Query 006546
Match_columns 641
No_of_seqs 177 out of 1260
Neff 4.1
Searched_HMMs 29240
Date Tue Mar 26 18:42:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006546.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2173-2177//hhsearch_pdb/006546hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fkm_A Protein (GYP1P), ORF YO 1.0 1 1 237.7 14.4 194 80-288 117-386 (396)
2 2qfz_A TBC1 domain family memb 1.0 1 1 225.3 16.6 174 80-288 134-340 (345)
3 2qq8_A TBC1 domain family memb 1.0 1 1 221.0 13.8 166 80-281 141-309 (334)
4 3qye_A TBC1 domain family memb 1.0 1 1 210.0 19.3 169 78-281 127-308 (331)
5 3qwl_A TBC1 domain family memb 1.0 1 1 209.0 16.5 148 100-288 143-290 (294)
6 3hzj_A Rabgap1L, RAB GTPase-ac 1.0 1 1 208.2 11.6 166 80-281 102-275 (310)
7 4hl4_A TBC1 domain family memb 1.0 1 1 208.0 14.3 166 80-283 110-288 (292)
8 2l69_A Rossmann 2X3 fold prote 1.0 1 1 12.5 -1.5 12 397-408 117-128 (134)
9 3tg7_A Hexon protein, late pro 1.0 1 1 12.5 -1.4 21 531-551 858-878 (951)
10 2iny_A Hexon protein, late pro 1.0 1 1 12.0 -2.4 12 605-616 873-884 (942)
No 1
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=1.00 E-value=1 Score=237.71 Aligned_cols=194 Identities=18% Similarity=0.312 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHCCCCCHHHHHCC-------CC-------------------------CHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999987542020008875044-------87-------------------------46789999999972214788776
Q 006546 80 IQTIVQLSDAYGAEGELGIVLSE-------KF-------------------------MEHDAYCMFDALMVGSQGSVSMA 127 (641)
Q Consensus 80 ~~~lv~Ls~AYg~e~eL~~LLs~-------~~-------------------------iEaDAFwlF~~LM~~i~~~y~M~ 127 (641)
+..+....+..||+|||+.++.+ .+ +|+||||||++||..++
T Consensus 117 L~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~------ 190 (396)
T 1fkm_A 117 LYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQIT------ 190 (396)
T ss_dssp HHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGG------
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHH------
T ss_conf 99999878997722670899999999998751352111100013422101243200259999999999999899------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 66668887876567089999999999999986299999999849986112357799860456884679999999951499
Q 006546 128 DFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDS 207 (641)
Q Consensus 128 DfFs~s~~~gS~tGLp~lIea~~~L~~LLk~~DPeLysHL~klgIePqlFalRWLllLFsREFpLedvLrIWD~IFA~g~ 207 (641)
++|..++ .| +...+..|..+|+.+||+||+||.++++++.+|++|||++||+|+||++.++||||++|+++.
T Consensus 191 ~~f~~~~-----~~---i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg~ 262 (396)
T 1fkm_A 191 DNYIHGQ-----PG---ILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETS 262 (396)
T ss_dssp GGSSTTC-----HH---HHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHCH-----HH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
T ss_conf 8774168-----99---999999999999997899999999869965889999999998764888899999999997798
Q ss_pred CC-----CCC-----CCCC---CCCCCC---------------------------CCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 88-----777-----8888---889875---------------------------4457980458999999999996622
Q 006546 208 SK-----VNK-----DTED---DAGSGF---------------------------GILSSPRGALIAAMAVSMMLYIRSS 247 (641)
Q Consensus 208 s~-----l~k-----~~e~---~~ds~F---------------------------~I~~spr~~lIlyIaVALLL~iRsq 247 (641)
.. ... .+.. .+...+ .+..++...|+.|+|+|||+.+|++
T Consensus 263 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~AlL~~~r~~ 342 (396)
T 1fkm_A 263 QEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQ 342 (396)
T ss_dssp ------------------------------------------------------------CHHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 52110010000002577554442100125653110233334333344555311000024652778999999999999999
Q ss_pred HCCCCCHHHHHHHHHCCCCC----CCHHHHHHHHHHHHHHHHHCC
Q ss_conf 10489989899999779999----889999999999899984128
Q 006546 248 LLATENATTCLQRLLNFPVN----INLKKIIGKTKSLQALALDAN 288 (641)
Q Consensus 248 LLesDf~secLqlLlnlP~~----iDVekLIekA~sL~~~~l~a~ 288 (641)
||++|| .++|++|+++|.. .|++.||..|..++.....++
T Consensus 343 Ll~~df-~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~~~ 386 (396)
T 1fkm_A 343 LMEMDF-QETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKDAT 386 (396)
T ss_dssp HTTCCH-HHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHCCH-HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH
T ss_conf 974389-99999996699978650249999999999999982147
No 2
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=1.00 E-value=1 Score=225.29 Aligned_cols=174 Identities=20% Similarity=0.272 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHCCCCCHHHHHCCC----------------------------CCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 999999875420200088750448----------------------------7467899999999722147887766666
Q 006546 80 IQTIVQLSDAYGAEGELGIVLSEK----------------------------FMEHDAYCMFDALMVGSQGSVSMADFFA 131 (641)
Q Consensus 80 ~~~lv~Ls~AYg~e~eL~~LLs~~----------------------------~iEaDAFwlF~~LM~~i~~~y~M~DfFs 131 (641)
+..+....+..||+|||+.++.+- +.|+||||||++||..++ ++|.
