Query 006548
Match_columns 641
No_of_seqs 565 out of 3627
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 00:53:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006548.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006548hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 2.1E-98 5E-103 852.0 53.0 514 103-640 23-544 (613)
2 PLN03211 ABC transporter G-25; 100.0 1.4E-94 3.1E-99 828.4 59.9 514 103-640 37-591 (659)
3 TIGR00955 3a01204 The Eye Pigm 100.0 2.4E-93 5.3E-98 817.1 55.7 500 121-640 36-547 (617)
4 KOG0065 Pleiotropic drug resis 100.0 1.2E-94 2.6E-99 834.5 41.6 509 104-641 786-1311(1391)
5 PLN03140 ABC transporter G fam 100.0 3.6E-92 7.8E-97 861.3 59.3 512 103-641 865-1403(1470)
6 TIGR00956 3a01205 Pleiotropic 100.0 8.4E-92 1.8E-96 860.6 55.5 503 122-640 73-607 (1394)
7 PLN03140 ABC transporter G fam 100.0 2.2E-90 4.7E-95 845.6 55.1 506 121-640 176-724 (1470)
8 TIGR00956 3a01205 Pleiotropic 100.0 2.1E-89 4.5E-94 839.5 58.9 508 105-640 759-1291(1394)
9 KOG0065 Pleiotropic drug resis 100.0 1.2E-81 2.6E-86 726.6 37.6 505 122-640 127-646 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 7E-53 1.5E-57 406.7 24.8 218 105-337 2-225 (240)
11 COG1135 AbcC ABC-type metal io 100.0 5.2E-50 1.1E-54 404.9 22.4 221 106-337 2-231 (339)
12 COG1125 OpuBA ABC-type proline 100.0 2.4E-49 5.2E-54 389.2 22.7 226 106-360 2-235 (309)
13 COG1120 FepC ABC-type cobalami 100.0 4.3E-49 9.3E-54 397.9 22.9 217 105-336 2-227 (258)
14 COG1116 TauB ABC-type nitrate/ 100.0 1.3E-48 2.7E-53 387.7 23.8 204 105-324 3-207 (248)
15 COG1127 Ttg2A ABC-type transpo 100.0 2.7E-48 5.8E-53 380.4 23.6 219 104-337 7-235 (263)
16 COG1131 CcmA ABC-type multidru 100.0 7.8E-48 1.7E-52 402.6 26.7 221 105-340 4-229 (293)
17 COG1136 SalX ABC-type antimicr 100.0 1E-47 2.3E-52 380.7 25.0 209 106-326 2-220 (226)
18 COG3842 PotA ABC-type spermidi 100.0 3.6E-48 7.8E-53 407.2 22.9 219 104-337 4-226 (352)
19 COG3839 MalK ABC-type sugar tr 100.0 1.7E-47 3.7E-52 400.2 25.3 218 105-338 3-224 (338)
20 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2E-47 4.3E-52 384.0 24.5 218 104-337 3-227 (254)
21 COG1118 CysA ABC-type sulfate/ 100.0 1E-47 2.2E-52 387.4 20.4 219 105-338 2-228 (345)
22 COG3638 ABC-type phosphate/pho 100.0 2E-47 4.4E-52 373.2 21.0 220 104-337 2-237 (258)
23 COG1124 DppF ABC-type dipeptid 100.0 1.2E-46 2.6E-51 370.4 23.5 220 104-337 2-231 (252)
24 COG4555 NatA ABC-type Na+ tran 100.0 9.8E-47 2.1E-51 359.2 20.7 218 106-338 2-223 (245)
25 COG1117 PstB ABC-type phosphat 100.0 1.8E-46 3.9E-51 360.7 20.2 222 104-337 6-237 (253)
26 TIGR02314 ABC_MetN D-methionin 100.0 4E-45 8.6E-50 389.3 28.7 219 106-336 2-229 (343)
27 PRK11650 ugpC glycerol-3-phosp 100.0 5.3E-45 1.1E-49 390.9 29.2 218 105-337 3-224 (356)
28 PRK13537 nodulation ABC transp 100.0 4.4E-45 9.5E-50 384.8 27.9 217 105-337 7-227 (306)
29 cd03261 ABC_Org_Solvent_Resist 100.0 4.8E-45 1E-49 370.5 26.8 216 106-336 1-225 (235)
30 COG1123 ATPase components of v 100.0 3.2E-45 6.8E-50 400.0 26.5 268 60-337 233-519 (539)
31 TIGR03265 PhnT2 putative 2-ami 100.0 7.5E-45 1.6E-49 389.3 28.7 217 105-337 4-224 (353)
32 PRK11432 fbpC ferric transport 100.0 1.1E-44 2.4E-49 387.5 28.8 217 105-337 6-226 (351)
33 COG2884 FtsE Predicted ATPase 100.0 2.2E-45 4.8E-50 347.3 19.4 211 106-331 2-220 (223)
34 COG3840 ThiQ ABC-type thiamine 100.0 2.5E-45 5.5E-50 344.2 19.2 214 106-337 2-219 (231)
35 TIGR03258 PhnT 2-aminoethylpho 100.0 2.3E-44 5.1E-49 386.3 28.7 219 105-337 5-228 (362)
36 PRK10851 sulfate/thiosulfate t 100.0 2.7E-44 5.9E-49 385.0 28.9 218 105-337 2-226 (353)
37 PRK13536 nodulation factor exp 100.0 4E-44 8.6E-49 381.9 29.0 219 104-338 40-262 (340)
38 PRK09452 potA putrescine/sperm 100.0 4.4E-44 9.5E-49 385.6 29.3 218 104-337 13-234 (375)
39 cd03296 ABC_CysA_sulfate_impor 100.0 1E-43 2.2E-48 361.8 28.3 217 105-336 2-225 (239)
40 cd03219 ABC_Mj1267_LivG_branch 100.0 4.9E-44 1.1E-48 363.1 26.0 216 106-336 1-231 (236)
41 TIGR01288 nodI ATP-binding ABC 100.0 8.5E-44 1.8E-48 374.9 28.7 218 104-337 3-224 (303)
42 cd03265 ABC_DrrA DrrA is the A 100.0 6.9E-44 1.5E-48 358.5 26.5 213 106-334 1-218 (220)
43 cd03293 ABC_NrtD_SsuB_transpor 100.0 1E-43 2.2E-48 357.3 27.4 216 106-333 1-219 (220)
44 cd03259 ABC_Carb_Solutes_like 100.0 6.7E-44 1.5E-48 356.7 25.9 209 106-330 1-213 (213)
45 PRK11000 maltose/maltodextrin 100.0 9.4E-44 2E-48 383.5 28.3 217 105-337 3-223 (369)
46 TIGR00960 3a0501s02 Type II (G 100.0 6.7E-44 1.4E-48 357.5 24.6 207 106-326 2-216 (216)
47 PRK11607 potG putrescine trans 100.0 1.4E-43 3.1E-48 382.1 28.9 217 105-337 19-239 (377)
48 COG1122 CbiO ABC-type cobalt t 100.0 3.7E-44 8.1E-49 361.3 22.4 218 105-338 3-229 (235)
49 cd03218 ABC_YhbG The ABC trans 100.0 1.4E-43 3.1E-48 358.8 26.7 215 106-336 1-221 (232)
50 PRK13643 cbiO cobalt transport 100.0 1.4E-43 2.9E-48 370.6 27.3 231 106-348 2-247 (288)
51 COG1137 YhbG ABC-type (unclass 100.0 3.1E-45 6.8E-50 348.6 13.2 218 105-337 4-228 (243)
52 COG0410 LivF ABC-type branched 100.0 1.1E-43 2.4E-48 347.2 24.4 216 105-337 3-226 (237)
53 PRK09493 glnQ glutamine ABC tr 100.0 2.6E-43 5.7E-48 358.9 28.1 216 106-336 2-224 (240)
54 PRK11153 metN DL-methionine tr 100.0 2.1E-43 4.5E-48 377.6 28.6 219 106-336 2-229 (343)
55 cd03258 ABC_MetN_methionine_tr 100.0 1.9E-43 4.1E-48 358.3 26.8 219 106-336 2-229 (233)
56 cd03301 ABC_MalK_N The N-termi 100.0 2.2E-43 4.7E-48 352.9 26.6 209 106-330 1-213 (213)
57 PRK13637 cbiO cobalt transport 100.0 4.4E-43 9.5E-48 366.6 29.4 222 105-337 2-234 (287)
58 cd03260 ABC_PstB_phosphate_tra 100.0 1.6E-43 3.4E-48 357.4 25.2 214 106-334 1-226 (227)
59 cd03256 ABC_PhnC_transporter A 100.0 2.3E-43 4.9E-48 359.2 26.5 217 106-336 1-233 (241)
60 PRK11264 putative amino-acid A 100.0 3.1E-43 6.8E-48 360.4 27.4 217 105-336 3-232 (250)
61 cd03224 ABC_TM1139_LivF_branch 100.0 2.3E-43 5.1E-48 354.7 25.7 213 106-336 1-220 (222)
62 PRK09536 btuD corrinoid ABC tr 100.0 2.9E-43 6.3E-48 381.5 27.8 217 105-336 3-227 (402)
63 TIGR01188 drrA daunorubicin re 100.0 2E-43 4.4E-48 371.8 25.8 206 122-338 5-214 (302)
64 PRK13634 cbiO cobalt transport 100.0 4.4E-43 9.5E-48 367.2 27.9 220 105-336 2-234 (290)
65 cd03263 ABC_subfamily_A The AB 100.0 3.6E-43 7.7E-48 353.0 26.1 215 106-335 1-219 (220)
66 PRK11831 putative ABC transpor 100.0 5.2E-43 1.1E-47 362.9 28.0 217 105-336 7-232 (269)
67 TIGR03522 GldA_ABC_ATP gliding 100.0 4.8E-43 1E-47 368.7 28.1 216 105-337 2-221 (301)
68 COG0444 DppD ABC-type dipeptid 100.0 2.5E-43 5.4E-48 361.2 25.1 227 106-337 2-243 (316)
69 cd03266 ABC_NatA_sodium_export 100.0 4.4E-43 9.6E-48 351.9 26.4 213 106-330 2-218 (218)
70 PRK13651 cobalt transporter AT 100.0 4.8E-43 1E-47 368.8 27.9 221 105-337 2-254 (305)
71 cd03268 ABC_BcrA_bacitracin_re 100.0 3.1E-43 6.7E-48 350.6 24.9 205 106-330 1-208 (208)
72 cd03269 ABC_putative_ATPase Th 100.0 3.2E-43 7E-48 351.0 25.0 209 106-330 1-210 (210)
73 TIGR01186 proV glycine betaine 100.0 3.5E-43 7.7E-48 376.4 26.9 206 121-337 4-219 (363)
74 PRK15079 oligopeptide ABC tran 100.0 7.2E-43 1.6E-47 371.2 28.8 224 104-337 7-251 (331)
75 PRK13631 cbiO cobalt transport 100.0 9.4E-43 2E-47 368.8 29.3 221 104-336 20-264 (320)
76 TIGR02315 ABC_phnC phosphonate 100.0 2.8E-43 6E-48 359.2 24.4 216 106-335 2-233 (243)
77 PRK09473 oppD oligopeptide tra 100.0 1.2E-42 2.6E-47 369.5 29.9 229 104-337 11-251 (330)
78 PRK13647 cbiO cobalt transport 100.0 1.4E-42 2.9E-47 360.6 29.4 216 105-335 4-225 (274)
79 PRK10895 lipopolysaccharide AB 100.0 7.3E-43 1.6E-47 355.8 26.6 217 105-336 3-225 (241)
80 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.8E-43 8.3E-48 352.3 24.2 208 106-326 1-218 (218)
81 cd03295 ABC_OpuCA_Osmoprotecti 100.0 9.2E-43 2E-47 355.4 27.2 216 106-336 1-224 (242)
82 TIGR00972 3a0107s01c2 phosphat 100.0 1.2E-42 2.6E-47 355.7 28.0 217 106-336 2-231 (247)
83 cd03294 ABC_Pro_Gly_Bertaine T 100.0 6E-43 1.3E-47 362.4 25.8 214 107-336 26-249 (269)
84 COG0411 LivG ABC-type branched 100.0 1.4E-43 3E-48 349.0 19.8 218 105-337 4-239 (250)
85 PRK11124 artP arginine transpo 100.0 1.1E-42 2.3E-47 354.8 26.5 215 105-335 2-228 (242)
86 PRK10619 histidine/lysine/argi 100.0 1.5E-42 3.3E-47 357.0 27.7 217 105-336 5-240 (257)
87 cd03292 ABC_FtsE_transporter F 100.0 9.8E-43 2.1E-47 348.3 25.1 206 106-326 1-214 (214)
88 PRK13646 cbiO cobalt transport 100.0 1.3E-42 2.9E-47 362.9 27.1 221 105-337 2-235 (286)
89 PRK11308 dppF dipeptide transp 100.0 2.2E-42 4.7E-47 367.1 29.2 223 105-337 5-244 (327)
90 PRK13641 cbiO cobalt transport 100.0 1.8E-42 3.9E-47 362.0 28.0 221 105-337 2-234 (287)
91 PRK13650 cbiO cobalt transport 100.0 1.9E-42 4E-47 360.5 27.9 219 105-337 4-229 (279)
92 PRK11022 dppD dipeptide transp 100.0 2.3E-42 5E-47 366.9 29.1 228 105-337 3-243 (326)
93 PRK11248 tauB taurine transpor 100.0 2.4E-42 5.3E-47 355.1 28.3 212 106-333 2-216 (255)
94 TIGR02673 FtsE cell division A 100.0 1.3E-42 2.7E-47 347.6 25.4 205 106-325 2-214 (214)
95 PRK11247 ssuB aliphatic sulfon 100.0 1.5E-42 3.4E-47 356.7 26.7 208 104-333 11-219 (257)
96 TIGR03005 ectoine_ehuA ectoine 100.0 2.1E-42 4.5E-47 354.9 27.6 216 106-336 1-235 (252)
97 cd03262 ABC_HisP_GlnQ_permease 100.0 1.3E-42 2.9E-47 347.1 25.5 206 106-326 1-213 (213)
98 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 3E-42 6.5E-47 350.3 28.3 215 106-337 2-221 (236)
99 PRK11614 livF leucine/isoleuci 100.0 1.8E-42 3.9E-47 352.0 26.4 214 105-336 5-225 (237)
100 COG4172 ABC-type uncharacteriz 100.0 1.1E-42 2.4E-47 360.1 24.7 264 59-337 235-516 (534)
101 cd03226 ABC_cobalt_CbiO_domain 100.0 7.9E-43 1.7E-47 347.0 22.8 201 108-327 2-205 (205)
102 PRK11629 lolD lipoprotein tran 100.0 4E-42 8.6E-47 348.8 28.4 215 105-332 5-229 (233)
103 PRK11300 livG leucine/isoleuci 100.0 2.5E-42 5.3E-47 354.8 27.1 217 105-336 5-242 (255)
104 cd03264 ABC_drug_resistance_li 100.0 1.7E-42 3.6E-47 346.1 24.7 207 106-330 1-211 (211)
105 cd03257 ABC_NikE_OppD_transpor 100.0 3.1E-42 6.7E-47 347.8 26.8 214 106-330 2-228 (228)
106 TIGR03411 urea_trans_UrtD urea 100.0 3.3E-42 7.2E-47 351.1 26.2 216 105-336 2-230 (242)
107 PRK14242 phosphate transporter 100.0 7.4E-42 1.6E-46 350.9 29.0 223 104-336 5-236 (253)
108 PRK13649 cbiO cobalt transport 100.0 6.3E-42 1.4E-46 356.7 28.7 221 105-337 2-234 (280)
109 PRK10908 cell division protein 100.0 4.1E-42 8.8E-47 346.1 26.3 207 106-327 2-216 (222)
110 PRK13636 cbiO cobalt transport 100.0 6.5E-42 1.4E-46 357.2 28.4 218 105-337 5-231 (283)
111 cd03235 ABC_Metallic_Cations A 100.0 1.1E-42 2.4E-47 347.9 21.6 207 108-330 2-213 (213)
112 TIGR02769 nickel_nikE nickel i 100.0 5E-42 1.1E-46 354.7 27.2 222 105-336 2-239 (265)
113 TIGR03740 galliderm_ABC gallid 100.0 6.7E-42 1.5E-46 344.7 27.3 208 106-333 1-209 (223)
114 cd03234 ABCG_White The White s 100.0 5.1E-42 1.1E-46 346.4 26.3 216 105-330 3-226 (226)
115 COG4175 ProV ABC-type proline/ 100.0 7.1E-43 1.5E-47 352.5 19.9 235 105-363 4-267 (386)
116 PRK13548 hmuV hemin importer A 100.0 7.5E-42 1.6E-46 352.1 27.8 216 105-336 2-229 (258)
117 PRK09984 phosphonate/organopho 100.0 6.4E-42 1.4E-46 353.3 27.3 219 105-335 4-240 (262)
118 PRK13644 cbiO cobalt transport 100.0 9.5E-42 2.1E-46 354.3 28.7 215 106-336 2-223 (274)
119 TIGR01978 sufC FeS assembly AT 100.0 6.4E-42 1.4E-46 349.0 26.8 217 106-336 1-233 (243)
120 PRK10070 glycine betaine trans 100.0 5.3E-42 1.2E-46 371.4 27.8 203 124-337 42-254 (400)
121 PRK14273 phosphate ABC transpo 100.0 9.2E-42 2E-46 350.5 28.1 218 105-336 7-237 (254)
122 PRK13635 cbiO cobalt transport 100.0 1.2E-41 2.5E-46 354.5 28.9 218 105-337 5-229 (279)
123 PRK13639 cbiO cobalt transport 100.0 1.2E-41 2.5E-46 353.8 28.9 217 106-337 2-226 (275)
124 TIGR03410 urea_trans_UrtE urea 100.0 5.8E-42 1.3E-46 346.7 25.9 211 106-335 1-219 (230)
125 COG4559 ABC-type hemin transpo 100.0 2.1E-42 4.6E-47 332.0 21.1 217 106-337 2-230 (259)
126 PRK11231 fecE iron-dicitrate t 100.0 6.2E-42 1.3E-46 352.0 26.1 217 105-336 2-226 (255)
127 PRK14268 phosphate ABC transpo 100.0 1.1E-41 2.5E-46 350.7 28.0 218 104-336 11-241 (258)
128 PRK13638 cbiO cobalt transport 100.0 6.2E-42 1.3E-46 355.2 26.1 215 106-336 2-224 (271)
129 PRK15093 antimicrobial peptide 100.0 1.3E-41 2.9E-46 361.9 29.2 228 105-337 3-248 (330)
130 TIGR02211 LolD_lipo_ex lipopro 100.0 8.3E-42 1.8E-46 343.4 26.1 209 106-327 2-220 (221)
131 PRK14267 phosphate ABC transpo 100.0 1.1E-41 2.5E-46 349.5 27.4 223 105-336 4-236 (253)
132 cd03225 ABC_cobalt_CbiO_domain 100.0 4.8E-42 1E-46 342.7 23.9 204 108-325 2-211 (211)
133 TIGR01257 rim_protein retinal- 100.0 7.3E-40 1.6E-44 403.9 48.1 222 104-340 927-1152(2272)
134 PRK10575 iron-hydroxamate tran 100.0 8.3E-42 1.8E-46 353.1 26.1 218 104-336 10-236 (265)
135 PRK15112 antimicrobial peptide 100.0 1.2E-41 2.6E-46 352.3 27.2 222 105-336 4-238 (267)
136 cd03298 ABC_ThiQ_thiamine_tran 100.0 7.3E-42 1.6E-46 341.5 24.7 207 106-330 1-211 (211)
137 PRK13652 cbiO cobalt transport 100.0 1.7E-41 3.6E-46 353.0 28.4 218 105-337 3-227 (277)
138 PRK10253 iron-enterobactin tra 100.0 1.2E-41 2.6E-46 351.9 26.6 218 104-336 6-232 (265)
139 PRK10771 thiQ thiamine transpo 100.0 1.6E-41 3.5E-46 344.1 27.0 214 106-337 2-219 (232)
140 PRK14247 phosphate ABC transpo 100.0 2.1E-41 4.5E-46 347.0 28.1 223 105-336 3-233 (250)
141 TIGR03873 F420-0_ABC_ATP propo 100.0 1.2E-41 2.7E-46 350.0 26.3 216 106-336 2-225 (256)
142 PRK14250 phosphate ABC transpo 100.0 1.7E-41 3.6E-46 346.0 26.7 211 105-336 3-220 (241)
143 COG4152 ABC-type uncharacteriz 100.0 1.4E-42 3E-47 339.5 17.8 219 105-339 2-221 (300)
144 PRK14245 phosphate ABC transpo 100.0 2.3E-41 5E-46 346.7 27.8 222 105-337 3-234 (250)
145 PRK14256 phosphate ABC transpo 100.0 3.3E-41 7.1E-46 346.0 28.9 223 105-336 4-235 (252)
146 TIGR03415 ABC_choXWV_ATP choli 100.0 1.5E-41 3.4E-46 365.4 27.7 205 121-336 35-253 (382)
147 PRK10584 putative ABC transpor 100.0 2.9E-41 6.3E-46 341.2 27.7 211 105-328 6-226 (228)
148 COG1123 ATPase components of v 100.0 9.2E-42 2E-46 372.8 25.8 229 105-339 5-246 (539)
149 PRK10744 pstB phosphate transp 100.0 3.1E-41 6.7E-46 347.9 28.2 223 104-336 12-243 (260)
150 PRK13633 cobalt transporter AT 100.0 2.6E-41 5.7E-46 352.1 27.9 220 105-337 4-233 (280)
151 cd03300 ABC_PotA_N PotA is an 100.0 3E-41 6.4E-46 342.2 27.0 215 106-336 1-219 (232)
152 PRK14241 phosphate transporter 100.0 3.4E-41 7.4E-46 347.1 27.7 219 105-336 4-241 (258)
153 PRK14274 phosphate ABC transpo 100.0 3.3E-41 7.2E-46 347.4 27.6 223 104-336 11-242 (259)
154 PRK13632 cbiO cobalt transport 100.0 3.3E-41 7.2E-46 349.7 27.7 218 104-336 6-230 (271)
155 PRK11144 modC molybdate transp 100.0 2E-41 4.4E-46 363.5 26.8 207 106-337 2-218 (352)
156 PRK14269 phosphate ABC transpo 100.0 4.4E-41 9.6E-46 343.9 28.2 222 105-336 2-229 (246)
157 PRK13645 cbiO cobalt transport 100.0 2.4E-41 5.2E-46 354.0 26.8 220 105-336 6-239 (289)
158 TIGR01277 thiQ thiamine ABC tr 100.0 2.8E-41 6E-46 338.0 26.0 208 106-331 1-212 (213)
159 PRK13648 cbiO cobalt transport 100.0 5.1E-41 1.1E-45 348.0 28.9 218 105-337 7-231 (269)
160 PRK14239 phosphate transporter 100.0 4.9E-41 1.1E-45 344.5 28.4 222 105-336 5-235 (252)
161 PRK14235 phosphate transporter 100.0 4.6E-41 9.9E-46 348.0 28.1 223 104-336 18-250 (267)
162 TIGR00968 3a0106s01 sulfate AB 100.0 3.9E-41 8.4E-46 342.5 27.1 215 106-336 1-219 (237)
163 PRK13640 cbiO cobalt transport 100.0 4.9E-41 1.1E-45 350.4 27.7 222 104-337 4-232 (282)
164 PRK11701 phnK phosphonate C-P 100.0 4.9E-41 1.1E-45 346.0 27.3 217 105-336 6-240 (258)
165 cd03233 ABC_PDR_domain1 The pl 100.0 3E-41 6.4E-46 335.2 24.7 195 105-330 3-202 (202)
166 PRK14270 phosphate ABC transpo 100.0 6.9E-41 1.5E-45 343.4 28.1 222 105-336 4-234 (251)
167 PRK14262 phosphate ABC transpo 100.0 6.5E-41 1.4E-45 343.3 27.9 223 105-337 3-234 (250)
168 TIGR02142 modC_ABC molybdenum 100.0 2.9E-41 6.3E-46 362.6 26.5 208 110-337 4-221 (354)
169 TIGR01184 ntrCD nitrate transp 100.0 2E-41 4.4E-46 343.1 23.8 199 126-334 1-201 (230)
170 PRK14240 phosphate transporter 100.0 8.7E-41 1.9E-45 342.4 28.6 222 105-336 3-233 (250)
171 cd03299 ABC_ModC_like Archeal 100.0 6.7E-41 1.4E-45 340.3 27.5 214 106-336 1-218 (235)
172 PRK14249 phosphate ABC transpo 100.0 8.4E-41 1.8E-45 342.8 28.3 222 105-336 4-234 (251)
173 PRK14237 phosphate transporter 100.0 9.9E-41 2.2E-45 345.4 28.8 223 104-336 19-250 (267)
174 PRK14248 phosphate ABC transpo 100.0 9.5E-41 2.1E-45 345.7 28.3 218 105-336 21-251 (268)
175 PRK14272 phosphate ABC transpo 100.0 1E-40 2.3E-45 342.1 27.8 223 105-336 4-235 (252)
176 PRK14253 phosphate ABC transpo 100.0 8.5E-41 1.8E-45 342.3 27.1 221 105-335 3-231 (249)
177 PRK13547 hmuV hemin importer A 100.0 5.3E-41 1.2E-45 348.0 25.6 219 106-336 2-243 (272)
178 PRK13642 cbiO cobalt transport 100.0 1.6E-40 3.5E-45 345.6 28.5 218 105-336 4-228 (277)
179 cd03267 ABC_NatA_like Similar 100.0 6.5E-41 1.4E-45 340.7 24.8 199 121-330 32-236 (236)
180 cd03297 ABC_ModC_molybdenum_tr 100.0 8E-41 1.7E-45 334.8 24.8 200 110-330 5-214 (214)
181 PRK14258 phosphate ABC transpo 100.0 1.9E-40 4.2E-45 342.2 28.4 224 105-337 7-245 (261)
182 PRK14236 phosphate transporter 100.0 2.1E-40 4.5E-45 343.9 28.5 222 105-336 25-255 (272)
183 PRK14259 phosphate ABC transpo 100.0 1.1E-40 2.5E-45 345.3 26.5 222 104-337 12-253 (269)
184 PRK14261 phosphate ABC transpo 100.0 2.2E-40 4.8E-45 340.1 28.3 222 105-336 6-236 (253)
185 PRK14255 phosphate ABC transpo 100.0 2.4E-40 5.3E-45 339.5 28.5 222 105-336 5-235 (252)
186 PRK14251 phosphate ABC transpo 100.0 2.1E-40 4.5E-45 339.8 27.7 218 105-336 4-234 (251)
187 PRK14260 phosphate ABC transpo 100.0 1.5E-40 3.3E-45 342.5 26.8 222 105-336 7-242 (259)
188 PRK14275 phosphate ABC transpo 100.0 2.4E-40 5.1E-45 345.9 28.5 219 104-336 38-269 (286)
189 PRK10418 nikD nickel transport 100.0 2.5E-40 5.4E-45 340.0 28.0 216 105-336 4-229 (254)
190 COG4181 Predicted ABC-type tra 100.0 1.5E-41 3.2E-46 315.8 16.7 211 105-328 6-226 (228)
191 TIGR02323 CP_lyasePhnK phospho 100.0 2.5E-40 5.4E-45 339.6 27.4 217 105-336 3-237 (253)
192 PRK14271 phosphate ABC transpo 100.0 3.4E-40 7.3E-45 343.0 28.6 224 104-337 20-251 (276)
193 PRK14244 phosphate ABC transpo 100.0 2.1E-40 4.7E-45 339.8 26.6 221 106-336 6-236 (251)
194 PRK13549 xylose transporter AT 100.0 7.3E-41 1.6E-45 376.3 25.2 218 105-335 5-230 (506)
195 COG2274 SunT ABC-type bacterio 100.0 7E-41 1.5E-45 383.2 25.2 218 104-338 470-697 (709)
196 PRK10762 D-ribose transporter 100.0 7.1E-41 1.5E-45 376.0 24.8 216 105-335 4-228 (501)
197 TIGR02770 nickel_nikD nickel i 100.0 1.7E-40 3.6E-45 336.3 24.7 201 125-336 1-214 (230)
198 PRK15439 autoinducer 2 ABC tra 100.0 1.7E-40 3.6E-45 373.6 26.9 212 105-336 11-228 (510)
199 PRK10419 nikE nickel transport 100.0 3E-40 6.4E-45 342.1 26.6 222 105-336 3-240 (268)
200 PRK14238 phosphate transporter 100.0 4.3E-40 9.4E-45 341.4 27.8 222 105-336 24-254 (271)
201 COG4598 HisP ABC-type histidin 100.0 9.6E-42 2.1E-46 319.1 13.5 218 105-337 6-241 (256)
202 TIGR02982 heterocyst_DevA ABC 100.0 3.4E-40 7.3E-45 331.8 25.8 209 106-326 2-219 (220)
203 PRK14257 phosphate ABC transpo 100.0 5.2E-40 1.1E-44 349.0 28.6 226 104-337 79-313 (329)
204 PRK10261 glutathione transport 100.0 3.6E-40 7.8E-45 378.6 29.5 223 104-336 312-552 (623)
205 PRK14254 phosphate ABC transpo 100.0 8E-40 1.7E-44 341.7 29.2 217 104-336 38-268 (285)
206 cd03252 ABCC_Hemolysin The ABC 100.0 3E-40 6.5E-45 335.7 25.3 215 106-337 1-225 (237)
207 COG4525 TauB ABC-type taurine 100.0 1.7E-40 3.7E-45 314.7 21.5 215 105-333 3-220 (259)
208 TIGR03608 L_ocin_972_ABC putat 100.0 2E-40 4.4E-45 329.6 22.9 197 108-321 1-206 (206)
209 PRK09700 D-allose transporter 100.0 1.9E-40 4E-45 373.5 25.4 216 105-335 5-232 (510)
210 COG4988 CydD ABC-type transpor 100.0 2.4E-40 5.2E-45 360.3 24.8 216 103-337 318-543 (559)
211 PRK14246 phosphate ABC transpo 100.0 4.6E-40 9.9E-45 338.6 24.9 222 104-337 9-241 (257)
212 CHL00131 ycf16 sulfate ABC tra 100.0 1.3E-39 2.7E-44 334.1 28.1 216 105-334 7-238 (252)
213 PRK14265 phosphate ABC transpo 100.0 1E-39 2.3E-44 339.0 27.6 221 104-336 19-257 (274)
214 PRK14263 phosphate ABC transpo 100.0 1.2E-39 2.7E-44 336.1 27.9 222 104-337 7-245 (261)
215 PRK11174 cysteine/glutathione 100.0 3.7E-40 8E-45 377.3 26.3 214 105-337 349-572 (588)
216 PRK14266 phosphate ABC transpo 100.0 1.6E-39 3.4E-44 333.1 28.0 222 105-336 3-233 (250)
217 PRK14243 phosphate transporter 100.0 1.5E-39 3.2E-44 336.2 27.5 221 105-337 10-248 (264)
218 PRK15056 manganese/iron transp 100.0 6.9E-40 1.5E-44 340.1 25.2 217 105-336 6-229 (272)
219 PRK10261 glutathione transport 100.0 5.2E-40 1.1E-44 377.3 26.4 221 105-336 12-257 (623)
220 cd03245 ABCC_bacteriocin_expor 100.0 7E-40 1.5E-44 329.1 24.1 209 105-330 2-220 (220)
221 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 7.2E-40 1.6E-44 333.1 24.4 217 106-338 1-227 (238)
222 KOG0055 Multidrug/pheromone ex 100.0 2.2E-38 4.8E-43 368.4 39.9 218 104-337 349-576 (1228)
223 PRK13538 cytochrome c biogenes 100.0 1.3E-39 2.8E-44 323.8 25.4 197 106-321 2-202 (204)
224 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 6.9E-40 1.5E-44 381.2 27.2 213 105-337 451-673 (686)
225 cd03254 ABCC_Glucan_exporter_l 100.0 8.9E-40 1.9E-44 330.4 24.2 215 105-337 2-226 (229)
226 cd03213 ABCG_EPDR ABCG transpo 100.0 1.6E-39 3.6E-44 320.7 25.3 187 105-330 3-194 (194)
227 cd03232 ABC_PDR_domain2 The pl 100.0 1.5E-39 3.2E-44 320.5 24.2 187 104-330 2-192 (192)
228 KOG0058 Peptide exporter, ABC 100.0 3.1E-40 6.8E-45 365.5 21.7 216 104-337 464-691 (716)
229 TIGR02633 xylG D-xylose ABC tr 100.0 7.9E-40 1.7E-44 367.6 25.4 217 106-335 2-228 (500)
230 TIGR03269 met_CoM_red_A2 methy 100.0 1E-39 2.2E-44 368.4 26.1 222 104-337 278-517 (520)
231 PRK10982 galactose/methyl gala 100.0 6.3E-40 1.4E-44 367.5 24.2 212 109-335 2-221 (491)
232 PRK11176 lipid transporter ATP 100.0 8E-40 1.7E-44 374.1 25.5 217 105-337 341-567 (582)
233 PRK14252 phosphate ABC transpo 100.0 3.1E-39 6.6E-44 333.9 27.5 223 104-336 15-248 (265)
234 PRK13543 cytochrome c biogenes 100.0 2.3E-39 5E-44 324.4 25.4 201 104-323 10-212 (214)
235 PRK10247 putative ABC transpor 100.0 1.6E-39 3.6E-44 328.0 24.4 207 105-331 7-221 (225)
236 PRK11288 araG L-arabinose tran 100.0 1.3E-39 2.7E-44 365.9 25.8 213 105-332 4-224 (501)
237 cd03251 ABCC_MsbA MsbA is an e 100.0 5.6E-40 1.2E-44 332.9 20.8 215 106-337 1-225 (234)
238 PRK15134 microcin C ABC transp 100.0 1.5E-39 3.2E-44 367.6 26.6 222 104-336 274-514 (529)
239 PRK10790 putative multidrug tr 100.0 1.7E-39 3.6E-44 372.1 27.2 214 105-337 340-563 (592)
240 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1E-39 2.2E-44 329.3 22.3 202 106-330 23-224 (224)
241 PRK09544 znuC high-affinity zi 100.0 3E-39 6.5E-44 331.3 26.0 202 105-336 4-208 (251)
242 PRK15134 microcin C ABC transp 100.0 2.5E-39 5.4E-44 365.8 27.8 224 105-336 5-245 (529)
243 cd03231 ABC_CcmA_heme_exporter 100.0 1.7E-39 3.6E-44 322.3 23.0 194 106-321 1-198 (201)
244 cd03253 ABCC_ATM1_transporter 100.0 2.9E-39 6.4E-44 328.1 25.1 213 106-336 1-223 (236)
245 PRK03695 vitamin B12-transport 100.0 2.2E-39 4.8E-44 331.8 24.3 199 125-336 11-221 (248)
246 PRK13546 teichoic acids export 100.0 1E-38 2.2E-43 329.5 28.9 215 104-337 3-232 (264)
247 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.3E-39 2.9E-44 380.4 25.0 214 105-337 477-700 (710)
248 TIGR01257 rim_protein retinal- 100.0 3.2E-39 7E-44 398.2 29.3 223 104-340 1936-2162(2272)
249 cd03289 ABCC_CFTR2 The CFTR su 100.0 3.3E-39 7.1E-44 334.7 24.9 214 105-337 2-225 (275)
250 KOG0057 Mitochondrial Fe/S clu 100.0 1.8E-39 3.8E-44 348.5 23.4 216 103-337 349-574 (591)
251 PRK09580 sufC cysteine desulfu 100.0 8E-39 1.7E-43 327.3 27.3 216 106-335 2-233 (248)
252 PRK14264 phosphate ABC transpo 100.0 9.7E-39 2.1E-43 336.6 28.7 222 105-336 45-288 (305)
253 TIGR03269 met_CoM_red_A2 methy 100.0 3.1E-39 6.8E-44 364.3 26.4 218 106-339 1-260 (520)
254 TIGR01189 ccmA heme ABC export 100.0 5E-39 1.1E-43 318.1 23.9 193 106-320 1-197 (198)
255 COG1129 MglA ABC-type sugar tr 100.0 2.6E-39 5.6E-44 351.5 23.8 214 104-332 7-229 (500)
256 TIGR02324 CP_lyasePhnL phospho 100.0 5.7E-39 1.2E-43 323.5 24.5 206 106-322 2-223 (224)
257 cd03230 ABC_DR_subfamily_A Thi 100.0 4.1E-39 9E-44 312.0 22.5 169 106-326 1-173 (173)
258 PRK13549 xylose transporter AT 100.0 2.3E-39 5.1E-44 364.2 23.5 220 104-335 258-492 (506)
259 COG4604 CeuD ABC-type enteroch 100.0 2.2E-40 4.7E-45 314.6 12.6 217 106-337 2-225 (252)
260 COG4161 ArtP ABC-type arginine 100.0 1.3E-39 2.9E-44 299.8 17.4 214 105-333 2-226 (242)
261 PRK13539 cytochrome c biogenes 100.0 8.6E-39 1.9E-43 318.7 24.6 197 105-323 2-200 (207)
262 PRK11160 cysteine/glutathione 100.0 5.1E-39 1.1E-43 366.4 26.2 216 104-337 337-562 (574)
263 TIGR00958 3a01208 Conjugate Tr 100.0 3.3E-39 7.2E-44 376.2 25.1 215 105-337 478-702 (711)
264 COG4987 CydC ABC-type transpor 100.0 1.5E-39 3.2E-44 348.9 20.2 216 105-337 336-561 (573)
265 TIGR03375 type_I_sec_LssB type 100.0 4.4E-39 9.5E-44 375.0 26.0 217 105-338 463-689 (694)
266 COG1132 MdlB ABC-type multidru 100.0 3.6E-39 7.7E-44 367.6 24.4 216 104-337 327-552 (567)
267 cd03217 ABC_FeS_Assembly ABC-t 100.0 9.1E-39 2E-43 316.9 24.1 187 106-340 1-196 (200)
268 cd03244 ABCC_MRP_domain2 Domai 100.0 6.4E-39 1.4E-43 322.4 22.9 209 105-331 2-220 (221)
269 COG4148 ModC ABC-type molybdat 100.0 8.7E-40 1.9E-44 325.1 15.6 193 128-337 16-218 (352)
270 TIGR01193 bacteriocin_ABC ABC- 100.0 4.8E-39 1E-43 375.4 24.4 215 105-337 473-697 (708)
271 PRK13657 cyclic beta-1,2-gluca 100.0 1E-38 2.2E-43 365.3 26.3 215 105-337 334-558 (588)
272 PRK10938 putative molybdenum t 100.0 6.6E-39 1.4E-43 359.2 24.0 208 105-336 3-223 (490)
273 TIGR01842 type_I_sec_PrtD type 100.0 1.2E-38 2.6E-43 361.5 26.0 217 105-337 316-542 (544)
274 TIGR03771 anch_rpt_ABC anchore 100.0 7.9E-39 1.7E-43 322.6 21.7 195 131-336 1-200 (223)
275 PRK13545 tagH teichoic acids e 100.0 3.5E-38 7.6E-43 346.0 28.5 214 104-338 20-233 (549)
276 cd03215 ABC_Carb_Monos_II This 100.0 1.5E-38 3.2E-43 310.7 22.8 170 105-326 4-182 (182)
277 PRK09700 D-allose transporter 100.0 5.9E-39 1.3E-43 361.3 23.0 212 104-332 264-493 (510)
278 cd03229 ABC_Class3 This class 100.0 1.2E-38 2.6E-43 310.2 21.8 170 106-325 1-178 (178)
279 PRK13540 cytochrome c biogenes 100.0 2.6E-38 5.7E-43 313.4 23.2 192 106-319 2-197 (200)
280 TIGR02203 MsbA_lipidA lipid A 100.0 1.6E-38 3.5E-43 362.5 24.8 217 105-337 330-556 (571)
281 cd03250 ABCC_MRP_domain1 Domai 100.0 2.6E-38 5.6E-43 314.3 22.4 198 106-325 1-204 (204)
282 cd03248 ABCC_TAP TAP, the Tran 100.0 8E-39 1.7E-43 322.9 18.8 207 104-326 10-226 (226)
283 cd03288 ABCC_SUR2 The SUR doma 100.0 7.4E-38 1.6E-42 322.2 26.3 216 104-337 18-243 (257)
284 TIGR01166 cbiO cobalt transpor 100.0 3.1E-38 6.6E-43 310.3 21.9 176 122-308 4-188 (190)
285 cd03246 ABCC_Protease_Secretio 100.0 3.1E-38 6.6E-43 306.0 21.2 168 106-326 1-173 (173)
286 TIGR02633 xylG D-xylose ABC tr 100.0 2.2E-38 4.8E-43 355.9 23.3 218 104-333 256-488 (500)
287 TIGR01846 type_I_sec_HlyB type 100.0 4.1E-38 8.9E-43 366.7 25.7 216 105-337 455-680 (694)
288 cd03369 ABCC_NFT1 Domain 2 of 100.0 6.8E-38 1.5E-42 312.0 23.5 197 105-332 6-207 (207)
289 TIGR02204 MsbA_rel ABC transpo 100.0 6.5E-38 1.4E-42 357.9 26.4 217 105-337 337-563 (576)
290 PRK10789 putative multidrug tr 100.0 5.9E-38 1.3E-42 357.5 25.6 216 105-337 313-538 (569)
291 PRK10762 D-ribose transporter 100.0 3.6E-38 7.8E-43 354.1 23.5 211 105-335 257-482 (501)
292 cd03247 ABCC_cytochrome_bd The 100.0 3.6E-38 7.9E-43 306.8 20.3 174 106-330 1-178 (178)
293 PRK11288 araG L-arabinose tran 100.0 2.1E-38 4.6E-43 356.0 21.3 212 105-335 257-483 (501)
294 PRK10535 macrolide transporter 100.0 7.1E-37 1.5E-41 352.7 33.7 218 105-335 4-230 (648)
295 COG0396 sufC Cysteine desulfur 100.0 1.6E-37 3.5E-42 302.7 23.7 229 105-346 3-242 (251)
296 cd03214 ABC_Iron-Siderophores_ 100.0 4.4E-38 9.6E-43 306.8 20.0 174 107-330 1-180 (180)
297 TIGR01192 chvA glucan exporter 100.0 1.5E-37 3.3E-42 355.0 26.9 215 105-337 334-558 (585)
298 TIGR01187 potA spermidine/putr 100.0 1.3E-37 2.8E-42 330.7 23.2 186 141-337 1-190 (325)
299 cd03290 ABCC_SUR1_N The SUR do 100.0 3.5E-37 7.7E-42 309.3 23.3 201 107-325 2-218 (218)
300 PTZ00265 multidrug resistance 100.0 1.3E-37 2.8E-42 383.3 24.5 221 105-337 1165-1452(1466)
301 COG4608 AppF ABC-type oligopep 100.0 2.4E-37 5.2E-42 311.0 21.4 190 105-337 4-199 (268)
302 COG4172 ABC-type uncharacteriz 100.0 2.6E-37 5.6E-42 320.3 22.2 229 104-337 5-247 (534)
303 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.6E-36 3.5E-41 315.6 28.0 204 104-337 38-247 (282)
304 COG3845 ABC-type uncharacteriz 100.0 2.4E-37 5.2E-42 329.8 21.9 213 104-331 3-223 (501)
305 PRK15439 autoinducer 2 ABC tra 100.0 1.9E-37 4.2E-42 348.8 22.2 211 105-335 268-490 (510)
306 TIGR01194 cyc_pep_trnsptr cycl 100.0 3.9E-37 8.6E-42 349.6 24.2 210 104-329 336-551 (555)
307 PRK15064 ABC transporter ATP-b 100.0 8.3E-37 1.8E-41 345.4 26.2 207 106-336 2-241 (530)
308 PRK15177 Vi polysaccharide exp 100.0 9.7E-37 2.1E-41 305.3 23.3 195 124-341 1-196 (213)
309 PRK13541 cytochrome c biogenes 100.0 9.3E-37 2E-41 301.2 22.7 190 106-318 2-192 (195)
310 cd03216 ABC_Carb_Monos_I This 100.0 8.9E-37 1.9E-41 293.0 21.9 156 106-328 1-162 (163)
311 cd03228 ABCC_MRP_Like The MRP 100.0 5.7E-37 1.2E-41 296.5 20.5 166 106-325 1-171 (171)
312 cd03223 ABCD_peroxisomal_ALDP 100.0 8E-37 1.7E-41 294.2 21.4 164 106-325 1-164 (166)
313 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.2E-36 2.6E-41 311.1 23.7 188 125-334 9-204 (246)
314 COG1119 ModF ABC-type molybden 100.0 3.3E-37 7.1E-42 303.9 18.3 213 104-331 30-256 (257)
315 TIGR02868 CydC thiol reductant 100.0 3.8E-37 8.3E-42 348.1 21.4 187 105-307 334-529 (529)
316 COG4619 ABC-type uncharacteriz 100.0 1.2E-37 2.6E-42 288.9 14.1 192 121-326 14-212 (223)
317 COG4618 ArpD ABC-type protease 100.0 6.1E-37 1.3E-41 326.0 21.0 221 104-340 333-563 (580)
318 PRK11819 putative ABC transpor 100.0 1.8E-36 3.8E-41 344.3 26.0 209 104-336 5-249 (556)
319 PRK15064 ABC transporter ATP-b 100.0 1.8E-36 3.9E-41 342.6 25.9 204 104-337 318-525 (530)
320 KOG0055 Multidrug/pheromone ex 100.0 5.2E-37 1.1E-41 357.0 21.8 217 105-337 987-1213(1228)
321 TIGR02857 CydD thiol reductant 100.0 1.1E-36 2.4E-41 344.4 23.0 200 105-321 320-529 (529)
322 PRK10982 galactose/methyl gala 100.0 1E-36 2.2E-41 341.6 22.1 213 104-333 249-476 (491)
323 PLN03130 ABC transporter C fam 100.0 1.6E-36 3.5E-41 376.8 26.1 215 105-337 1237-1461(1622)
324 PRK10938 putative molybdenum t 100.0 1.2E-36 2.7E-41 340.9 22.5 214 104-331 259-486 (490)
325 PLN03232 ABC transporter C fam 100.0 1.5E-36 3.3E-41 376.6 25.4 215 105-337 1234-1458(1495)
326 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 4.9E-36 1.1E-40 340.5 25.4 209 105-337 4-248 (552)
327 PRK10522 multidrug transporter 100.0 6.2E-36 1.3E-40 339.5 25.2 203 105-329 322-530 (547)
328 PTZ00243 ABC transporter; Prov 100.0 8.4E-36 1.8E-40 369.9 26.8 215 105-337 1308-1533(1560)
329 COG4674 Uncharacterized ABC-ty 100.0 3E-36 6.5E-41 286.0 16.9 217 104-336 4-234 (249)
330 TIGR00957 MRP_assoc_pro multi 100.0 8.6E-36 1.9E-40 370.4 26.2 215 105-337 1284-1508(1522)
331 PRK11819 putative ABC transpor 100.0 2.1E-35 4.5E-40 335.5 26.6 204 104-334 323-530 (556)
332 PRK13409 putative ATPase RIL; 100.0 2E-35 4.3E-40 335.8 25.5 198 104-332 339-537 (590)
333 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.7E-35 5.8E-40 334.5 26.1 203 104-333 321-527 (552)
334 PTZ00265 multidrug resistance 100.0 1.1E-35 2.3E-40 366.4 23.9 212 105-324 382-655 (1466)
335 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.8E-35 3.9E-40 303.8 19.6 198 110-330 5-220 (255)
336 COG4586 ABC-type uncharacteriz 100.0 1E-35 2.2E-40 295.7 16.3 207 122-340 36-249 (325)
337 TIGR01271 CFTR_protein cystic 100.0 6.8E-35 1.5E-39 361.5 26.8 214 105-337 1217-1440(1490)
338 PRK10636 putative ABC transpor 100.0 1.3E-34 2.9E-39 333.0 25.4 203 104-337 311-517 (638)
339 COG4167 SapF ABC-type antimicr 100.0 3.8E-35 8.2E-40 275.5 16.4 223 105-337 4-239 (267)
340 KOG0056 Heavy metal exporter H 100.0 1.6E-35 3.6E-40 311.6 13.7 216 102-337 534-761 (790)
341 PRK11147 ABC transporter ATPas 100.0 2.9E-34 6.3E-39 330.7 25.2 204 104-334 318-525 (635)
342 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.7E-34 5.8E-39 270.2 20.1 144 106-325 1-144 (144)
343 PLN03073 ABC transporter F fam 100.0 5.9E-34 1.3E-38 329.5 26.6 206 104-337 507-714 (718)
344 TIGR00954 3a01203 Peroxysomal 100.0 2.6E-34 5.7E-39 331.7 22.9 199 105-322 451-652 (659)
345 COG1101 PhnK ABC-type uncharac 100.0 1.7E-34 3.7E-39 278.2 17.4 215 106-330 2-231 (263)
346 cd03222 ABC_RNaseL_inhibitor T 100.0 5.1E-34 1.1E-38 276.8 19.8 154 109-334 4-160 (177)
347 COG1134 TagH ABC-type polysacc 100.0 2.1E-33 4.7E-38 277.3 23.9 219 105-341 3-240 (249)
348 cd03238 ABC_UvrA The excision 100.0 5.1E-34 1.1E-38 276.5 18.9 160 122-329 7-169 (176)
349 PRK10636 putative ABC transpor 100.0 1.5E-33 3.2E-38 324.4 26.2 205 106-335 2-234 (638)
350 PLN03232 ABC transporter C fam 100.0 5.9E-34 1.3E-38 353.6 24.4 209 105-337 614-828 (1495)
351 PLN03130 ABC transporter C fam 100.0 1E-33 2.2E-38 352.0 25.3 208 105-337 614-828 (1622)
352 PRK11147 ABC transporter ATPas 100.0 4.7E-33 1E-37 320.7 26.3 205 105-335 3-241 (635)
353 KOG0059 Lipid exporter ABCA1 a 100.0 8.1E-34 1.8E-38 336.3 19.9 223 104-341 563-791 (885)
354 TIGR00957 MRP_assoc_pro multi 100.0 4.3E-33 9.4E-38 346.3 25.7 208 105-337 636-850 (1522)
355 COG4136 ABC-type uncharacteriz 100.0 1.2E-33 2.7E-38 257.7 14.8 191 105-308 2-196 (213)
356 COG4107 PhnK ABC-type phosphon 100.0 1.1E-33 2.4E-38 263.7 14.8 219 105-337 6-241 (258)
357 COG5265 ATM1 ABC-type transpor 100.0 2.2E-33 4.8E-38 293.0 15.7 217 103-337 260-486 (497)
358 PRK13409 putative ATPase RIL; 100.0 4.1E-33 8.9E-38 316.9 19.2 188 111-324 79-287 (590)
359 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2.9E-32 6.3E-37 259.7 20.5 151 108-325 2-157 (157)
360 COG4133 CcmA ABC-type transpor 100.0 8.5E-33 1.9E-37 261.9 14.6 186 106-309 3-192 (209)
361 TIGR01271 CFTR_protein cystic 100.0 3.3E-32 7.1E-37 337.6 24.0 203 105-337 428-636 (1490)
362 PTZ00243 ABC transporter; Prov 100.0 4.4E-31 9.6E-36 327.9 24.9 194 122-337 672-870 (1560)
363 PLN03073 ABC transporter F fam 100.0 3.4E-31 7.4E-36 306.5 19.0 215 104-334 176-428 (718)
364 COG0488 Uup ATPase components 100.0 7E-31 1.5E-35 292.2 20.6 203 105-332 3-235 (530)
365 cd03270 ABC_UvrA_I The excisio 100.0 1.4E-30 3.1E-35 263.0 20.6 189 122-330 7-226 (226)
366 KOG0054 Multidrug resistance-a 100.0 2.6E-30 5.6E-35 307.8 22.9 216 104-337 1137-1362(1381)
367 KOG0054 Multidrug resistance-a 100.0 3.1E-28 6.8E-33 290.0 38.2 210 104-337 517-731 (1381)
368 COG4778 PhnL ABC-type phosphon 100.0 4.8E-30 1E-34 238.7 13.1 209 105-323 4-227 (235)
369 PF00005 ABC_tran: ABC transpo 100.0 3E-30 6.5E-35 239.5 11.8 132 126-276 1-137 (137)
370 cd03271 ABC_UvrA_II The excisi 100.0 4.9E-29 1.1E-33 255.7 20.7 195 123-332 8-261 (261)
371 COG0488 Uup ATPase components 100.0 5.2E-28 1.1E-32 269.3 22.7 203 103-336 319-524 (530)
372 cd03278 ABC_SMC_barmotin Barmo 100.0 1.3E-28 2.8E-33 243.6 14.3 165 127-323 14-190 (197)
373 COG1129 MglA ABC-type sugar tr 100.0 1.1E-27 2.4E-32 260.8 21.5 211 103-332 261-485 (500)
374 COG4138 BtuD ABC-type cobalami 100.0 4.4E-29 9.5E-34 233.3 5.8 206 105-336 3-220 (248)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.9 1.6E-27 3.6E-32 243.0 13.3 184 122-322 14-234 (243)
376 COG4178 ABC-type uncharacteriz 99.9 1.4E-26 3.1E-31 256.7 19.6 196 104-322 391-587 (604)
377 cd03274 ABC_SMC4_euk Eukaryoti 99.9 6.6E-28 1.4E-32 241.2 2.9 186 105-323 5-204 (212)
378 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.2E-26 2.7E-31 238.0 11.7 176 136-322 25-242 (251)
379 COG3845 ABC-type uncharacteriz 99.9 2.9E-25 6.2E-30 237.5 21.1 219 103-334 255-489 (501)
380 cd03279 ABC_sbcCD SbcCD and ot 99.9 9.6E-26 2.1E-30 225.8 16.4 191 105-326 5-211 (213)
381 cd03240 ABC_Rad50 The catalyti 99.9 2.3E-25 4.9E-30 221.7 13.5 163 129-323 16-197 (204)
382 PRK00635 excinuclease ABC subu 99.9 2.1E-24 4.6E-29 263.6 23.5 136 193-337 759-906 (1809)
383 PRK00349 uvrA excinuclease ABC 99.9 4.3E-24 9.4E-29 251.4 22.4 126 197-337 792-927 (943)
384 COG4615 PvdE ABC-type sideroph 99.9 6.6E-25 1.4E-29 227.5 8.7 203 105-330 322-530 (546)
385 TIGR00630 uvra excinuclease AB 99.9 3.1E-23 6.7E-28 243.8 23.0 125 196-335 789-923 (924)
386 KOG0927 Predicted transporter 99.9 1.3E-23 2.8E-28 225.8 14.8 211 105-335 75-307 (614)
387 COG4170 SapD ABC-type antimicr 99.9 1.5E-23 3.2E-28 201.3 13.5 223 106-337 4-248 (330)
388 KOG0927 Predicted transporter 99.9 9.8E-24 2.1E-28 226.7 11.2 202 102-332 386-591 (614)
389 COG1245 Predicted ATPase, RNas 99.9 8.1E-23 1.8E-27 215.5 17.2 189 104-322 341-530 (591)
390 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2.7E-23 5.8E-28 212.8 10.0 177 137-322 23-232 (247)
391 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.5E-22 3.3E-27 200.4 13.3 168 126-325 12-192 (198)
392 KOG0060 Long-chain acyl-CoA tr 99.9 5.8E-22 1.3E-26 214.5 18.6 205 104-323 432-641 (659)
393 KOG2355 Predicted ABC-type tra 99.9 8.8E-21 1.9E-25 181.9 16.4 210 104-337 12-237 (291)
394 KOG0062 ATPase component of AB 99.9 1.6E-21 3.5E-26 208.7 10.7 202 103-334 78-282 (582)
395 PF01061 ABC2_membrane: ABC-2 99.8 7.3E-23 1.6E-27 201.8 -1.2 203 433-640 1-205 (210)
396 KOG0066 eIF2-interacting prote 99.8 9.9E-21 2.1E-25 198.0 12.8 193 102-324 583-777 (807)
397 cd03280 ABC_MutS2 MutS2 homolo 99.8 1.1E-20 2.3E-25 187.5 12.1 146 126-330 17-172 (200)
398 KOG0062 ATPase component of AB 99.8 3E-20 6.5E-25 199.0 14.4 199 102-328 359-559 (582)
399 cd03277 ABC_SMC5_euk Eukaryoti 99.8 2.5E-20 5.5E-25 186.6 12.8 82 244-326 123-212 (213)
400 COG1245 Predicted ATPase, RNas 99.8 7.8E-20 1.7E-24 193.1 12.1 170 133-323 97-288 (591)
401 COG2401 ABC-type ATPase fused 99.8 5.1E-19 1.1E-23 184.9 15.5 186 122-327 395-588 (593)
402 cd03239 ABC_SMC_head The struc 99.8 8.1E-19 1.8E-23 170.9 15.9 74 248-323 95-172 (178)
403 KOG0064 Peroxisomal long-chain 99.8 2.3E-19 5E-24 192.0 12.6 186 105-308 481-670 (728)
404 cd03283 ABC_MutS-like MutS-lik 99.8 6.3E-19 1.4E-23 174.6 9.8 147 124-322 15-164 (199)
405 PRK00635 excinuclease ABC subu 99.8 1.7E-17 3.6E-22 203.8 21.3 128 196-337 1660-1796(1809)
406 cd03241 ABC_RecN RecN ATPase i 99.8 4.9E-18 1.1E-22 176.8 14.0 76 247-325 170-249 (276)
407 COG0178 UvrA Excinuclease ATPa 99.8 2.3E-17 4.9E-22 185.0 18.7 128 196-337 783-919 (935)
408 cd03227 ABC_Class2 ABC-type Cl 99.8 6E-18 1.3E-22 162.3 12.2 75 247-323 77-155 (162)
409 cd03285 ABC_MSH2_euk MutS2 hom 99.8 3.8E-18 8.3E-23 171.9 11.3 152 123-331 17-175 (222)
410 PRK00349 uvrA excinuclease ABC 99.7 2E-17 4.4E-22 195.3 14.3 134 195-337 435-585 (943)
411 cd03243 ABC_MutS_homologs The 99.7 4.6E-18 1E-22 168.9 6.9 153 130-335 23-177 (202)
412 TIGR00630 uvra excinuclease AB 99.7 5.3E-17 1.1E-21 191.5 15.1 133 195-336 433-582 (924)
413 KOG0066 eIF2-interacting prote 99.7 3.2E-18 7E-23 179.3 3.0 206 104-329 263-490 (807)
414 cd03242 ABC_RecF RecF is a rec 99.7 7.3E-16 1.6E-20 160.0 15.5 77 245-326 181-269 (270)
415 cd03284 ABC_MutS1 MutS1 homolo 99.6 7.3E-16 1.6E-20 154.7 10.7 156 124-336 19-180 (216)
416 cd03282 ABC_MSH4_euk MutS4 hom 99.6 1.3E-15 2.9E-20 151.4 9.9 136 122-307 15-151 (204)
417 KOG0063 RNAse L inhibitor, ABC 99.6 9.3E-15 2E-19 153.7 15.0 177 123-322 349-531 (592)
418 TIGR02858 spore_III_AA stage I 99.6 1.2E-14 2.7E-19 150.0 11.8 138 137-335 112-267 (270)
419 smart00534 MUTSac ATPase domai 99.5 8E-15 1.7E-19 143.7 3.7 79 246-329 60-142 (185)
420 PRK00064 recF recombination pr 99.5 2E-12 4.3E-17 139.7 18.8 79 244-326 270-359 (361)
421 PF02463 SMC_N: RecF/RecN/SMC 99.4 9.5E-14 2.1E-18 139.5 6.0 73 247-322 136-212 (220)
422 cd03281 ABC_MSH5_euk MutS5 hom 99.4 1E-12 2.3E-17 131.6 11.6 120 136-308 29-155 (213)
423 KOG0063 RNAse L inhibitor, ABC 99.4 3.5E-13 7.7E-18 142.0 5.3 169 134-323 98-288 (592)
424 TIGR01069 mutS2 MutS2 family p 99.4 1.3E-12 2.9E-17 152.8 10.6 129 129-308 314-446 (771)
425 PTZ00132 GTP-binding nuclear p 99.3 4E-12 8.7E-17 127.2 7.8 44 252-295 157-205 (215)
426 cd00820 PEPCK_HprK Phosphoenol 99.3 4E-12 8.6E-17 112.6 6.7 71 123-205 2-77 (107)
427 TIGR01247 drrB daunorubicin re 99.3 1.2E-10 2.5E-15 118.4 18.1 193 441-640 1-201 (236)
428 cd03287 ABC_MSH3_euk MutS3 hom 99.3 3.4E-11 7.4E-16 121.3 13.7 133 123-308 18-155 (222)
429 PRK08533 flagellar accessory p 99.3 3.1E-11 6.8E-16 122.4 12.9 150 132-322 20-184 (230)
430 TIGR00634 recN DNA repair prot 99.3 8.8E-12 1.9E-16 142.3 9.7 77 246-325 439-519 (563)
431 PRK10869 recombination and rep 99.2 2.9E-11 6.2E-16 137.3 10.6 77 246-325 429-509 (553)
432 cd01124 KaiC KaiC is a circadi 99.2 5.7E-11 1.2E-15 115.8 11.3 79 244-322 68-163 (187)
433 TIGR00618 sbcc exonuclease Sbc 99.2 3.1E-11 6.7E-16 147.2 11.5 82 242-324 945-1036(1042)
434 PHA02562 46 endonuclease subun 99.2 2.1E-11 4.5E-16 139.4 8.5 79 244-326 465-555 (562)
435 PRK00409 recombination and DNA 99.2 2.4E-11 5.3E-16 142.6 8.1 81 246-329 389-470 (782)
436 PRK07721 fliI flagellum-specif 99.2 1.2E-10 2.5E-15 128.0 12.5 171 122-334 145-340 (438)
437 cd03286 ABC_MSH6_euk MutS6 hom 99.2 1.2E-10 2.7E-15 116.9 10.4 134 123-308 17-154 (218)
438 cd01128 rho_factor Transcripti 99.2 2.2E-11 4.7E-16 124.6 5.0 75 246-326 128-211 (249)
439 TIGR03861 phenyl_ABC_PedC alco 99.2 2.9E-09 6.3E-14 109.4 20.4 204 432-640 1-217 (253)
440 PRK13695 putative NTPase; Prov 99.1 1.4E-11 3E-16 119.5 2.4 78 246-329 77-156 (174)
441 COG0178 UvrA Excinuclease ATPa 99.1 4.8E-10 1E-14 126.9 14.1 136 195-338 427-578 (935)
442 PF13304 AAA_21: AAA domain; P 99.1 1.6E-10 3.4E-15 115.8 8.0 63 246-308 235-300 (303)
443 TIGR02788 VirB11 P-type DNA tr 99.1 2.3E-10 5E-15 121.1 9.7 141 129-336 137-280 (308)
444 TIGR00025 Mtu_efflux ABC trans 99.1 7.8E-09 1.7E-13 104.8 18.7 186 447-640 2-193 (232)
445 PRK03918 chromosome segregatio 99.1 3.5E-10 7.6E-15 136.1 10.2 78 243-322 784-867 (880)
446 TIGR01291 nodJ ABC-2 type tran 99.1 1E-08 2.2E-13 105.5 19.6 200 435-640 7-213 (253)
447 PRK06793 fliI flagellum-specif 99.1 5.1E-10 1.1E-14 122.2 10.2 169 106-332 131-306 (432)
448 PRK10246 exonuclease subunit S 99.0 7.1E-10 1.5E-14 134.9 11.2 80 243-323 945-1032(1047)
449 PRK13830 conjugal transfer pro 99.0 3.5E-09 7.6E-14 125.7 16.1 70 263-332 650-728 (818)
450 cd01120 RecA-like_NTPases RecA 99.0 1.6E-09 3.5E-14 102.1 10.4 64 247-310 67-140 (165)
451 COG3910 Predicted ATPase [Gene 99.0 1.1E-08 2.4E-13 98.0 13.7 79 244-324 126-204 (233)
452 TIGR00606 rad50 rad50. This fa 98.9 2.9E-09 6.2E-14 132.7 11.7 109 196-315 1155-1277(1311)
453 PRK01156 chromosome segregatio 98.9 2.8E-09 6E-14 128.6 10.8 77 244-322 798-883 (895)
454 PRK06067 flagellar accessory p 98.9 3.7E-08 8E-13 100.1 15.7 162 125-323 13-187 (234)
455 TIGR02168 SMC_prok_B chromosom 98.8 3.8E-09 8.3E-14 130.4 7.6 76 244-322 1086-1165(1179)
456 TIGR03062 pip_yhgE_Cterm YhgE/ 98.8 3E-08 6.5E-13 98.7 12.4 112 523-640 58-169 (208)
457 cd01125 repA Hexameric Replica 98.8 2E-08 4.4E-13 102.4 9.9 135 136-307 1-159 (239)
458 PRK15066 inner membrane transp 98.8 9.9E-07 2.1E-11 91.0 21.5 204 431-640 6-215 (257)
459 TIGR02169 SMC_prok_A chromosom 98.8 1.2E-08 2.5E-13 126.3 8.4 77 244-323 1071-1151(1164)
460 cd01131 PilT Pilus retraction 98.8 3.5E-08 7.7E-13 97.8 10.0 57 257-322 66-122 (198)
461 TIGR03238 dnd_assoc_3 dnd syst 98.8 7.7E-09 1.7E-13 113.0 5.5 52 123-178 19-70 (504)
462 PRK02224 chromosome segregatio 98.7 2.5E-08 5.3E-13 120.2 9.4 79 244-324 778-869 (880)
463 TIGR02655 circ_KaiC circadian 98.7 1.2E-08 2.6E-13 114.6 4.9 164 126-322 10-190 (484)
464 PRK06995 flhF flagellar biosyn 98.7 7.1E-08 1.5E-12 107.0 9.5 151 124-306 244-401 (484)
465 smart00382 AAA ATPases associa 98.6 1.1E-06 2.4E-11 79.5 15.1 118 135-305 1-124 (148)
466 PRK13891 conjugal transfer pro 98.6 6.5E-07 1.4E-11 107.0 17.2 55 258-313 680-735 (852)
467 cd01130 VirB11-like_ATPase Typ 98.5 1.5E-07 3.2E-12 92.3 7.1 80 126-208 15-98 (186)
468 PRK07196 fliI flagellum-specif 98.5 1.4E-07 3.1E-12 103.3 6.6 169 122-329 142-333 (434)
469 TIGR01026 fliI_yscN ATPase Fli 98.5 1.1E-06 2.4E-11 97.0 13.0 173 122-334 150-345 (440)
470 TIGR00611 recf recF protein. A 98.5 2.2E-07 4.7E-12 100.7 7.2 60 246-308 274-342 (365)
471 PRK14079 recF recombination pr 98.5 2.8E-07 6E-12 99.4 7.8 74 247-328 263-345 (349)
472 TIGR01420 pilT_fam pilus retra 98.4 1.6E-06 3.5E-11 93.3 12.4 56 257-321 187-242 (343)
473 COG0419 SbcC ATPase involved i 98.4 8.9E-07 1.9E-11 107.0 10.0 79 243-323 811-897 (908)
474 cd02023 UMPK Uridine monophosp 98.4 2.4E-07 5.3E-12 91.5 4.0 112 138-280 1-113 (198)
475 PRK06002 fliI flagellum-specif 98.3 1E-06 2.2E-11 96.8 8.3 82 103-192 137-230 (450)
476 TIGR01248 drrC daunorubicin re 98.3 7.8E-06 1.7E-10 77.6 13.1 128 508-640 16-145 (152)
477 PRK05399 DNA mismatch repair p 98.3 9.2E-07 2E-11 105.5 8.2 67 247-317 666-738 (854)
478 PRK13898 type IV secretion sys 98.3 2.2E-05 4.8E-10 93.7 19.6 48 261-308 638-686 (800)
479 TIGR03881 KaiC_arch_4 KaiC dom 98.3 1.7E-07 3.7E-12 94.7 1.2 33 125-157 8-41 (229)
480 PRK13873 conjugal transfer ATP 98.2 2.8E-05 6.1E-10 92.9 17.8 46 263-308 633-679 (811)
481 TIGR02680 conserved hypothetic 98.2 1.6E-06 3.4E-11 108.2 7.4 60 245-307 1245-1316(1353)
482 COG0842 ABC-type multidrug tra 98.2 3.2E-05 7E-10 79.2 15.4 126 511-640 118-244 (286)
483 PLN03210 Resistant to P. syrin 98.2 7.1E-06 1.5E-10 101.6 10.8 44 129-174 200-243 (1153)
484 PRK09825 idnK D-gluconate kina 98.1 1.5E-06 3.3E-11 84.5 3.9 63 135-204 2-68 (176)
485 cd01122 GP4d_helicase GP4d_hel 98.1 5.1E-05 1.1E-09 78.6 15.5 37 124-160 18-54 (271)
486 TIGR00152 dephospho-CoA kinase 98.1 2.6E-06 5.5E-11 83.7 5.3 72 251-324 61-133 (188)
487 PF13558 SbcCD_C: Putative exo 98.1 9.1E-06 2E-10 70.2 6.5 48 245-292 30-90 (90)
488 TIGR02903 spore_lon_C ATP-depe 98.1 9.2E-06 2E-10 93.8 8.4 112 136-292 175-291 (615)
489 PF13555 AAA_29: P-loop contai 98.0 5.5E-06 1.2E-10 66.1 4.4 35 128-162 14-49 (62)
490 TIGR02524 dot_icm_DotB Dot/Icm 98.0 2E-05 4.4E-10 85.1 9.3 116 134-256 132-268 (358)
491 PRK00454 engB GTP-binding prot 98.0 8.7E-05 1.9E-09 72.5 13.1 47 246-296 146-195 (196)
492 PRK13764 ATPase; Provisional 98.0 3.6E-05 7.8E-10 87.8 11.1 64 262-332 321-400 (602)
493 TIGR03518 ABC_perm_GldF glidin 97.9 0.00054 1.2E-08 70.1 18.2 190 436-638 2-208 (240)
494 TIGR00416 sms DNA repair prote 97.9 8.7E-05 1.9E-09 82.7 13.0 62 264-325 169-247 (454)
495 cd01876 YihA_EngB The YihA (En 97.9 9.3E-06 2E-10 76.3 4.3 44 246-293 121-169 (170)
496 PRK06315 type III secretion sy 97.9 2.1E-05 4.7E-10 86.5 7.6 107 122-232 151-277 (442)
497 PF09818 ABC_ATPase: Predicted 97.9 0.0002 4.2E-09 77.9 14.7 79 247-326 322-416 (448)
498 PRK08149 ATP synthase SpaL; Va 97.9 1.5E-05 3.2E-10 87.5 6.2 55 122-177 138-192 (428)
499 cd00009 AAA The AAA+ (ATPases 97.9 2.8E-05 6E-10 71.0 7.2 53 254-307 73-130 (151)
500 TIGR03880 KaiC_arch_3 KaiC dom 97.9 0.00015 3.3E-09 73.0 12.8 57 265-322 107-177 (224)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.1e-98 Score=852.05 Aligned_cols=514 Identities=32% Similarity=0.536 Sum_probs=451.1
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CC
Q 006548 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MP 180 (641)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~--~~ 180 (641)
+..+.|+|++++.+++....+++|+|||+.++|||++||||||||||||||++|+|+.+.+...+|+|++||++.. ..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~ 102 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSF 102 (613)
T ss_pred cceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhh
Confidence 4578999999998765435689999999999999999999999999999999999999876568999999996543 23
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCc--cchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGF--FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~--~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
++.+|||.|+|.++|++||+|+|.|.+.+++|.. ..+++++|+++++++||.+++|+++| +...+++||||||||+|
T Consensus 103 ~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig-~~~~rgiSGGErkRvsi 181 (613)
T KOG0061|consen 103 RKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIG-NPGIRGLSGGERKRVSI 181 (613)
T ss_pred hheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceec-CCCCCccccchhhHHHH
Confidence 4679999999999999999999999999999874 33478899999999999999999998 55559999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (641)
|.+|++||.||||||||||||+.++.++++.|+++|++|+|||+|+|||+.+++++||++++|.+|+++|+|+++++.++
T Consensus 182 a~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~f 261 (613)
T KOG0061|consen 182 ALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEF 261 (613)
T ss_pred HHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHH
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCCCchHHHHHHHhcc--hhHHHHhhhccccCCCCCCccccChHHHHHHHHHHHhc-CHHHHHHHHHHHhh
Q 006548 339 FSNAGFPCPIMQSPSDHFLRAINTD--FDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQS-SADAAAVETMILRL 415 (641)
Q Consensus 339 f~~~g~~~~~~~~~~d~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-s~~~~~~~~~~~~~ 415 (641)
|++.|++||...||+|+++++++.+ .+..... .........++. ....+.........
