l~IP~Ialv 157 (641)
|-|+++.|..+. .|++= ....|||+|+++
T Consensus 83 DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 83 DRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp -EEEEEES-S--HHHHHHHHHHHHHT--EEEEE
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEE
Confidence 777777777665 44444 445599999999
No 183
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=29.53 E-value=1.2e+02 Score=30.15 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=28.3
Q ss_pred CCCCeEEEeCCCcchhHHHHHhhcCCCEEEEeCCCCC
Q 006541 126 KLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMP 162 (641)
Q Consensus 126 ~~Pdlvii~d~~~~~~ai~EA~~l~IP~IalvDTn~~ 162 (641)
+..|.+|+..+..+..+++++...+||+|.+ |++.+
T Consensus 54 ~~~dgiii~~~~~~~~~l~~~~~~~ipvV~~-~~~~~ 89 (267)
T cd06283 54 YQVDGLIVNPTGNNKELYQRLAKNGKPVVLV-DRKIP 89 (267)
T ss_pred cCcCEEEEeCCCCChHHHHHHhcCCCCEEEE-cCCCC
Confidence 4679999887766666789999999999986 55443
No 184
>CHL00101 trpG anthranilate synthase component 2
Probab=29.46 E-value=1.6e+02 Score=29.09 Aligned_cols=74 Identities=9% Similarity=0.052 Sum_probs=44.0
Q ss_pred EEEEeCChhHHHHHHHHHHHhCCCcccCCcccccCccccCCcchhhhhhhccccccCCCCCCCeEEEeCCCcc------h
Q 006541 67 FMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKLPDCVVVLDTERK------S 140 (641)
Q Consensus 67 ILfV~T~~~~~~~v~~~a~~~g~~~~~vn~rW~igG~LTN~~~~kk~~~~~kk~~~g~~~~Pdlvii~d~~~~------~ 140 (641)
||+|....++...+.+...+.|.... + -++ +. .+...+. ...||.||++.-..+ .
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~-v-~~~---~~-~~~~~~~-------------~~~~dgiiisgGpg~~~~~~~~ 62 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVL-V-CRN---DE-IDLSKIK-------------NLNIRHIIISPGPGHPRDSGIS 62 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEE-E-EEC---CC-CCHHHHh-------------hCCCCEEEECCCCCChHHCcch
Confidence 89999988876666666666775432 1 111 11 1111111 135888887763321 3
Q ss_pred hHHHHHhhcCCCEEEEeCC
Q 006541 141 SVIMEAAKLQVPIVALVDS 159 (641)
Q Consensus 141 ~ai~EA~~l~IP~IalvDT 159 (641)
..+.++...++|++|||=-
T Consensus 63 ~~i~~~~~~~~PiLGIClG 81 (190)
T CHL00101 63 LDVISSYAPYIPILGVCLG 81 (190)
T ss_pred HHHHHHhcCCCcEEEEchh
Confidence 4566677789999999844
No 185
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=29.41 E-value=1.3e+02 Score=30.17 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=26.1
Q ss_pred CCCCeEEEeCCCcc--hhHHHHHhhcCCCEEEEeCCC
Q 006541 126 KLPDCVVVLDTERK--SSVIMEAAKLQVPIVALVDSS 160 (641)
Q Consensus 126 ~~Pdlvii~d~~~~--~~ai~EA~~l~IP~IalvDTn 160 (641)
+.+|.+|+.....+ ...+.++...|||+|.+ |+.
T Consensus 59 ~~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv~~-~~~ 94 (272)
T cd06300 59 QGVDAIIINPASPTALNPVIEEACEAGIPVVSF-DGT 94 (272)
T ss_pred cCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEE-ecC
Confidence 47899998776544 44688999999999988 444
No 186
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=29.28 E-value=88 Score=34.74 Aligned_cols=112 Identities=10% Similarity=0.099 Sum_probs=77.1
Q ss_pred CCCCCeeeecC----CCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEEEEecCCcccccc
Q 006541 278 FSGPKSAIEVK----NNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQQPHEKS 353 (641)
Q Consensus 278 ~~~pK~~l~v~----~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~~f~Q~~~P~~~~ 353 (641)
.||||-+-+-. +|+.-||-+++-|..|++ +++.+-..++....+-+...+++.....+|....-| .|.+.+
T Consensus 121 iDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~-~~v~~~~~~vv~~~n~~~~~ei~~~l~~~g~~~i~f----ip~~~~ 195 (378)
T COG0641 121 IDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQA-HGVDFNTLTVVNRQNVLHPEEIYHFLKSEGSKFIQF----IPLVES 195 (378)
T ss_pred ccCchHhccccccCCCCCccHHHHHHHHHHHHH-cCCcEEEEEEEchhHhhCHHHHHHHHHHcccceEEE----EecccC
Confidence 78999888765 699899999999999997 666666666666666666666666665556543444 666552
Q ss_pred CCCC--CCCccccCCCChhhHHHHHHhcChhHHHHHcCceEEEEEcCcc
Q 006541 354 FEGH--SRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYALVVDSDN 400 (641)
Q Consensus 354 ~~~~--~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi~v~nvDN 400 (641)
.+.. ...-...|-+-| +.... +++.|...+..=+++...|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~-~fl~~-----~~~~~~~~~~~~i~i~~f~~ 238 (378)
T COG0641 196 DNRGDSLLEFSVTAEEYG-QFLIA-----IFDEWVRHDVGRIFIQNFDQ 238 (378)
T ss_pred CCCCccccccccCHHHHH-HHHHH-----HHHHHHHhcCCeeeehhHHH
Confidence 2111 122334455555 55444 48899999888899988888
No 187
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=28.95 E-value=1.3e+02 Score=30.24 Aligned_cols=36 Identities=17% Similarity=0.345 Sum_probs=27.6
Q ss_pred CCCCeEEEeCCCcchhHHHHHhhcCCCEEEEeCCCCC
Q 006541 126 KLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSMP 162 (641)