T Consensus 134 L~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~------~~y~ 207 (345)
T 2qfz_A 134 LFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQ------DNYT 207 (345)
T ss_dssp HHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSG------GGSS
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCCC
T ss_conf 9999987899886667589999999999754302234221003221166666689799999999997263------0565
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 88878765670899999999999999862999999998499861123577998604568846799999999514998877
Q 006546 132 HSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVN 211 (641)
Q Consensus 132 ~s~~~gS~tGLp~lIea~~~L~~LLk~~DPeLysHL~klgIePqlFalRWLllLFsREFpLedvLrIWD~IFA~g~s~l~ 211 (641)
.++ .| +...+..+..+|+.+||+||+||.++++++.+|++|||++||+|+||++.++||||.+|+++...
T Consensus 208 ~~~-----~~---i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~-- 277 (345)
T 2qfz_A 208 FAQ-----PG---IQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGF-- 277 (345)
T ss_dssp TTC-----HH---HHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTT--
T ss_pred CCC-----HH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCH--
T ss_conf 676-----78---99999999999999779999999986996155789999999703498889999989998088871--
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHCCCCC----CCHHHHHHHHHHHHHHHHH
Q ss_conf 788888898754457980458999999999996622104-89989899999779999----8899999999998999841
Q 006546 212 KDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLA-TENATTCLQRLLNFPVN----INLKKIIGKTKSLQALALD 286 (641)
Q Consensus 212 k~~e~~~ds~F~I~~spr~~lIlyIaVALLL~iRsqLLe-sDf~secLqlLlnlP~~----iDVekLIekA~sL~~~~l~ 286 (641)
..|++|+|+|||+.+|++||. .++ .+++.+|+++|.. .|++.||..|..++....+
T Consensus 278 ------------------~~~~~~v~~AiL~~~~~~ll~~~d~-~~il~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~ 338 (345)
T 2qfz_A 278 ------------------SHFHLYVCAAFLVRWRKEILEEKDF-QELLLFLQNLPTAHWDDEDISLLLAEAYRLKFAFAD 338 (345)
T ss_dssp ------------------TTHHHHHHHHHHHHTHHHHHHCCCH-HHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf ------------------3899999999999988999862799-999999970998677553799999999999999975
Q ss_pred CC
Q ss_conf 28
Q 006546 287 AN 288 (641)
Q Consensus 287 a~ 288 (641)
++
T Consensus 339 ~~ 340 (345)
T 2qfz_A 339 AP 340 (345)
T ss_dssp --
T ss_pred HH
T ss_conf 67
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=220.95 Aligned_cols=166 Identities=14% Similarity=0.268 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHCCCCCHHHHHC---CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999998754202000887504---4874678999999997221478877666668887876567089999999999999
Q 006546 80 IQTIVQLSDAYGAEGELGIVLS---EKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLL 156 (641)
Q Consensus 80 ~~~lv~Ls~AYg~e~eL~~LLs---~~~iEaDAFwlF~~LM~~i~~~y~M~DfFs~s~~~gS~tGLp~lIea~~~L~~LL 156 (641)
+..+....+..||+|||+.+.. ..+.|++|||||++||.... +.++|..+. .| +...+..|..+|
T Consensus 141 L~aya~~~p~vgY~QGm~~iaa~lLl~~~E~~aF~~~~~l~~~~~----~~~~~~~~~-----~~---~~~~~~~~~~ll 208 (334)
T 2qq8_A 141 LGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAFSNLLNKPC----QMAFFRVDH-----GL---MLTYFAAFEVFF 208 (334)
