Query 006541
Match_columns 641
No_of_seqs 291 out of 1644
Neff 6.1
Searched_HMMs 29240
Date Tue Mar 26 18:43:12 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006541.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2168-2172//hhsearch_pdb/006541hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r3i_A UTP--glucose-1-phosphat 1.0 1 1 919.4 29.3 408 232-641 98-525 (528)
2 3gue_A UTP-glucose-1-phosphate 1.0 1 1 890.3 31.5 394 239-638 57-484 (484)
3 2icy_A Probable UTP-glucose-1- 1.0 1 1 775.5 37.5 409 232-641 49-469 (469)
4 2oeg_A UTP-glucose-1-phosphate 1.0 1 1 756.1 29.9 393 238-637 56-488 (505)
5 2i5k_A UTP--glucose-1-phosphat 1.0 1 1 741.9 34.9 404 232-641 66-485 (488)
6 3ogz_A UDP-sugar pyrophosphory 1.0 1 1 674.3 22.9 370 254-634 106-572 (630)
7 3oc9_A UDP-N-acetylglucosamine 1.0 1 1 588.4 23.5 315 253-573 24-384 (405)
8 2yqc_A UDP-N-acetylglucosamine 1.0 1 1 559.5 21.4 334 235-570 72-469 (486)
9 1jv1_A Glcnac1P uridyltransfer 1.0 1 1 531.5 26.0 321 232-554 69-435 (505)
10 2vqe_B 30S ribosomal protein S 1.0 1 1 403.5 7.1 195 6-206 5-235 (256)
No 1
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A
Probab=1.00 E-value=1 Score=919.39 Aligned_cols=408 Identities=39% Similarity=0.663 Sum_probs=387.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 46788875102778678740089899640768999983898787899899711453899973789889999998561998
Q 006541 232 IDSKDEILVVPYESLASISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCN 311 (641)
Q Consensus 232 i~~~~~~~~~~y~~l~~~~~~~~~~~~~l~k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~ 311 (641)
|.+++++.+.+|++|+..+++ +....+++|+|||+||||||||||+++|||++||++|+||||++++||++++++||+.
T Consensus 98 i~p~p~~~~~~~~~l~~~~~~-~~~~~~l~kvavvlLaGGlGTRLG~~~PK~~i~V~sgktflql~~eqI~~l~~~~g~~ 176 (528)
T 3r3i_A 98 IQRPPEDSIQPYEKIKARGLP-DNISSVLNKLVVVKLNGGLGTSMGCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTD 176 (528)
T ss_dssp CCCCCTTTSEEHHHHTTSCCC-CSSCTTCTTEEEEEECCCBCTTTTCSSBGGGSEEETTEEHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHCCCHHHCCCCCCC-CHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 738988985487665775444-2346520766899957887444689988511024999819999999999999972999
Q ss_pred CCEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC----CC------CCCCCCCCCCCHHHHHHHHHHCCH
Q ss_conf 74898068532488999999739999528998449844102679----99------887611578892137899972390
Q 006541 312 VPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQQPHEKSFE----GH------SRKDKLYPSSDHSVVFLSLMKSGT 381 (641)
Q Consensus 312 iPl~iMtS~~T~~~T~~~l~~~~~fg~~i~~f~Q~~~P~l~~~~----~~------~~~~~~~P~GhG~di~~aL~~sG~ 381 (641)
|||+||||+.||++|++||++|++||.+|++|+|+++||++..+ +. +++++|+||||| |+|.+|++||+
T Consensus 177 IPl~IMTS~~T~~~T~~~f~k~~~fg~~V~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhG-diy~aL~~sGl 255 (528)
T 3r3i_A 177 VPLVLMNSFNTDEDTKKILQKYNHCRVKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHG-DIYASFYNSGL 255 (528)
T ss_dssp CCEEEEECTTTHHHHHSSCGGGTTSSCCEEEEECCCBCCEETTTCCCC-------------CBCCBTT-THHHHHHHHSH
T ss_pred CCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEECCEEEEECCCCEECCCCCCCCCCCCEEECCCCCH-HHHHHHHHCCH
T ss_conf 88899956531699999999667668876999818743694588533246445577752104768975-99999887882
Q ss_pred HHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHC----CCCEEEEEECCCCCCCCCEEEEEECCEEEEEEECCCCCCCC
Q ss_conf 69998749369999727645644397888887652----98468997006888974318995399589998318996432
Q 006541 382 LDLLLVQGKEYALVVDSDNVAAVADPKIFNHLIQN----QIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQS 457 (641)
Q Consensus 382 Ld~l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~----~~~~~~evv~k~~~d~kgG~l~~~~g~~~lvEy~q~~~~~~ 457 (641)
||+|+++|+||+|++|+||+++.+||.||||++++ +++|+||||+|+.+|+|||++|+++|+++++||+|+|++++
T Consensus 256 Ld~l~~~Gieyi~v~nvDNlga~vDp~~Lg~~~~~~~~~~~d~~~kVv~Kt~~dek~Gvl~~~dGk~~vvEyseip~e~~ 335 (528)
T 3r3i_A 256 LDTFIGEGKEYIFVSNIDNLGATVDLYILNHLMNPPNGKRCEFVMEVTNKTRADVKGGTLTQYEGKLRLVEIAQVPKAHV 335 (528)
T ss_dssp HHHHHHTTCCEEEEEETTBTTCCCCHHHHHHHSSCSSSCCCSEEEEECCCCTTCCSSCEEECSSSSCEEECTTSSCGGGT
T ss_pred HHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCEEEEECCEEEEEEECCCCHHHH
T ss_conf 99999659889999826875633699998998855556687578899685546786218999899079999537896675
Q ss_pred CC-----CCCEEEEECEEEEHHHHHHHHHCCCCCCCEEECCCCCC-CCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 78-----88536563010639999998630787632032010138-9895035676426731288725799814631235
Q 006541 458 GG-----KFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVN-DDQIISRGTAADSAIQFFDHTIGINVAQSRYLPV 531 (641)
Q Consensus 458 ~~-----~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~-~~~~~qlE~~i~d~i~~~~~~~~i~V~R~rF~Pv 531 (641)
++ +|++|||||+|++|++|+++++...+.||+|+|+|++| +++++|+|+||||+|++|+++.+++|||+||+||
T Consensus 336 ~~~~g~~~f~~~Ntnnlw~~L~~L~~v~~~~~l~Lp~ivn~K~vd~~~~viqlEt~igd~i~~f~~~~~i~VpR~rF~Pv 415 (528)
T 3r3i_A 336 DEFKSVSKFKIFNTNNLWISLAAVKRLQEQNAIDMEIIVNAKTLDGGLNVIQLETAVGAAIKSFENSLGINVPRSRFLPV 415 (528)
T ss_dssp TTSSCSSSCCCCEEEEEEEEHHHHHHHHHTTCCCCCCEEEEECCSSSSCEEEEEBCSTTCSTTSSSCCCEECCGGGCCBC
T ss_pred HCCCCCCCCCEEEEEEEEEEHHHHHHHHHHCCCCCCCEECCCCCCCCCCEEEEHHHHHHHHHHCCCCEEEEEEHHHCCCC
T ss_conf 23577646786799989899999999997078878705457515999878870889999987335747999736786425
Q ss_pred CCCCHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCEEEEECCEEECCCCEEEEE
Q ss_conf 68831456521000124671442789889998929829986447767642389998778632899536287148099879
Q 006541 532 NSTSDLLLLQSDLYTADEGILVQNPARDNPANPSIELGPEFEKVNNFQSRFKSIPSIINLDSLKVEGDVWFGAGITLKGK 611 (641)
Q Consensus 532 Kn~~dll~~~sd~y~~~~~~l~~~~~r~~~~~P~i~L~~~f~~~~~~~~rf~~~p~i~~~~~L~v~Gdv~fg~~v~l~G~ 611 (641)
|||+|||++|||+|.+++|.++++|.|.++..|.|+||++|+++++|++||+++|||++||+|+|+||||||+||+|+|+
T Consensus 416 Kn~sdLll~~Sdly~l~~g~l~~~~~r~~~~~P~v~L~~~~~~v~~f~~rf~~iP~l~~~~~LtV~Gdv~fg~~v~l~G~ 495 (528)
T 3r3i_A 416 KTTSDLLLVMSNLYSLNAGSLTMSEKREFPTVPLVKLGSSFTKVQDYLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGT 495 (528)
T ss_dssp CSHHHHHHHHSTTSEEETTEEECCSSCSSCCCCEEEECTTSCSHHHHHHHCSSCCEEEEEEEEEEESEEECCTTCEEEEE
T ss_pred CCHHHHHHHHCCEEEEECCEEEECCCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCEEEEECCEEECCCCEEEEE
T ss_conf 66678878742035740776885654457999878828665769999975799997212887999444597799689989
Q ss_pred EEEECCCCCEEECCCCCEEECCEEECCCCC
Q ss_conf 999918997486499986512122156789
Q 006541 612 VSIVAKRGMKLEIPDGIVLENKEIKDVADI 641 (641)
Q Consensus 612 v~i~a~~~~~~~ip~g~~l~n~~~~~~~~~ 641 (641)