T Consensus 262 f~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (613)
T KOG0061|consen 262 FSSLGFPCPELENPADFLLDLLSVDSGTRELEEA-------------------VRIAKLINKFSQTDNLKKTLEALEKSL 322 (613)
T ss_pred HHhCCCCCCCcCChHHHHHHHHccCCCchhHHhH-------------------HHHHHHhhhccccchhhhhHHHHhhhc
Confidence 9999999999999999999988743 1111000 011111222221 11111110000000
Q ss_pred hhccCCCcCCCCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Q 006548 416 TEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFN 495 (641)
Q Consensus 416 ~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~l~~~~~~~~~r~g~lff~~~~~ 495 (641)
.+. ...+.....+||.|++.|++|.+++.+|||.+.+.|+++.+++|+++|++||+++++..++++|.|++||.+.+.
T Consensus 323 ~~~--~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~ 400 (613)
T KOG0061|consen 323 STS--KKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFM 400 (613)
T ss_pred ccc--cccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHH
Confidence 011 111112278999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-hHHHHHhhHhHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHH
Q 006548 496 SLLNIA-GVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCL 574 (641)
Q Consensus 496 ~~~~~~-~v~~~~~er~vf~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~l~l~l~~ 574 (641)
.|.++. +++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|++|+|||+|++++..+|++|++++++..
T Consensus 401 ~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~ 480 (613)
T KOG0061|consen 401 TFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSS 480 (613)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 888876 6899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHhhhc
Q 006548 575 LVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 575 ~~~~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~~ 640 (641)
++++++++++++++||...|+.++++++++|+||+|||++.+.||+ |++|++|+|+++|+|||+
T Consensus 481 ~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~--~~~w~~~~S~~ry~~e~l 544 (613)
T KOG0061|consen 481 LVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPK--YFRWISYLSYFRYAFEAL 544 (613)
T ss_pred HHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccH--HHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999995 556799999999999996
No 2
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.4e-94 Score=828.45 Aligned_cols=514 Identities=25% Similarity=0.420 Sum_probs=433.1
Q ss_pred CceEEEEeEEEEEeccc------------------------ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHc
Q 006548 103 GASVVWKDLTVTIKGKR------------------------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (641)
Q Consensus 103 ~~~l~~~~ls~~~~~~~------------------------~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG 158 (641)
+..+++.|++++++..+ .+++.+|+|+|+++++||++||+||||||||||||+|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 45678888888774221 124679999999999999999999999999999999999
Q ss_pred CCCCCCCceeEEEECCEeCCC-CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccc--hHHHHHHHHHHHcCCchHH
Q 006548 159 RLPHSARMYGEVFVNGAKSEM-PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSLSDYA 235 (641)
Q Consensus 159 ~~~~~~~~~G~I~~~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~--~~~~~v~~~l~~lgL~~~~ 235 (641)
+.+++. .+|+|.+||++... ..+.++||+|++.+++.+||+||+.+++.++.+.... +++++++++++.+||.++.
T Consensus 117 ~~~~~~-~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 195 (659)
T PLN03211 117 RIQGNN-FTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195 (659)
T ss_pred CCCCCc-eeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhc
Confidence 988752 46999999987532 2356999999999999999999999988776553221 2456789999999999999
Q ss_pred hhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcC
Q 006548 236 NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 315 (641)
Q Consensus 236 ~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~ 315 (641)
|+.+| +..+++|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||..++.++|
T Consensus 196 ~t~vg-~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 196 NTIIG-NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred CceeC-CCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99987 77789999999999999999999999999999999999999999999999999889999999999987789999
Q ss_pred CEEEEEeCCeEEEEeChhHHHHHhhhcCCCCCCCCCchHHHHHHHhcchhHHHHhhhccccCCCCCCccccChHHHHHHH
Q 006548 316 DRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTL 395 (641)
Q Consensus 316 D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 395 (641)
|++++|++|++++.|+++++.+||+++|++||...||+|++++.++.+... ..... .+.....+.+
T Consensus 275 D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~-----~~~~~---------~~~~~~~~~l 340 (659)
T PLN03211 275 DSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQT-----DGVSE---------REKPNVKQSL 340 (659)
T ss_pred ceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccC-----CCccc---------cccchHHHHH
Confidence 999999999999999999999999999999999999999999987653210 00000 0000112234
Q ss_pred HHHHhcCHHHHHHHHHHHh--hhh----------ccC-CCcCCCCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH
Q 006548 396 EATYQSSADAAAVETMILR--LTE----------KEG-PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMI 462 (641)
Q Consensus 396 ~~~~~~s~~~~~~~~~~~~--~~~----------~~~-~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~ 462 (641)
.+.|++... .+..+.... ... .+. ...+..+.++||+|+.+|++|++++ +||+.+.++|++++++
T Consensus 341 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~ 418 (659)
T PLN03211 341 VASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIA 418 (659)
T ss_pred HHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHH
Confidence 444532111 111111000 000 000 0011235578999999999999998 8999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHhhHhHHHhhccCCCcchHHHHHHHHHHHHHHHHH
Q 006548 463 LTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLN-IAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFL 541 (641)
Q Consensus 463 ~~l~~G~~f~~l~~~~~~~~~r~g~lff~~~~~~~~~-~~~v~~~~~er~vf~rE~~~~~Y~~~~y~la~~l~elP~~~~ 541 (641)
+|+++|++||+++ +.++++|.|++||++++.++.+ +..++.|+.||++|+||+.+|+|++++|++|++++|+|+.++
T Consensus 419 ~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~ 496 (659)
T PLN03211 419 AALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELI 496 (659)
T ss_pred HHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999985 6889999999999998877665 577899999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhceecCCCCCCcc
Q 006548 542 ISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGP 621 (641)
Q Consensus 542 ~~~if~~i~Y~m~Gl~~~~~~F~~f~l~l~l~~~~~~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~ 621 (641)
.+++|++|+|||+||++++.+|++|+++++++.++++++|+++++++||+.+|+.+++++++++++|+||+++ +||+
T Consensus 497 ~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~- 573 (659)
T PLN03211 497 LPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPS- 573 (659)
T ss_pred HHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 7985
Q ss_pred ccccccccccHHHHHhhhc
Q 006548 622 VWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 622 ~W~~w~~yis~~~Ya~e~~ 640 (641)
|+.|++|+||++|||||+
T Consensus 574 -~~~W~~ylS~~~y~~eal 591 (659)
T PLN03211 574 -CMAWIKYISTTFYSYRLL 591 (659)
T ss_pred -HHHHHHHhCHHHHHHHHH
Confidence 445699999999999997
No 3
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=2.4e-93 Score=817.15 Aligned_cols=500 Identities=25% Similarity=0.409 Sum_probs=441.5
Q ss_pred cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCceEEEEcCCCccCCCCC
Q 006548 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLT 198 (641)
Q Consensus 121 ~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~--~~~~~~yv~Q~~~l~~~lT 198 (641)
.++.+|+|+|+++++||++||+|||||||||||++|+|+.+++...+|+|.+||.+... .++.++||+|++.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 35779999999999999999999999999999999999988753457999999987532 2356899999999999999
Q ss_pred HHHHHHHHHHhcCCCcc--chHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCC
Q 006548 199 VREYLYYSALLQLPGFF--CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (641)
Q Consensus 199 V~E~l~~~~~~~~~~~~--~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPts 276 (641)
|+|||.|++.++.+... .+++++++++++.+||.+++|+.+|.....++|||||||||+||+||+.+|++|||||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999988766432 2355679999999999999999998322467999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHhhhcCCCCCCCCCchHHH
Q 006548 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHF 356 (641)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~d~~ 356 (641)
|||+.++..+++.|++++++|+|+|+++|||+.+++++||++++|++|+++++|+++++.+||+++|++||...||+|++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 275 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFY 275 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 99999999999999999988999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHHhcchhHHHHhhhccccCCCCCCccccChHHHHHHHHHHHhcCHHHHHHHHHHHhhhhcc-----C--CCcCCCCCC
Q 006548 357 LRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKE-----G--PFLKSKGKA 429 (641)
Q Consensus 357 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~ 429 (641)
++.++.+.+. +....+..+++.+.|+.++.+.+..+........+ . .....++..
T Consensus 276 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (617)
T TIGR00955 276 VQVLAVIPGS------------------ENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNA 337 (617)
T ss_pred HHHhhcCccc------------------ccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCC
Confidence 9877643211 01112344567777777766555443332111110 0 011235678
Q ss_pred CHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHh
Q 006548 430 SSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNI-AGVPALMK 508 (641)
Q Consensus 430 s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~l~~~~~~~~~r~g~lff~~~~~~~~~~-~~v~~~~~ 508 (641)
+|++|+++|++|++++++|||.++.+|+++++++|+++|++||+++++++++++|.|++|+++++.+|.++ ..++.|+.
T Consensus 338 ~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~ 417 (617)
T TIGR00955 338 SWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTA 417 (617)
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998875 56789999
Q ss_pred hHhHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006548 509 EIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIW 588 (641)
Q Consensus 509 er~vf~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~l~l~l~~~~~~sl~~~i~~~~ 588 (641)
||.+|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++.+|++|+++++++.++++++++++++++
T Consensus 418 er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~ 497 (617)
T TIGR00955 418 ELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAF 497 (617)
T ss_pred HHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHhhhc
Q 006548 589 KDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 589 ~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~~ 640 (641)
||..+|..+++++++++++|+||++++++||+ |+.|++|+||++||+||+
T Consensus 498 ~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~--~~~W~~~isp~~ya~~al 547 (617)
T TIGR00955 498 SSTSMALTVGPPFVIPFLLFGGFFINSDSIPV--YFKWLSYLSWFRYGNEGL 547 (617)
T ss_pred CchHHHHHHHHHHHHHHHHHhhcccChhhccH--HHHHHHHcCHHHHHHHHH
Confidence 99999999999999999999999999999995 445799999999999997
No 4
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-94 Score=834.48 Aligned_cols=509 Identities=27% Similarity=0.421 Sum_probs=460.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-C-CC
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-M-PY 181 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~-~-~~ 181 (641)
....|+|++++++.+. +++++|+||++.++||.++||||+||||||||||+|+|+...+ .++|+|++||.+.. . -.
T Consensus 786 ~V~~w~dl~~~~~~qG-~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-~I~Gdi~i~G~p~~q~tF~ 863 (1391)
T KOG0065|consen 786 DVFYWVDLPYEMPIQG-GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-YIEGDILISGFPKDQETFA 863 (1391)
T ss_pred ceEEEEeCCccccccc-cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-eEEeEEEECCeeCchhhhc
Confidence 3578999999986543 6788999999999999999999999999999999999997654 58999999999865 2 34
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccch--HHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ--RKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~--~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
+.+|||.|+|.|.+.+||+|.|.|+|.+|+|...+. +.+.|+++++.++|++++|.+|| ..- .|||.+||||++||
T Consensus 864 R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG-~~G-~GLs~eQRKrLTIg 941 (1391)
T KOG0065|consen 864 RVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVG-LPG-SGLSTEQRKRLTIG 941 (1391)
T ss_pred cccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhcc-CCC-CCCCHHHhceeeEE
Confidence 679999999999999999999999999999876543 55789999999999999999998 544 89999999999999
Q ss_pred HHHHhCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe-CCeEEEEeChhH---
Q 006548 260 RELVMRP-HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS-NGNTLFFGETLA--- 334 (641)
Q Consensus 260 ~aL~~~P-~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~-~G~iv~~G~~~~--- 334 (641)
.+|+.+| .||||||||||||+.++..|++.+|++++.|+||+||||||+..+++.||++++|+ +|++||.|+..+
T Consensus 942 VELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~ 1021 (1391)
T KOG0065|consen 942 VELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSS 1021 (1391)
T ss_pred EEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccH
Confidence 9999999 89999999999999999999999999999999999999999999999999999997 689999999754
Q ss_pred -HHHHhhhc-CCCCCCCCCchHHHHHHHhcchhHHHHhhhccccCCCCCCccccChHHHHHHHHHHHhcCHHHHHHHHHH
Q 006548 335 -CLQHFSNA-GFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI 412 (641)
Q Consensus 335 -~~~~f~~~-g~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~ 412 (641)
+++||+++ |.+||...||||+++++++..... ..-.++.+.|++|++++++.+.+
T Consensus 1022 ~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~-----------------------~~~~D~a~~w~~S~e~k~~~e~v 1078 (1391)
T KOG0065|consen 1022 KLIEYFESIGGVKCISDENPAEWMLEVIGAGAEA-----------------------SLSVDFAEIWKNSEEYKRNKELV 1078 (1391)
T ss_pred HHHHHHHhcCCccCCCCCChHHHHHhhccccccc-----------------------ccCccHHHHHhccHHHHHHHHHH
Confidence 56799999 589999999999999988754211 00115788999999999998888
Q ss_pred HhhhhccC-----CCcCCCCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 006548 413 LRLTEKEG-----PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAA 487 (641)
Q Consensus 413 ~~~~~~~~-----~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~l~~~~~~~~~r~g~ 487 (641)
+++.+... ...++++++|+|.|++.++||++..+||+|.|+++|++++++.||++|+.||++|++.+++||.+|+
T Consensus 1079 ~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a 1158 (1391)
T KOG0065|consen 1079 KELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGA 1158 (1391)
T ss_pred HHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHH
Confidence 76543221 1234569999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhH-HHHHhhHhHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHH
Q 006548 488 IFVFVSFNSLLNIAGV-PALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYF 566 (641)
Q Consensus 488 lff~~~~~~~~~~~~v-~~~~~er~vf~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f 566 (641)
+|+++++......+.. +....||.+++||+.+|+||+.+|++|++++|+|+.++++++|.+|.|+|+||.+++.+|++|
T Consensus 1159 ~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f 1238 (1391)
T KOG0065|consen 1159 AYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWF 1238 (1391)
T ss_pred HHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHH
Confidence 9999998887776655 556678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHhhhcC
Q 006548 567 VLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKACI 641 (641)
Q Consensus 567 ~l~l~l~~~~~~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~~~ 641 (641)
++.++++.++.+++|+++.+++||.++|.++.+.++.++.+|+|++++++.||+ +|. ||||+||+.|-+|++|
T Consensus 1239 ~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~-fW~-wmy~lsP~ty~l~gli 1311 (1391)
T KOG0065|consen 1239 LLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPK-FWI-WMYYLSPVTYTLEGLI 1311 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccc-eee-eeeecCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997 576 5999999999999985
No 5
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.6e-92 Score=861.29 Aligned_cols=512 Identities=21% Similarity=0.362 Sum_probs=448.8
Q ss_pred CceEEEEeEEEEEeccc--------ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 006548 103 GASVVWKDLTVTIKGKR--------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (641)
Q Consensus 103 ~~~l~~~~ls~~~~~~~--------~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G 174 (641)
+..++|+||+|.++.+. ...+.+|+|||+.++|||++||+||||||||||||+|+|+.+++ ..+|+|.+||
T Consensus 865 ~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~inG 943 (1470)
T PLN03140 865 PLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISG 943 (1470)
T ss_pred cceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEECC
Confidence 45799999999996321 13457999999999999999999999999999999999997643 3579999999
Q ss_pred EeCCC--CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccc--hHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCH
Q 006548 175 AKSEM--PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (641)
Q Consensus 175 ~~~~~--~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~--~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSG 250 (641)
.+... .++.+|||+|++.+++.+||+|||.|++.++.+.... ++.++++++++.+||.+++|+.+| +..+++|||
T Consensus 944 ~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg-~~~~~~LSg 1022 (1470)
T PLN03140 944 FPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVG-LPGVTGLST 1022 (1470)
T ss_pred ccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccC-CCCCCCcCH
Confidence 86532 2356899999999999999999999998877654322 245679999999999999999987 556689999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC-CeEEEE
Q 006548 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTLFF 329 (641)
Q Consensus 251 GerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~-G~iv~~ 329 (641)
||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++++
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~ 1102 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS 1102 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEE
Confidence 9999999999999999999999999999999999999999999988999999999998778999999999996 899999
Q ss_pred eCh----hHHHHHhhhc-CCC-CCCCCCchHHHHHHHhcchhHHHHhhhccccCCCCCCccccChHHHHHHHHHHHhcCH
Q 006548 330 GET----LACLQHFSNA-GFP-CPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSA 403 (641)
Q Consensus 330 G~~----~~~~~~f~~~-g~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ 403 (641)
|++ +++.+||+++ |++ ||+..||+||+++.++.+.+. . ...++.+.|+.|+
T Consensus 1103 G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~--------------------~---~~~d~~~~~~~s~ 1159 (1470)
T PLN03140 1103 GPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV--------------------K---LGIDFAEHYKSSS 1159 (1470)
T ss_pred CCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc--------------------c---ccchHHHHHhccH
Confidence 996 5789999997 675 999999999999887543110 0 0125778888888
Q ss_pred HHHHHHHHHHhhhhcc----CCCcCCCCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCH-
Q 006548 404 DAAAVETMILRLTEKE----GPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSL- 478 (641)
Q Consensus 404 ~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~l~~~~- 478 (641)
.+++..+.+.+..... .....++++.|+|+|+++|++|+++++||||.++++|+++++++|+++|++||++++++
T Consensus 1160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~ 1239 (1470)
T PLN03140 1160 LYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRS 1239 (1470)
T ss_pred HHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcc
Confidence 8777665554332211 11123568999999999999999999999999999999999999999999999999765
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHh-hHHHHHhhHhHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Q 006548 479 --SSVVTRVAAIFVFVSFNSLLNIA-GVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVG 555 (641)
Q Consensus 479 --~~~~~r~g~lff~~~~~~~~~~~-~v~~~~~er~vf~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~G 555 (641)
+++++|.|++|+++++.++.++. .+|.|..||++|+|||++|+|++.+|++|++++|+|+.++.+++|++|+|||+|
T Consensus 1240 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~G 1319 (1470)
T PLN03140 1240 NANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVA 1319 (1470)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 57888999999999998887765 469999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHH
Q 006548 556 LRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTY 635 (641)
Q Consensus 556 l~~~~~~F~~f~l~l~l~~~~~~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Y 635 (641)
|++++.+||+|+++++++.++++++|+++++++||..+|..+++++++++++|+||++++++||. +|. |++|+||++|
T Consensus 1320 l~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~-~~~-W~~~isp~~y 1397 (1470)
T PLN03140 1320 FEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPK-WWV-WYYWICPVAW 1397 (1470)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCch-HHH-HHHHcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999996 455 6999999999
Q ss_pred HhhhcC
Q 006548 636 SIKACI 641 (641)
Q Consensus 636 a~e~~~ 641 (641)
++||+.
T Consensus 1398 ~~~~l~ 1403 (1470)
T PLN03140 1398 TVYGLI 1403 (1470)
T ss_pred HHhhhH
Confidence 999973
No 6
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=8.4e-92 Score=860.62 Aligned_cols=503 Identities=22% Similarity=0.342 Sum_probs=439.9
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeCCC----CCceEEEEcCCCccCCC
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-ARMYGEVFVNGAKSEM----PYGSYGFVERETTLIGS 196 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~-~~~~G~I~~~G~~~~~----~~~~~~yv~Q~~~l~~~ 196 (641)
.+++|+|+|+.+++||+++|+||||||||||||+|+|+.++. ...+|+|.+||++... .++.++||+|++.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 457999999999999999999999999999999999997421 1246999999987521 23469999999999999
Q ss_pred CCHHHHHHHHHHhcCCCc----cc--hHHHH-HHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEE
Q 006548 197 LTVREYLYYSALLQLPGF----FC--QRKNV-VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVL 269 (641)
Q Consensus 197 lTV~E~l~~~~~~~~~~~----~~--~~~~~-v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iL 269 (641)
+||+|||.|++.++.+.. .. +..++ ++++++.+||.+++|+.+| +..+++|||||||||+||++|+.+|+||
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg-~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVG-NDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeC-CCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999988765421 11 12223 4678999999999999997 7889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHhhhcCCCCCC
Q 006548 270 FIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPI 348 (641)
Q Consensus 270 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~ 348 (641)
||||||+|||+.++..+++.|++++++ |+|+|+++|||.++++++||+|++|++|+++++|+++++.+||+++|++||+
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~ 311 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPD 311 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999965 9999999999988999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHhcchhHHHHhhhccccCCCCCCccccChHHHHHHHHHHHhcCHHHHHHHHHHHhhhhc----------
Q 006548 349 MQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEK---------- 418 (641)
Q Consensus 349 ~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~---------- 418 (641)
+.||+|++++..+.+. +. ........ .. ...+++++.|+.|+.++++.+.++...+.
T Consensus 312 ~~n~aDfl~~~~~~~~-~~--~~~~~e~~------~~----~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1394)
T TIGR00956 312 RQTTADFLTSLTSPAE-RQ--IKPGYEKK------VP----RTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAY 378 (1394)
T ss_pred CCChHHHHHhccChhh-hh--cccccccc------CC----CCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHH
Confidence 9999998887765431 11 11111110 01 12356888898888776655544321110
Q ss_pred ---------cCCCcCCCCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006548 419 ---------EGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIF 489 (641)
Q Consensus 419 ---------~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~l~~~~~~~~~r~g~lf 489 (641)
......+.+..|+|+|+++|++|++++++|||.++++|+++++++|+++|++||+++++++++++|.|++|
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf 458 (1394)
T TIGR00956 379 RESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALF 458 (1394)
T ss_pred HHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Confidence 00111235788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHhhHhHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHH
Q 006548 490 VFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLN 569 (641)
Q Consensus 490 f~~~~~~~~~~~~v~~~~~er~vf~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~l~ 569 (641)
|++++.+|+++..++.++.||++|+||+++++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++
T Consensus 459 ~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~ 538 (1394)
T TIGR00956 459 FAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLI 538 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHhhhc
Q 006548 570 FFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 570 l~l~~~~~~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~~ 640 (641)
++++.++++++++++++++||+.+|+.+++++++++++|+||++++++||. |+.|++||||++|||||+
T Consensus 539 ~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~--~~~W~~yisp~~yafeal 607 (1394)
T TIGR00956 539 LFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLG--WSKWIYYVNPLAYAFESL 607 (1394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccH--HHHHHHHcCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999995 556799999999999997
No 7
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.2e-90 Score=845.62 Aligned_cols=506 Identities=22% Similarity=0.365 Sum_probs=439.2
Q ss_pred cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCceEEEEcCCCccCCCCC
Q 006548 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLT 198 (641)
Q Consensus 121 ~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~--~~~~~~yv~Q~~~l~~~lT 198 (641)
.++.||+|+|+.++|||+++|+||||||||||||+|+|+++++...+|+|.+||++... .++.++||+|++.+++.+|
T Consensus 176 ~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred ccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence 34679999999999999999999999999999999999998864457999999987532 2467999999999999999
Q ss_pred HHHHHHHHHHhcCCCc-------c--chH------------------------HHHHHHHHHHcCCchHHhhhhcCCCCC
Q 006548 199 VREYLYYSALLQLPGF-------F--CQR------------------------KNVVEDAIHAMSLSDYANKLIGGHCYM 245 (641)
Q Consensus 199 V~E~l~~~~~~~~~~~-------~--~~~------------------------~~~v~~~l~~lgL~~~~~~~ig~~~~~ 245 (641)
|+|||.|++.++.+.. . .++ +..++++++.+||.+++|+.+| +..+
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg-~~~~ 334 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVG-DEMI 334 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeC-Cccc
Confidence 9999999987653211 0 000 0135779999999999999997 8889
Q ss_pred CCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 006548 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (641)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (641)
++|||||||||+||++|+.+|++|||||||+|||+.++.++++.|+++++ .|+|+|+++|||..+++++||+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 99999999999999999999999999999999999999999999999986 58999999999988999999999999999
Q ss_pred eEEEEeChhHHHHHhhhcCCCCCCCCCchHHHHHHHhcchhHHHHhhhccccCCCCCCccccChHHHHHHHHHHHhcCHH
Q 006548 325 NTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSAD 404 (641)
Q Consensus 325 ~iv~~G~~~~~~~~f~~~g~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~ 404 (641)
+++|+|+++++.+||+++|++||++.||+|++++.++.+..+ +.|... +. +. .....+++.+.|+++..
T Consensus 415 ~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~-----~~~~~~--~~---p~-~~~~~~~~~~~~~~s~~ 483 (1470)
T PLN03140 415 QIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQE-----QYWADR--NK---PY-RYISVSEFAERFKSFHV 483 (1470)
T ss_pred eEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhh-----hhhhcc--CC---cc-ccCCHHHHHHHHHhcHH
Confidence 999999999999999999999999999999888776543111 111110 00 00 00123568889999988
Q ss_pred HHHHHHHHHhhhhc----cCCCcCCCCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCH--
Q 006548 405 AAAVETMILRLTEK----EGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSL-- 478 (641)
Q Consensus 405 ~~~~~~~~~~~~~~----~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~l~~~~-- 478 (641)
++++.+++....++ ......+++..+++.|++.|++|++++++||+.++..|+++.+++|+++|++||+++.++
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~ 563 (1470)
T PLN03140 484 GMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRN 563 (1470)
T ss_pred HHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 77666554432111 111122468899999999999999999999999999999999999999999999997543
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHhHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccc
Q 006548 479 -SSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLR 557 (641)
Q Consensus 479 -~~~~~r~g~lff~~~~~~~~~~~~v~~~~~er~vf~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~ 557 (641)
.+.+.+.|++||++++.+|.+++.++.++.||+||+|||++++|++++|++|++++|+|+.++.+++|++|+|||+||+
T Consensus 564 ~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~ 643 (1470)
T PLN03140 564 EEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFA 643 (1470)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCC
Confidence 4567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHh
Q 006548 558 DEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSI 637 (641)
Q Consensus 558 ~~~~~F~~f~l~l~l~~~~~~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~ 637 (641)
+++++||+|+++++++.++++++++++++++|++.+|+.+++++++++++|+||++++++||+ |+.|++||||++|||
T Consensus 644 ~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~--w~~W~~yisp~~Ya~ 721 (1470)
T PLN03140 644 PEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPN--WWEWAYWVSPLSYGF 721 (1470)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCch--HHHHHHHhCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999995 555699999999999
Q ss_pred hhc
Q 006548 638 KAC 640 (641)
Q Consensus 638 e~~ 640 (641)
||+
T Consensus 722 eal 724 (1470)
T PLN03140 722 NAL 724 (1470)
T ss_pred HHH
Confidence 997
No 8
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.1e-89 Score=839.49 Aligned_cols=508 Identities=27% Similarity=0.414 Sum_probs=444.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCce
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGS 183 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-~~~~ 183 (641)
.++|+||+++++.+ +..+.+|+|||+.+++||++||+||||||||||||+|+|+.+++...+|+|.+||++... .++.
T Consensus 759 ~l~~~nl~~~~~~~-~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 759 IFHWRNLTYEVKIK-KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 (1394)
T ss_pred eEEEEeeEEEecCC-CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence 58999999998532 234679999999999999999999999999999999999987432245999999988632 2457
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccc--hHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~--~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
++||+|++.+++.+||+|||.|++.++.+.... +++++++++++.+||.+++|+.++ . ...+|||||||||+||+|
T Consensus 838 i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~-~-~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVG-V-PGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred eeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeC-C-CCCCCCHHHhhHHHHHHH
Confidence 999999999999999999999998877654322 245679999999999999999886 2 234899999999999999
Q ss_pred HHhCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCC-eEEEEeCh----hHH
Q 006548 262 LVMRPH-VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG-NTLFFGET----LAC 335 (641)
Q Consensus 262 L~~~P~-iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G-~iv~~G~~----~~~ 335 (641)
|+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|||...+++.||++++|++| +++++|++ +++
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~ 995 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTI 995 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchH
Confidence 999997 999999999999999999999999999889999999999987778899999999987 99999997 568
Q ss_pred HHHhhhcCC-CCCCCCCchHHHHHHHhcchhHHHHhhhccccCCCCCCccccChHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 006548 336 LQHFSNAGF-PCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILR 414 (641)
Q Consensus 336 ~~~f~~~g~-~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~ 414 (641)
.+||++.|+ +||...||+|++++.++.+... ...+++.+.|+.|...+++.+.++.
T Consensus 996 ~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~-----------------------~~~~~~~~~~~~s~~~~~~~~~~~~ 1052 (1394)
T TIGR00956 996 INYFEKHGAPKCPEDANPAEWMLEVIGAAPGA-----------------------HANQDYHEVWRNSSEYQAVKNELDR 1052 (1394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHhhccccc-----------------------chhccHHHHHhcCHHHHHHHHHHHH
Confidence 899999996 9999999999999987643110 0012456677777776665554433
Q ss_pred hhhcc----C---CCcCCCCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 006548 415 LTEKE----G---PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAA 487 (641)
Q Consensus 415 ~~~~~----~---~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~l~~~~~~~~~r~g~ 487 (641)
..... . .....++++||++|+++|++|+++++||||.++++|+++++++|+++|++||++++++.+++||+|+
T Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~ 1132 (1394)
T TIGR00956 1053 LEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFA 1132 (1394)
T ss_pred hhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 22110 0 0112468899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhHhHH-HhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHH----
Q 006548 488 IFVFVSFNSLLNIAGVPALMKEIKTY-ASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSL---- 562 (641)
Q Consensus 488 lff~~~~~~~~~~~~v~~~~~er~vf-~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~---- 562 (641)
+|+++.+..+.....+|.|+.||.+| +||+.+|+|++.+|++|++++|+|+.++.+++|.+|+|||+||++++..
T Consensus 1133 ~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~ 1212 (1394)
T TIGR00956 1133 VFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQV 1212 (1394)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccc
Confidence 99999888887777889999999885 9999999999999999999999999999999999999999999998876
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHhhh
Q 006548 563 ---LMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKA 639 (641)
Q Consensus 563 ---F~~f~l~l~l~~~~~~sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~ 639 (641)
|++|+++++++.++++++|+++++++||..+|..+++++++++++|+||++++++||. +|. |++|+||++|++||
T Consensus 1213 ~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~-~~~-w~~~~sp~~y~~~~ 1290 (1394)
T TIGR00956 1213 HERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPG-FWI-FMYRCSPFTYLVQA 1290 (1394)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcH-HHh-HHHhcCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999996 566 59999999999999
Q ss_pred c
Q 006548 640 C 640 (641)
Q Consensus 640 ~ 640 (641)
+
T Consensus 1291 l 1291 (1394)
T TIGR00956 1291 L 1291 (1394)
T ss_pred H
Confidence 7
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-81 Score=726.64 Aligned_cols=505 Identities=26% Similarity=0.427 Sum_probs=451.9
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCceEEEEcCCCccCCCCCH
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLTV 199 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~--~~~~~~yv~Q~~~l~~~lTV 199 (641)
...+|+|+|+.++||+++.++||+||||||||++|+|-++......|+|.+||.+.+. .++.++|+.|+|.|+|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 4579999999999999999999999999999999999987665567999999987432 35679999999999999999
Q ss_pred HHHHHHHHHhcCCCccc---hHHH----HHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEe
Q 006548 200 REYLYYSALLQLPGFFC---QRKN----VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFID 272 (641)
Q Consensus 200 ~E~l~~~~~~~~~~~~~---~~~~----~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLD 272 (641)
+|+|.|+++++.+...- .+++ ..+.+++.+||++|+|+++| |+.+||+||||||||++|.+++.+++++++|
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VG-nd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVG-NDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceec-ccccccccCcccceeeeeeeeecCcceeeee
Confidence 99999999998774321 1222 56789999999999999998 9999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHhhhcCCCCCCCCC
Q 006548 273 EPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQS 351 (641)
Q Consensus 273 EPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~ 351 (641)
|+|+|||+.++.++++.||++++. +.|++++++||+++++++||+|++|.+|+++|+||.+++++||+++|+.||++.+
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~ 365 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKG 365 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccC
Confidence 999999999999999999999854 8999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhcchhHHHHhhhccccCCCCCCccccChHHHHHHHHHHHhcCHHHHHHHHHHHhhhhcc----CCCcCCCC
Q 006548 352 PSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKE----GPFLKSKG 427 (641)
Q Consensus 352 ~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~----~~~~~~~~ 427 (641)
++|++.+..+. .++ .+.|..++. .-......++.+.|.+++.++++...+....++. .....++|
T Consensus 366 ~ADfLt~vts~-k~~----~~~~~~~~~------~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y 434 (1391)
T KOG0065|consen 366 TADFLTEVTSK-KDQ----EQYWNKRSK------PYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKY 434 (1391)
T ss_pred HHHHHHHhhcC-ccc----cccccccCC------CcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCce
Confidence 99977665541 111 112221110 0111123579999999999998887776543321 12234679
Q ss_pred CCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 006548 428 KASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLG-HSLSSVVTRVAAIFVFVSFNSLLNIAGVPAL 506 (641)
Q Consensus 428 ~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~l~-~~~~~~~~r~g~lff~~~~~~~~~~~~v~~~ 506 (641)
..++|.|++.|+.|.|+.+.||..++..++++.+++|+++|++|++.+ .+..+...|+|++||++++.+|+++++++..
T Consensus 435 ~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~ 514 (1391)
T KOG0065|consen 435 SVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALT 514 (1391)
T ss_pred eccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 8888899999999999999999999999999
Q ss_pred HhhHhHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006548 507 MKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVAS 586 (641)
Q Consensus 507 ~~er~vf~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~l~l~l~~~~~~sl~~~i~~ 586 (641)
++.|+||+|||...+|++++|.++.+++++|+.++.+++|.+|+||++||++++++||+|+++++++.+|+.++++++++
T Consensus 515 ~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~ 594 (1391)
T KOG0065|consen 515 FQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIAS 594 (1391)
T ss_pred HhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHhhhc
Q 006548 587 IWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 587 ~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~~ 640 (641)
+++++..|+.++++.++.+.+++||+|+.+.||+ |+.|++||||+.||+|++
T Consensus 595 l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~--W~~Wi~yinPl~Y~fesl 646 (1391)
T KOG0065|consen 595 LSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPP--WFRWIAYINPLMYAFESL 646 (1391)
T ss_pred hcchHHHHhhHhHHHHHHHHHHcceeeeccccch--HHHHHHHHCHHHHHHHHH
Confidence 9999999999999999999999999999999995 777899999999999986
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7e-53 Score=406.71 Aligned_cols=218 Identities=26% Similarity=0.348 Sum_probs=194.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.| +...+|+|||+++++||+++|+||||||||||||||+|+.++++ |+|.++|.+...
T Consensus 2 mi~i~~l~K~f-----g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~---G~I~i~g~~~~~~~~~~ 73 (240)
T COG1126 2 MIEIKNLSKSF-----GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDS---GSITVDGEDVGDKKDIL 73 (240)
T ss_pred eEEEEeeeEEe-----CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCC---ceEEECCEeccchhhHH
Confidence 58999999999 45689999999999999999999999999999999999999986 999999975421
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
.++.+|+|+|+..|||++||.||+.++...-......+.+++..++|+.+||.+.+|. ||.+|||||||||+|
T Consensus 74 ~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~------yP~qLSGGQqQRVAI 147 (240)
T COG1126 74 KLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADA------YPAQLSGGQQQRVAI 147 (240)
T ss_pred HHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhh------CccccCcHHHHHHHH
Confidence 2357999999999999999999999876543322223456678899999999998887 566999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||||+.+|+++++|||||+|||....++++.+++|+++|.|.|++||.. ..+.+.+|||++|++|+++..|++++.+.
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM-~FAr~VadrviFmd~G~iie~g~p~~~f~ 225 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEM-GFAREVADRVIFMDQGKIIEEGPPEEFFD 225 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechh-HHHHHhhheEEEeeCCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999999999999999998886 58999999999999999999999887653
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.2e-50 Score=404.93 Aligned_cols=221 Identities=25% Similarity=0.308 Sum_probs=197.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++||++.|..++.....+|+|||++|++||+++|+|.||||||||+|+|.++..|++ |+|.++|.+...
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pts---G~v~v~G~di~~l~~~~L 78 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS---GSVFVDGQDLTALSEAEL 78 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCC---ceEEEcCEecccCChHHH
Confidence 78999999997543334679999999999999999999999999999999999999986 999999977431
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
.++++|+++|+..|+...||.||+.|+..+.. ....+.++++.++|+.+||.+.+++ ||.+|||||||||+
T Consensus 79 r~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag-~~k~ei~~RV~elLelVgL~dk~~~------yP~qLSGGQKQRVa 151 (339)
T COG1135 79 RQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG-VPKAEIKQRVAELLELVGLSDKADR------YPAQLSGGQKQRVA 151 (339)
T ss_pred HHHHhhccEEeccccccccchHHhhhhhhHhhcC-CCHHHHHHHHHHHHHHcCChhhhcc------CchhcCcchhhHHH
Confidence 24679999999999999999999999987653 1233578899999999999988876 56699999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||||+.+|+||++|||||+|||.+...|+++|+++.++ |.||++++|++ +.+.++||||.+|++|++++.|+..+++
T Consensus 152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999999999999999999999999999999999999855 99999988886 6899999999999999999999998876
Q ss_pred H
Q 006548 337 Q 337 (641)
Q Consensus 337 ~ 337 (641)
.
T Consensus 231 ~ 231 (339)
T COG1135 231 A 231 (339)
T ss_pred c
Confidence 4
No 12
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-49 Score=389.22 Aligned_cols=226 Identities=25% Similarity=0.422 Sum_probs=200.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-----~ 180 (641)
++++||++.|. .+++++|+|++|++||+++++|||||||||+||+|.+++.|++ |+|++||+++.. .
T Consensus 2 I~~~nvsk~y~-----~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~---G~I~i~g~~i~~~d~~~L 73 (309)
T COG1125 2 IEFENVSKRYG-----NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTS---GEILIDGEDISDLDPVEL 73 (309)
T ss_pred ceeeeeehhcC-----CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCC---ceEEECCeecccCCHHHH
Confidence 68999999994 5689999999999999999999999999999999999999986 999999998643 2
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc--hHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
++++|||-|+..|||++||.||+.+-..+..- ...+.+++++|+|+.+||+ +++++ +|++|||||+|||.+
T Consensus 74 Rr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w-~k~~i~~r~~ELl~lvgL~p~~~~~R------yP~eLSGGQQQRVGv 146 (309)
T COG1125 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLLGW-DKERIKKRADELLDLVGLDPSEYADR------YPHELSGGQQQRVGV 146 (309)
T ss_pred HHhhhhhhhhcccCCCccHHHHHHhhhhhcCC-CHHHHHHHHHHHHHHhCCCHHHHhhc------CchhcCcchhhHHHH
Confidence 46799999999999999999999887655422 2234678899999999996 46766 677999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||||+.+|+||+||||+++|||.++.++-+.++++.++ |+|||++||+. +|+.+++|||++|++|+++.+++|++++.
T Consensus 147 ~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDi-dEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI-DEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCH-HHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999866 99999988876 68999999999999999999999998864
Q ss_pred HhhhcCCCCCCCCCchHHHHHHH
Q 006548 338 HFSNAGFPCPIMQSPSDHFLRAI 360 (641)
Q Consensus 338 ~f~~~g~~~~~~~~~~d~~l~~~ 360 (641)
||++.|+..+
T Consensus 226 -------------~Pan~FV~~f 235 (309)
T COG1125 226 -------------NPANDFVEDF 235 (309)
T ss_pred -------------CccHHHHHHH
Confidence 5777777654
No 13
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4.3e-49 Score=397.91 Aligned_cols=217 Identities=27% Similarity=0.401 Sum_probs=192.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|. ++.+|+|+|+++++||+++|+||||||||||||+|+|+++|.+ |+|.++|+++..
T Consensus 2 ~L~~~~ls~~y~-----~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~---G~V~l~g~~i~~~~~ke 73 (258)
T COG1120 2 MLEVENLSFGYG-----GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKS---GEVLLDGKDIASLSPKE 73 (258)
T ss_pred eeEEEEEEEEEC-----CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCC---CEEEECCCchhhcCHHH
Confidence 588999999994 5689999999999999999999999999999999999999975 999999987542
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCc--cc-hHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF--FC-QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~--~~-~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
..+.++||||.......+||+|.+.++..-+.... .+ ++.+.++++|+.+|+.+++++.+. +|||||||||
T Consensus 74 lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~------~LSGGerQrv 147 (258)
T COG1120 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD------ELSGGERQRV 147 (258)
T ss_pred HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc------ccChhHHHHH
Confidence 23579999999988889999999987643211111 11 244579999999999999999765 9999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
.|||||+++|++|+||||||+||..++.++++++++++ ++|.|||+++|++. .+.++||++++|++|++++.|+|+++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~ev 226 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEEV 226 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcchh
Confidence 99999999999999999999999999999999999999 55999999999885 78999999999999999999999887
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
+
T Consensus 227 l 227 (258)
T COG1120 227 L 227 (258)
T ss_pred c
Confidence 6
No 14
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-48 Score=387.73 Aligned_cols=204 Identities=30% Similarity=0.410 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 184 (641)
.+.++++++.|. ...+|+|+|+++.+||+++|+||||||||||||+|+|+.+|++ |+|.++|.+...+...+
T Consensus 3 ~l~i~~v~~~f~-----~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~---G~V~~~g~~v~~p~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFG-----GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTS---GEVLLDGRPVTGPGPDI 74 (248)
T ss_pred eEEEEeeEEEeC-----ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCcccCCCCCCE
Confidence 578999999994 3689999999999999999999999999999999999999986 99999999876666789
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHh
Q 006548 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~ 264 (641)
+||+|++.|+|.+||.||+.++..... ....+.+++++++|+.+||.++.++ +|++|||||||||+|||||+.
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~-~~~~e~~~~a~~~L~~VgL~~~~~~------~P~qLSGGMrQRVaiARAL~~ 147 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRG-KSKAEARERAKELLELVGLAGFEDK------YPHQLSGGMRQRVAIARALAT 147 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccc-cchHhHHHHHHHHHHHcCCcchhhc------CccccChHHHHHHHHHHHHhc
Confidence 999999999999999999999877653 1122355689999999999999987 567999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 006548 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (641)
Q Consensus 265 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (641)
+|+||+||||+++||+.++..+.+.|.++. ++++||+++||+. +|+..++|||++|.++
T Consensus 148 ~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi-~EAv~LsdRivvl~~~ 207 (248)
T COG1116 148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSNR 207 (248)
T ss_pred CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHhhhCEEEEecCC
Confidence 999999999999999999999999999987 5589999988887 5888999999999984
No 15
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.7e-48 Score=380.35 Aligned_cols=219 Identities=25% Similarity=0.360 Sum_probs=193.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..+++++|++++ +.+.|++|||+.|++||+++||||||||||||||+|.|+++|++ |+|+++|+++..