T ss_dssp HHHHHHHCTTTCCCTTHHHHHHHHHHHSCHHHHHHHHHHHHTSHH----HHHHHSSCC-----HH---HHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----HHHCCCCCH-----HH---HHHHHHHHHHHH
T ss_conf 999988379878120188999999825989999999999998664----876118882-----89---999999999999
Q ss_pred HHHCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 98629999999984998611235779986045688467999999995149988777888888987544579804589999
Q 006546 157 SVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAM 236 (641)
Q Consensus 157 k~~DPeLysHL~klgIePqlFalRWLllLFsREFpLedvLrIWD~IFA~g~s~l~k~~e~~~ds~F~I~~spr~~lIlyI 236 (641)
+..||+||+||.++++.|.+|++|||++||+++||++.++||||++|+++. .|++++
T Consensus 209 ~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~-----------------------~~l~~v 265 (334)
T 2qq8_A 209 EENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGE-----------------------EFLFRT 265 (334)
T ss_dssp HHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCH-----------------------HHHHHH
T ss_pred HHHCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC-----------------------HHHHHH
T ss_conf 987999999999769995316999999995364989999999999998497-----------------------899999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 999999966221048998989999977999988999999999989
Q 006546 237 AVSMMLYIRSSLLATENATTCLQRLLNFPVNINLKKIIGKTKSLQ 281 (641)
Q Consensus 237 aVALLL~iRsqLLesDf~secLqlLlnlP~~iDVekLIekA~sL~ 281 (641)
|+|||...|+.|++.++ .+++++|+++|..+|++.|+..|..++
T Consensus 266 alaiL~~~~~~Ll~~d~-~~il~~L~~lp~~~d~~~l~~~a~~l~ 309 (334)
T 2qq8_A 266 ALGILKLFEDILTKMDF-IHMAQFLTRLPEDLPAEELFASIATIQ 309 (334)
T ss_dssp HHHHHHHTHHHHHTCCH-HHHHHHHHSCCTTCCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCH-HHHHHHHHHCCCCCCHHHHHHHHHHCC
T ss_conf 99999999999866999-999999986887689999999998733
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=1.00 E-value=1 Score=209.96 Aligned_cols=169 Identities=21% Similarity=0.321 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHH-------CCCCCHHHHHC---CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 6799999987542-------02000887504---4874678999999997221478877666668887876567089999
Q 006546 78 PEIQTIVQLSDAY-------GAEGELGIVLS---EKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIE 147 (641)
Q Consensus 78 p~~~~lv~Ls~AY-------g~e~eL~~LLs---~~~iEaDAFwlF~~LM~~i~~~y~M~DfFs~s~~~gS~tGLp~lIe 147 (641)
+.++.+..++.|| ||+|||+.+.. ..+.|++|||||++||...+ +.++|..++ +.+..
T Consensus 127 ~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~~E~~aF~~l~~l~~~~~----~~~~~~~~~--------~~~~~ 194 (331)
T 3qye_A 127 AGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLMFDMG----LRKQYRPDM--------IILQI 194 (331)
T ss_dssp HHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTSCHHHHHHHHHHHHTTTC----GGGGGSTTC--------HHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CHHCCCCCH--------HHHHH
T ss_conf 118999999999999788765150288999999998019999999999998547----520279970--------99999
Q ss_pred HHHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999998629999999984998611235779986045688467999999995149988777888888987544579
Q 006546 148 ASSAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSS 227 (641)
Q Consensus 148 a~~~L~~LLk~~DPeLysHL~klgIePqlFalRWLllLFsREFpLedvLrIWD~IFA~g~s~l~k~~e~~~ds~F~I~~s 227 (641)
.+..+..+|+.+||+||+||.++++.+.+|++|||+++|+++||++.++||||.+|+++.