|+|+|++|.+++||||++|||++|+||++|
T Consensus 496 v~i~~~~g~~~~ip~g~~len~~v~g~~~~ 525 (528)
T 3r3i_A 496 VIIIANHGDRIDIPPGAVLENKIVSGNLRI 525 (528)
T ss_dssp EEEECCTTCEEECCTTCEEEEEEEC-----
T ss_pred EEEECCCCCCEECCCCCEEECCEEECCCCC
T ss_conf 999848998023399987755387655122
No 2
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}
Probab=1.00 E-value=1 Score=890.30 Aligned_cols=394 Identities=31% Similarity=0.493 Sum_probs=373.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 51027786787400898996407689999838987878998997114538999737898899999985619987489806
Q 006541 239 LVVPYESLASISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLMN 318 (641)
Q Consensus 239 ~~~~y~~l~~~~~~~~~~~~~l~k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iMt 318 (641)
++++|++++..+ +|.++|+|+||++||||||||||+++|||++||++|+||||++++||++++++|++.|||+|||
T Consensus 57 ~~~~~~~l~~~~----~G~~~L~kvavvlLaGGlGTRLG~~~pKg~~~v~sgksflql~~eqI~~l~~~~~~~iPl~IMT 132 (484)
T 3gue_A 57 SLPFLQGIETKG----ENTALLRQAVVLKLNGGLGTGMGLNGPKSLLQVKNGQTFLDFTALQLEHFRQVRNCNVPFMLMN 132 (484)
T ss_dssp CCCBHHHHCCSS----CCHHHHTTEEEEEEECCCCGGGTCSSCGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEE
T ss_pred CCCCHHHCCCCH----HHHHHHHHCEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 067756557763----7899886367999768862335898885433659998699999999999997759981299977
Q ss_pred CCCCHHHHHHHHHHCCCCCC---EEEEEECCCCCCCCCCC------CCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCC
Q ss_conf 85324889999997399995---28998449844102679------9988761157889213789997239069998749
Q 006541 319 TAETHDRVQKVLEKYSNSKV---DIHSLSLSQQPHEKSFE------GHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQG 389 (641)
Q Consensus 319 S~~T~~~T~~~l~~~~~fg~---~i~~f~Q~~~P~l~~~~------~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G 389 (641)
|+.||++|++||++|+|||+ +|++|+|+++||++..+ +++++++|+||||| |+|.||++||+||+|+++|
T Consensus 133 S~~T~~~T~~~~~k~~~Fgl~~~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhG-diy~aL~~sGiLd~l~~~G 211 (484)
T 3gue_A 133 SFSTSGETKNFLRKYPTLYEVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHG-DVYTVLYSSGKLDYLLGKG 211 (484)
T ss_dssp CTTTHHHHHHHGGGCHHHHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGG-GHHHHHHHHSHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCEEEEECCCCCEEECCCCCCEEECCCCCH-HHHHHHHHCCCHHHHHHCC
T ss_conf 800568999999967455788434599981765669658885652389873334407965-8999988688299999769
Q ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEE----------CCEEEEEEECCCCCCCCCC
Q ss_conf 369999727645644397888887652984689970068889743189953----------9958999831899643278
Q 006541 390 KEYALVVDSDNVAAVADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLR----------PGKFQLVDITQNPTKQSGG 459 (641)
Q Consensus 390 ~eyi~v~nvDNL~~~~Dp~~lg~~~~~~~~~~~evv~k~~~d~kgG~l~~~----------~g~~~lvEy~q~~~~~~~~ 459 (641)
+||+|++|+|||++++||.|||||++++++|+||||+|+.+|+|||++|++ +|+++++||+|+|++++++
T Consensus 212 ieyi~v~~vDNL~a~~Dp~~lG~~~~~~~d~~~kvv~Kt~~dekgG~l~~~~~~~~~~~~~dG~~~vvEyseip~e~~~~ 291 (484)
T 3gue_A 212 YRYMFISNGDNLGATLDVRLLDYMHEKQLGFLMEVCRRTESDKKGGHLAYKDVIDETTGQTRRRFVLRESAQCPKEDEDS 291 (484)
T ss_dssp CCEEEEEETTCTTCCCCHHHHHHHHHTTCSEEEEEEECCTTCCSSEEEEEEC--------CCCEEEEEEGGGSCGGGHHH
T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHH
T ss_conf 88999985787542269999999986599789999888789884538999712445453789988999954599778754
Q ss_pred -----CCCEEEEECEEEEHHHHHHHHHCC--CCCCCEEECCCCCC-----CCCCHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf -----885365630106399999986307--87632032010138-----989503567642673128872579981463
Q 006541 460 -----KFKFINTRSMWVNLRAIKRLIDTD--ELKVENFSSSKEVN-----DDQIISRGTAADSAIQFFDHTIGINVAQSR 527 (641)
Q Consensus 460 -----~~~~fNtnni~~~l~~l~~~~~~~--~~~lp~~~n~K~v~-----~~~~~qlE~~i~d~i~~~~~~~~i~V~R~r 527 (641)
++++|||||||+++++|+++++.. .+.||+|+|+|+++ +++++|||+||||+|++|+++.+++|||+|
T Consensus 292 f~~~~g~~~FNtnNi~~~l~~l~~~l~~~~g~~~Lp~~vn~K~id~~k~~~~~~iqlE~~~~d~~~~~~~~~~ieV~R~r 371 (484)
T 3gue_A 292 FQNIAKHCFFNTNNIWINLMELKKMMDEQLGVLRLPVMRNPKTVNPQDSQSTKVYQLEVAMGAAISLFDRSEAVVVPRER 371 (484)
T ss_dssp HTCTTTSCEEEEEEEEEEHHHHHHHHHHTTTCCCCCCEEEEEESSTTCTTSCEEEEEECCGGGGGTTSSSEEEEECCGGG
T ss_pred HCCCCCCEEEEEEEEEEEHHHHHHHHHHCCCCCCCCCEECCCEECCCCCCCCCEEEHHHHHHHHHHHCCCCEEEEECHHH
T ss_conf 20777745767515888899999999841575788868624144687788987714687999999847861799977203
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCC-CEEECCCCCCCCCCEEEECCC-CCCHHHHHHHCCC-CCCCCCCCEEEEECCEEECC
Q ss_conf 12356883145652100012467-144278988999892982998-6447767642389-99877863289953628714
Q 006541 528 YLPVNSTSDLLLLQSDLYTADEG-ILVQNPARDNPANPSIELGPE-FEKVNNFQSRFKS-IPSIINLDSLKVEGDVWFGA 604 (641)
Q Consensus 528 F~PvKn~~dll~~~sd~y~~~~~-~l~~~~~r~~~~~P~i~L~~~-f~~~~~~~~rf~~-~p~i~~~~~L~v~Gdv~fg~ 604 (641)
|+|||||+||+++|||+|.++++ .++++|.| .+..|.|+||++ |+++++|++||++ +|||++||||+|+||||||+
T Consensus 372 F~PvKn~sdLl~~~Sdly~l~~~~~l~~~~~~-~~~~P~v~L~~~~~~~v~~f~~rf~~giPsl~~~~~L~V~Gdv~fg~ 450 (484)
T 3gue_A 372 FAPVKTCSDLLALRSDAYQVTEDQRLVLCEER-NGKPPAIDLDGEHYKMIDGFEKLVKGGVPSLRQCTSLTVRGLVEFGA 450 (484)
T ss_dssp CCCCSSHHHHHHHHSTTEEECTTSCEEECGGG-TTCCCEEEECTTTSSSHHHHHHHHTTCCCBCTTEEEEEEESSEEECT
T ss_pred CCCCCCCHHHHHHHHHCEECCCCCEEEECCCC-CCCCCEEEECCHHCCCHHHHHHHCCCCCCCHHHCCEEEEECCEEECC
T ss_conf 15456605789986430051579607746655-79999699790563769999875687899730188799966659879
Q ss_pred CCEEEEEEEEECCCCCEEECCCCCEEECCEEECC
Q ss_conf 8099879999918997486499986512122156
Q 006541 605 GITLKGKVSIVAKRGMKLEIPDGIVLENKEIKDV 638 (641)
Q Consensus 605 ~v~l~G~v~i~a~~~~~~~ip~g~~l~n~~~~~~ 638 (641)
||+|+|+|+|+|++|++++||||++|||++|+.+
T Consensus 451 ~v~l~G~v~i~~~~g~~~~ip~g~~l~~~~~~~~ 484 (484)
T 3gue_A 451 DVSVRGNVVIKNLKEEPLIIGSGRVLDNEVVVVE 484 (484)
T ss_dssp TCEEEEEEEEEECSSSCEEECTTCEEESCEEEEC
T ss_pred CCEEEEEEEEECCCCCEEECCCCCEECCEECCCC
T ss_conf 9589988999868998145289987626044799
No 3
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4 c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Probab=1.00 E-value=1 Score=775.54 Aligned_cols=409 Identities=55% Similarity=0.893 Sum_probs=387.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 46788875102778678740089899640768999983898787899899711453899973789889999998561998
Q 006541 232 IDSKDEILVVPYESLASISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCN 311 (641)
Q Consensus 232 i~~~~~~~~~~y~~l~~~~~~~~~~~~~l~k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~ 311 (641)
+.+.+++.+.+|++++..+.+.+.|.++++|+++|+||||||||||+++||+++||.+|+||||++++|+++++.+||+.