Q Consensus 126 ~~Pdlvii~d~~~~~~ai~EA~~l~IP~IalvDTn~~ 162 (641)
+.+|.+|+..+..+...++++...|||+|.+ |++.+
T Consensus 54 ~~vdgii~~~~~~~~~~~~~~~~~~ipvV~~-~~~~~ 89 (268)
T cd06270 54 RRCDALILHSKALSDDELIELAAQVPPLVLI-NRHIP 89 (268)
T ss_pred cCCCEEEEecCCCCHHHHHHHhhCCCCEEEE-eccCC
Confidence 5799999987654544589999999999887 55543
No 188
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=28.46 E-value=2e+02 Score=29.03 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=24.6
Q ss_pred CCCCeEEEeCCCcchh-HHHHHhhcCCCEEEEe
Q 006541 126 KLPDCVVVLDTERKSS-VIMEAAKLQVPIVALV 157 (641)
Q Consensus 126 ~~Pdlvii~d~~~~~~-ai~EA~~l~IP~Ialv 157 (641)
+.||.+|+.....+.. .+.++...|||+|.+-
T Consensus 56 ~~vdgiI~~~~~~~~~~~~~~~~~~giPvV~~~ 88 (268)
T cd06306 56 WGADAILLGAVSPDGLNEILQQVAASIPVIALV 88 (268)
T ss_pred cCCCEEEEcCCChhhHHHHHHHHHCCCCEEEec
Confidence 5799999876544432 5899999999999883
No 189
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=27.92 E-value=3.6e+02 Score=31.91 Aligned_cols=49 Identities=16% Similarity=0.141 Sum_probs=36.5
Q ss_pred CCCeEEEeCCCcc----hhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCC
Q 006541 127 LPDCVVVLDTERK----SSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGN 176 (641)
Q Consensus 127 ~Pdlvii~d~~~~----~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~N 176 (641)
..|++|+++..-+ ..+++.|+..|+|||+|++...+|- -+..|+.|+.+
T Consensus 369 ~~~lvI~ISqSGeT~d~i~al~~ak~~Ga~~IaITn~~~S~L-a~~ad~~l~~~ 421 (640)
T PTZ00295 369 EDAGVIFISQSGETLDVVRALNLADELNLPKISVVNTVGSLI-ARSTDCGVYLN 421 (640)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCCEEEEECCCCChh-HHhcCEEEEeC
Confidence 4578888876655 3788999999999999999776551 24567777654
No 190
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=27.07 E-value=40 Score=36.73 Aligned_cols=45 Identities=24% Similarity=0.277 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhC------CCCcEEEecCccchHH-HHHHHHHcCCCCceEEEEecCCccccc
Q 006541 298 VDQVESLNSKYG------CNVPLLLMNTAETHDR-VQKVLEKYSNSKVDIHSLSLSQQPHEK 352 (641)
Q Consensus 298 ~~qi~~l~~~~g------~~iPl~iMtS~~T~~~-T~~~l~k~~~fg~~v~~f~Q~~~P~~~ 352 (641)
++.|..++++-- ...||++||+|.++.. -++. +.+|-|+++|.++
T Consensus 115 ardV~~~qkrp~~~~~~Fk~pPLlVmNgFg~~~~~HlkL----------~~t~FQNmFPsIn 166 (405)
T KOG2963|consen 115 ARDVVSLQKRPKSPNDLFKSPPLLVLNGFGTSGRKHLKL----------MTTMFQNMFPSIN 166 (405)
T ss_pred HHHHHHHHhCCCCchhhccCCCEEEEccCCCCcchhHHH----------HHHHHHHcCCCcC
Confidence 456667765432 4689999999999863 2222 3456677777776
No 191
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=26.47 E-value=1.7e+02 Score=30.54 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=27.4
Q ss_pred CCCCeEEEeCCCcc--hhHHHHHhhcCCCEEEEeCCCCC
Q 006541 126 KLPDCVVVLDTERK--SSVIMEAAKLQVPIVALVDSSMP 162 (641)
Q Consensus 126 ~~Pdlvii~d~~~~--~~ai~EA~~l~IP~IalvDTn~~ 162 (641)
+.+|.+|+..+..+ ...++++...+||+|.+ |+..+
T Consensus 53 ~~vDgIIi~~~~~~~~~~~l~~~~~~~iPvV~~-d~~~~ 90 (302)
T TIGR02634 53 RGVDVLVIIPQNGQVLSNAVQEAKDEGIKVVAY-DRLIN 90 (302)
T ss_pred cCCCEEEEeCCChhHHHHHHHHHHHCCCeEEEe-cCcCC
Confidence 56899998865543 57789999999999976 66543
No 192
>PRK05670 anthranilate synthase component II; Provisional
Probab=26.21 E-value=1.2e+02 Score=29.85 Aligned_cols=74 Identities=15% Similarity=0.112 Sum_probs=42.8
Q ss_pred eEEEEeCChhHHHHHHHHHHHhCCCcccCCcccccCccccCCcchhhhhhhccccccCCCCCCCeEEEeC----CCc---
Q 006541 66 AFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKLPDCVVVLD----TER--- 138 (641)
Q Consensus 66 ~ILfV~T~~~~~~~v~~~a~~~g~~~~~vn~rW~igG~LTN~~~~kk~~~~~kk~~~g~~~~Pdlvii~d----~~~--- 138 (641)
.||+|.+...+..-+.++..+.|..+. --+| -.. +...+.. ..||.||++. +..
T Consensus 1 ~iliid~~d~f~~~i~~~l~~~g~~~~--v~~~-~~~---~~~~~~~-------------~~~dglIlsgGpg~~~d~~~ 61 (189)
T PRK05670 1 MILLIDNYDSFTYNLVQYLGELGAEVV--VYRN-DEI---TLEEIEA-------------LNPDAIVLSPGPGTPAEAGI 61 (189)
T ss_pred CEEEEECCCchHHHHHHHHHHCCCcEE--EEEC-CCC---CHHHHHh-------------CCCCEEEEcCCCCChHHcch
Confidence 389999988877777777777786543 1223 110 1111111 2489999873 321
Q ss_pred chhHHHHHhhcCCCEEEEeCC
Q 006541 139 KSSVIMEAAKLQVPIVALVDS 159 (641)
Q Consensus 139 ~~~ai~EA~~l~IP~IalvDT 159 (641)
....+++ ...++|+.|||=-
T Consensus 62 ~~~~l~~-~~~~~PvLGIClG 81 (189)
T PRK05670 62 SLELIRE-FAGKVPILGVCLG 81 (189)
T ss_pred HHHHHHH-hcCCCCEEEECHH
Confidence 1234443 4568999999844
No 193
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=25.98 E-value=1.9e+02 Score=28.75 Aligned_cols=35 Identities=14% Similarity=0.271 Sum_probs=28.6
Q ss_pred CCCCeEEEeCCCcchhHHHHHhhcCCCEEEEeCCC
Q 006541 126 KLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSS 160 (641)
Q Consensus 126 ~~Pdlvii~d~~~~~~ai~EA~~l~IP~IalvDTn 160 (641)
+.+|.+|+.....+..++.++...|||+|.+-+..
