Query 006547
Match_columns 641
No_of_seqs 165 out of 835
Neff 8.3
Searched_HMMs 29240
Date Tue Mar 26 19:00:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006547.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2173-2177//hhsearch_pdb/006547hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eh1_A Protein transport prote 1.0 1 1 970.4 51.9 566 2-623 42-662 (751)
2 3eh2_A Protein transport prote 1.0 1 1 964.8 49.9 575 2-622 45-672 (766)
3 3efo_B SEC24 related gene fami 1.0 1 1 963.6 49.8 576 2-623 49-677 (770)
4 1m2v_B SEC24, protein transpor 1.0 1 1 944.0 50.3 571 1-623 180-820 (926)
5 1pcx_A Protein transport prote 1.0 1 1 937.2 49.9 571 1-623 64-704 (810)
6 1m2o_A SEC23, protein transpor 1.0 1 1 929.2 48.3 593 2-637 11-691 (768)
7 2nut_A Protein transport prote 1.0 1 1 921.2 50.9 591 2-637 20-689 (769)
8 2yrc_A Protein transport prote 1.0 1 1 94.0 2.7 41 47-87 6-50 (59)
9 4fx5_A VON willebrand factor t 1.0 1 1 80.0 25.8 254 121-456 77-347 (464)
10 3ibs_A Conserved hypothetical 1.0 1 1 72.5 17.0 158 119-360 9-197 (218)
No 1
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=1.00 E-value=1 Score=970.44 Aligned_cols=566 Identities=23% Similarity=0.382 Sum_probs=492.8
Q ss_pred CEECCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEE-CCEEEECCCCCCC
Q ss_conf 010335867999788883399726598558878989999934679999887878770351562453-6445965799997
Q 006547 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELE-QWAWTCSLCGSLN 80 (641)
Q Consensus 2 ~iR~T~~~~P~~~~~~~~~~lPlg~~v~Pf~~~~~~~~~~~~~~~~~~p~RC~~C~ayiNp~~~~~-~~~w~C~lC~~~N 80 (641)
|||+|||+||.+++++++++||||++||||++..+ +|++. ..+|+||++||||+||||+|. +++|+||||+..|
T Consensus 42 ~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~~---~P~v~--~~~p~RC~rCrayiNPf~~f~~~~~w~Cn~C~~~N 116 (751)
T 3eh1_A 42 SFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLTQ---LPVIT--SNTIVRCRSCRTYINPFVSFIDQRRWKCNLCYRVN 116 (751)
T ss_dssp TEEESBSSEESSHHHHHHHCCCCEEEECTTCCCSC---CCEEC--CSCCCBCTTTCCBCCTTCEESSSSEEECTTTCCEE
T ss_pred EEEEECCCCCCCHHHHHHCCCCEEEEEECCCCCCC---CCCCC--CCCCCCCCCCCCEECCCEEEECCCEEECCCCCCCC
T ss_conf 57826344789999997278986999853876789---99439--99997466866890784278229989825566778
Q ss_pred CCCHHHHC-----CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCH---HHHHHHHHHHHHHHHHCC
Q ss_conf 89913220-----2479768553333228999428998654589995799999788894---689999999999997099
Q 006547 81 GLSSQAIA-----RYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSE---EFLELTRSALQAALEAVP 152 (641)
Q Consensus 81 ~~p~~~~~-----~~~~~~~~PEL~~~tve~~~p~~y~~~~~~~~~p~~vFvID~s~~~---~~l~~~~~~l~~~l~~l~ 152 (641)
++|++|.. ++.+.++||||+++||||++|++|+.+ ++.||+|+|+||+|..+ |.+++++++|+++|+.+|
T Consensus 117 ~~P~~y~~~~~~~~~~d~~~rpEL~~~tvEy~~p~~y~~r--~p~pp~yvFvIDvs~~a~~~g~l~~~~~sl~~~L~~lp 194 (751)
T 3eh1_A 117 DVPEEFMYNPLTRSYGEPHKRPEVQNSTVEFIASSDYMLR--PPQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLP 194 (751)
T ss_dssp ECCGGGC---------CGGGSHHHHCSEEEEEECGGGCSS--SCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHCCCCCCCCCCCCCCCHHCCCEEEEECCHHHHCC--CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8977871153233336744483002522799757665047--99985799999752766554299999999999998668
Q ss_pred CCC--EEEEEEECCEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHCC-CCC-CCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 996--9999861633899971499661124750799885430001002-654-656435576699999999760689864
Q 006547 153 SGA--LFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDV-MPL-SQFLAPVETFKENITSALETLRPTTSW 228 (641)
Q Consensus 153 ~~~--~vglItf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl~d~-~p~-~~~l~~~~e~~~~i~~ll~~l~~~~~~ 228 (641)
+++ +|||||||+.||||+++++..++++ .++.|++|+ +|. ++||++++|+++.|+++|++|+.++++
T Consensus 195 ~~~~~~VG~ITfd~~vh~y~l~~~~~~~qm---------lvv~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~ 265 (751)
T 3eh1_A 195 GDSRTRIGFMTFDSTIHFYNLQEGLSQPQM---------LIVSDIDDVFLPTPDSLLVNLYESKELIKDLLNALPNMFTN 265 (751)
T ss_dssp CCTTCEEEEEEESSSEEEEECCTTCSSCEE---------EEESCTTCTTSCCGGGTSEETTTTHHHHHHHHHHGGGTSTT
T ss_pred CCCCCEEEEEEECCEEEEEECCCCCCCCEE---------ECCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 986747999996877999977887666413---------42355444577780442002999999999999854675337
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC
Q ss_conf 22345556777755687636899999999641003897531169998338999999754356566744698851000159
Q 006547 229 ERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALL 308 (641)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gkIi~F~~g~pt~GpG~i~~~~~~~~~~~~~~~~e~~~~ 308 (641)
.. ++.+|+|+||++|..+|+..| |||++|++|+||+|||+++.|++++. + ++++|++++
T Consensus 266 ~~------------~~~~~~G~AL~aA~~ll~~~G------GrI~~F~sg~pt~GpG~l~~r~~~~~-~--~~~ke~~~~ 324 (751)
T 3eh1_A 266 TR------------ETHSALGPALQAAFKLMSPTG------GRVSVFQTQLPSLGAGLLQSREDPNQ-R--SSTKVVQHL 324 (751)
T ss_dssp CS------------CCCCCHHHHHHHHHHHHTTTC------EEEEEEECSCCCSSTTCCCCCCCSCG-G--GGSSSCTTC
T ss_pred CC------------CCCCCHHHHHHHHHHHHHCCC------CEEEEEECCCCCCCCCCCCCCCCCCC-C--CCCHHHHHH
T ss_conf 88------------876445999999999851479------77999955799778875545555555-7--870156550
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHCCCCCCCCCCEEEEEECCCCCC-------CHHHHHHHHHCCCCCCE
Q ss_conf 87406999999999883718889441599547120100113551089995789978-------41489999822585311
Q 006547 309 PEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDS-------TLPQDIYRMLSRPYAFN 381 (641)
Q Consensus 309 ~~~~~fY~~la~~~~~~~isvDif~~~~~~~~i~~l~~l~~~TGG~i~~y~~~~~~-------~l~~dl~~~l~~~~~~~ 381 (641)
+++++||++||.+|+++||+||+|+++.+|+|++||+.+++.|||.+++|++|+.+ +|.+|++|.+++++||+
T Consensus 325 ~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~~~~~~f~~dl~r~l~~~~gf~ 404 (751)
T 3eh1_A 325 GPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDLKRYLTRKIGFE 404 (751)
T ss_dssp SCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHHHHHHHHHHHHHHHSCCEEE
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 51689999999999865962799971675567186777776068669996786543462688999999999986540232
Q ss_pred EEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCCCCCH
Q ss_conf 28999658991232455225459998763013205998407999998437777778999767999880353166533311
Q 006547 382 CIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQYTVVVPPEELSS 461 (641)
Q Consensus 382 a~~rvR~S~gl~i~~~~G~~~~~~~~~~~~~~~~~~~~~s~~~~~e~~~~~~l~~~~~~~~~iQ~a~lYt~~~g~~~~~~ 461 (641)
|+||||||+|++|+++|||++.++ .+.|.++.+++|+|++++|++++ ++. ....+|||+|++||+..|+|++|+
T Consensus 405 a~mrVR~S~glkv~~~~G~~~~~~--t~~~~l~~i~~d~s~~v~~~~~~--~l~--~~~~~~~Q~allYT~~~G~RRiRV 478 (751)
T 3eh1_A 405 AVMRIRCTKGLSMHTFHGNFFVRS--TDLLSLANINPDAGFAVQLSIEE--SLT--DTSLVCFQTALLYTSSKGERRIRV 478 (751)
T ss_dssp EEEEEEECTTEEEEEEESSSEECS--SSEEEEEEECTTCCEEEEEEESS--CCC--SCSEEEEEEEEEEECTTSCEEEEE
T ss_pred EEEEEEECCCEEEEEEECCEEECC--CCCEEECCCCCCCEEEEEEEECC--CCC--CCCCEEEEEEEEEECCCCCEEEEE
T ss_conf 589997069848877667758179--87367126797878999999757--777--888459999894562899889999
Q ss_pred ------------HHHH-------------HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf ------------2589-------------999999406979999999999999999999976320256899755543112
Q 006547 462 ------------EGLG-------------SVILASLEQGVREGRMLLHDWLVILTAQYNEAFKLVQHNIGNSVTSQIDVE 516 (641)
Q Consensus 462 ------------~~~~-------------~~~~~~~~~~~~~~r~~l~~~l~~~l~~yr~~~~~~~~~~~~~~~~ql~l~ 516 (641)
++++ .++.++.++++.|+|+|+++++++++++||+++++. +.+|+
T Consensus 479 ~T~~l~vt~~~~~v~~~~DqeA~~~llar~av~~~~~~~l~d~r~~l~~~li~il~~Yr~~~~~~-------~~~~l--- 548 (751)
T 3eh1_A 479 HTLCLPVVSSLADVYAGVDVQAAICLLANMAVDRSVSSSLSDARDALVNAVVDSLSAYGSTVSNL-------QHSAL--- 548 (751)
T ss_dssp EEEEEEEECSHHHHHHTBCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTCC------------CC---
T ss_pred EEECCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-------CCCCC---
T ss_conf 98642125889999873599999999999999987419999999999999999999998754568-------88651---
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCEEEECCCCCCC--------CCCC
Q ss_conf 24762012088999998138223458999991499999999905994644631144228601699998--------8855
Q 006547 517 FLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLQRAVYPLLTSYSTPDKQA--------FPRH 588 (641)
Q Consensus 517 f~lp~~lk~lP~~~~~L~Ks~~l~~~~~~~s~D~r~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~--------~~~~ 588 (641)
.||++||+||+||++|+||++|+.+.+ +++|||+|+++.++++++.+++.|+||+||++|++.+++ .|.|
T Consensus 549 -~lpe~lkllP~~~~~L~Ks~~~~~~~~-~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~h~l~~~~~~~~~~~~~~~P 626 (751)
T 3eh1_A 549 -MAPSSLKLFPLYVLALLKQKAFRTGTS-TRLDDRVYAMCQIKSQPLVHLMKMIHPNLYRIDRLTDEGAVHVNDRIVPQP 626 (751)
T ss_dssp -EEEGGGTTHHHHHHHHHTSTTTCCSSC-CCHHHHHHHHHHHHHSCHHHHHHHHSCEEEECTTCCSTTCEEETTEEECCC
T ss_pred -CCCHHHHHHHHHHHHHHCCHHHCCCCC-CCHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf -176778899999999973385358899-991099999999967999998864266289820476335756688766789
Q ss_pred CCC--HHHHCCCCCCEEEEECCCEEEEEECCCCCCCC
Q ss_conf 662--23230479948998279499999849999999
Q 006547 589 SLS--RAALITSGSPIFLLDAFTTIIVFYSSTADPTL 623 (641)
Q Consensus 589 ~L~--~~~~~~~~~~iyLlD~~~~i~i~~G~~~~~~~ 623 (641)
++. ++.+ +.++||||||+|++++||+|++++|++
T Consensus 627 ~~l~ls~~~-l~~~giyLlD~g~~i~lw~G~~v~~~l 662 (751)
T 3eh1_A 627 PLQKLSAEK-LTREGAFLMDCGSVFYIWVGKGCDNNF 662 (751)
T ss_dssp CCBCSSGGG-CCTTSEEEEECSSEEEEEECTTCCHHH
T ss_pred CCCCCCHHH-CCCCCEEEEECCCEEEEEECCCCCHHH
T ss_conf 734677988-225878999789889999779899899
No 2
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=1.00 E-value=1 Score=964.76 Aligned_cols=575 Identities=20% Similarity=0.338 Sum_probs=502.7
Q ss_pred CEECCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCEEEECCCEEEC--CEEEECCCCC
Q ss_conf 010335867999788883399726598558878989999-9346799998878787703515624536--4459657999
Q 006547 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAA-PVYGSDGHMLPRCENCYAYFNTYCELEQ--WAWTCSLCGS 78 (641)
Q Consensus 2 ~iR~T~~~~P~~~~~~~~~~lPlg~~v~Pf~~~~~~~~~-~~~~~~~~~p~RC~~C~ayiNp~~~~~~--~~w~C~lC~~ 78 (641)
|||+|||+||.++++++++++|||++||||++..+.+.+ |+++...++|+||++|||||||||+|++ ++|+||||+.