T Consensus 7 ~~I~vr~v~~~f-----G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~---GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 7 PLIEVRGVTKSF-----GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDK---GEILIDGEDIPQLSEE 78 (263)
T ss_pred ceEEEeeeeeec-----CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCC---CeEEEcCcchhccCHH
Confidence 468999999998 46789999999999999999999999999999999999999986 999999987532
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchH-HhhhhcCCCCCCCCCHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LSGGerq 254 (641)
.++++|+++|+..||..+||.||+.|..+-+........++.+..-|+.+||... ++. +|.+|||||+|
T Consensus 79 ~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~------~PsELSGGM~K 152 (263)
T COG1127 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADL------YPSELSGGMRK 152 (263)
T ss_pred HHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhh------CchhhcchHHH
Confidence 1357999999999999999999999976543222222356677788999999876 655 56799999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
|++|||||+.+|+|||+||||+||||.++..+.+++++|++. |.|+++++|+. ++++.+|||+++|.+|+|+.+|+++
T Consensus 153 RvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt~~ 231 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEGTPE 231 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeCCHH
Confidence 999999999999999999999999999999999999999966 99999988887 5899999999999999999999999
Q ss_pred HHHH
Q 006548 334 ACLQ 337 (641)
Q Consensus 334 ~~~~ 337 (641)
++.+
T Consensus 232 el~~ 235 (263)
T COG1127 232 ELLA 235 (263)
T ss_pred HHHh
Confidence 8864
No 16
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=7.8e-48 Score=402.57 Aligned_cols=221 Identities=29% Similarity=0.415 Sum_probs=196.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----P 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~ 180 (641)
.+.++||++.|.. .+.+|+||||++++||++||+||||||||||+|+|+|+.+|++ |+|.++|.+... .
T Consensus 4 ~i~~~~l~k~~~~----~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~---G~i~i~G~~~~~~~~~~ 76 (293)
T COG1131 4 VIEVRNLTKKYGG----DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTS---GEILVLGYDVVKEPAKV 76 (293)
T ss_pred eeeecceEEEeCC----CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEEcCEeCccCHHHH
Confidence 5788999999841 4689999999999999999999999999999999999999975 999999987543 2
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
++++||++|++.+++.+||+|||.|.+.++.... ...+++++++++.+||.+..++++ ++||+||||||+||+
T Consensus 77 ~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~------~~lS~G~kqrl~ia~ 149 (293)
T COG1131 77 RRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK-EEAEERIEELLELFGLEDKANKKV------RTLSGGMKQRLSIAL 149 (293)
T ss_pred HhheEEEccCCCCCccccHHHHHHHHHHHhCCCh-hHHHHHHHHHHHHcCCchhhCcch------hhcCHHHHHHHHHHH
Confidence 3579999999999999999999999988875432 235678999999999998666555 499999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHh
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG-CTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (641)
||+.+|++|||||||+|||+.++..+.+.|++++++| +||++++|++ +++..+||+|++|++|+++++|+++++...+
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~ 228 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKEKF 228 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHHhh
Confidence 9999999999999999999999999999999999887 7999988887 5899999999999999999999998876655
Q ss_pred h
Q 006548 340 S 340 (641)
Q Consensus 340 ~ 340 (641)
.
T Consensus 229 ~ 229 (293)
T COG1131 229 G 229 (293)
T ss_pred c
Confidence 4
No 17
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1e-47 Score=380.73 Aligned_cols=209 Identities=29% Similarity=0.380 Sum_probs=181.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++||++.|..+.. ...+|+++|+++++||+++|+|||||||||||++|.|+..|++ |+|.++|.+...
T Consensus 2 i~~~~v~k~y~~~~~-~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~---G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 2 IELKNVSKIYGLGGE-KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTS---GEVLINGKDLTKLSEKEL 77 (226)
T ss_pred cEEeeeEEEeccCCc-ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---ceEEECCEEcCcCCHHHH
Confidence 568999998864432 2679999999999999999999999999999999999999975 999999976431
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
+++.+|||+|+..|+|.+||+||+.+++.+...... ..+++++++++.+||.+..++ .+|.+|||||||||
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~-~~~~~~~~l~~~lgl~~~~~~-----~~p~eLSGGqqQRV 151 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG-RRKRAAEELLEVLGLEDRLLK-----KKPSELSGGQQQRV 151 (226)
T ss_pred HHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChh-HHHHHHHHHHHhcCChhhhcc-----CCchhcCHHHHHHH
Confidence 235799999999999999999999988765432211 356778999999999877762 24569999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
+|||||+.+|++|++||||.+||+.++..|+++|++++++ |+|+|++||++ ++...|||++.|++|++
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 9999999999999999999999999999999999999865 99999999987 67889999999999994
No 18
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-48 Score=407.23 Aligned_cols=219 Identities=26% Similarity=0.395 Sum_probs=197.8
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---P 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~ 180 (641)
..++++||++.|. ...+|+|+|+.|++||+++|+||||||||||||+|||+..|++ |+|.++|+++.. .
T Consensus 4 ~~l~i~~v~k~yg-----~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~---G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 4 PALEIRNVSKSFG-----DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS---GEILLDGEDITDVPPE 75 (352)
T ss_pred ceEEEEeeeeecC-----CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCCCChh
Confidence 4689999999993 5689999999999999999999999999999999999999986 999999998642 3
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
++.+|+|+|+..|||+|||+||+.|+.+++......+.+++++++++.++|.++.++++ .+|||||||||+|||
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p------~qLSGGQqQRVALAR 149 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP------HQLSGGQQQRVALAR 149 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh------hhhChHHHHHHHHHH
Confidence 57899999999999999999999999874432222236679999999999999998855 599999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||+.+|++|+||||.|+||..-+.++...|+++.++ |.|.|++||+. +|+..++|||++|++|+|...|+|+++..
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~eiY~ 226 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEIYE 226 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHHhh
Confidence 999999999999999999999999999999999854 99999998887 58999999999999999999999998854
No 19
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-47 Score=400.16 Aligned_cols=218 Identities=28% Similarity=0.416 Sum_probs=196.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 181 (641)
.++++||++.|.+ ..+|+|+|++++.||+++|+||||||||||||+|||+.+|++ |+|.++|++... ..
T Consensus 3 ~i~l~~v~K~yg~-----~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~---G~I~i~g~~vt~l~P~~ 74 (338)
T COG3839 3 ELELKNVRKSFGS-----FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS---GEILIDGRDVTDLPPEK 74 (338)
T ss_pred EEEEeeeEEEcCC-----ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCCCChhH
Confidence 5899999999842 129999999999999999999999999999999999999986 999999998643 24
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.+++|+|+..|+|+|||+||+.|+.+.+.- ...+.+++|+++.+.++|++++|+++ .+|||||||||+||||
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~-~k~ei~~rV~eva~~L~l~~lL~r~P------~~LSGGQrQRVAlaRA 147 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGV-PKAEIDKRVKEVAKLLGLEHLLNRKP------LQLSGGQRQRVALARA 147 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhCCC-chHHHHHHHHHHHHHcCChhHHhcCc------ccCChhhHHHHHHHHH
Confidence 7899999999999999999999999876532 12346789999999999999999865 5999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (641)
|+++|++++||||+|+||...+..+...|+++.++ |.|+|.+||+. .|+..++|||++|++|++...|+|.++.++
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 99999999999999999999999999999999865 89999988887 589999999999999999999999998753
No 20
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-47 Score=383.97 Aligned_cols=218 Identities=27% Similarity=0.399 Sum_probs=187.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--C
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--Y 181 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--~ 181 (641)
..++++|+++.|.+ . ++|+|||+.+++|++++|+||||||||||+|+|+|+++|.. |+|.++|++.... .
T Consensus 3 ~~i~v~nl~v~y~~----~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~---G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 3 PMIEVENLTVSYGN----R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS---GEIKIFGKPVRKRRKR 74 (254)
T ss_pred cEEEEeeeEEEECC----E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCc---ceEEEccccccccccC
Confidence 36899999999942 2 59999999999999999999999999999999999999975 9999999875433 3
Q ss_pred ceEEEEcCCCcc--CCCCCHHHHHHHHHHhcCC---CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 182 GSYGFVERETTL--IGSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 182 ~~~~yv~Q~~~l--~~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
.++|||||...+ -..+||+|.+..+...+.. ....++++.++++|+.+|+.+++++.++ +|||||+|||
T Consensus 75 ~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~------~LSGGQ~QRV 148 (254)
T COG1121 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG------ELSGGQKQRV 148 (254)
T ss_pred CeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc------ccCcHHHHHH
Confidence 679999995432 2347999999876332211 1112346789999999999999999887 9999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
.|||||+.+|++|+|||||+|+|+.++..++++|++++++|+||++++|+. ..+.++||+|++|+ +++++.|+++++.
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL-~~v~~~~D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDL-GLVMAYFDRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-HHhHhhCCEEEEEc-CeeEeccChhhcc
Confidence 999999999999999999999999999999999999998899999977776 58999999999995 6788999998876
Q ss_pred H
Q 006548 337 Q 337 (641)
Q Consensus 337 ~ 337 (641)
+
T Consensus 227 ~ 227 (254)
T COG1121 227 T 227 (254)
T ss_pred C
Confidence 4
No 21
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-47 Score=387.41 Aligned_cols=219 Identities=27% Similarity=0.394 Sum_probs=195.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCCC--
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA---KSEM-- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~---~~~~-- 179 (641)
.+.++|+++.+. ...+++|||+.|+.||++|++|||||||||||++|+|+..|+. |.|.+||+ +...
T Consensus 2 ~i~i~~~~~~~~-----~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~---G~I~~~~~~l~D~~~~~ 73 (345)
T COG1118 2 SIRINNVKKRFG-----AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDA---GRIRLNGRVLFDVSNLA 73 (345)
T ss_pred ceeehhhhhhcc-----cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCC---ceEEECCEeccchhccc
Confidence 477888888773 4578999999999999999999999999999999999999986 99999998 4322
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
..+++|||+|+..+|++|||.||+.|+...+.. ....+.+.+++++|+.+.|+++.++ +|.+|||||||||+
T Consensus 74 ~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~r------yP~QLSGGQrQRVA 147 (345)
T COG1118 74 VRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADR------YPAQLSGGQRQRVA 147 (345)
T ss_pred hhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhc------CchhcChHHHHHHH
Confidence 236899999999999999999999999876621 1122467889999999999999988 56699999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
+||||+.+|++|+||||+++||..-+.++.+.|+++.++ |.|+++++|++ +++.++||||++|++|+|...|+++++.
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 999999999999999999999999999999999999866 99999988887 6899999999999999999999999986
Q ss_pred HH
Q 006548 337 QH 338 (641)
Q Consensus 337 ~~ 338 (641)
+.
T Consensus 227 ~~ 228 (345)
T COG1118 227 DH 228 (345)
T ss_pred cC
Confidence 54
No 22
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-47 Score=373.24 Aligned_cols=220 Identities=29% Similarity=0.392 Sum_probs=192.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..++++||++.|+ .++++|+|||+.+++||++||+||||||||||||+|+|+.+++. |+|.+||.++..
T Consensus 2 ~~i~~~nl~k~yp----~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~---G~i~~~g~~i~~~~~k 74 (258)
T COG3638 2 MMIEVKNLSKTYP----GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTS---GEILFNGVQITKLKGK 74 (258)
T ss_pred ceEEEeeeeeecC----CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCc---ceEEecccchhccchH
Confidence 3689999999996 35689999999999999999999999999999999999999875 999999976421
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCC------cc-chHHHHHHHHHHHcCCchHHhhhhcCCCCCCCC
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPG------FF-CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~------~~-~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~L 248 (641)
.++++||++|+..|.+.+||.+|+..+..-+.+. .. .+.+..+-++|+.+|+.+.+.++.+ .|
T Consensus 75 ~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~------~L 148 (258)
T COG3638 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS------TL 148 (258)
T ss_pred HHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc------cC
Confidence 1357999999999999999999998764322211 11 2345667889999999999988776 99
Q ss_pred CHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 006548 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (641)
Q Consensus 249 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (641)
||||+|||+|||||+++|+||+.|||+++|||.+++.+|+.|++++ ++|.|+|++.|+. +.+.++||||+-|++|+++
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Riigl~~G~iv 227 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADRIIGLKAGRIV 227 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhheEecCCcEE
Confidence 9999999999999999999999999999999999999999999998 4599999999987 5889999999999999999
Q ss_pred EEeChhHHHH
Q 006548 328 FFGETLACLQ 337 (641)
Q Consensus 328 ~~G~~~~~~~ 337 (641)
|+|+++++-+
T Consensus 228 fDg~~~el~~ 237 (258)
T COG3638 228 FDGPASELTD 237 (258)
T ss_pred EeCChhhhhH
Confidence 9999988643
No 23
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-46 Score=370.38 Aligned_cols=220 Identities=25% Similarity=0.345 Sum_probs=190.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
+.++++||++.|+.++ ....+|+|||+++++||+++|+|+||||||||.++|+|+.+|+. |+|.++|++...
T Consensus 2 ~~l~v~nl~~~y~~~~-~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~---G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 2 TLLSVRNLSIVYGGGK-FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS---GSILLDGKPLAPKKRA 77 (252)
T ss_pred ceEEEeceEEEecCCc-chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCC---ceEEECCcccCccccc
Confidence 3689999999996432 22369999999999999999999999999999999999999975 999999976432
Q ss_pred --CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHHHH
Q 006548 180 --PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 180 --~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerq 254 (641)
.++.+-+|+||+ .+.|..||++.|..+.... ...+.++++.++++.+||. +++++ +|++|||||||
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~---~~~~~~~~i~~~L~~VgL~~~~l~R------~P~eLSGGQ~Q 148 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLSKSQQRIAELLDQVGLPPSFLDR------RPHELSGGQRQ 148 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccC---CccHHHHHHHHHHHHcCCCHHHHhc------CchhcChhHHH
Confidence 246789999986 6899999999998876542 1224455699999999995 56666 56699999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
|++|||||+.+|++||||||||+||+..+.+|+++|.+++++ |.|.|+++|+. ..+..+||||+||++|++++.+++.
T Consensus 149 RiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~Vm~~G~ivE~~~~~ 227 (252)
T COG1124 149 RIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL-ALVEHMCDRIAVMDNGQIVEIGPTE 227 (252)
T ss_pred HHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH-HHHHHHhhheeeeeCCeEEEeechh
Confidence 999999999999999999999999999999999999999865 88999977765 6899999999999999999999998
Q ss_pred HHHH
Q 006548 334 ACLQ 337 (641)
Q Consensus 334 ~~~~ 337 (641)
++.+
T Consensus 228 ~l~~ 231 (252)
T COG1124 228 ELLS 231 (252)
T ss_pred hhhc
Confidence 8765
No 24
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.8e-47 Score=359.24 Aligned_cols=218 Identities=28% Similarity=0.363 Sum_probs=195.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 181 (641)
+++.+++++|+. ..++++||||.++.||+++|+|||||||||+||+|++++.|++ |+|+++|.+... .+
T Consensus 2 l~v~~l~K~y~~----~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~---G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 2 LEVTDLTKSYGS----KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDS---GKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred eeeeehhhhccC----HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCC---ceEEEeecccccChHHHh
Confidence 678899999853 3459999999999999999999999999999999999999986 999999976422 24
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+++|.++.+..++..||++|||.|.+.+.--. ..+.+++++++.+.++|.+++|+.++ ++|.|+||||+||||
T Consensus 75 r~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~-~~~~kari~~l~k~l~l~~~~~rRv~------~~S~G~kqkV~iARA 147 (245)
T COG4555 75 RKIGVLFGERGLYARLTARENLKYFARLNGLS-RKEIKARIAELSKRLQLLEYLDRRVG------EFSTGMKQKVAIARA 147 (245)
T ss_pred hhcceecCCcChhhhhhHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHhChHHHHHHHHh------hhchhhHHHHHHHHH
Confidence 67999998899999999999999888775211 12357789999999999999999987 999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (641)
|+++|++++|||||||||..+...+.+.+++++++|++||+++|.. +++..+||+|++|++|++|+.|+.+++...
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999987775 689999999999999999999999887653
No 25
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-46 Score=360.69 Aligned_cols=222 Identities=25% Similarity=0.360 Sum_probs=194.0
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCCC-
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEMP- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~~- 180 (641)
..++++||++.|. .+++|+|||+.|.+++++|+|||||||||||||++..+.. +..+.+|+|.++|+++...
T Consensus 6 ~~~~~~~l~~yYg-----~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 6 PAIEVRDLNLYYG-----DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred ceeEecceeEEEC-----chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC
Confidence 4689999999994 5789999999999999999999999999999999999854 3445789999999986432
Q ss_pred ------CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHHH
Q 006548 181 ------YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGER 253 (641)
Q Consensus 181 ------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGer 253 (641)
++++|+|+|.+.-|| +|++||+.|+.+++.-.. .+.++.|+..|+...|. +..|++ +....+|||||+
T Consensus 81 ~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL---~~sa~~LSGGQQ 155 (253)
T COG1117 81 VDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRL---HKSALGLSGGQQ 155 (253)
T ss_pred CCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHh---hCCccCCChhHH
Confidence 467999999999998 899999999988764333 34677899999999995 566665 446779999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
||++|||||+.+|+||+||||||+|||.+..+|-+++.+|+ +.-|||++||.+ .++.+..|+..++..|++|++|+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~g~T~ 233 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNM-QQAARVSDYTAFFYLGELVEFGPTD 233 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCH-HHHHHHhHhhhhhcccEEEEEcCHH
Confidence 99999999999999999999999999999999999999998 467888888876 5899999999999999999999998
Q ss_pred HHHH
Q 006548 334 ACLQ 337 (641)
Q Consensus 334 ~~~~ 337 (641)
+++.
T Consensus 234 ~iF~ 237 (253)
T COG1117 234 KIFT 237 (253)
T ss_pred hhhc
Confidence 8754
No 26
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=4e-45 Score=389.26 Aligned_cols=219 Identities=22% Similarity=0.289 Sum_probs=190.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++||++.|..++ ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++...
T Consensus 2 I~~~~lsk~y~~~~-~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~---G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 2 IKLSNITKVFHQGT-KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTS---GSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred EEEEEEEEEECCCC-cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEECCcCCHHHH
Confidence 78999999995321 13479999999999999999999999999999999999999975 999999987532
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
.++.++|++|+..+++.+||+||+.++..... ....+.++++.++++.+||.+..++.+ .+|||||||||+
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~v~e~l~~vgL~~~~~~~~------~~LSgGqkQRV~ 150 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN-TPKDEIKRKVTELLALVGLGDKHDSYP------SNLSGGQKQRVA 150 (343)
T ss_pred HHHhcCEEEEECCccccccCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchhhhCCh------hhCCHHHHHHHH
Confidence 13479999999999999999999998765321 111234567899999999998887754 599999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||||+.+|++|||||||++||+.++..++++|++++++ |.|||+++|+. +.+.++||+|++|++|++++.|++++++
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999865 99999988886 5788999999999999999999998875
No 27
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-45 Score=390.93 Aligned_cols=218 Identities=24% Similarity=0.379 Sum_probs=192.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 181 (641)
.++++||++.|. +.+.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++ |+|.++|++... ..
T Consensus 3 ~l~i~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~---G~I~~~g~~i~~~~~~~ 75 (356)
T PRK11650 3 GLKLQAVRKSYD----GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITS---GEIWIGGRVVNELEPAD 75 (356)
T ss_pred EEEEEeEEEEeC----CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHH
Confidence 489999999983 13569999999999999999999999999999999999999875 999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++||+|+..+||++||+||+.|+...+. ....+.+++++++++.+||.+..++.+ ++|||||||||+||||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LSgGq~QRvalARA 148 (356)
T PRK11650 76 RDIAMVFQNYALYPHMSVRENMAYGLKIRG-MPKAEIEERVAEAARILELEPLLDRKP------RELSGGQRQRVAMGRA 148 (356)
T ss_pred CCEEEEeCCccccCCCCHHHHHHhHHhhcC-CCHHHHHHHHHHHHHHcCChhHhhCCh------hhCCHHHHHHHHHHHH
Confidence 579999999999999999999999865331 111224567899999999999888855 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|+++|++ .++..+||++++|++|+++..|+++++.+
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999865 89999998887 57999999999999999999999988754
No 28
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=4.4e-45 Score=384.78 Aligned_cols=217 Identities=27% Similarity=0.347 Sum_probs=191.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----P 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~ 180 (641)
.++++||++.|. .+.+|+|||+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... .
T Consensus 7 ~i~i~~l~k~~~-----~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~---G~v~i~G~~~~~~~~~~ 78 (306)
T PRK13537 7 PIDFRNVEKRYG-----DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDA---GSISLCGEPVPSRARHA 78 (306)
T ss_pred eEEEEeEEEEEC-----CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEecccchHHH
Confidence 689999999984 3579999999999999999999999999999999999999875 999999987532 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
++.+||++|++.+++.+||+||+.+.+..+. ....+..++++++++.++|.+..++.++ +|||||||||+||+
T Consensus 79 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~qrl~la~ 151 (306)
T PRK13537 79 RQRVGVVPQFDNLDPDFTVRENLLVFGRYFG-LSAAAARALVPPLLEFAKLENKADAKVG------ELSGGMKRRLTLAR 151 (306)
T ss_pred HhcEEEEeccCcCCCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchHhcCchh------hCCHHHHHHHHHHH
Confidence 3579999999999999999999987665431 1111234568899999999988888664 99999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+. +++.++||+|++|++|++++.|+++++.+
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999987899999988887 58999999999999999999999988764
No 29
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.8e-45 Score=370.51 Aligned_cols=216 Identities=26% Similarity=0.366 Sum_probs=185.1
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~~ 72 (235)
T cd03261 1 IELRGLTKSFG-----GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDS---GEVLIDGEDISGLSEAEL 72 (235)
T ss_pred CeEEEEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccChhhH
Confidence 46899999884 3469999999999999999999999999999999999999875 999999987432
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
.++.++|++|++.+++.+||+||+.+...........+..++++++++.+||.+..++.+ .+|||||||||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrv~ 146 (235)
T cd03261 73 YRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP------AELSGGMKKRVA 146 (235)
T ss_pred HHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh------hhCCHHHHHHHH
Confidence 124699999999999999999999886432211111123456889999999988777755 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 999999999999999999999999999999999999864 89999988887 4788999999999999999999887653
No 30
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.2e-45 Score=399.98 Aligned_cols=268 Identities=24% Similarity=0.307 Sum_probs=216.2
Q ss_pred EEeCccccccccCCCCcccccccCCCCCCCCCCcch--hhhhccCCceEEEEeEEEEEeccc------ccccceeeceee
Q 006548 60 VEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGA--AVARKIAGASVVWKDLTVTIKGKR------RYSDKVVKSSNG 131 (641)
Q Consensus 60 v~e~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~ls~~~~~~~------~~~~~iL~~vs~ 131 (641)
++|.|++.++...|.|||++.+.++.+......... ..........++++||++.|..++ .+..++++||||
T Consensus 233 iVE~G~~~~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf 312 (539)
T COG1123 233 IVETGPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSF 312 (539)
T ss_pred EEEecCHHHHHhccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeeccccccccccccceeeeeeeee
Confidence 688999999999999999999866432211110000 000000235689999999997432 234679999999
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------CCc--eEEEEcCCCccCCCCCHHHH
Q 006548 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-------PYG--SYGFVERETTLIGSLTVREY 202 (641)
Q Consensus 132 ~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-------~~~--~~~yv~Q~~~l~~~lTV~E~ 202 (641)
.+++||++||+|+||||||||.|+|+|+.+|++ |+|.++|.+... .++ ++.|+.++..|.|.+||+++
T Consensus 313 ~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~---G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~ 389 (539)
T COG1123 313 DLREGETLGLVGESGSGKSTLARILAGLLPPSS---GSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDI 389 (539)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHH
Confidence 999999999999999999999999999999975 999999976211 112 35555556789999999999
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHH
Q 006548 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281 (641)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~ 281 (641)
+..+..........+.++++.++++.+||.. .+++ +|++||||||||++|||||+.+|++|++|||||.||+.
T Consensus 390 i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~r------yP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvs 463 (539)
T COG1123 390 LAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDR------YPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVS 463 (539)
T ss_pred HHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhc------CchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHH
Confidence 9988765544333345678999999999975 5555 67799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 282 SALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 282 ~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
.+..++++|++++++ |.|.|+++|+. ..+..+||||++|++|++|+.|+.+++++
T Consensus 464 vqa~VlnLl~~lq~e~g~t~lfISHDl-~vV~~i~drv~vm~~G~iVE~G~~~~v~~ 519 (539)
T COG1123 464 VQAQVLNLLKDLQEELGLTYLFISHDL-AVVRYIADRVAVMYDGRIVEEGPTEKVFE 519 (539)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHhhCceEEEEECCeEEEeCCHHHHhc
Confidence 999999999999965 99999977765 68999999999999999999998887754
No 31
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=7.5e-45 Score=389.33 Aligned_cols=217 Identities=24% Similarity=0.349 Sum_probs=192.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 181 (641)
.++++||++.|. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.++|++... ..
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~---G~I~i~g~~~~~~~~~~ 75 (353)
T TIGR03265 4 YLSIDNIRKRFG-----AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTA---GTIYQGGRDITRLPPQK 75 (353)
T ss_pred EEEEEEEEEEeC-----CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHH
Confidence 589999999984 3569999999999999999999999999999999999999875 999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++||+|+..+||++||+||+.|+...+.. ...+.+++++++++.++|.++.++.+ ++|||||||||+||||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~-~~~~~~~~~~~~l~~l~L~~~~~~~~------~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGM-GRAEVAERVAELLDLVGLPGSERKYP------GQLSGGQQQRVALARA 148 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCCchhhCCh------hhCCHHHHHHHHHHHH
Confidence 5799999999999999999999998654311 11234667999999999999988754 5999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|+.+|++|||||||++||..++..+.+.|+++.++ |.|+|+++|++ .++..+||+|++|++|+++..|+++++.+
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999865 89999988887 58899999999999999999999988764
No 32
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-44 Score=387.46 Aligned_cols=217 Identities=25% Similarity=0.437 Sum_probs=192.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 181 (641)
.++++||++.|. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.++|+++.. ..
T Consensus 6 ~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~~~g~~i~~~~~~~ 77 (351)
T PRK11432 6 FVVLKNITKRFG-----SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE---GQIFIDGEDVTHRSIQQ 77 (351)
T ss_pred EEEEEeEEEEEC-----CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHH
Confidence 689999999984 3469999999999999999999999999999999999999975 999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++||+|+..+||++||+||+.|+...+.. ...+.+++++++++.+||.++.++.+ +.|||||||||+||||
T Consensus 78 r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~-~~~~~~~~v~~~l~~~gl~~~~~r~~------~~LSgGq~QRVaLARa 150 (351)
T PRK11432 78 RDICMVFQSYALFPHMSLGENVGYGLKMLGV-PKEERKQRVKEALELVDLAGFEDRYV------DQISGGQQQRVALARA 150 (351)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHHHhHcCC-CHHHHHHHHHHHHHHcCCchhhcCCh------hhCCHHHHHHHHHHHH
Confidence 6799999999999999999999998654321 11234668999999999998887754 5999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|+++|++ +++..+||+|++|++|+++..|+++++..
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~~ 226 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELYR 226 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999865 89999988887 58899999999999999999999988753
No 33
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.2e-45 Score=347.26 Aligned_cols=211 Identities=24% Similarity=0.321 Sum_probs=187.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------- 178 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~------- 178 (641)
+.|+||++.|++ ++.+|+|||+++++||++-|+||||||||||||+|.+...|+. |+|.++|.+..
T Consensus 2 I~f~~V~k~Y~~----g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~---G~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 2 IRFENVSKAYPG----GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTR---GKILVNGHDLSRLKGREI 74 (223)
T ss_pred eeehhhhhhcCC----CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCC---ceEEECCeeccccccccc
Confidence 689999999964 3679999999999999999999999999999999999999976 99999998742
Q ss_pred -CCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 179 -MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 179 -~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
..+++||+|+||..|.+..||+||+.|+....-. ...+.++++.++|+.+||.+.++.. |.+|||||||||+
T Consensus 75 P~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~-~~~~i~~rV~~~L~~VgL~~k~~~l------P~~LSGGEQQRva 147 (223)
T COG2884 75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGK-PPREIRRRVSEVLDLVGLKHKARAL------PSQLSGGEQQRVA 147 (223)
T ss_pred chhhheeeeEeeeccccccchHhhhhhhhhhccCC-CHHHHHHHHHHHHHHhccchhhhcC------ccccCchHHHHHH
Confidence 1246899999999999999999999998765421 2234678899999999999888775 4599999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
||||++.+|++||.||||.+|||..+.++++++.++.+.|+||++.+|+. ..+..+-.|++.|++|+++.+..
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~-~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL-ELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH-HHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999999999999999999999988875 57888888999999999987653
No 34
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2.5e-45 Score=344.22 Aligned_cols=214 Identities=28% Similarity=0.403 Sum_probs=184.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--C-Cc
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--P-YG 182 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~--~-~~ 182 (641)
+.+++|.+.|.. .==..++.+.+||++||+||||||||||||+|+|...|.+ |+|++||++... + .+
T Consensus 2 l~L~~V~~~y~~-------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~---G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 2 LALDDVRFSYGH-------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPAS---GEILINGVDHTASPPAER 71 (231)
T ss_pred ccccceEEeeCc-------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCC---ceEEEcCeecCcCCcccC
Confidence 456677777742 2234678889999999999999999999999999999975 999999987532 2 35
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
-++.++|+..+|.++||.+|+-++..-.+.-. ...+++++.++..+||..+.+++++ +|||||||||++||+|
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~-a~~r~~v~~aa~~vGl~~~~~RLP~------~LSGGqRQRvALARcl 144 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGLKLN-AEQREKVEAAAAQVGLAGFLKRLPG------ELSGGQRQRVALARCL 144 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCcccccC-HHHHHHHHHHHHHhChhhHhhhCcc------ccCchHHHHHHHHHHH
Confidence 69999999999999999999977643222111 2366789999999999999999776 9999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
+++-+||+||||+|+|||.-+.++..++.+++ +++.|+++++|||. ++.+++|+++++++|+|.+.|+.++.+.
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 99999999999999999999999999999998 45899999999995 7899999999999999999999887653
No 35
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.3e-44 Score=386.25 Aligned_cols=219 Identities=24% Similarity=0.324 Sum_probs=192.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 181 (641)
.++++||++.|. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++ .+|+|.++|++... ..
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~-~~G~i~~~g~~~~~~~~~~ 78 (362)
T TIGR03258 5 GIRIDHLRVAYG-----ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG-LTGRIAIADRDLTHAPPHK 78 (362)
T ss_pred EEEEEEEEEEEC-----CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CCEEEEECCEECCCCCHHH
Confidence 589999999994 3469999999999999999999999999999999999998862 23999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++||+|+..++|++||+||+.|+...+. ....+.+++++++++.+||.+..++.+ ++|||||||||+||||
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~-~~~~~~~~~v~~~l~~~gL~~~~~~~~------~~LSgGq~QRvaLARA 151 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQK-MPKADIAERVADALKLVGLGDAAAHLP------AQLSGGMQQRIAIARA 151 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhcCCCchhhCCh------hhCCHHHHHHHHHHHH
Confidence 579999999999999999999999865432 111234567899999999999888855 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST--GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~--g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|+.+|++|||||||+|||+..+..+.+.|++++++ |.|+|+++|++ +++..+||+|++|++|+++..|+++++.+
T Consensus 152 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 152 IAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999876 78999988887 57899999999999999999999998864
No 36
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=2.7e-44 Score=385.00 Aligned_cols=218 Identities=24% Similarity=0.357 Sum_probs=191.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 181 (641)
.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++ |+|.++|++... ..
T Consensus 2 ~L~i~~l~~~~~-----~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~i~g~~i~~~~~~~ 73 (353)
T PRK10851 2 SIEIANIKKSFG-----RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTS---GHIRFHGTDVSRLHARD 73 (353)
T ss_pred EEEEEEEEEEeC-----CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHHH
Confidence 478999999984 3469999999999999999999999999999999999999875 999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcC---CCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQL---PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
+.++||+|+..++|.+||+||+.|+..... .....+.+++++++++.++|.+..++.+ .+|||||||||+|
T Consensus 74 r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~------~~LSgGq~QRval 147 (353)
T PRK10851 74 RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP------AQLSGGQKQRVAL 147 (353)
T ss_pred CCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh------hhCCHHHHHHHHH
Confidence 579999999999999999999998765321 0111124567899999999998888754 5999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|+++|++ .++..+||+|++|++|++++.|+++++.+
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999866 89999988887 58899999999999999999999988754
No 37
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=4e-44 Score=381.92 Aligned_cols=219 Identities=26% Similarity=0.332 Sum_probs=192.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..++++||++.|. .+.+|+|+|+++++||++||+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 40 ~~i~i~nl~k~y~-----~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~---G~i~i~G~~~~~~~~~ 111 (340)
T PRK13536 40 VAIDLAGVSKSYG-----DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDA---GKITVLGVPVPARARL 111 (340)
T ss_pred eeEEEEEEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCc---eEEEECCEECCcchHH
Confidence 4699999999994 3569999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
.++.+||++|+..+++.+||.||+.+...... ....+..++++++++.++|.+..++.++ +|||||||||+||
T Consensus 112 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~ll~~~~L~~~~~~~~~------~LS~G~kqrv~lA 184 (340)
T PRK13536 112 ARARIGVVPQFDNLDLEFTVRENLLVFGRYFG-MSTREIEAVIPSLLEFARLESKADARVS------DLSGGMKRRLTLA 184 (340)
T ss_pred HhccEEEEeCCccCCCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchhhCCChh------hCCHHHHHHHHHH
Confidence 13569999999999999999999987554331 1111234567889999999988888665 9999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHH
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (641)
+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+. +++.++||+|++|++|++++.|+++++.+.
T Consensus 185 ~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 185 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999999999988899999988887 589999999999999999999999987653
No 38
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=4.4e-44 Score=385.58 Aligned_cols=218 Identities=25% Similarity=0.357 Sum_probs=192.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---P 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~ 180 (641)
..++++|+++.|. .+.+|+|+|+.+++||+++|+|||||||||||++|+|+.+|++ |+|.++|++... .
T Consensus 13 ~~L~l~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~---G~I~~~g~~i~~~~~~ 84 (375)
T PRK09452 13 PLVELRGISKSFD-----GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDS---GRIMLDGQDITHVPAE 84 (375)
T ss_pred ceEEEEEEEEEEC-----CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHH
Confidence 3589999999984 3469999999999999999999999999999999999999875 999999987532 2
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
.+.++||+|+..+||++||+||+.|+...+.. ...+.+++++++++.+||.+..++.+ .+|||||||||+|||
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~p------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKT-PAAEITPRVMEALRMVQLEEFAQRKP------HQLSGGQQQRVAIAR 157 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHcCCchhhhCCh------hhCCHHHHHHHHHHH
Confidence 35799999999999999999999998653311 11124567899999999999888855 499999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||+.+|++|||||||+|||..++..+.+.|+++.++ |.|+|+++|++ .++..++|+|++|++|+++..|+++++.+
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIYE 234 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999865 89999988887 58899999999999999999999988754
No 39
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-43 Score=361.82 Aligned_cols=217 Identities=23% Similarity=0.343 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 181 (641)
.++++||++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..
T Consensus 2 ~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 73 (239)
T cd03296 2 SIEVRNVSKRFG-----DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDS---GTILFGGEDATDVPVQE 73 (239)
T ss_pred EEEEEeEEEEEC-----CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCcCCccc
Confidence 478999999984 2469999999999999999999999999999999999998875 999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-C--ccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLP-G--FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~--~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
+.++|++|++.+++.+||+||+.+....... . ...+..++++++++.+||.+..++.+ .+|||||||||+|
T Consensus 74 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~l 147 (239)
T cd03296 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP------AQLSGGQRQRVAL 147 (239)
T ss_pred cceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh------hhCCHHHHHHHHH
Confidence 5699999999999999999999876543211 0 11123456788999999988877755 4999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 99999999999999999999999999999999999865 89999998887 4788999999999999999999887653
No 40
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=4.9e-44 Score=363.14 Aligned_cols=216 Identities=24% Similarity=0.328 Sum_probs=185.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----- 180 (641)
++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|.+....
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 72 (236)
T cd03219 1 LEVRGLTKRFG-----GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTS---GSVLFDGEDITGLPPHEI 72 (236)
T ss_pred CeeeeeEEEEC-----CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---ceEEECCEECCCCCHHHH
Confidence 36789999884 2469999999999999999999999999999999999998875 9999999875321
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCC---------ccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCH
Q 006548 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPG---------FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (641)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~---------~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSG 250 (641)
...++|++|++.+++.+||+||+.+........ ...+..++++++++.+|+.+..++.+ ++|||
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSg 146 (236)
T cd03219 73 ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA------GELSY 146 (236)
T ss_pred HhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh------hhCCH
Confidence 235999999999999999999998865432111 01123456889999999988777654 49999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 251 GerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|+++..|
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~ 225 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDM-DVVMSLADRVTVLDQGRVIAEG 225 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEeec
Confidence 999999999999999999999999999999999999999999987889999988887 4788999999999999999999
Q ss_pred ChhHHH
Q 006548 331 ETLACL 336 (641)
Q Consensus 331 ~~~~~~ 336 (641)
+++++.
T Consensus 226 ~~~~~~ 231 (236)
T cd03219 226 TPDEVR 231 (236)
T ss_pred CHHHhc
Confidence 887653
No 41
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=8.5e-44 Score=374.85 Aligned_cols=218 Identities=25% Similarity=0.316 Sum_probs=189.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 180 (641)
..++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 3 ~~i~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~ 74 (303)
T TIGR01288 3 VAIDLVGVSKSYG-----DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR---GKITVLGEPVPSRARL 74 (303)
T ss_pred cEEEEEeEEEEeC-----CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECcccHHH
Confidence 3689999999984 3469999999999999999999999999999999999998875 9999999875321
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
++.++|++|++.+++.+||+||+.+...... ....+..++++++++.++|.+..++.++ +|||||||||+||
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~ll~~~~l~~~~~~~~~------~LSgG~~qrv~la 147 (303)
T TIGR01288 75 ARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG-MSTREIEAVIPSLLEFARLESKADVRVA------LLSGGMKRRLTLA 147 (303)
T ss_pred HhhcEEEEeccccCCcCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCChhHhcCchh------hCCHHHHHHHHHH
Confidence 3569999999999999999999986543321 1111234567889999999988877654 9999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|++++.|+++++.+
T Consensus 148 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 148 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999988899999988887 48889999999999999999999988754
No 42
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-44 Score=358.47 Aligned_cols=213 Identities=27% Similarity=0.366 Sum_probs=184.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 181 (641)
++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..
T Consensus 1 i~~~~~~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (220)
T cd03265 1 IEVENLVKKYG-----DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTS---GRATVAGHDVVREPREVR 72 (220)
T ss_pred CEEEEEEEEEC-----CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEecCcChHHHh
Confidence 46899999884 3469999999999999999999999999999999999998875 999999976432 12
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++|++.+++.+||+||+.+....+.. ...+.+++++++++.++|.+..++.+ ..|||||||||+||+|
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qr~~la~a 145 (220)
T cd03265 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGV-PGAERRERIDELLDFVGLLEAADRLV------KTYSGGMRRRLEIARS 145 (220)
T ss_pred hcEEEecCCccccccCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHhhCCh------hhCCHHHHHHHHHHHH
Confidence 4699999999999999999999886543211 11123457889999999988877755 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|+++..|++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99999999999999999999999999999999876 89999988887 47889999999999999999988765
No 43
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-43 Score=357.27 Aligned_cols=216 Identities=29% Similarity=0.366 Sum_probs=183.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 185 (641)
++++|+++.|.+.+ ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++.....+.++
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~i~ 76 (220)
T cd03293 1 LEVRNVSKTYGGGG-GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTS---GEVLVDGEPVTGPGPDRG 76 (220)
T ss_pred CeEEEEEEEcCCCC-cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECccccCcEE
Confidence 36899999885211 11579999999999999999999999999999999999998875 999999987654446799
Q ss_pred EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhC
Q 006548 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (641)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (641)
|++|++.+++.+||+||+.+....+.. ......++++++++.++|.+..++.+ ..||||||||++|||||+.+
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 77 YVFQQDALLPWLTVLDNVALGLELQGV-PKAEARERAEELLELVGLSGFENAYP------HQLSGGMRQRVALARALAVD 149 (220)
T ss_pred EEecccccccCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhhhhCCc------ccCCHHHHHHHHHHHHHHcC
Confidence 999999999989999999886543211 11123457889999999988877755 49999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEe--CCeEEEEeChh
Q 006548 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS--NGNTLFFGETL 333 (641)
Q Consensus 266 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~--~G~iv~~G~~~ 333 (641)
|++|||||||+|||+.++..+.+.|+++.+ .|+|||+++|++ .++.++||++++|+ +|+++..++++
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 999999999999999999999999999975 489999988887 47889999999999 79999888753
No 44
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.7e-44 Score=356.68 Aligned_cols=209 Identities=28% Similarity=0.416 Sum_probs=179.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 182 (641)
++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++... ..+
T Consensus 1 l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03259 1 LELKGLSKTYG-----SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDS---GEILIDGRDVTGVPPERR 72 (213)
T ss_pred CeeeeeEEEeC-----CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEcCcCchhhc
Confidence 36889999884 2469999999999999999999999999999999999998875 999999987532 234
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
.++|++|++.+++.+||+||+.+...... .......++++++++.++|.+..++.+ ..|||||||||+|||||
T Consensus 73 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrl~la~al 145 (213)
T cd03259 73 NIGMVFQDYALFPHLTVAENIAFGLKLRG-VPKAEIRARVRELLELVGLEGLLNRYP------HELSGGQQQRVALARAL 145 (213)
T ss_pred cEEEEcCchhhccCCcHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHcCChhhhhcCh------hhCCHHHHHHHHHHHHH
Confidence 69999999999999999999987643321 111123456889999999998887755 49999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999864 89999988887 4788999999999999998765
No 45
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-44 Score=383.46 Aligned_cols=217 Identities=28% Similarity=0.412 Sum_probs=190.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 181 (641)
.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++... ..
T Consensus 3 ~l~i~~l~~~~~-----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~---G~I~~~g~~i~~~~~~~ 74 (369)
T PRK11000 3 SVTLRNVTKAYG-----DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITS---GDLFIGEKRMNDVPPAE 74 (369)
T ss_pred EEEEEEEEEEeC-----CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHhH
Confidence 488999999984 3469999999999999999999999999999999999999875 999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++|+..+++.+||+||+.|+...+.. ...+.+++++++++.+||.+..++.+ .+|||||||||+||||
T Consensus 75 ~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~lgL~~~~~~~~------~~LSgGq~QRvaLAra 147 (369)
T PRK11000 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGA-KKEEINQRVNQVAEVLQLAHLLDRKP------KALSGGQRQRVAIGRT 147 (369)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHhHHhhcCC-CHHHHHHHHHHHHHHcCChhhhcCCh------hhCCHHHHHHHHHHHH
Confidence 5699999999999999999999987653311 11224567899999999998887755 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|+++|++ +++..+||++++|++|+++..|+++++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999865 89999988887 57889999999999999999999988754
No 46
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=6.7e-44 Score=357.46 Aligned_cols=207 Identities=24% Similarity=0.301 Sum_probs=178.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++|+++.|+++ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++...
T Consensus 2 l~~~~l~~~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 2 IRFEQVSKAYPGG---HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTR---GKIRFNGQDLTRLRGREI 75 (216)
T ss_pred eEEEEEEEEecCC---CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEehhhcChhHH
Confidence 6899999998421 2469999999999999999999999999999999999998875 999999987521
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
.++.++|++|++.+++.+||+||+.+....... ......++++++++.+||.+..++.+ .+|||||||||+
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrv~ 148 (216)
T TIGR00960 76 PFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGV-PPRDANERVSAALEKVGLEGKAHALP------MQLSGGEQQRVA 148 (216)
T ss_pred HHHHHhceEEecCccccccccHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHHHHHHH
Confidence 124699999999999999999999887543211 11124567889999999988887755 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ +++.++||++++|++|++
T Consensus 149 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 149 IARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999987789999988887 478889999999999974
No 47
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-43 Score=382.08 Aligned_cols=217 Identities=22% Similarity=0.347 Sum_probs=191.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 181 (641)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+. |+|.++|++... .+
T Consensus 19 ~l~l~~v~~~~~-----~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~i~g~~i~~~~~~~ 90 (377)
T PRK11607 19 LLEIRNLTKSFD-----GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTA---GQIMLDGVDLSHVPPYQ 90 (377)
T ss_pred eEEEEeEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHHH
Confidence 599999999984 3469999999999999999999999999999999999999875 999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.+|||+|+..+||++||.||+.|+...+.. ...+.+++++++++.++|.+..++.+ ++|||||||||+||||
T Consensus 91 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~-~~~~~~~~v~~~l~~l~L~~~~~~~~------~~LSgGq~QRVaLARA 163 (377)
T PRK11607 91 RPINMMFQSYALFPHMTVEQNIAFGLKQDKL-PKAEIASRVNEMLGLVHMQEFAKRKP------HQLSGGQRQRVALARS 163 (377)
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhcCCh------hhCCHHHHHHHHHHHH
Confidence 5799999999999999999999998654321 11234567899999999998887754 5999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|+.+|++|||||||++||..++..+.+.|+++.+ .|.|+|+++|++ +++..++|++++|++|+++..|+++++.+
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999875 489999988887 58899999999999999999999988764
No 48
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-44 Score=361.27 Aligned_cols=218 Identities=26% Similarity=0.362 Sum_probs=190.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~------ 178 (641)
.+.++|++++|++. +.+|+|+|+.+++||.++|+|+||||||||+++|+|+++|.. |+|.++|.+..
T Consensus 3 ~i~~~~l~~~y~~~----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~---G~v~~~g~~~~~~~~~~ 75 (235)
T COG1122 3 MIEAENLSFRYPGR----KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS---GEVLVDGLDTSSEKSLL 75 (235)
T ss_pred eEEEEEEEEEcCCC----ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCC---CEEEECCeeccchhhHH
Confidence 57899999999632 689999999999999999999999999999999999999975 99999998743
Q ss_pred CCCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 179 MPYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 179 ~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
..++.+|||+|++ +++ .-||.|.+.|+.... +....+.+++++++++.+|+.+++++. +..|||||||||
T Consensus 76 ~~~~~vG~VfQnpd~q~~-~~tV~~evafg~~n~-g~~~~e~~~rv~~~l~~vgl~~~~~r~------p~~LSGGqkqRv 147 (235)
T COG1122 76 ELRQKVGLVFQNPDDQLF-GPTVEDEVAFGLENL-GLPREEIEERVAEALELVGLEELLDRP------PFNLSGGQKQRV 147 (235)
T ss_pred HhhcceEEEEECcccccc-cCcHHHHHhhchhhc-CCCHHHHHHHHHHHHHHcCchhhccCC------ccccCCcceeeH
Confidence 1246799999986 455 559999999986532 222224678899999999999998774 569999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
+||.+|+.+|++|+|||||||||+..+..+++.+++|.++ |.|+|+++|+. +.+..+|||+++|++|+++++|++.++
T Consensus 148 aIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~-~~~~~~ad~v~vl~~G~i~~~g~p~~i 226 (235)
T COG1122 148 AIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAEI 226 (235)
T ss_pred HhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcH-HHHHhhCCEEEEEECCEEeecCCHHHH
Confidence 9999999999999999999999999999999999999977 68999988876 689999999999999999999999877
Q ss_pred HHH
Q 006548 336 LQH 338 (641)
Q Consensus 336 ~~~ 338 (641)
++.
T Consensus 227 ~~~ 229 (235)
T COG1122 227 FND 229 (235)
T ss_pred hhh
Confidence 653
No 49
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.4e-43 Score=358.81 Aligned_cols=215 Identities=23% Similarity=0.361 Sum_probs=185.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03218 1 LRAENLSKRYG-----KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDS---GKILLDGQDITKLPMHKR 72 (232)
T ss_pred CeEEEEEEEeC-----CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccCCHhHH
Confidence 46889999984 3469999999999999999999999999999999999999875 999999986421
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
..+.++|++|++.+++.+||+||+.+....... ......++++++++.+++.+..++.+ +.|||||||||+||
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~la 145 (232)
T cd03218 73 ARLGIGYLPQEASIFRKLTVEENILAVLEIRGL-SKKEREEKLEELLEEFHITHLRKSKA------SSLSGGERRRVEIA 145 (232)
T ss_pred HhccEEEecCCccccccCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHHHHHHHHH
Confidence 124599999999999999999999876433211 11123456789999999988777754 49999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++. ++.++||++++|++|+++..|+.+++.
T Consensus 146 ~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 146 RALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 9999999999999999999999999999999999877899999888874 789999999999999999999887653
No 50
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-43 Score=370.65 Aligned_cols=231 Identities=23% Similarity=0.294 Sum_probs=191.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++|+++.|..++...+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~~ 78 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE---GKVTVGDIVVSSTSKQKE 78 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCC---cEEEECCEECcccccccc
Confidence 78999999995322122469999999999999999999999999999999999999875 999999987531
Q ss_pred ---CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHHH
Q 006548 180 ---PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGER 253 (641)
Q Consensus 180 ---~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGer 253 (641)
.++.++||+|++ .+++ .||.||+.|+..... ....+.++++.++++.+||. +..++. ++.||||||
T Consensus 79 ~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~------~~~LSgGqk 150 (288)
T PRK13643 79 IKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFG-IPKEKAEKIAAEKLEMVGLADEFWEKS------PFELSGGQM 150 (288)
T ss_pred HHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHcCCChhhccCC------cccCCHHHH
Confidence 124699999986 5564 699999998754321 11123456788999999995 466654 459999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ +++.++||+|++|++|++++.|+++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~ 229 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTPS 229 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999987799999998887 5788999999999999999999999
Q ss_pred HHHH---HhhhcCCCCCC
Q 006548 334 ACLQ---HFSNAGFPCPI 348 (641)
Q Consensus 334 ~~~~---~f~~~g~~~~~ 348 (641)
++.+ .+...|+.+|.
T Consensus 230 ~~~~~~~~~~~~~~~~p~ 247 (288)
T PRK13643 230 DVFQEVDFLKAHELGVPK 247 (288)
T ss_pred HHHcCHHHHHHcCCCCCh
Confidence 8753 34455666554
No 51
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.1e-45 Score=348.58 Aligned_cols=218 Identities=23% Similarity=0.407 Sum_probs=193.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P--- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-~--- 180 (641)
.+..+||.++|+ +++++++||+.+++||+++++|||||||||.+.++.|+.+|++ |+|.+||.++.. +
T Consensus 4 ~L~a~~l~K~y~-----kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~---G~i~ld~~diT~lPm~~ 75 (243)
T COG1137 4 TLVAENLAKSYK-----KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS---GKILLDDEDITKLPMHK 75 (243)
T ss_pred EEEehhhhHhhC-----CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCC---ceEEECCcccccCChHH
Confidence 588999999884 5689999999999999999999999999999999999999986 999999987542 1
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCcc-chHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF-CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
+..+||+||++.+|..+||+||+......+..... .+++.+++++|+++++.++++++-. .||||||+|+.
T Consensus 76 RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~------sLSGGERRR~E 149 (243)
T COG1137 76 RARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAY------SLSGGERRRVE 149 (243)
T ss_pred HhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCccc------ccccchHHHHH
Confidence 23689999999999999999999877665542211 2345568899999999999998644 99999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|||||+.+|+.++||||++|.||.+..+|.++++.|++.|..|++|-|.- .|...+|||.+++++|++.++|+++++.+
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNV-REtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNV-RETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccH-HHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 99999999999999999999999999999999999999999999966654 58899999999999999999999998864
No 52
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-43 Score=347.16 Aligned_cols=216 Identities=23% Similarity=0.338 Sum_probs=188.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++||+..| +..++|++||+++++||+++|+|+||+|||||||+|+|+.++.+ |+|.++|+++...
T Consensus 3 mL~v~~l~~~Y-----G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~---G~I~~~G~dit~~p~~~ 74 (237)
T COG0410 3 MLEVENLSAGY-----GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRS---GRIIFDGEDITGLPPHE 74 (237)
T ss_pred ceeEEeEeecc-----cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eeEEECCeecCCCCHHH
Confidence 58999999998 34689999999999999999999999999999999999999864 9999999986431
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcC-CchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-LSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
+..++||||...+||.|||+|||..++..+.... .....++++.+.+- |.+..+++-| .|||||||.++
T Consensus 75 r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~--~~~~~~e~v~~lFP~Lker~~~~aG------~LSGGEQQMLA 146 (237)
T COG0410 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKE--AQERDLEEVYELFPRLKERRNQRAG------TLSGGEQQMLA 146 (237)
T ss_pred HHhCCeEeCcccccchhhCcHHHHHhhhhhcccccc--cccccHHHHHHHChhHHHHhcCccc------CCChHHHHHHH
Confidence 3569999999999999999999988765432211 12222788888885 6777777665 89999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||||+.+|++|+|||||.||-|.-..+|.+.+++++++ |.||++ ++|....+.+++||.++|.+|++++.|+.+++.
T Consensus 147 iaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlL-VEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 147 IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILL-VEQNARFALEIADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred HHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEE-EeccHHHHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999966 668887 688888999999999999999999999998876
Q ss_pred H
Q 006548 337 Q 337 (641)
Q Consensus 337 ~ 337 (641)
.
T Consensus 226 ~ 226 (237)
T COG0410 226 A 226 (237)
T ss_pred c
Confidence 4
No 53
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.6e-43 Score=358.89 Aligned_cols=216 Identities=23% Similarity=0.337 Sum_probs=185.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~-----~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 2 IEFKNVSKHFG-----PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITS---GDLIVDGLKVNDPKVDER 73 (240)
T ss_pred EEEEeEEEEEC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCcCChhHH
Confidence 68999999884 3469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
.++.++|++|++.+++.+||+||+.+...........+..+++.++++.+||.+..++.+ ..||||||||++|
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G~~qrv~l 147 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP------SELSGGQQQRVAI 147 (240)
T ss_pred HHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcCh------hhcCHHHHHHHHH
Confidence 124699999999999999999999875421111111123456889999999988777754 4999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++. ++.++||++++|++|++++.|+++++.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999999999999999999999877999999999874 788899999999999999999887654
No 54
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-43 Score=377.57 Aligned_cols=219 Identities=23% Similarity=0.299 Sum_probs=189.0
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----- 180 (641)
++++||++.|+.++ ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+....
T Consensus 2 i~i~~l~~~y~~~~-~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~---G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 2 IELKNISKVFPQGG-RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTS---GRVLVDGQDLTALSEKEL 77 (343)
T ss_pred EEEEeEEEEeCCCC-CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCcCCHHHH
Confidence 68999999995211 13579999999999999999999999999999999999999875 9999999875321
Q ss_pred ---CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
++.++|++|++.+++.+||+||+.+....... ...+.+++++++++.+||.+..++.+ .+|||||||||+
T Consensus 78 ~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LSgGq~qRv~ 150 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGT-PKAEIKARVTELLELVGLSDKADRYP------AQLSGGQKQRVA 150 (343)
T ss_pred HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhhCCh------hhCCHHHHHHHH
Confidence 24699999999999999999999887543311 11123467889999999998887754 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999865 89999988887 4788999999999999999999988775
No 55
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-43 Score=358.26 Aligned_cols=219 Identities=23% Similarity=0.301 Sum_probs=186.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----- 180 (641)
++++|+++.|.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 2 i~~~~l~~~~~~~~-~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 2 IELKNVSKVFGDTG-GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTS---GSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred eEEecceEEccCCC-CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcccCCHHHH
Confidence 67899999985310 11379999999999999999999999999999999999999875 9999999875321
Q ss_pred ---CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
.+.++|++|++.+++.+|++||+.+....+. .......+.++++++.++|.+..++.+ ..|||||||||+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~ 150 (233)
T cd03258 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG-VPKAEIEERVLELLELVGLEDKADAYP------AQLSGGQKQRVG 150 (233)
T ss_pred HHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCChhhhhcCh------hhCCHHHHHHHH
Confidence 2469999999999999999999988654321 111123456889999999988877754 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999865 89999998887 4788999999999999999999877653
No 56
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.2e-43 Score=352.86 Aligned_cols=209 Identities=24% Similarity=0.388 Sum_probs=180.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 182 (641)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..+
T Consensus 1 i~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~v~~~g~~~~~~~~~~~ 72 (213)
T cd03301 1 VELENVTKRFG-----NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTS---GRIYIGGRDVTDLPPKDR 72 (213)
T ss_pred CEEEeeEEEEC-----CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCcCCcccc
Confidence 36899999884 3469999999999999999999999999999999999998875 999999987532 124
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
.++|++|++.+++.+||+||+.+...... ....+.+++++++++.+|+.+..++.+ ..||||||||++|||+|
T Consensus 73 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qr~~laral 145 (213)
T cd03301 73 DIAMVFQNYALYPHMTVYDNIAFGLKLRK-VPKDEIDERVREVAELLQIEHLLDRKP------KQLSGGQRQRVALGRAI 145 (213)
T ss_pred eEEEEecChhhccCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCHHHHhCCh------hhCCHHHHHHHHHHHHH
Confidence 69999999999989999999988654321 111123456889999999998887755 49999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999864 89999998887 4788999999999999999875
No 57
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-43 Score=366.63 Aligned_cols=222 Identities=23% Similarity=0.324 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|+......+.+|+|||+++++||++||+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS---GKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---cEEEECCEECCCcCccH
Confidence 478999999985322122579999999999999999999999999999999999999875 999999987532
Q ss_pred --CCceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc--hHHhhhhcCCCCCCCCCHHHHH
Q 006548 180 --PYGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 180 --~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~~LSGGerq 254 (641)
..+.+|||+|++. .+...||+||+.+..... .....+..++++++++.+||. +..++. ++.|||||||
T Consensus 79 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~------~~~LSgGq~q 151 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL-GLSEEEIENRVKRAMNIVGLDYEDYKDKS------PFELSGGQKR 151 (287)
T ss_pred HHHhhceEEEecCchhccccccHHHHHHhHHHHC-CCCHHHHHHHHHHHHHHcCCCchhhccCC------cccCCHHHHH
Confidence 1246999999863 333579999998865432 111122446789999999996 556654 4599999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
|++|||||+.+|++|||||||+|||+.++..+.++|++++++ |+|||+++|+. .++.++||||++|++|++++.|+++
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999865 89999988886 5788899999999999999999998
Q ss_pred HHHH
Q 006548 334 ACLQ 337 (641)
Q Consensus 334 ~~~~ 337 (641)
++.+
T Consensus 231 ~~~~ 234 (287)
T PRK13637 231 EVFK 234 (287)
T ss_pred HHHh
Confidence 8754
No 58
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.6e-43 Score=357.40 Aligned_cols=214 Identities=25% Similarity=0.342 Sum_probs=181.0
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC-----CCCCCceeEEEECCEeCCC-
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-----PHSARMYGEVFVNGAKSEM- 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~-----~~~~~~~G~I~~~G~~~~~- 179 (641)
++++||++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+. +|.+ |+|.++|++...