T Consensus 54 ~~vdgiii~~~~~~~~~~~~~~~~~ipvv~~~~~~ 88 (268)
T cd01575 54 RRPAGLILTGLEHTERTRQLLRAAGIPVVEIMDLP 88 (268)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhcCCCEEEEecCC
Confidence 57899999887666678888999999999986643
No 194
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=25.75 E-value=1.1e+02 Score=32.82 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=29.6
Q ss_pred EEEcCCCCCCC---CCCCCCeeeecCCCCChHHHHHHHHHH
Q 006541 266 VKFNGALGTNM---GFSGPKSAIEVKNNLTPLDLMVDQVES 303 (641)
Q Consensus 266 v~LaGGlGTrl---G~~~pK~~l~v~~~~tfldl~~~qi~~ 303 (641)
|.-|.|+|||+ ==.-||-|+||- +|...|+.++....
T Consensus 8 ViPaAGlGTRfLPATKaiPKEMLPIv-dKP~IqYiVeEa~~ 47 (291)
T COG1210 8 VIPAAGLGTRFLPATKAIPKEMLPIV-DKPLIQYIVEEAVA 47 (291)
T ss_pred EEEccCcccccccccccCchhhcccc-CchhHHHHHHHHHH
Confidence 45678999999 235599999995 58999999998765
No 195
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=25.74 E-value=2.2e+02 Score=29.85 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=39.8
Q ss_pred CCCCCeEEEe--CCCcchhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCCChhhHHHHHHHHHHHHHHH
Q 006541 125 TKLPDCVVVL--DTERKSSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGNDSVQFVYLLCNMITKTFLV 195 (641)
Q Consensus 125 ~~~Pdlvii~--d~~~~~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~NdS~~si~~i~~ll~~ail~ 195 (641)
.+-+|.|++. |+..-..++++|...|||+|++-..-..+. ....|.-. |+...=+.....+.+.+-.
T Consensus 89 a~~~daIiv~~~d~~~~~~~v~~a~~aGIpVv~~d~~~~~~~--~~~~~vg~--dn~~~G~~~a~~l~~~~~~ 157 (322)
T COG1879 89 AQGVDAIIINPVDPDALTPAVKKAKAAGIPVVTVDSDIPGPG--DRVAYVGS--DNYKAGRLAAEYLAKALGG 157 (322)
T ss_pred HcCCCEEEEcCCChhhhHHHHHHHHHCCCcEEEEecCCCCCC--ceeEEEec--CcHHHHHHHHHHHHHHhCC
Confidence 4789999984 455556899999999999987644433322 13444444 4333333333344444433
No 196
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=25.24 E-value=2e+02 Score=28.60 Aligned_cols=73 Identities=12% Similarity=0.078 Sum_probs=39.2
Q ss_pred EEEEeCChhHHHHHHHHHHHhCCCcccCCcccccCccccCCcchhhhhhhccccccCCCCCCCeEEEeCCCcc------h
Q 006541 67 FMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKLPDCVVVLDTERK------S 140 (641)
Q Consensus 67 ILfV~T~~~~~~~v~~~a~~~g~~~~~vn~rW~igG~LTN~~~~kk~~~~~kk~~~g~~~~Pdlvii~d~~~~------~ 140 (641)
||+|.+...+..-+....++.|.... --++ .-+....++ ...||.||+..--.+ .
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~--v~~~----~~~~~~~~~-------------~~~~d~iIlsgGP~~p~~~~~~ 62 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELV--VKRN----DEVTISDIE-------------NMKPDFLMISPGPCSPNEAGIS 62 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEE--EEeC----CCCCHHHHh-------------hCCCCEEEECCCCCChHhCCCc
Confidence 78999987765555555566676432 1122 111111111 135888888762211 1
Q ss_pred hHHHHHhhcCCCEEEEeC
Q 006541 141 SVIMEAAKLQVPIVALVD 158 (641)
Q Consensus 141 ~ai~EA~~l~IP~IalvD 158 (641)
..+.++...++|+.|||=
T Consensus 63 ~~~i~~~~~~~PvLGICl 80 (195)
T PRK07649 63 MEVIRYFAGKIPIFGVCL 80 (195)
T ss_pred hHHHHHhcCCCCEEEEcH
Confidence 222233456899999984
No 197
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.08 E-value=2.1e+02 Score=29.14 Aligned_cols=84 Identities=11% Similarity=0.118 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCeEEEEe-CChhHHHHHHHHHHHhCCCcccCCcccccCccccCCcchhhhhhhccccccCCCCCCCe
Q 006541 52 NACHFISLLARQRAAFMFVN-TNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKLPDC 130 (641)
Q Consensus 52 ~A~~~i~~i~~~~g~ILfV~-T~~~~~~~v~~~a~~~g~~~~~vn~rW~igG~LTN~~~~kk~~~~~kk~~~g~~~~Pdl 130 (641)
.|......+...|=+++=|. +.+...+.|+++.++... .+.--||.|+..+.+.. ..-..