T Consensus 45 ~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~ 124 (766)
T 3eh2_A 45 YIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSC 124 (766)
T ss_dssp TEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGGCCCBCTTTCCBCCTTCEEEGGGTEEECTTTCC
T ss_pred EEECCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCEECCCEEEECCCCEEEECCCCC
T ss_conf 37760444799999997278983899836986865578997604788888716898888277358825998899524566
Q ss_pred CCCCCHHHHCC------CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCH---HHHHHHHHHHHHHHH
Q ss_conf 97899132202------479768553333228999428998654589995799999788894---689999999999997
Q 006547 79 LNGLSSQAIAR------YTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSE---EFLELTRSALQAALE 149 (641)
Q Consensus 79 ~N~~p~~~~~~------~~~~~~~PEL~~~tve~~~p~~y~~~~~~~~~p~~vFvID~s~~~---~~l~~~~~~l~~~l~ 149 (641)
.|++|++|++. +.++++||||++|+|||++|.||+....++.||+|+|+||+|..+ |++++++++|+++|+
T Consensus 125 ~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~~vef~a~~eY~~~~~~p~pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~ 204 (766)
T 3eh2_A 125 INDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLD 204 (766)
T ss_dssp EEECCTTTTGGGGGSSSCCCCSCCHHHHCSEEEEECCGGGSGGGSCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHCCCCCCCCCCEEEEEEECCHHHCCCHHHHHHHHHHHHHHH
T ss_conf 68899788334553466466446842366842330687550578899997899999884342103189999999999998
Q ss_pred HCCCC-------CEEEEEEECCEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHCC-CCC-CCCCCCHHHHHHHHHHHHH
Q ss_conf 09999-------69999861633899971499661124750799885430001002-654-6564355766999999997
Q 006547 150 AVPSG-------ALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDV-MPL-SQFLAPVETFKENITSALE 220 (641)
Q Consensus 150 ~l~~~-------~~vglItf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl~d~-~p~-~~~l~~~~e~~~~i~~ll~ 220 (641)
.||++ ++|||||||+.||||+++++..++++. ++.|++|+ +|+ ++||++++|+++.|+++|+
T Consensus 205 ~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~---------vv~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~ 275 (766)
T 3eh2_A 205 FLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMM---------VVSDVADMFVPLLDGFLVNVNESRAVITSLLD 275 (766)
T ss_dssp GCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEE---------EECCTTTCCCCCCTTSSBCTTTTHHHHHHHHH
T ss_pred HCCCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCCEEE---------EECCHHHHCCCCCCCEEEEHHHHHHHHHHHHH
T ss_conf 587533567766359999958879999778877786599---------84475664066545356768998999999998
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf 6068986422345556777755687636899999999641003897531169998338999-999754356566744698
Q 006547 221 TLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPD-HGAGQLDTRRYGEQYASK 299 (641)
Q Consensus 221 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gkIi~F~~g~pt-~GpG~i~~~~~~~~~~~~ 299 (641)
+|++++++.+ .+.+|+|+|+++|+.+++..+. ||||++|++|+|+ .|||+++.+++++.++
T Consensus 276 ~L~~~~~~~~------------~~~t~~g~al~aa~~~l~~~~~----GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~-- 337 (766)
T 3eh2_A 276 QIPEMFADTR------------ETETVFVPVIQAGMEALKAAEC----AGKLFLFHTSLPIAEAPGKLKNRDDRKLIN-- 337 (766)
T ss_dssp HHHHHHTTCC------------CCCCCSHHHHHHHHHHHHHTTC----CEEEEEEECSCCCSSSTTCCCCCCCGGGTT--
T ss_pred HHHHHCCCCC------------CCCCHHHHHHHHHHHHHCCCCC----CCEEEEEECCCCCCCCCCCCCCCCCCCCCC--
T ss_conf 6165415788------------8764179999999998356898----868999966789867886210455455677--
Q ss_pred CCCHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHCCCCCCCCCCEEEEEECCCCC----CCHHHHHHHHHC
Q ss_conf 8510001598740699999999988371888944159954712010011355108999578997----841489999822
Q 006547 300 GEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDD----STLPQDIYRMLS 375 (641)
Q Consensus 300 ~~~~e~~~~~~~~~fY~~la~~~~~~~isvDif~~~~~~~~i~~l~~l~~~TGG~i~~y~~~~~----~~l~~dl~~~l~ 375 (641)
+++|+++++++++||++||.+|+++||+||+|+++.+|+|+++|+.+++.|||.+++|++|+. ++|.+||.|.++
T Consensus 338 -sdke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~d~~~f~~dl~~~l~ 416 (766)
T 3eh2_A 338 -TDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYASFQVENDQERFLSDLRRDVQ 416 (766)
T ss_dssp -STTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf -7200332064389999999998757868999981487768487877776069669996798606678999999999753
Q ss_pred CCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCC
Q ss_conf 58531128999658991232455225459998763013205998407999998437777778999767999880353166
Q 006547 376 RPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQYTVVVP 455 (641)
Q Consensus 376 ~~~~~~a~~rvR~S~gl~i~~~~G~~~~~~~~~~~~~~~~~~~~~s~~~~~e~~~~~~l~~~~~~~~~iQ~a~lYt~~~g 455 (641)
+++||+|+||||||+|++|+++|||++.++ .+.|.++.+++|+|++++|++++ ++. ....+|||+|++||+..|
T Consensus 417 ~~~gf~a~mrVR~S~glkv~~~~G~~~~~~--t~~~~l~~i~~d~s~~v~f~~~~--~l~--~~~~~~~Q~allYt~~~G 490 (766)
T 3eh2_A 417 KVVGFDAVMRVRTSTGIRAVDFFGAFYMSN--TTDVELAGLDGDKTVTVEFKHDD--RLN--EESGALLQCALLYTSCAG 490 (766)
T ss_dssp SCEEEEEEEEEEECTTEEEEEEEESCBCSS--SSCEEEEEEETTCCEEEEEEESS--CCC--TTTCEEEEEEEEEECTTS
T ss_pred HCCEEEEEEEEEECCCEEEEEEECCEECCC--CCCEEECCCCCCCEEEEEEEECC--CCC--CCCCEEEEEEEEEECCCC
T ss_conf 251001799999569837988677854589--77446225798856999999557--777--888579999998580899
Q ss_pred CCCCCH------------HHHH-------------HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 533311------------2589-------------999999406979999999999999999999976320256899755
Q 006547 456 PEELSS------------EGLG-------------SVILASLEQGVREGRMLLHDWLVILTAQYNEAFKLVQHNIGNSVT 510 (641)
Q Consensus 456 ~~~~~~------------~~~~-------------~~~~~~~~~~~~~~r~~l~~~l~~~l~~yr~~~~~~~~~~~~~~~ 510 (641)
+|++|+ ++++ .++.++.++++.++|+.|.+++++++..||+.|+.. ++.
T Consensus 491 ~RRiRV~T~~l~vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~~~~~R~~l~~~~~~~l~~Yrk~~~~~------~s~ 564 (766)
T 3eh2_A 491 QRRLRIHNLALNCCTQLADLYRNCETDTLINYMAKFAYRGVLNSPVKAVRDTLITQCAQILACYRKNCASP------SSA 564 (766)
T ss_dssp CEEEEEEEEEEEEESSHHHHHHTBCHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred CEEEEEEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC------CCC
T ss_conf 88999997744752889999973299999999999999875208999999999999999999998643588------886
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCEEEECCCCCC--CCCCC
Q ss_conf 5431122476201208899999813822345899999149999999990599464463114422860169999--88855
Q 006547 511 SQIDVEFLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLQRAVYPLLTSYSTPDKQ--AFPRH 588 (641)
Q Consensus 511 ~ql~l~f~lp~~lk~lP~~~~~L~Ks~~l~~~~~~~s~D~r~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~--~~~~~ 588 (641)
+|+ .||++||+||+||++|+||++|+.+.+ +++|||+|+++.++++++.+++.|+||+||++|+++.+ ..|.+
T Consensus 565 ~ql----~lp~~lkllP~~~~~L~Ks~~l~~~~~-~s~Der~~~~~~l~~~~~~~~l~~iyP~L~~~h~~~~~~~~~P~~ 639 (766)
T 3eh2_A 565 GQL----ILPECMKLLPVYLNCVLKSDVLQPGAE-VTTDDRAYVRQLVTSMDVTETNVFFYPRLLPLTKSPVESTTEPPA 639 (766)
T ss_dssp CCC----CCCGGGTTHHHHHHHHHTSTTTSCCTT-CCHHHHHHHHHHHHHCCHHHHHHHHSCEEEECSSCCCSCC--CCC
T ss_pred CCE----ECCHHHHHHHHHHHHHHCCHHHCCCCC-CCCCHHHHHHHHHHCCCHHHHHHHHHHEEEEEECCCCCCCCCCCC
T ss_conf 543----167789999999999975685367899-983399999999977999999998753489962377555668987
Q ss_pred CCCHHHHCCCCCCEEEEECCCEEEEEECCCCCCC
Q ss_conf 6622323047994899827949999984999999
Q 006547 589 SLSRAALITSGSPIFLLDAFTTIIVFYSSTADPT 622 (641)
Q Consensus 589 ~L~~~~~~~~~~~iyLlD~~~~i~i~~G~~~~~~ 622 (641)
+++++.+ +.++||||||+|++++||+|++++|+
T Consensus 640 v~ls~~~-l~~~giyLlD~g~~i~lw~G~~v~~~ 672 (766)
T 3eh2_A 640 VRASEER-LSNGDIYLLENGLNLFLWVGASVQQG 672 (766)
T ss_dssp BCSSGGG-CCTTCEEEEECSSEEEEEECTTCCHH
T ss_pred CCCCHHH-CCCCCEEEEECCCEEEEEECCCCCHH
T ss_conf 3776887-17895899976857999966878989
No 3
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=1.00 E-value=1 Score=963.62 Aligned_cols=576 Identities=21% Similarity=0.342 Sum_probs=501.7
Q ss_pred CEECCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCEEEECCCEEEC--CEEEECCCCC
Q ss_conf 010335867999788883399726598558878989999-9346799998878787703515624536--4459657999
Q 006547 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAA-PVYGSDGHMLPRCENCYAYFNTYCELEQ--WAWTCSLCGS 78 (641)
Q Consensus 2 ~iR~T~~~~P~~~~~~~~~~lPlg~~v~Pf~~~~~~~~~-~~~~~~~~~p~RC~~C~ayiNp~~~~~~--~~w~C~lC~~ 78 (641)
|||+|||+||.++++++++++|||++||||++..+.|.+ |+++...++|+||++|||||||||+|+. ++|+||||+.
