Query 006545
Match_columns 641
No_of_seqs 501 out of 3427
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 18:25:52 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006545.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2173-2177//hhsearch_pdb/006545hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 406.8 22.1 259 280-554 40-320 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 406.5 19.1 258 281-554 13-290 (299)
3 3omv_A RAF proto-oncogene seri 1.0 1 1 403.9 22.9 261 280-554 35-301 (307)
4 4gt4_A Tyrosine-protein kinase 1.0 1 1 401.9 22.1 254 282-551 27-304 (308)
5 4b9d_A Serine/threonine-protei 1.0 1 1 396.9 17.9 246 281-544 24-275 (350)
6 4ase_A Vascular endothelial gr 1.0 1 1 395.4 17.8 266 271-554 54-348 (353)
7 4fih_A Serine/threonine-protei 1.0 1 1 394.5 21.2 244 281-543 74-321 (346)
8 4fie_A Serine/threonine-protei 1.0 1 1 394.2 23.4 244 281-543 151-398 (423)
9 4g3f_A NF-kappa-beta-inducing 1.0 1 1 391.8 18.6 257 279-554 56-317 (336)
10 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 390.2 16.7 243 281-542 32-281 (311)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=406.75 Aligned_cols=259 Identities=23% Similarity=0.409 Sum_probs=214.7
Q ss_pred CCCCCCCCEEECCCCEEEEEEEEC-------CEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCC--CCEE
Q ss_conf 079776520100184689999988-------9289999954799999113999999985079996135704105--8408
Q 006545 280 THNFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACP--EVWT 350 (641)
Q Consensus 280 ~~~f~~~~~LG~G~fG~Vykg~~~-------~~~vAiK~~~~~~~~~~~~f~~Ei~iL~~l~HpnIv~l~g~~~--~~~~ 350 (641)
..+|.+.++||+|+||.||+|.++ +..||||+++.......+.|.+|+.+|++++|||||+++|+|. ...+
T Consensus 40 ~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~ 119 (329)
T 4aoj_A 40 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLL 119 (329)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred HHHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEE
T ss_conf 89928877971477848998998786657789699999977579799999999999998589989996989999899899
Q ss_pred EEEEECCCCCHHHHHHCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCC
Q ss_conf 9997258999233310279------------9999999999999999899999987309996010567888468556982
Q 006545 351 LVYEYLPNGSLEDRLSCKD------------NSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFV 418 (641)
Q Consensus 351 LV~Ey~~~gsL~~~L~~~~------------~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDIKp~NILld~~~~ 418 (641)
||||||++|+|.++|.... ...++++..++.|+.|++.||.|||+ ++||||||||+||||+.++.
T Consensus 120 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLKp~NILl~~~~~ 196 (329)
T 4aoj_A 120 MVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG---LHFVHRDLATRNCLVGQGLV 196 (329)
T ss_dssp EEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTTE
T ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC---CCEECCCCCHHHEEECCCCC
T ss_conf 999827999399999860754100122112457889999999999999999999840---88422666676489889996
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCHHHHHH
Q ss_conf 01124420001453434678864211379998756689000004999950368879999999991-99999983799999
Q 006545 419 SKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLT-GRPALGITKEVQYA 497 (641)
Q Consensus 419 vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~s~~sDVwSlGviL~Ellt-G~~Pf~~~~~~~~~ 497 (641)
+||+|||+|+......... ..+...||+.|||||++.+..|+.++|||||||+||||+| |++||...+..+..
T Consensus 197 ~Ki~DFGla~~~~~~~~~~------~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~ 270 (329)
T 4aoj_A 197 VKIGDFGMSRDIYSTDYYR------VGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAI 270 (329)
T ss_dssp EEECCCC----------------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHH
T ss_pred EEECCCCCCEECCCCCCCE------ECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 8976660333656787530------0476455656658265447999966300105789999982899999998999999
Q ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 862411112588789998235999999999985113399999479999998987860
Q 006545 498 LDTGKLKNLLDPLAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMRAS 554 (641)
Q Consensus 498 ~~~~~~~~~ld~~~~~~p~~~~~~l~~Li~~Cl~~dP~~RPs~~e~v~~~L~~l~~~ 554 (641)
...... .....|..+++.+.+|+.+||+.+|.+||++.+ |...|+.+...