T Consensus 1 i~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~---G~i~~~g~~~~~~ 72 (227)
T cd03260 1 IELRDLNVYYG-----DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE---GEVLLDGKDIYDL 72 (227)
T ss_pred CEEEEEEEEcC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCC---eEEEECCEEhhhc
Confidence 46899999884 346999999999999999999999999999999999998 7764 999999987421
Q ss_pred ------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHH
Q 006548 180 ------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253 (641)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGer 253 (641)
..+.++|++|++.++ .+||+||+.+.............+++++++++.+|+.+..++.+. +.+||||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~~LSgG~~ 147 (227)
T cd03260 73 DVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH----ALGLSGGQQ 147 (227)
T ss_pred chHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC----cccCCHHHH
Confidence 124699999999888 799999998865432111111134678899999999887766420 359999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ +|||+++|++ +++.++||++++|++|++++.|+++
T Consensus 148 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (227)
T cd03260 148 QRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNM-QQAARVADRTAFLLNGRLVEFGPTE 225 (227)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccH-HHHHHhCCEEEEEeCCEEEEecCcc
Confidence 9999999999999999999999999999999999999999877 8999988887 4788899999999999999999875
Q ss_pred H
Q 006548 334 A 334 (641)
Q Consensus 334 ~ 334 (641)
+
T Consensus 226 ~ 226 (227)
T cd03260 226 Q 226 (227)
T ss_pred c
Confidence 4
No 59
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-43 Score=359.24 Aligned_cols=217 Identities=28% Similarity=0.402 Sum_probs=183.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----- 180 (641)
++++||++.|.+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++....
T Consensus 1 l~~~~l~~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 73 (241)
T cd03256 1 IEVENLSKTYPN----GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTS---GSVLIDGTDINKLKGKAL 73 (241)
T ss_pred CEEeeEEEecCC----ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEEECCEeccccCHhHH
Confidence 368899998842 1569999999999999999999999999999999999998865 9999999875321
Q ss_pred ---CceEEEEcCCCccCCCCCHHHHHHHHHHhc-------CCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCH
Q 006548 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQ-------LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (641)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~-------~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSG 250 (641)
.+.++|++|++.+++.+||+||+.+..... .........+++.++++.++|.+..++.+ .+|||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~ 147 (241)
T cd03256 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA------DQLSG 147 (241)
T ss_pred HHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc------ccCCH
Confidence 246999999999999999999998753211 00011123456888999999987776644 59999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 006548 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (641)
Q Consensus 251 GerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (641)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.++||++++|++|++++.
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~~ 226 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIVFD 226 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999999999999999999999999999864 899999988874 78889999999999999999
Q ss_pred eChhHHH
Q 006548 330 GETLACL 336 (641)
Q Consensus 330 G~~~~~~ 336 (641)
|++++..
T Consensus 227 ~~~~~~~ 233 (241)
T cd03256 227 GPPAELT 233 (241)
T ss_pred cCHHHhh
Confidence 9887753
No 60
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=3.1e-43 Score=360.37 Aligned_cols=217 Identities=24% Similarity=0.313 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (250)
T PRK11264 3 AIEVKNLVKKFH-----GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEA---GTIRVGDITIDTARSLS 74 (250)
T ss_pred cEEEeceEEEEC-----CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEcccccccc
Confidence 488999999984 2469999999999999999999999999999999999998875 999999986431
Q ss_pred --------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHH
Q 006548 180 --------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 180 --------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGG 251 (641)
.++.++|++|++.+++.+||+||+.++.............++++++++.+||.+..++.+ +.||||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G 148 (250)
T PRK11264 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYP------RRLSGG 148 (250)
T ss_pred chhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCCh------hhCChH
Confidence 124689999999999999999999875432111111123456889999999987777644 599999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|++++.|+
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~ 227 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM-SFARDVADRAIFMDQGRIVEQGP 227 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987799999988887 47889999999999999999998
Q ss_pred hhHHH
Q 006548 332 TLACL 336 (641)
Q Consensus 332 ~~~~~ 336 (641)
++++.
T Consensus 228 ~~~~~ 232 (250)
T PRK11264 228 AKALF 232 (250)
T ss_pred HHHHh
Confidence 87653
No 61
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2.3e-43 Score=354.72 Aligned_cols=213 Identities=24% Similarity=0.374 Sum_probs=182.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++||++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 72 (222)
T cd03224 1 LEVENLNAGYG-----KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRS---GSIRFDGRDITGLPPHER 72 (222)
T ss_pred CEEeeEEeecC-----CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcCCCCHHHH
Confidence 46899999884 3469999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHc-CCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM-SLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
..+.++|++|++.+++.+|++||+.+...... ..+..++++++++.+ ++.+..++.+ +.||||||||++|
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~l~~~~~~~~------~~LS~G~~qrv~l 143 (222)
T cd03224 73 ARAGIGYVPEGRRIFPELTVEENLLLGAYARR---RAKRKARLERVYELFPRLKERRKQLA------GTLSGGEQQMLAI 143 (222)
T ss_pred HhcCeEEeccccccCCCCcHHHHHHHHhhhcC---chhHHHHHHHHHHHHHhhhhhhhCch------hhCCHHHHHHHHH
Confidence 12459999999999999999999988654321 112345577788888 5776666644 5999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
||||+.+|++|||||||+|||+.++..+++.|++++++|+|+|+++|++ .++.++||++++|++|+++..|+++++.
T Consensus 144 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 144 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999999999999999987789999988887 5788999999999999999999877653
No 62
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.9e-43 Score=381.46 Aligned_cols=217 Identities=27% Similarity=0.383 Sum_probs=189.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|. ++.+|+|+|+.+++||+++|+||||||||||||+|+|+++|.+ |+|.++|++...
T Consensus 3 ~L~~~nls~~y~-----~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~s---G~I~l~G~~i~~~~~~~ 74 (402)
T PRK09536 3 MIDVSDLSVEFG-----DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA---GTVLVAGDDVEALSARA 74 (402)
T ss_pred eEEEeeEEEEEC-----CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCC---cEEEECCEEcCcCCHHH
Confidence 589999999984 3579999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhc---CCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQ---LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
..+.++||+|+..+++.+||+||+.++.... ........+++++++++.+|+.+..++.+ ++|||||||||
T Consensus 75 ~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~------~~LSgGerQRv 148 (402)
T PRK09536 75 ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV------TSLSGGERQRV 148 (402)
T ss_pred HhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh------hhCCHHHHHHH
Confidence 1356999999999989999999998753211 11101124567899999999998888755 49999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
+|||||+++|++|||||||+|||+.++.+++++|++++++|+|||+++|++ +++.++|||+++|++|++++.|++++++
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999987789999988886 5888999999999999999999998864
No 63
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2e-43 Score=371.80 Aligned_cols=206 Identities=27% Similarity=0.327 Sum_probs=181.0
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----CceEEEEcCCCccCCCC
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----YGSYGFVERETTLIGSL 197 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----~~~~~yv~Q~~~l~~~l 197 (641)
.+.+|+|+|+.+++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+.... ++.+||++|++.+++.+
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTS---GTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 3569999999999999999999999999999999999999875 9999999875321 24699999999999999
Q ss_pred CHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCC
Q 006548 198 TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYH 277 (641)
Q Consensus 198 TV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsg 277 (641)
||+||+.+.+..+.. .....+++++++++.+||.+..++.++ .|||||||||+||+||+.+|++|||||||+|
T Consensus 82 tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 82 TGRENLEMMGRLYGL-PKDEAEERAEELLELFELGEAADRPVG------TYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred cHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhHhCCchh------hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999886654311 111234578999999999988887654 9999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHH
Q 006548 278 LDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (641)
Q Consensus 278 LD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (641)
||+.++..+.+.|++++++|+|||+++|++ +++.++||+|++|++|++++.|+++++.+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999987899999988887 588899999999999999999999887653
No 64
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-43 Score=367.17 Aligned_cols=220 Identities=23% Similarity=0.289 Sum_probs=185.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|++.+...+++|+|||+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS---GTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECCEECccccccc
Confidence 378999999995322122569999999999999999999999999999999999999875 999999987531
Q ss_pred ----CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHH
Q 006548 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGe 252 (641)
..+.++||+|++ .++ ..||+||+.|+..... ....+..++++++++.+||. +..++. ++.|||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~~LSgGq 150 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFG-VSEEDAKQKAREMIELVGLPEELLARS------PFELSGGQ 150 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCCChhhhhCC------cccCCHHH
Confidence 124699999986 455 4799999988754321 11112345789999999996 566664 45999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
||||+|||+|+.+|++|||||||+|||+.++..+.++|++++++ |.|||+++|+. .++.++||||++|++|++++.|+
T Consensus 151 ~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv~~l~~G~i~~~g~ 229 (290)
T PRK13634 151 MRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQIVVMHKGTVFLQGT 229 (290)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999865 89999988887 47889999999999999999999
Q ss_pred hhHHH
Q 006548 332 TLACL 336 (641)
Q Consensus 332 ~~~~~ 336 (641)
++++.
T Consensus 230 ~~~~~ 234 (290)
T PRK13634 230 PREIF 234 (290)
T ss_pred HHHHh
Confidence 88875
No 65
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.6e-43 Score=353.05 Aligned_cols=215 Identities=27% Similarity=0.377 Sum_probs=183.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 181 (641)
++++||++.|.+. .+++|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+... ..
T Consensus 1 l~~~~l~~~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (220)
T cd03263 1 LQIRNLTKTYKKG---TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTS---GTAYINGYSIRTDRKAAR 74 (220)
T ss_pred CEEEeeEEEeCCC---CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccchHHHh
Confidence 4689999988421 2569999999999999999999999999999999999998875 999999987532 12
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++|++.+++.+||+||+.+....... ...+..++++++++.++|.+..++.++ .||||||||++||||
T Consensus 75 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~qrv~la~a 147 (220)
T cd03263 75 QSLGYCPQFDALFDELTVREHLRFYARLKGL-PKSEIKEEVELLLRVLGLTDKANKRAR------TLSGGMKRKLSLAIA 147 (220)
T ss_pred hhEEEecCcCCccccCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHhChhh------hCCHHHHHHHHHHHH
Confidence 4699999999999999999999876543311 111234568899999999888877554 999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|+++|++. .+.++||++++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999999976 589999888874 78889999999999999999987653
No 66
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=5.2e-43 Score=362.88 Aligned_cols=217 Identities=21% Similarity=0.309 Sum_probs=186.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|.+...
T Consensus 7 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (269)
T PRK11831 7 LVDMRGVSFTRG-----NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDH---GEILFDGENIPAMSRSR 78 (269)
T ss_pred eEEEeCeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEccccChhh
Confidence 589999999884 3469999999999999999999999999999999999998875 999999986431
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
..+.++|++|+..+++.+||.||+.+..............+++.++++.+||.+..++.+ ..|||||||||
T Consensus 79 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgGq~qrv 152 (269)
T PRK11831 79 LYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMP------SELSGGMARRA 152 (269)
T ss_pred HHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHHHHHH
Confidence 124699999999999999999999876432111111123456788999999988887755 49999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+++++
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999865 89999988886 578899999999999999999998775
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 232 ~ 232 (269)
T PRK11831 232 Q 232 (269)
T ss_pred h
Confidence 4
No 67
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=4.8e-43 Score=368.71 Aligned_cols=216 Identities=26% Similarity=0.335 Sum_probs=189.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++|++++|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+....
T Consensus 2 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~---G~i~i~g~~~~~~~~~~ 73 (301)
T TIGR03522 2 SIRVSSLTKLYG-----TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDS---GSVQVCGEDVLQNPKEV 73 (301)
T ss_pred EEEEEEEEEEEC-----CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccChHHH
Confidence 478999999984 3569999999999999999999999999999999999999875 9999999875321
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
++.+||++|++.+++.+||.||+.+.+.+... ...+..++++++++.+||.+..++.++ .|||||||||+||+
T Consensus 74 ~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~------~LS~G~~qrv~la~ 146 (301)
T TIGR03522 74 QRNIGYLPEHNPLYLDMYVREYLQFIAGIYGM-KGQLLKQRVEEMIELVGLRPEQHKKIG------QLSKGYRQRVGLAQ 146 (301)
T ss_pred HhceEEecCCCCCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHCCCchHhcCchh------hCCHHHHHHHHHHH
Confidence 34699999999999999999999887654311 111234568999999999988888654 99999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++|||+++|++|++++.|+++++..
T Consensus 147 al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 147 ALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999965 78999988887 58999999999999999999999998765
No 68
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-43 Score=361.20 Aligned_cols=227 Identities=24% Similarity=0.302 Sum_probs=193.1
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-C-CCCceeEEEECCEeCC-----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-H-SARMYGEVFVNGAKSE----- 178 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~-~-~~~~~G~I~~~G~~~~----- 178 (641)
++++||++.|.... +..++++||||++++||++||+|+|||||||+.++|.|+++ + ....+|+|.++|++..
T Consensus 2 L~v~nL~v~f~~~~-g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTDA-GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecCC-ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 68999999996532 24679999999999999999999999999999999999998 4 3336799999998631
Q ss_pred ----CCCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHH
Q 006548 179 ----MPYGSYGFVERET--TLIGSLTVREYLYYSALLQLPG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 179 ----~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGG 251 (641)
.+.+.+++++|++ .|.|.+||.+.+......+... ...+..+++.++|+.+||.+-..+. +.||++||||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~---~~YPhelSGG 157 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRL---KSYPHELSGG 157 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHH---hhCCcccCCc
Confidence 1235799999995 7899999999998776654322 1223466789999999998654443 4589999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
|||||.||.||+.+|++||.||||++||...+.+|+++|+++++ .|.++|++||+. ..+.++||||+||..|++|+.|
T Consensus 158 MrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl-~vva~~aDri~VMYaG~iVE~g 236 (316)
T COG0444 158 MRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL-GVVAEIADRVAVMYAGRIVEEG 236 (316)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceEEEEECcEEEEeC
Confidence 99999999999999999999999999999999999999999996 599999987776 5899999999999999999999
Q ss_pred ChhHHHH
Q 006548 331 ETLACLQ 337 (641)
Q Consensus 331 ~~~~~~~ 337 (641)
+++++++
T Consensus 237 ~~~~i~~ 243 (316)
T COG0444 237 PVEEIFK 243 (316)
T ss_pred CHHHHhc
Confidence 9998764
No 69
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=4.4e-43 Score=351.89 Aligned_cols=213 Identities=30% Similarity=0.416 Sum_probs=182.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 181 (641)
++++|+++.|+++. ....+|+|+|+++++||+++|+|+||||||||+++|+|+++|++ |+|.++|++... .+
T Consensus 2 l~~~~v~~~~~~~~-~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 2 ITADALTKRFRDVK-KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA---GFATVDGFDVVKEPAEAR 77 (218)
T ss_pred eEEEEEEEecCCCC-ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEEECCEEcccCHHHHH
Confidence 67899999985321 11269999999999999999999999999999999999999875 999999987532 12
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++|++.+++.+||+||+.+....+.. ...+..++++++++.+||.+..++.++ .||||||||++||||
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~qrv~lara 150 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLYGL-KGDELTARLEELADRLGMEELLDRRVG------GFSTGMRQKVAIARA 150 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHhhhhh------hcCHHHHHHHHHHHH
Confidence 4699999999999999999999876543211 111245678899999999988888654 999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++ .++.++||++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999987799999998887 4788999999999999998754
No 70
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-43 Score=368.81 Aligned_cols=221 Identities=20% Similarity=0.244 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~------ 178 (641)
.++++||++.|+++......+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~---G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT---GTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEEeceecccccccc
Confidence 478999999996432223469999999999999999999999999999999999999875 99999986431
Q ss_pred -----------------------CCCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-
Q 006548 179 -----------------------MPYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS- 232 (641)
Q Consensus 179 -----------------------~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~- 232 (641)
...+.+|||+|++ .++ ..||+||+.|+.... .....+..++++++++.+||.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~ 156 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM-GVSKEEAKKRAAKYIELVGLDE 156 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHcCCCh
Confidence 0124689999985 444 579999998875432 111123456789999999996
Q ss_pred hHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHH
Q 006548 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVF 312 (641)
Q Consensus 233 ~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~ 312 (641)
+..++.+ ..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||+++|+. +++.
T Consensus 157 ~~~~~~~------~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~ 229 (305)
T PRK13651 157 SYLQRSP------FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL-DNVL 229 (305)
T ss_pred hhhhCCh------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH-HHHH
Confidence 6777654 59999999999999999999999999999999999999999999999987799999988886 4788
Q ss_pred hcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 313 GLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 313 ~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
++||||++|++|++++.|+++++..
T Consensus 230 ~~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 230 EWTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred HhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999988763
No 71
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=3.1e-43 Score=350.60 Aligned_cols=205 Identities=26% Similarity=0.364 Sum_probs=179.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 182 (641)
++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+... .++
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 72 (208)
T cd03268 1 LKTNDLTKTYG-----KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDS---GEITFDGKSYQKNIEALR 72 (208)
T ss_pred CEEEEEEEEEC-----CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCCcccchHHHHh
Confidence 36899999884 3469999999999999999999999999999999999998875 999999986432 134
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
.++|++|++.+++.+||+||+.+...... ..+++++++++.+++.+..++.++ .|||||||||+|||+|
T Consensus 73 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~qrv~la~al 141 (208)
T cd03268 73 RIGALIEAPGFYPNLTARENLRLLARLLG-----IRKKRIDEVLDVVGLKDSAKKKVK------GFSLGMKQRLGIALAL 141 (208)
T ss_pred hEEEecCCCccCccCcHHHHHHHHHHhcC-----CcHHHHHHHHHHcCCHHHHhhhHh------hCCHHHHHHHHHHHHH
Confidence 69999999999999999999987654221 124568899999999988887654 9999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++ .++.++||++++|++|++++.|
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 142 LGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999987889999988887 4788899999999999998765
No 72
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-43 Score=351.00 Aligned_cols=209 Identities=25% Similarity=0.428 Sum_probs=180.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCceE
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGSY 184 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-~~~~~ 184 (641)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... .++.+
T Consensus 1 l~~~~l~~~~~-----~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~i 72 (210)
T cd03269 1 LEVENVTKRFG-----RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDS---GEVLFDGKPLDIAARNRI 72 (210)
T ss_pred CEEEEEEEEEC-----CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCCchhHHHHccE
Confidence 46899999884 3469999999999999999999999999999999999998875 999999976432 23569
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHh
Q 006548 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~ 264 (641)
+|++|+..+++.+||+||+.+....+.. ......+.++++++.+|+.+..++.+ ++||||||||++||++|+.
T Consensus 73 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~la~al~~ 145 (210)
T cd03269 73 GYLPEERGLYPKMKVIDQLVYLAQLKGL-KKEEARRRIDEWLERLELSEYANKRV------EELSKGNQQKVQFIAAVIH 145 (210)
T ss_pred EEeccCCcCCcCCcHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHcCChHHHhCcH------hhCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999876543311 11123557889999999988877755 4999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 265 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|
T Consensus 146 ~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 146 DPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999999999987789999988887 4788899999999999998754
No 73
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=3.5e-43 Score=376.39 Aligned_cols=206 Identities=26% Similarity=0.345 Sum_probs=181.4
Q ss_pred cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------CceEEEEcCCC
Q 006548 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---------YGSYGFVERET 191 (641)
Q Consensus 121 ~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---------~~~~~yv~Q~~ 191 (641)
+.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|++ |+|.++|++.... ++.++||+|+.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~---G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTA---GQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCc---eEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 34579999999999999999999999999999999999999975 9999999875421 35799999999
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE
Q 006548 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFI 271 (641)
Q Consensus 192 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlL 271 (641)
.++|++||+||+.++..... ....+..+++.++++.+||.+..++.+ ..|||||||||+|||||+.+|++|||
T Consensus 81 ~l~~~~TV~eNi~~~~~~~~-~~~~~~~~~~~~~l~~vgL~~~~~~~p------~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELLG-WPEQERKEKALELLKLVGLEEYEHRYP------DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred cCCCCCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhcCCchhhhCCh------hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999998765431 111234567899999999998887755 49999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 272 DEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 272 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||||++||+.++..+.+.|++++++ |+|||+++|+. +++.++||+|++|++|+++..|+++++..
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 9999999999999999999999854 89999988887 57899999999999999999999988754
No 74
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=7.2e-43 Score=371.17 Aligned_cols=224 Identities=23% Similarity=0.277 Sum_probs=189.3
Q ss_pred ceEEEEeEEEEEecccc--------cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 006548 104 ASVVWKDLTVTIKGKRR--------YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~--------~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~ 175 (641)
..++++||++.|..++. ....+|+|||+++++||+++|+|+||||||||+++|+|+++|++ |+|.++|+
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~---G~I~~~G~ 83 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATD---GEVAWLGK 83 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCC---cEEEECCE
Confidence 46899999999953211 13579999999999999999999999999999999999998865 99999998
Q ss_pred eCCC--------CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHcCCc-hHHhhhhcCCC
Q 006548 176 KSEM--------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPG-FFCQRKNVVEDAIHAMSLS-DYANKLIGGHC 243 (641)
Q Consensus 176 ~~~~--------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~ 243 (641)
+... .++.++||+|++ .++|.+||.||+.+......+. ...+.+++++++++.+||. +..++
T Consensus 84 ~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~------ 157 (331)
T PRK15079 84 DLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINR------ 157 (331)
T ss_pred ECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcC------
Confidence 7532 124699999997 6889999999998865432111 1123456788999999994 45555
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
++++|||||||||+|||||+.+|++||+||||+|||+.++.+++++|+++.++ |.|+|+++|+. ..+.++||+|++|+
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl~ 236 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVMY 236 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 56699999999999999999999999999999999999999999999999865 89999988886 57889999999999
Q ss_pred CCeEEEEeChhHHHH
Q 006548 323 NGNTLFFGETLACLQ 337 (641)
Q Consensus 323 ~G~iv~~G~~~~~~~ 337 (641)
+|++++.|+++++.+
T Consensus 237 ~G~ive~g~~~~i~~ 251 (331)
T PRK15079 237 LGHAVELGTYDEVYH 251 (331)
T ss_pred CCEEEEEcCHHHHHc
Confidence 999999999887753
No 75
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-43 Score=368.81 Aligned_cols=221 Identities=20% Similarity=0.241 Sum_probs=185.8
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..++++|+++.|..+....+.+|+|+|+++++||++||+|+||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~---G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY---GTIQVGDIYIGDKKNN 96 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEECCEEccccccc
Confidence 4689999999995322123469999999999999999999999999999999999999875 999999976421
Q ss_pred -----------------CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhh
Q 006548 180 -----------------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLI 239 (641)
Q Consensus 180 -----------------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~i 239 (641)
.++.++||+|++ .+++ .||+||+.++.... .....+..++++++++.+||. +..++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~- 173 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL-GVKKSEAKKLAKFYLNKMGLDDSYLERS- 173 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCChhHhcCC-
Confidence 124699999986 5665 59999998865321 111112345788999999996 566654
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEE
Q 006548 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319 (641)
Q Consensus 240 g~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~ 319 (641)
+.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++ +++.++||+++
T Consensus 174 -----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~-~~~~~~adri~ 247 (320)
T PRK13631 174 -----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM-EHVLEVADEVI 247 (320)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEE
Confidence 459999999999999999999999999999999999999999999999987799999988886 47889999999
Q ss_pred EEeCCeEEEEeChhHHH
Q 006548 320 LLSNGNTLFFGETLACL 336 (641)
Q Consensus 320 vL~~G~iv~~G~~~~~~ 336 (641)
+|++|+++..|+++++.
T Consensus 248 vl~~G~i~~~g~~~~~~ 264 (320)
T PRK13631 248 VMDKGKILKTGTPYEIF 264 (320)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999998875
No 76
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2.8e-43 Score=359.15 Aligned_cols=216 Identities=28% Similarity=0.388 Sum_probs=183.0
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++||++.|.. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~----~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR02315 2 LEVENLSKVYPN----GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSS---GSILLEGTDITKLRGKKL 74 (243)
T ss_pred eEEEeeeeecCC----CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---cEEEECCEEhhhCCHHHH
Confidence 678999998841 3469999999999999999999999999999999999998875 999999987431
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhc------C-CCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQ------L-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~------~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSG 250 (641)
.++.++|++|++.+++.+||+||+.++.... . .......++++.++++.+||.+..++.+ ..|||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSg 148 (243)
T TIGR02315 75 RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA------DQLSG 148 (243)
T ss_pred HHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc------ccCCH
Confidence 1246999999999999999999997642110 0 0001123457889999999988777644 59999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 006548 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (641)
Q Consensus 251 GerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (641)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|+++|++ +++.++||++++|++|++++.
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~ 227 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVGLKAGEIVFD 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEec
Confidence 9999999999999999999999999999999999999999999764 89999988887 478899999999999999999
Q ss_pred eChhHH
Q 006548 330 GETLAC 335 (641)
Q Consensus 330 G~~~~~ 335 (641)
|+++++
T Consensus 228 ~~~~~~ 233 (243)
T TIGR02315 228 GAPSEL 233 (243)
T ss_pred CCHHHh
Confidence 988764
No 77
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.2e-42 Score=369.50 Aligned_cols=229 Identities=23% Similarity=0.274 Sum_probs=190.7
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..++++||++.|..++ +...+|+|||+++++||+++|+|+||||||||+++|+|+++|+...+|+|.++|+++..
T Consensus 11 ~~L~i~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 11 ALLDVKDLRVTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred ceEEEeCeEEEEecCC-CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 3689999999995321 23569999999999999999999999999999999999998852235999999987532
Q ss_pred -----CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHH
Q 006548 180 -----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 180 -----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe 252 (641)
..+.++||+|++ .++|.+|+.+++.+...........+..+++.++++.+||.+..+.. +.++++|||||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~---~~~p~~LSgG~ 166 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRM---KMYPHEFSGGM 166 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHh---cCCcccCCHHH
Confidence 124699999997 68899999999977654332111122446788999999997543331 34778999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
||||+|||||+.+|++||+||||+|||+.++..++++|++++++ |.|+|+++|+. ..+.++||+|++|++|++++.|+
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri~vm~~G~ive~g~ 245 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKVLVMYAGRTMEYGN 245 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999865 89999988887 47888999999999999999999
Q ss_pred hhHHHH
Q 006548 332 TLACLQ 337 (641)
Q Consensus 332 ~~~~~~ 337 (641)
++++.+
T Consensus 246 ~~~i~~ 251 (330)
T PRK09473 246 ARDVFY 251 (330)
T ss_pred HHHHHh
Confidence 988764
No 78
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-42 Score=360.63 Aligned_cols=216 Identities=26% Similarity=0.318 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++|+++.|+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 4 ~l~~~~l~~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 4 IIEVEDLHFRYKD----GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQR---GRVKVMGREVNAENEKW 76 (274)
T ss_pred eEEEEEEEEEeCC----CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---eEEEECCEECCCCCHHH
Confidence 5899999999842 2469999999999999999999999999999999999999875 9999999875321
Q ss_pred -CceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 181 -YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
.+.++|++|++. .++..||.||+.|+..... ......+++++++++.+||.+..++.+ ..|||||||||+|
T Consensus 77 ~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~------~~LSgG~~qrv~l 149 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMG-LDKDEVERRVEEALKAVRMWDFRDKPP------YHLSYGQKKRVAI 149 (274)
T ss_pred HHhhEEEEecChhhhhccCcHHHHHHhhHHHcC-CCHHHHHHHHHHHHHHCCCHHHhcCCh------hhCCHHHHHHHHH
Confidence 246999999963 3456899999988643221 111123456889999999988887755 4999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|++++.|+++++
T Consensus 150 araL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 150 AGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999999999999987799999988887 478889999999999999999998653
No 79
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-43 Score=355.84 Aligned_cols=217 Identities=23% Similarity=0.408 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (241)
T PRK10895 3 TLTAKNLAKAYK-----GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDA---GNIIIDDEDISLLPLHA 74 (241)
T ss_pred eEEEeCcEEEeC-----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHHH
Confidence 478999999984 3469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
.++.++|++|++.+++.+||+||+.+...........+.+.+++++++.+|+.+..++.+ +.|||||||||+|
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~l 148 (241)
T PRK10895 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG------QSLSGGERRRVEI 148 (241)
T ss_pred HHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcch------hhCCHHHHHHHHH
Confidence 124699999999999999999999875432211111123456889999999988776654 4999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 9999999999999999999999999999999999987799999998887 4788999999999999999999887654
No 80
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=3.8e-43 Score=352.35 Aligned_cols=208 Identities=29% Similarity=0.369 Sum_probs=176.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++||++.|++.+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 76 (218)
T cd03255 1 IELKNLSKTYGGGG-EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTS---GEVRVDGTDISKLSEKEL 76 (218)
T ss_pred CeEeeeEEEecCCC-cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCc---eeEEECCEehhhcchhHH
Confidence 46899999985311 11579999999999999999999999999999999999998875 999999987532
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
..+.++|++|++.+++.+||+||+.+....+.. .....+++++++++.+||.+..++.+ +.|||||||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv 149 (218)
T cd03255 77 AAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGV-PKKERRERAEELLERVGLGDRLNHYP------SELSGGQQQRV 149 (218)
T ss_pred HHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHcCCchhhhcCh------hhcCHHHHHHH
Confidence 124699999999999999999999887543311 11123457889999999988887755 49999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||+++|++. ++. +||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999999999999987 5899999999875 565 9999999999974
No 81
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.2e-43 Score=355.40 Aligned_cols=216 Identities=26% Similarity=0.426 Sum_probs=184.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-----~ 180 (641)
++++|+++.|.+ .+.+|+|+|+.+++||+++|+||||||||||+++|+|+++|+. |+|.++|.+... .
T Consensus 1 l~~~~l~~~~~~----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 73 (242)
T cd03295 1 IEFENVTKRYGG----GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTS---GEIFIDGEDIREQDPVEL 73 (242)
T ss_pred CEEEEEEEEeCC----cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCeEcCcCChHHh
Confidence 368899998842 1469999999999999999999999999999999999998875 999999986432 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch--HHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD--YANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
.+.++|++|++.+++.+||+||+.+...... .......+++.++++.+||.+ ..++.+ ..|||||||||+|
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~~------~~LS~G~~qrv~l 146 (242)
T cd03295 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLLK-WPKEKIRERADELLALVGLDPAEFADRYP------HELSGGQQQRVGV 146 (242)
T ss_pred hcceEEEccCccccCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCCcHHHHhcCh------hhCCHHHHHHHHH
Confidence 2468999999999999999999987654321 111223456889999999985 666644 5999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.++||++++|++|++++.|++++..
T Consensus 147 aral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 147 ARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999865 899999999874 788999999999999999999887653
No 82
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.2e-42 Score=355.66 Aligned_cols=217 Identities=22% Similarity=0.328 Sum_probs=182.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~~---- 179 (641)
++++||++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|+. ..+|+|.++|++...
T Consensus 2 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~ 76 (247)
T TIGR00972 2 IEIENLNLFYG-----EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76 (247)
T ss_pred EEEEEEEEEEC-----CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccc
Confidence 68999999984 2469999999999999999999999999999999999998750 014999999987532
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc----hHHhhhhcCCCCCCCCCHHH
Q 006548 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~~LSGGe 252 (641)
.++.++|++|+..+++ +|++||+.+....+......+..++++++++.+||. +..++ .++.|||||
T Consensus 77 ~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LSgG~ 149 (247)
T TIGR00972 77 VVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHD------SALGLSGGQ 149 (247)
T ss_pred hHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhC------CcccCCHHH
Confidence 1246999999998888 999999988654321011112345688999999997 55555 445999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ +|+|+++|++ +++.++||++++|++|++++.|++
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~ 227 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNM-QQAARISDRTAFFYDGELVEYGPT 227 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999999874 8999988887 478899999999999999999998
Q ss_pred hHHH
Q 006548 333 LACL 336 (641)
Q Consensus 333 ~~~~ 336 (641)
+++.
T Consensus 228 ~~~~ 231 (247)
T TIGR00972 228 EQIF 231 (247)
T ss_pred HHHH
Confidence 7754
No 83
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-43 Score=362.36 Aligned_cols=214 Identities=25% Similarity=0.330 Sum_probs=183.3
Q ss_pred EEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------
Q 006548 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------- 179 (641)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------- 179 (641)
.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 26 ~~~~~~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~---G~i~i~g~~~~~~~~~~~~ 97 (269)
T cd03294 26 SKEEILKKTG-----QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTS---GKVLIDGQDIAAMSRKELR 97 (269)
T ss_pred hhhhhhhhcC-----CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEccccChhhhh
Confidence 5567777663 4579999999999999999999999999999999999999875 999999986431
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
..+.++|++|++.+++.+||+||+.+....... ......++++++++.+||.+..++.+ .+|||||||||+
T Consensus 98 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~Gq~qrv~ 170 (269)
T cd03294 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGV-PRAEREERAAEALELVGLEGWEHKYP------DELSGGMQQRVG 170 (269)
T ss_pred hhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCHhHhhCCc------ccCCHHHHHHHH
Confidence 124699999999999999999999886543211 11123456889999999998888755 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 171 lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 171 LARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999754 89999988887 4788999999999999999999987764
No 84
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-43 Score=349.04 Aligned_cols=218 Identities=25% Similarity=0.332 Sum_probs=192.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++.+||++++ +...+++|||+++++||+++|+||||||||||+|+|+|.++|++ |+|.++|+++...
T Consensus 4 lL~v~~l~k~F-----GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~---G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 4 LLEVRGLSKRF-----GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSS---GTVIFRGRDITGLPPHR 75 (250)
T ss_pred eeeeccceeec-----CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCC---ceEEECCcccCCCCHHH
Confidence 57899999998 46789999999999999999999999999999999999999986 9999999976421
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhc--------CCCc---cchHHHHHHHHHHHcCCchHHhhhhcCCCCCCC
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQ--------LPGF---FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~--------~~~~---~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~ 247 (641)
+..++.-+|...+|+.|||.||+..++..+ .+.. ..+..++..++|+.+||.+.+++..+ +
T Consensus 76 iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~------~ 149 (250)
T COG0411 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG------N 149 (250)
T ss_pred HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh------c
Confidence 245788899999999999999998875533 1211 12345678899999999999999776 9
Q ss_pred CCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 248 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
||+|||||+.|||||+.+|++|+||||.+||.+....++.+.|++++++ |.||+++-|+ +..++.+||||+||+.|++
T Consensus 150 LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHd-M~~Vm~l~dri~Vl~~G~~ 228 (250)
T COG0411 150 LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHD-MKLVMGLADRIVVLNYGEV 228 (250)
T ss_pred CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEec-cHHHhhhccEEEeccCCcC
Confidence 9999999999999999999999999999999999999999999999975 6888886555 5799999999999999999
Q ss_pred EEEeChhHHHH
Q 006548 327 LFFGETLACLQ 337 (641)
Q Consensus 327 v~~G~~~~~~~ 337 (641)
+.+|+|+++.+
T Consensus 229 IAeG~P~eV~~ 239 (250)
T COG0411 229 IAEGTPEEVRN 239 (250)
T ss_pred cccCCHHHHhc
Confidence 99999999864
No 85
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-42 Score=354.84 Aligned_cols=215 Identities=24% Similarity=0.310 Sum_probs=183.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.+.++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 73 (242)
T PRK11124 2 SIQLNGINCFYG-----AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRS---GTLNIAGNHFDFSKTPS 73 (242)
T ss_pred EEEEEeeEEEEC-----CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEecccccccc
Confidence 478999999984 3469999999999999999999999999999999999998875 999999986420
Q ss_pred ------CCceEEEEcCCCccCCCCCHHHHHHHHH-HhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHH
Q 006548 180 ------PYGSYGFVERETTLIGSLTVREYLYYSA-LLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe 252 (641)
.++.++|++|++.+++.+||.||+.+.. ... .....+..+++.++++.+|+.+..++.+ ..|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G~ 146 (242)
T PRK11124 74 DKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL-GLSKDQALARAEKLLERLRLKPYADRFP------LHLSGGQ 146 (242)
T ss_pred hhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHH
Confidence 1246899999999999999999997532 221 1111123456889999999988877755 4999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++ .++.++||++++|++|++++.|++
T Consensus 147 ~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~i~~~~~~ 225 (242)
T PRK11124 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDA 225 (242)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999987799999988887 477889999999999999999987
Q ss_pred hHH
Q 006548 333 LAC 335 (641)
Q Consensus 333 ~~~ 335 (641)
++.
T Consensus 226 ~~~ 228 (242)
T PRK11124 226 SCF 228 (242)
T ss_pred HHh
Confidence 653
No 86
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.5e-42 Score=356.99 Aligned_cols=217 Identities=24% Similarity=0.262 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|. .+.+|+|+|+.+++||+++|+|+||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~ 76 (257)
T PRK10619 5 KLNVIDLHKRYG-----EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSE---GSIVVNGQTINLVRDKD 76 (257)
T ss_pred cEEEeeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEcccccccc
Confidence 589999999984 3469999999999999999999999999999999999998875 999999976421
Q ss_pred -------------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHH-hhhhcCCCCC
Q 006548 180 -------------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYA-NKLIGGHCYM 245 (641)
Q Consensus 180 -------------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~ig~~~~~ 245 (641)
..+.++|++|++.+++.+||+||+.++............++++.++++.+|+.+.. ++. +
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~ 150 (257)
T PRK10619 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKY------P 150 (257)
T ss_pred cccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCC------c
Confidence 12469999999999999999999987542111111122456788999999998764 553 4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++..+|||+++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQGK 229 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 59999999999999999999999999999999999999999999999987799999988887 47888999999999999
Q ss_pred EEEEeChhHHH
Q 006548 326 TLFFGETLACL 336 (641)
Q Consensus 326 iv~~G~~~~~~ 336 (641)
+++.|++++..
T Consensus 230 i~~~~~~~~~~ 240 (257)
T PRK10619 230 IEEEGAPEQLF 240 (257)
T ss_pred EEEeCCHHHhh
Confidence 99999887654
No 87
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=9.8e-43 Score=348.25 Aligned_cols=206 Identities=26% Similarity=0.304 Sum_probs=176.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++|+++.|++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 1 l~~~~l~~~~~~----~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 73 (214)
T cd03292 1 IEFINVTKTYPN----GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTS---GTIRVNGQDVSDLRGRAI 73 (214)
T ss_pred CEEEEEEEEeCC----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcccCCHHHH
Confidence 368899998842 2469999999999999999999999999999999999998875 999999987532
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
.++.++|++|++.+++.+|++||+.+....+. ....+..++++++++.+|+.+..++.+ .+||||||||++
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~ 146 (214)
T cd03292 74 PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG-VPPREIRKRVPAALELVGLSHKHRALP------AELSGGEQQRVA 146 (214)
T ss_pred HHHHHheEEEecCchhccCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHHHhhCCh------hhcCHHHHHHHH
Confidence 12469999999999999999999988654321 111123456889999999988877754 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++ .++.++||++++|++|++
T Consensus 147 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 147 IARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999987789999988887 478889999999999974
No 88
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-42 Score=362.90 Aligned_cols=221 Identities=21% Similarity=0.272 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|..+....+.+|+|||+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT---GTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEECccccccc
Confidence 478999999995322123569999999999999999999999999999999999999875 999999987532
Q ss_pred ----CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHH
Q 006548 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGe 252 (641)
.++.+|||+|++ .+++ .||.||+.++..... ....+..++++++++.+||. +..++. ++.|||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~~LSgGq 150 (286)
T PRK13646 79 YIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFK-MNLDEVKNYAHRLLMDLGFSRDVMSQS------PFQMSGGQ 150 (286)
T ss_pred hHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcC-CCHHHHHHHHHHHHHHcCCChhhhhCC------cccCCHHH
Confidence 124699999985 4555 599999988653321 11112456788999999996 666664 45999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|+|||+++|+. +++.++||++++|++|++++.|+
T Consensus 151 ~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dri~~l~~G~i~~~g~ 229 (286)
T PRK13646 151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADEVIVMKEGSIVSQTS 229 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999985 489999998887 47889999999999999999999
Q ss_pred hhHHHH
Q 006548 332 TLACLQ 337 (641)
Q Consensus 332 ~~~~~~ 337 (641)
++++..
T Consensus 230 ~~~~~~ 235 (286)
T PRK13646 230 PKELFK 235 (286)
T ss_pred HHHHHh
Confidence 988654
No 89
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-42 Score=367.08 Aligned_cols=223 Identities=20% Similarity=0.224 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEecccc-----cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC
Q 006548 105 SVVWKDLTVTIKGKRR-----YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~-----~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~ 179 (641)
.++++||++.|..+.. ....+|+|||+++++||++||+|+||||||||+++|+|++++.+ |+|.++|++...
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~---G~i~~~g~~l~~ 81 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTG---GELYYQGQDLLK 81 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCC---cEEEECCEEcCc
Confidence 5899999999963211 13579999999999999999999999999999999999998864 999999987532
Q ss_pred --------CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCC
Q 006548 180 --------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGL 248 (641)
Q Consensus 180 --------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~L 248 (641)
.++.++||+|++ .++|.+||.+++.+...........+.++++.++++.+||.+ ..++ ++++|
T Consensus 82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~------~p~~L 155 (327)
T PRK11308 82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDR------YPHMF 155 (327)
T ss_pred CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcC------CCccC
Confidence 124699999997 689999999999876543311111234567899999999963 5555 56699
Q ss_pred CHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 006548 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (641)
Q Consensus 249 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (641)
||||||||+|||||+.+|++||+||||+|||..++..++++|++++++ |.|+|+++|+. ..+.++||+|++|++|+++
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL-SVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999865 89999988876 5788899999999999999
Q ss_pred EEeChhHHHH
Q 006548 328 FFGETLACLQ 337 (641)
Q Consensus 328 ~~G~~~~~~~ 337 (641)
+.|+++++.+
T Consensus 235 e~g~~~~~~~ 244 (327)
T PRK11308 235 EKGTKEQIFN 244 (327)
T ss_pred EECCHHHHhc
Confidence 9999988754
No 90
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-42 Score=362.02 Aligned_cols=221 Identities=21% Similarity=0.217 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.+.++||++.|.+.....+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS---GTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEECccccccc
Confidence 478999999985321112569999999999999999999999999999999999999975 999999987521
Q ss_pred ----CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHH
Q 006548 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGe 252 (641)
.++.++|++|++ .++ .+||.||+.++..... ....+..++++++++.+||. +..++.+ +.|||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~~------~~LSgGq 150 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFG-FSEDEAKEKALKWLKKVGLSEDLISKSP------FELSGGQ 150 (287)
T ss_pred hHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCChhHhhCCc------ccCCHHH
Confidence 124699999996 355 5899999987654321 11112345688999999997 6777754 4999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ +++.++||++++|++|+++..|++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM-DDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999987799999988876 578899999999999999999998
Q ss_pred hHHHH
Q 006548 333 LACLQ 337 (641)
Q Consensus 333 ~~~~~ 337 (641)
+++.+
T Consensus 230 ~~~~~ 234 (287)
T PRK13641 230 KEIFS 234 (287)
T ss_pred HHHhc
Confidence 87653
No 91
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-42 Score=360.51 Aligned_cols=219 Identities=23% Similarity=0.296 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~--~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13650 4 IIEVKNLTFKYKED--QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAES---GQIIIDGDLLTEENVWD 78 (279)
T ss_pred eEEEEeEEEEcCCC--CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEECCcCcHHH
Confidence 58999999999521 12459999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCC-ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 PYGSYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 ~~~~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
..+.++|++|++ ..++..||+||+.++.... .....+..++++++++.+||.+..++.+ ..||||||||++|
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LSgGq~qrv~l 151 (279)
T PRK13650 79 IRHKIGMVFQNPDNQFVGATVEDDVAFGLENK-GIPHEEMKERVNEALELVGMQDFKEREP------ARLSGGQKQRVAI 151 (279)
T ss_pred HHhhceEEEcChHHhcccccHHHHHHhhHHhC-CCCHHHHHHHHHHHHHHCCCHhHhhCCc------ccCCHHHHHHHHH
Confidence 124689999997 4667789999998865332 1111224567899999999998887754 4999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|++. ++ ..||++++|++|+++..|+++++..
T Consensus 152 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13650 152 AGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELFS 229 (279)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHHc
Confidence 99999999999999999999999999999999999865 999999999975 56 5799999999999999999988753
No 92
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-42 Score=366.90 Aligned_cols=228 Identities=21% Similarity=0.225 Sum_probs=187.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEeCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-RMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~-~~~G~I~~~G~~~~~---- 179 (641)
.++++||++.|..++ ....+|+||||++++||++||+|+||||||||+++|+|++++.. ..+|+|.++|++...
T Consensus 3 ~L~v~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDES-APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCCC-ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 479999999995321 22469999999999999999999999999999999999987421 246999999987532
Q ss_pred -----CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHH
Q 006548 180 -----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 180 -----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe 252 (641)
..+.++||+|++ .++|.+||.+++.............+.++++.++++.+||.+..+.. +.++++|||||
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l---~~~p~~LSgGq 158 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRL---DVYPHQLSGGM 158 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHH---hCCchhCCHHH
Confidence 113699999997 58899999999876554321111123456789999999997532221 23667999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
||||+|||||+.+|++||+||||+|||+.++.+++++|+++++ .|.|+|+++|+. ..+.++||+|++|++|++++.|+
T Consensus 159 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~adri~vm~~G~ive~g~ 237 (326)
T PRK11022 159 SQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEAAHKIIVMYAGQVVETGK 237 (326)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999986 589999988887 47889999999999999999999
Q ss_pred hhHHHH
Q 006548 332 TLACLQ 337 (641)
Q Consensus 332 ~~~~~~ 337 (641)
++++.+
T Consensus 238 ~~~~~~ 243 (326)
T PRK11022 238 AHDIFR 243 (326)
T ss_pred HHHHhh
Confidence 988754
No 93
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-42 Score=355.08 Aligned_cols=212 Identities=26% Similarity=0.331 Sum_probs=182.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 185 (641)
++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+.......++
T Consensus 2 l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYG-----GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQH---GSITLDGKPVEGPGAERG 73 (255)
T ss_pred EEEEEEEEEeC-----CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCCcEE
Confidence 68999999884 2469999999999999999999999999999999999998875 999999987643334689
Q ss_pred EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhC
Q 006548 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (641)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (641)
|++|++.+++.+||+||+.+...... .......++++++++.+||.+..++.+ ..|||||||||+|||+|+.+
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgGq~qrl~laral~~~ 146 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAG-VEKMQRLEIAHQMLKKVGLEGAEKRYI------WQLSGGQRQRVGIARALAAN 146 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHcCChhHhhCCh------hhCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999987643321 111123456889999999988777654 49999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEe--CCeEEEEeChh
Q 006548 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS--NGNTLFFGETL 333 (641)
Q Consensus 266 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~--~G~iv~~G~~~ 333 (641)
|++|||||||+|||+.++..+.+.|+++++ +|+|||+++|++ +++.++||++++|+ +|+++..++.+
T Consensus 147 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 147 PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999999999999999999999964 589999988887 47889999999998 59999887653
No 94
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.3e-42 Score=347.62 Aligned_cols=205 Identities=24% Similarity=0.331 Sum_probs=176.8
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++|+++.+++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~----~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (214)
T TIGR02673 2 IEFHNVSKAYPG----GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSR---GQVRIAGEDVNRLRGRQL 74 (214)
T ss_pred EEEEeeeEEeCC----CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcccCCHHHH
Confidence 689999999841 2469999999999999999999999999999999999998875 999999987532
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
..+.++|++|++.+++.+||+||+.+...... ......+++++++++.++|.+..++.+ ..|||||||||+
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~ 147 (214)
T TIGR02673 75 PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG-KKEREIQRRVGAALRQVGLEHKADAFP------EQLSGGEQQRVA 147 (214)
T ss_pred HHHHhheEEEecChhhccCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHHHHHHH
Confidence 12469999999999999999999988654321 111123467889999999988777654 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++ +++.++||++++|++|+
T Consensus 148 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 148 IARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999999987789999998887 47888999999999985
No 95
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-42 Score=356.67 Aligned_cols=208 Identities=26% Similarity=0.355 Sum_probs=182.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+.....+.
T Consensus 11 ~~l~i~~l~~~~~-----~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~---G~i~~~g~~~~~~~~~ 82 (257)
T PRK11247 11 TPLLLNAVSKRYG-----ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSA---GELLAGTAPLAEARED 82 (257)
T ss_pred CcEEEEEEEEEEC-----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEHHHhhCc
Confidence 3589999999984 3469999999999999999999999999999999999999875 9999999875433457
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~ 263 (641)
++|++|++.+++.+||+||+.+... . ..++++.++++.+||.+..++.+ ..|||||||||+|||+|+
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~----~---~~~~~~~~~l~~~gl~~~~~~~~------~~LSgGqkqrl~laraL~ 149 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLK----G---QWRDAALQALAAVGLADRANEWP------AALSGGQKQRVALARALI 149 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhccc----c---hHHHHHHHHHHHcCChhHhcCCh------hhCCHHHHHHHHHHHHHh
Confidence 9999999999998999999987421 1 12456789999999988777754 499999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 264 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++.++||++++|++|++++.|+.+
T Consensus 150 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 150 HRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999999999975 5899999888874 778899999999999999888653
No 96
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2.1e-42 Score=354.88 Aligned_cols=216 Identities=25% Similarity=0.338 Sum_probs=184.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++||++.|+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+...
T Consensus 1 i~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 72 (252)
T TIGR03005 1 VRFSDVTKRFG-----ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDE---GQIQVEGEQLYHMPGRNG 72 (252)
T ss_pred CEEEEEEEEeC-----CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccccccc
Confidence 46899999984 2469999999999999999999999999999999999998875 999999986521
Q ss_pred ------------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCC
Q 006548 180 ------------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247 (641)
Q Consensus 180 ------------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~ 247 (641)
..+.++|++|++.+++.+||.||+.++.............+.++++++.+|+.+..++.+ ..
T Consensus 73 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~ 146 (252)
T TIGR03005 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMP------AQ 146 (252)
T ss_pred cccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcCh------hh
Confidence 134699999999999999999999875322111111123456889999999988877754 59
Q ss_pred CCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 248 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|+++|++ .++..+||++++|++|++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i 225 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GFAREFADRVCFFDKGRI 225 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999865 89999998887 478889999999999999
Q ss_pred EEEeChhHHH
Q 006548 327 LFFGETLACL 336 (641)
Q Consensus 327 v~~G~~~~~~ 336 (641)
++.|+.+++.
T Consensus 226 ~~~g~~~~~~ 235 (252)
T TIGR03005 226 VEQGKPDEIF 235 (252)
T ss_pred EEeCCHHHHh
Confidence 9999887653
No 97
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.3e-42 Score=347.08 Aligned_cols=206 Identities=27% Similarity=0.342 Sum_probs=176.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03262 1 IEIKNLHKSFG-----DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDS---GTIIIDGLKLTDDKKNIN 72 (213)
T ss_pred CEEEEEEEEEC-----CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCccchhHH
Confidence 36899999984 2469999999999999999999999999999999999998875 999999987531
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
..+.++|++|++.+++.+|++||+.+...........+..++++++++.+|+.+..++.+ ++||||||||++|
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~l 146 (213)
T cd03262 73 ELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP------AQLSGGQQQRVAI 146 (213)
T ss_pred HHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc------cccCHHHHHHHHH
Confidence 124699999999999999999999876431111111123456889999999988877754 4999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++ +++.++||++++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999987789999988887 578899999999999974
No 98
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=3e-42 Score=350.30 Aligned_cols=215 Identities=26% Similarity=0.381 Sum_probs=183.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 181 (641)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+... ..
T Consensus 2 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 2 LEVAGLSFAYG-----ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQE---GQISVAGHDLRRAPRAAL 73 (236)
T ss_pred EEEEeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCEEcccCChhhh
Confidence 67899999884 3469999999999999999999999999999999999999875 999999986432 12
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++|++.+++.+|++||+.+....+. .......+.++++++.+||.+..++.+ ..||||||||++||||
T Consensus 74 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G~~qrl~lara 146 (236)
T TIGR03864 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALHG-LSRAEARERIAALLARLGLAERADDKV------RELNGGHRRRVEIARA 146 (236)
T ss_pred hhEEEeCCCCCCcccCcHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCChhhhcCCh------hhCCHHHHHHHHHHHH
Confidence 469999999988889999999987654321 111123456789999999988777755 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|+.+|++|||||||+|||+.++..+.+.|+++++ +|.|+|+++|++. ++. .||++++|++|+++..|+++++.+
T Consensus 147 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHHHHH
Confidence 9999999999999999999999999999999985 5899999999875 565 499999999999999998876654
No 99
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-42 Score=352.05 Aligned_cols=214 Identities=19% Similarity=0.288 Sum_probs=183.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 76 (237)
T PRK11614 5 MLSFDKVSAHYG-----KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATS---GRIVFDGKDITDWQTAK 76 (237)
T ss_pred EEEEEeEEEeeC-----CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---ceEEECCEecCCCCHHH
Confidence 589999999884 3569999999999999999999999999999999999999875 999999987532
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHc-CCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM-SLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
..+.++|++|+..+++.+||.||+.++.... . .....+.++++++.+ ++.+..++. +..||||||||++
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~-~~~~~~~~~~~l~~~~~l~~~~~~~------~~~LS~G~~qrl~ 147 (237)
T PRK11614 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFA--E-RDQFQERIKWVYELFPRLHERRIQR------AGTMSGGEQQMLA 147 (237)
T ss_pred HHHhCEEEeccCcccCCCCcHHHHHHHhhhcc--C-hhHHHHHHHHHHHHHHHHHHHHhCc------hhhCCHHHHHHHH
Confidence 1246999999999999999999998754221 1 112334567778887 476666554 4599999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 148 la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 148 IGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA-NQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred HHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 99999999999999999999999999999999999987799999988887 4788999999999999999999988764
No 100
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-42 Score=360.06 Aligned_cols=264 Identities=23% Similarity=0.303 Sum_probs=219.3
Q ss_pred EEEeCccccccccCCCCcccccccCCCCCCCCCCcchhhhhccCCceEEEEeEEEEEecccc------cccceeeceeeE
Q 006548 59 RVEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR------YSDKVVKSSNGY 132 (641)
Q Consensus 59 ~v~e~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~------~~~~iL~~vs~~ 132 (641)
.++|.|.+...++.|.||||+.+.++.+...+.+... -.+..++.+|+.+.|+.++. ...+++++||++
T Consensus 235 ~ivE~~~t~~lF~~PqHpYTr~Ll~aeP~g~~~p~~~-----~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~ 309 (534)
T COG4172 235 EIVETGTTETLFAAPQHPYTRKLLAAEPSGDPPPLPE-----DAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLT 309 (534)
T ss_pred EEeecCcHHHHhhCCCChHHHHHHhcCCCCCCCCCCC-----CCCceEEecceEEEEecCCccccccchheEEeccceeE
Confidence 3688899999999999999999977533222221111 12457899999999875531 235799999999
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--------CCceEEEEcCCC--ccCCCCCHHHH
Q 006548 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--------PYGSYGFVERET--TLIGSLTVREY 202 (641)
Q Consensus 133 i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~--------~~~~~~yv~Q~~--~l~~~lTV~E~ 202 (641)
+++||.++|+|+||||||||-.+|.+++++. |+|.++|+++.. .++++-.|+||+ .|.|.+||.+.
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~----G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qI 385 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQ----GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQI 385 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcC----ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHH
Confidence 9999999999999999999999999999874 999999987531 134577888886 68999999999
Q ss_pred HHHHHHhcCCCc-cchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHH
Q 006548 203 LYYSALLQLPGF-FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281 (641)
Q Consensus 203 l~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~ 281 (641)
+..+...+-+.. ..++++++.++|+++||+.... +.||+++|||||||++||||++.+|++++||||||+||-.