T Consensus 49 ~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~~~~~~e~p~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~ 128 (770)
T 3efo_B 49 FIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGESGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNC 128 (770)
T ss_dssp TEEESBSEEESSHHHHHHHCCCCEEEECTTCCCCTTSCCCCEECCTTTCSCBCTTTCCBSCTTCEEEGGGTEEECTTTCC
T ss_pred EEEEECCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCC
T ss_conf 58841134799999997379984999975887876568987425778898735887888177359815997799546655
Q ss_pred CCCCCHHHHCC------CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCH---HHHHHHHHHHHHHHH
Q ss_conf 97899132202------479768553333228999428998654589995799999788894---689999999999997
Q 006547 79 LNGLSSQAIAR------YTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSE---EFLELTRSALQAALE 149 (641)
Q Consensus 79 ~N~~p~~~~~~------~~~~~~~PEL~~~tve~~~p~~y~~~~~~~~~p~~vFvID~s~~~---~~l~~~~~~l~~~l~ 149 (641)
.|++|++|++. +.++.+||||++|+|||++|.+|+....++.||+|+|+||+|..+ |++++++++|+++|+
T Consensus 129 ~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~tvEf~ap~eY~~~~~~p~pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~ 208 (770)
T 3efo_B 129 VNDVPPFYFQHLDHIGRRLDHYEKPELSLGSYEYVATLDYCRKSKPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLE 208 (770)
T ss_dssp EEECCGGGCCCCCSSSCTTTGGGSHHHHCSEEEEECCGGGSGGGSCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHCCCCCCCCCEEEEEEECCHHHCCCHHHHHHHHHHHHHHH
T ss_conf 57882675234553466466446920056742331687874367899985899999861432001289999999999998
Q ss_pred HCCCC-------CEEEEEEECCEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHCC-CCC-CCCCCCHHHHHHHHHHHHH
Q ss_conf 09999-------69999861633899971499661124750799885430001002-654-6564355766999999997
Q 006547 150 AVPSG-------ALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDV-MPL-SQFLAPVETFKENITSALE 220 (641)
Q Consensus 150 ~l~~~-------~~vglItf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl~d~-~p~-~~~l~~~~e~~~~i~~ll~ 220 (641)
.||++ ++|||||||+.||||++++...+++++ ++.|++|+ +|+ ++||++++|+++.|+++|+
T Consensus 209 ~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~---------vv~d~~d~f~P~~~~~Lv~l~e~~~~i~~lL~ 279 (770)
T 3efo_B 209 KIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMM---------VVTDVGEVFVPLLDGFLVNYQESQSVIHNLLD 279 (770)
T ss_dssp GCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEE---------EECCTTSCCCCCSSSSSBCTTTTHHHHHHHHH
T ss_pred HCCCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCCEEE---------EECCCCCCCCCCCCCEEEEHHHHHHHHHHHHH
T ss_conf 588533566766359999968889999678855675499---------84264324677755503549999999999998
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf 6068986422345556777755687636899999999641003897531169998338999-999754356566744698
Q 006547 221 TLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPD-HGAGQLDTRRYGEQYASK 299 (641)
Q Consensus 221 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gkIi~F~~g~pt-~GpG~i~~~~~~~~~~~~ 299 (641)
+|++++++.+ .+.+|+|+|+++|..+++..+. ||||++|++|+|+ .|||+++.|++++.++
T Consensus 280 ~L~~~~~~~~------------~~~t~~g~al~aa~~~l~~~~~----GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~-- 341 (770)
T 3efo_B 280 QIPDMFADSN------------ENETVFAPVIQAGMEALKAADC----PGKLFIFHSSLPTAEAPGKLKNRDDKKLVN-- 341 (770)
T ss_dssp HHHHHHHTCC------------CCCCCCHHHHHHHHHHHHHHTC----CEEEEEEECSCCCSSSTTCCCCCCCCCCSS--
T ss_pred HHHHHCCCCC------------CCCCHHHHHHHHHHHHHCCCCC----CCEEEEEECCCCCCCCCCCCCCCCCCCCCC--
T ss_conf 6276525788------------8753489999999998466888----858999955789767886542444444567--
Q ss_pred CCCHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHCCCCCCCCCCEEEEEECCCC----CCCHHHHHHHHHC
Q ss_conf 851000159874069999999998837188894415995471201001135510899957899----7841489999822
Q 006547 300 GEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTD----DSTLPQDIYRMLS 375 (641)
Q Consensus 300 ~~~~e~~~~~~~~~fY~~la~~~~~~~isvDif~~~~~~~~i~~l~~l~~~TGG~i~~y~~~~----~~~l~~dl~~~l~ 375 (641)
+++|+++++++++||++||.+|+++||+||+|+++.+|+|+++|+.+++.|||.+++|++|+ .++|.+|+.+.++
T Consensus 342 -t~ke~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~~~~~f~~dl~~~l~ 420 (770)
T 3efo_B 342 -TDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNNFQMHLDRQQFLNDLRNDIE 420 (770)
T ss_dssp -CSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf -7201443053379999999999975947999970587668488887876069669985687606689999999998632
Q ss_pred CCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCC
Q ss_conf 58531128999658991232455225459998763013205998407999998437777778999767999880353166
Q 006547 376 RPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQYTVVVP 455 (641)
Q Consensus 376 ~~~~~~a~~rvR~S~gl~i~~~~G~~~~~~~~~~~~~~~~~~~~~s~~~~~e~~~~~~l~~~~~~~~~iQ~a~lYt~~~g 455 (641)
+++||+|+||||||+|++|+++|||++.++ .+.|.++.+++++|++++|++++ ++. ....+|||+|++||+..|
T Consensus 421 ~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~--t~~~~l~~~~~d~s~~v~f~~~~--~l~--~~~~~~~Q~allYt~~~G 494 (770)
T 3efo_B 421 KKIGFDAIMRVRTSTGFRATDFFGGILMNN--TTDVEMAAIDCDKAVTVEFKHDD--KLS--EDSGALIQCAVLYTTISG 494 (770)
T ss_dssp SCEEEEEEEEEEECTTEEEEEEESSCBCSS--SSCEEEEEEESSCCEEEEEEESS--CCB--TTTBEEEEEEEEEECTTC
T ss_pred HCEEEEEEEEEEECCCEEEEEEECCEECCC--CCCEEECCCCCCCEEEEEEEECC--CCC--CCCCEEEEEEEEEECCCC
T ss_conf 244423799999659848998677705788--87448405686746999999447--777--888579999998781899
Q ss_pred CCCCCH------------HHHH-------------HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 533311------------2589-------------999999406979999999999999999999976320256899755
Q 006547 456 PEELSS------------EGLG-------------SVILASLEQGVREGRMLLHDWLVILTAQYNEAFKLVQHNIGNSVT 510 (641)
Q Consensus 456 ~~~~~~------------~~~~-------------~~~~~~~~~~~~~~r~~l~~~l~~~l~~yr~~~~~~~~~~~~~~~ 510 (641)
+|++|+ ++++ .++.++.+++++++|+.|.+++++++..||+.|+.. + +.
T Consensus 495 ~RRiRV~T~~l~vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~l~~~r~~L~~~~~~~l~~Yrk~~~~~-----~-s~ 568 (770)
T 3efo_B 495 QRRLRIHNLGLNCSSQLADLYKSCETDALINFFAKSAFKAVLHQPLKVIREILVNQTAHMLACYRKNCASP-----S-AA 568 (770)
T ss_dssp CEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTSCC-----C-CT
T ss_pred CEEEEEEEECHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-----C-CC
T ss_conf 98999998634012668999973099999999999999986227799999999999999999999753377-----8-86
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCEEEECCCCCC--CCCCC
Q ss_conf 5431122476201208899999813822345899999149999999990599464463114422860169999--88855
Q 006547 511 SQIDVEFLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLQRAVYPLLTSYSTPDKQ--AFPRH 588 (641)
Q Consensus 511 ~ql~l~f~lp~~lk~lP~~~~~L~Ks~~l~~~~~~~s~D~r~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~--~~~~~ 588 (641)
+|+ .||++||+||+||++|+||++|+.+.+ +++|||+|+++.++++++.+++.|+||+||++|+++.+ ..|.+
T Consensus 569 ~ql----~Lp~~lkllP~~~~~L~Ks~~l~~~~~-~s~Der~~~~~~l~~~~~~~~l~~iyP~L~~~h~l~~~~~~~P~~ 643 (770)
T 3efo_B 569 SQL----ILPDSMKVLPVYMNCLLKNCVLLSRPE-ISTDERAYQRQLVMTMGVADSQLFFYPQLLPIHTLDVKSTMLPAA 643 (770)
T ss_dssp TEE----EECGGGTTHHHHHHHHHHSGGGSCSSS-SCHHHHHHHHHHHHHCCHHHHHHHHSCEEEECTTCCSSSCSCCCC
T ss_pred CCE----ECCHHHHHHHHHHHHHHCCHHHCCCCC-CCCCHHHHHHHHHHCCCHHHHHHHHCCCEEEEECCCCCCCCCCCC
T ss_conf 542----067889999999999967574268899-982399999999977999999986102469974056555667877
Q ss_pred CCCHHHHCCCCCCEEEEECCCEEEEEECCCCCCCC
Q ss_conf 66223230479948998279499999849999999
Q 006547 589 SLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTL 623 (641)
Q Consensus 589 ~L~~~~~~~~~~~iyLlD~~~~i~i~~G~~~~~~~ 623 (641)
+++++.+ +.++||||||+|++++||+|++++|++
T Consensus 644 v~ls~~~-l~~~giyLLD~g~~i~lw~G~~v~~~l 677 (770)
T 3efo_B 644 VRCSESR-LSEEGIFLLANGLHMFLWLGVSSPPEL 677 (770)
T ss_dssp CCSSGGG-CCTTCEEEEECSSEEEEEECTTCCHHH
T ss_pred CCCCHHH-CCCCCEEEEECCCEEEEEECCCCCHHH
T ss_conf 2772997-188957999878579999668789899
No 4
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=1.00 E-value=1 Score=944.01 Aligned_cols=571 Identities=19% Similarity=0.351 Sum_probs=490.4
Q ss_pred CCEECCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCEEEECCCEEEC--CEEEECCCC
Q ss_conf 901033586799978888339972659855887898999-99346799998878787703515624536--445965799
Q 006547 1 MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGA-APVYGSDGHMLPRCENCYAYFNTYCELEQ--WAWTCSLCG 77 (641)
Q Consensus 1 ~~iR~T~~~~P~~~~~~~~~~lPlg~~v~Pf~~~~~~~~-~~~~~~~~~~p~RC~~C~ayiNp~~~~~~--~~w~C~lC~ 77 (641)
.|||+|||+||.+++++++++||||++|+||++..+.+. +|++. ...|+||++|||||||||+|+. ++|+||||+
T Consensus 180 ~~vR~T~n~iP~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv~--~~~pvRC~rCrAYiNPf~~~~~~g~~W~CnfC~ 257 (926)
T 1m2v_B 180 DYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNE--DGLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCR 257 (926)
T ss_dssp TTEEESBSSEESBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEEC--SCCCCBCSSSCCBCCTTCEEETTTTEEECTTTC
T ss_pred CCEECCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC--CCCCCCCCCCCCEECCCEEEECCCCEEECCCCC
T ss_conf 844641144799999997278984899852777666778887038--999973698558816825993799879854789
Q ss_pred CCCCCCHHHHC----CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCH---HHHHHHHHHHHHHHHH
Q ss_conf 99789913220----2479768553333228999428998654589995799999788894---6899999999999970
Q 006547 78 SLNGLSSQAIA----RYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSE---EFLELTRSALQAALEA 150 (641)
Q Consensus 78 ~~N~~p~~~~~----~~~~~~~~PEL~~~tve~~~p~~y~~~~~~~~~p~~vFvID~s~~~---~~l~~~~~~l~~~l~~ 150 (641)
+.|++|++|+. ...++.+||||+++||||++|++|+.+ ++.||+|+||||+|..+ |.+++++++|+.+|+.