T Consensus 271 ~~i~~g------~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~e-i~~~L~~l~~~ 320 (329)
T 4aoj_A 271 DCITQG------RELERPRACPPEVYAIMRGCWQREPQQRHSIKD-VHARLQALAQA 320 (329)
T ss_dssp HHHHHT------CCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHH-HHHHHHHHHHS
T ss_pred HHHHCC------CCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHH-HHHHHHHHHHC
T ss_conf 999808------989986446399999999974759657929999-99999987458
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=406.47 Aligned_cols=258 Identities=23% Similarity=0.419 Sum_probs=214.5
Q ss_pred CCCCCCCEEECCCCEEEEEEEEC-------CEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCC--CCEEE
Q ss_conf 79776520100184689999988-------9289999954799999113999999985079996135704105--84089
Q 006545 281 HNFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACP--EVWTL 351 (641)
Q Consensus 281 ~~f~~~~~LG~G~fG~Vykg~~~-------~~~vAiK~~~~~~~~~~~~f~~Ei~iL~~l~HpnIv~l~g~~~--~~~~L 351 (641)
.+|.+.+.||+|+||.||+|.+. +..||||+++.......+.|.+|+.+|++++|||||+++|+|. +..++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956998999
Q ss_pred EEEECCCCCHHHHHHCC----------CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCCCC
Q ss_conf 99725899923331027----------99999999999999999899999987309996010567888468556982011
Q 006545 352 VYEYLPNGSLEDRLSCK----------DNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKL 421 (641)
Q Consensus 352 V~Ey~~~gsL~~~L~~~----------~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDIKp~NILld~~~~vKL 421 (641)
|||||++|+|.++|... .....+++..++.|+.|++.||.|||+ ++|+||||||+|||++.++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEE
T ss_conf 998589996899998608642111235777889999999999999999999975---99046765776389879986898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHH
Q ss_conf 24420001453434678864211379998756689000004999950368879999999991-99999983799999862
Q 006545 422 SDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLT-GRPALGITKEVQYALDT 500 (641)
Q Consensus 422 ~DFGla~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~s~~sDVwSlGviL~Ellt-G~~Pf~~~~~~~~~~~~ 500 (641)
+|||+|+.......... .....||+.|||||++.+..|+.++|||||||+||||+| |++||...+..+.....
T Consensus 170 ~DFGla~~~~~~~~~~~------~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i 243 (299)
T 4asz_A 170 GDFGMSRDVYSTDYYRV------GGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECI 243 (299)
T ss_dssp CCCSCHHHHTGGGCEEE------TTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHH
T ss_pred CCCCCCEECCCCCCEEE------CCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 87300100678874166------475134701038898707999703667788999999980899999998999999999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 411112588789998235999999999985113399999479999998987860
Q 006545 501 GKLKNLLDPLAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMRAS 554 (641)
Q Consensus 501 ~~~~~~ld~~~~~~p~~~~~~l~~Li~~Cl~~dP~~RPs~~e~v~~~L~~l~~~ 554 (641)
... .....|..++..+.+|+.+||+.+|.+||++.+ +...|+.+...
T Consensus 244 ~~~------~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~-i~~~L~~~~~~ 290 (299)
T 4asz_A 244 TQG------RVLQRPRTCPQEVYELMLGCWQREPHMRKNIKG-IHTLLQNLAKA 290 (299)
T ss_dssp HHT------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH-HHHHHHHHHHH
T ss_pred HCC------CCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHH-HHHHHHHHHHC
T ss_conf 808------988997414399999999976879668929999-99999877763
No 3
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=403.93 Aligned_cols=261 Identities=25% Similarity=0.416 Sum_probs=210.6
Q ss_pred CCCCCCCCEEECCCCEEEEEEEECCEEEEEEEECCCCCC--CCHHHHHHHHHHHCCCCCCEEEEECCC-CCCEEEEEEEC
Q ss_conf 079776520100184689999988928999995479999--911399999998507999613570410-58408999725
Q 006545 280 THNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQ--GPSEFQQEIDILSKIRHPNLVTLVGAC-PEVWTLVYEYL 356 (641)
Q Consensus 280 ~~~f~~~~~LG~G~fG~Vykg~~~~~~vAiK~~~~~~~~--~~~~f~~Ei~iL~~l~HpnIv~l~g~~-~~~~~LV~Ey~ 356 (641)
..++.+.++||+|+||+||+|.+.+ .||||+++..... ..+.|.+|+.++++++|||||+++|+| .+..+||||||
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~~-~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~iVmEy~ 113 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWHG-DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWC 113 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESSS-EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECC
T ss_pred HHHEEEEEEEEECCCCEEEEEEECC-CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEECC
T ss_conf 7994984498208886899999899-689999972689999999999999999858998874699999789589999748
Q ss_pred CCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89992333102799999999999999999899999987309996010567888468556982011244200014534346
Q 006545 357 PNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEIS 436 (641)
Q Consensus 357 ~~gsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDIKp~NILld~~~~vKL~DFGla~~~~~~~~~ 436 (641)
+||+|.++|... ..++++..+..|+.|++.||.|||+ ++||||||||+||||+.++.+||+|||+|+........
