BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006546
(641 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q80XQ2|TBCD5_MOUSE TBC1 domain family member 5 OS=Mus musculus GN=Tbc1d5 PE=1 SV=2
Length = 815
Score = 106 bits (265), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 107/216 (49%), Gaps = 40/216 (18%)
Query: 81 QTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLT 140
Q + S++ E+ +L+ +++EHDAY MF LM ++ S F H G T
Sbjct: 222 QAFLHASESAQPSEEMKTLLNPEYLEHDAYAMFSQLMETAEPWFST---FEHDGQKGKET 278
Query: 141 CLLP---------------VIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVL 185
+ P V + + HLL D L+ HL L + PQ +GLRW+R+L
Sbjct: 279 LMAPIPFARPQDLGPTVAIVTKVNQIQDHLLKKHDIELYMHLNRLEIAPQIYGLRWVRLL 338
Query: 186 FGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIR 245
FGREF L DLL++WD +FA DS + +L+ + +M+LYIR
Sbjct: 339 FGREFPLQDLLVVWDALFA-DSLNL--------------------SLVDYVFTAMLLYIR 377
Query: 246 SSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQ 281
+L+++ N TCL L+++P+ ++ +I K L+
Sbjct: 378 DALISS-NYQTCLGLLMHYPIIGDIHSLILKALFLR 412
>sp|Q92609|TBCD5_HUMAN TBC1 domain family member 5 OS=Homo sapiens GN=TBC1D5 PE=1 SV=1
Length = 795
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 105/216 (48%), Gaps = 40/216 (18%)
Query: 81 QTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLT 140
Q + S++ E+ VL+ +++EHDAY +F LM ++ S F H G T
Sbjct: 222 QAFLHASESAQPSEEMKTVLNPEYLEHDAYAVFSQLMETAEPWFST---FEHDGQKGKET 278
Query: 141 CLLP---------------VIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVL 185
+ P V + + HLL D L+ HL L + PQ +GLRW+R+L
Sbjct: 279 LMTPIPFARPQDLGPTIAIVTKVNQIQDHLLKKHDIELYMHLNRLEIAPQIYGLRWVRLL 338
Query: 186 FGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIR 245
FGREF L DLL++WD +FA G G L+ + V+M+LYIR
Sbjct: 339 FGREFPLQDLLVVWDALFAD-------------GLSLG--------LVDYIFVAMLLYIR 377
Query: 246 SSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQ 281
+L+++ N TCL L+++P ++ +I K L+
Sbjct: 378 DALISS-NYQTCLGLLMHYPFIGDVHSLILKALFLR 412
>sp|Q54VM3|TBC5A_DICDI TBC1 domain family member 5 homolog A OS=Dictyostelium discoideum
GN=tbc1d5A PE=1 SV=1
Length = 1173
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/320 (20%), Positives = 133/320 (41%), Gaps = 63/320 (19%)
Query: 1 MHELLAPLLYVLHVDVERLSQVRNEHEDHFTDK-FDGLSFHENDLTYNFDFKKFLDSMED 59
M+E+LAP+LY ++ D + + D F+ K +D + + FD + D D
Sbjct: 516 MNEILAPILYSVYNDSHWFN-----NRDVFSKKNYDKKNKQYEHFDFVFDQQYQQDYYPD 570
Query: 60 ---EIGSHGNSVKVRSVDELDPEIQTIVQLSDAYGAEGELGIVLSE-KFMEHDAYCMFDA 115
+ ++ N+ + +G +G L + ++ EHD+Y +F++
Sbjct: 571 GPIQYPTNSNNFNGAG---------SSGSGGSVSRKDGGIGAFLRDPQYFEHDSYFIFES 621
Query: 116 LM--VGSQGSVSMADFFAHSHADGSLTCL--------------LPVIEASSAMYHLLSVA 159
LM VG + + G L + V++ M+ L
Sbjct: 622 LMTIVGKWFTSPPSSPQPPPRVQGQFKKLYDLSERDASDQAVNIVVVDQCLRMFEDLKFI 681
Query: 160 DSSLHSHLVE-LGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDA 218
+ L+S+L + LG+EP + LRW+R++ + F L LLI+WD IF ++
Sbjct: 682 EPQLYSYLKQDLGIEPHLYSLRWIRIILAQVFPLDSLLILWDSIFKESVTE--------- 732
Query: 219 GSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTK 278
+ + ++M++ I+ ++ ++ + CLQ L ++PV ++ ++
Sbjct: 733 -------------FLPYICLTMLIMIKDQIIE-KDYSECLQVLFHYPVTQDMPMLLNTAY 778
Query: 279 S----LQALALDANLSSSSP 294
S +Q N+ S+P
Sbjct: 779 SVREKIQMAKQQYNIPISTP 798
>sp|Q54TA5|TBC5B_DICDI TBC1 domain family member 5 homolog B OS=Dictyostelium discoideum
GN=tbc1d5B PE=3 SV=1
Length = 1016
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 22/111 (19%)
Query: 155 LLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDT 214
LL D L+ HL L +EPQ + LRW+R+LFGREF D+L IWD +FA + +
Sbjct: 585 LLKQKDFELYQHLDSLDIEPQIYLLRWIRLLFGREFHFDDVLNIWDALFAYGENLI---- 640
Query: 215 EDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFP 265
LI +SM+ YIR LL ++ + L+R+ +P
Sbjct: 641 -----------------LIDYFCISMLTYIREHLLKSD-SIYALKRIYKYP 673
>sp|Q9NVG8|TBC13_HUMAN TBC1 domain family member 13 OS=Homo sapiens GN=TBC1D13 PE=1 SV=3
Length = 400