T Consensus 386 I~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r-----~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~S 460 (534)
T COG4172 386 IEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR-----NRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRS 460 (534)
T ss_pred hhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh-----hcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHH
Confidence 999887765432 2347889999999999975332 3478899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 282 SALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 282 ~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
-+.+|+++|++|.+ .|.+-++++|+. ..+..+||+|+||++|+||+.|+++++++
T Consensus 461 VQaQvv~LLr~LQ~k~~LsYLFISHDL-~VvrAl~~~viVm~~GkiVE~G~~~~if~ 516 (534)
T COG4172 461 VQAQVLDLLRDLQQKHGLSYLFISHDL-AVVRALCHRVIVMRDGKIVEQGPTEAVFA 516 (534)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHHhhceEEEEeCCEEeeeCCHHHHhc
Confidence 99999999999985 599999977765 68999999999999999999999998865
No 101
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=7.9e-43 Score=347.02 Aligned_cols=201 Identities=21% Similarity=0.327 Sum_probs=172.1
Q ss_pred EEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCceEE
Q 006548 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYG 185 (641)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~--~~~~~~ 185 (641)
++|+++.|.+ .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.++|.+... ..+.++
T Consensus 2 ~~~l~~~~~~----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~i~ 74 (205)
T cd03226 2 IENISFSYKK----GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESS---GSILLNGKPIKAKERRKSIG 74 (205)
T ss_pred cccEEEEeCC----cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEhhhHHhhcceE
Confidence 6788988842 1569999999999999999999999999999999999999875 999999987522 234699
Q ss_pred EEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHh
Q 006548 186 FVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (641)
Q Consensus 186 yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~ 264 (641)
|++|++. .+..+||+||+.+..... . ...++++++++.+||.+..++.+ ..||||||||++|||||+.
T Consensus 75 ~~~q~~~~~~~~~tv~e~l~~~~~~~--~---~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~laral~~ 143 (205)
T cd03226 75 YVMQDVDYQLFTDSVREELLLGLKEL--D---AGNEQAETVLKDLDLYALKERHP------LSLSGGQKQRLAIAAALLS 143 (205)
T ss_pred EEecChhhhhhhccHHHHHhhhhhhc--C---ccHHHHHHHHHHcCCchhcCCCc------hhCCHHHHHHHHHHHHHHh
Confidence 9999974 334679999998754321 1 12356889999999988877754 4999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 006548 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (641)
Q Consensus 265 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (641)
+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++ +++.++||++++|++|+++
T Consensus 144 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 144 GKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999999987799999998887 4788899999999999975
No 102
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-42 Score=348.76 Aligned_cols=215 Identities=24% Similarity=0.268 Sum_probs=181.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++||++.|+.+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++....
T Consensus 5 ~l~~~~l~~~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 5 LLQCDNLCKRYQEGS-VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS---GDVIFNGQPMSKLSSAA 80 (233)
T ss_pred eEEEEeEEEEcCCCC-cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcCcCCHHH
Confidence 589999999985311 12469999999999999999999999999999999999998875 9999999875321
Q ss_pred -----CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
.+.++|++|+..+++.+||+||+.+...... ....+.+++++++++.+||.+..++.+ ..||||||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgG~~qr 153 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGK-KKPAEINSRALEMLAAVGLEHRANHRP------SELSGGERQR 153 (233)
T ss_pred HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCchhhhCCh------hhCCHHHHHH
Confidence 1469999999999999999999988654321 111123457889999999988777654 4999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||+++|++. ++.. +|++++|++|+++..|+.
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEEEECCEEEEEecc
Confidence 9999999999999999999999999999999999999975 5899999999874 5655 579999999999988763
No 103
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-42 Score=354.78 Aligned_cols=217 Identities=22% Similarity=0.291 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+....
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 76 (255)
T PRK11300 5 LLSVSGLMMRFG-----GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTG---GTILLRGQHIEGLPGHQ 76 (255)
T ss_pred eEEEeeEEEEEC-----CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCc---ceEEECCEECCCCCHHH
Confidence 589999999884 3469999999999999999999999999999999999999875 9999999875321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcC-----------CC---ccchHHHHHHHHHHHcCCchHHhhhhcCCCC
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQL-----------PG---FFCQRKNVVEDAIHAMSLSDYANKLIGGHCY 244 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-----------~~---~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~ 244 (641)
...++|++|++.+++.+||+||+.++..... +. ...+..+.++++++.+||.+..++.+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 151 (255)
T PRK11300 77 IARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA----- 151 (255)
T ss_pred HHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh-----
Confidence 2358999999999999999999988643110 00 00012346788899999988777755
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 245 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
+.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++
T Consensus 152 -~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 152 -GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVNQ 229 (255)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 499999999999999999999999999999999999999999999999875 89999988887 478899999999999
Q ss_pred CeEEEEeChhHHH
Q 006548 324 GNTLFFGETLACL 336 (641)
Q Consensus 324 G~iv~~G~~~~~~ 336 (641)
|++++.|+++++.
T Consensus 230 g~i~~~~~~~~~~ 242 (255)
T PRK11300 230 GTPLANGTPEEIR 242 (255)
T ss_pred CeEEecCCHHHHh
Confidence 9999999987653
No 104
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-42 Score=346.08 Aligned_cols=207 Identities=29% Similarity=0.420 Sum_probs=177.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----C
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----Y 181 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----~ 181 (641)
++++|+++.+. .+.+|+|+|+++++| +++|+||||||||||+++|+|+++|++ |+|.++|.+.... .
T Consensus 1 i~~~~~~~~~~-----~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 71 (211)
T cd03264 1 LQLENLTKRYG-----KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSS---GTIRIDGQDVLKQPQKLR 71 (211)
T ss_pred CEEEEEEEEEC-----CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCCccccchHHHH
Confidence 46899999884 246999999999999 999999999999999999999999875 9999999764321 3
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++|++.+++.+||+||+.+....... ...+..++++++++.+||.+..++.+ ..|||||||||+||||
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~la~a 144 (211)
T cd03264 72 RRIGYLPQEFGVYPNFTVREFLDYIAWLKGI-PSKEVKARVDEVLELVNLGDRAKKKI------GSLSGGMRRRVGIAQA 144 (211)
T ss_pred hheEEecCCCcccccCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHCCCHHHHhCch------hhCCHHHHHHHHHHHH
Confidence 5689999999999999999999876543311 11123456889999999988877755 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|+++|++ +++.++||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999986 58999988887 4788899999999999998765
No 105
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=3.1e-42 Score=347.84 Aligned_cols=214 Identities=27% Similarity=0.304 Sum_probs=176.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++||++.|.++. ....+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|++...
T Consensus 2 l~~~~v~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 2 LEVKNLSVSFPTGG-GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTS---GSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred eEEEeeeEeccCCC-cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEccccchhhH
Confidence 67899999984311 11369999999999999999999999999999999999998875 999999987532
Q ss_pred --CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHH-HHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHHH
Q 006548 180 --PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNV-VEDAIHAMSLS-DYANKLIGGHCYMKGLPCGER 253 (641)
Q Consensus 180 --~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGer 253 (641)
.++.++|++|++ .+++.+||+||+.+..............+. ++++++.+++. +..++.+ ..||||||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LS~G~~ 151 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYP------HELSGGQR 151 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCc------hhcCHHHH
Confidence 124699999998 567789999999876543221111111122 35889999995 5666644 49999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|+++..|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999999999866 89999998887 4788899999999999998654
No 106
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.3e-42 Score=351.12 Aligned_cols=216 Identities=23% Similarity=0.339 Sum_probs=184.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.++ .+++|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 ~i~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 73 (242)
T TIGR03411 2 ILYLEGLSVSFD-----GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDE---GSVLFGGTDLTGLPEHQ 73 (242)
T ss_pred eEEEEeeEEEcC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEECCeecCCCCHHH
Confidence 478999999984 2469999999999999999999999999999999999998875 999999986532
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-------CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-------GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGG 251 (641)
..+.++|++|++.+++.+||+||+.+....... ......+++++++++.+|+.+..++.+ +.||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G 147 (242)
T TIGR03411 74 IARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA------GLLSHG 147 (242)
T ss_pred HHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh------hhCCHH
Confidence 123599999999999999999999886432100 001123456889999999988777655 499999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|+++..|+
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~~~ 225 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDM-EFVRSIADKVTVLHQGSVLAEGS 225 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCH-HHHHHhCCEEEEEECCeEEeeCC
Confidence 99999999999999999999999999999999999999999976 68999988887 47889999999999999999998
Q ss_pred hhHHH
Q 006548 332 TLACL 336 (641)
Q Consensus 332 ~~~~~ 336 (641)
++++.
T Consensus 226 ~~~~~ 230 (242)
T TIGR03411 226 LDQVQ 230 (242)
T ss_pred HHHHh
Confidence 77653
No 107
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-42 Score=350.93 Aligned_cols=223 Identities=21% Similarity=0.259 Sum_probs=181.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~-- 179 (641)
+.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +....+|+|.++|++...
T Consensus 5 ~~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 5 PKMEARGLSFFYG-----DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred cEEEEeeeEEEEC-----CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 4689999999984 2469999999999999999999999999999999999864 100135999999987531
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHH
Q 006548 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (641)
.++.++|++|++.+++ .||+||+.+....+.........++++++++.+++.+...... +..++.|||||||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LSgGq~q 156 (253)
T PRK14242 80 VDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRL--HESALGLSGGQQQ 156 (253)
T ss_pred cCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHh--hCCcccCCHHHHH
Confidence 1246999999998887 5999999886543211111123456888999999864322222 2355699999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.++||++++|++|+++..|++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNM-QQAARVSDVTAFFYMGKLIEVGPTEQ 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999954 78999988887 47889999999999999999998876
Q ss_pred HH
Q 006548 335 CL 336 (641)
Q Consensus 335 ~~ 336 (641)
+.
T Consensus 235 ~~ 236 (253)
T PRK14242 235 IF 236 (253)
T ss_pred HH
Confidence 53
No 108
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-42 Score=356.74 Aligned_cols=221 Identities=22% Similarity=0.269 Sum_probs=183.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|++.+...+++|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ---GSVRVDDTLITSTSKNK 78 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccccccc
Confidence 478999999985321112469999999999999999999999999999999999999875 999999987532
Q ss_pred ----CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHH
Q 006548 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGe 252 (641)
.++.++|++|++ .+++ .||+||+.+...... ....+..++++++++.+||. +..++.+ ..|||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgG~ 150 (280)
T PRK13649 79 DIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFG-VSQEEAEALAREKLALVGISESLFEKNP------FELSGGQ 150 (280)
T ss_pred CHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCChhhhhCCc------ccCCHHH
Confidence 124689999996 4554 699999987643221 11112345678899999997 4566644 4999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|+++..|++
T Consensus 151 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 229 (280)
T PRK13649 151 MRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM-DDVANYADFVYVLEKGKLVLSGKP 229 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999987789999998887 478889999999999999999998
Q ss_pred hHHHH
Q 006548 333 LACLQ 337 (641)
Q Consensus 333 ~~~~~ 337 (641)
+++.+
T Consensus 230 ~~~~~ 234 (280)
T PRK13649 230 KDIFQ 234 (280)
T ss_pred HHHhc
Confidence 87643
No 109
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=4.1e-42 Score=346.06 Aligned_cols=207 Identities=24% Similarity=0.321 Sum_probs=177.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 74 (222)
T PRK10908 2 IRFEHVSKAYLG----GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSA---GKIWFSGHDITRLKNREV 74 (222)
T ss_pred EEEEeeEEEecC----CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccCChhHH
Confidence 689999999841 2469999999999999999999999999999999999998875 999999986532
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
..+.++|++|++.+++.+|++||+.+...... ....+..++++++++.+++.+..++.+ ..||||||||++
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~ 147 (222)
T PRK10908 75 PFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAG-ASGDDIRRRVSAALDKVGLLDKAKNFP------IQLSGGEQQRVG 147 (222)
T ss_pred HHHHhheEEEecCccccccccHHHHHHhHHHhcC-CCHHHHHHHHHHHHHHcCChhhhhCCc------hhCCHHHHHHHH
Confidence 12468999999988889999999988654321 111123456788999999988777654 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (641)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++ +++..+||++++|++|+++
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 148 IARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI-GLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEc
Confidence 99999999999999999999999999999999999987789999988887 4788899999999999985
No 110
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-42 Score=357.17 Aligned_cols=218 Identities=23% Similarity=0.329 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.|.+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~---G~i~i~g~~~~~~~~~~ 77 (283)
T PRK13636 5 ILKVEELNYNYSD----GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS---GRILFDGKPIDYSRKGL 77 (283)
T ss_pred eEEEEeEEEEeCC----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---cEEEECCEECCCCcchH
Confidence 6899999999842 3469999999999999999999999999999999999999875 999999987531
Q ss_pred --CCceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 180 --PYGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 180 --~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
.++.++|++|++. .+...||+||+.+...... .......++++++++.+||.+..++.+ +.||||||||+
T Consensus 78 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LS~G~~qrl 150 (283)
T PRK13636 78 MKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLK-LPEDEVRKRVDNALKRTGIEHLKDKPT------HCLSFGQKKRV 150 (283)
T ss_pred HHHHhhEEEEecCcchhhccccHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHCCChhhhhCCc------ccCCHHHHHHH
Confidence 1246999999863 2345799999987643221 111123467899999999998887754 59999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++|||+++|++|++++.|++++.
T Consensus 151 ~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~ 229 (283)
T PRK13636 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKEV 229 (283)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999865 89999988887 468889999999999999999999887
Q ss_pred HH
Q 006548 336 LQ 337 (641)
Q Consensus 336 ~~ 337 (641)
..
T Consensus 230 ~~ 231 (283)
T PRK13636 230 FA 231 (283)
T ss_pred hc
Confidence 64
No 111
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.1e-42 Score=347.89 Aligned_cols=207 Identities=29% Similarity=0.425 Sum_probs=172.8
Q ss_pred EEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEE
Q 006548 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFV 187 (641)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv 187 (641)
++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+....++.++|+
T Consensus 2 ~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~i~~v 73 (213)
T cd03235 2 VEDLTVSYG-----GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTS---GSIRVFGKPLEKERKRIGYV 73 (213)
T ss_pred cccceeEEC-----CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECCccHHHHHhheEEe
Confidence 578888884 2469999999999999999999999999999999999998875 99999997643223569999
Q ss_pred cCCCccC--CCCCHHHHHHHHHHhcCC---CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 188 ERETTLI--GSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 188 ~Q~~~l~--~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
+|++.+. ..+||+||+.+....... .......++++++++.+++.+..++.+ ..||||||||++|||||
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrv~la~al 147 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI------GELSGGQQQRVLLARAL 147 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc------ccCCHHHHHHHHHHHHH
Confidence 9998763 347999999875432110 011123456889999999988777754 49999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++ +++.++||++++|++| +++.|
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999999999987889999988887 4788999999999876 55544
No 112
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=5e-42 Score=354.73 Aligned_cols=222 Identities=22% Similarity=0.279 Sum_probs=185.2
Q ss_pred eEEEEeEEEEEeccc----ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 006548 105 SVVWKDLTVTIKGKR----RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~- 179 (641)
.++++||++.|.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQ---GTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEcccc
Confidence 478999999985310 113579999999999999999999999999999999999999875 999999987532
Q ss_pred -------CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCC
Q 006548 180 -------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (641)
Q Consensus 180 -------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LS 249 (641)
..+.++|++|++ .+++.+||+||+.+.............+++++++++.+||. +..++.+ .+||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~------~~LS 152 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLP------RQLS 152 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCCh------hhCC
Confidence 124699999996 46778999999977543211111112345688999999996 6666644 4999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 006548 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (641)
Q Consensus 250 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (641)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +.+.++||++++|++|++++
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999865 89999988887 47888999999999999999
Q ss_pred EeChhHHH
Q 006548 329 FGETLACL 336 (641)
Q Consensus 329 ~G~~~~~~ 336 (641)
.|+++++.
T Consensus 232 ~g~~~~~~ 239 (265)
T TIGR02769 232 ECDVAQLL 239 (265)
T ss_pred ECCHHHHc
Confidence 99988764
No 113
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=6.7e-42 Score=344.71 Aligned_cols=208 Identities=24% Similarity=0.342 Sum_probs=182.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-CceE
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGSY 184 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~-~~~~ 184 (641)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+.... .+.+
T Consensus 1 l~l~~v~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~~~~~~~~~~~~~ 72 (223)
T TIGR03740 1 LETKNLSKRFG-----KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTS---GEIIFDGHPWTRKDLHKI 72 (223)
T ss_pred CEEEeEEEEEC-----CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEeccccccccE
Confidence 46899999884 3469999999999999999999999999999999999998875 9999999865322 2469
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHh
Q 006548 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~ 264 (641)
+|++|++.+++.+|++||+.+...... ....++.++++.+|+.+..++.++ .||||||||++|||||+.
T Consensus 73 ~~~~q~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~~rv~laral~~ 141 (223)
T TIGR03740 73 GSLIESPPLYENLTARENLKVHTTLLG-----LPDSRIDEVLNIVDLTNTGKKKAK------QFSLGMKQRLGIAIALLN 141 (223)
T ss_pred EEEcCCCCccccCCHHHHHHHHHHHcC-----CCHHHHHHHHHHcCCcHHHhhhHh------hCCHHHHHHHHHHHHHhc
Confidence 999999999999999999987654321 123467889999999988887654 999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 265 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++. ++.++||++++|++|+++..|++.
T Consensus 142 ~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 142 HPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred CCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChh
Confidence 99999999999999999999999999999877899999999874 788999999999999999999865
No 114
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=5.1e-42 Score=346.40 Aligned_cols=216 Identities=37% Similarity=0.586 Sum_probs=182.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC---CCCCceeEEEECCEeCCC--
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP---HSARMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~---~~~~~~G~I~~~G~~~~~-- 179 (641)
.+.++|+++++++.+ ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++ |+ +|+|.++|.+...
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNWN-KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQ 78 (226)
T ss_pred cceeecceeeeecCc-cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHH
Confidence 367999999986421 13679999999999999999999999999999999999998 65 4999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccc--hHHHHHHH-HHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVVED-AIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~--~~~~~v~~-~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
.++.++|++|++.+++.+||+||+.+......+.... ....++++ .++.+++.+..++.+ +.|||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl 152 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV------KGISGGERRRV 152 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc------cCcCHHHHHHH
Confidence 2357999999999999999999999875543221111 12234555 889999987776644 59999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++.+++.++||++++|++|++++.|
T Consensus 153 ~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 153 SIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998778999999999755789999999999999998765
No 115
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.1e-43 Score=352.53 Aligned_cols=235 Identities=25% Similarity=0.337 Sum_probs=201.8
Q ss_pred eEEEEeEEEEEeccc-------------------ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 006548 105 SVVWKDLTVTIKGKR-------------------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR 165 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~-------------------~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~ 165 (641)
.++++|+.+-+..+. .+...-++|+|+.++.||+..|||-||||||||+++|.++.+|+.
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~- 82 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR- 82 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC-
Confidence 578999988774320 122346899999999999999999999999999999999999976
Q ss_pred ceeEEEECCEeCC---------CCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHh
Q 006548 166 MYGEVFVNGAKSE---------MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYAN 236 (641)
Q Consensus 166 ~~G~I~~~G~~~~---------~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 236 (641)
|+|+++|.++. .+++.+++|+|...|+|+.||.||..|+..++.- ...++++++.++|+.+||+++.+
T Consensus 83 --G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv-~~~er~~~a~~~l~~VgL~~~~~ 159 (386)
T COG4175 83 --GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGV-PKAEREERALEALELVGLEGYAD 159 (386)
T ss_pred --ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCC-CHHHHHHHHHHHHHHcCchhhhh
Confidence 99999998742 1345799999999999999999999998766532 12347788999999999999998
Q ss_pred hhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcC
Q 006548 237 KLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLF 315 (641)
Q Consensus 237 ~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~ 315 (641)
+ +|++|||||||||.|||||+.+|+||+||||+|+|||--+.++.+.|.+|.++ ++|||+++|+. +|+.++.
T Consensus 160 ~------yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL-dEAlriG 232 (386)
T COG4175 160 K------YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDL-DEALRIG 232 (386)
T ss_pred c------CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHHhcc
Confidence 8 45699999999999999999999999999999999999999999999999855 89999987776 6899999
Q ss_pred CEEEEEeCCeEEEEeChhHHHHHhhhcCCCCCCCCCchHHHHHHHhcc
Q 006548 316 DRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTD 363 (641)
Q Consensus 316 D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~d~~l~~~~~~ 363 (641)
|||.+|++|++|..|+|+|++. ||++.|+.....+
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~-------------~PAndYV~~Fv~~ 267 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILL-------------NPANDYVRDFVRN 267 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHc-------------CccHHHHHHHHhc
Confidence 9999999999999999999864 5677676655433
No 116
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-42 Score=352.09 Aligned_cols=216 Identities=26% Similarity=0.342 Sum_probs=184.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|+ ++.+|+|+|+++++|++++|+||||||||||+++|+|+.+|++ |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~---G~i~~~g~~~~~~~~~~ 73 (258)
T PRK13548 2 MLEARNLSVRLG-----GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDS---GEVRLNGRPLADWSPAE 73 (258)
T ss_pred eEEEEeEEEEeC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEEcccCCHHH
Confidence 478999999984 3469999999999999999999999999999999999998875 999999986431
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
..+.++|++|++.+++.+||+||+.+...... ......+++++++++.+||.+..++.+ ..|||||||||+||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGe~qrv~la 146 (258)
T PRK13548 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG-LSRAEDDALVAAALAQVDLAHLAGRDY------PQLSGGEQQRVQLA 146 (258)
T ss_pred hhhheEEEccCCcCCCCCCHHHHHHhhhcccC-CCcHHHHHHHHHHHHHcCCHhHhcCCc------ccCCHHHHHHHHHH
Confidence 12468999999988888999999987542211 111123456889999999988777755 49999999999999
Q ss_pred HHHH------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 260 RELV------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 260 ~aL~------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
|||+ .+|++|||||||+|||+.++..+.+.|++++ ++|.|||+++|++ +++.++||++++|++|++++.|++
T Consensus 147 ~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~ 225 (258)
T PRK13548 147 RVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRIVLLHQGRLVADGTP 225 (258)
T ss_pred HHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEEEEEECCEEEeeCCH
Confidence 9999 5999999999999999999999999999998 6789999988887 478889999999999999999988
Q ss_pred hHHH
Q 006548 333 LACL 336 (641)
Q Consensus 333 ~~~~ 336 (641)
+++.
T Consensus 226 ~~~~ 229 (258)
T PRK13548 226 AEVL 229 (258)
T ss_pred HHHh
Confidence 7654
No 117
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=6.4e-42 Score=353.28 Aligned_cols=219 Identities=26% Similarity=0.407 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++||++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+...+|+|.++|.+....
T Consensus 4 ~l~~~nl~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~ 78 (262)
T PRK09984 4 IIRVEKLAKTFN-----QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA 78 (262)
T ss_pred EEEEeeEEEEeC-----CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccc
Confidence 589999999984 35699999999999999999999999999999999999987532459999999864210
Q ss_pred ------CceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-------CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCC
Q 006548 181 ------YGSYGFVERETTLIGSLTVREYLYYSALLQLP-------GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247 (641)
Q Consensus 181 ------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~ 247 (641)
.+.++|++|++.+++.+||.||+.+......+ ....+.+++++++++.+|+.+..++.+ ..
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~ 152 (262)
T PRK09984 79 RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV------ST 152 (262)
T ss_pred hhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc------cc
Confidence 23589999999999999999999875321100 001123457899999999988877755 49
Q ss_pred CCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 248 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||+++|++ .++.++||++++|++|++
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~~l~~g~i 231 (262)
T PRK09984 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIVALRQGHV 231 (262)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999985 489999998887 468899999999999999
Q ss_pred EEEeChhHH
Q 006548 327 LFFGETLAC 335 (641)
Q Consensus 327 v~~G~~~~~ 335 (641)
++.|++++.
T Consensus 232 ~~~g~~~~~ 240 (262)
T PRK09984 232 FYDGSSQQF 240 (262)
T ss_pred EEeCCHHHh
Confidence 999988653
No 118
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-42 Score=354.30 Aligned_cols=215 Identities=25% Similarity=0.294 Sum_probs=183.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----- 180 (641)
++++||++.|++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 2 l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 74 (274)
T PRK13644 2 IRLENVSYSYPD----GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQK---GKVLVSGIDTGDFSKLQG 74 (274)
T ss_pred EEEEEEEEEcCC----CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEECCccccHHH
Confidence 679999999842 2459999999999999999999999999999999999999875 9999999875321
Q ss_pred -CceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 181 -YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
.+.++|++|++. .+...||.||+.+...... ....+..++++++++.+||.+..++.+ ..|||||||||+|
T Consensus 75 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G~~qrv~l 147 (274)
T PRK13644 75 IRKLVGIVFQNPETQFVGRTVEEDLAFGPENLC-LPPIEIRKRVDRALAEIGLEKYRHRSP------KTLSGGQGQCVAL 147 (274)
T ss_pred HHhheEEEEEChhhhcccchHHHHHHhhHHHcC-CCHHHHHHHHHHHHHHCCCHHHhcCCc------ccCCHHHHHHHHH
Confidence 246999999975 3566899999987653321 111123456889999999998887754 4999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++. ++ ..||++++|++|++++.|+++++.
T Consensus 148 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 148 AGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999877999999988875 56 569999999999999999988765
No 119
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=6.4e-42 Score=348.99 Aligned_cols=217 Identities=20% Similarity=0.284 Sum_probs=180.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~--~~~~~~~G~I~~~G~~~~~---- 179 (641)
++++||++.|+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+. +|+ +|+|.++|++...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 1 LKIKDLHVSVE-----DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPD 72 (243)
T ss_pred CeEeeEEEEEC-----CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHH
Confidence 46899999984 346999999999999999999999999999999999995 565 4999999987432
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC--C----ccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLP--G----FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPC 250 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~--~----~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSG 250 (641)
....++|++|++.+++.+|++|++.+....... . ...+..++++++++.+||. +..++.++ .+|||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~LS~ 147 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN-----EGFSG 147 (243)
T ss_pred HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc-----cCcCH
Confidence 123489999999999999999999876432211 0 0111245688999999997 45555432 25999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhc-CCEEEEEeCCeEEEE
Q 006548 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLFF 329 (641)
Q Consensus 251 GerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv~~ 329 (641)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++. ++... ||++++|++|++++.
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~ 226 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLDGRIVKS 226 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999999999878899999999874 67777 899999999999999
Q ss_pred eChhHHH
Q 006548 330 GETLACL 336 (641)
Q Consensus 330 G~~~~~~ 336 (641)
|+++++.
T Consensus 227 g~~~~~~ 233 (243)
T TIGR01978 227 GDVELAK 233 (243)
T ss_pred cCHHHhc
Confidence 9887543
No 120
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-42 Score=371.40 Aligned_cols=203 Identities=27% Similarity=0.361 Sum_probs=177.7
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------CceEEEEcCCCccC
Q 006548 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---------YGSYGFVERETTLI 194 (641)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---------~~~~~yv~Q~~~l~ 194 (641)
.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+.... ++.++|++|+..++
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s---G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR---GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC---CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 48999999999999999999999999999999999999875 9999999875321 24699999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCC
Q 006548 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (641)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEP 274 (641)
+.+||+||+.+....... ...+..+++.++++.+||.+..++.+ ++|||||||||+|||||+.+|++||||||
T Consensus 119 ~~~Tv~enl~~~~~~~~~-~~~~~~~~~~e~L~~~gL~~~~~~~~------~~LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 119 PHMTVLDNTAFGMELAGI-NAEERREKALDALRQVGLENYAHSYP------DELSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred CCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCChhhhcCc------ccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999999999987654311 11224567889999999998887754 59999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 275 LYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 275 tsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|+|||+.++..+.+.|+++++ .|+|||+++|+. +++.++||++++|++|+++..|+++++..
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEEEEECCEEEecCCHHHHHh
Confidence 999999999999999999975 589999988886 57889999999999999999999887643
No 121
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-42 Score=350.49 Aligned_cols=218 Identities=21% Similarity=0.268 Sum_probs=181.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~~--- 179 (641)
.++++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+|+|+|+++|.. ..+|+|.++|++...
T Consensus 7 ~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (254)
T PRK14273 7 IIETENLNLFYT-----DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF 81 (254)
T ss_pred eEEEeeeEEEeC-----CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccc
Confidence 689999999984 2469999999999999999999999999999999999998631 125999999986421
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc----hHHhhhhcCCCCCCCCCHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~~LSGG 251 (641)
.++.++|++|++.+++ +||+||+.+.............+++++++++.+++. +..++ .+++||||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~------~~~~LSgG 154 (254)
T PRK14273 82 DILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNT------NALSLSGG 154 (254)
T ss_pred cHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhC------CcccCCHH
Confidence 1346999999988884 899999988653321111112345688889999884 33344 45699999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
|||||+|||+|+.+|++|||||||+|||+.++..+++.|+++++ +.|+|+++|++ +++.++||++++|++|+++..|+
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~ 232 (254)
T PRK14273 155 QQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNM-QQAGRISDRTAFFLNGCIEEESS 232 (254)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999964 78999988887 47889999999999999999999
Q ss_pred hhHHH
Q 006548 332 TLACL 336 (641)
Q Consensus 332 ~~~~~ 336 (641)
++++.
T Consensus 233 ~~~~~ 237 (254)
T PRK14273 233 TDELF 237 (254)
T ss_pred HHHHH
Confidence 88764
No 122
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=354.51 Aligned_cols=218 Identities=22% Similarity=0.267 Sum_probs=186.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++||++.|.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|++....
T Consensus 5 ~l~~~~l~~~~~~---~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~---G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 5 IIRVEHISFRYPD---AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEA---GTITVGGMVLSEETVWD 78 (279)
T ss_pred eEEEEEEEEEeCC---CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECCEECCcCcHHH
Confidence 5899999999842 13469999999999999999999999999999999999999875 9999999875321
Q ss_pred -CceEEEEcCCC-ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 181 -YGSYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 181 -~~~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
.+.++|++|++ .+++..||.||+.+...... ....+..++++++++.+||.+..++.+ ..|||||||||+|
T Consensus 79 ~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LS~G~~qrv~l 151 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG-VPREEMVERVDQALRQVGMEDFLNREP------HRLSGGQKQRVAI 151 (279)
T ss_pred HhhheEEEEeCHHHhcccccHHHHHhhhHhhCC-CCHHHHHHHHHHHHHHcCChhhhhCCc------ccCCHHHHHHHHH
Confidence 24699999997 36667899999988654321 111223467899999999998888755 4999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|++. ++. .||++++|++|++++.|+++++..
T Consensus 152 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 152 AGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999999876 899999999875 565 599999999999999999887653
No 123
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=353.84 Aligned_cols=217 Identities=26% Similarity=0.362 Sum_probs=184.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++||++.|.+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++++. |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (275)
T PRK13639 2 LETRDLKYSYPD----GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTS---GEVLIKGEPIKYDKKSLL 74 (275)
T ss_pred EEEEEEEEEeCC----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCEECccccchHH
Confidence 689999999842 2469999999999999999999999999999999999999875 999999987531
Q ss_pred -CCceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 -PYGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 -~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
..+.++|++|++. .+...||.||+.+..... .....+..+++.++++.+||.+..++.+ ..||||||||++
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~------~~LS~Gq~qrv~ 147 (275)
T PRK13639 75 EVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL-GLSKEEVEKRVKEALKAVGMEGFENKPP------HHLSGGQKKRVA 147 (275)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCchhhcCCh------hhCCHHHHHHHH
Confidence 1246999999963 333579999998764321 1111123456889999999998887755 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++ +++.++||++++|++|++++.|+++++..
T Consensus 148 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 148 IAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999987799999988887 47888999999999999999999988753
No 124
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=5.8e-42 Score=346.67 Aligned_cols=211 Identities=20% Similarity=0.320 Sum_probs=180.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++||++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (230)
T TIGR03410 1 LEVSNLNVYYG-----QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKS---GSIRLDGEDITKLPPHER 72 (230)
T ss_pred CEEEeEEEEeC-----CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEECCCCCHHHH
Confidence 46899999884 3469999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcC-CchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-LSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
..+.++|++|+..+++.+|++||+.+....... ...+..+++++.++ +.+..++. +..||||||||++|
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~----~~~~~~~~~l~~~~~l~~~~~~~------~~~LS~G~~qrv~l 142 (230)
T TIGR03410 73 ARAGIAYVPQGREIFPRLTVEENLLTGLAALPR----RSRKIPDEIYELFPVLKEMLGRR------GGDLSGGQQQQLAI 142 (230)
T ss_pred HHhCeEEeccCCcccCCCcHHHHHHHHHHhcCc----chHHHHHHHHHHHHhHHHHhhCC------hhhCCHHHHHHHHH
Confidence 124699999999999999999999876533211 12334577788876 56666654 45999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|+++|++ +++.++||++++|++|+++..|+.+++
T Consensus 143 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 143 ARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999999999999875 89999988887 478889999999999999999998765
No 125
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-42 Score=332.03 Aligned_cols=217 Identities=26% Similarity=0.356 Sum_probs=187.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----- 180 (641)
++.+||++++. ++++|++||++++|||++||+||||||||||||.|+|.+.|++ |++.+||.+....
T Consensus 2 i~a~nls~~~~-----Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~---G~v~~~g~~l~~~~~~~l 73 (259)
T COG4559 2 IRAENLSYSLA-----GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDS---GEVTLNGVPLNSWPPEEL 73 (259)
T ss_pred eeeeeeEEEee-----cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCC---CeEeeCCcChhhCCHHHH
Confidence 67899999984 5679999999999999999999999999999999999999876 9999999875432
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
.+.-+.++|+..+-...||.|.+.++..-... ....+..+.++++|...++.+++.+.. ..|||||||||.+|
T Consensus 74 A~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y------~~LSGGEqQRVqlA 147 (259)
T COG4559 74 ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY------RTLSGGEQQRVQLA 147 (259)
T ss_pred HHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccch------hhcCchHHHHHHHH
Confidence 24568899998887778999999987542211 111234455889999999999998854 49999999999999
Q ss_pred HHHHh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 260 RELVM------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 260 ~aL~~------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
|.|++ ++++||||||||+||...+..++++.++++++|..|+++.|+.+ ....+||||++|++||++..|+|+
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLN-LAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLN-LAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccch-HHHHhhheeeeeeCCeEeecCCHH
Confidence 99986 45699999999999999999999999999999999999888875 788999999999999999999999
Q ss_pred HHHH
Q 006548 334 ACLQ 337 (641)
Q Consensus 334 ~~~~ 337 (641)
+++.
T Consensus 227 ~vlt 230 (259)
T COG4559 227 DVLT 230 (259)
T ss_pred HhcC
Confidence 9873
No 126
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-42 Score=352.05 Aligned_cols=217 Identities=22% Similarity=0.343 Sum_probs=185.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.|. ++.+|+|+|+++++||+++|+|+||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 73 (255)
T PRK11231 2 TLRTENLTVGYG-----TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQS---GTVFLGDKPISMLSSRQ 73 (255)
T ss_pred EEEEEeEEEEEC-----CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCC---cEEEECCEEhHHCCHHH
Confidence 478999999884 3469999999999999999999999999999999999998875 999999986421
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHh--c-CCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALL--Q-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~--~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
..+.++|++|+..+++.+|+.||+.++... . .........++++++++.+||.+..++.+ ..|||||||||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv 147 (255)
T PRK11231 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL------TDLSGGQRQRA 147 (255)
T ss_pred HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc------ccCCHHHHHHH
Confidence 124699999999888889999999875211 0 11111123456889999999988777754 59999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++ +++.++||++++|++|+++..|++++..
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 148 FLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 999999999999999999999999999999999999987789999988887 4788999999999999999999887653
No 127
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=350.69 Aligned_cols=218 Identities=20% Similarity=0.298 Sum_probs=181.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~~-- 179 (641)
..++++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.++.. ..+|+|.++|.+...
T Consensus 11 ~~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 85 (258)
T PRK14268 11 PQIKVENLNLWYG-----EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD 85 (258)
T ss_pred eeEEEeeeEEEeC-----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccccc
Confidence 3689999999884 3469999999999999999999999999999999999987510 125999999987421
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc----hHHhhhhcCCCCCCCCCH
Q 006548 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPC 250 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~~LSG 250 (641)
..+.++|++|++.+++ +|++||+.+...... ......+++++++++.+++. +..++ .+..|||
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LSg 157 (258)
T PRK14268 86 VDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHG-ANKKDLDGVVENALRSAALWDETSDRLKS------PALSLSG 157 (258)
T ss_pred chHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCCcchhhhhcC------ChhhCCH
Confidence 1246999999998887 899999988653321 11112345678899999984 33444 4569999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 251 GerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++ .++.++||++++|++|++++.|
T Consensus 158 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~ 235 (258)
T PRK14268 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNM-QQAARISDYTGFFLMGELIEFG 235 (258)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999965 78999988887 4788899999999999999999
Q ss_pred ChhHHH
Q 006548 331 ETLACL 336 (641)
Q Consensus 331 ~~~~~~ 336 (641)
+++++.
T Consensus 236 ~~~~~~ 241 (258)
T PRK14268 236 QTRQIF 241 (258)
T ss_pred CHHHHh
Confidence 987764
No 128
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-42 Score=355.18 Aligned_cols=215 Identities=20% Similarity=0.282 Sum_probs=182.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++||++.|. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++...
T Consensus 2 l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 2 LATSDLWFRYQ-----DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQK---GAVLWQGKPLDYSKRGLL 73 (271)
T ss_pred eEEEEEEEEcC-----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCc---cEEEECCEEcccccCCHH
Confidence 68999999984 3469999999999999999999999999999999999999875 999999987531
Q ss_pred -CCceEEEEcCCCcc-CCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 -PYGSYGFVERETTL-IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l-~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
.++.++|++|++.. +...|+.||+.+...... ....+..++++++++.+||.+..++.+ ..||||||||++
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrl~ 146 (271)
T PRK13638 74 ALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLG-VPEAEITRRVDEALTLVDAQHFRHQPI------QCLSHGQKKRVA 146 (271)
T ss_pred HHHhheEEEeeChhhccccccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHhHhcCCc------hhCCHHHHHHHH
Confidence 12469999999753 345689999987643321 111123456788999999988877654 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 147 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 147 IAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI-DLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999987789999988887 4788999999999999999999988764
No 129
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=361.93 Aligned_cols=228 Identities=20% Similarity=0.193 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-ARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~-~~~~G~I~~~G~~~~~---- 179 (641)
.++++||++.|..++ +...+|+|||+++++||+++|+|+||||||||+++|+|++++. ...+|+|.++|++...
T Consensus 3 ~L~v~~l~~~y~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSD-GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCC-CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 589999999995321 2356999999999999999999999999999999999998742 1235999999987532
Q ss_pred -----CCceEEEEcCCCc--cCCCCCHHHHHHHHHHhc-C-C---CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCC
Q 006548 180 -----PYGSYGFVERETT--LIGSLTVREYLYYSALLQ-L-P---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~-~-~---~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~ 247 (641)
..+.++||+|++. ++|.+||.+++.+..... . . ....+.++++.++++.+||.+..+.. +.++++
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~---~~~p~~ 158 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAM---RSFPYE 158 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHH---hCCchh
Confidence 1236999999975 678899999997643211 1 0 01112345788999999997533221 236679
Q ss_pred CCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 248 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |.|+|+++|+. ..+.++||+|++|++|++
T Consensus 159 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v~~~~dri~vm~~G~i 237 (330)
T PRK15093 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QMLSQWADKINVLYCGQT 237 (330)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 89999988876 578899999999999999
Q ss_pred EEEeChhHHHH
Q 006548 327 LFFGETLACLQ 337 (641)
Q Consensus 327 v~~G~~~~~~~ 337 (641)
++.|+++++.+
T Consensus 238 ve~g~~~~i~~ 248 (330)
T PRK15093 238 VETAPSKELVT 248 (330)
T ss_pred EEECCHHHHHh
Confidence 99999887653
No 130
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=8.3e-42 Score=343.36 Aligned_cols=209 Identities=24% Similarity=0.334 Sum_probs=176.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P---- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-~---- 180 (641)
++++||++.|+++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|.+... .
T Consensus 2 l~~~~v~~~~~~~~-~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 2 LKCENLGKRYQEGK-LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTS---GEVLFNGQSLSKLSSNER 77 (221)
T ss_pred EEEEeeeEEccCCC-cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEhhhcCHhHH
Confidence 67899999985321 12469999999999999999999999999999999999999875 999999987531 1
Q ss_pred ----CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 181 ----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
.+.++|++|++.+++.+||+||+.+....+.. ...+..+++.++++.+|+.+..++.+ ..|||||||||
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv 150 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKK-SVKEAKERAYEMLEKVGLEHRINHRP------SELSGGERQRV 150 (221)
T ss_pred HHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHHHHHH
Confidence 14699999999999999999999886543211 11123456789999999988777754 49999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (641)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++. .+|++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~-~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LAK-KLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHh-hcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999999864 899999998874 554 58999999999985
No 131
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=349.53 Aligned_cols=223 Identities=25% Similarity=0.298 Sum_probs=183.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCC---C
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSE---M 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~---~ 179 (641)
.++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. ..+|+|.++|++.. .
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (253)
T PRK14267 4 AIETVNLRVYYG-----SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78 (253)
T ss_pred eEEEEeEEEEeC-----CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 589999999984 2469999999999999999999999999999999999988730 13599999998753 1
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (641)
.++.++|++|++.+++.+||.||+.+....+.. .......++++++++.+++.+...... +..+..|||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~q 156 (253)
T PRK14267 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRL--NDYPSNLSGGQRQ 156 (253)
T ss_pred ChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhh--ccChhhCCHHHHH
Confidence 124699999999999999999999876543210 011123456788999999853211111 2355699999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|+++|++ .++.++||++++|++|++++.|++++
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999975 68999988887 47889999999999999999999877
Q ss_pred HH
Q 006548 335 CL 336 (641)
Q Consensus 335 ~~ 336 (641)
+.
T Consensus 235 ~~ 236 (253)
T PRK14267 235 VF 236 (253)
T ss_pred HH
Confidence 64
No 132
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.8e-42 Score=342.68 Aligned_cols=204 Identities=27% Similarity=0.356 Sum_probs=171.9
Q ss_pred EEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----Cc
Q 006548 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YG 182 (641)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~ 182 (641)
++|+++.|.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+.... .+
T Consensus 2 ~~~l~~~~~~~---~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~~~ 75 (211)
T cd03225 2 LKNLSFSYPDG---ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTS---GEVLVDGKDLTKLSLKELRR 75 (211)
T ss_pred ceeEEEecCCC---CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEcccCCHHHHHh
Confidence 67899888421 1569999999999999999999999999999999999998875 9999999865321 24
Q ss_pred eEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 183 SYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 183 ~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
.++|++|++. .++.+||+||+.+...... .......++++++++.++|.+..++.+ ..|||||||||+||||
T Consensus 76 ~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrv~lara 148 (211)
T cd03225 76 KVGLVFQNPDDQFFGPTVEEEVAFGLENLG-LPEEEIEERVEEALELVGLEGLRDRSP------FTLSGGQKQRVAIAGV 148 (211)
T ss_pred hceEEecChhhhcCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCcHhhhcCCc------ccCCHHHHHHHHHHHH
Confidence 6899999974 3567899999987643221 111123456888999999988777654 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++..+||++++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999987799999988887 47888999999999985
No 133
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=7.3e-40 Score=403.88 Aligned_cols=222 Identities=25% Similarity=0.310 Sum_probs=194.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 180 (641)
..++++||++.|++ +++.+|+|+|+.+.+||+++|+||||||||||+|+|+|+.+|++ |+|.++|.++...
T Consensus 927 ~~L~I~nLsK~y~~---~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pts---G~I~i~G~dI~~~~~~ 1000 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP---SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTS---GTVLVGGKDIETNLDA 1000 (2272)
T ss_pred ceEEEEeEEEEecC---CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCc---eEEEECCEECcchHHH
Confidence 36899999999942 23579999999999999999999999999999999999999875 9999999875321
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
++.+||++|++.+++.+||+||+.+.++++.. ...+.+++++++++.+||.+..++.++ +|||||||||+||
T Consensus 1001 ~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~-~~~~~~~~v~~lL~~vgL~~~~~~~~~------~LSGGqKQRLsLA 1073 (2272)
T TIGR01257 1001 VRQSLGMCPQHNILFHHLTVAEHILFYAQLKGR-SWEEAQLEMEAMLEDTGLHHKRNEEAQ------DLSGGMQRKLSVA 1073 (2272)
T ss_pred HhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchhhcCChh------hCCHHHHHHHHHH
Confidence 35699999999999999999999987765421 112345678999999999988887554 9999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHh
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (641)
+||+.+|+||||||||+|||+.+++.++++|++++ +|+|||+++|++ +++..+||||++|++|+++..|++.++.+.|
T Consensus 1074 rALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 99999999999999999999999999999999995 589999988887 5888999999999999999999999887655
Q ss_pred h
Q 006548 340 S 340 (641)
Q Consensus 340 ~ 340 (641)
.
T Consensus 1152 g 1152 (2272)
T TIGR01257 1152 G 1152 (2272)
T ss_pred C
Confidence 3
No 134
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-42 Score=353.09 Aligned_cols=218 Identities=22% Similarity=0.326 Sum_probs=185.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..+.++||++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 10 ~~l~i~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~ 81 (265)
T PRK10575 10 TTFALRNVSFRVP-----GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSE---GEILLDAQPLESWSSK 81 (265)
T ss_pred ceEEEeeEEEEEC-----CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECCEehhhCCHH
Confidence 3589999999984 2469999999999999999999999999999999999998875 999999986421
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC---CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
..+.++|++|+..+++.+||.||+.+....... ......+++++++++.+++.+..++.+ ..||||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qr 155 (265)
T PRK10575 82 AFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV------DSLSGGERQR 155 (265)
T ss_pred HHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc------ccCCHHHHHH
Confidence 124699999998888899999999875321110 001123456889999999988777754 4999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|+++..|++++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHH
Confidence 99999999999999999999999999999999999999865 89999988887 47889999999999999999998876
Q ss_pred HH
Q 006548 335 CL 336 (641)
Q Consensus 335 ~~ 336 (641)
+.
T Consensus 235 ~~ 236 (265)
T PRK10575 235 LM 236 (265)
T ss_pred hc
Confidence 53
No 135
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.2e-41 Score=352.32 Aligned_cols=222 Identities=21% Similarity=0.298 Sum_probs=185.2
Q ss_pred eEEEEeEEEEEeccc----ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 006548 105 SVVWKDLTVTIKGKR----RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~- 179 (641)
.++++||+++|..+. .+.+.+|+|+|+++++||+++|+|||||||||||++|+|+++|++ |+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~ 80 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS---GELLIDDHPLHFG 80 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCC---CEEEECCEECCCC
Confidence 589999999995211 113469999999999999999999999999999999999999875 999999987532
Q ss_pred ----CCceEEEEcCCCc--cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHH
Q 006548 180 ----PYGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGe 252 (641)
..+.++|++|++. +++.+||.|++.+..............+.++++++.+||. +..++. +..|||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~LS~G~ 154 (267)
T PRK15112 81 DYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYY------PHMLAPGQ 154 (267)
T ss_pred chhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcC------chhcCHHH
Confidence 1246999999874 6778899999987654432111112345688999999994 566654 45999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++ +++..+||++++|++|+++..|+
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999999865 89999988887 47888999999999999999998
Q ss_pred hhHHH
Q 006548 332 TLACL 336 (641)
Q Consensus 332 ~~~~~ 336 (641)
++++.
T Consensus 234 ~~~~~ 238 (267)
T PRK15112 234 TADVL 238 (267)
T ss_pred HHHHh
Confidence 77654
No 136
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.3e-42 Score=341.49 Aligned_cols=207 Identities=28% Similarity=0.356 Sum_probs=175.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 182 (641)
+.++|+++.+.+ +. .|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+... ..+
T Consensus 1 i~~~~l~~~~~~-----~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~---G~i~~~g~~~~~~~~~~~ 70 (211)
T cd03298 1 VRLDKIRFSYGE-----QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQS---GRVLINGVDVTAAPPADR 70 (211)
T ss_pred CEEEeEEEEeCC-----Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcCcCCHhHc
Confidence 368999998842 12 39999999999999999999999999999999998875 999999987532 235
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
.++|++|++.+++.+||+||+.+........ ....+++++++++.+||.+..++.+ .+||||||||++|||||
T Consensus 71 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~ia~al 143 (211)
T cd03298 71 PVSMLFQENNLFAHLTVEQNVGLGLSPGLKL-TAEDRQAIEVALARVGLAGLEKRLP------GELSGGERQRVALARVL 143 (211)
T ss_pred cEEEEecccccCCCCcHHHHHhcccccccCc-cHHHHHHHHHHHHHcCCHHHHhCCc------ccCCHHHHHHHHHHHHH
Confidence 6999999999999999999998754321111 1123556889999999988887754 49999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|+++|++ .++.++||++++|++|+++..|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999854 89999988887 5788999999999999998654
No 137
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-41 Score=353.05 Aligned_cols=218 Identities=26% Similarity=0.356 Sum_probs=185.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.+.++|+++.|.+ .+.+|+|+|+++++||+++|+|+||||||||+|+|+|+++|++ |+|.++|++....
T Consensus 3 ~l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 75 (277)
T PRK13652 3 LIETRDLCYSYSG----SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTS---GSVLIRGEPITKENIRE 75 (277)
T ss_pred eEEEEEEEEEeCC----CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEECCcCCHHH
Confidence 4789999999842 2359999999999999999999999999999999999999875 9999999875321
Q ss_pred -CceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 181 -YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
.+.++|++|++. .+...||.||+.+..... .......+++++++++.+||.+..++.+ +.||||||||++|
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~Gq~qrl~l 148 (277)
T PRK13652 76 VRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL-GLDEETVAHRVSSALHMLGLEELRDRVP------HHLSGGEKKRVAI 148 (277)
T ss_pred HHhheEEEecCcccccccccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChhHhcCCc------ccCCHHHHHHHHH
Confidence 246899999963 333679999998765322 1111123456889999999988887754 4999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|++++..+
T Consensus 149 araL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 149 AGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 99999999999999999999999999999999999875 89999988887 47889999999999999999999988754
No 138
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=351.93 Aligned_cols=218 Identities=23% Similarity=0.341 Sum_probs=185.9
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 180 (641)
..+.++||++.|+ .+.+|+|+|+++.+||+++|+||||||||||+++|+|+++|+. |+|.++|++....
T Consensus 6 ~~l~i~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~ 77 (265)
T PRK10253 6 ARLRGEQLTLGYG-----KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAH---GHVWLDGEHIQHYASK 77 (265)
T ss_pred cEEEEEEEEEEEC-----CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---cEEEECCEEhhhCCHH
Confidence 4689999999984 3469999999999999999999999999999999999998875 9999999864321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCC---CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
.+.++|++|++.+++.+||+||+.+......+ ......+++++++++.+||.+..++.+ ..||||||||
T Consensus 78 ~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~Gq~qr 151 (265)
T PRK10253 78 EVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV------DTLSGGQRQR 151 (265)
T ss_pred HHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc------ccCChHHHHH
Confidence 24689999999999899999999764211100 001123456889999999988777754 5999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++ .++.++||++++|++|++++.|++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREGKIVAQGAPKE 230 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999864 89999988887 47899999999999999999999877
Q ss_pred HH
Q 006548 335 CL 336 (641)
Q Consensus 335 ~~ 336 (641)
+.
T Consensus 231 ~~ 232 (265)
T PRK10253 231 IV 232 (265)
T ss_pred Hh
Confidence 64
No 139
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-41 Score=344.08 Aligned_cols=214 Identities=24% Similarity=0.313 Sum_probs=182.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 182 (641)
++++||++.|.+ + ..|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|++... ..+
T Consensus 2 l~~~~l~~~~~~-----~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 2 LKLTDITWLYHH-----L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPAS---GSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred eEEEEEEEEECC-----c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCeecCcCChhhc
Confidence 689999999842 1 238999999999999999999999999999999999875 999999987532 134
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
.++|++|++.+++.+|+.||+.+....... .....+++++++++.+||.+..++.+ ..||||||||++|||+|
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~laral 144 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGLK-LNAAQREKLHAIARQMGIEDLLARLP------GQLSGGQRQRVALARCL 144 (232)
T ss_pred cEEEEecccccccCCcHHHHHhcccccccC-CCHHHHHHHHHHHHHcCcHHHHhCCc------ccCCHHHHHHHHHHHHH
Confidence 699999999999999999999765321111 11123556899999999998887755 49999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++.++||++++|++|++++.|+++++.+
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999754 89999988887 47889999999999999999998876643
No 140
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-41 Score=346.98 Aligned_cols=223 Identities=25% Similarity=0.294 Sum_probs=183.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~--~~~~G~I~~~G~~~~~--- 179 (641)
.++++||++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. ...+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 77 (250)
T PRK14247 3 KIEIRDLKVSFG-----QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77 (250)
T ss_pred eEEEEeeEEEEC-----CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH
Confidence 488999999884 246999999999999999999999999999999999998742 0135999999987532
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
..+.++|++|++.+++.+||+||+.+....... ....+..+.++++++.+||.+..+... +..+.+|||||||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LSgG~~qrv 155 (250)
T PRK14247 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRL--DAPAGKLSGGQQQRL 155 (250)
T ss_pred HHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhh--cCCcccCCHHHHHHH
Confidence 124699999999888899999999886532211 111123456889999999864221111 235569999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 156 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999999964 78999988887 4788899999999999999999987764
No 141
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.2e-41 Score=349.98 Aligned_cols=216 Identities=30% Similarity=0.425 Sum_probs=184.0
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----- 180 (641)
+.++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 2 l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 73 (256)
T TIGR03873 2 LRLSRVSWSAG-----GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDA---GTVDLAGVDLHGLSRRAR 73 (256)
T ss_pred ceEEeEEEEEC-----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECCEEcccCCHHHH
Confidence 67899999984 3469999999999999999999999999999999999999875 9999999875321
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHh--cC-CCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALL--QL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~--~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
.+.++|++|++.+++.+||+||+.+.... .. .....+..+++.++++.+++.+..++.+ ..||||||||++
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~ 147 (256)
T TIGR03873 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM------STLSGGERQRVH 147 (256)
T ss_pred hhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc------ccCCHHHHHHHH
Confidence 24589999998888889999999875211 00 0011123456889999999988777754 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||||+.+|+++||||||+|||+.++..+.+.|++++++|.|||+++|++. ++.++||++++|++|+++..|+.+++.
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 999999999999999999999999999999999999877899999888874 788999999999999999999887653
No 142
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-41 Score=346.03 Aligned_cols=211 Identities=25% Similarity=0.413 Sum_probs=181.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.+. .+.+|+|+|+++.+||+++|+||||||||||+++|+|+.+|++ |+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 74 (241)
T PRK14250 3 EIEFKEVSYSSF-----GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTE---GSILIDGVDIKTIDVID 74 (241)
T ss_pred eEEEEeEEEEeC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEhhhcChHH
Confidence 588999999884 3469999999999999999999999999999999999998875 999999987421
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
.++.++|++|++.+++ .||+||+.+..... . ....++.++++.++|. +..++. +..||||||||++|
T Consensus 75 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~--~---~~~~~~~~~l~~~~l~~~~~~~~------~~~LS~G~~qrl~l 142 (241)
T PRK14250 75 LRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK--G---EKNVDVEYYLSIVGLNKEYATRD------VKNLSGGEAQRVSI 142 (241)
T ss_pred hhhcEEEEecCchhch-hhHHHHHhcchhhc--C---cHHHHHHHHHHHcCCCHHHhhCC------cccCCHHHHHHHHH
Confidence 1346999999998886 69999997653221 1 1235678899999996 566664 45999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 143 ARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999864 89999988887 4788899999999999999999987764
No 143
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-42 Score=339.52 Aligned_cols=219 Identities=24% Similarity=0.382 Sum_probs=198.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCce
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGS 183 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-~~~~ 183 (641)
.+++++|++++ +.+++++|+||.++||++.+++|||||||||.+++|.|+++|++ |+|.++|.+... .+.+
T Consensus 2 ~L~ie~vtK~F-----g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~---G~I~~~g~~~~~~~~~r 73 (300)
T COG4152 2 ALEIEGVTKSF-----GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTE---GEITWNGGPLSQEIKNR 73 (300)
T ss_pred ceEEecchhcc-----CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccC---ceEEEcCcchhhhhhhh
Confidence 57899999998 46789999999999999999999999999999999999999975 999999988643 3467
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~ 263 (641)
|||+|.+..|+|.+||.|.|.|.+.++-- ...+.+++++.+|+.+++.+...+++. +||.|++|++.+..+++
T Consensus 74 IGyLPEERGLy~k~tv~dql~yla~LkGm-~~~e~~~~~~~wLer~~i~~~~~~kIk------~LSKGnqQKIQfisavi 146 (300)
T COG4152 74 IGYLPEERGLYPKMTVEDQLKYLAELKGM-PKAEIQKKLQAWLERLEIVGKKTKKIK------ELSKGNQQKIQFISAVI 146 (300)
T ss_pred cccChhhhccCccCcHHHHHHHHHHhcCC-cHHHHHHHHHHHHHhccccccccchHH------HhhhhhhHHHHHHHHHh
Confidence 99999999999999999999998887621 122456779999999999988877664 99999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHh
Q 006548 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (641)
Q Consensus 264 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (641)
++|+++|||||+|||||.+.+.+.+.+.+++++|.|||+++|.. +.+.++||++++|++|+.|.+|+.+++...|
T Consensus 147 HePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 147 HEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred cCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 99999999999999999999999999999999999999988876 6899999999999999999999999988754
No 144
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-41 Score=346.71 Aligned_cols=222 Identities=19% Similarity=0.265 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC---CCCCCCceeEEEECCEeCCC--
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR---LPHSARMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~---~~~~~~~~G~I~~~G~~~~~-- 179 (641)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+ .++. ..+|+|.++|.+...