T Consensus 28 ~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~-------~~IGAGTVl~~~~a~~a------------~~aGA 88 (212)
T PRK05718 28 DAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPE-------ALIGAGTVLNPEQLAQA------------IEAGA 88 (212)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCC-------CEEEEeeccCHHHHHHH------------HHcCC
Confidence 44555555555555555444 456777888888776543 23134999988765542 12233
Q ss_pred EEEeCCCcchhHHHHHhhcCCCEE
Q 006541 131 VVVLDTERKSSVIMEAAKLQVPIV 154 (641)
Q Consensus 131 vii~d~~~~~~ai~EA~~l~IP~I 154 (641)
=|++.|.-+...++.|.+.+||.+
T Consensus 89 ~FivsP~~~~~vi~~a~~~~i~~i 112 (212)
T PRK05718 89 QFIVSPGLTPPLLKAAQEGPIPLI 112 (212)
T ss_pred CEEECCCCCHHHHHHHHHcCCCEe
Confidence 367888888899999999999987
No 198
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=24.95 E-value=8.4e+02 Score=26.80 Aligned_cols=123 Identities=15% Similarity=0.157 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCChhHHHHHHHHHHHhCCCcccCCcccccCccccCCcchhhhhhhccccccCCCC
Q 006541 47 LICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTK 126 (641)
Q Consensus 47 ~~~L~~A~~~i~~i~~~~g~ILfV~T~~~~~~~v~~~a~~~g~~~~~vn~rW~igG~LTN~~~~kk~~~~~kk~~~g~~~ 126 (641)
+..|.+|+..+..- ..+-++.++|..+... -+++.++..|-.- +-.| -|.+++...... ..
T Consensus 237 ~~~ll~a~~~l~~~-~~~~~l~ivG~G~~~~-~l~~~~~~~~l~~---~V~~--~G~~~~~el~~~------------l~ 297 (406)
T PRK15427 237 LHVAIEACRQLKEQ-GVAFRYRILGIGPWER-RLRTLIEQYQLED---VVEM--PGFKPSHEVKAM------------LD 297 (406)
T ss_pred HHHHHHHHHHHHhh-CCCEEEEEEECchhHH-HHHHHHHHcCCCC---eEEE--eCCCCHHHHHHH------------HH
Confidence 34444555444321 1233677888776543 3456666665321 1234 344443221111 14
Q ss_pred CCCeEEEeCCC-------cchhHHHHHhhcCCCEEEEeCCCCCCCCC--CceEEeecCCChhhHHHHHHHHH
Q 006541 127 LPDCVVVLDTE-------RKSSVIMEAAKLQVPIVALVDSSMPLDVY--SKITYPVPGNDSVQFVYLLCNMI 189 (641)
Q Consensus 127 ~Pdlvii~d~~-------~~~~ai~EA~~l~IP~IalvDTn~~~~~~--~~IdypIP~NdS~~si~~i~~ll 189 (641)
.-|+.++.... .-..++.||..+|+|||+- |...-++.. ..--+-+|.+|.-.....+..++
T Consensus 298 ~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t-~~~g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~ 368 (406)
T PRK15427 298 DADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVST-LHSGIPELVEADKSGWLVPENDAQALAQRLAAFS 368 (406)
T ss_pred hCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEe-CCCCchhhhcCCCceEEeCCCCHHHHHHHHHHHH
Confidence 56777765431 2247899999999999985 444444311 01235677776433334433333
No 199
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=24.89 E-value=1.5e+02 Score=28.47 Aligned_cols=73 Identities=16% Similarity=0.101 Sum_probs=44.1
Q ss_pred CCeEEEEeCChhHHHHHHHHHHHhCCCcccCCcccccCccccCCcchhhhhhhccccccCCCCCCCeEEEeCCCcchh-H
Q 006541 64 RAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKLPDCVVVLDTERKSS-V 142 (641)
Q Consensus 64 ~g~ILfV~T~~~~~~~v~~~a~~~g~~~~~vn~rW~igG~LTN~~~~kk~~~~~kk~~~g~~~~Pdlvii~d~~~~~~-a 142 (641)
+..+++|++.|...+-+....+.-+..++.. -++....- .+ ..-.||+++.+|+..... .
T Consensus 24 ~~~~~IvgaGPSL~~~i~~lk~~~~~~~iia------~~sa~~~L-~~------------~gI~Pd~~v~~D~~~~~~~~ 84 (170)
T PF01973_consen 24 GKPAIIVGAGPSLDKNIELLKENRNKAIIIA------VNSALKAL-LK------------NGIKPDFVVSIDPQFWNYEH 84 (170)
T ss_pred CCeEEEEecCCCHHHHHHHHHhcccCcEEEE------ecHHHHHH-HH------------cCceEEEEEEcCCCcchHHH
Confidence 4899999999998887776655555544411 12111110 00 124899999999854443 3
Q ss_pred HHHHhhc-CCCEEE
Q 006541 143 IMEAAKL-QVPIVA 155 (641)
Q Consensus 143 i~EA~~l-~IP~Ia 155 (641)
..|..+. .||.+.
T Consensus 85 ~~~~~~~~~i~l~~ 98 (170)
T PF01973_consen 85 FKEINKEFDIPLFF 98 (170)
T ss_pred HhhcccccceEEEE
Confidence 6666665 566554
No 200
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=24.58 E-value=1.1e+02 Score=25.31 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=25.5
Q ss_pred CCCCeEEEeCCCcc----hhHHHHHhhcCCCEEEEe
Q 006541 126 KLPDCVVVLDTERK----SSVIMEAAKLQVPIVALV 157 (641)
Q Consensus 126 ~~Pdlvii~d~~~~----~~ai~EA~~l~IP~Ialv 157 (641)
..-|++|+++...+ ..++++|+..|.|+|+++
T Consensus 46 ~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 46 RKGDVVIALSYSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 45688888875543 467889999999999998
No 201
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=24.43 E-value=3.4e+02 Score=32.84 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=48.8
Q ss_pred cCCeEEEEeCChhHHHHHHHHHHHhCCCcccCCcccccCccccCCcchhhhhhhccccccCCCCCCCeEEEeC----CC-
Q 006541 63 QRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKLPDCVVVLD----TE- 137 (641)
Q Consensus 63 ~~g~ILfV~T~~~~~~~v~~~a~~~g~~~~~vn~rW~igG~LTN~~~~kk~~~~~kk~~~g~~~~Pdlvii~d----~~- 137 (641)
.+.+|++|.....+...+..+.++.|.... .-++ +...... ....||.||++. |.