T Consensus 258 ~~N~~P~~Y~~~~~~~~~d~~~RpEL~~~tvEyi~p~ey~~r--~p~ppvyvFvIDvS~~av~~g~l~~l~~sI~~~L~~ 335 (926)
T 1m2v_B 258 LANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLR--QPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDS 335 (926)
T ss_dssp CEEECCGGGTTTSTTCGGGGGGSHHHHCSEEEEECCGGGCSS--CCCCCBEEEEEECSHHHHHSCHHHHHHHHHHHTTTT
T ss_pred CCCCCCHHHCCCCCCCCCCCCCCCCCCCCEEEEECCHHHCCC--CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 878996665245446856401274215762899727021147--999868999998977887622999999999999985
Q ss_pred CCC---CCEEEEEEECCEEEEEECCCCCC-------CEEEEEECCCCCCCCCHHHHCC-CCC-CCCCCCHHHHHHHHHHH
Q ss_conf 999---96999986163389997149966-------1124750799885430001002-654-65643557669999999
Q 006547 151 VPS---GALFGLATFSHKIGLYDVQGAIP-------VVKNVFIPSDTEDTLSLELEDV-MPL-SQFLAPVETFKENITSA 218 (641)
Q Consensus 151 l~~---~~~vglItf~~~V~~~~l~~~~~-------~~~~v~~~~~~~~~~~~dl~d~-~p~-~~~l~~~~e~~~~i~~l 218 (641)
||+ +++|||||||+.||||+++.+.. ++++ .++.|++|+ +|. ++||++++|+++.|+++
T Consensus 336 LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~~~q~qm---------lvvsdl~d~f~P~~~~~Lv~l~e~~~~I~~l 406 (926)
T 1m2v_B 336 IPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINM---------MDIADLEEPFLPRPNSMVVSLKACRQNIETL 406 (926)
T ss_dssp SCCTTSCCEECEEEESSSEEEEECCCC---------CCEE---------EEECCCSSCCCSCSSSSSEETTTTHHHHHHH
T ss_pred CCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCHHH---------CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 7787887279999989879999567766677444126121---------1445621146778422133189999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97606898642234555677775568763689999999964100389753116999833899999975435656674469
Q 006547 219 LETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYAS 298 (641)
Q Consensus 219 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gkIi~F~~g~pt~GpG~i~~~~~~~~~~~ 298 (641)
|++|+++++.. +++.+|+|+||++|..+|+..| |||++|++|+||+|||+|+.++++++
T Consensus 407 Le~L~~~~~~~------------~~~~~~~G~AL~aA~~lL~~~G------GrI~~F~sg~Pt~GpG~l~~re~~~~--- 465 (926)
T 1m2v_B 407 LTKIPQIFQSN------------LITNFALGPALKSAYHLIGGVG------GKIIVVSGTLPNLGIGKLQRRNESGV--- 465 (926)
T ss_dssp HHHHHHHTSSC------------CCCCCCHHHHHHHHHHHHTTTC------EEEEEEESSCCCSSTTCCCCCCC------
T ss_pred HHHHHHHHCCC------------CCCCCCHHHHHHHHHHHHHHHC------CEEEEEECCCCCCCCCCCCCCCCCCC---
T ss_conf 98616540478------------8887428999999999998519------88999956899778876656631001---
Q ss_pred CCCCHHHC-CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHCCCCCCCCCCEEEEEECCCCCC------CHHHHHH
Q ss_conf 88510001-5987406999999999883718889441599547120100113551089995789978------4148999
Q 006547 299 KGEDADRA-LLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDS------TLPQDIY 371 (641)
Q Consensus 299 ~~~~~e~~-~~~~~~~fY~~la~~~~~~~isvDif~~~~~~~~i~~l~~l~~~TGG~i~~y~~~~~~------~l~~dl~ 371 (641)
+++++|+. +++++.+||++||.+|++++|+||+|+++.+|+|+++|+.|++.|||.+++|++|+.. +|..|+.
T Consensus 466 ~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v~~y~~F~~~~~~d~~kf~~dl~ 545 (926)
T 1m2v_B 466 VNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFA 545 (926)
T ss_dssp -CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEESCCTTSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 68531023313510799999999999769379999736877683888878763796699818876212667999999999
Q ss_pred HHHCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 98225853112899965899123245522545999876301320599840799999843777777899976799988035
Q 006547 372 RMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQYT 451 (641)
Q Consensus 372 ~~l~~~~~~~a~~rvR~S~gl~i~~~~G~~~~~~~~~~~~~~~~~~~~~s~~~~~e~~~~~~l~~~~~~~~~iQ~a~lYt 451 (641)
+.+++++||+|+||||||+||+|+++|||++.++ .+.|.++.+++++|++|+|++++ ++. ...+|||+|++||
T Consensus 546 ~~Lt~~~gf~a~mrVR~S~glkv~~~~G~~~~~~--s~~~~l~~l~~d~s~av~f~~~~--~l~---~~~~~~Q~allYT 618 (926)
T 1m2v_B 546 KHISMDFCMETVMRARGSTGLRMSRFYGHFFNRS--SDLCAFSTMPRDQSYLFEVNVDE--SIM---ADYCYVQVAVLLS 618 (926)
T ss_dssp HHHHSCCEEEEEEEEEECTTEEEEEEESSSBCSS--TTEEEEEEECSSCCEEEEEEECS--BCC---SSEEEEEEEEEEE
T ss_pred HHHHHHHCEEEEEEEEECCCCEEEEEECCCCCCC--CCCEEEECCCCCCEEEEEEEECC--CCC---CCCEEEEEEEEEE
T ss_conf 7755430034799998079807987436724467--67667305688877999999656--778---8857999999888
Q ss_pred ECCCCCCCCH------------HHH-------------HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 3166533311------------258-------------999999940697999999999999999999997632025689
Q 006547 452 VVVPPEELSS------------EGL-------------GSVILASLEQGVREGRMLLHDWLVILTAQYNEAFKLVQHNIG 506 (641)
Q Consensus 452 ~~~g~~~~~~------------~~~-------------~~~~~~~~~~~~~~~r~~l~~~l~~~l~~yr~~~~~~~~~~~ 506 (641)
+..|+|++|+ +++ +.++.++.++++.|+|+||+++|++++..||+.+++. +.
T Consensus 619 ~~~G~RRiRV~T~~l~vt~~l~~v~~s~Dqea~~~llar~av~~~~~~~~~d~r~~L~~~li~il~~Yrk~~~~~--~~- 695 (926)
T 1m2v_B 619 LNNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVS--NT- 695 (926)
T ss_dssp ETTTEEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHTCCC--TT-
T ss_pred CCCCCEEEEEEEECCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC--CC-
T ss_conf 699978999994055566889999985299999999999999876308899999999999999999986414445--67-
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCEEEECCCCC-CC-
Q ss_conf 9755543112247620120889999981382234589999914999999999059946446311442286016999-98-
Q 006547 507 NSVTSQIDVEFLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLQRAVYPLLTSYSTPDK-QA- 584 (641)
Q Consensus 507 ~~~~~ql~l~f~lp~~lk~lP~~~~~L~Ks~~l~~~~~~~s~D~r~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~-~~- 584 (641)
.++- +|.||++||+||+|||+|+||++|+ ++. +++|||+|+++++++++++.++.|+||+||++|++.+ .+
T Consensus 696 ---~~~~--sl~Lp~~lkllP~~~~~L~KS~~l~-~~~-~p~Dera~~~~~l~~~~~~~l~~~iyP~L~s~h~~~~~~g~ 768 (926)
T 1m2v_B 696 ---AGGA--PLRLCANLRMFPLLMHSLTKHMAFR-SGI-VPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGL 768 (926)
T ss_dssp ---SSSS--CCEEEGGGTTHHHHHHHHHTSTTTC-SSC-CCHHHHHHHHHHHHHSCHHHHHHHHSCEEEETTTCCSSCSC
T ss_pred ---CCCC--CCCCCHHHHHHHHHHHHHHCCHHHC-CCC-CCCCHHHHHHHHHHCCCHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf ---7775--3206778999999999986154107-999-89139999999998599999997406768970357501266
Q ss_pred --------------CCCCCCCHHHHCCCCCCEEEEECCCEEEEEECCCCCCCC
Q ss_conf --------------885566223230479948998279499999849999999
Q 006547 585 --------------FPRHSLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTL 623 (641)
Q Consensus 585 --------------~~~~~L~~~~~~~~~~~iyLlD~~~~i~i~~G~~~~~~~ 623 (641)
+|.++.+++.. ++++++||||+|..+++|+|.+++|++
T Consensus 769 ~~~~~~~~~~~~~~~P~~l~Ls~~~-l~~~g~yLld~G~~i~lWvG~~~~p~l 820 (926)
T 1m2v_B 769 PVQTEDGEATGTIVLPQPINATSSL-FERYGLYLIDNGNELFLWMGGDAVPAL 820 (926)
T ss_dssp C---------CCCCCCCCBCSCSTT-CCTTCEEEEECSSEEEEEECTTCCSGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHH-HCCCCEEEEECCCEEEEEECCCCCHHH
T ss_conf 4334455555653568740676998-366988999879889999668899799
No 5
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=1.00 E-value=1 Score=937.17 Aligned_cols=571 Identities=19% Similarity=0.355 Sum_probs=489.6
Q ss_pred CCEECCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCEEEECCCEEEC--CEEEECCCC
Q ss_conf 901033586799978888339972659855887898999-99346799998878787703515624536--445965799
Q 006547 1 MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGA-APVYGSDGHMLPRCENCYAYFNTYCELEQ--WAWTCSLCG 77 (641)
Q Consensus 1 ~~iR~T~~~~P~~~~~~~~~~lPlg~~v~Pf~~~~~~~~-~~~~~~~~~~p~RC~~C~ayiNp~~~~~~--~~w~C~lC~ 77 (641)
.|||+|||+||.+++++++++||||++|+||++..+.+. +|++ ....|+||++||||+||||+|+. ++|+||||+
T Consensus 64 ~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv--~~~~pvRC~~CrayiNPf~~~~~~g~~W~C~~C~ 141 (810)
T 1pcx_A 64 DYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLN--EDGLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCR 141 (810)
T ss_dssp TTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEE--CSCCCCBCTTTCCBCCTTCEEETTTTEEECTTTC
T ss_pred CCEEEECCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCEECCCEEEECCCCEEECCCCC
T ss_conf 82463214479999999727998599996177666678888703--8999973698558806825993799879855789
Q ss_pred CCCCCCHHHHC----CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCH---HHHHHHHHHHHHHHHH
Q ss_conf 99789913220----2479768553333228999428998654589995799999788894---6899999999999970
Q 006547 78 SLNGLSSQAIA----RYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSE---EFLELTRSALQAALEA 150 (641)
Q Consensus 78 ~~N~~p~~~~~----~~~~~~~~PEL~~~tve~~~p~~y~~~~~~~~~p~~vFvID~s~~~---~~l~~~~~~l~~~l~~ 150 (641)
+.|++|++|+. ...++.+||||+++||||++|++|+.+ ++.||+|+||||+|.++ |.+++++++|+.+|+.