T Consensus 3 ~l~~~~~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14245 3 KIDARDVNFWYG-----DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKG 76 (250)
T ss_pred EEEEEEEEEEEC-----CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEeccccc
Confidence 688999999984 34699999999999999999999999999999999997 3442 125999999987532
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHH
Q 006548 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (641)
.++.++|++|++.+++ .|++||+.+....+.........+.++++++.+||.+..+... +..+..|||||||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~q 153 (250)
T PRK14245 77 VQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKL--KESAFALSGGQQQ 153 (250)
T ss_pred ccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhh--hCCcccCCHHHHH
Confidence 1246999999998887 6999999876543211111123456789999999864322111 2355699999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++. +++|||+++|++. ++.++||++++|++|++++.|++++
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999995 4789999888874 7889999999999999999999887
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+.+
T Consensus 232 ~~~ 234 (250)
T PRK14245 232 IFT 234 (250)
T ss_pred Hhc
Confidence 753
No 145
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-41 Score=346.01 Aligned_cols=223 Identities=22% Similarity=0.312 Sum_probs=182.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~--- 179 (641)
.++++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++ |....+|+|.++|++...
T Consensus 4 ~l~~~nl~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 4 KVKLEQLNVHFG-----KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred EEEEEEEEEEeC-----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 589999999984 3469999999999999999999999999999999999986 321135999999987531
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
.++.++|++|+..+++.+|++||+.+...........+.+++++++++.+++.+...... +..+..||||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~qr 156 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL--KSNAMELSGGQQQR 156 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHh--hCCcCcCCHHHHHH
Confidence 134699999999999999999999876432210011123456788999999864221111 22556999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|+++..|++++.
T Consensus 157 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 157 LCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNM-QQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999975 58999988887 478899999999999999999998775
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 235 ~ 235 (252)
T PRK14256 235 F 235 (252)
T ss_pred H
Confidence 4
No 146
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.5e-41 Score=365.41 Aligned_cols=205 Identities=26% Similarity=0.346 Sum_probs=178.7
Q ss_pred cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe----CC-C--------CCceEEEE
Q 006548 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK----SE-M--------PYGSYGFV 187 (641)
Q Consensus 121 ~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~----~~-~--------~~~~~~yv 187 (641)
+...+|+|+|+++++||+++|+|+||||||||+++|+|+++|+. |+|+++|++ .. . ..+.++||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~---G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSR---GSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 34578999999999999999999999999999999999999875 999999962 21 1 12469999
Q ss_pred cCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCc
Q 006548 188 ERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPH 267 (641)
Q Consensus 188 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~ 267 (641)
+|+..++|.+||+||+.++...+.. ...+.+++++++++.+||.+..++.+ .+|||||||||+|||||+.+|+
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~-~~~~~~~~a~e~le~vgL~~~~~~~~------~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGM-PEAERRKRVDEQLELVGLAQWADKKP------GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchhhcCCh------hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999987644311 11234567899999999998887755 4999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 268 VLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 268 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
||||||||+|||+.++..+.+.|++++++ |+|+|+++|+. +++.++||+|++|++|+++..|+++++.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999865 89999988887 5788999999999999999999998875
No 147
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=2.9e-41 Score=341.15 Aligned_cols=211 Identities=28% Similarity=0.287 Sum_probs=178.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++||++.|.+++ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++....
T Consensus 6 ~l~~~~l~~~~~~~~-~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 6 IVEVHHLKKSVGQGE-HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSS---GEVSLVGQPLHQMDEEA 81 (228)
T ss_pred eEEEeeeEEEccCCC-cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---eeEEECCEEcccCCHHH
Confidence 589999999985311 11359999999999999999999999999999999999998875 9999999875321
Q ss_pred -----CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
.+.++|++|++.+++.+||.||+.+....+. .......++++++++.+++.+..++.+ ..||||||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~Ge~qr 154 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG-ESSRQSRNGAKALLEQLGLGKRLDHLP------AQLSGGEQQR 154 (228)
T ss_pred HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCHhHhhCCh------hhCCHHHHHH
Confidence 2469999999999999999999987653321 111224567889999999988877755 4999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (641)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. .+ +.||++++|++|++++
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999765 899999989875 55 4599999999999875
No 148
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=9.2e-42 Score=372.82 Aligned_cols=229 Identities=25% Similarity=0.320 Sum_probs=198.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-ARMYGEVFVNGAKSE----- 178 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~-~~~~G~I~~~G~~~~----- 178 (641)
.++++||+++|... .....+++||||++++||++||+|.|||||||+.++|.|++++. ...+|+|.++|.+..
T Consensus 5 lL~V~nL~v~~~~~-~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 5 LLEVENLTVEFATD-GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred eEEEeceEEEEecC-CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 68999999999754 23357999999999999999999999999999999999999887 345799999998531
Q ss_pred ----CCCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHH
Q 006548 179 ----MPYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 179 ----~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe 252 (641)
...+.++|++|++ .+.|-+||.+.+......+......+..+++.++|+.+||.+-..+ +.+|++|||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~----~~yPheLSGG~ 159 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR----DRYPHQLSGGM 159 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh----ccCCcccCchH
Confidence 1235799999995 6788899999998777666543333466788999999999876654 35889999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
||||.||+||+.+|++||+||||++||+.++.+|+++|+++. +.|.++|+++|++ ..+.++||||+||++|++|+.|+
T Consensus 160 rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~G~ 238 (539)
T COG1123 160 RQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRVVVMYKGEIVETGP 238 (539)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEEecC
Confidence 999999999999999999999999999999999999999998 5599999988876 68999999999999999999999
Q ss_pred hhHHHHHh
Q 006548 332 TLACLQHF 339 (641)
Q Consensus 332 ~~~~~~~f 339 (641)
++++++.+
T Consensus 239 ~~~i~~~p 246 (539)
T COG1123 239 TEEILSNP 246 (539)
T ss_pred HHHHHhcc
Confidence 99998643
No 149
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-41 Score=347.89 Aligned_cols=223 Identities=22% Similarity=0.280 Sum_probs=181.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~-- 179 (641)
..++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |....+|+|.++|++...
T Consensus 12 ~~l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 12 SKIQVRNLNFYYG-----KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred ceEEEEEEEEEeC-----CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 4689999999984 2469999999999999999999999999999999999986 211135999999987521
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHH
Q 006548 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (641)
.++.++|++|+..+++ .||+||+.+...........+.+++++++++.+++.+...... +..+..|||||||
T Consensus 87 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~Gq~q 163 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKL--HQSGYSLSGGQQQ 163 (260)
T ss_pred cchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH--hcCCCCCCHHHHH
Confidence 1346999999998887 8999999876532211111123456889999999853211111 2245699999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.++||++++|++|+++..|++++
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNM-QQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999964 78999988887 47888999999999999999999877
Q ss_pred HH
Q 006548 335 CL 336 (641)
Q Consensus 335 ~~ 336 (641)
+.
T Consensus 242 ~~ 243 (260)
T PRK10744 242 IF 243 (260)
T ss_pred HH
Confidence 64
No 150
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-41 Score=352.07 Aligned_cols=220 Identities=22% Similarity=0.320 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEecccc-cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 105 SVVWKDLTVTIKGKRR-YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
.++++|++++|++..+ ..+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~i~g~~i~~~~~~ 80 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE---GKVYVDGLDTSDEENL 80 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEeccccccH
Confidence 5899999999963211 13569999999999999999999999999999999999999875 999999987532
Q ss_pred --CCceEEEEcCCCc--cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 --PYGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 --~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
..+.++|++|++. ++ ..||.||+.|...... ....+.+++++++++.+||.+..++.+ ..||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LS~G~~qr 152 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLG-IPPEEIRERVDESLKKVGMYEYRRHAP------HLLSGGQKQR 152 (280)
T ss_pred HHHhhheEEEecChhhhhc-cccHHHHHHhhHhhcC-CCHHHHHHHHHHHHHHCCCHhHhhCCc------ccCCHHHHHH
Confidence 1346999999974 44 4699999988654221 111224567899999999998888755 4999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. ++.. ||++++|++|+++..|++++
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~ 230 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKE 230 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999864 999999999885 5655 99999999999999999988
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+..
T Consensus 231 ~~~ 233 (280)
T PRK13633 231 IFK 233 (280)
T ss_pred Hhc
Confidence 754
No 151
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-41 Score=342.20 Aligned_cols=215 Identities=28% Similarity=0.376 Sum_probs=185.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 182 (641)
+.++|+++.+. .+.+++|+|+++++||+++|+|+||||||||+++|+|.++|+. |+|.++|++... ..+
T Consensus 1 l~~~~l~~~~~-----~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03300 1 IELENVSKFYG-----GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTS---GEILLDGKDITNLPPHKR 72 (232)
T ss_pred CEEEeEEEEeC-----CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcCcCChhhc
Confidence 36899999884 3469999999999999999999999999999999999999875 999999987532 235
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
.++|++|++.+++.+|++||+.+....... ......++++++++.+|+.+..++.+ ..||||||||++|||+|
T Consensus 73 ~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~lS~G~~qrl~laral 145 (232)
T cd03300 73 PVNTVFQNYALFPHLTVFENIAFGLRLKKL-PKAEIKERVAEALDLVQLEGYANRKP------SQLSGGQQQRVAIARAL 145 (232)
T ss_pred ceEEEecccccCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchhhcCCh------hhCCHHHHHHHHHHHHH
Confidence 799999999999889999999876543311 11123456889999999988887754 49999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
+.+|+++||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+.++..
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999999999999999865 89999998887 4788999999999999999999876654
No 152
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-41 Score=347.13 Aligned_cols=219 Identities=23% Similarity=0.321 Sum_probs=181.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~~--- 179 (641)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. ..+|+|.++|.+...
T Consensus 4 ~l~i~~v~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~ 78 (258)
T PRK14241 4 RIDVKDLNIYYG-----SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78 (258)
T ss_pred cEEEeeEEEEEC-----CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence 589999999984 2469999999999999999999999999999999999986420 125999999987521
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch----HHhhhhcCCCCCCCCCHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD----YANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ig~~~~~~~LSGG 251 (641)
.++.++|++|+..+++.+||+||+.+.............+++++++++.+|+.+ ..++ .+.+||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LS~G 152 (258)
T PRK14241 79 DPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDK------PGGGLSGG 152 (258)
T ss_pred ChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhC------CcccCCHH
Confidence 124699999999999999999999876543211111123456788999999853 3333 45699999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe------CCe
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS------NGN 325 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~------~G~ 325 (641)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|+ +|+
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~-~~~~~~~d~i~~l~~~~~~~~g~ 230 (258)
T PRK14241 153 QQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNM-QQAARVSDQTAFFNLEATGKPGR 230 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccCCCCce
Confidence 99999999999999999999999999999999999999999964 68999988887 47889999999997 799
Q ss_pred EEEEeChhHHH
Q 006548 326 TLFFGETLACL 336 (641)
Q Consensus 326 iv~~G~~~~~~ 336 (641)
+++.|+++++.
T Consensus 231 i~~~~~~~~~~ 241 (258)
T PRK14241 231 LVEIDDTEKIF 241 (258)
T ss_pred EEecCCHHHHH
Confidence 99999987764
No 153
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-41 Score=347.40 Aligned_cols=223 Identities=20% Similarity=0.273 Sum_probs=181.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~-- 179 (641)
..++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++ |....+|+|.++|++...
T Consensus 11 ~~l~i~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~ 85 (259)
T PRK14274 11 EVYQINGMNLWYG-----QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85 (259)
T ss_pred ceEEEeeEEEEEC-----CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence 3689999999984 3469999999999999999999999999999999999986 321135999999987531
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHH
Q 006548 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (641)
.++.++|++|++.+++. ||+||+.+...........+..++++++++.+++.+...... +..+.+|||||||
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l--~~~~~~LS~Gq~q 162 (259)
T PRK14274 86 VDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRL--HTQALSLSGGQQQ 162 (259)
T ss_pred cCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhh--hCCcccCCHHHHH
Confidence 12469999999988875 999999876433211011123456788899999854221111 2345699999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|+++..|++++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 240 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNM-QQAARVSDQTAFFYMGELVECNDTNK 240 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999965 78999988987 47889999999999999999999887
Q ss_pred HH
Q 006548 335 CL 336 (641)
Q Consensus 335 ~~ 336 (641)
+.
T Consensus 241 ~~ 242 (259)
T PRK14274 241 MF 242 (259)
T ss_pred Hh
Confidence 64
No 154
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-41 Score=349.74 Aligned_cols=218 Identities=21% Similarity=0.284 Sum_probs=184.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..++++|+++.+.+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+...
T Consensus 6 ~~l~~~nl~~~~~~---~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~i~~~~~~ 79 (271)
T PRK13632 6 VMIKVENVSFSYPN---SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQS---GEIKIDGITISKENLK 79 (271)
T ss_pred eEEEEEeEEEEcCC---CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEecCcCCHH
Confidence 36899999998842 13469999999999999999999999999999999999999875 999999987532
Q ss_pred -CCceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 -PYGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 -~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
.++.++|++|++. .++.+||+||+.+...... ....+..++++++++.+||.+..++.+ ..||||||||++
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~ 152 (271)
T PRK13632 80 EIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKK-VPPKKMKDIIDDLAKKVGMEDYLDKEP------QNLSGGQKQRVA 152 (271)
T ss_pred HHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHcCCHHHhhCCc------ccCCHHHHHHHH
Confidence 1346999999974 5677899999987643221 111123456889999999998887755 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||||+.+|++|||||||+|||+.++..+++.|++++++ ++|+|+++|++. ++ ..||++++|++|+++..|+++++.
T Consensus 153 laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 153 IASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999866 589999999985 55 479999999999999999987764
No 155
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-41 Score=363.50 Aligned_cols=207 Identities=23% Similarity=0.355 Sum_probs=181.0
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
+++ ||+++|.+ + .+ |+|+++++||+++|+|||||||||||++|+|+++|++ |+|.++|++...
T Consensus 2 l~~-~l~k~~~~-----~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~---G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 2 LEL-NFKQQLGD-----L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQK---GRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred eEE-EEEEEeCC-----E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccccccc
Confidence 456 88888842 2 23 8999999999999999999999999999999999875 999999986421
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
..+.++|++|+..+++.+||+||+.++.. ....++++++++.+||.+..++.+ ++|||||||||
T Consensus 71 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgGq~qRv 137 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA-------KSMVAQFDKIVALLGIEPLLDRYP------GSLSGGEKQRV 137 (352)
T ss_pred cchhhCCEEEEcCCcccCCCCcHHHHHHhhhh-------hhhHHHHHHHHHHcCCchhhhCCc------ccCCHHHHHHH
Confidence 13579999999999999999999987532 123456889999999998887755 49999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|+++|++ +++..+||++++|++|+++..|+++++
T Consensus 138 alaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~i 216 (352)
T PRK11144 138 AIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEEV 216 (352)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999865 89999988887 578999999999999999999999887
Q ss_pred HH
Q 006548 336 LQ 337 (641)
Q Consensus 336 ~~ 337 (641)
..
T Consensus 217 ~~ 218 (352)
T PRK11144 217 WA 218 (352)
T ss_pred Hh
Confidence 64
No 156
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-41 Score=343.87 Aligned_cols=222 Identities=20% Similarity=0.279 Sum_probs=181.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|++++....+|+|.++|++...
T Consensus 2 ~~~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~ 76 (246)
T PRK14269 2 IAKTTNLNLFYG-----KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVA 76 (246)
T ss_pred ceeeeeeEEEEC-----CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHH
Confidence 468999999984 2469999999999999999999999999999999999975311135999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
.++.++|++|++.+++ .||+||+.+....+.. ......+++++++++.++|.+...... +..+..|||||||||+|
T Consensus 77 ~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 77 LRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKL--KQNALALSGGQQQRLCI 153 (246)
T ss_pred HhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHh--cCCcccCCHHHHHHHHH
Confidence 1246999999998887 6999999876543211 011123456788999999964332222 23556999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|+|+++|++ +++.++||++++|++|++++.|++++..
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999865 88999988887 4788999999999999999999987754
No 157
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-41 Score=353.96 Aligned_cols=220 Identities=18% Similarity=0.276 Sum_probs=182.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|+++....+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+...
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISET---GQTIVGDYAIPANLKKI 82 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEcccccccc
Confidence 589999999985321112359999999999999999999999999999999999998875 999999986421
Q ss_pred -----CCceEEEEcCCCc--cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHH
Q 006548 180 -----PYGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGG 251 (641)
.++.++|++|++. ++ ..||+||+.+..... .....+..++++++++.++|. +..++.+ ..||||
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~-~~~~~~~~~~~~~ll~~~~L~~~~~~~~~------~~LS~G 154 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLF-QETIEKDIAFGPVNL-GENKQEAYKKVPELLKLVQLPEDYVKRSP------FELSGG 154 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhh-hhHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChhHhcCCh------hhCCHH
Confidence 1246899999963 44 469999998865321 111112345678899999994 6666644 599999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999864 89999988887 4788999999999999999999
Q ss_pred ChhHHH
Q 006548 331 ETLACL 336 (641)
Q Consensus 331 ~~~~~~ 336 (641)
+++++.
T Consensus 234 ~~~~~~ 239 (289)
T PRK13645 234 SPFEIF 239 (289)
T ss_pred CHHHHh
Confidence 988764
No 158
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2.8e-41 Score=337.98 Aligned_cols=208 Identities=26% Similarity=0.383 Sum_probs=177.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 182 (641)
++++||++.|. .+++|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++... ..+
T Consensus 1 ~~~~~l~~~~~-------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 70 (213)
T TIGR01277 1 LALDKVRYEYE-------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPAS---GSIKVNDQSHTGLAPYQR 70 (213)
T ss_pred CeEEeeeEEeC-------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEEcccCChhcc
Confidence 36899999883 24689999999999999999999999999999999999875 999999987532 235
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
.++|++|++.+++.+|+.||+.+....... .....+++++++++.+||.+..++.+ +.||||||||++|||+|
T Consensus 71 ~i~~v~q~~~~~~~~t~~en~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~laral 143 (213)
T TIGR01277 71 PVSMLFQENNLFAHLTVRQNIGLGLHPGLK-LNAEQQEKVVDAAQQVGIADYLDRLP------EQLSGGQRQRVALARCL 143 (213)
T ss_pred ceEEEeccCccCCCCcHHHHHHhHhhccCC-ccHHHHHHHHHHHHHcCcHHHhhCCc------ccCCHHHHHHHHHHHHH
Confidence 699999999999999999999875432111 11123456888999999988877754 59999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
+.+|++++|||||+|||+.++..+.+.|+++.++ |+|+|+++|++ .++.++||++++|++|+++..|+
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999999865 89999988887 47788999999999999998875
No 159
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-41 Score=347.98 Aligned_cols=218 Identities=20% Similarity=0.261 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++|+++.|.+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 7 ~l~i~~l~~~~~~---~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 7 IIVFKNVSFQYQS---DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKS---GEIFYNNQAITDDNFEK 80 (269)
T ss_pred eEEEEEEEEEcCC---CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEECCcCCHHH
Confidence 5899999999852 12459999999999999999999999999999999999999875 9999999875321
Q ss_pred -CceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 181 -YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
.+.++|++|++. +++..|+.+|+.+....... ......++++++++.+++.+..++.+ ..||||||||++|
T Consensus 81 ~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~l 153 (269)
T PRK13648 81 LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAV-PYDEMHRRVSEALKQVDMLERADYEP------NALSGGQKQRVAI 153 (269)
T ss_pred HHhheeEEEeChHHhcccccHHHHHHhhHHhcCC-CHHHHHHHHHHHHHHcCCchhhhCCc------ccCCHHHHHHHHH
Confidence 246899999974 67778999999876432211 11123456889999999988777644 5999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.. ||++++|++|++++.|++++..+
T Consensus 154 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 154 AGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999999865 899999999985 5655 99999999999999999887643
No 160
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-41 Score=344.53 Aligned_cols=222 Identities=26% Similarity=0.327 Sum_probs=180.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~--- 179 (641)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |+...+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14239 5 ILQVSDLSVYYN-----KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79 (252)
T ss_pred eEEEEeeEEEEC-----CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc
Confidence 589999999984 3469999999999999999999999999999999999853 521125999999987521
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
.++.++|++|+..+++ +||+||+.+.............+++++++++.+++.+...... +..+..||||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~qr 156 (252)
T PRK14239 80 DTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRL--HDSALGLSGGQQQR 156 (252)
T ss_pred chHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHH--hcCcccCCHHHHHH
Confidence 1346999999998887 8999999876433211111123456788899998853221111 23556999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|++++.|+++++
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSM-QQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999975 68999988887 478899999999999999999998876
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 235 ~ 235 (252)
T PRK14239 235 F 235 (252)
T ss_pred H
Confidence 4
No 161
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-41 Score=347.96 Aligned_cols=223 Identities=20% Similarity=0.287 Sum_probs=182.0
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~--~~~~G~I~~~G~~~~~-- 179 (641)
..++++||++.|. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+.+|. ...+|+|.++|++...
T Consensus 18 ~~l~~~nl~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 18 IKMRARDVSVFYG-----EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred ceEEEEeEEEEEC-----CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 3689999999984 346999999999999999999999999999999999998741 0124999999987531
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHH
Q 006548 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGer 253 (641)
.++.++|++|++.+++. ||.||+.+....+... ......++++++++.+|+.+...... +..+..||||||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LSgGq~ 169 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRL--HEPGTGLSGGQQ 169 (267)
T ss_pred cchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHh--hCCcccCCHHHH
Confidence 12468999999888875 9999998865432110 11123456789999999964321111 224569999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ +.+.++||++++|++|+++..|+++
T Consensus 170 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 170 QRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSM-QQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCH-HHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999975 68999988887 4788999999999999999999887
Q ss_pred HHH
Q 006548 334 ACL 336 (641)
Q Consensus 334 ~~~ 336 (641)
++.
T Consensus 248 ~~~ 250 (267)
T PRK14235 248 KMF 250 (267)
T ss_pred HHH
Confidence 764
No 162
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=3.9e-41 Score=342.47 Aligned_cols=215 Identities=28% Similarity=0.403 Sum_probs=185.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 182 (641)
++++|+++.|. .+.+|+|+|+++.+||+++|+||||||||||+++|+|+++|+. |+|.++|.+... ..+
T Consensus 1 i~i~~l~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~i~g~~~~~~~~~~~ 72 (237)
T TIGR00968 1 IEIANISKRFG-----SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDS---GRIRLNGQDATRVHARDR 72 (237)
T ss_pred CEEEEEEEEEC-----CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcCcCChhhc
Confidence 36899999884 3469999999999999999999999999999999999998875 999999987532 235
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
.++|++|++.+++.+|+.||+.+....+.. ......+.++++++.+++.+..++.+ ..|||||+||++|||+|
T Consensus 73 ~i~~~~q~~~~~~~~t~~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~lS~G~~qrl~laral 145 (237)
T TIGR00968 73 KIGFVFQHYALFKHLTVRDNIAFGLEIRKH-PKAKIKARVEELLELVQLEGLGDRYP------NQLSGGQRQRVALARAL 145 (237)
T ss_pred CEEEEecChhhccCCcHHHHHHhHHHhcCC-CHHHHHHHHHHHHHHcCCHhHhhCCh------hhCCHHHHHHHHHHHHH
Confidence 699999999999999999999876543211 11123456789999999988887755 49999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++.++||++++|++|++++.|+.++..
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999875 89999999987 4788999999999999999999987764
No 163
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-41 Score=350.35 Aligned_cols=222 Identities=20% Similarity=0.276 Sum_probs=186.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 180 (641)
..++++|+++.|++. .+.+|+|+|+++.+||+++|+||||||||||+++|+|+++|+...+|+|.++|.+....
T Consensus 4 ~~l~i~~l~~~~~~~---~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~ 80 (282)
T PRK13640 4 NIVEFKHVSFTYPDS---KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVW 80 (282)
T ss_pred ceEEEEEEEEEcCCC---CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHH
Confidence 368999999998521 24699999999999999999999999999999999999988632349999999875321
Q ss_pred --CceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 181 --YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 181 --~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
.+.++|++|++. .++..||.||+.+...... ....+.+++++++++.+||.+..++.+ +.||||||||++
T Consensus 81 ~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~------~~LS~G~~qrv~ 153 (282)
T PRK13640 81 DIREKVGIVFQNPDNQFVGATVGDDVAFGLENRA-VPRPEMIKIVRDVLADVGMLDYIDSEP------ANLSGGQKQRVA 153 (282)
T ss_pred HHHhheEEEEECHHHhhccCCHHHHHHhhHHhCC-CCHHHHHHHHHHHHHHCCChhHhcCCc------ccCCHHHHHHHH
Confidence 246899999974 5677899999987643221 111123467889999999998877754 599999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++ ..||++++|++|++++.|+++++.
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999865 899999999885 55 579999999999999999998875
Q ss_pred H
Q 006548 337 Q 337 (641)
Q Consensus 337 ~ 337 (641)
.
T Consensus 232 ~ 232 (282)
T PRK13640 232 S 232 (282)
T ss_pred c
Confidence 4
No 164
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=4.9e-41 Score=345.96 Aligned_cols=217 Identities=23% Similarity=0.281 Sum_probs=181.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----CCC
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-----SEM 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~-----~~~ 179 (641)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+ ...
T Consensus 6 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 6 LLSVRGLTKLYG-----PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDA---GEVHYRMRDGQLRDLYA 77 (258)
T ss_pred eEEEeeeEEEcC-----CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCcccccccccc
Confidence 589999999984 2469999999999999999999999999999999999999875 999999986 321
Q ss_pred ---------CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCC
Q 006548 180 ---------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKG 247 (641)
Q Consensus 180 ---------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~ 247 (641)
..+.++|++|++ .+++.+|+.||+.+..............+++.++++.+++.+ ..++. +..
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~ 151 (258)
T PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDL------PTT 151 (258)
T ss_pred CCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCC------Ccc
Confidence 123589999997 367788999999764322110111123456788999999974 56654 459
Q ss_pred CCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 248 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|+. ..+.++||++++|++|++
T Consensus 152 LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~~~d~i~~l~~g~i 230 (258)
T PRK11701 152 FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLAHRLLVMKQGRV 230 (258)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999865 89999988887 478889999999999999
Q ss_pred EEEeChhHHH
Q 006548 327 LFFGETLACL 336 (641)
Q Consensus 327 v~~G~~~~~~ 336 (641)
++.|+++++.
T Consensus 231 ~~~~~~~~~~ 240 (258)
T PRK11701 231 VESGLTDQVL 240 (258)
T ss_pred EEeCCHHHHh
Confidence 9999987754
No 165
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-41 Score=335.21 Aligned_cols=195 Identities=31% Similarity=0.527 Sum_probs=167.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----P 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~ 180 (641)
.+.|+||++.|+.++ .++.+|+|+|+.+++||+++|+||||||||||+++|+|+.++....+|+|.++|.+... .
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGR-SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81 (202)
T ss_pred eEEEEccEEEeccCC-CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhh
Confidence 579999999997643 45689999999999999999999999999999999999998321134999999987532 2
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
.+.++|++|++.+++.+||+||+.+..... . +..+..||||||||++|||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------------------------~------~~~~~~LS~Ge~qrl~lar 131 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------G------NEFVRGISGGERKRVSIAE 131 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhhc------------------------c------ccchhhCCHHHHHHHHHHH
Confidence 356999999999999999999997643110 2 2345699999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
||+.+|++|||||||+|||+.++..+.+.|++++++ +.|+|+++||+.+++.++||++++|++|++++.|
T Consensus 132 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 132 ALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999865 6788888888777889999999999999998764
No 166
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-41 Score=343.39 Aligned_cols=222 Identities=20% Similarity=0.272 Sum_probs=181.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~--~~~~G~I~~~G~~~~~--- 179 (641)
.+.++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|. ...+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (251)
T PRK14270 4 KMESKNLNLWYG-----EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDV 78 (251)
T ss_pred EEEEEEeEEEEC-----CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccc
Confidence 589999999884 346999999999999999999999999999999999998651 0135999999987531
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
..+.++|++|++.+++ +|++||+.+..............++++++++.+++.+...... +..+..||||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~qr 155 (251)
T PRK14270 79 DVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDL--KKSALKLSGGQQQR 155 (251)
T ss_pred cHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHh--hCCcccCCHHHHHH
Confidence 1246999999998887 8999999876543211111123456788999998853211111 22456999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|+++|++ .++.++||++++|++|++++.|+++++
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNM-QQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCH-HHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999976 58999988887 578899999999999999999998876
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 234 ~ 234 (251)
T PRK14270 234 F 234 (251)
T ss_pred h
Confidence 4
No 167
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-41 Score=343.31 Aligned_cols=223 Identities=21% Similarity=0.331 Sum_probs=181.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~--~~~~~G~I~~~G~~~~~--- 179 (641)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~ 77 (250)
T PRK14262 3 IIEIENFSAYYG-----EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77 (250)
T ss_pred eEEEEeeEEEeC-----CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh
Confidence 478999999984 34699999999999999999999999999999999999874 10135999999987531
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
..+.++|++|++.+++ .||+||+.+.............++.++++++.+++.+..+... +..+.+||||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~Gq~qr 154 (250)
T PRK14262 78 DVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSEL--NKPGTRLSGGQQQR 154 (250)
T ss_pred hHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHH--hCChhhcCHHHHHH
Confidence 1346999999998887 8999999876533211111123455788899999864322211 23556999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|+++|++ +.+.++||++++|++|+++..|+++++
T Consensus 155 ~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 155 LCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNI-GQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999975 68999988887 468899999999999999999998776
Q ss_pred HH
Q 006548 336 LQ 337 (641)
Q Consensus 336 ~~ 337 (641)
.+
T Consensus 233 ~~ 234 (250)
T PRK14262 233 VE 234 (250)
T ss_pred Hh
Confidence 43
No 168
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.9e-41 Score=362.64 Aligned_cols=208 Identities=27% Similarity=0.393 Sum_probs=180.0
Q ss_pred eEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---------C
Q 006548 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---------P 180 (641)
Q Consensus 110 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---------~ 180 (641)
||++.|. ++. + |+|+++++||+++|+|||||||||||++|+|+++|++ |+|.++|++... .
T Consensus 4 ~l~~~~~-----~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~---G~I~~~g~~i~~~~~~~~~~~~ 73 (354)
T TIGR02142 4 RFSKRLG-----DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDE---GEIVLNGRTLFDSRKGIFLPPE 73 (354)
T ss_pred EEEEEEC-----CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECccCccccccchh
Confidence 6777773 223 4 9999999999999999999999999999999999875 999999987421 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
++.++|++|++.+++.+||+||+.++.... . ..+.+++++++++.+||.+..++.+ .+|||||||||+|||
T Consensus 74 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-~--~~~~~~~~~~~l~~~gL~~~~~~~~------~~LSgGqkqRvalAr 144 (354)
T TIGR02142 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRA-R--PSERRISFERVIELLGIGHLLGRLP------GRLSGGEKQRVAIGR 144 (354)
T ss_pred hCCeEEEecCCccCCCCcHHHHHHHHhhcc-C--hhHHHHHHHHHHHHcCChhHhcCCh------hhCCHHHHHHHHHHH
Confidence 346999999999999999999998865321 1 1123456899999999998888755 499999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|+++|++ +++..+||++++|++|+++..|+++++..
T Consensus 145 aL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 145 ALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred HHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 999999999999999999999999999999999865 89999988887 47889999999999999999999888754
No 169
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=2e-41 Score=343.06 Aligned_cols=199 Identities=31% Similarity=0.422 Sum_probs=169.9
Q ss_pred eeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHH
Q 006548 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYY 205 (641)
Q Consensus 126 L~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~ 205 (641)
|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|++........+|++|++.+++.+||+||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTS---GGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 578999999999999999999999999999999998875 99999998754322235899999999999999999987
Q ss_pred HHHhcCCCc-cchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHH
Q 006548 206 SALLQLPGF-FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284 (641)
Q Consensus 206 ~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~ 284 (641)
......+.. ..+.+++++++++.+||.+..++.+ .+||||||||++|||+|+.+|++|||||||+|||+.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 78 AVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRP------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCCh------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 632111111 1123456889999999988877755 499999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 285 LMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 285 ~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
.+.+.|++++++ |+|||+++|++ +++.++||++++|++|+++..|+..+
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCcee
Confidence 999999999865 89999988887 47889999999999999998886543
No 170
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-41 Score=342.38 Aligned_cols=222 Identities=23% Similarity=0.338 Sum_probs=180.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~--~~~~~G~I~~~G~~~~~--- 179 (641)
.+.++||++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|++...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14240 3 KISVKDLDLFYG-----DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77 (250)
T ss_pred eEEEEEEEEEEC-----CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 478999999984 24699999999999999999999999999999999998753 11135999999987531
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
.++.++|++|++.+++ +|++||+.+.............++.++++++.+++.+...... +..+..||||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~G~~qr 154 (250)
T PRK14240 78 DVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRL--KKSALGLSGGQQQR 154 (250)
T ss_pred chHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHH--hcCCCCCCHHHHHH
Confidence 1346999999998887 8999999886543211111123456788899998753221111 22456999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+. +.+.++||++++|++|+++..|+++++
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 155 LCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNM-QQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCH-HHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999964 78999988886 478899999999999999999988775
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 233 ~ 233 (250)
T PRK14240 233 F 233 (250)
T ss_pred H
Confidence 4
No 171
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.7e-41 Score=340.31 Aligned_cols=214 Identities=26% Similarity=0.377 Sum_probs=184.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~ 182 (641)
+.++|+++.+. . ++|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+... ..+
T Consensus 1 l~~~~l~~~~~-----~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~---G~v~i~g~~~~~~~~~~~ 71 (235)
T cd03299 1 LKVENLSKDWK-----E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDS---GKILLNGKDITNLPPEKR 71 (235)
T ss_pred CeeEeEEEEeC-----C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCEEcCcCChhHc
Confidence 36889999884 1 38999999999999999999999999999999999999875 999999987532 235
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
.++|++|++.+++.+|+.||+.+...... .......+.+.++++.+||.+..++.+ +.||||||||++|||||
T Consensus 72 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~laral 144 (235)
T cd03299 72 DISYVPQNYALFPHMTVYKNIAYGLKKRK-VDKKEIERKVLEIAEMLGIDHLLNRKP------ETLSGGEQQRVAIARAL 144 (235)
T ss_pred CEEEEeecCccCCCccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCChhHHhcCc------ccCCHHHHHHHHHHHHH
Confidence 79999999999999999999987643321 111223456788999999988887755 49999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++.++||++++|++|++++.|+.++..
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999765 89999999987 4788899999999999999999877654
No 172
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-41 Score=342.76 Aligned_cols=222 Identities=22% Similarity=0.290 Sum_probs=181.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~~--- 179 (641)
.++++||++.|. .+.+|+|+|+++.+||+++|+||||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~-----~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 78 (251)
T PRK14249 4 KIKIRGVNFFYH-----KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78 (251)
T ss_pred eEEEEEEEEEEC-----CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc
Confidence 588999999984 3469999999999999999999999999999999999998751 124999999986421
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
.++.++|++|++.+++. |++||+.+....+........++.++++++.+++.+...... +..+..||||||||
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~Gq~qr 155 (251)
T PRK14249 79 DVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNL--HKSGLALSGGQQQR 155 (251)
T ss_pred ChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHh--hCCcccCCHHHHHH
Confidence 13569999999988875 999999886543211111123455777888888754322221 23566999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|||+++|+. .++.++||++++|++|++++.|+++++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNM-QQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 999999999999999999999999999999999999995 588999998887 478899999999999999999998776
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 234 ~ 234 (251)
T PRK14249 234 F 234 (251)
T ss_pred H
Confidence 4
No 173
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-41 Score=345.43 Aligned_cols=223 Identities=21% Similarity=0.282 Sum_probs=182.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~--~~~~G~I~~~G~~~~~-- 179 (641)
..++++||++.+. .+.+|+|+|+++.+||+++|+||||||||||+++|+|+++|. ...+|+|.++|.+...
T Consensus 19 ~~l~~~nl~~~~~-----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 19 IALSTKDLHVYYG-----KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE 93 (267)
T ss_pred eEEEEeeEEEEEC-----CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence 3689999999984 357999999999999999999999999999999999998641 0135999999987531
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHH
Q 006548 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (641)
..+.++|++|++.+++ .||+||+.++............++++.++++.++|.+..+... +..++.|||||||
T Consensus 94 ~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~--~~~~~~LS~G~~q 170 (267)
T PRK14237 94 INVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDL--HKSALTLSGGQQQ 170 (267)
T ss_pred CChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhh--cCCcccCCHHHHH
Confidence 1346999999988887 6999999886432211111123456788999999864322222 2356799999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++ ++.|||+++|++. ++.++||++++|++|++++.|++++
T Consensus 171 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 171 RLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999996 4789999888874 7889999999999999999999877
Q ss_pred HH
Q 006548 335 CL 336 (641)
Q Consensus 335 ~~ 336 (641)
+.
T Consensus 249 ~~ 250 (267)
T PRK14237 249 IF 250 (267)
T ss_pred Hh
Confidence 64
No 174
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-41 Score=345.74 Aligned_cols=218 Identities=22% Similarity=0.300 Sum_probs=178.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~--- 179 (641)
.++++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ +....+|+|.++|++...
T Consensus 21 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 21 ILEVKDLSIYYG-----EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred eEEEEEEEEEeC-----CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 589999999984 3469999999999999999999999999999999999864 210124999999987531
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc----hHHhhhhcCCCCCCCCCHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~~LSGG 251 (641)
..+.++|++|++.+++. |++||+.+.............++.+.++++.+++. +..++ .+..||||
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LSgG 168 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHS------SALSLSGG 168 (268)
T ss_pred cHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhc------CcccCCHH
Confidence 13469999999988875 99999987643221111111345577888888884 33444 45699999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.++||++++|++|++++.|+
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~ 246 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNM-QQALRVSDRTAFFLNGDLVEYDQ 246 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999965 68999988887 47889999999999999999999
Q ss_pred hhHHH
Q 006548 332 TLACL 336 (641)
Q Consensus 332 ~~~~~ 336 (641)
++++.
T Consensus 247 ~~~~~ 251 (268)
T PRK14248 247 TEQIF 251 (268)
T ss_pred HHHHH
Confidence 87764
No 175
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-40 Score=342.13 Aligned_cols=223 Identities=22% Similarity=0.278 Sum_probs=180.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~~--- 179 (641)
.+.++|+++.|+ .+.+|+|+|+.+++||+++|+||||||||||+|+|+|+++|.. ..+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (252)
T PRK14272 4 LLSAQDVNIYYG-----DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRV 78 (252)
T ss_pred EEEEeeeEEEEC-----CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCcc
Confidence 578999999984 3469999999999999999999999999999999999987631 125999999987531
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
.++.++|++|++.+++.+|+.||+.+..............+.++++++.+++.+...... +..++.||||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~G~~qr 156 (252)
T PRK14272 79 DPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRL--KTPATGLSGGQQQR 156 (252)
T ss_pred CHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhh--cCCcccCCHHHHHH
Confidence 124699999999999999999999876432210011112345667777777643211111 23456999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|+++|++. ++.++||++++|++|++++.|+++++
T Consensus 157 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 157 LCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999974 689999888874 78889999999999999999998776
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 235 ~ 235 (252)
T PRK14272 235 F 235 (252)
T ss_pred H
Confidence 4
No 176
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-41 Score=342.27 Aligned_cols=221 Identities=21% Similarity=0.269 Sum_probs=180.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~~--- 179 (641)
.++++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+.++.. ..+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 77 (249)
T PRK14253 3 KFNIENLDLFYG-----ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77 (249)
T ss_pred eEEEeccEEEEC-----CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccc
Confidence 578999999984 3469999999999999999999999999999999999987630 125999999987521
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
.++.++|++|++.+++ .||.||+.+.............++++.++++.+++.+...... +..+.+|||||||||
T Consensus 78 ~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~LS~G~~qrv 154 (249)
T PRK14253 78 VADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRL--KSHAFGLSGGQQQRL 154 (249)
T ss_pred hHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHh--hcCcccCCHHHHHHH
Confidence 1246999999999887 8999999876432211111123456778888888854221111 234569999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|+++..|+++++
T Consensus 155 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 155 CIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSM-QQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999976 58999988887 478999999999999999999988765
No 177
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-41 Score=348.04 Aligned_cols=219 Identities=23% Similarity=0.334 Sum_probs=182.1
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEeCCC-
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-----RMYGEVFVNGAKSEM- 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~-----~~~G~I~~~G~~~~~- 179 (641)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. ..+|+|.++|.+...
T Consensus 2 l~~~nl~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~ 76 (272)
T PRK13547 2 LTADHLHVARR-----HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76 (272)
T ss_pred eEEEEEEEEEC-----CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccC
Confidence 68999999884 3469999999999999999999999999999999999998750 014999999987532
Q ss_pred C----CceEEEEcCCCccCCCCCHHHHHHHHHHhcCC--C-ccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHH
Q 006548 180 P----YGSYGFVERETTLIGSLTVREYLYYSALLQLP--G-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 180 ~----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~--~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe 252 (641)
. .+.++|++|++.+++.+||+||+.+....... . ...+..++++++++.+|+.+..++.+ ..|||||
T Consensus 77 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~ 150 (272)
T PRK13547 77 DAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV------TTLSGGE 150 (272)
T ss_pred CHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc------ccCCHHH
Confidence 1 23589999998766679999999875321100 0 01123456889999999988776644 5999999
Q ss_pred HHHHHHHHHHH---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 253 RRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 253 rqRv~IA~aL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
||||+|||+|+ .+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++ +++.++||++++|+
T Consensus 151 ~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~~~~~~d~i~~l~ 229 (272)
T PRK13547 151 LARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NLAARHADRIAMLA 229 (272)
T ss_pred HHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEE
Confidence 99999999999 599999999999999999999999999999876 89999988887 47888999999999
Q ss_pred CCeEEEEeChhHHH
Q 006548 323 NGNTLFFGETLACL 336 (641)
Q Consensus 323 ~G~iv~~G~~~~~~ 336 (641)
+|++++.|+++++.
T Consensus 230 ~G~i~~~g~~~~~~ 243 (272)
T PRK13547 230 DGAIVAHGAPADVL 243 (272)
T ss_pred CCeEEEecCHHHHc
Confidence 99999999887663
No 178
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-40 Score=345.62 Aligned_cols=218 Identities=20% Similarity=0.228 Sum_probs=184.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|+++ ..+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|++ |+|.++|++...
T Consensus 4 ~l~~~~l~~~~~~~--~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~i~~~~~~~ 78 (277)
T PRK13642 4 ILEVENLVFKYEKE--SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFE---GKVKIDGELLTAENVWN 78 (277)
T ss_pred eEEEEEEEEEcCCC--CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---CEEEECCEECCcCCHHH
Confidence 58999999998531 12459999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 PYGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 ~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
..+.++|++|++. .++..||.||+.++...... ...+..++++++++.+||.+..++.+ ..||||||||++|
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~l 151 (277)
T PRK13642 79 LRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGI-PREEMIKRVDEALLAVNMLDFKTREP------ARLSGGQKQRVAV 151 (277)
T ss_pred HhcceEEEEECHHHhhccCCHHHHHHhhHHHcCC-CHHHHHHHHHHHHHHCCCHhHhhCCc------ccCCHHHHHHHHH
Confidence 1346999999974 56678999999876432211 11123456889999999988877754 5999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|+.. ++. .||++++|++|+++..|+++++.
T Consensus 152 AraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 152 AGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999875 999999888875 554 69999999999999999988775
No 179
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=6.5e-41 Score=340.65 Aligned_cols=199 Identities=26% Similarity=0.343 Sum_probs=169.6
Q ss_pred cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CCceEEEEc-CCCccCC
Q 006548 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PYGSYGFVE-RETTLIG 195 (641)
Q Consensus 121 ~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~~~~~~yv~-Q~~~l~~ 195 (641)
+.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..+.++|++ |++.+++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTS---GEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 34579999999999999999999999999999999999998875 999999986421 134689997 5567888
Q ss_pred CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCC
Q 006548 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPL 275 (641)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPt 275 (641)
.+||+||+.+....... ...+..++++++++.+|+.+..++.+. .||||||||++||++|+.+|++|||||||
T Consensus 109 ~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~------~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 109 DLPVIDSFYLLAAIYDL-PPARFKKRLDELSELLDLEELLDTPVR------QLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhHhcCChh------hCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999999876543211 111234567889999999888877554 89999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 276 YHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 276 sgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999865 88999988887 4788999999999999998764
No 180
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-41 Score=334.80 Aligned_cols=200 Identities=27% Similarity=0.394 Sum_probs=171.6
Q ss_pred eEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---------C
Q 006548 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---------P 180 (641)
Q Consensus 110 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---------~ 180 (641)
||+++|.+ +.+ |+|+++++ |+++|+||||||||||+++|+|+++|++ |+|.++|.+... .
T Consensus 5 ~l~~~~~~-----~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~~~~~ 73 (214)
T cd03297 5 DIEKRLPD-----FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDG---GTIVLNGTVLFDSRKKINLPPQ 73 (214)
T ss_pred eeeEecCC-----eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEecccccchhhhhhH
Confidence 88888842 334 99999999 9999999999999999999999998875 999999986421 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
.+.++|++|++.+++.+|++||+.+..... .....+++++++++.+|+.+..++.+ ..||||||||++|||
T Consensus 74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~la~ 144 (214)
T cd03297 74 QRKIGLVFQQYALFPHLNVRENLAFGLKRK---RNREDRISVDELLDLLGLDHLLNRYP------AQLSGGEKQRVALAR 144 (214)
T ss_pred hhcEEEEecCCccCCCCCHHHHHHHHHhhC---CHHHHHHHHHHHHHHcCCHhHhhcCc------ccCCHHHHHHHHHHH
Confidence 246999999999999999999998764321 11123456889999999988777654 599999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|+++|++ +++.++||++++|++|+++..|
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 145 ALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999865 89999988887 4788899999999999998765
No 181
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-40 Score=342.16 Aligned_cols=224 Identities=22% Similarity=0.303 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~~--- 179 (641)
.++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.++++ ..+|+|.++|++...
T Consensus 7 ~l~~~nl~~~~~-----~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~ 81 (261)
T PRK14258 7 AIKVNNLSFYYD-----TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81 (261)
T ss_pred eEEEeeEEEEeC-----CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcccc
Confidence 589999999984 2369999999999999999999999999999999999998741 125999999987421
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
..+.++|++|+..+++ +|++||+.+...........+..+++.++++.+++.+..+... +..+..||||||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LSgGq~qr 158 (261)
T PRK14258 82 NLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKI--HKSALDLSGGQQQR 158 (261)
T ss_pred chHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHh--cCCcccCCHHHHHH
Confidence 1246999999988887 8999999876432211011123456788999999864322222 23556999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeC-----CeEEEE
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSN-----GNTLFF 329 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~-----G~iv~~ 329 (641)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|+|+++|++ .++.++||+|++|++ |++++.
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEEEEccCCCcCceEEEe
Confidence 9999999999999999999999999999999999999975 589999988887 578999999999999 999999
Q ss_pred eChhHHHH
Q 006548 330 GETLACLQ 337 (641)
Q Consensus 330 G~~~~~~~ 337 (641)
|+++++.+
T Consensus 238 ~~~~~~~~ 245 (261)
T PRK14258 238 GLTKKIFN 245 (261)
T ss_pred CCHHHHHh
Confidence 99988743
No 182
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-40 Score=343.93 Aligned_cols=222 Identities=23% Similarity=0.295 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~~--- 179 (641)
.++++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|++++.. ..+|+|.++|.+...
T Consensus 25 ~l~~~nl~~~~~-----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 25 ALEVRNLNLFYG-----DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred EEEEEEEEEEEC-----CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 689999999984 2469999999999999999999999999999999999987410 135999999987531
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
.++.++|++|++.+++. ||+||+.+.............+++++++++.+++.+...... +..+..||||||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~Gq~qr 176 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRL--HENAFGLSGGQQQR 176 (272)
T ss_pred CHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHh--hCCcccCCHHHHHH
Confidence 13469999999988876 999999876433211111123456888999999864221111 23556999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|+++|++ +++.++||++++|++|+++..|++++.
T Consensus 177 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 177 LVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNM-QQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999999976 68999988887 478899999999999999999988765
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 255 ~ 255 (272)
T PRK14236 255 F 255 (272)
T ss_pred h
Confidence 3
No 183
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=345.34 Aligned_cols=222 Identities=21% Similarity=0.313 Sum_probs=180.0
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~~-- 179 (641)
..++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|++++.. ..+|+|.++|.+...
T Consensus 12 ~~l~i~nl~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 12 IIISLQNVTISYG-----TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred ceEEEEeEEEEEC-----CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 3699999999984 3469999999999999999999999999999999999986310 135999999987421
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHH
Q 006548 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (641)
.++.++|++|++.+++ .||+||+.+.+..+. .....+++++++++.+++....+... +..+..|||||||
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~G~~q 161 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING--YTGDMDELVERSLRKAAVWDECKDKL--NESGYSLSGGQQQ 161 (269)
T ss_pred CCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC--CcHHHHHHHHHHHHHhCCcchhhhhh--CCCcccCCHHHHH
Confidence 1246999999998887 499999988654321 11123456778889888743211111 2355699999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC-----------
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN----------- 323 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~----------- 323 (641)
||+|||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||+++|++ +++.++||++++|++
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNM-QQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEecccccccccccc
Confidence 99999999999999999999999999999999999999964 68999988887 578899999999996
Q ss_pred CeEEEEeChhHHHH
Q 006548 324 GNTLFFGETLACLQ 337 (641)
Q Consensus 324 G~iv~~G~~~~~~~ 337 (641)
|++++.|+++++.+
T Consensus 240 g~~~~~~~~~~~~~ 253 (269)
T PRK14259 240 GYLVEFNETKKIFN 253 (269)
T ss_pred ceEEEeCCHHHHHh
Confidence 67899999988754
No 184
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-40 Score=340.07 Aligned_cols=222 Identities=20% Similarity=0.271 Sum_probs=180.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~--~~~~~G~I~~~G~~~~~--- 179 (641)
.+.++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|++...
T Consensus 6 ~i~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 80 (253)
T PRK14261 6 ILSTKNLNLWYG-----EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80 (253)
T ss_pred eEEEeeeEEEEC-----CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccccc
Confidence 589999999984 34699999999999999999999999999999999998753 11135999999987532
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
..+.++|++|++.+++. ||+||+.+....+........++.+.++++.+++.+...... +..+..||||||||
T Consensus 81 ~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~G~~qr 157 (253)
T PRK14261 81 DVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRL--HDSALSLSGGQQQR 157 (253)
T ss_pred chhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHh--hcChhhCCHHHHHH
Confidence 12469999999988874 999999887543211111123456788889988853221111 23556999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|+++..|+++++
T Consensus 158 v~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 158 LCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNM-QQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCH-HHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999976 58999988887 478889999999999999999998776
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 236 ~ 236 (253)
T PRK14261 236 F 236 (253)
T ss_pred H
Confidence 4
No 185
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-40 Score=339.48 Aligned_cols=222 Identities=21% Similarity=0.281 Sum_probs=178.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~--- 179 (641)
.++++||++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ |+...+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14255 5 IITSSDVHLFYG-----KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNE 79 (252)
T ss_pred eEEEEeEEEEEC-----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccc
Confidence 589999999984 2469999999999999999999999999999999999865 321135999999986521
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
..+.++|++|++.+++ .||+||+.+....+........++++.+.++.+++.+...... +..+..||||||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~--~~~~~~LS~Gq~qr 156 (252)
T PRK14255 80 DVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHL--HESALSLSGGQQQR 156 (252)
T ss_pred cHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHH--hcCcccCCHHHHHH
Confidence 1346999999998887 6999999876543211111112345677888887742211111 23456999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|+++|++ .++.++||+|++|++|+++..|++.+.
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 157 VCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSM-HQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999976 58999988887 478899999999999999999988776
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 235 ~ 235 (252)
T PRK14255 235 F 235 (252)
T ss_pred h
Confidence 4
No 186
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-40 Score=339.80 Aligned_cols=218 Identities=22% Similarity=0.288 Sum_probs=179.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~--- 179 (641)
.+.++|+++.|+ .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ |....+|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~ 78 (251)
T PRK14251 4 IISAKDVHLSYG-----NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78 (251)
T ss_pred eEEEEeeEEEEC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence 589999999984 2469999999999999999999999999999999999986 210135999999987521
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc----hHHhhhhcCCCCCCCCCHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~~LSGG 251 (641)
.++.++|++|++.+++ .||+||+.+.............++.++++++.+++. +..++ .+.+||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LS~G 151 (251)
T PRK14251 79 DLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDR------NAQAFSGG 151 (251)
T ss_pred hHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhcc------ChhhCCHH
Confidence 1346999999998886 799999987643221111111335678889999984 23333 45699999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.++||++++|++|+++..|+
T Consensus 152 q~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~ 229 (251)
T PRK14251 152 QQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNL-QQAGRISDQTAFLMNGDLIEAGP 229 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCH-HHHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999964 68999988887 47888999999999999999999
Q ss_pred hhHHH
Q 006548 332 TLACL 336 (641)
Q Consensus 332 ~~~~~ 336 (641)
++++.
T Consensus 230 ~~~~~ 234 (251)
T PRK14251 230 TEEMF 234 (251)
T ss_pred HHHHH
Confidence 87764
No 187
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-40 Score=342.52 Aligned_cols=222 Identities=22% Similarity=0.291 Sum_probs=181.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCC--ceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR--MYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~--~~G~I~~~G~~~~~--- 179 (641)
.++++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+|+|+|+++++.. .+|+|.++|++...
T Consensus 7 ~l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (259)
T PRK14260 7 AIKVKDLSFYYN-----TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI 81 (259)
T ss_pred eEEEEEEEEEEC-----CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc
Confidence 589999999984 24699999999999999999999999999999999999875311 35999999986521
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
..+.++|++|++.+++ +||+||+.+....+.........+.++++++.+++.+...... +..+..||||||||
T Consensus 82 ~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~G~~qr 158 (259)
T PRK14260 82 NINRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKL--NKSALGLSGGQQQR 158 (259)
T ss_pred chHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHh--cCCcccCCHHHHHH
Confidence 1246999999998887 8999999876543211111123456788899999853221111 23566999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe-----CCeEEEEe
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS-----NGNTLFFG 330 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~-----~G~iv~~G 330 (641)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|+ +|++++.|
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNM-QQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999975 58999988887 58889999999998 59999999
Q ss_pred ChhHHH
Q 006548 331 ETLACL 336 (641)
Q Consensus 331 ~~~~~~ 336 (641)
+++++.
T Consensus 237 ~~~~~~ 242 (259)
T PRK14260 237 VTTQIF 242 (259)
T ss_pred CHHHHh
Confidence 998764
No 188
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-40 Score=345.86 Aligned_cols=219 Identities=23% Similarity=0.299 Sum_probs=179.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~-- 179 (641)
..+.++||++.|. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+.+ |....+|+|.++|.+...
T Consensus 38 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~ 112 (286)
T PRK14275 38 PHVVAKNFSIYYG-----EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKF 112 (286)
T ss_pred eEEEEeeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcc
Confidence 4689999999984 2469999999999999999999999999999999999854 300024999999986421
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc----hHHhhhhcCCCCCCCCCH
Q 006548 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPC 250 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~~LSG 250 (641)
.++.++|++|++.+++. ||.||+.+.............++++.++++.+++. +..++ .+..|||
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~------~~~~LSg 185 (286)
T PRK14275 113 TDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDK------NALGLSG 185 (286)
T ss_pred cchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhC------ChhhCCH
Confidence 13469999999988875 99999988653321111112345677888998874 33343 4569999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 251 GerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ +++.++||++++|++|+++..|
T Consensus 186 Gq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~-~~~~~~~d~i~~L~~G~i~~~g 263 (286)
T PRK14275 186 GQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNM-QQASRVSDYTMFFYEGVLVEHA 263 (286)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999975 58999988887 4788899999999999999999
Q ss_pred ChhHHH
Q 006548 331 ETLACL 336 (641)
Q Consensus 331 ~~~~~~ 336 (641)
+++++.
T Consensus 264 ~~~~~~ 269 (286)
T PRK14275 264 PTAQLF 269 (286)
T ss_pred CHHHHH
Confidence 987764
No 189
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.5e-40 Score=339.98 Aligned_cols=216 Identities=19% Similarity=0.230 Sum_probs=180.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCC-ceeEEEECCEeCCC---C
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR-MYGEVFVNGAKSEM---P 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~-~~G~I~~~G~~~~~---~ 180 (641)
.++++|+++.+ + +.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|... .+|+|.++|++... .
T Consensus 4 ~l~~~~l~~~~-~-----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A-----QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALR 77 (254)
T ss_pred EEEEeCeEEEe-c-----cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccc
Confidence 58999999988 2 3599999999999999999999999999999999999987100 24999999987532 1
Q ss_pred CceEEEEcCCCc--cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch---HHhhhhcCCCCCCCCCHHHHHH
Q 006548 181 YGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD---YANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 181 ~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~ig~~~~~~~LSGGerqR 255 (641)
.+.++|++|++. +.+..|+.+++.+.+.... . ....+++.++++.++|.+ ..++ .+..||||||||
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~l~~~~l~~~~~~~~~------~~~~LS~Gq~qr 148 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALG-K--PADDATLTAALEAVGLENAARVLKL------YPFEMSGGMLQR 148 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcC-C--ChHHHHHHHHHHHcCCCChhhhhhc------CCcccCHHHHHH
Confidence 246999999974 4566899999876543221 1 123456889999999976 3455 445999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++ +++.++||++++|++|+++..|++++
T Consensus 149 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 227 (254)
T PRK10418 149 MMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVMSHGRIVEQGDVET 227 (254)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999764 89999988887 47888999999999999999999877
Q ss_pred HH
Q 006548 335 CL 336 (641)
Q Consensus 335 ~~ 336 (641)
+.