T Consensus 515 ~~~~IlVID~gds~~~~l~~~L~~~G~~v~--vv~~--------~~~~~~~----------~~~~~DgLILsgGPGsp~d 574 (717)
T TIGR01815 515 EGRRILLVDHEDSFVHTLANYLRQTGASVT--TLRH--------SHAEAAF----------DERRPDLVVLSPGPGRPAD 574 (717)
T ss_pred CCCEEEEEECCChhHHHHHHHHHHCCCeEE--EEEC--------CCChhhh----------hhcCCCEEEEcCCCCCchh
Confidence 567899999887766677777778886543 1122 1110000 013578888752 21
Q ss_pred -cchhHHHHHhhcCCCEEEEeCC
Q 006541 138 -RKSSVIMEAAKLQVPIVALVDS 159 (641)
Q Consensus 138 -~~~~ai~EA~~l~IP~IalvDT 159 (641)
.....|+++...++|+.|||=-
T Consensus 575 ~~~~~~I~~~~~~~iPvLGICLG 597 (717)
T TIGR01815 575 FDVAGTIDAALARGLPVFGVCLG 597 (717)
T ss_pred cccHHHHHHHHHCCCCEEEECHH
Confidence 2356888999999999999943
No 202
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=23.78 E-value=5.6e+02 Score=26.35 Aligned_cols=50 Identities=26% Similarity=0.246 Sum_probs=28.6
Q ss_pred CCCeEEEeCCC-cchhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCCC
Q 006541 127 LPDCVVVLDTE-RKSSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGND 177 (641)
Q Consensus 127 ~Pdlvii~d~~-~~~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~Nd 177 (641)
.-|++++..-. .-...+.||..+|+|+|+ .|.....+......+-++.||
T Consensus 262 ~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~-~~~~~~~e~i~~~g~~~~~~~ 312 (360)
T cd04951 262 AADLFVLSSAWEGFGLVVAEAMACELPVVA-TDAGGVREVVGDSGLIVPISD 312 (360)
T ss_pred hhceEEecccccCCChHHHHHHHcCCCEEE-ecCCChhhEecCCceEeCCCC
Confidence 44665543322 125788999999999997 454444332112245555565
No 203
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.06 E-value=2.4e+02 Score=28.16 Aligned_cols=35 Identities=17% Similarity=0.329 Sum_probs=26.0
Q ss_pred CCCCeEEEeCCCcc--hhHHHHHhhcCCCEEEEeCCCC
Q 006541 126 KLPDCVVVLDTERK--SSVIMEAAKLQVPIVALVDSSM 161 (641)
Q Consensus 126 ~~Pdlvii~d~~~~--~~ai~EA~~l~IP~IalvDTn~ 161 (641)
+.+|.+|+.....+ ...+.++...+||+|.+ |++.
T Consensus 55 ~~vdgiii~~~~~~~~~~~l~~~~~~~iPvV~~-~~~~ 91 (275)
T cd06317 55 QKVDGIILWPTDGQAYIPGLRKAKQAGIPVVIT-NSNI 91 (275)
T ss_pred cCCCEEEEecCCccccHHHHHHHHHCCCcEEEe-CCCC
Confidence 46899988765544 36789999999999954 6544
No 204
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=22.89 E-value=4.2e+02 Score=31.24 Aligned_cols=105 Identities=13% Similarity=0.226 Sum_probs=66.8
Q ss_pred eHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCChh----HHHHHHHHHHHhCCCcccCCcccccCccccCCc-----chhh
Q 006541 42 DSDKTLICLRNACHFISLLARQRAAFMFVNTNPL----FDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSS-----SPKK 112 (641)
Q Consensus 42 dl~~T~~~L~~A~~~i~~i~~~~g~ILfV~T~~~----~~~~v~~~a~~~g~~~~~vn~rW~igG~LTN~~-----~~kk 112 (641)
|+ ..+.-+.+|+..|.....++.+|+++|--.. +.-++.++.++.|...+ .+++|--++.-+ .+.+
T Consensus 48 ~P-~~l~~m~~a~~ri~~ai~~~e~I~I~gDyD~DGitstail~~~L~~~g~~~~----~~~IP~R~~eGYGl~~~~i~~ 122 (575)
T PRK11070 48 PW-QQLSGIEKAVELLYNALREGTRIIVVGDFDADGATSTALSVLALRSLGCSNV----DYLVPNRFEDGYGLSPEVVDQ 122 (575)
T ss_pred Ch-HHhhCHHHHHHHHHHHHHCCCEEEEEEecCccHHHHHHHHHHHHHHcCCCce----EEEeCCCCcCCCCCCHHHHHH
Confidence 44 4467788888888888889999999986432 34455677777876211 122342222222 1221
Q ss_pred hhhhccccccCCCCCCCeEEEeCCCcc-hhHHHHHhhcCCCEEEEeCCCCC
Q 006541 113 FRSRNKKIRFGPTKLPDCVVVLDTERK-SSVIMEAAKLQVPIVALVDSSMP 162 (641)
Q Consensus 113 ~~~~~kk~~~g~~~~Pdlvii~d~~~~-~~ai~EA~~l~IP~IalvDTn~~ 162 (641)
+. ..-++++|.+|.-.. ..++..|+.+||.+| ++|=..+
T Consensus 123 ~~----------~~~~~LiItvD~Gi~~~e~i~~a~~~gidvI-VtDHH~~ 162 (575)
T PRK11070 123 AH----------ARGAQLIVTVDNGISSHAGVAHAHALGIPVL-VTDHHLP 162 (575)
T ss_pred HH----------hcCCCEEEEEcCCcCCHHHHHHHHHCCCCEE-EECCCCC
Confidence 10 135789999997654 568999999999986 5675543
No 205
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=22.75 E-value=2.1e+02 Score=28.47 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=26.7
Q ss_pred CCCCeEEEeCCCcchhHHHHHhhcCCCEEEEeCCCC
Q 006541 126 KLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSM 161 (641)
Q Consensus 126 ~~Pdlvii~d~~~~~~ai~EA~~l~IP~IalvDTn~ 161 (641)
..+|.+|+..+..+..++.++...|||+|.+ |+..