T Consensus 114 ~gGsL~~~l~~~--~~~l~~~~~~~i~~qia~gL~yLH~---~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~ 188 (307)
T 3omv_A 114 EGSSLYKHLHVQ--ETKFQMFQLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGS 188 (307)
T ss_dssp SSCBHHHHHHTS--CCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCSSSEEEETTEEEEECCCSSCBC-------
T ss_pred CCCCHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEEECCCCEECCCCCCC
T ss_conf 998788987524--8999999999999999999999977---99527855789978889990899441575424667764
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 78864211379998756689000004---999950368879999999991999999837999998624111125887899
Q 006545 437 SNNTTLCCRTDPKGTFAYMDPEFLAS---GELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLAGD 513 (641)
Q Consensus 437 ~~~~~~~~~~~~~Gt~~Y~APE~l~~---~~~s~~sDVwSlGviL~ElltG~~Pf~~~~~~~~~~~~~~~~~~ld~~~~~ 513 (641)
.. ....+||+.|||||++.+ +.|+.++|||||||+||||+||++||...+......... ......|....
T Consensus 189 ~~------~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~-~~~~~~p~~~~ 261 (307)
T 3omv_A 189 QQ------VEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMV-GRGYASPDLSK 261 (307)
T ss_dssp -----------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHH-HTTCCCCCSTT
T ss_pred EE------ECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH-HCCCCCCCCCC
T ss_conf 03------156446877249878614689987868775728999999997889989999699999999-65888887200
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 98235999999999985113399999479999998987860
Q 006545 514 WPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMRAS 554 (641)
Q Consensus 514 ~p~~~~~~l~~Li~~Cl~~dP~~RPs~~e~v~~~L~~l~~~ 554 (641)
.+..++..+.+|+.+||+.+|.+||++.+ |+..|+.++..
T Consensus 262 ~~~~~~~~l~~li~~cl~~dP~~RPs~~e-i~~~Le~l~~~ 301 (307)
T 3omv_A 262 LYKNCPKAMKRLVADCVKKVKEERPLFPQ-ILSSIELLQHS 301 (307)
T ss_dssp SCTTSCHHHHHHHHHHTCSSSTTSCCHHH-HHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHCCCCHHHCCCHHH-HHHHHHHHHCC
T ss_conf 35445699999999975779768909899-99999997450
No 4
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=401.91 Aligned_cols=254 Identities=22% Similarity=0.363 Sum_probs=208.9
Q ss_pred CCCCCCEEECCCCEEEEEEEEC-------CEEEEEEEECCCCCC-CCHHHHHHHHHHHCCCCCCEEEEECCCC--CCEEE
Q ss_conf 9776520100184689999988-------928999995479999-9113999999985079996135704105--84089
Q 006545 282 NFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSLQ-GPSEFQQEIDILSKIRHPNLVTLVGACP--EVWTL 351 (641)
Q Consensus 282 ~f~~~~~LG~G~fG~Vykg~~~-------~~~vAiK~~~~~~~~-~~~~f~~Ei~iL~~l~HpnIv~l~g~~~--~~~~L 351 (641)
++.+.++||+|+||.||+|.+. +..||||+++..... ..+.|.+|+.++++++|||||+++|+|. ...++
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEE
T ss_conf 88586691358884899999857765888869999998801496899999999999985899898773649988998899
Q ss_pred EEEECCCCCHHHHHHCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCC
Q ss_conf 9972589992333102799-------------999999999999999899999987309996010567888468556982
Q 006545 352 VYEYLPNGSLEDRLSCKDN-------------SPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFV 418 (641)
Q Consensus 352 V~Ey~~~gsL~~~L~~~~~-------------~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDIKp~NILld~~~~ 418 (641)
|||||++|+|.++|..... ...+++..++.|+.|++.||.|||+ ++||||||||+||||+.++.