T Consensus 49 i~p~~~~~~~~~~~~~~~~~~~~~g~~~l~k~~vviLAGGlGTRLg~~~PK~llpv~~gkp~Le~~i~~l~~~~~~~G~~ 128 (469)
T 2icy_A 49 IQTPTDEIVVPYEKMTPVSQDVAETKNLLDKLVVLKLNGGLGTTMGCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCK 128 (469)
T ss_dssp CBCCCTTTEEEGGGSCCCCSCHHHHHHHHTTEEEEEEECCBSGGGTCCSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 42698024557433354503578888753153599983786563887887423516799879999999999978861997
Q ss_pred CCEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC-------CCCCCCCCCCCCCHHHHHHHHHHCCHHHH
Q ss_conf 74898068532488999999739999528998449844102679-------99887611578892137899972390699
Q 006541 312 VPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQQPHEKSFE-------GHSRKDKLYPSSDHSVVFLSLMKSGTLDL 384 (641)
Q Consensus 312 iPl~iMtS~~T~~~T~~~l~~~~~fg~~i~~f~Q~~~P~l~~~~-------~~~~~~~~~P~GhG~di~~aL~~sG~Ld~ 384 (641)
|||+||||+.||+.|.+||++|++||++|++|+|+++||++..+ .+++.++|+|+||| |+|.+|++||+|++
T Consensus 129 ip~vimts~~t~e~t~~~f~~~~~fG~~I~~f~Q~~~P~i~~e~~~~l~~~~~~~~~e~~P~GtG-G~~~~L~~sGll~~ 207 (469)
T 2icy_A 129 VPLVLMNSFNTHDDTHKIVEKYTNSNVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHG-DVFPALMNSGKLDT 207 (469)
T ss_dssp CCEEEEECTTTHHHHHHHHGGGTTSSSCEEEEECCCEECEETTTTEEGGGGTCCSGGGEECCCGG-GHHHHHHHHSHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHCCCHHH
T ss_conf 65899947888899999997532379639999852414472466755567788764257859846-99998786674999
Q ss_pred HHHCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCEEEEEEECCCCCCCCC-----C
Q ss_conf 98749369999727645644397888887652984689970068889743189953995899983189964327-----8
Q 006541 385 LLVQGKEYALVVDSDNVAAVADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSG-----G 459 (641)
Q Consensus 385 l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~~~~~~~evv~k~~~d~kgG~l~~~~g~~~lvEy~q~~~~~~~-----~ 459 (641)
|+++|++|++|+|+|||++++||.++|||.+++++++|+|++|+.+++++|+++.++|+++++||+|+|+++++ .
T Consensus 208 l~~~G~e~~~V~n~DnL~~~~d~~ll~~~~~~~a~~t~~v~~k~~~~~~~Gvl~~~dg~~~vvE~~e~p~~~~~e~k~~~ 287 (469)
T 2icy_A 208 FLSQGKEYVFVANSDNLGAIVDLTILKHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIE 287 (469)
T ss_dssp HHTTTCCEEEEEETTBTTCCCCHHHHHHHHHHTCSEEEEEEECCTTCCSSCEEEEETTEEEEECGGGSCGGGHHHHHSSS
T ss_pred HHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEEECCEEEEEEEECCCHHHHHHHCCCC
T ss_conf 98659978999978857751479999999873997257999961688860289998997999998516822554420344
Q ss_pred CCCEEEEECEEEEHHHHHHHHHCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHH
Q ss_conf 88536563010639999998630787632032010138989503567642673128872579981463123568831456
Q 006541 460 KFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVNDDQIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTSDLLL 539 (641)
Q Consensus 460 ~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~~~~~~qlE~~i~d~i~~~~~~~~i~V~R~rF~PvKn~~dll~ 539 (641)
.|.+|||||+|+++++|+++.+.....||+|+|+|++|+.+++|||+||||++++|+++.+++|+|+||+||||++|+++
T Consensus 288 ~~~~~N~g~y~~~~~~L~~i~~~~~~~lp~~v~~K~id~~~~~klE~~~~D~~~~~~~~~~~~V~R~~F~PvKn~~dll~ 367 (469)
T 2icy_A 288 KFKIFNTNNLWVNLKAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGVNVPRSRFLPVKASSDLLL 367 (469)
T ss_dssp SCCEEEEEEEEEEHHHHHHHHHTTCCCCCCBCCEEEETTEEEECCBCCGGGGGGGSTTCEEEECCGGGCCBCCSHHHHHH
T ss_pred CCCEEEEEEEEECHHHHHHHHHCCCCCCHHHCCCEECCCCCEEEEHHHHHHHHHHCCCEEEEEECHHHCCCCCCHHHHHH
T ss_conf 46654689999819999998753667862110542138986675447667899736870899946567076898788999
Q ss_pred HHHHHCCCCCCCEEECCCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCEEEEECCEEECCCCEEEEEEEEECCCC
Q ss_conf 52100012467144278988999892982998644776764238999877863289953628714809987999991899
Q 006541 540 LQSDLYTADEGILVQNPARDNPANPSIELGPEFEKVNNFQSRFKSIPSIINLDSLKVEGDVWFGAGITLKGKVSIVAKRG 619 (641)
Q Consensus 540 ~~sd~y~~~~~~l~~~~~r~~~~~P~i~L~~~f~~~~~~~~rf~~~p~i~~~~~L~v~Gdv~fg~~v~l~G~v~i~a~~~ 619 (641)
++||+|.+++|.+++++.|..+..|.|+|+++|+++++|++||+++|||++||||+|+||||||+||+|+|+|+|+|++|
T Consensus 368 ~~s~l~~~~~g~~~~~~~~~~~~~P~v~l~~~~~~v~~f~~rf~~~p~~~~~~~l~v~gdv~fg~~v~l~G~v~i~~~~~ 447 (469)
T 2icy_A 368 VQSDLYTLVDGFVTRNKARTNPSNPSIELGPEFKKVATFLSRFKSIPSIVELDSLKVSGDVWFGSSIVLKGKVTVAAKSG 447 (469)
T ss_dssp HHSTTEEEETTEEEECTTCCSSSCCEEEECGGGCSHHHHHHTBSSCCBCTTEEEEEEESEEEECSSCEEEEEEEEECCTT
T ss_pred HHHHHHHHHCCCEEECCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEECCCC
T ss_conf 99989998569687367655799973771753652999987469986601277489973059769858988999986899
Q ss_pred CEEECCCCCEEECCEEECCCCC
Q ss_conf 7486499986512122156789
Q 006541 620 MKLEIPDGIVLENKEIKDVADI 641 (641)
Q Consensus 620 ~~~~ip~g~~l~n~~~~~~~~~ 641 (641)
.+++||||++|||++|+||+||
T Consensus 448 ~~~~ip~g~~l~~~~~~~~~~~ 469 (469)
T 2icy_A 448 VKLEIPDRAVVENKNINGPEDL 469 (469)
T ss_dssp CEEEECTTCEEESCEECCC---
T ss_pred CEEECCCCCEEECCEEECCCCC
T ss_conf 8243299977605352056779
No 4
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*
Probab=1.00 E-value=1 Score=756.14 Aligned_cols=393 Identities=27% Similarity=0.425 Sum_probs=369.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 75102778678740089899640768999983898787899899711453899973789889999998561998748980
Q 006541 238 ILVVPYESLASISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCNVPLLLM 317 (641)
Q Consensus 238 ~~~~~y~~l~~~~~~~~~~~~~l~k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~iPl~iM 317 (641)
+.+.+|++++. +.|.++|+|+|||+||||||||||+++||+++||++|+||||++++|+++++.+||+.|||+||
T Consensus 56 ~~~~~~~~~~~-----~~g~~~l~k~avViLAGGlGTRLg~~~PK~llpV~~gk~fLe~~ie~l~~~~~~~g~~ip~viM 130 (505)
T 2oeg_A 56 DSLDALDSLTI-----ECDNAVLQSTVVLKLNGGLGTGMGLCDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHLRFMLM 130 (505)
T ss_dssp CCCCBGGGCCC-----CCCHHHHHTEEEEEEECCCCGGGTCCSCGGGSEEETTEEHHHHHHHHHHHHHHHTCTTCEEEEE
T ss_pred HHCCCHHHCCH-----HHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 66268655155-----6789887436599972786242689988746656999939999999999978860898678999
Q ss_pred CCCCCHHHHHHHHH-HCCCCCC---EEEEEECCCCCCCCCCC------CCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHH
Q ss_conf 68532488999999-7399995---28998449844102679------99887611578892137899972390699987