T Consensus 55 ~~vdgiii~~~~~~~~~~~~~~~~~ipvv~~-~~~~ 89 (264)
T cd01574 55 QRVDGVIVNAPLDDADAALAAAPADVPVVFV-DGSP 89 (264)
T ss_pred cCCCEEEEeCCCCChHHHHHHHhcCCCEEEE-eccC
Confidence 4789999887765555677788889999997 5543
No 206
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=22.67 E-value=9.7e+02 Score=25.70 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=35.3
Q ss_pred CCCCeEEEeCCCcc----hhHHHHHhhcCCCEEEEeCCCCCCCCC----CceEEeecCCC
Q 006541 126 KLPDCVVVLDTERK----SSVIMEAAKLQVPIVALVDSSMPLDVY----SKITYPVPGND 177 (641)
Q Consensus 126 ~~Pdlvii~d~~~~----~~ai~EA~~l~IP~IalvDTn~~~~~~----~~IdypIP~Nd 177 (641)
...|++|+++..-+ ..+++.|.+.|.++|++++. .+.... ....+.||.+.
T Consensus 65 ~~~dlvI~iS~SG~t~e~~~a~~~A~~~g~~ii~iT~~-g~L~~~a~~~~~~~i~vP~~~ 123 (308)
T TIGR02128 65 DGKTLLIAVSYSGNTEETLSAVEEAKKKGAKVIAITSG-GRLEEMAKERGLDVIKIPKGL 123 (308)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHcCCEEEEECCC-cHHHHHHHhcCCeEEEcCCCC
Confidence 46678888886654 36788999999999999973 211100 02467789987
No 207
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=22.66 E-value=2.9e+02 Score=27.73 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=25.0
Q ss_pred CCCCeEEEeCCCcc--hhHHHHHhhcCCCEEEEeCCCC
Q 006541 126 KLPDCVVVLDTERK--SSVIMEAAKLQVPIVALVDSSM 161 (641)
Q Consensus 126 ~~Pdlvii~d~~~~--~~ai~EA~~l~IP~IalvDTn~ 161 (641)
+.+|.+|+.....+ ...++++.. +||+|.+ |++.
T Consensus 54 ~~vDgiIi~~~~~~~~~~~l~~~~~-~ipvV~~-~~~~ 89 (271)
T cd06314 54 EGVDGIAISPIDPKAVIPALNKAAA-GIKLITT-DSDA 89 (271)
T ss_pred cCCCEEEEecCChhHhHHHHHHHhc-CCCEEEe-cCCC
Confidence 57899888765433 467888888 9999887 5443
No 208
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=22.35 E-value=1.1e+02 Score=29.55 Aligned_cols=32 Identities=16% Similarity=0.376 Sum_probs=23.2
Q ss_pred CCCCCeEEEeCCCcchhHHHHHhhcCCCEEEE
Q 006541 125 TKLPDCVVVLDTERKSSVIMEAAKLQVPIVAL 156 (641)
Q Consensus 125 ~~~Pdlvii~d~~~~~~ai~EA~~l~IP~Ial 156 (641)
...||+||..........+....++|||++.+
T Consensus 67 ~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i 98 (186)
T cd01141 67 ALKPDLVILYGGFQAQTILDKLEQLGIPVLYV 98 (186)
T ss_pred ccCCCEEEEecCCCchhHHHHHHHcCCCEEEe
Confidence 35899999855433323667778999999887
No 209
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=22.22 E-value=2.1e+02 Score=28.80 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=27.1
Q ss_pred CCCCeEEEeCCCcchhHHHHHhhcCCCEEEEeCCC
Q 006541 126 KLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSS 160 (641)
Q Consensus 126 ~~Pdlvii~d~~~~~~ai~EA~~l~IP~IalvDTn 160 (641)
..+|.+|+.....+..++.++...|+|+|.+ |+.
T Consensus 54 ~~vdgvi~~~~~~~~~~~~~l~~~~iPvv~~-~~~ 87 (269)
T cd06297 54 YLTDGLLLASYDLTERLAERRLPTERPVVLV-DAE 87 (269)
T ss_pred cCCCEEEEecCccChHHHHHHhhcCCCEEEE-ccC
Confidence 4689988887666677788899999999887 553
No 210
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=21.95 E-value=2.8e+02 Score=28.10 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=24.8
Q ss_pred CCCCeEEEeCCC--cchhHHHHHhhcCCCEEEEe
Q 006541 126 KLPDCVVVLDTE--RKSSVIMEAAKLQVPIVALV 157 (641)
Q Consensus 126 ~~Pdlvii~d~~--~~~~ai~EA~~l~IP~Ialv 157 (641)
+.+|.+|+.... ....+++++...|||+|.+-
T Consensus 53 ~~~dgiii~~~~~~~~~~~~~~~~~~~iPvV~~~ 86 (289)
T cd01540 53 QGAKGFVICVPDVKLGPAIVAKAKAYNMKVVAVD 86 (289)
T ss_pred cCCCEEEEccCchhhhHHHHHHHHhCCCeEEEec
Confidence 468999887654 23567899999999999863
No 211
>PRK13566 anthranilate synthase; Provisional
Probab=21.48 E-value=2.4e+02 Score=34.14 Aligned_cols=77 Identities=14% Similarity=0.162 Sum_probs=51.2
Q ss_pred cCCeEEEEeCChhHHHHHHHHHHHhCCCcccCCcccccCccccCCcchhhhhhhccccccCCCCCCCeEEEeCCC-----
Q 006541 63 QRAAFMFVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSRNKKIRFGPTKLPDCVVVLDTE----- 137 (641)
Q Consensus 63 ~~g~ILfV~T~~~~~~~v~~~a~~~g~~~~~vn~rW~igG~LTN~~~~kk~~~~~kk~~~g~~~~Pdlvii~d~~----- 137 (641)
++.+||+|.....+...+.++.+..|.... .-+|-.. -..+. ...||.||++.-.
T Consensus 525 ~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~--vv~~~~~-----~~~~~-------------~~~~DgVVLsgGpgsp~d 584 (720)
T PRK13566 525 EGKRVLLVDHEDSFVHTLANYFRQTGAEVT--TVRYGFA-----EEMLD-------------RVNPDLVVLSPGPGRPSD 584 (720)
T ss_pred CCCEEEEEECCCchHHHHHHHHHHCCCEEE--EEECCCC-----hhHhh-------------hcCCCEEEECCCCCChhh
Confidence 456899999988777777888888887653 1233010 00011 1368888876311
Q ss_pred -cchhHHHHHhhcCCCEEEEeCC
Q 006541 138 -RKSSVIMEAAKLQVPIVALVDS 159 (641)
Q Consensus 138 -~~~~ai~EA~~l~IP~IalvDT 159 (641)
.....+++|...++|+.|||=-
T Consensus 585 ~~~~~lI~~a~~~~iPILGIClG 607 (720)
T PRK13566 585 FDCKATIDAALARNLPIFGVCLG 607 (720)
T ss_pred CCcHHHHHHHHHCCCcEEEEehh
Confidence 2467899999999999999954
No 212
>PF04227 Indigoidine_A: Indigoidine synthase A like protein; InterPro: IPR007342 Members of this entry catalyze the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil. It is also reported to be involved in the synthesis of indigoidine, which is a blue pigment synthesised by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 1VKM_C.