T Consensus 195 ~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~-------------------- 254 (331)
T 3qye_A 195 QMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGT-------------------- 254 (331)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCT--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC--------------------
T ss_conf 999999999987789999999849984887899999996640889999999999998796--------------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC---CHHHHHHHHHHHH
Q ss_conf 80458999999999996622104899898999997799998---8999999999989
Q 006546 228 PRGALIAAMAVSMMLYIRSSLLATENATTCLQRLLNFPVNI---NLKKIIGKTKSLQ 281 (641)
Q Consensus 228 pr~~lIlyIaVALLL~iRsqLLesDf~secLqlLlnlP~~i---DVekLIekA~sL~ 281 (641)
.+++++|+|+|...|+.||+.+.+.+++.+|+++++.+ |++.+|+.|..++
T Consensus 255 ---~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l~ 308 (331)
T 3qye_A 255 ---EVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFEMD 308 (331)
T ss_dssp ---THHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf ---999999999999989998669999999999975288777889999999998388
No 5
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=208.97 Aligned_cols=148 Identities=18% Similarity=0.229 Sum_probs=129.5
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCHHHH
Q ss_conf 04487467899999999722147887766666888787656708999999999999998629999999984998611235
Q 006546 100 LSEKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLLSVADSSLHSHLVELGVEPQYFGL 179 (641)
Q Consensus 100 Ls~~~iEaDAFwlF~~LM~~i~~~y~M~DfFs~s~~~gS~tGLp~lIea~~~L~~LLk~~DPeLysHL~klgIePqlFal 179 (641)
|.....|+||||||++||..++ ++|..++ +|+. ..+..+|+.+||+||+||.++|+.+.+|+.
T Consensus 143 l~l~~~E~dAFW~f~~Lm~~l~------~~f~~~~-----~gl~------~~l~~LL~~~dP~L~~HL~~~~i~~~~~~~ 205 (294)
T 3qwl_A 143 EEMVEDSVDCYWITRRFVNQLN------TKYRDSL-----PQLP------KAFEQYLNLEDGRLLTHLRMCSAAPKLPYD 205 (294)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHH------TTTTTTG-----GGHH------HHHHHHHHHHCHHHHHHHHHTTCGGGSCHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHH------HHHCCCH-----HHHH------HHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 9984889999999999999899------7637872-----4799------999999999889999999977997013799
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 77998604568846799999999514998877788888898754457980458999999999996622104899898999
Q 006546 180 RWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAMAVSMMLYIRSSLLATENATTCLQ 259 (641)
Q Consensus 180 RWLllLFsREFpLedvLrIWD~IFA~g~s~l~k~~e~~~ds~F~I~~spr~~lIlyIaVALLL~iRsqLLesDf~secLq 259 (641)
|||+|+|+|+||++.++||||++|+++. .|++++|+|||..+|++||+.++..++++
T Consensus 206 rWfl~lF~~~~p~~~vlRlWD~~~~~~~-----------------------~~l~~valAiL~~~r~~Ll~~~~~~~il~ 262 (294)
T 3qwl_A 206 LWFKRCFAGCLPESSLQRVWDKVVSGSC-----------------------KILVFVAVEILLTFKIKVMALNSAEKITK 262 (294)
T ss_dssp HHHTSTTTTTSCHHHHHHHHHHHHTTCS-----------------------THHHHHHHHHHHHTHHHHHHCCSHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHCCC-----------------------HHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 9999984527998999999999990994-----------------------39999999999999999867998899999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99779999889999999999899984128
Q 006546 260 RLLNFPVNINLKKIIGKTKSLQALALDAN 288 (641)
Q Consensus 260 lLlnlP~~iDVekLIekA~sL~~~~l~a~ 288 (641)
+|+++|. .|++.+|..|..|+....+++
T Consensus 263 ~Lq~lp~-~di~~ll~~A~~l~~~~~~~~ 290 (294)
T 3qwl_A 263 FLENIPQ-DSSDAIVSKAIDLWHKHCGTP 290 (294)
T ss_dssp HHTTCCS-TTHHHHHHHHHHHHHHHHCCC
T ss_pred HHHCCCC-CCHHHHHHHHHHHHHHCCCCC
T ss_conf 9875880-269999999999999738997
No 6
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=208.21 Aligned_cols=166 Identities=16% Similarity=0.316 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHCCCCCHHHHHC---CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999998754202000887504---4874678999999997221478877666668887876567089999999999999
Q 006546 80 IQTIVQLSDAYGAEGELGIVLS---EKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEASSAMYHLL 156 (641)
