Query 006546
Match_columns 641
No_of_seqs 178 out of 1260
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 00:51:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1091 Ypt/Rab-specific GTPas 100.0 1.1E-75 2.5E-80 632.4 19.1 437 1-636 152-602 (625)
2 KOG4567 GTPase-activating prot 100.0 1.5E-32 3.3E-37 283.0 13.5 169 83-284 181-363 (370)
3 KOG1092 Ypt/Rab-specific GTPas 99.9 3.4E-25 7.3E-30 235.6 12.5 151 104-289 327-481 (484)
4 KOG1093 Predicted protein kina 99.8 6E-20 1.3E-24 201.2 11.3 180 80-314 421-605 (725)
5 PF00566 RabGAP-TBC: Rab-GTPas 99.8 5E-18 1.1E-22 161.3 11.6 133 81-249 78-214 (214)
6 smart00164 TBC Domain in Tre-2 99.7 1.3E-17 2.9E-22 158.7 10.0 119 76-207 75-198 (199)
7 COG5210 GTPase-activating prot 99.7 7.2E-17 1.6E-21 176.9 13.1 153 77-264 286-442 (496)
8 KOG2058 Ypt/Rab GTPase activat 99.7 2.4E-16 5.3E-21 170.8 14.3 151 80-266 223-384 (436)
9 KOG2197 Ypt/Rab-specific GTPas 99.6 5E-16 1.1E-20 170.9 10.8 164 91-289 281-449 (488)
10 KOG2223 Uncharacterized conser 99.6 2.8E-15 6.2E-20 160.8 13.6 166 80-281 380-555 (586)
11 KOG2224 Uncharacterized conser 99.6 2.9E-15 6.2E-20 160.5 9.8 169 87-282 535-730 (781)
12 KOG4436 Predicted GTPase activ 99.3 1.1E-11 2.4E-16 140.7 13.3 157 75-266 642-808 (948)
13 KOG2222 Uncharacterized conser 99.3 2.8E-12 6.2E-17 139.1 6.6 173 74-281 238-418 (848)
14 KOG3636 Uncharacterized conser 99.2 5.3E-11 1.2E-15 128.8 9.6 161 99-301 123-288 (669)
15 KOG1102 Rab6 GTPase activator 99.1 1.9E-10 4.1E-15 124.3 7.4 143 87-266 224-369 (397)
16 KOG2595 Predicted GTPase activ 99.0 1.9E-09 4E-14 114.1 11.2 160 86-282 137-301 (395)
17 KOG4347 GTPase-activating prot 98.9 4.3E-09 9.2E-14 118.2 10.6 153 76-265 263-425 (671)
18 KOG2221 PDZ-domain interacting 97.9 6.3E-06 1.4E-10 83.8 2.5 90 80-182 168-267 (267)
19 KOG4436 Predicted GTPase activ 95.1 0.057 1.2E-06 63.6 8.0 165 80-280 260-439 (948)
20 PF14961 BROMI: Broad-minded p 93.9 0.34 7.5E-06 59.5 10.8 121 138-282 1155-1278(1296)
21 KOG2224 Uncharacterized conser 90.8 0.049 1.1E-06 60.5 -1.2 30 91-120 567-600 (781)
22 KOG1648 Uncharacterized conser 82.6 0.19 4E-06 57.0 -2.5 145 91-275 647-796 (813)
23 KOG4567 GTPase-activating prot 78.1 0.84 1.8E-05 49.5 0.7 18 1-18 194-211 (370)
24 KOG2801 Probable Rab-GAPs [Int 68.2 27 0.00059 38.0 8.9 105 154-282 185-294 (559)
25 PRK14888 KEOPS complex Pcc1-li 24.7 88 0.0019 26.2 3.2 27 604-630 30-56 (59)
26 PF07056 DUF1335: Protein of u 20.6 64 0.0014 31.1 1.8 21 598-618 39-59 (131)
No 1
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-75 Score=632.39 Aligned_cols=437 Identities=48% Similarity=0.717 Sum_probs=369.2
Q ss_pred CcchhhhHHhhhhhhHHHHHHHHHhhhhhcccccCCCCccCCCcccccccccccccccccccccCCccccccCCcCChHH
Q 006546 1 MHELLAPLLYVLHVDVERLSQVRNEHEDHFTDKFDGLSFHENDLTYNFDFKKFLDSMEDEIGSHGNSVKVRSVDELDPEI 80 (641)
Q Consensus 1 MhEllApllyvl~~d~~~l~~v~~~~e~~f~~~fd~~~~~~~~~~~~~~~~k~~~~~e~~~~~~~~~~~~~~ldeLdp~~ 80 (641)
||||||||+||||+|.+.|.|+++. +||.++|+|.+++|+|+|.|+.+- .|++
T Consensus 152 MHElLAPl~fVl~~D~q~l~h~se~-------~~~~l~f~E~d~iy~~~y~k~d~d--------------------n~~l 204 (625)
T KOG1091|consen 152 MHELLAPLLFVLHVDNQALLHVSES-------LFDKLGFEERDVIYNFLYLKTDLD--------------------NTEL 204 (625)
T ss_pred hhhhhhhhhhheehhHHHHHHHHHh-------hhhhcCcchhhhhhhHHHHhhhcc--------------------chhH
Confidence 9999999999999999999999998 899999999999999999988522 2889
Q ss_pred HHHHHHHhhhcccccHHHhhccCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccCcHHHHHHHHHHHHHHHHhc
Q 006546 81 QTIVQLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVAD 160 (641)
Q Consensus 81 q~lVlLs~aYG~e~em~~LLs~~~~E~DAFwcF~~LM~~~~~~y~M~DfFs~s~~~gS~tGLpplIe~~~~L~~LLk~~D 160 (641)
+..|.|+++|||+.+.++.+..++||+|||++|..+|.. ++++++++..++++|..+|
T Consensus 205 qs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~----------------------l~~v~e~~~~~~~lL~~~D 262 (625)
T KOG1091|consen 205 QSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPG----------------------LPPVFEANFAQYHLLAKVD 262 (625)
T ss_pred HHHHHhhhccccccCcceecCcccCCcCcccchhhhccc----------------------chhHHHHhhhhhhhhhhcc
Confidence 999999999999999999999999999999999999863 4678888888999999999
Q ss_pred HHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHH-HHhhcCCCCCCCCCCCCCCCCccccCCCchhHHHHHHHH
Q 006546 161 SSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWD-EIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVS 239 (641)
Q Consensus 161 PeLysHL~klgIePqlFalRWLrlLFsREFpLedVLrLWD-~IFA~~~s~~~~~~e~~~ds~FrI~~spr~~fIlyIaVA 239 (641)
+.||.||.++||+||+|++||+|+||+||||+.++|.||| ++|.+. |++.|+.||+||
T Consensus 263 ~~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~---------------------pr~~Lv~~m~Vs 321 (625)
T KOG1091|consen 263 KSLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDS---------------------PRGILVACMFVS 321 (625)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccC---------------------chHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 777654 567899999999
Q ss_pred HHHHhhhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccCCCceeecccCCCCCCCC
Q 006546 240 MMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALALDANLSSSSPPFSGVYNQNNPMVVRGSSLPSESIS 319 (641)
Q Consensus 240 MLL~lRdqLLesDf~secLqlLqnyP~~iDVdkLI~kA~~L~~~~l~t~~ssps~~~~~~~~~~~s~~~R~~s~~~~~~~ 319 (641)
||+++|+.||.+++ .+||++|+|||.++|++++|++|+.|+. +|.|+...++|.++. +.+
T Consensus 322 mLL~IRd~Llss~~-~tcL~~Lm~yP~~~Dv~~~iekAl~l~~----------------~~~K~n~~p~~~~~n---sf~ 381 (625)
T KOG1091|consen 322 MLLYIRDSLLSSEY-QTCLQYLMNYPEIIDVDKFIEKALHLQK----------------LFPKSNAKPARDNSN---SFS 381 (625)
T ss_pred HHHHHHHHHHHhcc-hhHHHHHhcCCCcCcHHHHHHHHHHHHH----------------hcccccccccCCCcc---ccc
Confidence 99999999999999 6799999999999999999999999998 455666778898875 677
Q ss_pred CCCCCCcCCCcchhhhhhhhhHHHhhhccCCCCCC-cccccchhhhhhccccccccCCCCcccCCCCccCc-chhhhhHH
Q 006546 320 PRTPLNVVPDSYWEGKWRDLHKAEEQRHDSSGKQN-QTQKKRWLEKVKLRLSRTESDPTPRTVDNGTKHSR-SSIRRSLL 397 (641)
Q Consensus 320 p~~p~~~~~~sywe~~wr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~ll 397 (641)
+.+|+.+-|++||+.+||+++++.++....+..+. +.||+.|.. ..+.|+++||++ |++..| +++.|.++
T Consensus 382 ~~s~~~isp~~~w~~k~r~~~~~nse~~~~~~sps~~~k~~~~~~---~~~~r~~~D~S~-----~~~~~k~~~~~R~~~ 453 (625)
T KOG1091|consen 382 DLSPVGISPCSYWEGKWRVLPRANSEESSMKISPSPIIKKKPVLQ---MKLARLTIDPSR-----GSSEAKLSSSPRVLL 453 (625)
T ss_pred ccccccCChhhhcccccCCCccccccccccccCCCcccccCcHHH---HHHHHhhcCCcc-----ccccccCCcchhhhh
Confidence 88999999999999999999999988877665554 445888886 344599999999 777666 88999999
Q ss_pred HHHHHhhCCcccccccccccccccCCCCchhhhhhhcccccccccccCCCcccCCCCCCCCCcccccCCCCCCCCCCCCC