T Consensus 142 ~~N~~P~~y~~~~~~~~~d~~~RpEL~~~tvEy~~p~~y~~~--~p~pp~yvFvIDvs~~av~~g~l~~~~~si~~~L~~ 219 (810)
T 1pcx_A 142 LANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLR--QPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDS 219 (810)
T ss_dssp CEEECCGGGGC-----CCCGGGSHHHHCSEEEEECCGGGCSS--CCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTT
T ss_pred CCCCCCHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCHHCCC--CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 858996665145446856401274225763999827021147--999868999998976887612999999999999985
Q ss_pred CCC---CCEEEEEEECCEEEEEECCCCCC-------CEEEEEECCCCCCCCCHHHHCC-CCC-CCCCCCHHHHHHHHHHH
Q ss_conf 999---96999986163389997149966-------1124750799885430001002-654-65643557669999999
Q 006547 151 VPS---GALFGLATFSHKIGLYDVQGAIP-------VVKNVFIPSDTEDTLSLELEDV-MPL-SQFLAPVETFKENITSA 218 (641)
Q Consensus 151 l~~---~~~vglItf~~~V~~~~l~~~~~-------~~~~v~~~~~~~~~~~~dl~d~-~p~-~~~l~~~~e~~~~i~~l 218 (641)
||+ +++|||||||+.||||+++.... ++++ .++.|++|+ +|. ++||++++|+++.|+++
T Consensus 220 Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~~~q~~m---------lvv~dl~d~f~P~~~~~Lv~l~e~~~~i~~l 290 (810)
T 1pcx_A 220 IPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINM---------MDIADLEEPFLPRPNSMVVSLKACRQNIETL 290 (810)
T ss_dssp SCCTTSCCEEEEEEESSSEEEEECCCGGGC-------CEE---------ECCCCTTCC-----TTTSEETTTTHHHHHHH
T ss_pred CCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCHHH---------CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 7777877379999989879999567655676442026121---------0335600036777301166589999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97606898642234555677775568763689999999964100389753116999833899999975435656674469
Q 006547 219 LETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYAS 298 (641)
Q Consensus 219 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gkIi~F~~g~pt~GpG~i~~~~~~~~~~~ 298 (641)
|++|+++++.. +++.+|+|+||++|..+|+..| |||++|++|+||+|||+|+.++++++
T Consensus 291 L~~L~~~~~~~------------~~~~~a~G~AL~~A~~lL~~~G------GrI~~F~sg~pt~GpG~l~~r~~~~~--- 349 (810)
T 1pcx_A 291 LTKIPQIFQSN------------LITNFALGPALKSAYHLIGGVG------GKIIVVSGTLPNLGIGKLQRRNESGV--- 349 (810)
T ss_dssp HHHHHHHTTTC------------CCCCCCHHHHHHHHHHHHTTTC------EEEEEEESSCCCSSTTCCCC---------
T ss_pred HHHHHHHCCCC------------CCCCCCHHHHHHHHHHHHHHCC------CEEEEEECCCCCCCCCCCCCCCCCCC---
T ss_conf 98543430578------------8887518999999999987429------88999956799778876666531001---
Q ss_pred CCCCHHHC-CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHCCCCCCCCCCEEEEEECCCCCC------CHHHHHH
Q ss_conf 88510001-5987406999999999883718889441599547120100113551089995789978------4148999
Q 006547 299 KGEDADRA-LLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDS------TLPQDIY 371 (641)
Q Consensus 299 ~~~~~e~~-~~~~~~~fY~~la~~~~~~~isvDif~~~~~~~~i~~l~~l~~~TGG~i~~y~~~~~~------~l~~dl~ 371 (641)
+++++|+. +++++.+||++||.+|+++||+||+|+++.+|+|+++|+.+++.|||.+++|++|+.. +|..|+.
T Consensus 350 ~~~~ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y~~F~~~~~~d~~~f~~dl~ 429 (810)
T 1pcx_A 350 VNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFA 429 (810)
T ss_dssp --------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEETCCTTSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 68631012313621699999999999779389999816876585999877753796799828975123677999999999
Q ss_pred HHHCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 98225853112899965899123245522545999876301320599840799999843777777899976799988035
Q 006547 372 RMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARHTSEQPMLQIAFQYT 451 (641)
Q Consensus 372 ~~l~~~~~~~a~~rvR~S~gl~i~~~~G~~~~~~~~~~~~~~~~~~~~~s~~~~~e~~~~~~l~~~~~~~~~iQ~a~lYt 451 (641)
+.+++++||+|+||||||+|++|+++|||++.++ .+.|.++.+++++|++|+|++++ ++. ...+|||+|++||
T Consensus 430 ~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~--~~~~~l~~~~~d~s~~v~f~~~~--~l~---~~~~~~Q~allYt 502 (810)
T 1pcx_A 430 KHISMDFCMETVMRARGSTGLRMSRFYGHFFNRS--SDLCAFSTMPRDQSYLFEVNVDE--SIM---ADYCYVQVAVLLS 502 (810)
T ss_dssp HHHHCCCCEEEEEEEEECTTEEEEEEESSSBCSS--SSEEEESSCCSSCCEEEEEEECS--CCC---SSEEEEEEEEEEE
T ss_pred HHHHHHCCEEEEEEEECCCCEEEEEEECCCCCCC--CCCEEEECCCCCCEEEEEEEECC--CCC---CCCEEEEEEEEEE
T ss_conf 8765420302799998079807987446725467--67668305798877999999656--778---8867999999888
Q ss_pred ECCCCCCCCH------------HHH-------------HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 3166533311------------258-------------999999940697999999999999999999997632025689
Q 006547 452 VVVPPEELSS------------EGL-------------GSVILASLEQGVREGRMLLHDWLVILTAQYNEAFKLVQHNIG 506 (641)
Q Consensus 452 ~~~g~~~~~~------------~~~-------------~~~~~~~~~~~~~~~r~~l~~~l~~~l~~yr~~~~~~~~~~~ 506 (641)
+..|+|++|+ +++ +.++.++.++++.++|+|++++++++++.||+.+++. +.