T Consensus 228 ~~ 229 (254)
T PRK10418 228 LF 229 (254)
T ss_pred Hh
Confidence 64
No 190
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.5e-41 Score=315.79 Aligned_cols=211 Identities=28% Similarity=0.324 Sum_probs=184.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~------ 178 (641)
.++++++++++... .....||++|++.+++||.+||+|||||||||||-+++|+..|++ |+|.+.|++..
T Consensus 6 ii~~~~l~ktvg~~-~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ss---GeV~l~G~~L~~ldEd~ 81 (228)
T COG4181 6 IIEVHHLSKTVGQG-EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSS---GEVRLLGQPLHKLDEDA 81 (228)
T ss_pred eeehhhhhhhhcCC-CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCC---ceEEEcCcchhhcCHHH
Confidence 57899999888543 245689999999999999999999999999999999999999876 99999998642
Q ss_pred ---CCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 179 ---MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 179 ---~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
.+.+++|||+|...+.|+||..||+..++.++-.. ..+......+.|+.+||.+..+. +|.+|||||+||
T Consensus 82 rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~-~~~~~~~A~~lL~~vGLg~Rl~H------yP~qLSGGEQQR 154 (228)
T COG4181 82 RAALRARHVGFVFQSFHLIPNLTALENVALPLELRGES-SADSRAGAKALLEAVGLGKRLTH------YPAQLSGGEQQR 154 (228)
T ss_pred HHHhhccceeEEEEeeeccccchhhhhccchhhhcCCc-cccHHHHHHHHHHHhCccccccc------CccccCchHHHH
Confidence 12367999999999999999999999988776421 12345568899999999877765 667999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (641)
|+||||++.+|+|||.||||-+||..+..+|.++|-.+.+ .|.|.|+++|+| .+..-|||.+-|.+|+++.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 9999999999999999999999999999999999999985 499999999998 4677899999999999874
No 191
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.5e-40 Score=339.63 Aligned_cols=217 Identities=22% Similarity=0.285 Sum_probs=179.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----CCC
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-----SEM 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~-----~~~ 179 (641)
.++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|.+ ...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 3 LLQVSGLSKSYG-----GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDH---GTATYIMRSGAELELYQ 74 (253)
T ss_pred eEEEeeeEEEeC-----CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEEeccccccccccc
Confidence 589999999984 2468999999999999999999999999999999999998875 999999865 321
Q ss_pred -C--------CceEEEEcCCCc--cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCC
Q 006548 180 -P--------YGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKG 247 (641)
Q Consensus 180 -~--------~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~ 247 (641)
. .+.++|++|++. +.+.+|+.||+.+..............+.++++++.+++. +..++. +..
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~------~~~ 148 (253)
T TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDL------PRA 148 (253)
T ss_pred CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcC------chh
Confidence 1 135899999974 4566799999965432111011112346788999999996 466664 459
Q ss_pred CCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 248 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|+++|++ .++..+||++++|++|++
T Consensus 149 LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~~~~d~~~~l~~G~i 227 (253)
T TIGR02323 149 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL-GVARLLAQRLLVMQQGRV 227 (253)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998754 89999988886 578889999999999999
Q ss_pred EEEeChhHHH
Q 006548 327 LFFGETLACL 336 (641)
Q Consensus 327 v~~G~~~~~~ 336 (641)
++.|+++++.
T Consensus 228 ~~~~~~~~~~ 237 (253)
T TIGR02323 228 VESGLTDQVL 237 (253)
T ss_pred EEECCHHHHh
Confidence 9999887654
No 192
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-40 Score=342.99 Aligned_cols=224 Identities=19% Similarity=0.228 Sum_probs=182.7
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~--~~~~G~I~~~G~~~~~-- 179 (641)
..+.++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. ...+|+|.++|.+...
T Consensus 20 ~~l~i~nl~~~~~-----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 94 (276)
T PRK14271 20 PAMAAVNLTLGFA-----GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR 94 (276)
T ss_pred cEEEEeeEEEEEC-----CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccc
Confidence 3689999999994 357999999999999999999999999999999999998752 0135999999987531
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
..+.++|++|++.+++ .||+||+.+...........+..+++.++++.+++.+..+... +..+..||||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l--~~~~~~LSgGq~qr 171 (276)
T PRK14271 95 DVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRL--SDSPFRLSGGQQQL 171 (276)
T ss_pred hhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHh--hCCcccCCHHHHHH
Confidence 1346999999998887 8999999876432211111123345678899999975432221 23456999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|+++..|+++++
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~ 249 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNL-AQAARISDRAALFFDGRLVEEGPTEQL 249 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999976 48999988887 478899999999999999999998876
Q ss_pred HH
Q 006548 336 LQ 337 (641)
Q Consensus 336 ~~ 337 (641)
.+
T Consensus 250 ~~ 251 (276)
T PRK14271 250 FS 251 (276)
T ss_pred Hh
Confidence 43
No 193
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-40 Score=339.76 Aligned_cols=221 Identities=19% Similarity=0.291 Sum_probs=179.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~---- 179 (641)
-+++||++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ |....+|+|.++|++...
T Consensus 6 ~~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 80 (251)
T PRK14244 6 ASVKNLNLWYG-----SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTN 80 (251)
T ss_pred EEeeeEEEEEC-----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccc
Confidence 47899999884 3479999999999999999999999999999999999976 211135999999986421
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcC-CCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
.++.++|++|++.+++. ||+||+.+....+. .......++.++++++.+||.+...+.. +..+.+||||||||
T Consensus 81 ~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~Gq~qr 157 (251)
T PRK14244 81 VVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRL--KDSAFELSGGQQQR 157 (251)
T ss_pred hHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHh--hcChhhCCHHHHHH
Confidence 13469999999988875 99999987643321 1111123456788999999965322211 22456999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++ +|+|||+++|++. ++.++||++++|++|++++.|+++++
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999996 4899999999874 78889999999999999999988765
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 236 ~ 236 (251)
T PRK14244 236 F 236 (251)
T ss_pred h
Confidence 4
No 194
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-41 Score=376.34 Aligned_cols=218 Identities=19% Similarity=0.319 Sum_probs=186.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++||++.|. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ ..+|+|.++|.+....
T Consensus 5 ~l~~~nl~~~~~-----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~ 78 (506)
T PRK13549 5 LLEMKNITKTFG-----GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRD 78 (506)
T ss_pred eEEEeeeEEEeC-----CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHH
Confidence 589999999984 346999999999999999999999999999999999999862 0249999999875321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcC-CC-ccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQL-PG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
++.++||+|++.+++.+||+||+.++...+. .. ...+..++++++++.+|+.+..++.+ .+|||||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGqkqrv 152 (506)
T PRK13549 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV------GNLGLGQQQLV 152 (506)
T ss_pred HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch------hhCCHHHHHHH
Confidence 2469999999999999999999987643221 10 11123456889999999987777755 49999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|++++.|+++++
T Consensus 153 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 153 EIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccC
Confidence 999999999999999999999999999999999999987899999988876 578899999999999999999998765
No 195
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=7e-41 Score=383.22 Aligned_cols=218 Identities=22% Similarity=0.348 Sum_probs=187.7
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..++++|++|+|.. ....+|+|+|++++|||.+||+|+||||||||+|+|+|+++|.. |+|++||.+...
T Consensus 470 g~I~~~nvsf~y~~---~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~---G~I~~dg~dl~~i~~~ 543 (709)
T COG2274 470 GEIEFENVSFRYGP---DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ---GRILLDGVDLNDIDLA 543 (709)
T ss_pred ceEEEEEEEEEeCC---CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEeHHhcCHH
Confidence 36999999999963 23479999999999999999999999999999999999999976 999999998532
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCC-----CCCCCHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~-----~~~LSGGer 253 (641)
.++++|||+||+.+|. .|++||+.++ .|. ...+.+.++++..|..+.....+.|.++ ..+||||||
T Consensus 544 ~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~----~p~---~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQr 615 (709)
T COG2274 544 SLRRQVGYVLQDPFLFS-GSIRENIALG----NPE---ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQR 615 (709)
T ss_pred HHHhheeEEcccchhhc-CcHHHHHhcC----CCC---CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHH
Confidence 2468999999999984 6999999763 222 2456678888888888777666554433 357999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
||++|||||+++|+||+||||||+||+.+.+.|.+.|+++.. |+|+|+++|+++ ..+.||||+||++|+++.+|+.+
T Consensus 616 QrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv~~gs~~ 692 (709)
T COG2274 616 QRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGSHE 692 (709)
T ss_pred HHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--HhhhccEEEEccCCceeccCCHH
Confidence 999999999999999999999999999999999999999874 689999999984 57889999999999999999999
Q ss_pred HHHHH
Q 006548 334 ACLQH 338 (641)
Q Consensus 334 ~~~~~ 338 (641)
++.+.
T Consensus 693 ell~~ 697 (709)
T COG2274 693 ELLAQ 697 (709)
T ss_pred HHHHh
Confidence 88753
No 196
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=7.1e-41 Score=375.99 Aligned_cols=216 Identities=20% Similarity=0.356 Sum_probs=186.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++||+++|. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+....
T Consensus 4 ~i~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 4 LLQLKGIDKAFP-----GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDA---GSILYLGKEVTFNGPKS 75 (501)
T ss_pred eEEEeeeEEEeC-----CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999999875 9999999875321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcC--CC-ccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQL--PG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~--~~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
.+.++|++|++.+++.+||+||+.++..... .. ...+.+++++++++.+||.+..++.++ .||||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~~qr 149 (501)
T PRK10762 76 SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG------ELSIGEQQM 149 (501)
T ss_pred HHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh------hCCHHHHHH
Confidence 2469999999999999999999987643210 10 111234568899999999887777554 999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ +++.++||+|++|++|+++..|+++++
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 9999999999999999999999999999999999999987799999988887 578899999999999999999988754
No 197
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.7e-40 Score=336.28 Aligned_cols=201 Identities=22% Similarity=0.272 Sum_probs=170.3
Q ss_pred eeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC----CCCceeEEEECCEeCCC---CCceEEEEcCCCc--cCC
Q 006548 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH----SARMYGEVFVNGAKSEM---PYGSYGFVERETT--LIG 195 (641)
Q Consensus 125 iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~----~~~~~G~I~~~G~~~~~---~~~~~~yv~Q~~~--l~~ 195 (641)
+|+|+|+++++||+++|+||||||||||+|+|+|+.+| ++ |+|.++|++... ..+.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~---G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTS---GEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccc---cEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57899999999999999999999999999999999987 54 999999987532 1246999999974 567
Q ss_pred CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc---hHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEe
Q 006548 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS---DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFID 272 (641)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLD 272 (641)
.+|++|++.+....... .....+++++++++.+++. +..++. +..|||||||||+|||||+.+|++||||
T Consensus 78 ~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGK-LSKQARALILEALEAVGLPDPEEVLKKY------PFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred ccCHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHcCCCchHHHHhCC------hhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 78999999775432211 1112345689999999997 455554 4599999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 273 EPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 273 EPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||+|||+.++..+.+.|++++++ |+|||+++|++ +++..+||++++|++|+++..|+++++.
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999864 89999988887 4788999999999999999999987764
No 198
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.7e-40 Score=373.61 Aligned_cols=212 Identities=21% Similarity=0.319 Sum_probs=186.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++||++.|. .+.+|+|+|+.+++||+++|+||||||||||||+|+|+++|++ |+|.++|.+....
T Consensus 11 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 82 (510)
T PRK15439 11 LLCARSISKQYS-----GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDS---GTLEIGGNPCARLTPAK 82 (510)
T ss_pred eEEEEeEEEEeC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999999875 9999999875321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
.+.++|++|++.+++.+||+||+.+... . ..+.+++++++++.+||.+..++.++ +|||||||||+|
T Consensus 83 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~----~-~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~~qrv~l 151 (510)
T PRK15439 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLP----K-RQASMQKMKQLLAALGCQLDLDSSAG------SLEVADRQIVEI 151 (510)
T ss_pred HHhCCEEEEeccCccCCCCcHHHHhhcccc----c-chHHHHHHHHHHHHcCCCccccCChh------hCCHHHHHHHHH
Confidence 2359999999999999999999987531 1 11234678899999999887777554 999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ +++.++||++++|++|++++.|++++..
T Consensus 152 a~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 152 LRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 9999999999999999999999999999999999988899999988886 4788999999999999999999987653
No 199
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=3e-40 Score=342.06 Aligned_cols=222 Identities=23% Similarity=0.236 Sum_probs=183.8
Q ss_pred eEEEEeEEEEEecc----cccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 006548 105 SVVWKDLTVTIKGK----RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~----~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~- 179 (641)
.++++||++.+... ....+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~s---G~i~~~g~~~~~~ 79 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ---GNVSWRGEPLAKL 79 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccc
Confidence 47899999998520 0013579999999999999999999999999999999999998865 999999986431
Q ss_pred -------CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCC
Q 006548 180 -------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (641)
Q Consensus 180 -------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LS 249 (641)
..+.++|++|+. .+++..|+.|++.+...............+++++++.+|+. +..++. +..||
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~~LS 153 (268)
T PRK10419 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKR------PPQLS 153 (268)
T ss_pred ChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCC------CccCC
Confidence 124699999997 46678999999876532111111112345689999999996 566664 45999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 006548 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (641)
Q Consensus 250 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (641)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|+++|++ +++.++||++++|++|++++
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999999865 89999988887 47888999999999999999
Q ss_pred EeChhHHH
Q 006548 329 FGETLACL 336 (641)
Q Consensus 329 ~G~~~~~~ 336 (641)
.|++++..
T Consensus 233 ~g~~~~~~ 240 (268)
T PRK10419 233 TQPVGDKL 240 (268)
T ss_pred eCChhhcc
Confidence 99987754
No 200
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-40 Score=341.38 Aligned_cols=222 Identities=19% Similarity=0.274 Sum_probs=177.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~--- 179 (641)
.++++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++ |....+|+|.++|.+...
T Consensus 24 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 24 VFDTQNLNLWYG-----EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred EEEEeeeEEEEC-----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 589999999984 3469999999999999999999999999999999999986 211135999999987521
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
..+.++|++|++.+++ .||+||+.++............++.+.++++.+++.+-..... +..+..||||||||
T Consensus 99 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~~LSgGe~qr 175 (271)
T PRK14238 99 SVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRL--HDNAYGLSGGQQQR 175 (271)
T ss_pred cHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHH--hcCcccCCHHHHHH
Confidence 1346999999998887 5999999886543211111112345677777776532111111 23556999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|+++..|+++++
T Consensus 176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNM-QQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999976 68999988886 478899999999999999999998765
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 254 ~ 254 (271)
T PRK14238 254 F 254 (271)
T ss_pred H
Confidence 3
No 201
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.6e-42 Score=319.12 Aligned_cols=218 Identities=25% Similarity=0.294 Sum_probs=189.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||.++| +...+|++||+..+.|+++.|+|.|||||||+|+||.=+..|+. |.|.+||+.+..
T Consensus 6 ~l~v~dlHK~~-----G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~---G~I~v~geei~~k~~~~ 77 (256)
T COG4598 6 ALEVEDLHKRY-----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSA---GSIRVNGEEIRLKRDKD 77 (256)
T ss_pred ceehhHHHhhc-----ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCC---ceEEECCeEEEeeeCCC
Confidence 58889998888 45679999999999999999999999999999999999999876 999999975311
Q ss_pred ------C-------CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCC
Q 006548 180 ------P-------YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246 (641)
Q Consensus 180 ------~-------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 246 (641)
. +.+.++|+|+..|..++||.||+..+..--+.....+..++.+..|..+|+.+..+. ||.
T Consensus 78 G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~------YP~ 151 (256)
T COG4598 78 GQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADA------YPA 151 (256)
T ss_pred CCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhc------Ccc
Confidence 0 124799999999999999999997654322222223355678889999999887775 667
Q ss_pred CCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 247 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
.|||||+||++|||||+.+|+++++|||||+|||.-.-++++.+++|+++|+|.++++|.. ..+.+...+|+.|++|.|
T Consensus 152 ~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM-~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 152 HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEM-GFARDVSSHVIFLHQGKI 230 (256)
T ss_pred ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeeh-hHHHhhhhheEEeeccee
Confidence 9999999999999999999999999999999999999999999999999999999988876 588899999999999999
Q ss_pred EEEeChhHHHH
Q 006548 327 LFFGETLACLQ 337 (641)
Q Consensus 327 v~~G~~~~~~~ 337 (641)
-+.|+|++++.
T Consensus 231 EE~G~P~qvf~ 241 (256)
T COG4598 231 EEEGPPEQVFG 241 (256)
T ss_pred cccCChHHHhc
Confidence 99999998753
No 202
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=3.4e-40 Score=331.76 Aligned_cols=209 Identities=28% Similarity=0.403 Sum_probs=177.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++|+++.+..+. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~~~-~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 2 ISIRNLNHYYGHGS-LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQE---GSLKVLGQELYGASEKEL 77 (220)
T ss_pred EEEEEEEEEccCCC-cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEhHhcCHhHH
Confidence 68999999885321 12579999999999999999999999999999999999998875 999999987531
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
..+.++|++|++.+++.+|+.||+.+...........+..++++++++.+||.+..++.+ +.||||||||++
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~lS~G~~qrv~ 151 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP------HNLSGGQKQRVA 151 (220)
T ss_pred HHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh------hhCCHHHHHHHH
Confidence 125699999999999989999999886543211111223457899999999988887754 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .++|+|+++|++. +.++||++++|++|++
T Consensus 152 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 152 IARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999986 4899999999874 4589999999999986
No 203
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-40 Score=349.02 Aligned_cols=226 Identities=19% Similarity=0.235 Sum_probs=184.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~--~~~~G~I~~~G~~~~~-- 179 (641)
..++++|+++.|.. ..+.+|+|+|+++++||++||+|+||||||||+++|+|+.++. ...+|+|.++|.++..
T Consensus 79 ~~i~~~nls~~y~~---~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 79 NVFEIRNFNFWYMN---RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred ceEEEEeeEEEecC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 46899999999953 2346999999999999999999999999999999999998631 0135999999998631
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHH
Q 006548 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (641)
.++.++|++|++.+++ .|++||+.|+............++.++++++.++|.+..+..+ +..+..|||||||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~--~~~~~~LSgGqkq 232 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDL--DKAGNALSGGQQQ 232 (329)
T ss_pred cchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhh--hCCcccCCHHHHH
Confidence 1357999999998885 7999999986432211111112344678899998854333333 2466799999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|+|+++|++ ..+.++||||++|++|++++.|++++
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l-~~i~~~~Driivl~~G~i~e~g~~~~ 310 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSM-AQAQRISDETVFFYQGWIEEAGETKT 310 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 68999988887 47888999999999999999999998
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+..
T Consensus 311 l~~ 313 (329)
T PRK14257 311 IFI 313 (329)
T ss_pred Hhc
Confidence 753
No 204
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-40 Score=378.63 Aligned_cols=223 Identities=21% Similarity=0.223 Sum_probs=187.9
Q ss_pred ceEEEEeEEEEEeccc------ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 006548 104 ASVVWKDLTVTIKGKR------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~------~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~ 177 (641)
..++++||++.|...+ ...+.+|+||||.+++||+++|+|+||||||||+|+|+|+++|++ |+|.++|++.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~---G~I~~~g~~i 388 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQG---GEIIFNGQRI 388 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---cEEEECCEEC
Confidence 3689999999985211 012469999999999999999999999999999999999998875 9999999865
Q ss_pred CC--------CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCC
Q 006548 178 EM--------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMK 246 (641)
Q Consensus 178 ~~--------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~ 246 (641)
.. .++.++||+|++ .+++.+||.||+.+...........+.++++.++++.+||. +..++. ++
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~------~~ 462 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRY------PH 462 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCC------cc
Confidence 31 124699999996 58899999999987654321101112346788999999995 566664 45
Q ss_pred CCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 247 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |.|||+++|+. +.+.++||+|++|++|+
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl-~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM-AVVERISHRVAVMYLGQ 541 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999865 89999988876 57889999999999999
Q ss_pred EEEEeChhHHH
Q 006548 326 TLFFGETLACL 336 (641)
Q Consensus 326 iv~~G~~~~~~ 336 (641)
+++.|++++++
T Consensus 542 iv~~g~~~~i~ 552 (623)
T PRK10261 542 IVEIGPRRAVF 552 (623)
T ss_pred EEEecCHHHHh
Confidence 99999998875
No 205
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-40 Score=341.65 Aligned_cols=217 Identities=22% Similarity=0.287 Sum_probs=179.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~~-- 179 (641)
..++++||++.|. .+.+|+|+|+.+++||+++|+||||||||||+++|+|++++.. ..+|+|.++|.+...
T Consensus 38 ~~l~i~~l~~~~~-----~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~ 112 (285)
T PRK14254 38 TVIEARDLNVFYG-----DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD 112 (285)
T ss_pred ceEEEEEEEEEEC-----CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 4689999999984 2469999999999999999999999999999999999986310 124999999987421
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch----HHhhhhcCCCCCCCCCH
Q 006548 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD----YANKLIGGHCYMKGLPC 250 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ig~~~~~~~LSG 250 (641)
.++.++|++|+..+++. ||+||+.+....... . ....++++++++.++|.+ ..++ .+.+|||
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~-~-~~~~~~~~~~l~~~~l~~~i~~~~~~------~~~~LSg 183 (285)
T PRK14254 113 VDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGY-D-GDIDERVEESLRRAALWDEVKDQLDS------SGLDLSG 183 (285)
T ss_pred cchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCC-c-HHHHHHHHHHHHHcCCCchhHHHHhC------CcccCCH
Confidence 13569999999988875 999999876543211 1 123456889999999853 3343 4569999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEE-EEeCCeEEEE
Q 006548 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC-LLSNGNTLFF 329 (641)
Q Consensus 251 GerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~-vL~~G~iv~~ 329 (641)
||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ .|||+++|++ .++.++|||++ +|++|+++..
T Consensus 184 Ge~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~-~~i~~~~dri~v~l~~G~i~~~ 261 (285)
T PRK14254 184 GQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNM-QQAARISDKTAVFLTGGELVEF 261 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCH-HHHHhhcCEEEEEeeCCEEEEe
Confidence 9999999999999999999999999999999999999999999864 7999988887 57888999975 5799999999
Q ss_pred eChhHHH
Q 006548 330 GETLACL 336 (641)
Q Consensus 330 G~~~~~~ 336 (641)
|+++++.
T Consensus 262 g~~~~~~ 268 (285)
T PRK14254 262 DDTDKIF 268 (285)
T ss_pred CCHHHHH
Confidence 9887653
No 206
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=3e-40 Score=335.68 Aligned_cols=215 Identities=25% Similarity=0.354 Sum_probs=172.0
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-----~ 180 (641)
++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~---~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (237)
T cd03252 1 ITFEHVRFRYKP---DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPEN---GRVLVDGHDLALADPAWL 74 (237)
T ss_pred CEEEEEEEecCC---CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECCeehHhcCHHHH
Confidence 368999998842 13469999999999999999999999999999999999998875 999999986421 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcC-----CCCCCCCCHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRR 255 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerqR 255 (641)
++.++|++|++.+++ .||+||+.+... .. ....+.+.++..++.+..+....+ +..+.+||||||||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~----~~---~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qr 146 (237)
T cd03252 75 RRQVGVVLQENVLFN-RSIRDNIALADP----GM---SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQR 146 (237)
T ss_pred hhcEEEEcCCchhcc-chHHHHhhccCC----CC---CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHH
Confidence 346999999988775 699999976321 11 112233444555554443322100 22457999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++. ++ ..||++++|++|++++.|+++++
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~~~~~~~ 223 (237)
T cd03252 147 IAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEKGRIVEQGSHDEL 223 (237)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999974 899999999985 55 46999999999999999998776
Q ss_pred HH
Q 006548 336 LQ 337 (641)
Q Consensus 336 ~~ 337 (641)
.+
T Consensus 224 ~~ 225 (237)
T cd03252 224 LA 225 (237)
T ss_pred Hh
Confidence 54
No 207
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-40 Score=314.72 Aligned_cols=215 Identities=28% Similarity=0.374 Sum_probs=189.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 184 (641)
.+..++++.+|.++ ...+|+|+|+.+.+||.++++||||||||||||+++|+.+|.. |+|.+||+++.-+-..-
T Consensus 3 ~l~~~~~sl~y~g~---~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~---G~i~l~~r~i~gPgaer 76 (259)
T COG4525 3 MLNVSHLSLSYEGK---PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR---GSIQLNGRRIEGPGAER 76 (259)
T ss_pred eeehhheEEecCCc---chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCccc---ceEEECCEeccCCCccc
Confidence 46778899999653 2569999999999999999999999999999999999999976 99999999887666667
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHh
Q 006548 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~ 264 (641)
|.|+|++.++|.+||.||+.|+.+++--. ...+.+++.+.+..+||.+..++.+ .+|||||||||.|||||+.
T Consensus 77 gvVFQ~~~LlPWl~~~dNvafgL~l~Gi~-k~~R~~~a~q~l~~VgL~~~~~~~i------~qLSGGmrQRvGiARALa~ 149 (259)
T COG4525 77 GVVFQNEALLPWLNVIDNVAFGLQLRGIE-KAQRREIAHQMLALVGLEGAEHKYI------WQLSGGMRQRVGIARALAV 149 (259)
T ss_pred eeEeccCccchhhHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhCcccccccce------EeecchHHHHHHHHHHhhc
Confidence 99999999999999999999998876322 2246678899999999999887754 5999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEe--CCeEEEEeChh
Q 006548 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLS--NGNTLFFGETL 333 (641)
Q Consensus 265 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~--~G~iv~~G~~~ 333 (641)
+|++|+||||+++||.-+++++.++|-++. +.|+.++++||+. +|..-+++|+++|+ .|+|+..-+++
T Consensus 150 eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~i-eEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 150 EPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDI-EEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred CcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999999999999999999999987 5699999988876 57778999999998 58999877765
No 208
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=2e-40 Score=329.61 Aligned_cols=197 Identities=24% Similarity=0.306 Sum_probs=167.7
Q ss_pred EEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---C-----
Q 006548 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---M----- 179 (641)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~---~----- 179 (641)
++||++.++ ++.+|+|+|+.+++||+++|+||||||||||+++|+|+++|++ |+|.++|.+.. .
T Consensus 1 i~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~~~ 72 (206)
T TIGR03608 1 LKNISKKFG-----DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDS---GQVYLNGKETPPLNSKKASK 72 (206)
T ss_pred CcceEEEEC-----CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEccccchhhHHH
Confidence 368888874 3469999999999999999999999999999999999998875 99999998732 1
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
..+.++|++|++.+++.+|++||+.+...... .......++++++++.+|+.+..++.+ .+||||||||++|
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~lS~G~~qr~~l 145 (206)
T TIGR03608 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKK-LSKKEKREKKKEALEKVGLNLKLKQKI------YELSGGEQQRVAL 145 (206)
T ss_pred HHHhCeeEEecchhhccCCcHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCchhhhcCCh------hhCCHHHHHHHHH
Confidence 12469999999999999999999988654321 111124557889999999988877754 4999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (641)
||||+.+|++|||||||+|||+.++..+.+.|+++.++|.|+|+++|++. . .+.||++++|
T Consensus 146 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~-~~~~d~i~~l 206 (206)
T TIGR03608 146 ARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE-V-AKQADRVIEL 206 (206)
T ss_pred HHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H-HhhcCEEEeC
Confidence 99999999999999999999999999999999999877899999999874 4 4689999875
No 209
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-40 Score=373.46 Aligned_cols=216 Identities=19% Similarity=0.332 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|.+....
T Consensus 5 ~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 5 YISMAGIGKSFG-----PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTK---GTITINNINYNKLDHKL 76 (510)
T ss_pred eEEEeeeEEEcC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCc---cEEEECCEECCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999998875 9999999875321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhc--CCC----ccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHH
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQ--LPG----FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~--~~~----~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe 252 (641)
.+.++|++|++.+++.+||+||+.++.... ... ...+..++++++++.+||.+..++.++ +|||||
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~------~LSgG~ 150 (510)
T PRK09700 77 AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA------NLSISH 150 (510)
T ss_pred HHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh------hCCHHH
Confidence 246999999999999999999998753210 001 011234568899999999877777554 999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++ .++..+||++++|++|++++.|++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~ 229 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMV 229 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEeeecch
Confidence 9999999999999999999999999999999999999999988899999988876 578899999999999999999998
Q ss_pred hHH
Q 006548 333 LAC 335 (641)
Q Consensus 333 ~~~ 335 (641)
+++
T Consensus 230 ~~~ 232 (510)
T PRK09700 230 SDV 232 (510)
T ss_pred hhC
Confidence 765
No 210
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-40 Score=360.31 Aligned_cols=216 Identities=25% Similarity=0.349 Sum_probs=185.9
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 006548 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~--- 179 (641)
+..+..+|+++.|++ ++++++|+|+++++|+.+||+|+||||||||+++|+|+.+|+. |+|.+||.+...
T Consensus 318 ~~ei~~~~l~~~y~~----g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~---G~I~vng~~l~~l~~ 390 (559)
T COG4988 318 PIEISLENLSFRYPD----GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQ---GEIRVNGIDLRDLSP 390 (559)
T ss_pred CceeeecceEEecCC----CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCC---ceEEECCccccccCH
Confidence 345667799999963 3489999999999999999999999999999999999999875 999999987532
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCC-----CCCCCCCHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGE 252 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGe 252 (641)
.+++++||+|++.+++. |++||+.++. + ...++.+.++++..||.+..+. ++|. +..++|||||
T Consensus 391 ~~~~k~i~~v~Q~p~lf~g-TireNi~l~~----~---~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ 461 (559)
T COG4988 391 EAWRKQISWVSQNPYLFAG-TIRENILLAR----P---DASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQ 461 (559)
T ss_pred HHHHhHeeeeCCCCccccc-cHHHHhhccC----C---cCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHH
Confidence 24789999999999865 9999997741 1 1346779999999999888776 3322 2446799999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
+|||++||||+.+++++++||||++||.++.+.|++.|.+++++ +|+++++|++. ...-+|+|++|++|+++..|..
T Consensus 462 ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl~--~~~~~D~I~vld~G~l~~~g~~ 538 (559)
T COG4988 462 AQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRLE--DAADADRIVVLDNGRLVEQGTH 538 (559)
T ss_pred HHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcChH--HHhcCCEEEEecCCceeccCCH
Confidence 99999999999999999999999999999999999999999875 88999899874 4667999999999999999999
Q ss_pred hHHHH
Q 006548 333 LACLQ 337 (641)
Q Consensus 333 ~~~~~ 337 (641)
+++.+
T Consensus 539 ~~L~~ 543 (559)
T COG4988 539 EELSE 543 (559)
T ss_pred HHHhh
Confidence 88754
No 211
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-40 Score=338.61 Aligned_cols=222 Identities=21% Similarity=0.282 Sum_probs=180.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC------EeC
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG------AKS 177 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G------~~~ 177 (641)
..+.++|+++.+. ++.+|+|+|+.+.+||+++|+||||||||||+++|+|+.+|+. |+|.++| .+.
T Consensus 9 ~~i~~~~~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~---G~v~~~G~~~~~g~~~ 80 (257)
T PRK14246 9 DVFNISRLYLYIN-----DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYD---SKIKVDGKVLYFGKDI 80 (257)
T ss_pred hheeeeeEEEecC-----CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---CceeEcCEEEECCccc
Confidence 4689999999984 4579999999999999999999999999999999999998864 5555554 432
Q ss_pred CC-----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHH
Q 006548 178 EM-----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 178 ~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe 252 (641)
.. .++.++|++|++.+++.+||+||+.+...........+..++++++++.+++.+...... +..+..|||||
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~LS~G~ 158 (257)
T PRK14246 81 FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRL--NSPASQLSGGQ 158 (257)
T ss_pred ccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhh--cCCcccCCHHH
Confidence 21 134689999999999999999999886433211111123456889999999964211111 22456999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ ..+.++||++++|++|+++..|++
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~-~~~~~~~d~v~~l~~g~i~~~g~~ 236 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNP-QQVARVADYVAFLYNGELVEWGSS 236 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999965 68999998887 478899999999999999999998
Q ss_pred hHHHH
Q 006548 333 LACLQ 337 (641)
Q Consensus 333 ~~~~~ 337 (641)
++..+
T Consensus 237 ~~~~~ 241 (257)
T PRK14246 237 NEIFT 241 (257)
T ss_pred HHHHh
Confidence 77643
No 212
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.3e-39 Score=334.09 Aligned_cols=216 Identities=18% Similarity=0.262 Sum_probs=178.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR--LPHSARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~--~~~~~~~~G~I~~~G~~~~~--- 179 (641)
.++++||++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+ ++|. +|+|.++|.+...
T Consensus 7 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 7 ILEIKNLHASVN-----ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL---EGDILFKGESILDLEP 78 (252)
T ss_pred eEEEEeEEEEeC-----CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCC---CceEEECCEEcccCCh
Confidence 589999999984 24699999999999999999999999999999999998 4565 4999999987432
Q ss_pred -CC-c-eEEEEcCCCccCCCCCHHHHHHHHHHhcC-----CC-ccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCC
Q 006548 180 -PY-G-SYGFVERETTLIGSLTVREYLYYSALLQL-----PG-FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (641)
Q Consensus 180 -~~-~-~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-----~~-~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LS 249 (641)
.. + .++|++|++.+++.+|+.+++.+...... .. ...+..+++.++++.+|+. +..++.++ .+||
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~LS 153 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN-----EGFS 153 (252)
T ss_pred hhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc-----cCCC
Confidence 11 2 47899999999999999999976543211 00 0001235678899999997 45555432 2599
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhc-CCEEEEEeCCeEEE
Q 006548 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLF 328 (641)
Q Consensus 250 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv~ 328 (641)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+... ||++++|++|++++
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~G~i~~ 232 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQNGKIIK 232 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999877999999989874 56665 89999999999999
Q ss_pred EeChhH
Q 006548 329 FGETLA 334 (641)
Q Consensus 329 ~G~~~~ 334 (641)
.|+++.
T Consensus 233 ~~~~~~ 238 (252)
T CHL00131 233 TGDAEL 238 (252)
T ss_pred ecChhh
Confidence 998874
No 213
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-39 Score=339.00 Aligned_cols=221 Identities=18% Similarity=0.229 Sum_probs=179.8
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~--~~~~G~I~~~G~~~~~-- 179 (641)
..+.++||++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+.++. ...+|+|.++|++...
T Consensus 19 ~~l~~~nl~~~~~-----~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~ 93 (274)
T PRK14265 19 SVFEVEGVKVFYG-----GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93 (274)
T ss_pred ceEEEeeEEEEeC-----CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence 4689999999984 346999999999999999999999999999999999997531 0125999999986521
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHH
Q 006548 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (641)
..+.++|++|+..+++. ||.||+.+....+. .....++.++++++.+++.+...... +..+..|||||||
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LSgGq~q 168 (274)
T PRK14265 94 INSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG--YKGNLDELVEDSLRRAAIWEEVKDKL--KEKGTALSGGQQQ 168 (274)
T ss_pred chhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC--chHHHHHHHHHHHHHcccchhhHHHh--cCCcccCCHHHHH
Confidence 12469999999988874 99999987643221 11122345677888888743222111 2356799999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe---------CCe
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS---------NGN 325 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~---------~G~ 325 (641)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|+ +|+
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~~~~~~~~~~G~ 246 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNM-QQASRVADWTAFFNTEIDEYGKRRGK 246 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEecccccccccCce
Confidence 99999999999999999999999999999999999999975 68999988887 47889999999998 899
Q ss_pred EEEEeChhHHH
Q 006548 326 TLFFGETLACL 336 (641)
Q Consensus 326 iv~~G~~~~~~ 336 (641)
+++.|+++++.
T Consensus 247 ~~~~g~~~~~~ 257 (274)
T PRK14265 247 LVEFSPTEQMF 257 (274)
T ss_pred EEEeCCHHHHH
Confidence 99999998874
No 214
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=336.11 Aligned_cols=222 Identities=21% Similarity=0.238 Sum_probs=182.8
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~~-- 179 (641)
..+.++++++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 7 ~~~~~~~~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 81 (261)
T PRK14263 7 IVMDCKLDKIFYG-----NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKG 81 (261)
T ss_pred ceEEEEeEEEEeC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccc
Confidence 4688999998873 3569999999999999999999999999999999999987621 135999999987521
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHH
Q 006548 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (641)
..+.++|++|++.++ .+|+.||+.+....... .....++++++++.++|.+..+... +..++.|||||||
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~i~~~~--~~~~~~LS~G~~q 156 (261)
T PRK14263 82 VDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRY--KGDLGDRVKHALQGAALWDEVKDKL--KVSGLSLSGGQQQ 156 (261)
T ss_pred cchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCc--hHHHHHHHHHHHHHcCCchhhhhhh--hCCcccCCHHHHH
Confidence 124699999999887 59999999887543311 1123457889999999865433222 2356799999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe--------CCeE
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS--------NGNT 326 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~--------~G~i 326 (641)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++ +++|+|+++|++ .++.++||++++|+ +|++
T Consensus 157 rv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~-~~i~~~~d~v~~l~~~~~~~~~~G~i 234 (261)
T PRK14263 157 RLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNM-QQAIRVADTTAFFSVDISQGTRTGYL 234 (261)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHHhCCEEEEEecccccccCCceE
Confidence 9999999999999999999999999999999999999996 478999988887 47889999999996 8999
Q ss_pred EEEeChhHHHH
Q 006548 327 LFFGETLACLQ 337 (641)
Q Consensus 327 v~~G~~~~~~~ 337 (641)
+..|+++++.+
T Consensus 235 ~~~g~~~~~~~ 245 (261)
T PRK14263 235 VEMGPTAQIFQ 245 (261)
T ss_pred EEeCCHHHHHh
Confidence 99999887643
No 215
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.7e-40 Score=377.26 Aligned_cols=214 Identities=23% Similarity=0.333 Sum_probs=182.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.+.+ ++++|+|+|++++|||.+||+||||||||||+++|+|++ |.+ |+|.+||.+...
T Consensus 349 ~i~~~~vsf~~~~----~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~---G~I~i~g~~i~~~~~~~ 420 (588)
T PRK11174 349 TIEAEDLEILSPD----GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ---GSLKINGIELRELDPES 420 (588)
T ss_pred eEEEEeeEEeccC----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC---cEEEECCEecccCCHHH
Confidence 5999999976532 357999999999999999999999999999999999999 754 999999987542
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCC-----CCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~-----~~~LSGGerq 254 (641)
.++.++||+|++.+|. .|++||+.++. +. ..+++++++++..++.+..++++.|.+. ...|||||||
T Consensus 421 lr~~i~~v~Q~~~LF~-~TI~eNI~~g~----~~---~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQ 492 (588)
T PRK11174 421 WRKHLSWVGQNPQLPH-GTLRDNVLLGN----PD---ASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQ 492 (588)
T ss_pred HHhheEEecCCCcCCC-cCHHHHhhcCC----CC---CCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHH
Confidence 1357999999999986 59999997741 11 2456788999999998876665544332 3569999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+++|+|||||||||+||+.++..+.+.|+++. +++|+|+++|+++ ..+.||+|++|++|++++.|+.++
T Consensus 493 RialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~e 569 (588)
T PRK11174 493 RLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAE 569 (588)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHH
Confidence 9999999999999999999999999999999999999885 5789999999984 456799999999999999999887
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+.+
T Consensus 570 L~~ 572 (588)
T PRK11174 570 LSQ 572 (588)
T ss_pred HHh
Confidence 754
No 216
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-39 Score=333.07 Aligned_cols=222 Identities=20% Similarity=0.273 Sum_probs=181.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~--- 179 (641)
.++++||++.+. .+.+|+|+|+++.+||+++|+||||||||||+++|+|+.+ |....+|+|.++|.+...
T Consensus 3 ~l~~~~v~~~~~-----~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 77 (250)
T PRK14266 3 RIEVENLNTYFD-----DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77 (250)
T ss_pred EEEEEeEEEEeC-----CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc
Confidence 478999999884 3469999999999999999999999999999999999864 210125999999987532
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
..+.++|++|++.+++. |++||+.+.............++++.++++.+++.+...... +..+..||||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~Gq~qr 154 (250)
T PRK14266 78 DVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKL--DKSALGLSGGQQQR 154 (250)
T ss_pred cHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHH--hCCcccCCHHHHHH
Confidence 13469999999988875 999999876432211111123456888999999864332222 23566999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.+.||++++|++|++++.|+++++
T Consensus 155 v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~-~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNM-QQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCH-HHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999964 78999988887 478899999999999999999998876
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 233 ~ 233 (250)
T PRK14266 233 F 233 (250)
T ss_pred H
Confidence 4
No 217
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-39 Score=336.17 Aligned_cols=221 Identities=21% Similarity=0.269 Sum_probs=179.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~--~~~~~G~I~~~G~~~~~--- 179 (641)
.++++||++.|. .+.+|+|+|+++++||+++|+|+||||||||+|+|+|+.++ ....+|+|.++|++...
T Consensus 10 ~l~i~~v~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 10 VLRTENLNVYYG-----SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred EEEEeeeEEEEC-----CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence 589999999984 24699999999999999999999999999999999998753 10135999999986521
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
..+.++|++|++.+++ .||+||+.+...... ......++++++++.+++.+..+... +..+..||||||||
T Consensus 85 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LSgGq~qr 159 (264)
T PRK14243 85 DPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING--YKGDMDELVERSLRQAALWDEVKDKL--KQSGLSLSGGQQQR 159 (264)
T ss_pred ChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC--cchHHHHHHHHHHHHhCchhhHHHHh--cCCcccCCHHHHHH
Confidence 1246999999998887 599999987653321 11123455777888888854222211 23566999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe---------CCeE
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS---------NGNT 326 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~---------~G~i 326 (641)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|+ +|++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~~~~g~i 237 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNM-QQAARVSDMTAFFNVELTEGGGRYGYL 237 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccccccccCceE
Confidence 9999999999999999999999999999999999999976 58999988887 58899999999998 8999
Q ss_pred EEEeChhHHHH
Q 006548 327 LFFGETLACLQ 337 (641)
Q Consensus 327 v~~G~~~~~~~ 337 (641)
++.|+++++.+
T Consensus 238 ~~~~~~~~~~~ 248 (264)
T PRK14243 238 VEFDRTEKIFN 248 (264)
T ss_pred EEeCCHHHHHh
Confidence 99999887743
No 218
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-40 Score=340.05 Aligned_cols=217 Identities=20% Similarity=0.345 Sum_probs=179.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--Cc
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--YG 182 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--~~ 182 (641)
.++++||++.|++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++.... .+
T Consensus 6 ~l~~~~l~~~~~~----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (272)
T PRK15056 6 GIVVNDVTVTWRN----GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS---GKISILGQPTRQALQKN 78 (272)
T ss_pred eEEEEeEEEEecC----CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEhHHhhccc
Confidence 5899999999842 3469999999999999999999999999999999999998875 9999999875321 23
Q ss_pred eEEEEcCCCccC--CCCCHHHHHHHHHHhcC---CCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 183 SYGFVERETTLI--GSLTVREYLYYSALLQL---PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 183 ~~~yv~Q~~~l~--~~lTV~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
.++|++|++.+. ...+++|++.++..... .......+++++++++.+||.+..++.+ ..||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgG~~qrv~ 152 (272)
T PRK15056 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI------GELSGGQKKRVF 152 (272)
T ss_pred eEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc------ccCCHHHHHHHH
Confidence 599999997652 23578998865321100 0001123456788999999988877755 499999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||+++++ +|++++.|+++++.
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 99999999999999999999999999999999999987799999988887 4788999999877 89999999887653
No 219
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-40 Score=377.35 Aligned_cols=221 Identities=21% Similarity=0.232 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~------ 178 (641)
.++++||++.|...+ ....+|+||||++++||++||+||||||||||+|+|+|+++|++ |+|.++|....
T Consensus 12 ~l~v~~l~~~y~~~~-~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~---G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 12 VLAVENLNIAFMQEQ-QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAG---GLVQCDKMLLRRRSRQV 87 (623)
T ss_pred eEEEeceEEEecCCC-CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC---eEEEECCEEeccccccc
Confidence 689999999995321 23479999999999999999999999999999999999998875 99999886320
Q ss_pred -------------CCCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch---HHhhhhc
Q 006548 179 -------------MPYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD---YANKLIG 240 (641)
Q Consensus 179 -------------~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~ig 240 (641)
...+.+|||+|++ .+++.+||.||+.++..........+.++++.++++.+||.+ ..++
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--- 164 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSR--- 164 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhC---
Confidence 0113699999997 688899999999987654211111224567889999999963 3454
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEE
Q 006548 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRIC 319 (641)
Q Consensus 241 ~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~ 319 (641)
++.+|||||||||+||+||+.+|+||||||||+|||+.++..+.++|++++++ |+|||+++|+. ..+.++||||+
T Consensus 165 ---~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl-~~~~~~adri~ 240 (623)
T PRK10261 165 ---YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM-GVVAEIADRVL 240 (623)
T ss_pred ---CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEE
Confidence 45699999999999999999999999999999999999999999999999865 89999988776 57889999999
Q ss_pred EEeCCeEEEEeChhHHH
Q 006548 320 LLSNGNTLFFGETLACL 336 (641)
Q Consensus 320 vL~~G~iv~~G~~~~~~ 336 (641)
+|++|++++.|+++++.
T Consensus 241 vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 241 VMYQGEAVETGSVEQIF 257 (623)
T ss_pred EeeCCeecccCCHHHhh
Confidence 99999999999988764
No 220
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=7e-40 Score=329.13 Aligned_cols=209 Identities=26% Similarity=0.389 Sum_probs=174.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.+.+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~---~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~ 75 (220)
T cd03245 2 RIEFRNVSFSYPN---QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTS---GSVLLDGTDIRQLDPAD 75 (220)
T ss_pred eEEEEEEEEEcCC---CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CeEEECCEEhHHCCHHH
Confidence 3789999998842 12469999999999999999999999999999999999998875 999999986421
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCC-----CCCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerq 254 (641)
..+.++|++|++.+++ .||.||+.+.. .. ...+.+.++++.+++.+..++.+.+. ..+..|||||||
T Consensus 76 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~----~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~q 147 (220)
T cd03245 76 LRRNIGYVPQDVTLFY-GTLRDNITLGA----PL---ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQ 147 (220)
T ss_pred HHhhEEEeCCCCcccc-chHHHHhhcCC----CC---CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHH
Confidence 1246999999998886 69999996531 11 12345678899999988887754211 134689999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
|++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ +|||+++|++. .+ ++||++++|++|++++.|
T Consensus 148 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 148 AVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999999999999999999764 89999999875 44 799999999999998754
No 221
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=7.2e-40 Score=333.08 Aligned_cols=217 Identities=23% Similarity=0.337 Sum_probs=175.0
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P---- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-~---- 180 (641)
++++|+++.+.+. .++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|.+... .
T Consensus 1 l~i~~l~~~~~~~--~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 75 (238)
T cd03249 1 IEFKNVSFRYPSR--PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTS---GEILLDGVDIRDLNLRWL 75 (238)
T ss_pred CeEEEEEEecCCC--CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCC---CEEEECCEehhhcCHHHH
Confidence 3689999988431 12469999999999999999999999999999999999998875 999999986431 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcC-----CCCCCCCCHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRR 255 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerqR 255 (641)
.+.++|++|++.+++ .||+||+.+.... . ..+.+.+.++..++.+..+....+ +..++.||||||||
T Consensus 76 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~----~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 147 (238)
T cd03249 76 RSQIGLVSQEPVLFD-GTIAENIRYGKPD----A---TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQR 147 (238)
T ss_pred HhhEEEECCchhhhh-hhHHHHhhccCCC----C---CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHH
Confidence 246999999998876 6999999764211 0 112344555666665554433210 23467999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
|+|||+|+.+|++|||||||+|||+.++..+.+.|++++ +|+|||+++|++. ++. .||++++|++|++++.|+.+++
T Consensus 148 v~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~~-~~d~v~~l~~G~i~~~~~~~~~ 224 (238)
T cd03249 148 IAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TIR-NADLIAVLQNGQVVEQGTHDEL 224 (238)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999997 7899999999874 565 8999999999999999988776
Q ss_pred HHH
Q 006548 336 LQH 338 (641)
Q Consensus 336 ~~~ 338 (641)
.+.
T Consensus 225 ~~~ 227 (238)
T cd03249 225 MAQ 227 (238)
T ss_pred hhc
Confidence 543
No 222
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.2e-38 Score=368.39 Aligned_cols=218 Identities=26% Similarity=0.399 Sum_probs=182.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..++++||+++|+.+ +..+||+|+|+.+++|+.+||+|||||||||++++|.+++.|++ |+|++||.+.+.
T Consensus 349 g~ief~nV~FsYPsR--pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~---G~V~idG~di~~~~~~ 423 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSR--PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTS---GEVLIDGEDIRNLNLK 423 (1228)
T ss_pred cceEEEEEEecCCCC--CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---ceEEEcCccchhcchH
Confidence 469999999999754 46689999999999999999999999999999999999999976 999999987542
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGer 253 (641)
.+.++|.|.|+|.+| ..|++||+.|+. + ...+++++++.+..+..++..+++.|.+ ...+||||||
T Consensus 424 ~lr~~iglV~QePvlF-~~tI~eNI~~G~----~---dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQK 495 (1228)
T KOG0055|consen 424 WLRSQIGLVSQEPVLF-ATTIRENIRYGK----P---DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQK 495 (1228)
T ss_pred HHHhhcCeeeechhhh-cccHHHHHhcCC----C---cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHH
Confidence 235799999999887 579999998741 1 1234567777777666555444433222 2335999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
||++|||||+.+|+|||||||||+||+.+...|.+.|++.. +|+|.|+++|..+ .+.. +|+|++|++|+||+.|..+
T Consensus 496 QRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS-tIrn-aD~I~v~~~G~IvE~G~h~ 572 (1228)
T KOG0055|consen 496 QRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS-TIRN-ADKIAVMEEGKIVEQGTHD 572 (1228)
T ss_pred HHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-hhhc-cCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999998876 4677777789875 6655 9999999999999999999
Q ss_pred HHHH
Q 006548 334 ACLQ 337 (641)
Q Consensus 334 ~~~~ 337 (641)
|+++
T Consensus 573 ELi~ 576 (1228)
T KOG0055|consen 573 ELIA 576 (1228)
T ss_pred HHHh
Confidence 9876
No 223
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-39 Score=323.79 Aligned_cols=197 Identities=22% Similarity=0.281 Sum_probs=170.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 181 (641)
++++|+++++. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..
T Consensus 2 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 2 LEARNLACERD-----ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDA---GEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred eEEEEEEEEEC-----CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEcccchHHhh
Confidence 67899999984 3469999999999999999999999999999999999999875 999999987532 13
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++|++.+++.+||.||+.+...... . ..+++++++++.+||.+..++.+ ..||||||||++||||
T Consensus 74 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~--~--~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G~~qrl~la~a 143 (204)
T PRK13538 74 QDLLYLGHQPGIKTELTALENLRFYQRLHG--P--GDDEALWEALAQVGLAGFEDVPV------RQLSAGQQRRVALARL 143 (204)
T ss_pred hheEEeCCccccCcCCcHHHHHHHHHHhcC--c--cHHHHHHHHHHHcCCHHHhhCCh------hhcCHHHHHHHHHHHH
Confidence 468999999999999999999987653321 1 23456889999999988777754 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (641)
|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++. ++.+..+|++++
T Consensus 144 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 144 WLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 99999999999999999999999999999999877899999999874 677777788776
No 224
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=6.9e-40 Score=381.23 Aligned_cols=213 Identities=25% Similarity=0.311 Sum_probs=183.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||+++|++ ..+.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 451 ~I~~~nvsf~Y~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg~~i~~~~~~~ 524 (686)
T TIGR03797 451 AIEVDRVTFRYRP---DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES---GSVFYDGQDLAGLDVQA 524 (686)
T ss_pred eEEEEEEEEEcCC---CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEEcCcCCHHH
Confidence 5999999999953 23579999999999999999999999999999999999999975 999999998643
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.++.++||+|++.+|+ .|++||+.++. + ..++++.++++..|+.+..++.+.|.+ ....|||||||
T Consensus 525 lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~----~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQ 595 (686)
T TIGR03797 525 VRRQLGVVLQNGRLMS-GSIFENIAGGA----P----LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQ 595 (686)
T ss_pred HHhccEEEccCCccCc-ccHHHHHhcCC----C----CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH
Confidence 1357999999999986 59999997641 1 235668899999999887766554332 23679999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+++|++||||||||+||+.+++++.+.|+++ ++|+|+++|++. ..+.||+|++|++|++++.|+.++
T Consensus 596 RialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~G~~~~ 670 (686)
T TIGR03797 596 RLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQGTYDE 670 (686)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999886 579999999984 456799999999999999999888
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+.+
T Consensus 671 Ll~ 673 (686)
T TIGR03797 671 LMA 673 (686)
T ss_pred HHh
Confidence 754
No 225
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.9e-40 Score=330.40 Aligned_cols=215 Identities=24% Similarity=0.341 Sum_probs=176.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.+.+ .+.+|+|+|+++++||+++|+|||||||||||++|+|+++|.+ |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (229)
T cd03254 2 EIEFENVNFSYDE----KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQK---GQILIDGIDIRDISRKS 74 (229)
T ss_pred eEEEEEEEEecCC----CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECCEeHHHcCHHH
Confidence 4789999998842 2359999999999999999999999999999999999999875 999999986431
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcC-----CCCCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerq 254 (641)
..+.++|++|++.+++. ||+||+.+... . .....+++.++.+++.+..++...+ +..+..|||||||
T Consensus 75 ~~~~i~~~~q~~~~~~~-tv~~~~~~~~~----~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~ 146 (229)
T cd03254 75 LRSMIGVVLQDTFLFSG-TIMENIRLGRP----N---ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQ 146 (229)
T ss_pred HhhhEEEecCCchhhhh-HHHHHHhccCC----C---CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHH
Confidence 12469999999988875 99999976421 1 1223456667777776665543210 1245799999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
||+|||+|+.+|++|||||||+|||+.++..+++.|++++ +|+|||+++|++. ++. .||++++|++|++++.|+.++
T Consensus 147 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~~~~ 223 (229)
T cd03254 147 LLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TIK-NADKILVLDDGKIIEEGTHDE 223 (229)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HHh-hCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999999999996 5899999999885 554 599999999999999988776
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
..+
T Consensus 224 ~~~ 226 (229)
T cd03254 224 LLA 226 (229)
T ss_pred HHh
Confidence 543
No 226
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.6e-39 Score=320.69 Aligned_cols=187 Identities=46% Similarity=0.738 Sum_probs=163.2
Q ss_pred eEEEEeEEEEEeccc-ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC--
Q 006548 105 SVVWKDLTVTIKGKR-RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~-~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~--~~~~~~~G~I~~~G~~~~~-- 179 (641)
.++++||++.|++.+ ...+.+|+|+|+++++||+++|+||||||||||+++|+|+. +|.. |+|.++|++...
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~---G~i~~~g~~~~~~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVS---GEVLINGRPLDKRS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCc---eEEEECCEeCchHh
Confidence 589999999995310 01256999999999999999999999999999999999999 7764 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
..+.++|++|++.+++.+|++||+.+.... ..||||||||++||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~------------------------------------~~LS~G~~qrv~la 123 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAKL------------------------------------RGLSGGERKRVSIA 123 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHHh------------------------------------ccCCHHHHHHHHHH
Confidence 235699999999999999999999653210 06999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
|||+.+|+++||||||+|||+.++..+.+.|++++++|+|+|+++|++..++.++||++++|++|++++.|
T Consensus 124 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 124 LELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998779999999999865788899999999999998764
No 227
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-39 Score=320.51 Aligned_cols=187 Identities=41% Similarity=0.668 Sum_probs=161.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC-C
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-P 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~--~~~~~~G~I~~~G~~~~~-~ 180 (641)
..++++|+++.|++.+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ ++ +|+|.++|++... .
T Consensus 2 ~~l~~~~l~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~---~G~i~~~g~~~~~~~ 77 (192)
T cd03232 2 SVLTWKNLNYTVPVKG-GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI---TGEILINGRPLDKNF 77 (192)
T ss_pred cEEEEeeeEEEecCCC-CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCc---ceEEEECCEehHHHh
Confidence 3589999999995311 12469999999999999999999999999999999999863 44 4999999987532 2
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
.+.++|++|++.+++.+||+||+.+.... + .||||||||++|||
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-----------------~-------------------~LSgGe~qrv~la~ 121 (192)
T cd03232 78 QRSTGYVEQQDVHSPNLTVREALRFSALL-----------------R-------------------GLSVEQRKRLTIGV 121 (192)
T ss_pred hhceEEecccCccccCCcHHHHHHHHHHH-----------------h-------------------cCCHHHhHHHHHHH
Confidence 35699999999999999999999764210 0 69999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC-CeEEEEe
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTLFFG 330 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~-G~iv~~G 330 (641)
||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+.||++++|++ |++++.|
T Consensus 122 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 122 ELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999999877999999999985457789999999998 9999865
No 228
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-40 Score=365.53 Aligned_cols=216 Identities=25% Similarity=0.357 Sum_probs=182.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 180 (641)
..++|+||+|.|+.+ +...+|+|+||+++|||++||+||||+||||+.++|-.++.|++ |+|.+||.++...