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLK~~NILl~~~~~ 183 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSS---HHVVHKDLATRNVLVYDKLN 183 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGC
T ss_pred EEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCEEECCCCC
T ss_conf 998189994999998627654333322111124689999999999999999999986---89977873623068879997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCHHHHHH
Q ss_conf 01124420001453434678864211379998756689000004999950368879999999991-99999983799999
Q 006545 419 SKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLT-GRPALGITKEVQYA 497 (641)
Q Consensus 419 vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~s~~sDVwSlGviL~Ellt-G~~Pf~~~~~~~~~ 497 (641)
+||+|||+|+......... ..+...||+.|||||++.++.|+.++|||||||+||||+| |++||...+..+..
T Consensus 184 ~Ki~DFGlar~~~~~~~~~------~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~ 257 (308)
T 4gt4_A 184 VKISDLGLFREVYAADYYK------LLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVV 257 (308)
T ss_dssp EEECCSCCBCGGGGGGCBC------SSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHH
T ss_pred EEECCCCCCEECCCCCCEE------EECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf 8988760202336777404------7345125776569899827999963000157999999996899999998999999
Q ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 862411112588789998235999999999985113399999479999998987
Q 006545 498 LDTGKLKNLLDPLAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPM 551 (641)
Q Consensus 498 ~~~~~~~~~ld~~~~~~p~~~~~~l~~Li~~Cl~~dP~~RPs~~e~v~~~L~~l 551 (641)
..... ......|..++..+.+|+.+||+.+|.+||++.+ |...|+.+
T Consensus 258 ~~i~~------~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~e-i~~~L~a~ 304 (308)
T 4gt4_A 258 EMIRN------RQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKD-IHSRLRAW 304 (308)
T ss_dssp HHHHT------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH-HHHHHHTS
T ss_pred HHHHC------CCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHH-HHHHHHHC
T ss_conf 99981------9989996203699999999975879657929999-99999853
No 5
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=396.86 Aligned_cols=246 Identities=23% Similarity=0.343 Sum_probs=206.2
Q ss_pred CCCCCCCEEECCCCEEEEEEEEC--CEEEEEEEECCCCCCC--CHHHHHHHHHHHCCCCCCEEEEECCCC--CCEEEEEE
Q ss_conf 79776520100184689999988--9289999954799999--113999999985079996135704105--84089997
Q 006545 281 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQG--PSEFQQEIDILSKIRHPNLVTLVGACP--EVWTLVYE 354 (641)
Q Consensus 281 ~~f~~~~~LG~G~fG~Vykg~~~--~~~vAiK~~~~~~~~~--~~~f~~Ei~iL~~l~HpnIv~l~g~~~--~~~~LV~E 354 (641)
.+|.+.+.||+|+||.||+|.+. +..||||++....... ...|.+|+.+|++++|||||++++++. +..|||||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 25588479702779399999988999899999986587897999999999999987799898919999998999999994
Q ss_pred ECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 25899923331027999999999999999998999999873099960105678884685569820112442000145343
Q 006545 355 YLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNE 434 (641)
Q Consensus 355 y~~~gsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDIKp~NILld~~~~vKL~DFGla~~~~~~~ 434 (641)
||+||+|.++|... ....+++..++.|+.|++.||.|||+ +||+||||||+||||+.++.+||+|||+|+.+....
T Consensus 104 y~~gg~L~~~i~~~-~~~~~~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~ 179 (350)
T 4b9d_A 104 YCEGGDLFKRINAQ-KGVLFQEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV 179 (350)
T ss_dssp CCTTCBHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHHH---TTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHH
T ss_pred CCCCCCHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHH---CCEEECCCCHHHEEECCCCCEEECCCCCCEEECCCC
T ss_conf 88998399999973-89999789999999999999999998---991513597899798789998976465214406885
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 46788642113799987566890000049999503688799999999919999998379999986241111258878999
Q 006545 435 ISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLAGDW 514 (641)
Q Consensus 435 ~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~s~~sDVwSlGviL~ElltG~~Pf~~~~~~~~~~~~~~~~~~ld~~~~~~ 514 (641)
.. ....+||+.|||||++.+..|+.++|||||||+||||+||++||...+.......... ..+ ...