T Consensus 503 ~~~G~RRiRV~T~~~~vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~~~d~r~~l~~~li~il~~Yrk~~~~~--~~- 579 (810)
T 1pcx_A 503 LNNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVS--NT- 579 (810)
T ss_dssp CTTSCEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred CCCCCEEEEEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC--CC-
T ss_conf 699978999991375566889999973599999999999999876208999999999999999999986425445--67-
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCEEEECCCCCC-C-
Q ss_conf 97555431122476201208899999813822345899999149999999990599464463114422860169999-8-
Q 006547 507 NSVTSQIDVEFLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSSLQRAVYPLLTSYSTPDKQ-A- 584 (641)
Q Consensus 507 ~~~~~ql~l~f~lp~~lk~lP~~~~~L~Ks~~l~~~~~~~s~D~r~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~-~- 584 (641)
.+|- +|.||++||+||+|||+|+||++|+ ++. +++|||+|++++++++++..++.|+||+||++|++.++ +
T Consensus 580 ---~~~~--~l~lp~~lkllP~~~~~L~ks~~l~-~~~-~p~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~g~ 652 (810)
T 1pcx_A 580 ---AGGA--PLRLCANLRMFPLLMHSLTKHMAFR-SGI-VPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGL 652 (810)
T ss_dssp ---CCSS--CCEEEGGGTTHHHHHHHHHTSTTTC-SSC-CCHHHHHHHHHHHHHSCHHHHHHHHSCEEEECTTCCSSTTS
T ss_pred ---CCCC--CCCCCHHHHHHHHHHHHHHCCHHCC-CCC-CCCCHHHHHHHHHHCCCHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf ---7775--3216778999999999986164107-999-89139999999998599999987416778980367501266
Q ss_pred --------------CCCCCCCHHHHCCCCCCEEEEECCCEEEEEECCCCCCCC
Q ss_conf --------------885566223230479948998279499999849999999
Q 006547 585 --------------FPRHSLSRAALITSGSPIFLLDAFTTIIVFYSSTADPTL 623 (641)
Q Consensus 585 --------------~~~~~L~~~~~~~~~~~iyLlD~~~~i~i~~G~~~~~~~ 623 (641)
+|.++.+++.. ++++|+||||+|..+++|+|++++|++
T Consensus 653 ~~~~~~~~~~~~~~~P~~l~Ls~~~-l~~~g~yLld~G~~i~lwvg~~~~~~l 704 (810)
T 1pcx_A 653 PVQTEDGEATGTIVLPQPINATSSL-FERYGLYLIDNGNELFLWMGGDAVPAL 704 (810)
T ss_dssp BC--------CCBCCCCBCCSSTTS-CCTTCEEEEECSSEEEEEECTTCCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHH-HCCCCEEEEECCCEEEEEECCCCCHHH
T ss_conf 5334455555653568742687998-276988999889899999689999799
No 6
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=1.00 E-value=1 Score=929.23 Aligned_cols=593 Identities=24% Similarity=0.353 Sum_probs=500.7
Q ss_pred CEECCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC--CCEEEECCCEEEC--CEEEECCCC
Q ss_conf 010335867999788883399726598558878989999934679999887878--7703515624536--445965799
Q 006547 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCEN--CYAYFNTYCELEQ--WAWTCSLCG 77 (641)
Q Consensus 2 ~iR~T~~~~P~~~~~~~~~~lPlg~~v~Pf~~~~~~~~~~~~~~~~~~p~RC~~--C~ayiNp~~~~~~--~~w~C~lC~ 77 (641)
|||+|||+||.+++++++++||||++|+||++..+ +|++. ++|+||++ ||||+||||+|+. ++|+||||+
T Consensus 11 ~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~~---~p~v~---~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~ 84 (768)
T 1m2o_A 11 GVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDE---LNVAP---YNPVVCSGPHCKSILNPYCVIDPRNSSWSCPICN 84 (768)
T ss_dssp SEEESBSEEESSHHHHHHTCSCSEEEECTTCCCTT---CCEEC---SCCCBCCSTTTCCBCCTTSCEETTTTEECCTTTC
T ss_pred CEEEEECCCCCCHHHHHCCCCCEEEEEEECCCCCC---CCCCC---CCCCCCCCCCCCEEECCCEEEECCCCEEECCCCC
T ss_conf 16714136889978972677776899974887888---98578---9997548999871878834880899989843689
Q ss_pred CCCCCCHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 99789913220247976855333322899942899865458999579999978889468999999999999709999699
Q 006547 78 SLNGLSSQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALF 157 (641)
Q Consensus 78 ~~N~~p~~~~~~~~~~~~~PEL~~~tve~~~p~~y~~~~~~~~~p~~vFvID~s~~~~~l~~~~~~l~~~l~~l~~~~~v 157 (641)
+.|++|++|. ..++.+.||||+++||||++|+. ++.||+|+||||+|.++.++++++++|+++|+.||++++|
T Consensus 85 ~~N~~P~~y~-~~~~~~~~pEL~~~tvEy~~p~~------~~~pp~~vFvIDvs~~~~~l~~l~~sl~~~L~~Lp~~~~V 157 (768)
T 1m2o_A 85 SRNHLPPQYT-NLSQENMPLELQSTTIEYITNKP------VTVPPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALI 157 (768)
T ss_dssp CCCBCCGGGC-C---CCCCGGGTCSEEEEECSCC------CCSCCEEEEEEECCSCHHHHHHHHHHHHHHHHTSCTTCEE
T ss_pred CCCCCCHHHC-CCCCCCCCHHHCCCCEEEECCCC------CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 8799986772-57845579122269789987889------9999889999989868899999999999999848998779
Q ss_pred EEEEECCEEEEEECCCCCCCEEEEEECCCCCC-------CC--CH-----HH-----HC-CCC----CCCCCCCHHHHHH
Q ss_conf 99861633899971499661124750799885-------43--00-----01-----00-265----4656435576699
Q 006547 158 GLATFSHKIGLYDVQGAIPVVKNVFIPSDTED-------TL--SL-----EL-----ED-VMP----LSQFLAPVETFKE 213 (641)
Q Consensus 158 glItf~~~V~~~~l~~~~~~~~~v~~~~~~~~-------~~--~~-----dl-----~d-~~p----~~~~l~~~~e~~~ 213 (641)
||||||+.||||+++.......+||.+ +.+. .+ +. ++ +| +.| .++||+|++|+++
T Consensus 158 GlITf~~~V~~y~l~~~~~~~~~V~~g-~k~~~~~q~~~~l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~e~~~ 236 (768)
T 1m2o_A 158 GLITYGNVVQLHDLSSETIDRCNVFRG-DREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEF 236 (768)
T ss_dssp EEEEESSEEEECCCSSSSSEEEEEEET-TSCCCHHHHHHHHHSCCCC---------------CCSSSGGGGSEEHHHHHH
T ss_pred EEEEECCEEEEEECCCCCCCCEEEECC-CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHH
T ss_conf 999979879999788887751256348-7546688999997501555567766544444566666772012120899999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99999976068986422345556777755687636899999999641003897531169998338999999754356566
Q 006547 214 NITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYG 293 (641)
Q Consensus 214 ~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gkIi~F~~g~pt~GpG~i~~~~~~ 293 (641)
.|+++|++|+++ .|...++ +++.||+|+||++|..+|+...++. ||||++|++|+||.|||+|+.++++
T Consensus 237 ~i~~lL~~L~~~-~~~~~~~--------~~~~~~~G~Al~~A~~ll~~~~~~~--GGrI~~F~sg~pt~GpG~l~~r~~~ 305 (768)
T 1m2o_A 237 KLNQLLENLSPD-QWSVPAG--------HRPLRATGSALNIASLLLQGCYKNI--PARIILFASGPGTVAPGLIVNSELK 305 (768)
T ss_dssp HHHHHHHTCCCS-CSCCCTT--------BCCCCCHHHHHHHHHHHHHHHCTTS--CCEEEEEESSCCCSSSSCCSCSBTT
T ss_pred HHHHHHHHCCCC-CCCCCCC--------CCCCCCHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 999999865325-5666788--------8776207999999999974014778--7289999678997788646465443
Q ss_pred CCCCCCC-CCHH-HCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHCCCCCCCCCCEEEEEECCCCCCCHHHHHH
Q ss_conf 7446988-5100-0159874069999999998837188894415995471201001135510899957899784148999
Q 006547 294 EQYASKG-EDAD-RALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIY 371 (641)
Q Consensus 294 ~~~~~~~-~~~e-~~~~~~~~~fY~~la~~~~~~~isvDif~~~~~~~~i~~l~~l~~~TGG~i~~y~~~~~~~l~~dl~ 371 (641)
+.+|++. +++| +++++++.+||++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.++|.++++
T Consensus 306 ~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~~~~~~~l~ 385 (768)
T 1m2o_A 306 DPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYL 385 (768)
T ss_dssp SCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
T ss_conf 33444346543201213715899999999999779689999815876685877667654795599738986688999999
Q ss_pred HHHCC------CCCCEEEEEEECCCCCEEEEEEECCCCCCC--------------CCCCEEEEECCCCCEEEEEEEEECC
Q ss_conf 98225------853112899965899123245522545999--------------8763013205998407999998437
Q 006547 372 RMLSR------PYAFNCIMRLRTSSEFKPGHSYGHFFPDPQ--------------YENVQHIICCDSYATYAYDFDFANA 431 (641)
Q Consensus 372 ~~l~~------~~~~~a~~rvR~S~gl~i~~~~G~~~~~~~--------------~~~~~~~~~~~~~~s~~~~~e~~~~ 431 (641)
|.+++ ++||+|+||||||+|++|++++||++..++ ..+.|+++.+++++|++++|++++.
T Consensus 386 r~l~~~~~~~~~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~~vsd~~ig~~~t~~~~l~~~~~d~t~~v~f~~~~~ 465 (768)
T 1m2o_A 386 RLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEIANT 465 (768)
T ss_dssp HTTCBCTTSSBSCEEEEEEEEEECTTEEEEEEESSCEECCSCCCSCBCSSCSSBCSCSEEEEEEECTTCCEEEEEEECCC
T ss_pred HHHHHCCCCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCEEEEEEEECCC
T ss_conf 99843014555457789999996699069876537414665556665754424688752786157988779999996365
Q ss_pred CCC-------CCC--CCCCCEEEEEEEEEECCCCCCCCH-------------HHHHH-------------HHHHHHHCCH
Q ss_conf 777-------778--999767999880353166533311-------------25899-------------9999940697
Q 006547 432 AGF-------ARH--TSEQPMLQIAFQYTVVVPPEELSS-------------EGLGS-------------VILASLEQGV 476 (641)
Q Consensus 432 ~~l-------~~~--~~~~~~iQ~a~lYt~~~g~~~~~~-------------~~~~~-------------~~~~~~~~~~ 476 (641)
... +.. ....+|||+|++||+..|+|++|+ +++++ ++.++.++.+
T Consensus 466 ~~~~~~~~~~~l~~~~~~~~~iQ~a~lYt~~~G~rriRV~T~~~~~t~~~~~~v~~~~Dqea~~~llar~av~~~~~~~~ 545 (768)
T 1m2o_A 466 AANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLPFGTPAIAASFDQEAAAVLMARIAVHKAETDDG 545 (768)
T ss_dssp -----------------CEEEEEEEEEEEETTTEEEEEEEEEEEEEECTTCHHHHHTBCHHHHHHHHHHHHHHHTTSSCH
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCH
T ss_conf 56433333345565678707999999878699988999995234455755899997449999999999999998731989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99999999999999999999763202568997555431122476201208899999813822345899999149999999
Q 006547 477 REGRMLLHDWLVILTAQYNEAFKLVQHNIGNSVTSQIDVEFLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQC 556 (641)
Q Consensus 477 ~~~r~~l~~~l~~~l~~yr~~~~~~~~~~~~~~~~ql~l~f~lp~~lk~lP~~~~~L~Ks~~l~~~~~~~s~D~r~~~~~ 556 (641)
.++|+||++++++++..|..|.+ +.++ +|.||++||+||+|||+|+||++|+.++ ++||||+|+++
T Consensus 546 ~d~r~~l~~~li~l~~~~~~Yrk----~~~~--------~l~lp~~lk~lP~~~~~L~ks~~l~~~~--~spDer~~~~~ 611 (768)
T 1m2o_A 546 ADVIRWLDRTLIKLCQKYADYNK----DDPQ--------SFRLAPNFSLYPQFTYYLRRSQFLSVFN--NSPDETAFYRH 611 (768)
T ss_dssp HHHHHHHHHHHHHHHHHHSBCCT----TCGG--------GCBCCTTTTHHHHHHHHHHHSTTTCCTT--SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC----CCCC--------CCCCCHHHHHHHHHHHHHHCCCCCCCCC--CCHHHHHHHHH
T ss_conf 99999999999999999998746----7962--------1326777999999999985662457999--89059999999
Q ss_pred HHCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCEEEEEECCCCCC--CCCCC-CCCCCHH
Q ss_conf 99059946446311442286016999988855662232304799489982794999998499999--99899-9998346
Q 006547 557 LFSALEPSSLQRAVYPLLTSYSTPDKQAFPRHSLSRAALITSGSPIFLLDAFTTIIVFYSSTADP--TLPFP-PPQDCKF 633 (641)
Q Consensus 557 ~l~~~~~~~~~~~iyP~L~~~~~~~~~~~~~~~L~~~~~~~~~~~iyLlD~~~~i~i~~G~~~~~--~~~~~-~~~~~~~ 633 (641)
.++++++.+++.|+||+||++|..+ .|.++++++.+ +.+++|||||+|++++||+|+++++ +..|+ +|..+.+
T Consensus 612 ~l~~~~~~~~l~~iyP~L~~~~~~~---~P~~v~Ls~~~-l~~~gi~LLD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~ 687 (768)
T 1m2o_A 612 IFTREDTTNSLIMIQPTLTSFSMED---DPQPVLLDSIS-VKPNTILLLDTFFFILIYHGEQIAQWRKAGYQDDPQYADF 687 (768)