Q 006546 398 EDLSKELGFEEDSEKDGILEVSTEKDQPSVEAEVQRQDSVNREFACTSDERYLTGNAGSEESSSIFSDPASPVSGANDNE 477 (641)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~e~s~~~~~~~s~~~~~~~~~ 477 (641)
++++++|+. |.+|...+|
T Consensus 454 ~~~~~~l~t-----------------------------------------------------------p~~~d~~~~--- 471 (625)
T KOG1091|consen 454 LDLKEQLST-----------------------------------------------------------PLSPDEDAN--- 471 (625)
T ss_pred cccccccCC-----------------------------------------------------------CCCcchhhh---
Confidence 999888871 333322222
Q ss_pred Cccccccccc-CCccccccccCCCCC---CCCCCCCCCCCCCcccCCCCCCcccccchhhhhccccchhhhhhcCCCCcc
Q 006546 478 NDSEKSSVAS-NSSVDENDRQSHTMP---ESPPLPVSQTPDDIVKDSQSNNDSLEKSQTVRKVLSGKFQWFWKFGRNSAG 553 (641)
Q Consensus 478 ~~s~~s~~~s-~~~~~~~~~~~~~~~---~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~qw~~k~gr~~~~ 553 (641)
+.+.|.+ +.|.-+.+..++++. .+.||+|+.++.++ .-....|+|+++|+||||||+||+..+
T Consensus 472 ---~~s~v~~~q~s~lq~~l~~kd~~~~~~~~~l~i~~~~~~~----------~~~~~~~~k~~~~~~q~~~~l~~~l~~ 538 (625)
T KOG1091|consen 472 ---EASTVSSIQPSKLQEDLSTKDQVTSQVNGPLEISRTLDGK----------SVLITKEDKLLSGLFQRLRKLGRTLSA 538 (625)
T ss_pred ---hhhhhhhcchHHHHhhhcccchhhhhcCCcccccccCCcc----------hhhhHHHHHhhhHHHHHHHHhCchhcc
Confidence 4555555 888888888887665 48999999987760 111222889999999999999999999
Q ss_pred ccccccCCccccccccccccccCCCCCCCCCCCCCCCCCCC-CCCcccchhhHHhHHhhhHHHHhhHHHHHHHHhhhhc-
Q 006546 554 EETSEKGGVATETKISANNESNQSNSKGASSNDGSCKSSSS-SKGETVDQNVMGTLKNLGQSMLEHIQVTFSFCTLICM- 631 (641)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~tl~n~g~sml~~i~~ie~~~~~~~~- 631 (641)
|||++...| |++..+ ...++.||+.+.|+||+||+|++||++||+||+|..+
T Consensus 539 ~etk~~~~~--------------------------~s~~~~~~~s~~~~~~~~~~~~~~gq~~~~h~~~~~~~~~~~p~~ 592 (625)
T KOG1091|consen 539 EETKKLNTG--------------------------CSPPKHASSSGDTDQGSATTLKNLGQSMLEHIEMIESVFEQEPIE 592 (625)
T ss_pred cccccCCCC--------------------------CCCCCcccccCCcccccccccccCchhHHHHHHHHHHhhccCccc
Confidence 998222111 222221 2223789999999999999999999999999999973
Q ss_pred -----ccccc
Q 006546 632 -----FENTS 636 (641)
Q Consensus 632 -----~~~~~ 636 (641)
++|++
T Consensus 593 ~~~~~~d~l~ 602 (625)
T KOG1091|consen 593 VPAGLSDNLS 602 (625)
T ss_pred ccccccCCCC
Confidence 56654
No 2
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=99.98 E-value=1.5e-32 Score=283.02 Aligned_cols=169 Identities=25% Similarity=0.492 Sum_probs=152.7
Q ss_pred HHHHHhhhcccccHHHhhcc--------------CCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccCcHHHHHH
Q 006546 83 IVQLSDAYGAEGELGIVLSE--------------KFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEA 148 (641)
Q Consensus 83 lVlLs~aYG~e~em~~LLs~--------------~~~E~DAFwcF~~LM~~~~~~y~M~DfFs~s~~~gS~tGLpplIe~ 148 (641)
+..|++..||.|||..+|.| .|+|+|||+||+.||..++ |+|....+ .|..||...|
T Consensus 181 yAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseir------Dnf~k~LD-dS~~GI~~~M-- 251 (370)
T KOG4567|consen 181 YAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIR------DNFIKTLD-DSVGGIHFLM-- 251 (370)
T ss_pred HhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHH------HHHHHhcc-ccccchHHHH--
Confidence 35668888999999987654 3679999999999999874 99998875 6788876544
Q ss_pred HHHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCC
Q 006546 149 SSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSP 228 (641)
Q Consensus 149 ~~~L~~LLk~~DPeLysHL~klgIePqlFalRWLrlLFsREFpLedVLrLWD~IFA~~~s~~~~~~e~~~ds~FrI~~sp 228 (641)
.+|..+|+.+|.+||.||++.+|.|++|+|||+.+||++|||+++|++|||.+|++...
T Consensus 252 -sr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-------------------- 310 (370)
T KOG4567|consen 252 -SRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-------------------- 310 (370)
T ss_pred -HHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh--------------------
Confidence 78999999999999999999999999999999999999999999999999999998763
Q ss_pred chhHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q 006546 229 RGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALA 284 (641)
Q Consensus 229 r~~fIlyIaVAMLL~lRdqLLesDf~secLqlLqnyP~~iDVdkLI~kA~~L~~~~ 284 (641)
++|+++||+|||+..|+.||+.|| +.||++||+||+ .|+.+++..|..|+...
T Consensus 311 -fd~Ll~iCcsmlil~Re~il~~DF-~~nmkLLQ~yp~-tdi~~~l~~A~~Lr~~k 363 (370)
T KOG4567|consen 311 -FDFLLYICCSMLILVRERILEGDF-TVNMKLLQNYPT-TDISKMLAVADSLRDKK 363 (370)
T ss_pred -hHHHHHHHHHHHHHHHHHHHhcch-HHHHHHHhcCCC-CCHHHHHHHHHHHHhcc
Confidence 489999999999999999999999 899999999996 99999999999999643
No 3
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.4e-25 Score=235.56 Aligned_cols=151 Identities=26% Similarity=0.426 Sum_probs=135.6
Q ss_pred CchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccCcHHHHHHHHHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHH
Q 006546 104 FMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLR 183 (641)
Q Consensus 104 ~~E~DAFwcF~~LM~~~~~~y~M~DfFs~s~~~gS~tGLpplIe~~~~L~~LLk~~DPeLysHL~klgIePqlFalRWLr 183 (641)
-+|+|||||+.+|+.+++ |+|... ++||...+ ..|..|++.+|+.||+||++.||+-..|||||+.
T Consensus 327 ~iEADsyWClskLLD~IQ------DNYtfa-----QpGIq~kV---~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmN 392 (484)
T KOG1092|consen 327 DIEADAYWCLSKLLDGIQ------DNYTFA-----QPGIQRKV---KNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMN 392 (484)
T ss_pred hhhhhHHHHHHHHHHHhh------hhhhhc-----ChhHHHHH---HHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHH
Confidence 359999999999999975 888764 56765444 7899999999999999999999999999999999
Q ss_pred HhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCCchhHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHC
Q 006546 184 VLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLN 263 (641)
Q Consensus 184 lLFsREFpLedVLrLWD~IFA~~~s~~~~~~e~~~ds~FrI~~spr~~fIlyIaVAMLL~lRdqLLesDf~secLqlLqn 263 (641)
|||.||||+..++||||++++++.. | .+|++|||+|.|+..|++|++.|| .+.|.+|||
T Consensus 393 cLLmRE~pl~~~iRlWDTY~aE~dg-------------f-------~~FhvYvcAAFL~kW~~eL~e~DF-Q~~ilfLQn 451 (484)
T KOG1092|consen 393 CLLMREFPLRCTIRLWDTYLAEPDG-------------F-------NEFHVYVCAAFLLKWSSELMENDF-QELILFLQN 451 (484)
T ss_pred HHHHhhccchhHHHHHHHhhcCccc-------------h-------HHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHhc
Confidence 9999999999999999999999764 2 279999999999999999999998 899999999
Q ss_pred CCCC----CCHHHHHHHHHHHHHHHhhcCC
Q 006546 264 FPVN----INLKKIIGKTKSLQALALDANL 289 (641)
Q Consensus 264 yP~~----iDVdkLI~kA~~L~~~~l~t~~ 289 (641)
+|+. .+|+.|+..|+.++....+++.