Q Consensus 80 ~~~lv~Ls~AYg~e~eL~~LLs---~~~iEaDAFwlF~~LM~~i~~~y~M~DfFs~s~~~gS~tGLp~lIea~~~L~~LL 156 (641)
+..+....+..||+|||+.+.. ..+.|++|||||++||... .+.++|..+ .+.+...+..+..+|
T Consensus 102 L~ay~~~~p~igY~QGm~~iaa~lL~~~~e~~aF~~l~~l~~~~----~~~~~~~~~--------~~~~~~~~~~l~~ll 169 (310)
T 3hzj_A 102 CKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYDY----GLRDLYRNN--------FEDLHCKFYQLERLM 169 (310)
T ss_dssp HHHHHHHCTTTCSCTTHHHHHHHHHHHSCHHHHHHHHHHHHHTS----CGGGGTHHH--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCC----CCCCCCCCC--------HHHHHHHHHHHHHHH
T ss_conf 99999978998855888999999999678998999999998612----630012134--------789999999999999
Q ss_pred HHHCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 98629999999984998611235779986045688467999999995149988777888888987544579804589999
Q 006546 157 SVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFSLGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSPRGALIAAM 236 (641)
Q Consensus 157 k~~DPeLysHL~klgIePqlFalRWLllLFsREFpLedvLrIWD~IFA~g~s~l~k~~e~~~ds~F~I~~spr~~lIlyI 236 (641)
+.+||+||+||.++|+.+.+|++||++++|+++||++.++||||++|+++. .+++++
T Consensus 170 ~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~-----------------------~~l~~v 226 (310)
T 3hzj_A 170 QEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGL-----------------------NIIFHV 226 (310)
T ss_dssp HHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCT-----------------------THHHHH
T ss_pred HHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-----------------------HHHHHH
T ss_conf 986869999999839982878999999997322989999999999998794-----------------------899999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHC-CCC----CCCHHHHHHHHHHHH
Q ss_conf 999999966221048998989999977-999----988999999999989
Q 006546 237 AVSMMLYIRSSLLATENATTCLQRLLN-FPV----NINLKKIIGKTKSLQ 281 (641)
Q Consensus 237 aVALLL~iRsqLLesDf~secLqlLln-lP~----~iDVekLIekA~sL~ 281 (641)
|+|||...|+.|++.++ .+++++|++ +|. ..|++.+|+.|..++
T Consensus 227 ~lail~~~~~~Ll~~d~-~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l~ 275 (310)
T 3hzj_A 227 ALALLKTSKEDLLQADF-EGALKFFRVQLPKRYRAEENARRLMEQACNIK 275 (310)
T ss_dssp HHHHHHHTHHHHHTCCH-HHHHHHHHTHHHHTTCSHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHCCCH-HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 99999997999976999-99999998738610244246999999998267
No 7
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=1.00 E-value=1 Score=207.99 Aligned_cols=166 Identities=15% Similarity=0.240 Sum_probs=139.7
Q ss_pred HHHHHHHHHHH-------CCCCCHHHHHC---CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99999987542-------02000887504---487467899999999722147887766666888787656708999999
Q 006546 80 IQTIVQLSDAY-------GAEGELGIVLS---EKFMEHDAYCMFDALMVGSQGSVSMADFFAHSHADGSLTCLLPVIEAS 149 (641)
Q Consensus 80 ~~~lv~Ls~AY-------g~e~eL~~LLs---~~~iEaDAFwlF~~LM~~i~~~y~M~DfFs~s~~~gS~tGLp~lIea~ 149 (641)
++.+.+++.|| ||+|||+.+.. ..+.|+||||||++||... +.++|..++. |+ ....
T Consensus 110 ~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~~e~~aF~~l~~l~~~~-----l~~~~~~~~~-----~~---~~~~ 176 (292)
T 4hl4_A 110 QEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHH-----LRDFMDPTMD-----NT---KHIL 176 (292)
T ss_dssp HHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHHCHHHHHHHHHHHHHTT-----TTGGGCSSSC-----TT---TGGG
T ss_pred HHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHH-----HHHHCCCCHH-----HH---HHHH
T ss_conf 999999999999988997851068999999999848999999999999998-----7874645469-----99---9999
Q ss_pred HHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999998629999999984998611235779986045688-4679999999951499887778888889875445798
Q 006546 150 SAMYHLLSVADSSLHSHLVELGVEPQYFGLRWLRVLFGREFS-LGDLLIIWDEIFASDSSKVNKDTEDDAGSGFGILSSP 228 (641)
Q Consensus 150 ~~L~~LLk~~DPeLysHL~klgIePqlFalRWLllLFsREFp-LedvLrIWD~IFA~g~s~l~k~~e~~~ds~F~I~~sp 228 (641)
..+..+|+.+||+||+||.++++ +.+|++|||+++|+++++ ++.++||||++|+++.