T Consensus 180 ~~--------~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~--~~~----~~~ 245 (350)
T 4b9d_A 180 EL--------ARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIIS--GSF----PPV 245 (350)
T ss_dssp HH--------HHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHH--TCC----CCC
T ss_pred CC--------CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC--CCC----CCC
T ss_conf 41--------0145788360399998799989599999999999999978799899699999999980--899----999
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 823599999999998511339999947999
Q 006545 515 PFVQAEQLANLAMRCCEMSRKSRPELGKDV 544 (641)
Q Consensus 515 p~~~~~~l~~Li~~Cl~~dP~~RPs~~e~v 544 (641)
+...+..+.+|+.+||..||.+||++.+++
T Consensus 246 ~~~~s~~~~~li~~~L~~dP~~R~s~~e~l 275 (350)
T 4b9d_A 246 SLHYSYDLRSLVSQLFKRNPRDRPSVNSIL 275 (350)
T ss_dssp CTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCHHHCCCHHHHH
T ss_conf 755799999999998558966790899996
No 6
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=395.39 Aligned_cols=266 Identities=24% Similarity=0.360 Sum_probs=215.0
Q ss_pred CCHHHHHHHCCCCCCCCEEECCCCEEEEEEEECC-------EEEEEEEECCCCCCC-CHHHHHHHHHHHCCCC-CCEEEE
Q ss_conf 8856673210797765201001846899999889-------289999954799999-1139999999850799-961357
Q 006545 271 FSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRH-------MQVAIKMLHPHSLQG-PSEFQQEIDILSKIRH-PNLVTL 341 (641)
Q Consensus 271 ~~~~ei~~~~~~f~~~~~LG~G~fG~Vykg~~~~-------~~vAiK~~~~~~~~~-~~~f~~Ei~iL~~l~H-pnIv~l 341 (641)
|...+++....+|.+.+.||+|+||.||+|.+.+ +.||||++....... ...|.+|+.+|.+++| ||||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 88855170579959820982178959999998688854477599999976235868999999999999975799848778
Q ss_pred ECCCC---CCEEEEEEECCCCCHHHHHHCCC-------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
Q ss_conf 04105---84089997258999233310279-------------999999999999999989999998730999601056
Q 006545 342 VGACP---EVWTLVYEYLPNGSLEDRLSCKD-------------NSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGD 405 (641)
Q Consensus 342 ~g~~~---~~~~LV~Ey~~~gsL~~~L~~~~-------------~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrD 405 (641)
+|+|. ...++|||||++|+|.++|.... ....+++..++.|+.|++.||.|||+ ++|||||
T Consensus 134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~---~~iiHRD 210 (353)
T 4ase_A 134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRD 210 (353)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHH---TTCCCSC
T ss_pred EEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEECCC
T ss_conf 8999946977999998389897999997435666543334101103568999999999999999876762---7843574
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH-C
Q ss_conf 788846855698201124420001453434678864211379998756689000004999950368879999999991-9
Q 006545 406 LKPANILLDANFVSKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLT-G 484 (641)
Q Consensus 406 IKp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~s~~sDVwSlGviL~Ellt-G 484 (641)
|||+|||++.++.+||+|||+|+.+....... ..+...||+.|||||++.+..|+.++|||||||+||||+| |
T Consensus 211 LK~~NILl~~~~~vKi~DFGlar~~~~~~~~~------~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G 284 (353)
T 4ase_A 211 LAARNILLSEKNVVKICDFGLARDIYKDPDYV------RKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLG 284 (353)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSE------EETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCEEECCCCCEEECCCHHHHHCCCCCCCE------EECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCC
T ss_conf 67211305799978979654322245688720------325401466656989994699997553740689999998189
Q ss_pred CCCCCCCHH---HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999998379---9999862411112588789998235999999999985113399999479999998987860
Q 006545 485 RPALGITKE---VQYALDTGKLKNLLDPLAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMRAS 554 (641)
Q Consensus 485 ~~Pf~~~~~---~~~~~~~~~~~~~ld~~~~~~p~~~~~~l~~Li~~Cl~~dP~~RPs~~e~v~~~L~~l~~~ 554 (641)
++||..... +...+..+. ....|..+++.+.+|+.+||+.+|.+||++.+ +.+.|..+...