T Consensus 452 lPT~~W~d~eIellLseA~~~k~~f~da~~ 481 (484)
T KOG1092|consen 452 LPTHNWSDREIELLLSEAFRLKSVFSDAPN 481 (484)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHccchh
Confidence 9974 6899999999999998766653
No 4
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.81 E-value=6e-20 Score=201.16 Aligned_cols=180 Identities=21% Similarity=0.418 Sum_probs=153.9
Q ss_pred HHHHHHHHhhhcccccHHHhhcc----CC-chHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccCcHHHHHHHHHHHH
Q 006546 80 IQTIVQLSDAYGAEGELGIVLSE----KF-MEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYH 154 (641)
Q Consensus 80 ~q~lVlLs~aYG~e~em~~LLs~----~~-~E~DAFwcF~~LM~~~~~~y~M~DfFs~s~~~gS~tGLpplIe~~~~L~~ 154 (641)
++..|--++-|.|.||+--|..| .+ -|+-||-||..|+-+..+ .||-.+. ++ ++.+....|++
T Consensus 421 Lkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kycq-----~fflkdn---s~----vikeyLs~f~~ 488 (725)
T KOG1093|consen 421 LKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYCQ-----HFFLKDN---SN----VIKEYLSMFSQ 488 (725)
T ss_pred HHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHHH-----HHHhhcC---ch----hHHHHHHHHHH
Confidence 45555556666789998766444 22 399999999999988652 5676542 22 23456678999
Q ss_pred HHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCCchhHHH
Q 006546 155 LLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIA 234 (641)
Q Consensus 155 LLk~~DPeLysHL~klgIePqlFalRWLrlLFsREFpLedVLrLWD~IFA~~~s~~~~~~e~~~ds~FrI~~spr~~fIl 234 (641)
++..+||+|++||..+|+.|++||++||.++|+.+||++.++.|||.+|..+++ |.+
T Consensus 489 l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~S-----------------------Fpl 545 (725)
T KOG1093|consen 489 LLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHSS-----------------------FPL 545 (725)
T ss_pred HHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCCc-----------------------cHH
Confidence 999999999999999999999999999999999999999999999999998874 789
Q ss_pred HHHHHHHHHhhhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccCCCceeecccCCC
Q 006546 235 AMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQALALDANLSSSSPPFSGVYNQNNPMVVRGSSLP 314 (641)
Q Consensus 235 yIaVAMLL~lRdqLLesDf~secLqlLqnyP~~iDVdkLI~kA~~L~~~~l~t~~ssps~~~~~~~~~~~s~~~R~~s~~ 314 (641)
+++|||+.+.|+.||.+.| ++|+.++.+.| ++|++.+|+....|++ .+| +|++.|+|..|
T Consensus 546 mi~vAil~~lR~~LLa~nf-ne~illf~d~p-dldId~~Ires~~l~e-------~tP-----------~sit~rqha~~ 605 (725)
T KOG1093|consen 546 MIGVAILIQLRDPLLACNF-NECILLFSDLP-DLDIDVCIRESYHLME-------TTP-----------KSITPRQHANP 605 (725)
T ss_pred HHHHHHHHHhhhhhhhCCc-hhheeeeccCC-cccHHHHHHHHhhhhh-------CCC-----------CCCChHHhcCC
Confidence 9999999999999999999 89999999999 6999999999999999 477 88999999865
No 5
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=99.75 E-value=5e-18 Score=161.33 Aligned_cols=133 Identities=23% Similarity=0.452 Sum_probs=103.1
Q ss_pred HHHHHHHhhhcccccHHHhhcc----CCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccCcHHHHHHHHHHHHHH
Q 006546 81 QTIVQLSDAYGAEGELGIVLSE----KFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLL 156 (641)
Q Consensus 81 q~lVlLs~aYG~e~em~~LLs~----~~~E~DAFwcF~~LM~~~~~~y~M~DfFs~s~~~gS~tGLpplIe~~~~L~~LL 156 (641)
..+....+..||.|||..+..+ ...|++|||||.++|... ..++|.... +.+...+..+..+|
T Consensus 78 ~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~~~-----~~~~~~~~~--------~~~~~~~~~~~~ll 144 (214)
T PF00566_consen 78 SAYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLNYY-----LPDFFQPNF--------KGLQKILKIFEQLL 144 (214)
T ss_dssp HHHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHTHH-----GGGGTSTTH--------HHHHHHHHHHHHHH
T ss_pred HHhccccccccccchhhhhhhhhhhhcccccchhccccchhccc-----ccccccccc--------cccchhhhhHHHHH
Confidence 3444444445899999887543 346899999999999322 356776542 22334456789999
Q ss_pred HHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCCchhHHHHH
Q 006546 157 SVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAM 236 (641)
Q Consensus 157 k~~DPeLysHL~klgIePqlFalRWLrlLFsREFpLedVLrLWD~IFA~~~s~~~~~~e~~~ds~FrI~~spr~~fIlyI 236 (641)
+.++|+||+||.+.|+++..|+++|++++|++.+|++.+++||| ++..+.. -++.++
T Consensus 145 ~~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD-~l~~g~~----------------------~~l~~~ 201 (214)
T PF00566_consen 145 KKHDPELYNHLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWD-FLLEGYK----------------------FFLFFI 201 (214)
T ss_dssp HHHTHHHHHHHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHH-HHHHCTT----------------------HHHHHH
T ss_pred HhhhhhhhhhhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHH-HHHcCCC----------------------cHHHHH
Confidence 99999999999999999999999999999999999999999999 6656553 248899
Q ss_pred HHHHHHHhhhhhc
Q 006546 237 AVSMMLYIRSSLL 249 (641)
Q Consensus 237 aVAMLL~lRdqLL 249 (641)
|+|++...|++||
T Consensus 202 ~lail~~~~~~il 214 (214)
T PF00566_consen 202 ALAILKYLRDQIL 214 (214)
T ss_dssp HHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999986
No 6
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=99.72 E-value=1.3e-17 Score=158.71 Aligned_cols=119 Identities=26% Similarity=0.445 Sum_probs=94.7
Q ss_pred CChHHHHHHHHHhhhcccccHHHhhcc---CC-chHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccCcHHHHHHHHH
Q 006546 76 LDPEIQTIVQLSDAYGAEGELGIVLSE---KF-MEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSA 151 (641)
Q Consensus 76 Ldp~~q~lVlLs~aYG~e~em~~LLs~---~~-~E~DAFwcF~~LM~~~~~~y~M~DfFs~s~~~gS~tGLpplIe~~~~ 151 (641)
|...+..+....+..||+|||..++.. .+ .|++|||||.+||.... ..+|..+ .+.+...+..
T Consensus 75 L~~IL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~-----~~~~~~~--------~~~~~~~~~~ 141 (199)
T smart00164 75 LRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYG-----PNFYLPD--------MSGLQLDLLQ 141 (199)
T ss_pred HHHHHHHHHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC-----cccCCCC--------hHHHHHHHHH
Confidence 333344445555555999999987543 34 49999999999999864 2445432 2333445577
Q ss_pred HHHHHHHhcHHHHHHHHH-cCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCC
Q 006546 152 MYHLLSVADSSLHSHLVE-LGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDS 207 (641)
Q Consensus 152 L~~LLk~~DPeLysHL~k-lgIePqlFalRWLrlLFsREFpLedVLrLWD~IFA~~~ 207 (641)
+..+|+..+|+||+||.+ +|+.+.+|+++|+++||+++||++.++||||.||++|.