T ss_dssp HHTTSCHHHHHHHHSCEEEEECSSS---CCEECCSBGGG-CCTTCEEEEECSSEEEEEECHHHHHHHHHTGGGSTTCHHH
T ss_pred HHHCCCHHHHHHHHCCEEEEECCCC---CCCCEECCHHH-CCCCCEEEEECCCEEEEEECCCCHHHHHCCCCCCCHHHHH
T ss_conf 9973999999886578489854889---77636486998-5789889998898999998875217874656788336668
Q ss_pred HHHH
Q ss_conf 7763
Q 006547 634 SLIS 637 (641)
Q Consensus 634 ~~~~ 637 (641)
+.++
T Consensus 688 ~~ll 691 (768)
T 1m2o_A 688 KALL 691 (768)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9886
No 7
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=1.00 E-value=1 Score=921.15 Aligned_cols=591 Identities=21% Similarity=0.291 Sum_probs=505.2
Q ss_pred CEECCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC--CCEEEECCCEEEC--CEEEECCCC
Q ss_conf 010335867999788883399726598558878989999934679999887878--7703515624536--445965799
Q 006547 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCEN--CYAYFNTYCELEQ--WAWTCSLCG 77 (641)
Q Consensus 2 ~iR~T~~~~P~~~~~~~~~~lPlg~~v~Pf~~~~~~~~~~~~~~~~~~p~RC~~--C~ayiNp~~~~~~--~~w~C~lC~ 77 (641)
|||+|||+||.+++++++++||||++|+||++..+ +|++. ++|+||++ ||||+||||+|+. ++|+||||+
T Consensus 20 ~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~~---~p~v~---~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~ 93 (769)
T 2nut_A 20 GVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPD---LPPIQ---YEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCY 93 (769)
T ss_dssp SEEESBSSBCSSHHHHTTCSSCCEEEECTTCCCSC---CCCBC---SCCCBCSSTTCCCBCCTTSEEETTTTEEECSSSC
T ss_pred CCCCEECCCCCCHHHHHCCCCCEEEEEEECCCCCC---CCCCC---CCCCCCCCCCCCEEECCCEEEECCCCEEECCCCC
T ss_conf 42053046789868873256776999961888888---98588---8997679999873978845993799979913899
Q ss_pred CCCCCCHHHHCCCCCCCCCCCC--CCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9978991322024797685533--33228999428998654589995799999788894689999999999997099996
Q 006547 78 SLNGLSSQAIARYTHPQSCAEM--ISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGA 155 (641)
Q Consensus 78 ~~N~~p~~~~~~~~~~~~~PEL--~~~tve~~~p~~y~~~~~~~~~p~~vFvID~s~~~~~l~~~~~~l~~~l~~l~~~~ 155 (641)
..|++|++|+ .....+.+||| .++||||++|++| +.||+|+||||+|.++.++++++++|+.+|+.||+++
T Consensus 94 ~~N~~P~~Y~-~~~~~~~~pEL~p~~~tvEy~~~~~~------p~pp~~vFvIDvS~~a~~l~~l~~si~~~L~~Lp~~~ 166 (769)
T 2nut_A 94 QRNQFPPSYA-GISELNQPAELLPQFSSIEYVVLRGP------QMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTA 166 (769)
T ss_dssp CEEECCGGGT-TCBTTBCCGGGSGGGSSEEEEECSSC------CCCCEEEEEEECCSCHHHHHHHHHHHHHHHTTSCTTC
T ss_pred CCCCCCHHHC-CCCCCCCCHHHCCCCCCEEEECCCCC------CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8789986772-57745689656378986798736888------9997899999887558899999999999998489984
Q ss_pred EEEEEEECCEEEEEECCCCCCCEEEEEECCCCCC--------CCCHH----H-----HCC--CCCCCCCCCHHHHHHHHH
Q ss_conf 9999861633899971499661124750799885--------43000----1-----002--654656435576699999
Q 006547 156 LFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTED--------TLSLE----L-----EDV--MPLSQFLAPVETFKENIT 216 (641)
Q Consensus 156 ~vglItf~~~V~~~~l~~~~~~~~~v~~~~~~~~--------~~~~d----l-----~d~--~p~~~~l~~~~e~~~~i~ 216 (641)
+|||||||+.||||+++.....+++||.|. .+. .++.| + +|+ +|.++||+|++|+++.|+
T Consensus 167 ~VGlITf~~~v~~y~l~~~~~~~~~vf~G~-k~~~~~q~~~ml~v~d~~~~~~~~~~~~~f~~p~~~~lv~~~e~~~~i~ 245 (769)
T 2nut_A 167 LVGLITFGRMVQVHELGCEGISKSYVFRGT-KDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLT 245 (769)
T ss_dssp EEEEEEESSEEEEEESSCCSSCEEEEEETT-SCCCSHHHHHHHC-------------------CCCSSSEEHHHHHHHHH
T ss_pred EEEEEEECCEEEEEECCCCCCCCCEEECCC-CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHH
T ss_conf 699999687799996788877630240587-6565778999858787665544555565677761010221899999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 99976068986422345556777755687636899999999641003897531169998338999999754356566744
Q 006547 217 SALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQY 296 (641)
Q Consensus 217 ~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gkIi~F~~g~pt~GpG~i~~~~~~~~~ 296 (641)
++|++|++. .|...+. +++.+|+|+||++|..+|+...++. ||||++|++|+||.|||+|+.+++++.+
T Consensus 246 ~lLe~L~~~-~~~~~~~--------~~~~~a~G~Al~~A~~lL~~~~~~~--GGrI~~F~sg~pt~GpG~l~~r~~~~~~ 314 (769)
T 2nut_A 246 DLLGELQRD-PWPVPQG--------KRPLRSSGVALSIAVGLLECTFPNT--GARIMMFIGGPATQGPGMVVGDELKTPI 314 (769)
T ss_dssp HHHHHCCCC-SSCCCTT--------BCCCCCHHHHHHHHHHHHHHHSCSS--CCEEEEEESSCCCSSSSCCSCSBTTSCC
T ss_pred HHHHHCCCC-CCCCCCC--------CCCCCCHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 999865324-4565678--------8876306899999999974113678--8589999678997788777574432223
Q ss_pred CCCC-CCHH-HCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 6988-5100-0159874069999999998837188894415995471201001135510899957899784148999982
Q 006547 297 ASKG-EDAD-RALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRML 374 (641)
Q Consensus 297 ~~~~-~~~e-~~~~~~~~~fY~~la~~~~~~~isvDif~~~~~~~~i~~l~~l~~~TGG~i~~y~~~~~~~l~~dl~~~l 374 (641)
|++. +++| +++++++.+||+++|.+|+++||+||+|+++.+++|+++|+.|++.|||.+++|++|+.+++.++++|.+
T Consensus 315 rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~~F~~~~~~~~l~~~~ 394 (769)
T 2nut_A 315 RSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVF 394 (769)
T ss_dssp CCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 44356642123432505899999999999779699999626776680888777663795599838984466899999998
Q ss_pred CC------CCCCEEEEEEECCCCCEEEEEEECCCCCCC-------------CCCCEEEEECCCCCEEEEEEEEECCCC--
Q ss_conf 25------853112899965899123245522545999-------------876301320599840799999843777--
Q 006547 375 SR------PYAFNCIMRLRTSSEFKPGHSYGHFFPDPQ-------------YENVQHIICCDSYATYAYDFDFANAAG-- 433 (641)
Q Consensus 375 ~~------~~~~~a~~rvR~S~gl~i~~~~G~~~~~~~-------------~~~~~~~~~~~~~~s~~~~~e~~~~~~-- 433 (641)
++ ++||+|+||||||+|++|++++||++..++ ..+.|+++.+++++|++++|++++...
T Consensus 395 ~~~~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l~~~~~d~s~~v~f~~~~~~~~~ 474 (769)
T 2nut_A 395 TKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAP 474 (769)
T ss_dssp CBCTTSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEEEEECTTCCEEEEEEEC------
T ss_pred HHHCCCCCCEEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCEEEEEEEECCCCCCC
T ss_conf 65304564357779999996698279864436303565567656412136787507840679887799999964755666
Q ss_pred CCCCCCCCCEEEEEEEEEECCCCCCCCH---------------HHHHH-------------HHHHHHHCCHHHHHHHHHH
Q ss_conf 7778999767999880353166533311---------------25899-------------9999940697999999999
Q 006547 434 FARHTSEQPMLQIAFQYTVVVPPEELSS---------------EGLGS-------------VILASLEQGVREGRMLLHD 485 (641)
Q Consensus 434 l~~~~~~~~~iQ~a~lYt~~~g~~~~~~---------------~~~~~-------------~~~~~~~~~~~~~r~~l~~ 485 (641)
++ ....+|||+|++||+..|+|++|+ +++++ ++.++.++.+.++|+|+++
T Consensus 475 l~--~~~~~~~Q~a~lYt~~~G~rRiRV~T~~~~~t~~~~~~~~v~~~~Dqea~~~llar~a~~~~~~~~~~d~~~~ld~ 552 (769)
T 2nut_A 475 IP--QGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGPDVLRWLDR 552 (769)
T ss_dssp ------CCEEEEEEEEEEETTSCEEEEEEEEEECBCCGGGHHHHHHHTBCHHHHHHHHHHHHHHHHTTC---CHHHHHHH
T ss_pred CC--CCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 67--8872899999999979998899999432113577543799997549999999999999987512878999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHH
Q ss_conf 99999999999763202568997555431122476201208899999813822345899999149999999990599464
Q 006547 486 WLVILTAQYNEAFKLVQHNIGNSVTSQIDVEFLQCPQLQRLPRLVFALLRNPLLRFHEEGVHPDYRIYLQCLFSALEPSS 565 (641)
Q Consensus 486 ~l~~~l~~yr~~~~~~~~~~~~~~~~ql~l~f~lp~~lk~lP~~~~~L~Ks~~l~~~~~~~s~D~r~~~~~~l~~~~~~~ 565 (641)
++++++..|..|.+ ++++ +|.||++||+||+|||+|+||++|+.++ +++|||+|+++.++++++.+
T Consensus 553 ~li~l~~~~~~Yrk----~~~~--------sl~lp~~lkllP~~~~~L~ks~~l~~~~--~spDer~~~~~~l~~~~~~~ 618 (769)
T 2nut_A 553 QLIRLCQKFGEYHK----DDPS--------SFRFSETFSLYPQFMFHLRRSSFLQVFN--NSPDESSYYRHHFMRQDLTQ 618 (769)
T ss_dssp HHHHHHHHHCBCCT----TCGG--------GCBCCTTTTTHHHHHHHHHHSTTTCCTT--SCHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHC----CCCC--------CCCCCHHHHHHHHHHHHHHCCCCCCCCC--CCCCHHHHHHHHHHCCCHHH
T ss_conf 99999999999857----6963--------3306677999999999985641027899--88229999999997599999
Q ss_pred HHHHHCCCEEEECCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCEEEEEECCCCCC--CCCCC-CCCCCHHHHHH
Q ss_conf 46311442286016999988855662232304799489982794999998499999--99899-99983467763
Q 006547 566 LQRAVYPLLTSYSTPDKQAFPRHSLSRAALITSGSPIFLLDAFTTIIVFYSSTADP--TLPFP-PPQDCKFSLIS 637 (641)
Q Consensus 566 ~~~~iyP~L~~~~~~~~~~~~~~~L~~~~~~~~~~~iyLlD~~~~i~i~~G~~~~~--~~~~~-~~~~~~~~~~~ 637 (641)
++.|+||+||++|..+ .|.++++++.+ +.+++|||||+|++++||+|+++++ +..|+ +|..+.+++++
T Consensus 619 ~~~~iyP~L~~~~~~~---~P~~v~ls~~~-l~~~gi~LLD~g~~i~i~~G~~v~~w~~~~~~~~p~~~~~~~~l 689 (769)
T 2nut_A 619 SLIMIQPILYAYSFSG---PPEPVLLDSSS-ILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLL 689 (769)
T ss_dssp HHHHHSCEEEEECSSS---SCEECCSSGGG-CCTTCEEEEECSSEEEEEECHHHHHHHHHTTTTSGGGHHHHHHH
T ss_pred HHHHHCCEEEECCCCC---CCCCEECCHHH-CCCCCEEEEECCCEEEEEECCCCHHHHHCCCCCCCHHHHHHHHH
T ss_conf 9875467788636889---89754187998-16797899978989999977752678727998882156699999
No 8
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=1.00 E-value=1 Score=94.00 Aligned_cols=41 Identities=22% Similarity=0.557 Sum_probs=37.5
Q ss_pred CCCCCCCCC--CCEEEECCCEEEC--CEEEECCCCCCCCCCHHHH
Q ss_conf 999887878--7703515624536--4459657999978991322
Q 006547 47 GHMLPRCEN--CYAYFNTYCELEQ--WAWTCSLCGSLNGLSSQAI 87 (641)
Q Consensus 47 ~~~p~RC~~--C~ayiNp~~~~~~--~~w~C~lC~~~N~~p~~~~ 87 (641)
.++|+||++ |+|||||||+|+. ++|+||||+..|++|++|+
T Consensus 6 ~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y~ 50 (59)
T 2yrc_A 6 SGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYA 50 (59)
T ss_dssp CCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCCS
T ss_pred CCCCCCCCCCCCCEEECCCEEEECCCCEEECCCCCCCCCCCHHHH
T ss_conf 789960479898729799659878999998416898578997880
No 9
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=1.00 E-value=1 Score=79.99 Aligned_cols=254 Identities=10% Similarity=0.038 Sum_probs=160.9
Q ss_pred CCEEEEEEECCCCHH----HHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCCCCCEEEEEECCCCCCCCCHHHH
Q ss_conf 957999997888946----8999999999999709999699998616338999714996611247507998854300010
Q 006547 121 RPVYVAAVDLSSSEE----FLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELE 196 (641)
Q Consensus 121 ~p~~vFvID~s~~~~----~l~~~~~~l~~~l~~l~~~~~vglItf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~~~dl~ 196 (641)
+.-++|+||+|.++. .++.+++++...++.++++.+||+|+|++.....--... .+.