T Consensus 285 ~~Pf~~~~~~~~~~~~i~~g~--------~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~e-il~~L~~llq~ 348 (353)
T 4ase_A 285 ASPYPGVKIDEEFCRRLKEGT--------RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSE-LVEHLGNLLQA 348 (353)
T ss_dssp CCSSTTCCCSHHHHHHHHHTC--------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHH-HHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHCCC--------CCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHH-HHHHHHHHHHH
T ss_conf 999999898999999997389--------88888657899999999976869667939999-99999999987
No 7
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=394.46 Aligned_cols=244 Identities=23% Similarity=0.322 Sum_probs=207.0
Q ss_pred CCCCCCCEEECCCCEEEEEEEEC--CEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCC--CCCEEEEEEEC
Q ss_conf 79776520100184689999988--928999995479999911399999998507999613570410--58408999725
Q 006545 281 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGAC--PEVWTLVYEYL 356 (641)
Q Consensus 281 ~~f~~~~~LG~G~fG~Vykg~~~--~~~vAiK~~~~~~~~~~~~f~~Ei~iL~~l~HpnIv~l~g~~--~~~~~LV~Ey~ 356 (641)
..|+...+||+|+||.||+|.+. +..||||++........+.+.+|+.+|+.++|||||++++++ .+..|||||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89992333102799999999999999999899999987309996010567888468556982011244200014534346
Q 006545 357 PNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEIS 436 (641)
Q Consensus 357 ~~gsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDIKp~NILld~~~~vKL~DFGla~~~~~~~~~ 436 (641)
+||+|.+++.. ..+++..+..|+.|++.||.|||+ +|||||||||+||||+.++.+||+|||+|+.+......
T Consensus 154 ~gg~L~~~l~~----~~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~ 226 (346)
T 4fih_A 154 EGGALTDIVTH----TRMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR 226 (346)
T ss_dssp TTEEHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCC
T ss_pred CCCCHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCCC
T ss_conf 99808999871----898999999999999999999998---88355627889978879998899027575366788775
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 78864211379998756689000004999950368879999999991999999837999998624111125887899982
Q 006545 437 SNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLAGDWPF 516 (641)
Q Consensus 437 ~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~s~~sDVwSlGviL~ElltG~~Pf~~~~~~~~~~~~~~~~~~ld~~~~~~p~ 516 (641)
....+||+.|||||++.+..|+.++|||||||++|||++|++||...+.......... ...+ ....+.
T Consensus 227 --------~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~---~~~~-~~~~~~ 294 (346)
T 4fih_A 227 --------RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRD---NLPP-RLKNLH 294 (346)
T ss_dssp --------BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHH---SSCC-CCSCGG
T ss_pred --------CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC---CCCC-CCCCCC
T ss_conf --------3465627582799997799999689999999999999978799898599999999971---7999-887502
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 359999999999851133999994799
Q 006545 517 VQAEQLANLAMRCCEMSRKSRPELGKD 543 (641)
Q Consensus 517 ~~~~~l~~Li~~Cl~~dP~~RPs~~e~ 543 (641)
..+..+.+|+.+||..||.+||++.++
T Consensus 295 ~~s~~~~dli~~~L~~dP~~R~ta~e~ 321 (346)
T 4fih_A 295 KVSPSLKGFLDRLLVRDPAQRATAAEL 321 (346)
T ss_dssp GSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred CCCHHHHHHHHHHCCCCHHHCCCHHHH
T ss_conf 299999999999867995689099999
No 8
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=394.22 Aligned_cols=244 Identities=23% Similarity=0.320 Sum_probs=207.0
Q ss_pred CCCCCCCEEECCCCEEEEEEEEC--CEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCC--CCCEEEEEEEC
Q ss_conf 79776520100184689999988--928999995479999911399999998507999613570410--58408999725
Q 006545 281 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGAC--PEVWTLVYEYL 356 (641)
Q Consensus 281 ~~f~~~~~LG~G~fG~Vykg~~~--~~~vAiK~~~~~~~~~~~~f~~Ei~iL~~l~HpnIv~l~g~~--~~~~~LV~Ey~ 356 (641)
..|+...+||+|+||.||+|.+. |..||||++........+.+.+|+.+|+.++|||||++++++ .+.+|||||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 84386169624818489999999999899999986255468999999999998579989871689999899999999698
Q ss_pred CCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89992333102799999999999999999899999987309996010567888468556982011244200014534346
Q 006545 357 PNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEIS 436 (641)
Q Consensus 357 ~~gsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDIKp~NILld~~~~vKL~DFGla~~~~~~~~~ 436 (641)
+||+|.+++.. ..+++..+..|+.|++.||.|||+ +|||||||||+||||+.++.+||+|||+|+.+......