T Consensus 142 ~~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG~ 198 (199)
T smart00164 142 LDRLVKEYDPDLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGS 198 (199)
T ss_pred HHHHHHHHCHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Confidence 899999999999999996 99999999999999999999999999999999999874
No 7
>COG5210 GTPase-activating protein [General function prediction only]
Probab=99.70 E-value=7.2e-17 Score=176.88 Aligned_cols=153 Identities=22% Similarity=0.359 Sum_probs=120.1
Q ss_pred ChHHHHHHHHHhhhcccccHHHhhcc---CCc-hHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccCcHHHHHHHHHH
Q 006546 77 DPEIQTIVQLSDAYGAEGELGIVLSE---KFM-EHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAM 152 (641)
Q Consensus 77 dp~~q~lVlLs~aYG~e~em~~LLs~---~~~-E~DAFwcF~~LM~~~~~~y~M~DfFs~s~~~gS~tGLpplIe~~~~L 152 (641)
...+..+..-.++.||+|||.+++.+ .+. |++|||||++||... .+..+|.... .|+ ......+
T Consensus 286 ~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee~AF~~l~~L~~~~----~l~~~~~~~~-----~G~---~~~~~~l 353 (496)
T COG5210 286 RRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNY----GLPGYFLKNL-----SGL---HRDLKVL 353 (496)
T ss_pred HHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhHHHHHHHHHHHHhc----cchhhcccCC-----cHH---HHHHHHH
Confidence 33344444444555999999998765 455 999999999999953 2567887653 354 3445678
Q ss_pred HHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCCchhH
Q 006546 153 YHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGAL 232 (641)
Q Consensus 153 ~~LLk~~DPeLysHL~klgIePqlFalRWLrlLFsREFpLedVLrLWD~IFA~~~s~~~~~~e~~~ds~FrI~~spr~~f 232 (641)
..+++..+|+||+||...++....|++|||+++|.++||++.++||||.+|+.+.. +
T Consensus 354 ~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~-----------------------~ 410 (496)
T COG5210 354 DDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSS-----------------------M 410 (496)
T ss_pred HHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccH-----------------------H
Confidence 78999999999999999999999999999999999999999999999999999863 5
Q ss_pred HHHHHHHHHHHhhhhhccCCCHHHHHHHHHCC
Q 006546 233 IAAMAVSMMLYIRSSLLATENATTCLQRLLNF 264 (641)
Q Consensus 233 IlyIaVAMLL~lRdqLLesDf~secLqlLqny 264 (641)
+.-+++|++...|..|+..+.......++..+
T Consensus 411 l~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 442 (496)
T COG5210 411 LFQLALAILKLLRDKLLKLDSDELLDLLLKQL 442 (496)
T ss_pred HHHHHHHHHHhhhhhhhccCchhHHHHHHHhh
Confidence 66778888888899988887633333334333
No 8
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=2.4e-16 Score=170.76 Aligned_cols=151 Identities=23% Similarity=0.312 Sum_probs=125.6
Q ss_pred HHHHHHHHhhh-------cccccHHHhh---ccCCc-hHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccCcHHHHHH
Q 006546 80 IQTIVQLSDAY-------GAEGELGIVL---SEKFM-EHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEA 148 (641)
Q Consensus 80 ~q~lVlLs~aY-------G~e~em~~LL---s~~~~-E~DAFwcF~~LM~~~~~~y~M~DfFs~s~~~gS~tGLpplIe~ 148 (641)
++.|-++.-|| ||||||..|. ..-+- |++|||||..+..... ..||...+. |++.+
T Consensus 223 ~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~l-----p~Yyt~nL~-g~qvD------- 289 (436)
T KOG2058|consen 223 RQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYL-----PRYYTPNLI-GSQVD------- 289 (436)
T ss_pred HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhc-----hhhcCchhh-hhhcc-------
Confidence 45555555555 9999998763 33444 9999999999999974 468887653 44433
Q ss_pred HHHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCC
Q 006546 149 SSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSP 228 (641)
Q Consensus 149 ~~~L~~LLk~~DPeLysHL~klgIePqlFalRWLrlLFsREFpLedVLrLWD~IFA~~~s~~~~~~e~~~ds~FrI~~sp 228 (641)
...|..+|+...|+|+.||..+++.-.+|++.||+|+|...+|.+.+|||||++|.+|..
T Consensus 290 Q~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGsk-------------------- 349 (436)
T KOG2058|consen 290 QKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSK-------------------- 349 (436)
T ss_pred HHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccH--------------------
Confidence 256899999999999999999999999999999999999999999999999999999873
Q ss_pred chhHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHCCCC
Q 006546 229 RGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPV 266 (641)
Q Consensus 229 r~~fIlyIaVAMLL~lRdqLLesDf~secLqlLqnyP~ 266 (641)
+++-+|+|++...+++||..+...++++.|..+..
T Consensus 350 ---vlfr~Alai~k~~ee~il~~~~~~~i~~~~~~~~~ 384 (436)
T KOG2058|consen 350 ---VLFRVALAILKKHEEEILKEDSSKEILRVLPDLTK 384 (436)
T ss_pred ---HHHHHHHHHHHHhHHHHhcCCCHHHHHHHHHHHHH
Confidence 67779999999999999999887777777776653
No 9
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=99.64 E-value=5e-16 Score=170.92 Aligned_cols=164 Identities=18% Similarity=0.261 Sum_probs=135.4
Q ss_pred cccccHHHhhccCCc----hHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccCcHHHHHHHHHHHHHHHHhcHHHHHH
Q 006546 91 GAEGELGIVLSEKFM----EHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSH 166 (641)
Q Consensus 91 G~e~em~~LLs~~~~----E~DAFwcF~~LM~~~~~~y~M~DfFs~s~~~gS~tGLpplIe~~~~L~~LLk~~DPeLysH 166 (641)
||+|||++++++.++ |++|||||+.||.++. .+|..+. .|+. .+...+..+++.+||.||.|
T Consensus 281 GY~QgmSDllspi~~v~~de~~aFwcFv~fm~~~~------~nF~~d~-----~~~~---~Ql~~~~~li~~~dp~l~~h 346 (488)
T KOG2197|consen 281 GYCQGMSDLLSPILIVMEDEVEAFWCFVGFMDRLR------HNFRIDQ-----SGMQ---TQLAQLSSLIQELDPRLYQH 346 (488)
T ss_pred ccccCchhhcCcceeeecCchHHHHHHHHHHHHHh------hcCcccc-----ccHH---HHhhhhhhhccccCHHHHhh
Confidence 899999999998644 8999999999999964 4665542 3432 33456679999999999999
Q ss_pred HHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCCchhHHHHHHHHHHHHhhh
Q 006546 167 LVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRS 246 (641)
Q Consensus 167 L~klgIePqlFalRWLrlLFsREFpLedVLrLWD~IFA~~~s~~~~~~e~~~ds~FrI~~spr~~fIlyIaVAMLL~lRd 246 (641)
|++++..-.+|++||+.+.|.|||.++++++||+++|+..... .|++|++.|||-..+.
T Consensus 347 Le~~d~~~~~f~fr~l~v~frrEf~~ed~l~LWEvlw~~~~~~---------------------~f~~~~~~~~l~~~~~ 405 (488)
T KOG2197|consen 347 LEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLWEVLWTDLPSP---------------------HFHLYVAPAILNKDPQ 405 (488)
T ss_pred ccccCCCccceeeehhhcccccccccccHHHHHHHHHhcCccc---------------------hHHHHHHHhhhhcchH
Confidence 9999999999999999999999999999999999999987642 6999999999999888
Q ss_pred hhccCCC-HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHhhcCC
Q 006546 247 SLLATEN-ATTCLQRLLNFPVNINLKKIIGKTKSLQALALDANL 289 (641)
Q Consensus 247 qLLesDf-~secLqlLqnyP~~iDVdkLI~kA~~L~~~~l~t~~ 289 (641)
.|+.... ..+.+..+.....+.|+..++..|..+.........
T Consensus 406 ~l~~~~~~~~e~l~~i~~~~~~~d~~~~~~~A~~~~~~~k~~~~ 449 (488)
T KOG2197|consen 406 TLMEQGKSFNEVLKHVNLLSEKADVLWVLVRAEALERQNKQMEE 449 (488)
T ss_pred HHHhcCccchhHHhhcccccccchhhhHHHHHHHHHHHHHhccc
Confidence 8888643 256666566667778999999999988876554433
No 10
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.62 E-value=2.8e-15 Score=160.80 Aligned_cols=166 Identities=19% Similarity=0.311 Sum_probs=142.1
Q ss_pred HHHHHHHHhhh-------cccccHHH---hhccCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccCcHHHHHHH
Q 006546 80 IQTIVQLSDAY-------GAEGELGI---VLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEAS 149 (641)
Q Consensus 80 ~q~lVlLs~aY-------G~e~em~~---LLs~~~~E~DAFwcF~~LM~~~~~~y~M~DfFs~s~~~gS~tGLpplIe~~ 149 (641)
-+.|..|.-|| ||.|||++ ||...+.++|||.||.+|+++..+ ..||..+. +-+...+
T Consensus 380 ~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnmd~~~AFiafANLLdkp~q----~Aff~~d~--------s~m~~yf 447 (586)
T KOG2223|consen 380 HDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNMDLADAFIAFANLLDKPCQ----QAFFRVDH--------SSMLSYF 447 (586)
T ss_pred HHHHHHHhhhheeecCccccccchHHHHHHHHHcCCcHHHHHHHHHHhccHHH----HHHHhcCc--------HHHHHHH
Confidence 46788888888 89999876 477889999999999999999742 35887653 1133345
Q ss_pred HHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCCc
Q 006546 150 SAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPR 229 (641)
Q Consensus 150 ~~L~~LLk~~DPeLysHL~klgIePqlFalRWLrlLFsREFpLedVLrLWD~IFA~~~s~~~~~~e~~~ds~FrI~~spr 229 (641)
..|...|+...|+||.||.++.+.|.+|.+.|+++||+..+|++...||||+++-++.
T Consensus 448 ~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdge---------------------- 505 (586)
T KOG2223|consen 448 ATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGE---------------------- 505 (586)
T ss_pred HHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecch----------------------
Confidence 7788999999999999999999999999999999999999999999999999999886
Q ss_pred hhHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q 006546 230 GALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQ 281 (641)
Q Consensus 230 ~~fIlyIaVAMLL~lRdqLLesDf~secLqlLqnyP~~iDVdkLI~kA~~L~ 281 (641)
+|++-.++++|..+.+.||.+|| ..|.++|.++|..+..+.+...-..++
T Consensus 506 -eFlfr~~lgIlklyepkLl~mDf-~~~~qfLtklp~dL~~eelF~~i~~~~ 555 (586)
T KOG2223|consen 506 -EFLFRTALGILKLYEPKLLVMDF-IHVAQFLTKLPEDLTPEELFMHIAYIQ 555 (586)
T ss_pred -HHHHHHHHHHHHHccchHhhhhH-HHHHHHHHhCcccCCHHHHHHHHHHHh
Confidence 58889999999999999999998 899999999998877777665444333
No 11
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.59 E-value=2.9e-15 Score=160.52 Aligned_cols=169 Identities=21% Similarity=0.331 Sum_probs=125.1
Q ss_pred HhhhcccccHHHhhccC----CchHHHHHHHHHHHhcccCCCC-------------------Cc-ccccCCCCCCcccCc
Q 006546 87 SDAYGAEGELGIVLSEK----FMEHDAYCMFDALMVGSQGSVS-------------------MA-DFFAHSHADGSLTCL 142 (641)
Q Consensus 87 s~aYG~e~em~~LLs~~----~~E~DAFwcF~~LM~~~~~~y~-------------------M~-DfFs~s~~~gS~tGL 142 (641)
+++.||.|||++||.+- ..|.++||||+.||.++..-++ |. .||.-++.+. .