Q 006541 318 NTAETHDRVQKVLE-KYSNSKV---DIHSLSLSQQPHEKSFE------GHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLV 387 (641)
Q Consensus 318 tS~~T~~~T~~~l~-~~~~fg~---~i~~f~Q~~~P~l~~~~------~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~ 387 (641)
||+.||+.|.+||+ ++++||+ +|++|+|+++||++..+ +.++.++|+|+||| |+|.+|++||+|++|++
T Consensus 131 tS~~t~e~t~~~f~~~~~~fGl~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~G-g~~~aL~~sGlL~~l~~ 209 (505)
T 2oeg_A 131 DSFNTSASTKSFLKARYPWLYQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHG-DIYTALYGSGKLQELVE 209 (505)
T ss_dssp ECHHHHHHHHHHHHHHCHHHHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTT-HHHHHHHHTTHHHHHHH
T ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEECCCCCEEECCCCCCCCCCCCCCH-HHHHHHHHCCHHHHHHH
T ss_conf 57887899999985342122988342599997678857158873554488976035869955-99998776673999986
Q ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEE-------ECCE-------EEEEEECCCC
Q ss_conf 4936999972764564439788888765298468997006888974318995-------3995-------8999831899
Q 006541 388 QGKEYALVVDSDNVAAVADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINL-------RPGK-------FQLVDITQNP 453 (641)
Q Consensus 388 ~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~~~~~~~evv~k~~~d~kgG~l~~-------~~g~-------~~lvEy~q~~ 453 (641)
+|++|+||+|+|||++++||.++||+++++++++++|++|+.+|++||+++. ++|+ ++++||+|+|
T Consensus 210 ~G~e~i~V~N~DNL~~~~D~~llg~~~~~~ad~~~~v~~k~~~d~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse~p 289 (505)
T 2oeg_A 210 QGYRYMFVSNGDNLGATIDKRVLAYMEKEKIDFLMEVCRRTESDKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCP 289 (505)
T ss_dssp TTCCEEEEECTTCTTCCCCHHHHHHHHHHTCSEEEEEEECCTTCCSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGGSC
T ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf 49978999977715531389999999866995899999942786612699971244436688323335742699963588
Q ss_pred CCCCCC-----CCCEEEEECEEEEHHHHHHHHHC--CCCCCCEEECCCCCC-----CCCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 643278-----88536563010639999998630--787632032010138-----989503567642673128872579
Q 006541 454 TKQSGG-----KFKFINTRSMWVNLRAIKRLIDT--DELKVENFSSSKEVN-----DDQIISRGTAADSAIQFFDHTIGI 521 (641)
Q Consensus 454 ~~~~~~-----~~~~fNtnni~~~l~~l~~~~~~--~~~~lp~~~n~K~v~-----~~~~~qlE~~i~d~i~~~~~~~~i 521 (641)
++++++ +|++|||||+|++|++|+++++. ..+.||+|+|+|++| .++++||||||||+|++|+++.++
T Consensus 290 ~e~~~~~~g~~~f~~~Ninn~~~~l~~l~~~~~~~~~~~~Lp~~vn~K~i~~~d~~~~~~~qlE~~~~d~~~~~~~~~~~ 369 (505)
T 2oeg_A 290 KADMESFQDINKYSFFNTNNLWIRLPVLLETMQEHGGTLPLPVIRNEKTVDSSNSASPKVYQLETAMGAAIAMFESASAI 369 (505)
T ss_dssp GGGHHHHHCTTTTCEEEEEEEEEEHHHHHHHHHHTTSSCCCCCEEEEEESSSSCTTSCEEEEEECCGGGGGGSCTTCEEE
T ss_pred HHHHHCCCCCCCCCEEEEEEEEEEHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCEEEEEEHHHHHHHHCCCCEEE
T ss_conf 56654126710167337878998899999998610575677532446655887788887688717777799746743499
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHCCCCC-CCEEECCCCCCCCCCEEEECCC-CCCHHHHHHHCCC-CCCCCCCCEEEEEC
Q ss_conf 9814631235688314565210001246-7144278988999892982998-6447767642389-99877863289953
Q 006541 522 NVAQSRYLPVNSTSDLLLLQSDLYTADE-GILVQNPARDNPANPSIELGPE-FEKVNNFQSRFKS-IPSIINLDSLKVEG 598 (641)
Q Consensus 522 ~V~R~rF~PvKn~~dll~~~sd~y~~~~-~~l~~~~~r~~~~~P~i~L~~~-f~~~~~~~~rf~~-~p~i~~~~~L~v~G 598 (641)
+|+|+||+||||++|++++|||+|.+++ +.+..++.|. ..+|.|+|+|. |+++++|++||++ +|||+++|+|+|+|
T Consensus 370 ~V~R~~FsPvKn~~dl~~~~sdly~~~~~~~~~~~~~~~-~~~p~i~l~p~~~~~~~~~~~r~~~g~psi~~~~~L~v~G 448 (505)
T 2oeg_A 370 VVPRSRFAPVKTCADLLALRSDAYVVTDDFRLVLDDRCH-GHPPVVDLDSAHYKMMNGFEKLVQHGVPSLVECKRVTVKG 448 (505)
T ss_dssp ECCGGGCCCCSSHHHHHHHHSTTEEECTTCCEEECGGGT-TCCCEEEECHHHHSSHHHHHHHSTTCCCBCTTEEEEEEES
T ss_pred EECCCEEECCCCCCCHHHHHHHHHHHCCCCEEEECCCCC-CCCCEEEECHHHCCCHHHHHHHCCCCCCCCCCCCEEEEEC
T ss_conf 966212304568789999999998626786399714304-7698599894573869999975589997556676799973
Q ss_pred CEEECCCCEEEEEEEEECC-CCCEEECCCCCEEECCEEEC
Q ss_conf 6287148099879999918-99748649998651212215
Q 006541 599 DVWFGAGITLKGKVSIVAK-RGMKLEIPDGIVLENKEIKD 637 (641)
Q Consensus 599 dv~fg~~v~l~G~v~i~a~-~~~~~~ip~g~~l~n~~~~~ 637 (641)
||+||+||+|+|+|+|+|. +|++++||+|++|+|++++.
T Consensus 449 ~~~f~~~v~l~G~v~i~a~~~~~~~~ip~g~~l~n~~~~~ 488 (505)
T 2oeg_A 449 LVQFGAGNVLTGTVTIENTDSASAFVIPDGAKLNDTTASP 488 (505)
T ss_dssp SEECCTTCEEEEEEEEECCSCSSCEECCTTCEEESCEECC
T ss_pred CEEECCCCEEEEEEEEEECCCCCCEEECCCCEEECCEECH
T ss_conf 4088368389878999954899837948998885763042
No 5
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=741.87 Aligned_cols=404 Identities=39% Similarity=0.645 Sum_probs=379.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 46788875102778678740089899640768999983898787899899711453899973789889999998561998
Q 006541 232 IDSKDEILVVPYESLASISEDIAETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVKNNLTPLDLMVDQVESLNSKYGCN 311 (641)
Q Consensus 232 i~~~~~~~~~~y~~l~~~~~~~~~~~~~l~k~avv~LaGGlGTrlG~~~pK~~l~v~~~~tfldl~~~qi~~l~~~~g~~ 311 (641)
+.+.+++.+.+|+++...+ .+..+++|++||+||||+|||||+++||+++||.+|+||||++++++++++.++|+.
T Consensus 66 i~p~~~~~~~~~~~~~~~~----~~~~~~~k~avViLAGG~GTRmgs~~PK~l~~V~~gk~~Le~~i~~i~~l~~~~G~~ 141 (488)
T 2i5k_A 66 IKSPNPDEVVKYEIISQQP----ENVSNLSKLAVLKLNGGLGTSMGCVGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSD 141 (488)
T ss_dssp EECCCTTTEEEHHHHHSSC----CCSTTGGGEEEEEECCCBSGGGTCCSBSTTSCCBTTBCHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHCCCCHHHCCCCH----HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 4248732065733336451----246534772599983897665788988312044799969999999999867860998
Q ss_pred CCEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC-------CCCCCCCCCCCCCHHHHHHHHHHCCHHHH
Q ss_conf 74898068532488999999739999528998449844102679-------99887611578892137899972390699
Q 006541 312 VPLLLMNTAETHDRVQKVLEKYSNSKVDIHSLSLSQQPHEKSFE-------GHSRKDKLYPSSDHSVVFLSLMKSGTLDL 384 (641)
Q Consensus 312 iPl~iMtS~~T~~~T~~~l~~~~~fg~~i~~f~Q~~~P~l~~~~-------~~~~~~~~~P~GhG~di~~aL~~sG~Ld~ 384 (641)
|||+||||+.||++|+++|+++++||++|.+|.|+++||++..+ .+++.++|+|+||| |+|.+|+.||+|+.