Probab=21.46 E-value=78 Score=33.96 Aligned_cols=30 Identities=13% Similarity=0.039 Sum_probs=20.5
Q ss_pred ccchHHHHHHHHHcCCCCceEEEEecCCccccc
Q 006541 320 AETHDRVQKVLEKYSNSKVDIHSLSLSQQPHEK 352 (641)
Q Consensus 320 ~~T~~~T~~~l~k~~~fg~~v~~f~Q~~~P~~~ 352 (641)
.-....|++|||.+ |+.|..|.++.+|++.
T Consensus 154 ILDi~~TLE~LET~---GV~Vvgy~t~~fPaFy 183 (293)
T PF04227_consen 154 ILDIPKTLEYLETQ---GVPVVGYGTDEFPAFY 183 (293)
T ss_dssp TS-HHHHHHHHHHT---T--EEEES-SB--BTT
T ss_pred hhchHHHHHHhhcC---CeEEEEecCCCCCeee
Confidence 34558999999985 7889999999999998
No 213
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=21.28 E-value=4.8e+02 Score=26.61 Aligned_cols=95 Identities=13% Similarity=0.165 Sum_probs=57.4
Q ss_pred cCCCCChHHHHHHHHHHHHhhhCCCCcEEEecCccchHHHHHHHHHcCCCCceEEEEecCCccccccCCCCCCCccccCC
Q 006541 287 VKNNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQQPHEKSFEGHSRKDKLYPS 366 (641)
Q Consensus 287 v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~k~~~fg~~v~~f~Q~~~P~~~~~~~~~~~~~~~P~ 366 (641)
+++|||-| +.+-+++|+.+| ++.+++-+--..+=.++|.++ .|..+.-. ..++. |
T Consensus 22 ~GSGKTaL--ie~~~~~L~~~~----~~aVI~~Di~t~~Da~~l~~~--~g~~i~~v-------------~TG~~--C-- 76 (202)
T COG0378 22 PGSGKTAL--IEKTLRALKDEY----KIAVITGDIYTKEDADRLRKL--PGEPIIGV-------------ETGKG--C-- 76 (202)
T ss_pred CCcCHHHH--HHHHHHHHHhhC----CeEEEeceeechhhHHHHHhC--CCCeeEEe-------------ccCCc--c--
Confidence 66888854 334466666665 677777776555555666664 44432111 11111 2
Q ss_pred CChhhHHHHHHhcChhHHHHHcC--ceEEEEEcCcccccccCHHHHH
Q 006541 367 SDHSVVFLSLMKSGTLDLLLVQG--KEYALVVDSDNVAAVADPKIFN 411 (641)
Q Consensus 367 GhG~di~~aL~~sG~Ld~l~~~G--~eyi~v~nvDNL~~~~Dp~~lg 411 (641)
|= |-+-.++. +++|..++ .+.+||=|+-||+++++|.+-.
T Consensus 77 -H~-da~m~~~a---i~~l~~~~~~~Dll~iEs~GNL~~~~sp~L~d 118 (202)
T COG0378 77 -HL-DASMNLEA---IEELVLDFPDLDLLFIESVGNLVCPFSPDLGD 118 (202)
T ss_pred -CC-cHHHHHHH---HHHHhhcCCcCCEEEEecCcceecccCcchhh
Confidence 23 44444433 56666665 5899999999999999996543
No 214
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=21.15 E-value=3.2e+02 Score=27.12 Aligned_cols=35 Identities=20% Similarity=0.388 Sum_probs=27.4
Q ss_pred CCCCeEEEeCCCcchhHHHHHhhcCCCEEEEeCCCC
Q 006541 126 KLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSM 161 (641)
Q Consensus 126 ~~Pdlvii~d~~~~~~ai~EA~~l~IP~IalvDTn~ 161 (641)
.-.|.+|+.....+...++++.+.|||+|.+ |++.
T Consensus 54 ~~vdgiIi~~~~~~~~~~~~l~~~~ipvV~~-~~~~ 88 (265)
T cd06299 54 QRVDGIIVVPHEQSAEQLEDLLKRGIPVVFV-DREI 88 (265)
T ss_pred cCCCEEEEcCCCCChHHHHHHHhCCCCEEEE-eccc
Confidence 4789999887665667789999999999865 5543
No 215
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family. Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.
Probab=20.96 E-value=1.1e+03 Score=25.79 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=26.6
Q ss_pred CCeEEEeCCCcch----hHHHHHhhc--CCCEEEEeCCCCC
Q 006541 128 PDCVVVLDTERKS----SVIMEAAKL--QVPIVALVDSSMP 162 (641)
Q Consensus 128 Pdlvii~d~~~~~----~ai~EA~~l--~IP~IalvDTn~~ 162 (641)
.+++|.+.+.-+. .|++.|+.. |+++||+++....