T Consensus 535 n~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgmsdlvapilaevldesdtfwcfvglmqna~fv~sp~d~---d- 610 (781)
T KOG2224|consen 535 NPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQNAFFVCSPRDE---D- 610 (781)
T ss_pred cccccccccchhhcchhhhhhccccchhhhhhhhhccchhhhhhHHHhhhccccchhhhhhhhcceEEEeCCcch---h-
Confidence 44558999999887663 3467788888888876432110 11 2554443211 1
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHcCCC--cchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCC
Q 006546 143 LPVIEASSAMYHLLSVADSSLHSHLVELGVE--PQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGS 220 (641)
Q Consensus 143 pplIe~~~~L~~LLk~~DPeLysHL~klgIe--PqlFalRWLrlLFsREFpLedVLrLWD~IFA~~~s~~~~~~e~~~ds 220 (641)
+-+.+..+.+||+...|..|+||+.+|-+ -.+||-||+++.|.||||-..++|||++-|+.-.. +
T Consensus 611 --md~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfkref~ea~airiweacwa~y~t----------d- 677 (781)
T KOG2224|consen 611 --MDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFKREFPEAEAIRIWEACWAHYLT----------D- 677 (781)
T ss_pred --hhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhhH----------H-
Confidence 12234568899999999999999988744 36899999999999999999999999999998653 1
Q ss_pred CccccCCCchhHHHHHHHHHHHHhhhhhccCCCH-HHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q 006546 221 GFGILSSPRGALIAAMAVSMMLYIRSSLLATENA-TTCLQRLLNFPVNINLKKIIGKTKSLQA 282 (641)
Q Consensus 221 ~FrI~~spr~~fIlyIaVAMLL~lRdqLLesDf~-secLqlLqnyP~~iDVdkLI~kA~~L~~ 282 (641)
-|++|||+|++-.+-+..++...+ .+.|..+-++....|-+-|+++|..|.+
T Consensus 678 ----------yfhlficlaiiaiy~ddvi~q~l~~demllhf~nlam~mdgelilrkar~ll~ 730 (781)
T KOG2224|consen 678 ----------YFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNLAMHMDGELILRKARGLLH 730 (781)
T ss_pred ----------HHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhhhhhcCchhhHHHHHHHHH
Confidence 499999999999999999987653 3434444455556888999999998865
No 12
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.32 E-value=1.1e-11 Score=140.66 Aligned_cols=157 Identities=22% Similarity=0.313 Sum_probs=134.3
Q ss_pred cCChHHHHHHHHHhhh-------cccccHHHh---hccCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccCcHH
Q 006546 75 ELDPEIQTIVQLSDAY-------GAEGELGIV---LSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLP 144 (641)
Q Consensus 75 eLdp~~q~lVlLs~aY-------G~e~em~~L---Ls~~~~E~DAFwcF~~LM~~~~~~y~M~DfFs~s~~~gS~tGLpp 144 (641)
-|.+....+.++.+|| |||+|++.+ |...+.|+.||-+...||...+ |..-|.+++ ..
T Consensus 642 qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~~e~~afellk~LM~~r~----~r~qy~pdm--------~~ 709 (948)
T KOG4436|consen 642 QLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHMSEENAFELLKFLMFDRG----MRKQYRPDM--------KK 709 (948)
T ss_pred hccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhcchhhHHHHHHHHHHHHh----hHhhhchHH--------HH
Confidence 3666678899999999 799999885 6678889999999999999874 666676653 22
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccc
Q 006546 145 VIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGI 224 (641)
Q Consensus 145 lIe~~~~L~~LLk~~DPeLysHL~klgIePqlFalRWLrlLFsREFpLedVLrLWD~IFA~~~s~~~~~~e~~~ds~FrI 224 (641)
+-.++..+.++++-+.+.||+||.+..|.|.+||.+|++++|+-.||+.-|-||.|.||..+.
T Consensus 710 lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~lGfvarvfd~~flq~t----------------- 772 (948)
T KOG4436|consen 710 LQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPLGFVARVFDLIFLQGT----------------- 772 (948)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcchHHHHHHHHHHhhcc-----------------
Confidence 223456688999999999999999999999999999999999999999999999999999876
Q ss_pred cCCCchhHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHCCCC
Q 006546 225 LSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPV 266 (641)
Q Consensus 225 ~~spr~~fIlyIaVAMLL~lRdqLLesDf~secLqlLqnyP~ 266 (641)
+.+..+++++|--.+..|++.|...+++.++++.-+
T Consensus 773 ------evifK~a~~llsv~k~~l~e~dn~e~i~d~~k~~~p 808 (948)
T KOG4436|consen 773 ------EVIFKVALSLLSVHKQLLLEKDNFEEIVDFLKTTLP 808 (948)
T ss_pred ------chhhhhHHHHHHhhHHHHHhhhhHHHHHHHHHHhhh
Confidence 356778999999999999999988999999998543
No 13
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=99.29 E-value=2.8e-12 Score=139.07 Aligned_cols=173 Identities=20% Similarity=0.346 Sum_probs=138.5
Q ss_pred CcCChHHHHHHHHHhhhcccccHHHh---hccCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccCcHHHHHHHH
Q 006546 74 DELDPEIQTIVQLSDAYGAEGELGIV---LSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASS 150 (641)
Q Consensus 74 deLdp~~q~lVlLs~aYG~e~em~~L---Ls~~~~E~DAFwcF~~LM~~~~~~y~M~DfFs~s~~~gS~tGLpplIe~~~ 150 (641)
..|.+.++.+..|.+-.||+||||.+ |....-|+.||||..+++..+.+ +.||+.... |+.. .-+
T Consensus 238 ~~lrrilk~ia~ifpdigycqg~gviva~lllf~~ee~afwmmaaiiedilp----~nfysqtll-----giqa---der 305 (848)
T KOG2222|consen 238 EALRRILKCIAFIFPDIGYCQGMGVIVACLLLFCEEENAFWMMAAIIEDILP----ANFYSQTLL-----GIQA---DER 305 (848)
T ss_pred HHHHHHHhhheeecCCcccccCccHHHHHHHHHhcchhHHHHHHHHHHHhcC----chhhhhhHh-----ccch---hHH
Confidence 34566677778888889999999975 33445578899999999999864 568876542 4422 124
Q ss_pred HHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCCch
Q 006546 151 AMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRG 230 (641)
Q Consensus 151 ~L~~LLk~~DPeLysHL~klgIePqlFalRWLrlLFsREFpLedVLrLWD~IFA~~~s~~~~~~e~~~ds~FrI~~spr~ 230 (641)
.+.+|++.+-|.|-..|.++.|+-.+..+.||++||+..|....++||||.||..+..