T Consensus 142 Ip~vImts~~t~e~t~~~~~~~~~fg~~i~~f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtG-ga~~~L~~sg~l~~ 220 (488)
T 2i5k_A 142 VPLLLMNSFNTDKDTEHLIKKYSANRIRIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHG-DLFESLHVSGELDA 220 (488)
T ss_dssp CEEEEECCTTTHHHHHHHHGGGCSSSCEEEEECCCCEECEETTTCCBSCSSSSSCTTSEECCCGG-GHHHHHHHHTHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEECCCCEECCCCCEEECCCCCCCCEEEECCCCC-HHHHHHHHCCCHHH
T ss_conf 64899978987799999998504568569999807610283045343035788775545069972-66552554070889
Q ss_pred HHHCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCEEEEEEECCCCCCCCC---C--
Q ss_conf 98749369999727645644397888887652984689970068889743189953995899983189964327---8--
Q 006541 385 LLVQGKEYALVVDSDNVAAVADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSG---G-- 459 (641)
Q Consensus 385 l~~~G~eyi~v~nvDNL~~~~Dp~~lg~~~~~~~~~~~evv~k~~~d~kgG~l~~~~g~~~lvEy~q~~~~~~~---~-- 459 (641)
|.++|++|++|+|+|||++.+||.+||++..++++++++|++++.+++++|++++.+|+++++||+|+++++.+ +
T Consensus 221 l~~~g~~~v~V~ngDnL~~~~d~~~L~~~~~~~a~~t~~v~~~~~p~~~yG~Iv~~dG~~~iVE~~e~~~e~~~~~~~~~ 300 (488)
T 2i5k_A 221 LIAQGREILFVSNGDNLGATVDLKILNHMIETGAEYIMELTDKTRADVKGGTLISYDGQVRLLEVAQVPKEHIDEFKNIR 300 (488)
T ss_dssp HHHTTCCEEEEECTTBSSCCCCHHHHHHHHHSCCSEEEEEEECCGGGSSSCEEEEETTEEEEECGGGSCTTSHHHHTCTT
T ss_pred HHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEEECCCEEEEEECCCCHHHHHHCCCCC
T ss_conf 97469977999968847771469999999856993999999936998866599997894889984249999984013565
Q ss_pred CCCEEEEECEEEEHHHHHHHHHCCCCCCCEEECCCCCC----CCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 88536563010639999998630787632032010138----98950356764267312887257998146312356883
Q 006541 460 KFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVN----DDQIISRGTAADSAIQFFDHTIGINVAQSRYLPVNSTS 535 (641)
Q Consensus 460 ~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~----~~~~~qlE~~i~d~i~~~~~~~~i~V~R~rF~PvKn~~ 535 (641)
.+++||||++|+++++|+++++.....||+|+|+|+++ +++++|||+||||+|++|+++.+++|||+||+||||++
T Consensus 301 ~~~~~Ntgi~~f~~~~L~~~l~~~~~~lp~~v~~K~i~~~~~~~~~~qlE~~~~d~~~~~~~~~~~~V~R~~F~PvKn~~ 380 (488)
T 2i5k_A 301 KFTNFNTNNLWINLKAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQLETACGAAIRHFDGAHGVVVPRSRFLPVKTCS 380 (488)
T ss_dssp TCCEEEEEEEEEEHHHHHHHHHTTCCCCCCBCCEECCCC-----CEECCBCCGGGGGGGSSSCEEEEECGGGCCBCCSHH
T ss_pred CCCEEEEEEEEEEHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCEEEEEEHHHHHHHHCCCCEEEEECCCCCCCCCCCC
T ss_conf 66778899999839999999862568875302475226788987168763323447763467359996566410366876
Q ss_pred HHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCEEEEECCEEECCCCEEEEEEEEE
Q ss_conf 14565210001246714427898899989298299864477676423899987786328995362871480998799999
Q 006541 536 DLLLLQSDLYTADEGILVQNPARDNPANPSIELGPEFEKVNNFQSRFKSIPSIINLDSLKVEGDVWFGAGITLKGKVSIV 615 (641)
Q Consensus 536 dll~~~sd~y~~~~~~l~~~~~r~~~~~P~i~L~~~f~~~~~~~~rf~~~p~i~~~~~L~v~Gdv~fg~~v~l~G~v~i~ 615 (641)
|++++|||+|.+++|.+++++.+ .+..|.|+|+++|+++++|++||+++|+|+++++|+|+|||+||+||+|+|+|+|+
T Consensus 381 ~ll~~~~~~~~~~~g~~~~~~~~-~e~~P~v~~~~~~~~~~~~~~rf~~~p~i~~~~~l~v~Gdv~fg~~v~l~G~v~i~ 459 (488)
T 2i5k_A 381 DLLLVKSDLFRLEHGSLKLDPSR-FGPNPLIKLGSHFKKVSGFNARIPHIPKIVELDHLTITGNVFLGKDVTLRGTVIIV 459 (488)
T ss_dssp HHHHHTSTTEEEETTEEEECTTC-CSSCCEEEECGGGSSHHHHHHHCSSCCBCTTEEEEEEESSEEECTTCEEEEEEEEE
T ss_pred CHHHHHHHHHHHHCCCEEECCCC-CCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEE
T ss_conf 57899999999846967646775-77788699778620253577655898652325558998126985785898789998
Q ss_pred CCCCCEEECCCCCEEECCEEECCCCC
Q ss_conf 18997486499986512122156789
Q 006541 616 AKRGMKLEIPDGIVLENKEIKDVADI 641 (641)
Q Consensus 616 a~~~~~~~ip~g~~l~n~~~~~~~~~ 641 (641)
|++|++++||||++|+|++|+||+||
T Consensus 460 a~~~~~~~ip~g~~l~n~~~~~~~~~ 485 (488)
T 2i5k_A 460 CSDGHKIDIPNGSILENVVVTGNLQI 485 (488)
T ss_dssp CCTTCCEEECTTCEEEEEEEEEEEEE
T ss_pred CCCCCEEEECCCCEEECCEEECCCCC
T ss_conf 58998477089988856534544121
No 6
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Probab=1.00 E-value=1 Score=674.26 Aligned_cols=370 Identities=18% Similarity=0.206 Sum_probs=325.1
Q ss_pred HHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEECC--CCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 98996407689999838987878998997114538--9997378988999999856199874898068532488999999
Q 006541 254 AETKMLLDKLVVVKFNGALGTNMGFSGPKSAIEVK--NNLTPLDLMVDQVESLNSKYGCNVPLLLMNTAETHDRVQKVLE 331 (641)
Q Consensus 254 ~~~~~~l~k~avv~LaGGlGTrlG~~~pK~~l~v~--~~~tfldl~~~qi~~l~~~~g~~iPl~iMtS~~T~~~T~~~l~ 331 (641)
+.|.++++|+|||+||||||||||+++||+++||+ +++||||++++||+ +++|+.|||+||||+.||++|++||+
T Consensus 106 ~~Gl~~i~kvavvllaGGlGTRLG~~~pK~~lpv~~~s~ks~lql~~e~i~---~~~g~~iPl~IMTS~~T~~~T~~~~~ 182 (630)
T 3ogz_A 106 NAGTAMLCKTVFVLVAGGLGERLGYSSIKVSLPVETATNTTYLAYYLRWAQ---RVGGKEVPFVIMTSDDTHDRTLQLLR 182 (630)
T ss_dssp HHHHHHGGGEEEEEECCCEEGGGTEEEEGGGSBSCTTTCCBHHHHHHHHHH---HHHCTTCCEEEEECTTTHHHHHHHHH
T ss_pred HHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHH---HHHCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 986997730269996488642147877743420047899849999999999---98699986899956451699999999
Q ss_pred HCCCCCC---EEEEEECCCCCCCCCCC-----CCCCCCCCCCCCCHHHHHHHHHHCC------------------HHHHH
Q ss_conf 7399995---28998449844102679-----9988761157889213789997239------------------06999
Q 006541 332 KYSNSKV---DIHSLSLSQQPHEKSFE-----GHSRKDKLYPSSDHSVVFLSLMKSG------------------TLDLL 385 (641)
Q Consensus 332 ~~~~fg~---~i~~f~Q~~~P~l~~~~-----~~~~~~~~~P~GhG~di~~aL~~sG------------------~Ld~l 385 (641)
+ ||+ +|++|+|+++||++..+ +.+++++|+|+||| |+|.+|++|| +|++|
T Consensus 183 ~---fgl~~~~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhG-dv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l 258 (630)
T 3ogz_A 183 E---LQLEVPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHG-DVHSLIYNATVKRDVVPDSGDGTATAQPLVNDW 258 (630)
T ss_dssp H---TTCCCTTEEEEECCCEECBSSTTCCBCBCTTSSBCEECCCTT-HHHHHHHHCBC--------------CCBHHHHH
T ss_pred H---HCCCCCCEEEEECCCEEEEECCCCCEEECCCCCCCCCCCCCH-HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 8---499833379998177877855888660068995057889987-999999971997545544333331077899999
Q ss_pred HHCCCEEEEEECCCC-CCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEE---CCEE---EEEEECCCCCCCCC
Q ss_conf 874936999972764-5644397888887652984689970068889743189953---9958---99983189964327
Q 006541 386 LVQGKEYALVVDSDN-VAAVADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLR---PGKF---QLVDITQNPTKQSG 458 (641)
Q Consensus 386 ~~~G~eyi~v~nvDN-L~~~~Dp~~lg~~~~~~~~~~~evv~k~~~d~kgG~l~~~---~g~~---~lvEy~q~~~~~~~ 458 (641)
+++|+||+||+|+|| |++++||.||||+++++++|++|||+|++.|. +|++|+. +|++ ++|||+|++++.++
T Consensus 259 ~~~Gieyi~v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~p~E~-vG~l~~~~~~dGk~~~v~vVEYsei~~~~~~ 337 (630)
T 3ogz_A 259 LAAGYESIVFIQDTNAGATITIPISLALSAEHSLDMNFTCIPRVPKEP-IGLLCRTKKNSGDPWLVANVEYNVFAEVSRA 337 (630)
T ss_dssp HHTTCCEEEEECTTBTTHHHHHHHHHHHHHHTTCSEEEEEECCCSSCS-SCEEEEEESSTTSCCEEEEECHHHHHHHHHH
T ss_pred HHCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCC-EEEEEEEECCCCCEEEEEEEEECCCCHHHHH
T ss_conf 975988999990687632223999857998669977999988887765-3269999648993611568984007976750
Q ss_pred ----------C--CCCEE--EEECEEEEHHHHHHHHHCCCCCCCEEECCCCCCC-----CCCHHHHHHHHHHHHCCC-CC
Q ss_conf ----------8--88536--5630106399999986307876320320101389-----895035676426731288-72
Q 006541 459 ----------G--KFKFI--NTRSMWVNLRAIKRLIDTDELKVENFSSSKEVND-----DQIISRGTAADSAIQFFD-HT 518 (641)
Q Consensus 459 ----------~--~~~~f--Ntnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~~-----~~~~qlE~~i~d~i~~~~-~~ 518 (641)
+ +|++| ||||+|++|+++++.++.....+|+|+|+|++|+ ++++||||||||++++|+ ++
T Consensus 338 ~~~~~g~~~~~~~~~~~f~GNtNnl~~~L~a~~~~l~~~~~~ip~~vNpK~~d~~~~~~~~~~qLEt~m~d~~~~F~~~~ 417 (630)
T 3ogz_A 338 LNKDGGDEVSDPTGFSPFPGSVNTLVFKLSSYVDRLRESHGIVPEFINPKYSDETRRSFKKPARIESLMQDIALLFSEDD 417 (630)
T ss_dssp C------------CCCSSCEEEEEEEEEHHHHHHHHHHHTTCCCCEECCCBSSSSSCCBSSCBCEECCGGGGGGGCCTTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 44877654445555555655213356779999999986048663341776317766645761235668778987535567
Q ss_pred ---EEEEEECCCCCCCCCCCH--------------HHHHHHHHCCCCCCCEEE----------------CCCCCCCCCCE
Q ss_conf ---579981463123568831--------------456521000124671442----------------78988999892
Q 006541 519 ---IGINVAQSRYLPVNSTSD--------------LLLLQSDLYTADEGILVQ----------------NPARDNPANPS 565 (641)
Q Consensus 519 ---~~i~V~R~rF~PvKn~~d--------------ll~~~sd~y~~~~~~l~~----------------~~~r~~~~~P~ 565 (641)
.+++|||+||+||||+++ ....++|+|.++..+|.. +..+....+|.