T Consensus 77 ~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p~t~-------------------~l~ 137 (464)
T 4fx5_A 77 ENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPTGG-------------------QLL 137 (464)
T ss_dssp CEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEESSSS-------------------SCE
T ss_pred CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEECCCC-------------------CCC
T ss_conf 7039999986711488984699999999999972899988999998386079856975-------------------456
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEE
Q ss_conf 02654656435576699999999760689864223455567777556876368999999996410038975311699983
Q 006547 197 DVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFL 276 (641)
Q Consensus 197 d~~p~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gkIi~F~ 276 (641)
+. -...+..+...|+.|... +++.++.||..|..++....+. ...|++++
T Consensus 138 ---~~------~~~~~~~l~~~I~~L~~~------------------GgT~l~~aL~~A~~~l~~~~~~---~~~IILLT 187 (464)
T 4fx5_A 138 ---RA------DYQSRAAAKEAVGRLHAN------------------GGTAMGRWLAQAGRIFDTAPSA---IKHAILLT 187 (464)
T ss_dssp ---EC------SHHHHHHHHHHHHTCCCC------------------SCCCHHHHHHHHHHHHTTCTTS---EEEEEEEE
T ss_pred ---CC------CHHHHHHHHHHHHCCCCC------------------CCCCHHHHHHHHHHHHHCCCCC---CCEEEEEC
T ss_conf ---48------877899999999708999------------------9996899999999987528987---78899995
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHCCCCCCCCCCEEEE
Q ss_conf 38999999754356566744698851000159874069999999998837188894415995471201001135510899
Q 006547 277 SGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLF 356 (641)
Q Consensus 277 ~g~pt~GpG~i~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvDif~~~~~~~~i~~l~~l~~~TGG~i~ 356 (641)
.|.++.+.. ... . -+.+....++.+..+.++. ..+...|..++..|||..+
T Consensus 188 DG~~~~~~~--------------------------~~l-~-~~~~a~~~~i~i~tiGiG~-~~d~~~L~~IA~~tgG~~~ 238 (464)
T 4fx5_A 188 DGKDESETP--------------------------ADL-A-RAIQSSIGNFTADCRGIGE-DWEPKELRKIADALLGTVG 238 (464)
T ss_dssp SSCCTTSCH--------------------------HHH-H-HHHHHHTTTCEEEEEEESS-SSCHHHHHHHHHHTTCCEE
T ss_pred CCCCCCCCH--------------------------HHH-H-HHHHHHCCCCEEEEEEECC-CCCHHHHHHHHHHCCCEEE
T ss_conf 899999984--------------------------999-9-9999843897599999698-5289999999981798799
Q ss_pred EECCCCC-CCHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEE--C----CCCCCCC-----CCCEEEEECCCCCEEEE
Q ss_conf 9578997-841489999822585311289996589912324552--2----5459998-----76301320599840799
Q 006547 357 LYSSTDD-STLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYG--H----FFPDPQY-----ENVQHIICCDSYATYAY 424 (641)
Q Consensus 357 ~y~~~~~-~~l~~dl~~~l~~~~~~~a~~rvR~S~gl~i~~~~G--~----~~~~~~~-----~~~~~~~~~~~~~s~~~ 424 (641)
+.++.+. .....++...+.....-++.++++...|..+..+.. + ...+... .....++.+ .+.+-.|
T Consensus 239 ~v~d~~~L~~~f~~i~~~~~s~~~~dv~l~l~~~~g~~v~~v~~v~P~~~~l~~~~~~~~~~~~~~v~lG~l-~~e~r~~ 317 (464)
T 4fx5_A 239 IIRDPATLAEDFREMTAKSMGKEVADVALRLWAPKGATIRYVKQVSPNLADLSGMRVPGDNPLTGDYPTGAW-GAESREY 317 (464)
T ss_dssp EESSGGGHHHHHHHHHHHHHTCCEEEEEEEEECCTTCEEEEEEEEESBCEECGGGCEECSSTTEEEEEEEEE-SSEEEEE
T ss_pred ECCCHHHHHHHHHHHHHHHHCHHEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCC-CCCEEEE
T ss_conf 859989999999999998615104326999994899179999863664344676555678883789989767-7872899
Q ss_pred EEEEECCCCCCCCCCCCCE-EEEEEEEEECCCC
Q ss_conf 9998437777778999767-9998803531665
Q 006547 425 DFDFANAAGFARHTSEQPM-LQIAFQYTVVVPP 456 (641)
Q Consensus 425 ~~e~~~~~~l~~~~~~~~~-iQ~a~lYt~~~g~ 456 (641)
.+++.-+. .+ .+...- .++.+.|....+.
T Consensus 318 lv~l~v~~-~~--~g~~~~~~~v~~~y~~~~~~ 347 (464)
T 4fx5_A 318 HICVEVEP-GN--IGQEKLAGRVQLVAKDAGGA 347 (464)
T ss_dssp EEEEECCC-CC--TTCEEEEEEEEEEEEETTEE
T ss_pred EEEEECCC-CC--CCCEEEEEEEEEEECCCCCC
T ss_conf 99998478-89--88505889999997177766
No 10
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=72.48 Aligned_cols=158 Identities=14% Similarity=0.154 Sum_probs=113.5
Q ss_pred CCCCEEEEEEECCCCHH-------HHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCCCCCEEEEEECCCCCCCC
Q ss_conf 99957999997888946-------89999999999997099996999986163389997149966112475079988543
Q 006547 119 QARPVYVAAVDLSSSEE-------FLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTL 191 (641)
Q Consensus 119 ~~~p~~vFvID~s~~~~-------~l~~~~~~l~~~l~~l~~~~~vglItf~~~V~~~~l~~~~~~~~~v~~~~~~~~~~ 191 (641)
..+.-++|+||+|.+.. .++.+++.+...++.++ +.+||+|+|++..+..-
T Consensus 9 ~~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~~~--------------------- 66 (218)
T 3ibs_A 9 RKGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFTQL--------------------- 66 (218)
T ss_dssp -CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEEEE---------------------
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCEEEEEEECCCCEEEC---------------------
T ss_conf 57886899997986766446896799999999999997398-87499999879954847---------------------
Q ss_pred CHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCE
Q ss_conf 00010026546564355766999999997606898642234555677775568763689999999964100389753116
Q 006547 192 SLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALAR 271 (641)
Q Consensus 192 ~~dl~d~~p~~~~l~~~~e~~~~i~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~ll~~~g~~~~~~gk 271 (641)
++ ......+...++.+.... .+ .+++.++.||..|...+...... ...
T Consensus 67 --~~-------------~~~~~~~~~~l~~l~~~~---~~-----------~g~T~l~~al~~a~~~l~~~~~~---~~~ 114 (218)
T 3ibs_A 67 --PI-------------TSDYISAKMFLESISPSL---IS-----------KQGTAIGEAINLATRSFTPQEGV---GRA 114 (218)
T ss_dssp --EE-------------ESCHHHHHHHHHTCCGGG---CC-----------SCSCCHHHHHHHHHTTSCSCSSC---CEE
T ss_pred --CC-------------CCCHHHHHHHHHHCCCCC---CC-----------CCCCCHHHHHHHHHHHHHHCCCC---CCE
T ss_conf --88-------------789999999998638365---78-----------89971999999999998627788---868
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC--------------
Q ss_conf 999833899999975435656674469885100015987406999999999883718889441599--------------
Q 006547 272 VFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNE-------------- 337 (641)
Q Consensus 272 Ii~F~~g~pt~GpG~i~~~~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvDif~~~~~-------------- 337 (641)
|++++.|.++.| + ..+.+..+.+.+|.|..+.++.+
T Consensus 115 ivllTDG~~~~~-------~-----------------------~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~ 164 (218)
T 3ibs_A 115 IIVITDGENHEG-------G-----------------------AVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYR 164 (218)
T ss_dssp EEEEECCTTCCS-------C-----------------------HHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBC
T ss_pred EEEECCCCCCCC-------C-----------------------HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCEE
T ss_conf 999808898887-------6-----------------------8999999986698899999658988745306987601
Q ss_pred ----------CCCHHCCCCCCCCCCEEEEEECC
Q ss_conf ----------54712010011355108999578
Q 006547 338 ----------YTDLASLKFLSIESGGSLFLYSS 360 (641)
Q Consensus 338 ----------~~~i~~l~~l~~~TGG~i~~y~~ 360 (641)
..+...|..+|..|||..++..+
T Consensus 165 ~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~ 197 (218)
T 3ibs_A 165 RDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDN 197 (218)
T ss_dssp BCTTSCBCEECCCHHHHHHHHHHTEEEEEEECS
T ss_pred ECCCCCEEEECCCHHHHHHHHHHCCCEEEECCC
T ss_conf 769999868628999999999961988998879
Done!