T Consensus 306 v~~~li~~~l~~ldeal~~~dielslitl~w~ltlf~nv~~~killriwd~~fy~g~i---------------------- 363 (848)
T KOG2222|consen 306 VMHHLIACHLPDLDEALEDHDIELSLITLHWFLTLFANVFHMKILLRIWDFFFYEGGI---------------------- 363 (848)
T ss_pred HHHHHHHhccCchhHHHHhccceeeehHHHHHHHHHHHHHHHHHHHHHHHhheecCcc----------------------
Confidence 4678999999999999999999999999999999999999999999999999998853
Q ss_pred hHHHHHHHHHHHHhhhhhccC----CCHHHHHHHHHCCCC-CCCHHHHHHHHHHHH
Q 006546 231 ALIAAMAVSMMLYIRSSLLAT----ENATTCLQRLLNFPV-NINLKKIIGKTKSLQ 281 (641)
Q Consensus 231 ~fIlyIaVAMLL~lRdqLLes----Df~secLqlLqnyP~-~iDVdkLI~kA~~L~ 281 (641)
-++-+.++||......|.+. +...++...|..+|. ..||+++++.|..+-
T Consensus 364 -~ifql~i~ilkmkeqdi~~iaettensa~if~als~ip~~vtdve~l~~~~~~~~ 418 (848)
T KOG2222|consen 364 -NIFQLIIGILKMKEQDIKEIAETTENSADIFNALSDIPAEVTDVEKLFEQAGEFE 418 (848)
T ss_pred -hhHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHhCCchhhhHHHHHHHHhhcc
Confidence 24456788888777777654 444688888999996 589999999997654
No 14
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=99.19 E-value=5.3e-11 Score=128.82 Aligned_cols=161 Identities=16% Similarity=0.240 Sum_probs=126.7
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccCcHHHHHHHHHHHHHHHHhcHHHHHHHHHcCCCcchhh
Q 006546 99 VLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFG 178 (641)
Q Consensus 99 LLs~~~~E~DAFwcF~~LM~~~~~~y~M~DfFs~s~~~gS~tGLpplIe~~~~L~~LLk~~DPeLysHL~klgIePqlFa 178 (641)
|+......+|.|.||.++|++.- +. +-+..|-+ +..|.-||+.+||+|++||..+.|.|.+|+
T Consensus 123 l~~L~lprsd~fN~F~ai~~kYI----------Pk--dcrpkg~~-----Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~ 185 (669)
T KOG3636|consen 123 LLLLNLPRSDEFNVFFAITTKYI----------PK--DCRPKGQI-----FHLFRLLLQYHDPELCNHLDTKKITPDMYT 185 (669)
T ss_pred HHHhcCCcchhhhhhHhhhhccc----------CC--CCCCCCcc-----chHHHHHHHhcCHHHhhhhhccccCchHHH
Confidence 44556778999999999998632 21 11223321 245778999999999999999999999999
Q ss_pred hHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCCchhHHHHHHHHHHHHhhhhhccC--CCHHH
Q 006546 179 LRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLAT--ENATT 256 (641)
Q Consensus 179 lRWLrlLFsREFpLedVLrLWD~IFA~~~s~~~~~~e~~~ds~FrI~~spr~~fIlyIaVAMLL~lRdqLLes--Df~se 256 (641)
+.||-.||+...+.+.+.-|||.+|...+.+ |++|+++-+|+.-|++||.. +-..+
T Consensus 186 lnWf~sLFas~~Stev~~a~WdlY~qqaDPF----------------------~vffLaliiLiNake~ILq~~sdsKEe 243 (669)
T KOG3636|consen 186 LNWFASLFASSMSTEVCHALWDLYIQQADPF----------------------LVFFLALIILINAKEEILQVKSDSKEE 243 (669)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCce----------------------ehHHHHHHHhcccHHHHhhhccccHHH
Confidence 9999999999999999999999999988753 78889999999999999986 33479
Q ss_pred HHHHHHCCCCC---CCHHHHHHHHHHHHHHHhhcCCCCCCCCCccccc
Q 006546 257 CLQRLLNFPVN---INLKKIIGKTKSLQALALDANLSSSSPPFSGVYN 301 (641)
Q Consensus 257 cLqlLqnyP~~---iDVdkLI~kA~~L~~~~l~t~~ssps~~~~~~~~ 301 (641)
++++|.++|.. .||..+...|.... ..|+.|.......-+||
T Consensus 244 ~ikfLenmp~~L~~eDvpDffsLAqyY~---~KTP~sfrkD~~~~lfG 288 (669)
T KOG3636|consen 244 AIKFLENMPAQLSVEDVPDFFSLAQYYS---DKTPESFRKDFHYILFG 288 (669)
T ss_pred HHHHHHcCchhcccccchhHHHHHHHHh---hcChHHhhhhhhHhhhc
Confidence 99999999964 67777777776544 45555555555555565
No 15
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.07 E-value=1.9e-10 Score=124.30 Aligned_cols=143 Identities=20% Similarity=0.312 Sum_probs=120.6
Q ss_pred HhhhcccccHHHh---hccCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccCcHHHHHHHHHHHHHHHHhcHHH
Q 006546 87 SDAYGAEGELGIV---LSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSL 163 (641)
Q Consensus 87 s~aYG~e~em~~L---Ls~~~~E~DAFwcF~~LM~~~~~~y~M~DfFs~s~~~gS~tGLpplIe~~~~L~~LLk~~DPeL 163 (641)
++..||+++|+.+ +...+.|++||++++++|...+ .++|..+ ..|++. ....+..+++..-|.+
T Consensus 224 ~~~~gy~q~m~~~a~~ll~~~~ee~af~~lv~l~~~~~-----~~~~~~~-----~~~l~~---~~~~~~~l~~~~~p~~ 290 (397)
T KOG1102|consen 224 DPEVGYCQGMSSIAAPLLLYLPEEEAFPLLVKLMKNYG-----LDLLSPG-----FSGLQR---SFRQLQRLLKELIPKL 290 (397)
T ss_pred CCCcccccchhhHhhhhhccCchhhhhhhhhhhhhccc-----hhccccc-----CCchhh---hHHHHHHHHHHhChhh
Confidence 3334899999876 4456779999999999999853 4666443 335433 3467889999999999
Q ss_pred HHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCCchhHHHHHHHHHHHH
Q 006546 164 HSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLY 243 (641)
Q Consensus 164 ysHL~klgIePqlFalRWLrlLFsREFpLedVLrLWD~IFA~~~s~~~~~~e~~~ds~FrI~~spr~~fIlyIaVAMLL~ 243 (641)
+.|+...++...+|+.+|++++|+..|+++.+++|||.+|..+. ..+..++++++.+
T Consensus 291 ~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g~-----------------------~i~~~~~~~l~~~ 347 (397)
T KOG1102|consen 291 LDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVEGV-----------------------SILFRFSLALLKH 347 (397)
T ss_pred hhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHhch-----------------------HHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999983 3678899999999
Q ss_pred hhhhhccCCCHHHHHHHHHCCCC
Q 006546 244 IRSSLLATENATTCLQRLLNFPV 266 (641)
Q Consensus 244 lRdqLLesDf~secLqlLqnyP~ 266 (641)
..+.++..++ +..|+.|.+.+.
T Consensus 348 ~~~~~~~~~~-e~~~~~l~~~~~ 369 (397)
T KOG1102|consen 348 KADDLLDLDF-ESLLSYLRVDLP 369 (397)
T ss_pred hhHHHhhccH-HHHHHHHhcccH
Confidence 9999999997 899999988653
No 16
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.00 E-value=1.9e-09 Score=114.11 Aligned_cols=160 Identities=16% Similarity=0.217 Sum_probs=121.6
Q ss_pred HHhhhcccccHHHhhc---cCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccCcHHHHHHHHHHHHHHHHhcHH
Q 006546 86 LSDAYGAEGELGIVLS---EKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSS 162 (641)
Q Consensus 86 Ls~aYG~e~em~~LLs---~~~~E~DAFwcF~~LM~~~~~~y~M~DfFs~s~~~gS~tGLpplIe~~~~L~~LLk~~DPe 162 (641)
-+|...|-||.+++.. .-+-|.+|+-+.+.|-.. .++||--++++ ...++...+..+|+..||+
T Consensus 137 ~yP~L~YYQGyHDI~~tfLLv~gE~~Al~l~E~L~~~-----~lrdfM~~Tld--------~t~~qL~~i~~iIk~~nP~ 203 (395)
T KOG2595|consen 137 KYPTLNYYQGYHDIVVTFLLVVGELEALSLMEELSTL-----HLRDFMLPTLD--------FTVRQLRLISPIIKEVNPE 203 (395)
T ss_pred HCCCcchhcchhHHHHHHHHhhhhHhhhHHHHHHHHH-----HHHHHHHHHHH--------HHHHHHHHHHHHHhhcChH
Confidence 3444479999998632 334466666666655532 23333333321 1234557789999999999
Q ss_pred HHHHHHHcCCCcchhhhHHHHHhhcccCC-hhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCCchhHHHHHHHHHH
Q 006546 163 LHSHLVELGVEPQYFGLRWLRVLFGREFS-LGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMM 241 (641)
Q Consensus 163 LysHL~klgIePqlFalRWLrlLFsREFp-LedVLrLWD~IFA~~~s~~~~~~e~~~ds~FrI~~spr~~fIlyIaVAML 241 (641)
||+.|....+.+ +|++.|++++|++.+. +..++|++|++++...- +.+|+|++++
T Consensus 204 Ly~~l~~aevgt-lFaLsWllTWFaH~L~~~~~vvRlfD~Flas~pl-----------------------~piyv~A~vv 259 (395)
T KOG2595|consen 204 LYQFLQSAEVGT-LFALSWLLTWFAHNLKDIRIVVRLFDFFLASHPL-----------------------LPIYVYAAVV 259 (395)
T ss_pred HHHHHHhhcccc-eehhhHHHHHHhhcchhHHHHHHHHHHHHhcCcc-----------------------hhHHHHHHHh
Confidence 999999999985 9999999999999995 99999999999998652 6789999999
Q ss_pred HHhhhhhccCCCH-HHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q 006546 242 LYIRSSLLATENA-TTCLQRLLNFPVNINLKKIIGKTKSLQA 282 (641)
Q Consensus 242 L~lRdqLLesDf~-secLqlLqnyP~~iDVdkLI~kA~~L~~ 282 (641)
++.|+.|++++-. .-.-.+|..+|..+.++.+|..+..+..