T Consensus 418 ~~v~~~~V~R~~F~PVKn~~~~a~~k~~~g~~~~sp~t~~~dly~~~~~~L~~aG~~v~~~~~~~~~~~~~~~~~~~~P~ 497 (630)
T 3ogz_A 418 YRVGGTVFERFSYQPVKNSLEEAAGLVAQGNGAYCAATGEAAFYELQRRRLKAIGLPLFYSSQPEVTVAKDAFGVRLFPI 497 (630)
T ss_dssp CCEEEEECCGGGCCBCCBCHHHHHHHHHTTCCCCBHHHHHHHHHHHHHHHHHHTTCCCCCCCSCSEEETTTTEEECCCSE
T ss_pred CCEEEEEECCCEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHCCCCCCCCCCE
T ss_conf 61568997777455565775676664116997678689999999999999998695202556620333248543477987
Q ss_pred EEECCCCCC---HHHHHHHCCC--CCCCCCCCEEEEECCEEECCCCEEEEEEEEECCCCCE----EECCCCCEEECCE
Q ss_conf 982998644---7767642389--9987786328995362871480998799999189974----8649998651212
Q 006541 566 IELGPEFEK---VNNFQSRFKS--IPSIINLDSLKVEGDVWFGAGITLKGKVSIVAKRGMK----LEIPDGIVLENKE 634 (641)
Q Consensus 566 i~L~~~f~~---~~~~~~rf~~--~p~i~~~~~L~v~Gdv~fg~~v~l~G~v~i~a~~~~~----~~ip~g~~l~n~~ 634 (641)
|.|+|.|+. .+++++||++ .++|+++++|.|+|+ ++.++|.|+|+|+|.|++|++ +++ ++ +++|+.
T Consensus 498 i~l~p~~~~~~~~~~~~~k~~~~~~~~i~~~S~L~veg~-v~~~~l~LdG~lvI~a~~~~~~~~~v~~-~~-~v~n~g 572 (630)
T 3ogz_A 498 IVLDTVCASSGSLDDLARVFPTPEKVHIDQHSTLIVEGR-VIIESLELYGALTIRGPTDSMALPHVVR-NA-VVRNAG 572 (630)
T ss_dssp EEECHHHHTTCCHHHHHHHCSSGGGEEECTTCEEEEESS-EEESCEEEESEEEEECCSSTTSCCEEEC-SE-EEECCC
T ss_pred EEEECCCCCCCCHHHHHHHHCCCCCCEECCCCEEEEEEE-EEEEEEEEEEEEEEECCCCCCCCCEEEE-CC-EEECCC
T ss_conf 998151155545999999717888854648867999988-9997789966799974789755755886-13-485699
No 7
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=1.00 E-value=1 Score=588.44 Aligned_cols=315 Identities=15% Similarity=0.232 Sum_probs=279.9
Q ss_pred HHHHHHHC--CCEEEEEECCCCCCCCCCCCCCEEEECC--CCCCHHHHHHHHHHHHHH---HH----CCCCCEEEECCCC
Q ss_conf 89899640--7689999838987878998997114538--999737898899999985---61----9987489806853
Q 006541 253 IAETKMLL--DKLVVVKFNGALGTNMGFSGPKSAIEVK--NNLTPLDLMVDQVESLNS---KY----GCNVPLLLMNTAE 321 (641)
Q Consensus 253 ~~~~~~~l--~k~avv~LaGGlGTrlG~~~pK~~l~v~--~~~tfldl~~~qi~~l~~---~~----g~~iPl~iMtS~~ 321 (641)
.+.|.+++ +|+|||+||||||||||+++||+++||+ +|+||||++++||+++++ ++ ++.|||+||||+.
T Consensus 24 ~~~Gl~~i~~gkvavvlLAGG~GTRLG~~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~ 103 (405)
T 3oc9_A 24 YYRGLELISQGKTALITPAGGQGSRLGFEHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEE 103 (405)
T ss_dssp HHHHHHHHHTTCEEEEEECCSBCTTTTCCSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTT
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
T ss_conf 99889987239658999668875546688887440316889984999999999999998765224668997789996886
Q ss_pred CHHHHHHHHHHCCCCCC---EEEEEECCCCCCCCCCC-----CCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCEEE
Q ss_conf 24889999997399995---28998449844102679-----99887611578892137899972390699987493699
Q 006541 322 THDRVQKVLEKYSNSKV---DIHSLSLSQQPHEKSFE-----GHSRKDKLYPSSDHSVVFLSLMKSGTLDLLLVQGKEYA 393 (641)
Q Consensus 322 T~~~T~~~l~~~~~fg~---~i~~f~Q~~~P~l~~~~-----~~~~~~~~~P~GhG~di~~aL~~sG~Ld~l~~~G~eyi 393 (641)
||++|++||++|++||+ +|++|+|+++||++ .+ ++++.++|+|+||| |+|.+|++||+||+|+++|+||+
T Consensus 104 t~e~t~~~f~~~~~fGl~~~~i~~f~Q~~~P~i~-~dg~i~l~~~~~i~~~P~GhG-gi~~aL~~sG~Ld~l~~~Gieyi 181 (405)
T 3oc9_A 104 TIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVVD-FNGKILYEKKDKPYMAPNGHG-GLFKALKDNGILEFMNEKGIKYS 181 (405)
T ss_dssp THHHHHHHHHHTGGGGSCTTSEEEEECCEEECBC-TTSCBCEEETTEECEEECCGG-GHHHHHHHTTHHHHHHHHTCCEE
T ss_pred CHHHHHHHHHHCCCCCCCCCCEEEEEECCEEEEE-CCCCEECCCCCCCCCCCCCCH-HHHHHHHHCCCHHHHHHCCCEEE
T ss_conf 0799999997574358885426999607645792-688750279986022669973-99999887782999996598799
Q ss_pred EEECCCC-CCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCEEEEEEECCCCCCCCCC----CCCEEEEEC
Q ss_conf 9972764-56443978888876529846899700688897431899539958999831899643278----885365630
Q 006541 394 LVVDSDN-VAAVADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQNPTKQSGG----KFKFINTRS 468 (641)
Q Consensus 394 ~v~nvDN-L~~~~Dp~~lg~~~~~~~~~~~evv~k~~~d~kgG~l~~~~g~~~lvEy~q~~~~~~~~----~~~~fNtnn 468 (641)
||+|+|| |++++||.|+|||++++++++||||+|+.+|+++|++|+++|+++++||+|+|++ .+. ++.+||+||
T Consensus 182 ~v~nvDN~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~~dek~Gvl~~~dg~~~vvEysei~~e-~e~~~~~g~l~fn~~N 260 (405)
T 3oc9_A 182 VAHNVDNILCKDVDPNMIGYMDLLQSEICIKIVKKGFKEEKVGVLVKEQERIKVVEYTELTDE-LNKQLSNGEFIYNCGH 260 (405)
T ss_dssp EEECTTBTTCCSSCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEETTEEEEECGGGCCTT-TTCBCTTSCBSSCEEE
T ss_pred EEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEECCEEEEEEEEECCHH-HHHCCCCCCEEECCCE
T ss_conf 999689753023799999999975998799999878998752449998991689997507877-8612877756604144
Q ss_pred EEE---EHHHHHHHHHCCCCCCCEEECCCCCC------------CCCCHHHHHHHHHHHHCCCCCEEEEEECC-CCCCCC
Q ss_conf 106---39999998630787632032010138------------98950356764267312887257998146-312356
Q 006541 469 MWV---NLRAIKRLIDTDELKVENFSSSKEVN------------DDQIISRGTAADSAIQFFDHTIGINVAQS-RYLPVN 532 (641)
Q Consensus 469 i~~---~l~~l~~~~~~~~~~lp~~~n~K~v~------------~~~~~qlE~~i~d~i~~~~~~~~i~V~R~-rF~PvK 532 (641)
||+ +++||++++ ...||+|+|.|+++ .+|++|||+||||+|++|+++.+++|+|+ ||+|||
T Consensus 261 i~~h~fs~~fL~~i~---~~~l~~h~a~Kkip~~d~~g~~~~p~~~ngiklE~fifd~f~~~~~~~~~eV~R~~eF~PlK 337 (405)
T 3oc9_A 261 ISINGYSTSFLEKAA---EYQLPYHIAKKKVPFVNEQGIVIHPSENNGIKKEIFFFDVFPLATKVSIFEIQRFIEFSALK 337 (405)
T ss_dssp EEEEEEEHHHHHHHT---TCCCCCEEEEECCCEECTTSCEECCSSCCEEEEECCGGGGGGGCSCEEEEECCHHHHCCBCC
T ss_pred EEEEECCHHHHHHHH---HCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCEEEEEECHHHCCCCEE
T ss_conf 674554899999861---50687278525668607888880468864234387998888755652899978476235503
Q ss_pred CC-----CHHHHHHHHHCCCCCCCEEECCCCCCCC-CCEEEECCCCC
Q ss_conf 88-----3145652100012467144278988999-89298299864
Q 006541 533 ST-----SDLLLLQSDLYTADEGILVQNPARDNPA-NPSIELGPEFE 573 (641)
Q Consensus 533 n~-----~dll~~~sd~y~~~~~~l~~~~~r~~~~-~P~i~L~~~f~ 573 (641)
|+ ++...+|+|++.++..++..+.....+. ...|+.+|-..