T Consensus 93 ~~lvi~iSqSGeT~etv~a~~~ak~~~~g~~~i~it~~~~s 133 (372)
T TIGR02815 93 PTLLVSFARSGNSPESVAAVELADQLLPECYHLVLTCNEEG 133 (372)
T ss_pred CeEEEEEeCCcCcHHHHHHHHHHHHhCCCCcEEEEEcCCCC
Confidence 3678888876653 677888887 8999999986443
No 216
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.96 E-value=2.6e+02 Score=27.65 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=30.8
Q ss_pred CCCCeEEEeCCCcc-hhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecCC
Q 006541 126 KLPDCVVVLDTERK-SSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGN 176 (641)
Q Consensus 126 ~~Pdlvii~d~~~~-~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~N 176 (641)
+.+|.+|+.....+ ..+++++...|||+|.+ |+..+.. .++|.-+-|
T Consensus 54 ~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~---~~~~v~~d~ 101 (268)
T cd06289 54 HGVAGIILCPAAGTSPDLLKRLAESGIPVVLV-AREVAGA---PFDYVGPDN 101 (268)
T ss_pred cCCCEEEEeCCCCccHHHHHHHHhcCCCEEEE-eccCCCC---CCCEEeecc
Confidence 46899998876543 24789999999999987 4443321 345544433
No 217
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.89 E-value=1.2e+02 Score=30.36 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=27.4
Q ss_pred CCCCeEEEeCCCcchhHHHHHhhcCCCEEEEeCCC
Q 006541 126 KLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSS 160 (641)
Q Consensus 126 ~~Pdlvii~d~~~~~~ai~EA~~l~IP~IalvDTn 160 (641)
..+|.+|+..+..+...++++...+||+|.+ |.+
T Consensus 54 ~~~dgiii~~~~~~~~~~~~~~~~~iPvv~~-~~~ 87 (265)
T cd06285 54 RRVDGLILGDARSDDHFLDELTRRGVPFVLV-LRH 87 (265)
T ss_pred cCCCEEEEecCCCChHHHHHHHHcCCCEEEE-ccC
Confidence 4689999887776777889999999999766 554
No 218
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=20.77 E-value=2.5e+02 Score=27.43 Aligned_cols=35 Identities=20% Similarity=0.419 Sum_probs=28.0
Q ss_pred CCCCeEEEeCCCcchhHHHHHhhcCCCEEEEeCCCC
Q 006541 126 KLPDCVVVLDTERKSSVIMEAAKLQVPIVALVDSSM 161 (641)
Q Consensus 126 ~~Pdlvii~d~~~~~~ai~EA~~l~IP~IalvDTn~ 161 (641)
+.+|.+++.........+.++...|||+|++ |+..
T Consensus 54 ~~~d~iii~~~~~~~~~~~~~~~~~ipvv~~-~~~~ 88 (264)
T cd06267 54 RRVDGIILAPSRLDDELLEELAALGIPVVLV-DRPL 88 (264)
T ss_pred cCcCEEEEecCCcchHHHHHHHHcCCCEEEe-cccc
Confidence 5789999888776666689999999999987 4443
No 219
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=20.70 E-value=2.3e+02 Score=28.34 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=25.9
Q ss_pred CCCCeEEEeCCCc--chhHHHHHhhcCCCEEEEeCCCC
Q 006541 126 KLPDCVVVLDTER--KSSVIMEAAKLQVPIVALVDSSM 161 (641)
Q Consensus 126 ~~Pdlvii~d~~~--~~~ai~EA~~l~IP~IalvDTn~ 161 (641)
+.+|.+|+..+.. ....++++...|||+|.+ |+..
T Consensus 54 ~~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~-~~~~ 90 (273)
T cd06305 54 QKVDAIIIQHGRAEVLKPWVKRALDAGIPVVAF-DVDS 90 (273)
T ss_pred cCCCEEEEecCChhhhHHHHHHHHHcCCCEEEe-cCCC
Confidence 4689999876543 356689999999999866 5543
No 220
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=20.22 E-value=7.4e+02 Score=29.73 Aligned_cols=48 Identities=10% Similarity=-0.002 Sum_probs=33.2
Q ss_pred CCCeEEEeCCCcc----hhHHHHHhhcCCCEEEEeCCCCCCCCCCceEEeecC
Q 006541 127 LPDCVVVLDTERK----SSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPG 175 (641)
Q Consensus 127 ~Pdlvii~d~~~~----~~ai~EA~~l~IP~IalvDTn~~~~~~~~IdypIP~ 175 (641)
..|++|+++..-+ ..|++.|+..|.|||+|++....+ +-+..|+.|+.
T Consensus 410 ~~~lvI~ISqSGeT~eti~Al~~Ak~~Ga~~IaITn~~~S~-La~~ad~~i~~ 461 (680)
T PLN02981 410 REDTAVFVSQSGETADTLRALEYAKENGALCVGITNTVGSA-ISRGTHCGVHI 461 (680)
T ss_pred CCCeEEEEeCCcCCHHHHHHHHHHHHCCCcEEEEECCCCCh-hHhccCeeEEe
Confidence 3578888876554 378899999999999998774433 11345665553
No 221
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=20.09 E-value=3e+02 Score=28.20 Aligned_cols=83 Identities=12% Similarity=0.164 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhcCCeEE-EEeCChhHHHHHHHHHHHhCCCcccCCcccccC-ccccCCcchhhhhhhccccccCCCCCCC
Q 006541 52 NACHFISLLARQRAAFM-FVNTNPLFDEIVLQMTQKIGCYNPNMNALWRMG-GFLTNSSSPKKFRSRNKKIRFGPTKLPD 129 (641)
Q Consensus 52 ~A~~~i~~i~~~~g~IL-fV~T~~~~~~~v~~~a~~~g~~~~~vn~rW~ig-G~LTN~~~~kk~~~~~kk~~~g~~~~Pd 129 (641)
.|+.....+++.|=..+ +--+.+...++|+.+++....-. +| ||..|..+.... ..-.
T Consensus 26 ~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~l--------IGAGTVL~~~q~~~a------------~~aG 85 (211)
T COG0800 26 EALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEAL--------IGAGTVLNPEQARQA------------IAAG 85 (211)
T ss_pred HHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccE--------EccccccCHHHHHHH------------HHcC
Confidence 45566666665555543 44456788999999999888322 45 999998876432 2444
Q ss_pred eEEEeCCCcchhHHHHHhhcCCCEE
Q 006541 130 CVVVLDTERKSSVIMEAAKLQVPIV 154 (641)
Q Consensus 130 lvii~d~~~~~~ai~EA~~l~IP~I 154 (641)
.=|++.|.-+...++-|...+||++
T Consensus 86 a~fiVsP~~~~ev~~~a~~~~ip~~ 110 (211)
T COG0800 86 AQFIVSPGLNPEVAKAANRYGIPYI 110 (211)
T ss_pred CCEEECCCCCHHHHHHHHhCCCccc
Confidence 5588999999999999999999985
Done!