T Consensus 260 L~r~~eIl~~~~dms~~H~lLs~iPq~lp~d~lik~s~~~i~ 301 (395)
T KOG2595|consen 260 LYRRSEILKCDCDMSLLHGLLSTIPQDLPYDTLIKESVLLIT 301 (395)
T ss_pred hhhHHHHHHHHhhhHHHHHHHHhCccccCHHHHHHHHHHHHh
Confidence 9999999998542 2333456789988999999999987765
No 17
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=98.92 E-value=4.3e-09 Score=118.21 Aligned_cols=153 Identities=22% Similarity=0.309 Sum_probs=128.6
Q ss_pred CChHHHHHHHHHhhh-------cccccHHHhhccC---CchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccCcHHH
Q 006546 76 LDPEIQTIVQLSDAY-------GAEGELGIVLSEK---FMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPV 145 (641)
Q Consensus 76 Ldp~~q~lVlLs~aY-------G~e~em~~LLs~~---~~E~DAFwcF~~LM~~~~~~y~M~DfFs~s~~~gS~tGLppl 145 (641)
.+|.+.++.....|| ||+|-|.++.+.- ..|+.||||++++.... +.+||+.... |. +
T Consensus 263 ~e~gi~aLR~vL~Aya~~Np~vGYcQaMNIV~s~lll~~~EEeafwll~~lce~~-----ip~yys~~vv-----Gt--l 330 (671)
T KOG4347|consen 263 SEPGIAALRRVLTAYAWSNPEVGYCQAMNIVGSELLLFCKEEEAFWLLSKLCEIY-----IPDYYSKTVV-----GT--L 330 (671)
T ss_pred CCCchhhHHHHHHhhhccCCchhHHHHHHHHHHhhhhhhccchHHHHHHHHHHHh-----cccccchhhh-----hh--H
Confidence 566678888888888 8999999997754 44999999999999986 3588887642 21 1
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCcccc
Q 006546 146 IEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGIL 225 (641)
Q Consensus 146 Ie~~~~L~~LLk~~DPeLysHL~klgIePqlFalRWLrlLFsREFpLedVLrLWD~IFA~~~s~~~~~~e~~~ds~FrI~ 225 (641)
+ ....+..+++..-|.||.|+..+| .-.+..+.||++||-..+|++.-++|-|.+|-.|..
T Consensus 331 i-DQ~vfe~lve~~lP~l~~~~~~l~-~l~~Vsl~WFlslFls~m~le~a~~ilD~FF~eG~r----------------- 391 (671)
T KOG4347|consen 331 I-DQSVFEELVEDTLPVLGEHLAVLG-QLSTVSLSWFLSLFLSLMPLEYAVRILDCFFYEGPR----------------- 391 (671)
T ss_pred H-HHHHHHHHHHHhhhHHHHHhhhhc-ccceEeeHHHHHHHHHHcchHHHHHHHhhhhhcccH-----------------
Confidence 2 224588999999999999999999 778999999999999999999999999999999873
Q ss_pred CCCchhHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHCCC
Q 006546 226 SSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFP 265 (641)
Q Consensus 226 ~spr~~fIlyIaVAMLL~lRdqLLesDf~secLqlLqnyP 265 (641)
.++-|++||+....+.|+.+....+.|..|.||-
T Consensus 392 ------vlFqiaLail~~N~~~il~~~dDge~~~vl~~y~ 425 (671)
T KOG4347|consen 392 ------VLFQIALAILKQNAERILSATDDGEAMMVLGNYF 425 (671)
T ss_pred ------HHHHHHHHHHHhhHHHhcccCCchHHHHHHHHHH
Confidence 5778999999999999999855578898888763
No 18
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=6.3e-06 Score=83.77 Aligned_cols=90 Identities=19% Similarity=0.287 Sum_probs=73.8
Q ss_pred HHHHHHHHhhh-------ccccc---HHHhhccCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccCcHHHHHHH
Q 006546 80 IQTIVQLSDAY-------GAEGE---LGIVLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEAS 149 (641)
Q Consensus 80 ~q~lVlLs~aY-------G~e~e---m~~LLs~~~~E~DAFwcF~~LM~~~~~~y~M~DfFs~s~~~gS~tGLpplIe~~ 149 (641)
.+.++.+.+|| ||||+ +..+|.+.+-+.||||||+.+..+.. .++|+.+.. .+...-
T Consensus 168 kqelfr~lka~ti~~pe~g~cq~qapiaa~llmhmp~rdaf~~~vqicekyl-----qgy~~sgle--------aiq~dg 234 (267)
T KOG2221|consen 168 KQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHMPARDAFWCFVQICEKYL-----QGYYSSGLE--------AIQNDG 234 (267)
T ss_pred hHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhcccHHHHHHHHHHHHHHHc-----ccccccchh--------hhhccc
Confidence 47788888888 77776 66788899999999999999999863 578876532 222223
Q ss_pred HHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHH
Q 006546 150 SAMYHLLSVADSSLHSHLVELGVEPQYFGLRWL 182 (641)
Q Consensus 150 ~~L~~LLk~~DPeLysHL~klgIePqlFalRWL 182 (641)
..|..||+..+|.-|.||...+++|.+|..-||
T Consensus 235 ~il~~Llkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 235 GILEGLLKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred HHHHHHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence 568899999999999999999999999999996
No 19
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=95.14 E-value=0.057 Score=63.61 Aligned_cols=165 Identities=12% Similarity=0.039 Sum_probs=116.1
Q ss_pred HHHHHHHHhhh-------cccccHHH---hhccCCchHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccCcHHHHHHH
Q 006546 80 IQTIVQLSDAY-------GAEGELGI---VLSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEAS 149 (641)
Q Consensus 80 ~q~lVlLs~aY-------G~e~em~~---LLs~~~~E~DAFwcF~~LM~~~~~~y~M~DfFs~s~~~gS~tGLpplIe~~ 149 (641)
+.-+++..++| ||++|-.. ++-..+.++.+|+.++.+|.. |++...|.+.+. ++-..+
T Consensus 260 ~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~~~E~assv~~~lm~~----~rl~~l~kpe~~--------~l~~~~ 327 (948)
T KOG4436|consen 260 QDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQMPVEEASSVKVQLMIL----YRLRELSKPEME--------PLGLCM 327 (948)
T ss_pred HHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcCcHHHHHHHHHHHHHh----hcccccCCcccc--------hhHHHH
Confidence 56667777777 56777443 355678899999999999997 457778877643 112223
Q ss_pred HHHHHHHHHhcH-HHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCC
Q 006546 150 SAMYHLLSVADS-SLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSP 228 (641)
Q Consensus 150 ~~L~~LLk~~DP-eLysHL~klgIePqlFalRWLrlLFsREFpLedVLrLWD~IFA~~~s~~~~~~e~~~ds~FrI~~sp 228 (641)
-.+....+-.-| .|+.|+.+..+....|+--|+++.|.-.||+.-.-++-|.+.+.+-
T Consensus 328 ~q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt~Pi~~a~r~~~~f~~egl--------------------- 386 (948)
T KOG4436|consen 328 FQLECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTTFPIFMAARISDTFSSEGL--------------------- 386 (948)
T ss_pred HhhcccccccchhHHhhcccccCCCccHHHHHHHHHhhcccCchhhccccccccccccH---------------------
Confidence 456677777787 9999999999999999999999999999999988777777776653
Q ss_pred chhHHHHHHHHHH-HHhhhhhccCCCHHHHHHHHHC-CCCC--CCHHHHHHHHHHH
Q 006546 229 RGALIAAMAVSMM-LYIRSSLLATENATTCLQRLLN-FPVN--INLKKIIGKTKSL 280 (641)
Q Consensus 229 r~~fIlyIaVAML-L~lRdqLLesDf~secLqlLqn-yP~~--iDVdkLI~kA~~L 280 (641)
.++..+.+|++ ...+-.+...|+ .+.++.+++ .+.. -+..++...|...
T Consensus 387 --lk~fr~~ia~~~~~~d~~~~s~D~-EG~~~~~qr~~s~~vggtp~k~~t~a~q~ 439 (948)
T KOG4436|consen 387 --LKRFRDSIAYLHQLRDIELESLDM-EGMLSYFQRNRSNTVGGTPDKLRTAAWQV 439 (948)
T ss_pred --HHHHhhhHHHHHHHhhhhhhccCc-cccccchhhccccccCCCCchHHHHHHHH
Confidence 34557788888 444445666676 565565653 2321 3445555555443
No 20
>PF14961 BROMI: Broad-minded protein
Probab=93.89 E-value=0.34 Score=59.52 Aligned_cols=121 Identities=15% Similarity=0.172 Sum_probs=90.2
Q ss_pred cccCcHHHHHH-HHHHHHHHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCC
Q 006546 138 SLTCLLPVIEA-SSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTED 216 (641)
Q Consensus 138 S~tGLpplIe~-~~~L~~LLk~~DPeLysHL~klgIePqlFalRWLrlLFsREFpLedVLrLWD~IFA~~~s~~~~~~e~ 216 (641)
...||+|+.-- +..++.+|+.--|.+|.-|.-.|..|...|.||+.-+|=--|++.++...-=..+.-|.
T Consensus 1155 ~~s~i~p~~~~~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~--------- 1225 (1296)
T PF14961_consen 1155 AESGIHPVYFCSCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGP--------- 1225 (1296)
T ss_pred hhcCCCchhhhHHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCc---------
Confidence 35688876433 34588999999999999999999999999999999999999999986654444333333
Q ss_pred CCCCCccccCCCchhHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHCC-CC-CCCHHHHHHHHHHHHH
Q 006546 217 DAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNF-PV-NINLKKIIGKTKSLQA 282 (641)
Q Consensus 217 ~~ds~FrI~~spr~~fIlyIaVAMLL~lRdqLLesDf~secLqlLqny-P~-~iDVdkLI~kA~~L~~ 282 (641)
+|-.|+|||++.+.+.+||...- +.-|+.+++- |- ...+..-+..-..|..