T Consensus 338 n~~g~~~dsp~tar~~l~~~~~~wl~~ag~~~~~~~~~~~Eispl~s 384 (405)
T 3oc9_A 338 NSLNESFDNVNTVKRDWYRLNIYYLKKAGAIVDDSKSPICEISFRKS 384 (405)
T ss_dssp CCTTSSSSSHHHHHHHHHHHHHHHHHHTTCEEECSSCCCEEECTTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEECCCCC
T ss_conf 58998999999999999998899999879887478886189676320
No 8
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
Probab=1.00 E-value=1 Score=559.48 Aligned_cols=334 Identities=13% Similarity=0.145 Sum_probs=288.3
Q ss_pred CCCCCCCCCCCCCCCC--CCHHHHHHHC--CCEEEEEECCCCCCCCCCCCCCEEEECC--CCCCHHHHHHHHHHHHHHHH
Q ss_conf 8887510277867874--0089899640--7689999838987878998997114538--99973789889999998561
Q 006541 235 KDEILVVPYESLASIS--EDIAETKMLL--DKLVVVKFNGALGTNMGFSGPKSAIEVK--NNLTPLDLMVDQVESLNSKY 308 (641)
Q Consensus 235 ~~~~~~~~y~~l~~~~--~~~~~~~~~l--~k~avv~LaGGlGTrlG~~~pK~~l~v~--~~~tfldl~~~qi~~l~~~~ 308 (641)
.+++.+..|.+++... .-.+.|.+++ +|+|||+||||+|||||+++||+++||+ +|+||||++++|++++++.+
T Consensus 72 ~p~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLaGG~GTRLg~~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~ 151 (486)
T 2yqc_A 72 LPNEQTASTLDLSKDILQNWTELGLKAIGNGEVAVLLMAGGQGTRLGSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLA 151 (486)
T ss_dssp CCGGGEEETTTSCHHHHHHHHHHHHHHHHTTCEEEEEEEESBCGGGTCSSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHH
T ss_pred CCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 98665234334786788999999999885298699997388434478997875643327899969999999999998876
Q ss_pred ----C----CCCCEEEECCCCCHHHHHHHHHHCCCCCC---EEEEEECCCCCCCCCCCC------CCCCCCCCCCCCHHH
Q ss_conf ----9----98748980685324889999997399995---289984498441026799------988761157889213
Q 006541 309 ----G----CNVPLLLMNTAETHDRVQKVLEKYSNSKV---DIHSLSLSQQPHEKSFEG------HSRKDKLYPSSDHSV 371 (641)
Q Consensus 309 ----g----~~iPl~iMtS~~T~~~T~~~l~~~~~fg~---~i~~f~Q~~~P~l~~~~~------~~~~~~~~P~GhG~d 371 (641)
| +.|||+||||+.||+.|++||++|++||+ +|++|+|+++||++. ++ .++.++|+|+||| |
T Consensus 152 ~~~~G~~~~~~ip~~ImtS~~t~~~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~i~~-dg~~i~l~~~~~i~~~P~G~G-g 229 (486)
T 2yqc_A 152 QQYLKSTKKPIINWYIMTSGPTRNATESFFIENNYFGLNSHQVIFFNQGTLPCFNL-QGNKILLELKNSICQSPDGNG-G 229 (486)
T ss_dssp HHHHTCSSCCCCEEEEEECGGGHHHHHHHHHHTGGGGSCGGGEEEEECCEEECBCT-TSSSBCEEETTEECEEECCGG-G
T ss_pred HHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEECC-CCCCCCCCCCCCCCCCCCCCH-H
T ss_conf 64148876774688999789777999999865423698741179995165103867-877212478875040759825-9
Q ss_pred HHHHHHHCCHHHHHHHCCCEEEEEECCCC-CCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEE--CCEEEEEE
Q ss_conf 78999723906999874936999972764-5644397888887652984689970068889743189953--99589998
Q 006541 372 VFLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLR--PGKFQLVD 448 (641)
Q Consensus 372 i~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~Dp~~lg~~~~~~~~~~~evv~k~~~d~kgG~l~~~--~g~~~lvE 448 (641)
+|.+|++||+||+|+++|++|++|+|+|| |+.++||.++||+++++++++++|++|+.+++++|++|++ +|+++++|
T Consensus 230 i~~aL~~sG~Ld~l~~~G~~yi~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~Gvl~~~~~dg~~~vvE 309 (486)
T 2yqc_A 230 LYKALKDNGILDDLNSKGIKHIHMYCVDNCLVKVADPIFIGFAIAKKFDLATKVVRKRDANESVGLIVLDQDNQKPCVIE 309 (486)
T ss_dssp HHHHHHHTTHHHHHHHHTCCEEEEEETTBTTCCTTCHHHHHHHHHHTCSEEEEEEECCSTTCCCCEEEEETTTTEEEEEC
T ss_pred HHHHHHHCCCHHHHHHCCCEEEEEECCCCCEEECCCHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEEECCCCEEEEE
T ss_conf 99999876758999864986999987887302014799999998749978999998688887501899980699789999
Q ss_pred ECCCCCCCCCC---------CCCEEEEECEEEEHHHHHHHHHCCCCC---CCEEECCCCC---C----------CCCCHH
Q ss_conf 31899643278---------885365630106399999986307876---3203201013---8----------989503
Q 006541 449 ITQNPTKQSGG---------KFKFINTRSMWVNLRAIKRLIDTDELK---VENFSSSKEV---N----------DDQIIS 503 (641)
Q Consensus 449 y~q~~~~~~~~---------~~~~fNtnni~~~l~~l~~~~~~~~~~---lp~~~n~K~v---~----------~~~~~q 503 (641)
|+|+|+++++. .|.++||||+|+++++|++++...... ||+|+|+|++ | +||++|
T Consensus 310 y~E~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~l~~L~~~l~~~~~~~~~lp~~v~~Kki~~~d~~~g~~~~p~~pn~~k 389 (486)
T 2yqc_A 310 YSEISQELANKKDPQDSSKLFLRAANIVNHYYSVEFLNKMIPKWISSQKYLPFHIAKKKIPSLNLENGEFYKPTEPNGIK 389 (486)
T ss_dssp GGGSCHHHHHCEETTEEEEESSCEEEEEEEEEEHHHHHHHHHHHTTCTTTSCCEEEEECCCEECTTTCCEECCSSCCEEE
T ss_pred EECCCHHHHHCCCCCCCCCCCCCCEEEEEEEEEHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCEECCCCCCCEEE
T ss_conf 86079878610254456643336306999997399999998752376567754374355573465668153678887365
Q ss_pred HHHHHHHHHHCCC--CCEEEEEEC-CCCCCCCCCC----H-HHHHHHHHCCCCCCCEEECCCC-----CCCCCCEEEECC
Q ss_conf 5676426731288--725799814-6312356883----1-4565210001246714427898-----899989298299
Q 006541 504 RGTAADSAIQFFD--HTIGINVAQ-SRYLPVNSTS----D-LLLLQSDLYTADEGILVQNPAR-----DNPANPSIELGP 570 (641)
Q Consensus 504 lE~~i~d~i~~~~--~~~~i~V~R-~rF~PvKn~~----d-ll~~~sd~y~~~~~~l~~~~~r-----~~~~~P~i~L~~ 570 (641)
||+||||+|++|+ ++.+++|+| +||+||||+. | ....+.|+|.++..+|..+... ..++.|.|.++.