T Consensus 231 ~gG~L~~~i~~----~~l~e~~~~~~~~qil~aL~ylH~---~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~ 303 (423)
T 4fie_A 231 EGGALTDIVTH----TRMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR 303 (423)
T ss_dssp TTEEHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCC
T ss_pred CCCCHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCCHHHEEECCCCCEEEECCCCCEECCCCCCC
T ss_conf 99828988761----698999999999999999999998---89044657877789858999898037265477788764
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 78864211379998756689000004999950368879999999991999999837999998624111125887899982
Q 006545 437 SNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLAGDWPF 516 (641)
Q Consensus 437 ~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~s~~sDVwSlGviL~ElltG~~Pf~~~~~~~~~~~~~~~~~~ld~~~~~~p~ 516 (641)
....+||+.|||||++.+..|+.++|||||||++|||++|++||...+.......... ...+. ...+.
T Consensus 304 --------~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~---~~~~~-~~~~~ 371 (423)
T 4fie_A 304 --------RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRD---NLPPR-LKNLH 371 (423)
T ss_dssp --------BCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHH---SCCCC-CSCTT
T ss_pred --------CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC---CCCCC-CCCCC
T ss_conf --------3466647472799997799999689999999999999978799898699999999972---79988-76501
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 359999999999851133999994799
Q 006545 517 VQAEQLANLAMRCCEMSRKSRPELGKD 543 (641)
Q Consensus 517 ~~~~~l~~Li~~Cl~~dP~~RPs~~e~ 543 (641)
..+..+.+|+.+||..||.+||++.++
T Consensus 372 ~~s~~~~dli~~~L~~dP~~R~ta~el 398 (423)
T 4fie_A 372 KVSPSLKGFLDRLLVRDPAQRATAAEL 398 (423)
T ss_dssp SSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred CCCHHHHHHHHHHCCCCHHHCCCHHHH
T ss_conf 299999999999867895689099999
No 9
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=391.79 Aligned_cols=257 Identities=21% Similarity=0.239 Sum_probs=206.8
Q ss_pred HCCCCCCCCEEECCCCEEEEEEEEC--CEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCC--CCEEEEEE
Q ss_conf 1079776520100184689999988--9289999954799999113999999985079996135704105--84089997
Q 006545 279 ATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACP--EVWTLVYE 354 (641)
Q Consensus 279 ~~~~f~~~~~LG~G~fG~Vykg~~~--~~~vAiK~~~~~~~~~~~~f~~Ei~iL~~l~HpnIv~l~g~~~--~~~~LV~E 354 (641)
....|....+||+|+||.||+|.+. +..||||++..... +.+|+.+++.++|||||++++++. +..|||||
T Consensus 56 ~~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmE 130 (336)
T 4g3f_A 56 EVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFME 130 (336)
T ss_dssp TTTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred CHHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-----HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 53351768685138780999999889998999999788886-----9999999985799899939999998999999996
Q ss_pred ECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCC-CCCCCCCCCCCCCCCC
Q ss_conf 258999233310279999999999999999989999998730999601056788846855698-2011244200014534
Q 006545 355 YLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANF-VSKLSDFGISRFLSQN 433 (641)
Q Consensus 355 y~~~gsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDIKp~NILld~~~-~vKL~DFGla~~~~~~ 433 (641)
||+||+|.++|... .++++..+..|+.|++.||.|||+ ++||||||||+||||+.++ .+||+|||+|+.+...
T Consensus 131 y~~gg~L~~~l~~~---~~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~ 204 (336)
T 4g3f_A 131 LLEGGSLGQLIKQM---GCLPEDRALYYLGQALEGLEYLHT---RRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPD 204 (336)
T ss_dssp CCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCCGGGEEECTTSCCEEECCCTTCEEC---
T ss_pred CCCCCCHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHH---CCCEECCCCHHHEEEECCCCEEEEEECCCCEECCCC
T ss_conf 65998699999876---999999999999999999999998---890426167788799589997999627877685678
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 34678864211379998756689000004999950368879999999991999999837999998624111125887899
Q 006545 434 EISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLAGD 513 (641)
Q Consensus 434 ~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~s~~sDVwSlGviL~ElltG~~Pf~~~~~~~~~~~~~~~~~~ld~~~~~ 513 (641)
...... ......+||+.|||||++.+..|+.++|||||||++|||+||++||...+........... .+....