T Consensus 1226 --------------dyqvY~~VailkHlq~~ilq~~q-~q~L~~flke~~l~gF~~~~~~~yM~~Le~ 1278 (1296)
T PF14961_consen 1226 --------------DYQVYICVAILKHLQPEILQHTQ-TQDLQVFLKEEALRGFRVSDYLEYMENLEQ 1278 (1296)
T ss_pred --------------cceeehhHHHHHHhhHHHHHhhh-hchHHHHhhhccccceeHHhHHHHHHHHHH
Confidence 36679999999999999998753 5556666653 32 2556555555555544
No 21
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=90.81 E-value=0.049 Score=60.51 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=24.8
Q ss_pred cccccHHHhhccC----CchHHHHHHHHHHHhcc
Q 006546 91 GAEGELGIVLSEK----FMEHDAYCMFDALMVGS 120 (641)
Q Consensus 91 G~e~em~~LLs~~----~~E~DAFwcF~~LM~~~ 120 (641)
|..|||++|..+. ..|.|+||||+.||...
T Consensus 567 glmqgmsdlvapilaevldesdtfwcfvglmqna 600 (781)
T KOG2224|consen 567 GLMQGMSDLVAPILAEVLDESDTFWCFVGLMQNA 600 (781)
T ss_pred hhhccchhhhhhHHHhhhccccchhhhhhhhcce
Confidence 7789999876554 45899999999999975
No 22
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=82.58 E-value=0.19 Score=56.97 Aligned_cols=145 Identities=21% Similarity=0.344 Sum_probs=86.4
Q ss_pred cccccHHHhhccCCc----hHHHHHHHHHHHhcccCCCCCcccccCCCCCCcccCcHHHHHHHHHHHHHHHHhcHHHHHH
Q 006546 91 GAEGELGIVLSEKFM----EHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSH 166 (641)
Q Consensus 91 G~e~em~~LLs~~~~----E~DAFwcF~~LM~~~~~~y~M~DfFs~s~~~gS~tGLpplIe~~~~L~~LLk~~DPeLysH 166 (641)
||.++|-+|+.+..+ |+-+--||.-+|-.-++ -|..-+ +-..|++. + ++++.+|| |-+-
T Consensus 647 ~~~~~~~dl~~p~~~~~ed~~~~~e~~s~~~~~q~~------~~~q~~--~~~~~l~~-------~-r~~~v~~~-l~s~ 709 (813)
T KOG1648|consen 647 GYTQGMCDLLAPLLVTFEDEALTLECFSLLMLRQRG------KFPQRP--GMSKCLLN-------L-RLIQVVDP-LISD 709 (813)
T ss_pred ccccchhhccCCcCCChhhcccccCCCcHHHHHhcc------cCCCCC--Cccccccc-------c-cchhhhcc-hhcc
Confidence 789999999887543 33445588888876553 333221 11223321 1 25666676 2222
Q ss_pred HHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCCchhHHHHHHHHHHHHhhh
Q 006546 167 LVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRS 246 (641)
Q Consensus 167 L~klgIePqlFalRWLrlLFsREFpLedVLrLWD~IFA~~~s~~~~~~e~~~ds~FrI~~spr~~fIlyIaVAMLL~lRd 246 (641)
+.. -+-..|||+..-|.|+++.+-...+|.+||++.... . + .+|-++++.|. ..+-+
T Consensus 710 id~----~qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~-~---------------~~~~i~~g~~~-~~~~~ 766 (813)
T KOG1648|consen 710 IDY----AQALSFRWFLLDFKRELSYECTYKVWEVIWAAQRLR--I-T---------------DDFAIFFGLAT-TNYHD 766 (813)
T ss_pred hhh----hhhcceeeeccCcccccCCCCcceeeEeeccccccc--c-C---------------cchhhhhhhHH-HhhHH
Confidence 221 244569999999999999999999999999987642 1 1 13444555555 33444
Q ss_pred hhccCCC-HHHHHHHHHCCCCCCCHHHHHH
Q 006546 247 SLLATEN-ATTCLQRLLNFPVNINLKKIIG 275 (641)
Q Consensus 247 qLLesDf-~secLqlLqnyP~~iDVdkLI~ 275 (641)
.++..+| .+..|+++..+.+..|...++.
T Consensus 767 ~~~t~~~~~t~~i~~~~~~~e~~~c~r~~~ 796 (813)
T KOG1648|consen 767 VLITNNFDYTDMIKFFNEMAERHDCSRLLS 796 (813)
T ss_pred HHhhcccchHHHHHHHHHHHhhhhhHHHHh
Confidence 4444433 2676776665555444444443
No 23
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=78.14 E-value=0.84 Score=49.49 Aligned_cols=18 Identities=44% Similarity=0.831 Sum_probs=16.2
Q ss_pred CcchhhhHHhhhhhhHHH
Q 006546 1 MHELLAPLLYVLHVDVER 18 (641)
Q Consensus 1 MhEllApllyvl~~d~~~ 18 (641)
|+||||||-||+..|.+.
T Consensus 194 MNEIlaPiYYVfa~Dpd~ 211 (370)
T KOG4567|consen 194 MNEILAPIYYVFANDPDE 211 (370)
T ss_pred hHHHhhhhheeeccCCch
Confidence 999999999999999743
No 24
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.20 E-value=27 Score=38.05 Aligned_cols=105 Identities=14% Similarity=0.276 Sum_probs=67.5
Q ss_pred HHHHHhcHHHHHHHHHcCCCcchhhhHHHHHhhcccCChhHHHHHHHHHhhcCCCCCCCCCCCCCCCCccccCCCchhHH
Q 006546 154 HLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALI 233 (641)
Q Consensus 154 ~LLk~~DPeLysHL~klgIePqlFalRWLrlLFsREFpLedVLrLWD~IFA~~~s~~~~~~e~~~ds~FrI~~spr~~fI 233 (641)
.+..+.-..-|+.++...-+-....-.|-|-||+ |+|+-.--|++|+++.++.. .+
T Consensus 185 dlvnkycqaahklmvavsedvlqvyadwqrwlfg-elplcyfarvfdvflvegyk-----------------------vl 240 (559)
T KOG2801|consen 185 DLVNKYCQAAHKLMVAVSEDVLQVYADWQRWLFG-ELPLCYFARVFDVFLVEGYK-----------------------VL 240 (559)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhc-cchHHHHHHHhhheeecchH-----------------------HH
Confidence 3444444444444433222222233478887875 89999999999999998863 56
Q ss_pred HHHHHHHHHHhhh----hhccCCC-HHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q 006546 234 AAMAVSMMLYIRS----SLLATEN-ATTCLQRLLNFPVNINLKKIIGKTKSLQA 282 (641)
Q Consensus 234 lyIaVAMLL~lRd----qLLesDf-~secLqlLqnyP~~iDVdkLI~kA~~L~~ 282 (641)
..+++|+|...-. +-|++|. ..++-.+...+......++|+++|..++-
T Consensus 241 yrvalailkffhkvragqplesdsvkqdirtfvrdiaktvspekllekafairl 294 (559)
T KOG2801|consen 241 YRVALAILKFFHKVRAGQPLESDSVKQDIRTFVRDIAKTVSPEKLLEKAFAIRL 294 (559)
T ss_pred HHHHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 6788888865543 4455543 13444455556656889999999988875
No 25
>PRK14888 KEOPS complex Pcc1-like subunit; Provisional
Probab=24.68 E-value=88 Score=26.18 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=24.1
Q ss_pred hHHhHHhhhHHHHhhHHHHHHHHhhhh
Q 006546 604 VMGTLKNLGQSMLEHIQVTFSFCTLIC 630 (641)
Q Consensus 604 ~~~tl~n~g~sml~~i~~ie~~~~~~~ 630 (641)
=+|||+|.---+|.|++|+|.++++-+
T Consensus 30 ~igsl~~TvDD~l~nl~vae~v~~~~~ 56 (59)
T PRK14888 30 KIGTLLNTVDDYLMNLKVAEKVIEALS 56 (59)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 479999999999999999999987643
No 26
>PF07056 DUF1335: Protein of unknown function (DUF1335); InterPro: IPR009766 This family represents a conserved region approximately 130 residues long within a number of proteins of unknown function that seem to be specific to the white spot syndrome virus (WSSV).
Probab=20.58 E-value=64 Score=31.15 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=17.3
Q ss_pred cccchhhHHhHHhhhHHHHhh
Q 006546 598 ETVDQNVMGTLKNLGQSMLEH 618 (641)
Q Consensus 598 ~~~~~~~~~tl~n~g~sml~~ 618 (641)
+-.-.|||.+|||++|-|-+|
T Consensus 39 G~s~~~v~~~L~~me~~l~~~ 59 (131)
T PF07056_consen 39 GFSPRNVTKKLKSMEQNLVKH 59 (131)
T ss_pred CCChHHHHHHHHHHHHHHHHc
Confidence 344568999999999999776
Done!