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 25/131 (19%)
Query: 152 MYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVN 211
+Y L D L+ L E ++PQ+F RWL +L +EF L D++ IWD +FA D+
Sbjct: 291 VYSTLKDKDVELYLKLQEQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDN---- 346
Query: 212 KDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLL-NFPVNINL 270
R + + +M++ IR LL E T RLL ++P+ ++
Sbjct: 347 -----------------RFDFLLLVCCAMLMLIREQLL--EGDFTVNMRLLQDYPIT-DV 386
Query: 271 KKIIGKTKSLQ 281
+I+ K K LQ
Sbjct: 387 CQILQKAKELQ 397
>sp|Q8R3D1|TBC13_MOUSE TBC1 domain family member 13 OS=Mus musculus GN=Tbc1d13 PE=2 SV=1
Length = 400
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 25/131 (19%)
Query: 152 MYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVN 211
+Y L D L+ L E ++PQ+F RWL +L +EF L D++ IWD +FA
Sbjct: 291 VYSTLKDKDVELYLKLQEQSIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFAD------ 344
Query: 212 KDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLL-NFPVNINL 270
G+ F L + +M++ IR LL E T RLL ++P+ ++
Sbjct: 345 -------GNRFDFL--------LLVCCAMLILIREQLL--EGDFTVNMRLLQDYPIT-DV 386
Query: 271 KKIIGKTKSLQ 281
+I+ K K LQ
Sbjct: 387 CQILQKAKELQ 397
>sp|Q9URY3|YLOH_SCHPO TBC domain-containing protein C1952.17c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC1952.17c PE=4
SV=4
Length = 619
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 22/191 (11%)
Query: 98 IVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHS---HADGSLTCLLPVIEASSAMYH 154
++ ++ E+ C DA + +Q V + D + + +D + L+ S
Sbjct: 282 VLATDPTYENYYLCECDAFFLFTQMMVQVRDLYEKTLDHDSDHGIHFLM------SKFTE 335
Query: 155 LLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDT 214
L D L +L E + P Y+ RW L +EF L D++ +WD I A D K
Sbjct: 336 RLKKYDYELWENLEEKQIHPTYYSFRWFTCLLSQEFPLPDVIRLWDSIIA-DQMKARLFG 394
Query: 215 EDDAGSGFGILSSPRGA--LIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKK 272
++D G GA + S+++ +R S+L A + +LL N+++ K
Sbjct: 395 KNDDGFN--------GAYDFLMDFCCSILIELRESILERNFADSI--KLLQAHFNVDMPK 444
Query: 273 IIGKTKSLQAL 283
++ T LQ L
Sbjct: 445 LLNLTFELQHL 455
>sp|P07751|SPTN1_CHICK Spectrin alpha chain, non-erythrocytic 1 OS=Gallus gallus GN=SPTAN1
PE=1 SV=3
Length = 2477
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 265 PVNINLKKIIGKTKSLQALALDANLSSSSPPFSGVYNQNNPMVVRGSSLPSESISPRTPL 324
P NI L K++ K + QA +A L +++ GV NP++ RG+ SE + + L
Sbjct: 1582 PTNIQLSKLLSKHQKHQAF--EAELHANADRIRGVIEMGNPLIERGACAGSED-AVKARL 1638
Query: 325 NVVPDSYWE 333
+ D WE
Sbjct: 1639 AALADQ-WE 1646
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 335 KWRDLHKAEEQRHDS-SGKQNQTQKKRWLEKVKLRLSRTESDPTPRTVDNGTKHSRSSIR 393
K RD + ++Q D G+ + +K R+ E+VK R+ E V K +
Sbjct: 704 KGRDKERVKDQEKDQEKGRDKEVEKGRYKERVKDRVKEQEKVRDKEQVKGRDKKRSKDLE 763
Query: 394 RSLLEDLSKELGFEEDSEKDGILEVSTEKDQ 424
+ +D KEL + + +D LE EKDQ
Sbjct: 764 KCREKDQDKELEKDREKNQDKELEKGREKDQ 794
>sp|P38676|GUX1B_NEUCR Exoglucanase 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A
/ CBS 708.71 / DSM 1257 / FGSC 987) GN=cbh-1 PE=3 SV=1
Length = 516
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 538 SGKFQWFWKFGRNSAGEETSEKGGVATETKISANNESNQSNSKGASSNDGSCKSSSSSKG 597
S KF +F ++SAG+ K K+ N++SN G S CKS ++ G
Sbjct: 294 SSKFTVVTQFIKDSAGDLAEIKAFYVQNGKVIENSQSNVDGVSGNSITQSFCKSQKTAFG 353
Query: 598 ETVDQNVMGTLKNLGQSMLEHIQVTFSF 625
+ D N G LK +G+++ + + + S
Sbjct: 354 DIDDFNKKGGLKQMGKALAQAMVLVMSI 381
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 233,560,197
Number of Sequences: 539616
Number of extensions: 9896204
Number of successful extensions: 40512
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 645
Number of HSP's that attempted gapping in prelim test: 34289
Number of HSP's gapped (non-prelim): 3682
length of query: 641
length of database: 191,569,459
effective HSP length: 124
effective length of query: 517
effective length of database: 124,657,075
effective search space: 64447707775
effective search space used: 64447707775
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)