T Consensus 205 ~~~~~~---~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~----~~~~~~ 277 (336)
T 4g3f_A 205 GLGKSL---LTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASE----PPPIRE 277 (336)
T ss_dssp ------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHS----CCGGGG
T ss_pred CCCCCE---ECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC----CCCCHH
T ss_conf 765402---2178545580200899988999890899999999999999786998998999999999808----998002
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 98235999999999985113399999479999998987860
Q 006545 514 WPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMRAS 554 (641)
Q Consensus 514 ~p~~~~~~l~~Li~~Cl~~dP~~RPs~~e~v~~~L~~l~~~ 554 (641)
.|..++..+.+|+.+||..||.+||++.+ +.+.|......
T Consensus 278 ~~~~~s~~~~~li~~~L~~dP~~R~sa~e-l~~~l~~~l~~ 317 (336)
T 4g3f_A 278 IPPSCAPLTAQAIQEGLRKEPVHRASAME-LRRKVGKALQE 317 (336)
T ss_dssp SCTTSCHHHHHHHHHHTCSSGGGSCCHHH-HHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCCHHHCCCHHH-HHHHHHHHHHH
T ss_conf 58667999999999976289768959999-99999999754
No 10
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=390.16 Aligned_cols=243 Identities=25% Similarity=0.355 Sum_probs=206.1
Q ss_pred CCCCCCCEEECCCCEEEEEEEEC--CEEEEEEEECCC---CCCCCHHHHHHHHHHHCCCCCCEEEEECCCC--CCEEEEE
Q ss_conf 79776520100184689999988--928999995479---9999113999999985079996135704105--8408999
Q 006545 281 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEIDILSKIRHPNLVTLVGACP--EVWTLVY 353 (641)
Q Consensus 281 ~~f~~~~~LG~G~fG~Vykg~~~--~~~vAiK~~~~~---~~~~~~~f~~Ei~iL~~l~HpnIv~l~g~~~--~~~~LV~ 353 (641)
.+|++.+.||+|+||+||+|... +..||||++.+. .......+.+|+.+|+.++|||||++++++. +..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
T ss_conf 23689889831648499999999999899999988888779789999999999998679989891999997389899999
Q ss_pred EECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 72589992333102799999999999999999899999987309996010567888468556982011244200014534
Q 006545 354 EYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQN 433 (641)
Q Consensus 354 Ey~~~gsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDIKp~NILld~~~~vKL~DFGla~~~~~~ 433 (641)
|||+||+|.+++.. ...+++..+..|+.|++.||.|||+ +||+||||||+|||++.++.+||+|||+|+.+...
T Consensus 112 Ey~~gG~L~~~i~~---~~~l~e~~~~~~~~qi~~al~ylH~---~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~ 185 (311)
T 4aw0_A 112 SYAKNGELLKYIRK---IGSFDETCTRFYTAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE 185 (311)
T ss_dssp CCCTTEEHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred ECCCCCCHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf 64899899999987---4999999999999999999999998---87826878789969858988899876875025778
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 34678864211379998756689000004999950368879999999991999999837999998624111125887899
Q 006545 434 EISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLAGD 513 (641)
Q Consensus 434 ~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~s~~sDVwSlGviL~ElltG~~Pf~~~~~~~~~~~~~~~~~~ld~~~~~ 513 (641)
..... ....+||+.|||||++.+..|+.++||||+||++|+|+||++||...+............ ..
T Consensus 186 ~~~~~------~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~-------~~ 252 (311)
T 4aw0_A 186 SKQAR------ANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLE-------YD 252 (311)
T ss_dssp TTCCC------BCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTC-------CC
T ss_pred CCCCC------CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC-------CC
T ss_conf 77654------367556803079989768999968989989999999974989989979999999997199-------99
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 98235999999999985113399999479
Q 006545 514 WPFVQAEQLANLAMRCCEMSRKSRPELGK 542 (641)
Q Consensus 514 ~p~~~~~~l~~Li~~Cl~~dP~~RPs~~e 542 (641)
+|...+..+.+|+.+||..||.+||++.+
T Consensus 253 ~p~~~s~~~~dli~~lL~~dp~~R~t~~e 281 (311)
T 4aw0_A 253 FPEKFFPKARDLVEKLLVLDATKRLGCEE 281 (311)
T ss_dssp CCTTCCHHHHHHHHHHSCSSGGGSTTSGG
T ss_pred CCCCCCHHHHHHHHHHCCCCHHHCCCHHH
T ss_conf 99656999999999976289757809679
Done!