T Consensus 390 lE~~~~d~~~~~~l~~~~~~~V~R~~~FsPvKn~~~~~~dsp~ta~~~l~~~~~~~l~~aG~~~~~~~~~eisp~~sy~g 469 (486)
T 2yqc_A 390 LEQFIFDVFPSVELNKFGCLEVDRLDEFSPLKNADGAKNDTPTTCRNHYLERSSKWVIQNGGVIDNQGLVEVDSKTSYGG 469 (486)
T ss_dssp EECCGGGGGGGSCGGGEEEEEECHHHHCCBCCSCTTSSSSSHHHHHHHHHHHHHHHHHHTTCEECTTCCCBCCTTTCSSS
T ss_pred EEEHHHHHHHHCCCCCEEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCEEECCEEEECC
T ss_conf 41167657764466756999977522356412799987779899999999999999998788626898378865246878
No 9
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Probab=1.00 E-value=1 Score=531.50 Aligned_cols=321 Identities=15% Similarity=0.212 Sum_probs=281.2
Q ss_pred CCCCCCCCCCCCCCCCCCCC-C-HHHHHHHC--CCEEEEEECCCCCCCCCCCCCCEEEECC--CCCCHHHHHHHHHHHH-
Q ss_conf 46788875102778678740-0-89899640--7689999838987878998997114538--9997378988999999-
Q 006541 232 IDSKDEILVVPYESLASISE-D-IAETKMLL--DKLVVVKFNGALGTNMGFSGPKSAIEVK--NNLTPLDLMVDQVESL- 304 (641)
Q Consensus 232 i~~~~~~~~~~y~~l~~~~~-~-~~~~~~~l--~k~avv~LaGGlGTrlG~~~pK~~l~v~--~~~tfldl~~~qi~~l- 304 (641)
+.+.+++.+..|++ .+..- . .+.|.+++ +|+++|+||||+|||||+++||+++||+ +|+||||++++|++++
T Consensus 69 i~p~p~~~~~~~~~-~~~~~~~~~~~Gl~~i~~~kvavViLAGG~GTRLg~~~PK~l~pv~~~~gk~~le~~~e~l~~lq 147 (505)
T 1jv1_A 69 MEPVPREVLGSATR-DQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQ 147 (505)
T ss_dssp CBCCCGGGEEETTT-TGGGHHHHHHHHHHHHHTTCEEEEEECCCCCCTTSCSSCGGGCCCCCTTCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHCCCCCC-CHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 56798676345457-86788999997677640376479997687466577997874456545799809999999999999
Q ss_pred ---HHHHC--CCCCEEEECCCCCHHHHHHHHHHCCCCCC---EEEEEECCCCCCCCCCC----CCCCCCCCCCCCCHHHH
Q ss_conf ---85619--98748980685324889999997399995---28998449844102679----99887611578892137
Q 006541 305 ---NSKYG--CNVPLLLMNTAETHDRVQKVLEKYSNSKV---DIHSLSLSQQPHEKSFE----GHSRKDKLYPSSDHSVV 372 (641)
Q Consensus 305 ---~~~~g--~~iPl~iMtS~~T~~~T~~~l~~~~~fg~---~i~~f~Q~~~P~l~~~~----~~~~~~~~~P~GhG~di 372 (641)
++++| +.+||+||||+.||+.|.+||+++++||+ +|++|+|+++||++..+ ++++.++|+|+||| |+
T Consensus 148 ~la~~~~G~~~~ip~vImtS~~t~e~t~~~f~~~~~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtG-G~ 226 (505)
T 1jv1_A 148 QVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNG-GL 226 (505)
T ss_dssp HHHHHHHSSCCCCCEEEEECTTTHHHHHHHHHHTGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGG-GH
T ss_pred HHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCH-HH
T ss_conf 99887559976630899956888899999997623138886726999825467786788413467752136889945-99
Q ss_pred HHHHHHCCHHHHHHHCCCEEEEEECCCC-CCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCEEEEEEECC
Q ss_conf 8999723906999874936999972764-564439788888765298468997006888974318995399589998318
Q 006541 373 FLSLMKSGTLDLLLVQGKEYALVVDSDN-VAAVADPKIFNHLIQNQIEYCMEVAPVPSIDLRNSLINLRPGKFQLVDITQ 451 (641)
Q Consensus 373 ~~aL~~sG~Ld~l~~~G~eyi~v~nvDN-L~~~~Dp~~lg~~~~~~~~~~~evv~k~~~d~kgG~l~~~~g~~~lvEy~q 451 (641)
|.+|+.||+|++|+++|++|+||+|+|| |++++||.++|+++.++++++++|++|+.+++++|++|.++|+++++||+|
T Consensus 227 ~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~L~~~~d~~~lg~~~~~~~~~~~~v~~k~~~~e~~Gvl~~~dg~~~vvEy~E 306 (505)
T 1jv1_A 227 YRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSE 306 (505)
T ss_dssp HHHHHHTTHHHHHHHTTCCEEEEEETTBTTCCTTCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEETTEEEEECGGG
T ss_pred HHHHHHCCCHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEECCEEEEEEEEE
T ss_conf 99988767489998569987999978842300055999999997599789999976578667434999899189999740
Q ss_pred CCCCCCCC-------CCCEEEEECEEEEHHHHHHHHHCCCCCCCEEECCCCCC------------CCCCHHHHHHHHHHH
Q ss_conf 99643278-------88536563010639999998630787632032010138------------989503567642673
Q 006541 452 NPTKQSGG-------KFKFINTRSMWVNLRAIKRLIDTDELKVENFSSSKEVN------------DDQIISRGTAADSAI 512 (641)
Q Consensus 452 ~~~~~~~~-------~~~~fNtnni~~~l~~l~~~~~~~~~~lp~~~n~K~v~------------~~~~~qlE~~i~d~i 512 (641)
+|+++++. .|.+|||||+|+++++|+++.+.....||+|+|+|+++ .++++|||+||||+|
T Consensus 307 ~p~~~~~~~~~~g~~~~~~~N~~~~~f~l~~L~~i~~~~~~~l~~hv~~Kkip~~d~~g~~v~P~~pn~~klE~~i~d~~ 386 (505)
T 1jv1_A 307 ISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGIKMEKFVFDIF 386 (505)
T ss_dssp SCHHHHHCBCTTSSBSSCEEEEEEEEEEHHHHHHHHHTTGGGCCCEEEEECCCEECTTSCEECCSSCCEEEEECCGGGGG
T ss_pred CCHHHHHHCCCCCCCCCCEEEEEEEEECHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHH
T ss_conf 89878631155664234500499899639999999774004677435145205246888775778987221898998787
Q ss_pred HCCCCCEEEEEECC-CCCCCCCCCH------HHHHHHHHCCCCCCCEEE
Q ss_conf 12887257998146-3123568831------456521000124671442
Q 006541 513 QFFDHTIGINVAQS-RYLPVNSTSD------LLLLQSDLYTADEGILVQ 554 (641)
Q Consensus 513 ~~~~~~~~i~V~R~-rF~PvKn~~d------ll~~~sd~y~~~~~~l~~ 554 (641)
++|+++++++|+|+ ||+||||+++ ....+.|+|.++..+|..
T Consensus 387 ~~~~~~~~~~V~R~~~FsPvKn~~~~~~~dsp~ta~~~l~~~~~~~l~~ 435 (505)
T 1jv1_A 387 QFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTARHALMSLHHCWVLN 435 (505)
T ss_dssp GGCSSEEEEEECHHHHCCBCCSCTTSSSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCEEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 5138358999776212441137999888879899999999999999998
No 10
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=1.00 E-value=1 Score=403.47 Aligned_cols=195 Identities=28% Similarity=0.472 Sum_probs=176.2
Q ss_pred HHHHHHHHCCCEECCCCCCC--CCCCCEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Q ss_conf 85999988092322356877--8768703103991575098899999999999999986599199992774379999999
Q 006541 6 IIIQKLLSTNAHLGRRVAAH--HFKQYTYGFRNAMAIIDSDKTLICLRNACHFISLLARQRAAFMFVNTNPLFDEIVLQM 83 (641)
Q Consensus 6 i~i~~Ll~a~~HlG~~~~~~--~m~~yIyg~r~gi~IInL~~T~~~L~~A~~~I~~i~~~~g~ILfV~T~~~~~~~v~~~ 83 (641)
+++++||+||+|+||+...| +|++||||.|||+|||||++|+.+|++|+++|..+++++|+||||||+++++++|+++
T Consensus 5 i~~~~LL~AgvH~Gh~t~~wnpkM~~YIyg~RngihIIdL~kT~~~L~~A~~~i~~~a~~gg~iLfVgTk~~a~~~V~~~ 84 (256)
T 2vqe_B 5 ITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRME 84 (256)
T ss_dssp -CCCSTTCSSTTCCCBSSSCCGGGSTTEEEEETTEEEECHHHHHHHHHHHHHHHHHHHTTTCCEEEECCSSSSTTTTTTT
T ss_pred CCHHHHHHCCEEECCCCCCCCCCCCCCEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
T ss_conf 54999987196654686878974212055541980897099999999999999999996899799996777789999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH----------------CC-----------CC--CCC----CCCCCCE
Q ss_conf 999399766677611138534478650234310----------------00-----------00--269----9898876
Q 006541 84 TQKIGCYNPNMNALWRMGGFLTNSSSPKKFRSR----------------NK-----------KI--RFG----PTKLPDC 130 (641)
Q Consensus 84 a~~~g~~~i~~~~rW~igG~LTN~~~~~k~~~~----------------~k-----------k~--~~g----~~~~Pdl 130 (641)
|+++|++|+ ++|| +||+||||.++++.+.+ .| |+ +|| +.++||+
T Consensus 85 A~~~g~~yv--~~RW-lgG~LTN~~ti~~~i~~l~~le~~~~~g~f~~l~Kke~~~~~r~~~kL~k~lgGik~m~~~Pdl 161 (256)
T 2vqe_B 85 AERAGMPYV--NQRW-LGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDA 161 (256)
T ss_dssp TTSSSCCEE--CSCC-CTTTTTTHHHHHHHHHHHHHHHHHTTSTTSSCSCHHHHTTHHHHHHHHHHHSTTGGGCSSCCSE
T ss_pred HHHHCCEEE--CCEE-CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCE
T ss_conf 999499115--6723-7985348889877888889999886447501366778988899999999862170244658988
Q ss_pred EEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEECCCC-HHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99718996603899986169989999579999999984279614998-06479999999999999976452389985
Q 006541 131 VVVLDTERKSSVIMEAAKLQVPIVALVDSSMPLDVYSKITYPVPGND-SVQFVYLLCNMITKTFLVEQKKLGLLKDD 206 (641)
Q Consensus 131 iii~dp~~~~~ai~EA~~l~IPiIalvDTd~~~~~~~~IdypIP~Nd-S~~si~li~~ll~~ail~~~~~~~~~~~~ 206 (641)
+||+||..+++|++||.++||||||+|||||||+ .||||||||| |.+||+|++|+|+++|++|++.+...-+.
T Consensus 162 l~V~Dp~~e~~Ai~EA~~l~IPvIaivDTn~dp~---~VdypIP~NDds~~sI~Li~~~la~ai~~g~~~r~~~~~~ 235 (256)
T 2vqe_B 162 IFVVDPTKEAIAVREARKLFIPVIALADTDSDPD---LVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPS 235 (256)
T ss_dssp EEESCTTTTHHHHHHHHHTTCCCEECCCTTSCGG---GCSEECCSCSSCHHHHHHHHHHHHHHHHTTTSCCCCSCTT
T ss_pred EEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCH---HCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 9994775353999999873998799825899904---5225753687529899999999999999998630032244
Done!