T Consensus 177 ~~l~~ll~~~~P~L~~hL~~~~i-~~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~--------------------- 234 (292)
T 4hl4_A 177 NYLMPIIDQVNPELHDFMQSAEV-GTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHP--------------------- 234 (292)
T ss_dssp GGHHHHHHHHCHHHHHHHC-CCC-CSGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCT---------------------
T ss_pred HHHHHHHHHHCHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC---------------------
T ss_conf 99999999878999999987499-74369999999996516858899999999999687---------------------
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 04589999999999966221048--99898999997799998899999999998999
Q 006546 229 RGALIAAMAVSMMLYIRSSLLAT--ENATTCLQRLLNFPVNINLKKIIGKTKSLQAL 283 (641)
Q Consensus 229 r~~lIlyIaVALLL~iRsqLLes--Df~secLqlLlnlP~~iDVekLIekA~sL~~~ 283 (641)
.+++++|+|||+..|++||+. ++ ..++.+|+++|...|++.||..|..|+..
T Consensus 235 --~~~~~v~~ail~~~~~~Ll~~~~d~-~~l~~~l~~lp~~~d~~~li~~A~~l~~~ 288 (292)
T 4hl4_A 235 --LMPIYFAAVIVLYREQEVLDCDCDM-ASVHHLLSQIPQDLPYETLISRAGDLFVQ 288 (292)
T ss_dssp --THHHHHHHHHHHHTHHHHHTSCCST-THHHHHHHSCCSSCCHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf --4999999999999799997587889-99999998688989999999999999987
No 8
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=1.00 E-value=1 Score=12.51 Aligned_cols=12 Identities=50% Similarity=0.617 Sum_probs=7.1
Q ss_pred HHHHHHHHCCCC
Q ss_conf 898777517864
Q 006546 397 LEDLSKELGFEE 408 (641)
Q Consensus 397 l~~~~~~l~~~~ 408 (641)
||-|-+++|+-|
T Consensus 117 lerlirevgsle 128 (134)
T 2l69_A 117 LERLIREVGSLE 128 (134)
T ss_dssp HHHHHHHHCCSC
T ss_pred HHHHHHHHCCCC
T ss_conf 999999845410
No 9
>3tg7_A Hexon protein, late protein 2; adenovirus structural protein, with NEW finding featuring PO binding to human coagulation factor X; 1.57A {Human adenovirus 5} PDB: 2bvi_F 1p30_A 1vsz_A 3iyn_A 1p2z_A* 2obe_A
Probab=1.00 E-value=1 Score=12.48 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=12.7
Q ss_pred HHHHHCCCCCHHHHHHCCCCC
Q ss_conf 123100244203444407897
Q 006546 531 QTVRKVLSGKFQWFWKFGRNS 551 (641)
Q Consensus 531 ~~~~k~~~~k~qw~~~~gr~~ 551 (641)
.+.||.|--|.-|--.|--|-
T Consensus 858 ~~~kkflcd~~lw~ipfssnf 878 (951)
T 3tg7_A 858 ITQKKFLCDRTLWRIPFSSNF 878 (951)
T ss_dssp EEEEEEEECSCCEEEESSTTS
T ss_pred CCCEEECCCCCEECCCCCCCC
T ss_conf 542344113532626333132
No 10
>2iny_A Hexon protein, late protein 2; avian adenovirus, CELO, major coat protein, crystal P nanotechnology, viral jelly roll, viral protein; 3.90A {Fowl adenovirus 1}
Probab=1.00 E-value=1 Score=12.01 Aligned_cols=12 Identities=50% Similarity=0.880 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q ss_conf 886776469777
Q 006546 605 MGTLKNLGQSML 616 (641)
Q Consensus 605 ~~tl~n~g~sml 616 (641)
||+|-.|||++|
T Consensus 873 MG~LTDlGQn~l 884 (942)
T 2iny_A 873 MGELTDLGQNPM 884 (942)
T ss_dssp CCSSCTTTSCTT
T ss_pred CCCCCCCCCCCC
T ss_conf 322342453300
Done!