T Consensus 464 G~IeF~~VsFaYP~R--p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pts---G~IllDG~~i~~~~~~ 538 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTR--PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTS---GRILLDGVPISDINHK 538 (716)
T ss_pred ceEEEEEeeeecCCC--CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---CeEEECCeehhhcCHH
Confidence 469999999999853 56789999999999999999999999999999999999999986 9999999986431
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-------hHHhhhhcCCCCCCCCCHH
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-------DYANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~ig~~~~~~~LSGG 251 (641)
++++|+|.||+.||. -||+|||.|+.. ...+++++++.+..+-. +-.|+.+| +...+||||
T Consensus 539 ~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-------~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VG--EkG~qLSGG 608 (716)
T KOG0058|consen 539 YLRRKIGLVGQEPVLFS-GSIRENIAYGLD-------NATDEEIEAAAKMANAHEFITNFPDGYNTVVG--EKGSQLSGG 608 (716)
T ss_pred HHHHHeeeeeccceeec-ccHHHHHhcCCC-------CCCHHHHHHHHHHhChHHHHHhCccccccccC--Cccccccch
Confidence 367999999999995 599999998642 12344455555554443 34566664 344579999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
||||++|||||++||+||||||.||+||+.+...|.+.|.++.+ ++|||++.|+.+ ..+.+|+|+++++|++++.|+
T Consensus 609 QKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 609 QKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred HHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcCCeEEeccc
Confidence 99999999999999999999999999999999999999999875 489999888764 457899999999999999998
Q ss_pred hhHHHH
Q 006548 332 TLACLQ 337 (641)
Q Consensus 332 ~~~~~~ 337 (641)
-+|+++
T Consensus 686 h~eLl~ 691 (716)
T KOG0058|consen 686 HDELLS 691 (716)
T ss_pred HHHHhh
Confidence 877764
No 229
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=7.9e-40 Score=367.56 Aligned_cols=217 Identities=20% Similarity=0.354 Sum_probs=182.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----- 180 (641)
++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|+ ..+|+|.++|++....
T Consensus 2 l~i~~l~~~~~-----~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 2 LEMKGIVKTFG-----GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred EEEEeEEEEeC-----CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHH
Confidence 68999999984 346999999999999999999999999999999999998862 0249999999875321
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCC---CccchHHHHHHHHHHHcCCchHH-hhhhcCCCCCCCCCHHHHHH
Q 006548 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYA-NKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~-~~~ig~~~~~~~LSGGerqR 255 (641)
.+.++|++|++.+++.+||+||+.++...... ....+..++++++++.++|.+.. ++.+ .+||||||||
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgG~~qr 149 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV------GDYGGGQQQL 149 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch------hhCCHHHHHH
Confidence 24699999999999999999999876432211 01112345688999999997654 3434 4999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|+. +++.++||+|++|++|+++..|++++.
T Consensus 150 v~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 150 VEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999999999999988899999988876 578899999999999999999987653
No 230
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1e-39 Score=368.39 Aligned_cols=222 Identities=23% Similarity=0.297 Sum_probs=184.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEe---CC-
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN-GAK---SE- 178 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~-G~~---~~- 178 (641)
..++++||++.|.+.+...+.+|+|+|+.+++||+++|+||||||||||+|+|+|+++|++ |+|.++ |.+ ..
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~~~g~~~~~~~~ 354 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS---GEVNVRVGDEWVDMTK 354 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEEecCCccccccc
Confidence 3689999999985211123469999999999999999999999999999999999998875 999996 532 11
Q ss_pred C-------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-----HHhhhhcCCCCCC
Q 006548 179 M-------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-----YANKLIGGHCYMK 246 (641)
Q Consensus 179 ~-------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~ig~~~~~~ 246 (641)
. .++.++|++|++.+++.+||.||+.+...+..+ ....+++++++++.+||.+ ..++. +.
T Consensus 355 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~~------~~ 426 (520)
T TIGR03269 355 PGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELP--DELARMKAVITLKMVGFDEEKAEEILDKY------PD 426 (520)
T ss_pred cchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCC--HHHHHHHHHHHHHhCCCCCccchhhhhCC------hh
Confidence 0 124599999999899999999999875432211 1123456889999999964 45554 45
Q ss_pred CCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 247 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |.|||+++|+. .++.++||++++|++|+
T Consensus 427 ~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~ 505 (520)
T TIGR03269 427 ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDM-DFVLDVCDRAALMRDGK 505 (520)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999865 89999988887 57889999999999999
Q ss_pred EEEEeChhHHHH
Q 006548 326 TLFFGETLACLQ 337 (641)
Q Consensus 326 iv~~G~~~~~~~ 337 (641)
++..|+++++.+
T Consensus 506 i~~~g~~~~~~~ 517 (520)
T TIGR03269 506 IVKIGDPEEIVE 517 (520)
T ss_pred EEEECCHHHHHh
Confidence 999999887654
No 231
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-40 Score=367.54 Aligned_cols=212 Identities=17% Similarity=0.298 Sum_probs=181.0
Q ss_pred EeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC------Cc
Q 006548 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP------YG 182 (641)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~------~~ 182 (641)
+|+++.|. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++.... ++
T Consensus 2 ~nl~~~~~-----~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~~ 73 (491)
T PRK10982 2 SNISKSFP-----GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDS---GSILFQGKEIDFKSSKEALEN 73 (491)
T ss_pred CceEEEeC-----CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCc---eEEEECCEECCCCCHHHHHhC
Confidence 67888884 3469999999999999999999999999999999999998875 9999999875321 24
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCC--CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLP--GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~--~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
.++|++|+..+++.+||+||+.++...... ....+..++++++++.+++.+..++.+ .+|||||||||+|||
T Consensus 74 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qrv~lA~ 147 (491)
T PRK10982 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV------ATLSVSQMQMIEIAK 147 (491)
T ss_pred CEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch------hhCCHHHHHHHHHHH
Confidence 699999999899999999999875321101 011123456889999999987777654 499999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ +++.++||++++|++|+++..|++++.
T Consensus 148 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 148 AFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999999999999999999999999988899999988876 578899999999999999999987664
No 232
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=8e-40 Score=374.10 Aligned_cols=217 Identities=22% Similarity=0.290 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|++ ..+.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 341 ~i~~~~vsf~y~~---~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~---G~I~i~g~~i~~~~~~~ 414 (582)
T PRK11176 341 DIEFRNVTFTYPG---KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDE---GEILLDGHDLRDYTLAS 414 (582)
T ss_pred eEEEEEEEEecCC---CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCC---ceEEECCEEhhhcCHHH
Confidence 5999999999953 23579999999999999999999999999999999999999975 999999987542
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.++.++||+|++.+|+ .|++||+.++. +. ...+++++++++.+|+.+..+++..|.+ ....|||||||
T Consensus 415 ~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~--~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQ 487 (582)
T PRK11176 415 LRNQVALVSQNVHLFN-DTIANNIAYAR----TE--QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQ 487 (582)
T ss_pred HHhhceEEccCceeec-chHHHHHhcCC----CC--CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHH
Confidence 1357999999999986 59999997631 11 1245678899999998877665544332 23679999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+++|+||+||||||+||+.++..+++.|+++. +++|+|+++|++. ..+.||+|++|++|++++.|+.++
T Consensus 488 Ri~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~ 564 (582)
T PRK11176 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAE 564 (582)
T ss_pred HHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999985 4689999999983 567799999999999999999887
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+.+
T Consensus 565 l~~ 567 (582)
T PRK11176 565 LLA 567 (582)
T ss_pred HHh
Confidence 754
No 233
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-39 Score=333.93 Aligned_cols=223 Identities=20% Similarity=0.233 Sum_probs=179.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSE--- 178 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~--- 178 (641)
..++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|.. ..+|+|.++|.+..
T Consensus 15 ~~l~~~~l~~~~~-----~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 15 QKSEVNKLNFYYG-----GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred ceEEEEEEEEEEC-----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 3589999999984 3469999999999999999999999999999999999987521 13599999987532
Q ss_pred ------CCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHH
Q 006548 179 ------MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 179 ------~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe 252 (641)
...+.++|++|++.+++. ||+||+.+.............+++++++++.+++.+...... +..+..|||||
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~G~ 166 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRL--GDLAFNLSGGQ 166 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHH--hCCcccCCHHH
Confidence 113468999999998875 999999876432211111112456788888888753211111 22456999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|+++|++ +++.++||++++|++|+++..|+.
T Consensus 167 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~-~~~~~~~d~i~~l~~G~i~~~g~~ 244 (265)
T PRK14252 167 QQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNM-QQAARVSDYTAYMYMGELIEFGAT 244 (265)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999975 68999988876 578899999999999999999998
Q ss_pred hHHH
Q 006548 333 LACL 336 (641)
Q Consensus 333 ~~~~ 336 (641)
++..
T Consensus 245 ~~~~ 248 (265)
T PRK14252 245 DTIF 248 (265)
T ss_pred HHHH
Confidence 7754
No 234
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.3e-39 Score=324.43 Aligned_cols=201 Identities=20% Similarity=0.281 Sum_probs=174.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CC
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PY 181 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~--~~ 181 (641)
..+.++|+++.+. .+.+++++|+++++||+++|+|+||||||||+++|+|+++|+. |+|.++|++... ..
T Consensus 10 ~~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~i~~~~~~ 81 (214)
T PRK13543 10 PLLAAHALAFSRN-----EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVES---GQIQIDGKTATRGDRS 81 (214)
T ss_pred ceEEEeeEEEecC-----CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCC---eeEEECCEEccchhhh
Confidence 3689999999884 3469999999999999999999999999999999999999875 999999987532 12
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++|++.+++.+|+.||+.+....+. . ...+.++++++.++|.+..++.+ ..||||||||++|||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~--~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~lara 151 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLHG--R--RAKQMPGSALAIVGLAGYEDTLV------RQLSAGQKKRLALARL 151 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhcC--C--cHHHHHHHHHHHcCChhhccCCh------hhCCHHHHHHHHHHHH
Confidence 458999999999998999999987653321 1 23456788999999988777755 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
++.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++ .++.++||++++++.
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 152 WLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhhhhhcceEEEEee
Confidence 9999999999999999999999999999999988899999988887 588999999999864
No 235
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.6e-39 Score=327.98 Aligned_cols=207 Identities=19% Similarity=0.312 Sum_probs=172.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+...
T Consensus 7 ~i~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 7 LLQLQNVGYLAG-----DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTS---GTLLFEGEDISTLKPEI 78 (225)
T ss_pred eEEEeccEEeeC-----CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CeEEECCEEcCcCCHHH
Confidence 589999999884 3469999999999999999999999999999999999998875 999999986532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
..+.++|++|++.+++ .||+||+.+....... ....++++++++.+++. ...++. +..|||||||||+|
T Consensus 79 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~------~~~LS~G~~qrv~l 148 (225)
T PRK10247 79 YRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---QPDPAIFLDDLERFALPDTILTKN------IAELSGGEKQRISL 148 (225)
T ss_pred HHhccEEEeccccccc-ccHHHHHHhHHhhcCC---ChHHHHHHHHHHHcCCChHHhcCC------cccCCHHHHHHHHH
Confidence 1246899999988887 5999999875433211 12345678999999996 456654 45999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEe-CCeEEEEeC
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLS-NGNTLFFGE 331 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~-~G~iv~~G~ 331 (641)
||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. ++ ..||++++|+ ++..+.+|.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 149 IRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHhhhh
Confidence 99999999999999999999999999999999999864 899999888874 55 4699999995 555555553
No 236
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-39 Score=365.92 Aligned_cols=213 Identities=22% Similarity=0.346 Sum_probs=182.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++||++.|. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++....
T Consensus 4 ~l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~i~~~~~~~ 75 (501)
T PRK11288 4 YLSFDGIGKTFP-----GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDA---GSILIDGQEMRFASTTA 75 (501)
T ss_pred eEEEeeeEEEEC-----CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEECCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999998875 9999999875321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCC--ccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPG--FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
++.++|++|++.+++.+||.||+.++....... ...+.+++++++++.+||.+..++.+ .+|||||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qrv 149 (501)
T PRK11288 76 ALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL------KYLSIGQRQMV 149 (501)
T ss_pred HHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch------hhCCHHHHHHH
Confidence 246999999999999999999998753211111 11123457889999999986666644 49999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|+++..++.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRM-EEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999999999999988899999988887 478899999999999999887654
No 237
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-40 Score=332.94 Aligned_cols=215 Identities=27% Similarity=0.361 Sum_probs=171.0
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P---- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-~---- 180 (641)
++++|+++.++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 74 (234)
T cd03251 1 VEFKNVTFRYPGD---GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDS---GRILIDGHDVRDYTLASL 74 (234)
T ss_pred CEEEEEEEEeCCC---CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCC---CEEEECCEEhhhCCHHHH
Confidence 3689999988531 2369999999999999999999999999999999999999875 999999986432 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhc-----CCCCCCCCCHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG-----GHCYMKGLPCGERRR 255 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig-----~~~~~~~LSGGerqR 255 (641)
.+.++|++|++.+++ .||+||+.+... .. ....+++.++..++.+..+.... -+..+..||||||||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~enl~~~~~----~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qr 146 (234)
T cd03251 75 RRQIGLVSQDVFLFN-DTVAENIAYGRP----GA---TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQR 146 (234)
T ss_pred HhhEEEeCCCCeecc-ccHHHHhhccCC----CC---CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHH
Confidence 246999999998886 699999976421 10 11223333444444433322210 022456999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++. ++.. ||++++|++|+++..|+++++
T Consensus 147 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~v~~l~~G~i~~~~~~~~~ 223 (234)
T cd03251 147 IAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TIEN-ADRIVVLEDGKIVERGTHEEL 223 (234)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHhh-CCEEEEecCCeEeeeCCHHHH
Confidence 9999999999999999999999999999999999999974 889999999885 5655 999999999999999988776
Q ss_pred HH
Q 006548 336 LQ 337 (641)
Q Consensus 336 ~~ 337 (641)
.+
T Consensus 224 ~~ 225 (234)
T cd03251 224 LA 225 (234)
T ss_pred HH
Confidence 54
No 238
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.5e-39 Score=367.63 Aligned_cols=222 Identities=23% Similarity=0.292 Sum_probs=184.8
Q ss_pred ceEEEEeEEEEEeccc------ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 006548 104 ASVVWKDLTVTIKGKR------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~------~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~ 177 (641)
..++++||++.|.... ...+.+|+|+|+++++||+++|+||||||||||+|+|+|+++ . +|+|+++|++.
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~G~i~~~g~~i 349 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---QGEIWFDGQPL 349 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---CcEEEECCEEc
Confidence 3589999999985211 013579999999999999999999999999999999999985 4 39999999864
Q ss_pred CC--------CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCC-CccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCC
Q 006548 178 EM--------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYM 245 (641)
Q Consensus 178 ~~--------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~ 245 (641)
.. .++.++|++|+. .+++.+||+||+.++...+.. ....+.+++++++++.+||. +..++.+
T Consensus 350 ~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------ 423 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYP------ 423 (529)
T ss_pred cccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCC------
Confidence 21 124589999996 488889999999886543211 11112346788999999997 4666644
Q ss_pred CCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 006548 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNG 324 (641)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (641)
..|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |+|||+++|+. .++.++||++++|++|
T Consensus 424 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~-~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL-HVVRALCHQVIVLRQG 502 (529)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhcCeEEEEECC
Confidence 599999999999999999999999999999999999999999999999865 89999988876 5788999999999999
Q ss_pred eEEEEeChhHHH
Q 006548 325 NTLFFGETLACL 336 (641)
Q Consensus 325 ~iv~~G~~~~~~ 336 (641)
+++..|+++++.
T Consensus 503 ~i~~~~~~~~~~ 514 (529)
T PRK15134 503 EVVEQGDCERVF 514 (529)
T ss_pred EEEEEcCHHHHh
Confidence 999999987764
No 239
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.7e-39 Score=372.10 Aligned_cols=214 Identities=21% Similarity=0.288 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.|++ ++++|+|+|+++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 340 ~i~~~~v~f~y~~----~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~idg~~i~~~~~~~ 412 (592)
T PRK10790 340 RIDIDNVSFAYRD----DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTE---GEIRLDGRPLSSLSHSV 412 (592)
T ss_pred eEEEEEEEEEeCC----CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---ceEEECCEEhhhCCHHH
Confidence 5899999999952 2469999999999999999999999999999999999999975 999999987542
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCC-----CCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~-----~~~LSGGerq 254 (641)
.++.++||+|++.+|+. |++||+.++. + ..+++++++++.+|+.+..++++.|.+. ...|||||||
T Consensus 413 l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~----~----~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQ 483 (592)
T PRK10790 413 LRQGVAMVQQDPVVLAD-TFLANVTLGR----D----ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQ 483 (592)
T ss_pred HHhheEEEccCCccccc-hHHHHHHhCC----C----CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH
Confidence 23679999999999975 9999998741 1 2456689999999999887776544332 3569999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+.+|+||+||||||+||+.+++.+.+.|+++.+ ++|+|+++|++. ....||+|++|++|+++..|+.++
T Consensus 484 RialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~~ 560 (592)
T PRK10790 484 LLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQQ 560 (592)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999864 689999999984 456799999999999999999988
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+.+
T Consensus 561 L~~ 563 (592)
T PRK10790 561 LLA 563 (592)
T ss_pred HHh
Confidence 754
No 240
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1e-39 Score=329.27 Aligned_cols=202 Identities=24% Similarity=0.263 Sum_probs=169.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 185 (641)
+.++++++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|++....
T Consensus 23 l~~~~~~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~----- 89 (224)
T cd03220 23 LGILGRKGEVG-----EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDS---GTVTVRGRVSSLL----- 89 (224)
T ss_pred hhhhhhhhhcC-----CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEchhh-----
Confidence 67788887773 4579999999999999999999999999999999999998875 9999999864211
Q ss_pred EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhC
Q 006548 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (641)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (641)
.+...+.+.+||+||+.+....... .....+++++++++.+++.+..++.++ +||||||||++|||+|+.+
T Consensus 90 --~~~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~~qrv~laral~~~ 160 (224)
T cd03220 90 --GLGGGFNPELTGRENIYLNGRLLGL-SRKEIDEKIDEIIEFSELGDFIDLPVK------TYSSGMKARLAFAIATALE 160 (224)
T ss_pred --cccccCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhhhhCChh------hCCHHHHHHHHHHHHHhcC
Confidence 1123455779999999876543211 112234567889999999888877554 9999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 266 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|
T Consensus 161 p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 161 PDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999987789999988887 4788899999999999998765
No 241
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=3e-39 Score=331.32 Aligned_cols=202 Identities=25% Similarity=0.404 Sum_probs=174.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 184 (641)
.++++||++.|. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|. ..+
T Consensus 4 ~l~~~~l~~~~~-----~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~---G~i~~~~~------~~i 69 (251)
T PRK09544 4 LVSLENVSVSFG-----QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDE---GVIKRNGK------LRI 69 (251)
T ss_pred EEEEeceEEEEC-----CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCc------cCE
Confidence 589999999984 3469999999999999999999999999999999999998875 99999872 359
Q ss_pred EEEcCCCccCCC--CCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 185 GFVERETTLIGS--LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 185 ~yv~Q~~~l~~~--lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
+|++|++.+++. .|+.+++.+. +. ...+++.++++.+||.+..++.+ ..|||||||||+|||||
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~-----~~---~~~~~~~~~l~~~gl~~~~~~~~------~~LSgGq~qrv~laral 135 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR-----PG---TKKEDILPALKRVQAGHLIDAPM------QKLSGGETQRVLLARAL 135 (251)
T ss_pred EEeccccccccccChhHHHHHhcc-----cc---ccHHHHHHHHHHcCChHHHhCCh------hhCCHHHHHHHHHHHHH
Confidence 999999887765 3777776431 11 12345788999999998887755 49999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.+.||++++|++ +++..|+++++.
T Consensus 136 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~-~~i~~~~d~i~~l~~-~i~~~g~~~~~~ 208 (251)
T PRK09544 136 LNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL-HLVMAKTDEVLCLNH-HICCSGTPEVVS 208 (251)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEECC-ceEeeCCHHHHh
Confidence 9999999999999999999999999999999865 89999988887 578899999999964 799999887754
No 242
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.5e-39 Score=365.84 Aligned_cols=224 Identities=22% Similarity=0.260 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~--~~~~G~I~~~G~~~~~--- 179 (641)
.++++|+++.|.... ..+.+|+|+|+++++||++||+||||||||||+|+|+|+++|. ...+|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~~~~-~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 5 LLAIENLSVAFRQQQ-TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred eEEEeceEEEecCCC-CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 589999999995211 1257999999999999999999999999999999999999862 0125999999987421
Q ss_pred ------CCceEEEEcCCCc--cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch---HHhhhhcCCCCCCCC
Q 006548 180 ------PYGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD---YANKLIGGHCYMKGL 248 (641)
Q Consensus 180 ------~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~ig~~~~~~~L 248 (641)
..+.+||++|++. +++.+|++|++.+...........+..++++++++.+||.+ ..++. +.+|
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~------~~~L 157 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDY------PHQL 157 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhC------Cccc
Confidence 1136999999974 67778999998765432111111124567899999999975 34554 4599
Q ss_pred CHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 006548 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (641)
Q Consensus 249 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (641)
||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |.|||+++|++ +.+.++||||++|++|+++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999865 89999988887 4788899999999999999
Q ss_pred EEeChhHHH
Q 006548 328 FFGETLACL 336 (641)
Q Consensus 328 ~~G~~~~~~ 336 (641)
+.|+++++.
T Consensus 237 ~~g~~~~~~ 245 (529)
T PRK15134 237 EQNRAATLF 245 (529)
T ss_pred EeCCHHHHh
Confidence 999988764
No 243
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.7e-39 Score=322.32 Aligned_cols=194 Identities=24% Similarity=0.320 Sum_probs=169.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 181 (641)
++++||++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|++ |+|.++|.+... ..
T Consensus 1 l~i~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (201)
T cd03231 1 LEADELTCERD-----GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLA---GRVLLNGGPLDFQRDSIA 72 (201)
T ss_pred CEEEEEEEEeC-----CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccccHHhh
Confidence 36899999884 3469999999999999999999999999999999999999875 999999987432 12
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++|++.+++.+||+||+.+... . ...++++++++.+++.+..++.+ ..||||||||++||||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~e~l~~~~~----~---~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~lara 139 (201)
T cd03231 73 RGLLYLGHAPGIKTTLSVLENLRFWHA----D---HSDEQVEEALARVGLNGFEDRPV------AQLSAGQQRRVALARL 139 (201)
T ss_pred hheEEeccccccCCCcCHHHHHHhhcc----c---ccHHHHHHHHHHcCChhhhcCch------hhCCHHHHHHHHHHHH
Confidence 469999999999889999999977421 1 13456889999999988777654 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (641)
|+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++. +....||+++++
T Consensus 140 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 140 LLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 99999999999999999999999999999999877999999999885 677899999887
No 244
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-39 Score=328.09 Aligned_cols=213 Identities=24% Similarity=0.340 Sum_probs=172.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-----~ 180 (641)
++++|+++.+++ .+.+|+|+|+.+++||+++|+||||||||||+++|+|+.+|.+ |+|.++|.+... .
T Consensus 1 l~~~~l~~~~~~----~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~v~~~g~~~~~~~~~~~ 73 (236)
T cd03253 1 IEFENVTFAYDP----GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSS---GSILIDGQDIREVTLDSL 73 (236)
T ss_pred CEEEEEEEEeCC----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CEEEECCEEhhhCCHHHH
Confidence 368999998842 2469999999999999999999999999999999999998875 999999986532 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcC-----CCCCCCCCHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRR 255 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerqR 255 (641)
++.++|++|+..+++ .||+||+.+... . .....+.+.++..++.+..+....+ +..++.||||||||
T Consensus 74 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~----~---~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~r 145 (236)
T cd03253 74 RRAIGVVPQDTVLFN-DTIGYNIRYGRP----D---ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQR 145 (236)
T ss_pred HhhEEEECCCChhhc-chHHHHHhhcCC----C---CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHH
Confidence 246999999998885 699999976421 1 1112345556666665554433210 22457999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
|+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ |.|||+++|++. .+. .||++++|++|+++..|+.++.
T Consensus 146 l~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~-~~d~~~~l~~g~i~~~~~~~~~ 222 (236)
T cd03253 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TIV-NADKIIVLKDGRIVERGTHEEL 222 (236)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHH-hCCEEEEEECCEEEeeCCHHHH
Confidence 9999999999999999999999999999999999999987 899999998875 554 4999999999999999887665
Q ss_pred H
Q 006548 336 L 336 (641)
Q Consensus 336 ~ 336 (641)
.
T Consensus 223 ~ 223 (236)
T cd03253 223 L 223 (236)
T ss_pred h
Confidence 4
No 245
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2.2e-39 Score=331.81 Aligned_cols=199 Identities=24% Similarity=0.335 Sum_probs=170.4
Q ss_pred eeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C----CceEEEEcCCCccCCCCCH
Q 006548 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P----YGSYGFVERETTLIGSLTV 199 (641)
Q Consensus 125 iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-~----~~~~~yv~Q~~~l~~~lTV 199 (641)
+|+|+|+++++||+++|+||||||||||+++|+|+.++ +|+|.++|++... . .+.++|++|++.+++.+|+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC----CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 79999999999999999999999999999999999864 3999999987532 1 2358999999888888999
Q ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHh-------CCcEEEEe
Q 006548 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM-------RPHVLFID 272 (641)
Q Consensus 200 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~-------~P~iLlLD 272 (641)
+||+.+..... .......++++++++.+||.+..++.+ +.||||||||++|||||+. +|++||||
T Consensus 87 ~~nl~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 87 FQYLTLHQPDK--TRTEAVASALNEVAEALGLDDKLGRSV------NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHHhcCccC--CCcHHHHHHHHHHHHHcCCHhHhcCCc------ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 99998753211 111123457889999999987777654 4999999999999999998 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 273 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 273 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||+|||+.++..+.+.|++++++|.|||+++|+. .++.++||++++|++|++++.|+.+++.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999987799999988887 4788999999999999999999877653
No 246
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-38 Score=329.48 Aligned_cols=215 Identities=23% Similarity=0.245 Sum_probs=181.4
Q ss_pred ceEEEEeEEEEEeccc---------------ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee
Q 006548 104 ASVVWKDLTVTIKGKR---------------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~---------------~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G 168 (641)
..+.++||+++|...+ ...+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~---G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTV---G 79 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---e
Confidence 4688999998886421 134569999999999999999999999999999999999999875 9
Q ss_pred EEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCC
Q 006548 169 EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248 (641)
Q Consensus 169 ~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~L 248 (641)
+|.++|. ++++.|+..+.+.+|+.||+.+....... ...+..+.++++++.+++.+..++.+ ..|
T Consensus 80 ~I~~~g~--------~~~~~~~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~L 144 (264)
T PRK13546 80 KVDRNGE--------VSVIAISAGLSGQLTGIENIEFKMLCMGF-KRKEIKAMTPKIIEFSELGEFIYQPV------KKY 144 (264)
T ss_pred EEEECCE--------EeEEecccCCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhcCCc------ccC
Confidence 9999985 35667777777889999999875433211 11123445678889999988777654 499
Q ss_pred CHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 006548 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (641)
Q Consensus 249 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (641)
||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|+|+++|+. .++.++||++++|++|+++.
T Consensus 145 S~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~-~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 145 SSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNL-GQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHHcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999987799999988886 47889999999999999999
Q ss_pred EeChhHHHH
Q 006548 329 FGETLACLQ 337 (641)
Q Consensus 329 ~G~~~~~~~ 337 (641)
.|+.+++.+
T Consensus 224 ~g~~~~~~~ 232 (264)
T PRK13546 224 YGELDDVLP 232 (264)
T ss_pred eCCHHHHHH
Confidence 999887654
No 247
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.3e-39 Score=380.36 Aligned_cols=214 Identities=25% Similarity=0.327 Sum_probs=183.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|++++|++ ..+.+|+|+|+++++||.+||+||||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 477 ~I~~~~vsf~y~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg~~i~~~~~~~ 550 (710)
T TIGR03796 477 YVELRNITFGYSP---LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS---GEILFDGIPREEIPREV 550 (710)
T ss_pred eEEEEEEEEecCC---CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEeHHHCCHHH
Confidence 6999999999963 23579999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.++.++||+|++.+|. .|++||+.++ .+. ..++++.++++..++.+..++.+.|.+ ...+|||||||
T Consensus 551 lr~~i~~v~Q~~~lf~-gTi~eNi~l~----~~~---~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQ 622 (710)
T TIGR03796 551 LANSVAMVDQDIFLFE-GTVRDNLTLW----DPT---IPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQ 622 (710)
T ss_pred HHhheeEEecCChhhh-ccHHHHhhCC----CCC---CCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHH
Confidence 2467999999999985 5999999653 111 245668889999999887766654332 33679999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+++|++||||||||+||+.++..+.+.|++ .++|+|+++|+++ ....||+|++|++|++++.|+.++
T Consensus 623 RiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~~ 697 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHEE 697 (710)
T ss_pred HHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHHH
Confidence 99999999999999999999999999999999999986 4799999999984 346699999999999999999988
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+.+
T Consensus 698 Ll~ 700 (710)
T TIGR03796 698 LWA 700 (710)
T ss_pred HHH
Confidence 764
No 248
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.2e-39 Score=398.17 Aligned_cols=223 Identities=22% Similarity=0.304 Sum_probs=196.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..++++||++.|++ ..+.+|+|+|+.+++||++||+||||||||||+|+|+|+++|++ |+|.++|++...
T Consensus 1936 ~~L~v~nLsK~Y~~---~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pts---G~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257 1936 DILRLNELTKVYSG---TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTS---GDATVAGKSILTNISD 2009 (2272)
T ss_pred ceEEEEEEEEEECC---CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCc---cEEEECCEECcchHHH
Confidence 46899999999852 13579999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
.++.+||++|++.+++.+||+|++.+.+.++.. ...+.+++++++++.+||.+.+|+.++ +|||||||||+||
T Consensus 2010 ~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~-~~~~~~~~v~~lLe~lgL~~~~dk~~~------~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2010 VHQNMGYCPQFDAIDDLLTGREHLYLYARLRGV-PAEEIEKVANWSIQSLGLSLYADRLAG------TYSGGNKRKLSTA 2082 (2272)
T ss_pred HhhhEEEEeccccCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCHHHhcCChh------hCCHHHHHHHHHH
Confidence 135699999999999999999999887665421 111235668899999999998888665 9999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHh
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (641)
+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||+++|+. +++..+||||++|++|+++..|+++++...|
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence 999999999999999999999999999999999988899999988876 6899999999999999999999999988776
Q ss_pred h
Q 006548 340 S 340 (641)
Q Consensus 340 ~ 340 (641)
.
T Consensus 2162 g 2162 (2272)
T TIGR01257 2162 G 2162 (2272)
T ss_pred C
Confidence 5
No 249
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.3e-39 Score=334.68 Aligned_cols=214 Identities=20% Similarity=0.290 Sum_probs=179.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.|... ...+|+|+|+.+++||+++|+|+||||||||+++|+|+++ .+ |+|+++|.+...
T Consensus 2 ~i~~~nls~~~~~~---~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~---G~I~i~g~~i~~~~~~~ 74 (275)
T cd03289 2 QMTVKDLTAKYTEG---GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TE---GDIQIDGVSWNSVPLQK 74 (275)
T ss_pred eEEEEEEEEEeCCC---CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CC---cEEEECCEEhhhCCHHH
Confidence 47899999999531 3469999999999999999999999999999999999987 43 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.++.++|++|++.+++ .||+||+.... . ...+++.++++.+||.+..++.+++.. ....|||||||
T Consensus 75 lr~~i~~v~q~~~lf~-~tv~~nl~~~~-----~---~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~q 145 (275)
T cd03289 75 WRKAFGVIPQKVFIFS-GTFRKNLDPYG-----K---WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQ 145 (275)
T ss_pred HhhhEEEECCCcccch-hhHHHHhhhcc-----C---CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 1346999999999987 49999995311 0 123467888999999988887664211 12359999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+.+|+||||||||++||+.+...+.+.|+++. +++|||+++|++ +.+. .||||++|++|++++.|++++
T Consensus 146 rl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~-~~i~-~~dri~vl~~G~i~~~g~~~~ 222 (275)
T cd03289 146 LMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRI-EAML-ECQRFLVIEENKVRQYDSIQK 222 (275)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCH-HHHH-hCCEEEEecCCeEeecCCHHH
Confidence 9999999999999999999999999999999999999875 489999988887 4565 499999999999999999998
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
++.
T Consensus 223 l~~ 225 (275)
T cd03289 223 LLN 225 (275)
T ss_pred Hhh
Confidence 765
No 250
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-39 Score=348.49 Aligned_cols=216 Identities=25% Similarity=0.340 Sum_probs=186.6
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 006548 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~--- 179 (641)
+..++|+||++.|. +++++|+++||+|++||-+||+|+|||||||++|+|.+... . +|+|++||+++..
T Consensus 349 ~~~I~F~dV~f~y~----~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~ 420 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYG----PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSL 420 (591)
T ss_pred CCcEEEEeeEEEeC----CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECCeeHhhhCh
Confidence 34699999999996 34569999999999999999999999999999999999987 4 3999999998532
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCC-----CCCCCCCHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGE 252 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGe 252 (641)
.++.+||||||..||. -||.+|+.|+. .....++|-++.+..|+.+...++++|. +....|||||
T Consensus 421 ~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-------~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGe 492 (591)
T KOG0057|consen 421 ESLRQSIGVVPQDSVLFN-DTILYNIKYGN-------PSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGE 492 (591)
T ss_pred HHhhhheeEeCCcccccc-hhHHHHhhcCC-------CCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccch
Confidence 2457999999999995 49999998852 1234567888999999988877775542 3456699999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
||||+||||++.+|+|+++|||||+||..+..++++.+.+ ...|+|+|++.|... ...-||+|++|++|++...|+-
T Consensus 493 kQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~--ll~~~DkI~~l~nG~v~e~gth 569 (591)
T KOG0057|consen 493 KQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLD--LLKDFDKIIVLDNGTVKEYGTH 569 (591)
T ss_pred HHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecch--hHhcCCEEEEEECCeeEEeccH
Confidence 9999999999999999999999999999999999999999 445899999999874 5678999999999999999999
Q ss_pred hHHHH
Q 006548 333 LACLQ 337 (641)
Q Consensus 333 ~~~~~ 337 (641)
++++.
T Consensus 570 ~ell~ 574 (591)
T KOG0057|consen 570 SELLA 574 (591)
T ss_pred HHHhh
Confidence 88875
No 251
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=8e-39 Score=327.29 Aligned_cols=216 Identities=21% Similarity=0.271 Sum_probs=174.8
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~--~~~~~~~G~I~~~G~~~~~---- 179 (641)
++++||++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+. +|++ |+|.++|.+...
T Consensus 2 i~~~nl~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~---G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 2 LSIKDLHVSVE-----DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTG---GTVEFKGKDLLELSPE 73 (248)
T ss_pred eEEEEEEEEeC-----CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCc---eEEEECCCccccCCHH
Confidence 68999999984 346999999999999999999999999999999999995 4654 999999976421
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHH-hc-CCC-c-cc--hHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSAL-LQ-LPG-F-FC--QRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPC 250 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~-~~-~~~-~-~~--~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSG 250 (641)
....++|++|++.+++.+|+.+++.+... .. ... . .. ...+.++++++.+++. +..++.+. +.|||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~LS~ 148 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN-----VGFSG 148 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC-----CCCCH
Confidence 11359999999988888887777643211 11 000 0 00 1245678889999995 44444321 37999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhc-CCEEEEEeCCeEEEE
Q 006548 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLFF 329 (641)
Q Consensus 251 GerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv~~ 329 (641)
||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||+++|++. .+... +|++++|++|++++.
T Consensus 149 G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~ 227 (248)
T PRK09580 149 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKS 227 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999999999877899999999874 56666 899999999999999
Q ss_pred eChhHH
Q 006548 330 GETLAC 335 (641)
Q Consensus 330 G~~~~~ 335 (641)
|+++.+
T Consensus 228 g~~~~~ 233 (248)
T PRK09580 228 GDFTLV 233 (248)
T ss_pred CCHHHH
Confidence 988754
No 252
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-39 Score=336.59 Aligned_cols=222 Identities=23% Similarity=0.305 Sum_probs=179.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM--- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~--~~~~G~I~~~G~~~~~--- 179 (641)
.+.++||++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|++++. ...+|+|.++|.+...
T Consensus 45 ~l~i~nl~~~~~-----~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 45 KLSVEDLDVYYG-----DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred eEEEEEEEEEeC-----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 589999999984 346999999999999999999999999999999999998521 0125999999986531
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-----------Cc-cchHHHHHHHHHHHcCCchHHhhhhcCCC
Q 006548 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-----------GF-FCQRKNVVEDAIHAMSLSDYANKLIGGHC 243 (641)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-----------~~-~~~~~~~v~~~l~~lgL~~~~~~~ig~~~ 243 (641)
.++.++|++|+..+++ .||+||+.+....... .. ....++.++++++.+++.+..+... +.
T Consensus 120 ~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~ 196 (305)
T PRK14264 120 NLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL--DD 196 (305)
T ss_pred cHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh--cC
Confidence 1246999999998887 5999999886532100 00 0112456888999999854332222 23
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEE-EEEe
Q 006548 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI-CLLS 322 (641)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v-~vL~ 322 (641)
.+++|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ .|+|+++|++ ..+.++||++ ++|+
T Consensus 197 ~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~tiiivtH~~-~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 197 NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHNM-QQAARISDQTAVFLT 274 (305)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEEcCH-HHHHHhcCEEEEEec
Confidence 56799999999999999999999999999999999999999999999999864 8999988887 4788999997 5789
Q ss_pred CCeEEEEeChhHHH
Q 006548 323 NGNTLFFGETLACL 336 (641)
Q Consensus 323 ~G~iv~~G~~~~~~ 336 (641)
+|++++.|+++++.
T Consensus 275 ~G~i~~~g~~~~~~ 288 (305)
T PRK14264 275 GGELVEYDDTDKIF 288 (305)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999987654
No 253
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.1e-39 Score=364.35 Aligned_cols=218 Identities=22% Similarity=0.243 Sum_probs=182.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECC---------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNG--------- 174 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~--~~~~~~~G~I~~~G--------- 174 (641)
++++|+++.|. ++.+|+|+|+.+++||+++|+||||||||||+|+|+|++ +|++ |+|.++|
T Consensus 1 l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~---G~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 1 IEVKNLTKKFD-----GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTS---GRIIYHVALCEKCGYV 72 (520)
T ss_pred CEEEEEEEEEC-----CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCc---eEEEEecccccccccc
Confidence 46899999983 346999999999999999999999999999999999996 5654 9999972
Q ss_pred --------------EeC--------C-------CCCceEEEEcCC-CccCCCCCHHHHHHHHHHhcCCCccchHHHHHHH
Q 006548 175 --------------AKS--------E-------MPYGSYGFVERE-TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVED 224 (641)
Q Consensus 175 --------------~~~--------~-------~~~~~~~yv~Q~-~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~ 224 (641)
.+. . ..++.++|++|+ +.+++.+||+||+.++..... ....+.++++.+
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~ 151 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIG-YEGKEAVGRAVD 151 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 111 0 012458999997 678888999999988654321 111123567899
Q ss_pred HHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEE
Q 006548 225 AIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFT 303 (641)
Q Consensus 225 ~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t 303 (641)
+++.+||.+..++.+ .+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++
T Consensus 152 ~l~~~gl~~~~~~~~------~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviiv 225 (520)
T TIGR03269 152 LIEMVQLSHRITHIA------RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT 225 (520)
T ss_pred HHHHcCChhhhhcCc------ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence 999999988877754 49999999999999999999999999999999999999999999999975 48999998
Q ss_pred EeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHh
Q 006548 304 INQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (641)
Q Consensus 304 ~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (641)
+|++ ..+.++||++++|++|++++.|++++..+.+
T Consensus 226 tHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 226 SHWP-EVIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred eCCH-HHHHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 8887 4788899999999999999999988876543
No 254
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=5e-39 Score=318.06 Aligned_cols=193 Identities=25% Similarity=0.310 Sum_probs=164.8
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 181 (641)
++++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (198)
T TIGR01189 1 LAARNLACSRG-----ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDS---GEVRWNGTALAEQRDEPH 72 (198)
T ss_pred CEEEEEEEEEC-----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCEEcccchHHhh
Confidence 36889999884 3569999999999999999999999999999999999998875 999999986432 12
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++|++.+++.+||.||+.+...... ..+++++++++.+++.+..++.+ ..|||||||||+||||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~la~a 141 (198)
T TIGR01189 73 RNILYLGHLPGLKPELSALENLHFWAAIHG-----GAQRTIEDALAAVGLTGFEDLPA------AQLSAGQQRRLALARL 141 (198)
T ss_pred hheEEeccCcccccCCcHHHHHHHHHHHcC-----CcHHHHHHHHHHcCCHHHhcCCh------hhcCHHHHHHHHHHHH
Confidence 468999999988888999999987543321 12346788999999998887755 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEE
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICL 320 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~v 320 (641)
|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++.. -.|++++.
T Consensus 142 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 142 WLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 999999999999999999999999999999998789999999998853 23677664
No 255
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-39 Score=351.50 Aligned_cols=214 Identities=22% Similarity=0.386 Sum_probs=186.9
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 180 (641)
..++++|++++|+ ..++|+|||+.+++||++||+|.||||||||+|+|+|.++|++ |+|.++|++....
T Consensus 7 ~ll~~~~i~K~Fg-----gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~---G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 7 PLLELRGISKSFG-----GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDS---GEILIDGKPVAFSSPR 78 (500)
T ss_pred ceeeeecceEEcC-----CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCC---ceEEECCEEccCCCHH
Confidence 3688999999994 5689999999999999999999999999999999999999986 9999999975421
Q ss_pred ---CceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-C--ccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHH
Q 006548 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLP-G--FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~--~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (641)
...|+.|+|+..++|++||.||+.++.....+ . +..+..++..++|+.+|+..-.+++++ +||+||||
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~------~LsiaqrQ 152 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG------DLSIAQRQ 152 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh------hCCHHHHH
Confidence 24699999999999999999999876443321 1 112245678899999999533666655 99999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
.|+|||||..+++|||||||||+|+......+.+.+++|+++|.++|+++|.. +|++++||||.||+||+++..++.
T Consensus 153 ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 153 MVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRL-DEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcH-HHHHHhcCEEEEEeCCEEeeeccc
Confidence 99999999999999999999999999999999999999999999999988865 699999999999999999998883
No 256
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=5.7e-39 Score=323.53 Aligned_cols=206 Identities=19% Similarity=0.243 Sum_probs=169.3
Q ss_pred EEEEeEEEEEeccccc--ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC--CE--eCC-
Q 006548 106 VVWKDLTVTIKGKRRY--SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN--GA--KSE- 178 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~--G~--~~~- 178 (641)
++++||++.|..++.. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++ |. +..
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDS---GRILVRHEGAWVDLAQ 78 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEEecCCCccchhh
Confidence 6889999999532111 2469999999999999999999999999999999999998875 999998 42 221
Q ss_pred C--------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchH-HhhhhcCCCCCCCCC
Q 006548 179 M--------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLP 249 (641)
Q Consensus 179 ~--------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LS 249 (641)
. ..+.++|++|++.+++.+||.||+.+...... .......+++.++++.+|+.+. .++. +.+||
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~LS 151 (224)
T TIGR02324 79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERG-VPREAARARARELLARLNIPERLWHLP------PATFS 151 (224)
T ss_pred cCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchhhhhCC------cccCC
Confidence 0 12468999999999999999999987643221 1111234567889999999753 4543 45999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 250 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|++ ..+.++||+++.+.
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceeEecC
Confidence 9999999999999999999999999999999999999999999987799999988885 56778999998763
No 257
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-39 Score=312.04 Aligned_cols=169 Identities=29% Similarity=0.434 Sum_probs=152.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 181 (641)
++++|+++.++ .+.+|+|+|+++.+||+++|+||||||||||+++|+|+.+|.+ |+|.++|++... .+
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (173)
T cd03230 1 IEVRNLSKRYG-----KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDS---GEIKVLGKDIKKEPEEVK 72 (173)
T ss_pred CEEEEEEEEEC-----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEcccchHhhh
Confidence 36899999884 2369999999999999999999999999999999999998865 999999986532 13
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++|++.+++.+|+.||+. ||||||||++||||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~~~-------------------------------------------LS~G~~qrv~lara 109 (173)
T cd03230 73 RRIGYLPEEPSLYENLTVRENLK-------------------------------------------LSGGMKQRLALAQA 109 (173)
T ss_pred ccEEEEecCCccccCCcHHHHhh-------------------------------------------cCHHHHHHHHHHHH
Confidence 56999999999998899999872 99999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++ .++.++||++++|++|++
T Consensus 110 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 110 LLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999999999999987789999988887 478889999999999974
No 258
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-39 Score=364.16 Aligned_cols=220 Identities=19% Similarity=0.277 Sum_probs=182.8
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEeCCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVNGAKSEMP-- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~-~~~~~~G~I~~~G~~~~~~-- 180 (641)
..++++||++.|... +++.+|+|+|+++++||+++|+||||||||||+|+|+|+++ |++ |+|.++|++....
T Consensus 258 ~~l~~~~l~~~~~~~--~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~---G~i~~~g~~~~~~~~ 332 (506)
T PRK13549 258 VILEVRNLTAWDPVN--PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWE---GEIFIDGKPVKIRNP 332 (506)
T ss_pred ceEEEecCccccccc--cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCC---cEEEECCEECCCCCH
Confidence 358999999887321 13469999999999999999999999999999999999987 454 9999999875321
Q ss_pred ----CceEEEEcCCC---ccCCCCCHHHHHHHHHHhcCCC----ccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCC
Q 006548 181 ----YGSYGFVERET---TLIGSLTVREYLYYSALLQLPG----FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGL 248 (641)
Q Consensus 181 ----~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~~----~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~L 248 (641)
.+.++|++|++ .+++.+||.||+.+........ .....+++++++++.+++. +..++.+ ..|
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~L 406 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI------ARL 406 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc------ccC
Confidence 23589999985 4788899999998753211110 1112345688999999996 5667655 499
Q ss_pred CHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 006548 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (641)
Q Consensus 249 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (641)
||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++|+|||+++|+. +++.++||++++|++|+++.
T Consensus 407 SgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~ 485 (506)
T PRK13549 407 SGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL-PEVLGLSDRVLVMHEGKLKG 485 (506)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999988899999988887 58889999999999999999
Q ss_pred EeChhHH
Q 006548 329 FGETLAC 335 (641)
Q Consensus 329 ~G~~~~~ 335 (641)
.|+++++
T Consensus 486 ~~~~~~~ 492 (506)
T PRK13549 486 DLINHNL 492 (506)
T ss_pred EeccccC
Confidence 9987653
No 259
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-40 Score=314.65 Aligned_cols=217 Identities=24% Similarity=0.381 Sum_probs=191.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----- 180 (641)
++++||+++| +.+.+|+++|..+++|.+++|+|||||||||||.+++.+++.++ |+|+++|.+....
T Consensus 2 I~i~nv~K~y-----~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~---G~i~i~g~~~~~~~s~~L 73 (252)
T COG4604 2 ITIENVSKSY-----GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDS---GEITIDGLELTSTPSKEL 73 (252)
T ss_pred eeehhhhHhh-----CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccC---ceEEEeeeecccCChHHH
Confidence 6789999988 45689999999999999999999999999999999999999875 9999999876432
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
.+.++.+-|+..+...+||+|-+.|+..-...+ ...+.+..++++++.++|.++.|+... +||||||||.-||
T Consensus 74 Ak~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd------~LSGGQrQRAfIA 147 (252)
T COG4604 74 AKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLD------ELSGGQRQRAFIA 147 (252)
T ss_pred HHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHH------hcccchhhhhhhh
Confidence 245788899999999999999998873211111 122466789999999999999999765 9999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
+.|+++.+.++||||.++||-..+..+|+.|++++++ |+||+++.|+.. .+..++|+|+-|++|+++..|+++++++
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc-HHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 9999999999999999999999999999999999966 999999999875 7889999999999999999999999863
No 260
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-39 Score=299.84 Aligned_cols=214 Identities=26% Similarity=0.322 Sum_probs=184.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.+.++|+++.| +..++|.||++..+.||.+.++||||||||||++.|.=+.-|.+ |+..+.|...+.
T Consensus 2 sirv~~in~~y-----g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~s---g~l~ia~~~fd~s~~~~ 73 (242)
T COG4161 2 SIQLNGINCFY-----GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRS---GTLNIAGNHFDFSKTPS 73 (242)
T ss_pred ceEEccccccc-----ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCC---CeEEecccccccccCcc
Confidence 47899999988 35579999999999999999999999999999999998887765 999998754211
Q ss_pred ------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHH
Q 006548 180 ------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253 (641)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGer 253 (641)
.++.+|+|+|+..+.|++||.|||..+...-+.....+.+.+..++|+.+.|.+++|+ +|-.|||||+
T Consensus 74 ~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr------~plhlsggqq 147 (242)
T COG4161 74 DKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADR------YPLHLSGGQQ 147 (242)
T ss_pred HHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccccccc------Cceecccchh
Confidence 1346899999999999999999997653221211222355678899999999999988 4569999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
|||+|||||+.+|++|++||||++|||.-..++++++++|+..|.|-++++|.- +...+.+.+|+.|++|+||+.|+.+
T Consensus 148 qrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev-~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred hhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeeh-hHHHhhhhheEeeecCeeEeecchh
Confidence 999999999999999999999999999999999999999999999998888876 4678899999999999999999864
No 261
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.6e-39 Score=318.68 Aligned_cols=197 Identities=26% Similarity=0.331 Sum_probs=168.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCc
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYG 182 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~--~~~ 182 (641)
.++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++++ |+|.++|.+... .++
T Consensus 2 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 73 (207)
T PRK13539 2 MLEGEDLACVRG-----GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAA---GTIKLDGGDIDDPDVAE 73 (207)
T ss_pred EEEEEeEEEEEC-----CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEeCcchhhHh
Confidence 478999999984 3469999999999999999999999999999999999998875 999999986432 234
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
.++|++|++.+++.+||+||+.+..... . ...+.++++++.+||.+..++.+ +.||||||||++|||+|
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~--~---~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~la~al 142 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFL--G---GEELDIAAALEAVGLAPLAHLPF------GYLSAGQKRRVALARLL 142 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhc--C---CcHHHHHHHHHHcCCHHHHcCCh------hhcCHHHHHHHHHHHHH
Confidence 6899999988888999999998754332 1 12345889999999987776644 49999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|+.. ++.. |+++.+..
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 143 VSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhcc--CcEEeecC
Confidence 9999999999999999999999999999999878999999999874 5654 88887743
No 262
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.1e-39 Score=366.44 Aligned_cols=216 Identities=25% Similarity=0.368 Sum_probs=185.0
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..++++|+++.|++. .+.+|+|+|++++|||.+||+||||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 337 ~~i~~~~v~f~y~~~---~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~---G~I~i~g~~i~~~~~~ 410 (574)
T PRK11160 337 VSLTLNNVSFTYPDQ---PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQ---GEILLNGQPIADYSEA 410 (574)
T ss_pred CeEEEEEEEEECCCC---CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEhhhCCHH
Confidence 369999999999532 2469999999999999999999999999999999999999975 999999987542
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGer 253 (641)
.++.++||+|++.+|+ .|++||+.++. + ...++.+.++++.+++.+..++ +.|.+ ....||||||
T Consensus 411 ~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~---~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqr 481 (574)
T PRK11160 411 ALRQAISVVSQRVHLFS-ATLRDNLLLAA----P---NASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQ 481 (574)
T ss_pred HHHhheeEEcccchhhc-ccHHHHhhcCC----C---ccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHH
Confidence 1356999999999986 59999997642 1 1245678999999999988766 44333 3467999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|+++ .+ ..||+|++|++|++++.|+.+
T Consensus 482 qRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~-~~-~~~d~i~~l~~G~i~~~g~~~ 558 (574)
T PRK11160 482 RRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT-GL-EQFDRICVMDNGQIIEQGTHQ 558 (574)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh-HH-HhCCEEEEEeCCeEEEeCCHH
Confidence 99999999999999999999999999999999999999986 4789999999985 44 569999999999999999988
Q ss_pred HHHH
Q 006548 334 ACLQ 337 (641)
Q Consensus 334 ~~~~ 337 (641)
++.+
T Consensus 559 ~l~~ 562 (574)
T PRK11160 559 ELLA 562 (574)
T ss_pred HHHh
Confidence 7654
No 263
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=3.3e-39 Score=376.23 Aligned_cols=215 Identities=23% Similarity=0.340 Sum_probs=181.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|++. .++.+|+|+|++++|||.+||+||||||||||+|+|+|+++|++ |+|.+||++...
T Consensus 478 ~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~idg~~i~~~~~~~ 552 (711)
T TIGR00958 478 LIEFQDVSFSYPNR--PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG---GQVLLDGVPLVQYDHHY 552 (711)
T ss_pred eEEEEEEEEECCCC--CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CEEEECCEEHHhcCHHH
Confidence 59999999999632 23579999999999999999999999999999999999999975 999999988532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.++.++||+|++.+|. .|++|||.++. +. ..++++.++++..++.+..++...|.+ ....|||||||
T Consensus 553 lr~~i~~v~Q~~~lF~-gTIreNI~~g~----~~---~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQ 624 (711)
T TIGR00958 553 LHRQVALVGQEPVLFS-GSVRENIAYGL----TD---TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQ 624 (711)
T ss_pred HHhhceEEecCccccc-cCHHHHHhcCC----CC---CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHH
Confidence 1357999999999985 69999997642 11 235678899999999887766554332 23579999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+++|+|||||||||+||+.++..+.+ .. ..+++|+|+++|++. ..+.||+|++|++|++++.|+.++
T Consensus 625 RlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~e 699 (711)
T TIGR00958 625 RIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQ 699 (711)
T ss_pred HHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHH
Confidence 9999999999999999999999999999999988 22 235789999999984 456799999999999999999988
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+.+
T Consensus 700 L~~ 702 (711)
T TIGR00958 700 LME 702 (711)
T ss_pred HHh
Confidence 764
No 264
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-39 Score=348.94 Aligned_cols=216 Identities=26% Similarity=0.355 Sum_probs=186.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++||+|+|++. ..++|+|+|+++++||.+||+|+||||||||+++|+|.++|++ |+|.+||.+....
T Consensus 336 ~l~~~~vsF~y~~~---~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~---G~i~~~g~~~~~l~~~~ 409 (573)
T COG4987 336 ALELRNVSFTYPGQ---QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQ---GSITLNGVEIASLDEQA 409 (573)
T ss_pred eeeeccceeecCCC---ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCC---CeeeECCcChhhCChhh
Confidence 68999999999753 3479999999999999999999999999999999999999986 9999999875321
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcC-----CCCCCCCCHHHHH
Q 006548 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERR 254 (641)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerq 254 (641)
++.+++++|..++|. -|+++||..+. | ...++.+.++++.+||++.....+.| ++..+.|||||||
T Consensus 410 ~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~----~---~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~r 481 (573)
T COG4987 410 LRETISVLTQRVHLFS-GTLRDNLRLAN----P---DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR 481 (573)
T ss_pred HHHHHhhhccchHHHH-HHHHHHHhhcC----C---CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHH
Confidence 346899999999985 59999997641 2 13567799999999999877665321 2345789999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||+|++|.++++|||||.|||+.+..++++.|.+-++ |+|+|++||+... .+.||||++|++|+++++|...+
T Consensus 482 RLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~Gkiie~G~~~~ 558 (573)
T COG4987 482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKIIEEGTHAE 558 (573)
T ss_pred HHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEECCeeeecCCHHh
Confidence 99999999999999999999999999999999999998764 8999999999853 57799999999999999999988
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+..
T Consensus 559 Ll~ 561 (573)
T COG4987 559 LLA 561 (573)
T ss_pred hhc
Confidence 764
No 265
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=4.4e-39 Score=374.97 Aligned_cols=217 Identities=24% Similarity=0.391 Sum_probs=186.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|++++|++ ..+++|+|+|++++|||.+||+|+||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 463 ~I~~~~vsf~Y~~---~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg~~l~~~~~~~ 536 (694)
T TIGR03375 463 EIEFRNVSFAYPG---QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTE---GSVLLDGVDIRQIDPAD 536 (694)
T ss_pred eEEEEEEEEEeCC---CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEhhhCCHHH
Confidence 5999999999953 23569999999999999999999999999999999999999975 999999987542
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.++.++||+|++.+|. .|++||+.++. +. ..++++.++++..++.+..++.+.|.+ ....|||||||
T Consensus 537 lr~~i~~v~Q~~~lf~-~TI~eNi~~~~----~~---~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQ 608 (694)
T TIGR03375 537 LRRNIGYVPQDPRLFY-GTLRDNIALGA----PY---ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQ 608 (694)
T ss_pred HHhccEEECCChhhhh-hhHHHHHhCCC----CC---CCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 1357999999999986 59999997631 11 245678899999999887766554322 34679999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+.+|++||||||||+||+.++..+.+.|+++.+ ++|+|+++|+++ ..+.||+|++|++|++++.|+.++
T Consensus 609 RlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~e 685 (694)
T TIGR03375 609 AVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQ 685 (694)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHH
Confidence 99999999999999999999999999999999999999864 789999999984 457899999999999999999988
Q ss_pred HHHH
Q 006548 335 CLQH 338 (641)
Q Consensus 335 ~~~~ 338 (641)
+++.
T Consensus 686 Ll~~ 689 (694)
T TIGR03375 686 VLEA 689 (694)
T ss_pred HHHH
Confidence 7654
No 266
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=3.6e-39 Score=367.59 Aligned_cols=216 Identities=28% Similarity=0.413 Sum_probs=183.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 180 (641)
..++++|+++.|++ ++++|+|+|++++|||.+||+||||||||||+++|+|+++|++ |+|.+||.++...
T Consensus 327 ~~I~f~~vsf~y~~----~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~---G~I~idg~dI~~i~~~ 399 (567)
T COG1132 327 GSIEFENVSFSYPG----KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTS---GEILIDGIDIRDISLD 399 (567)
T ss_pred CeEEEEEEEEEcCC----CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CeEEECCEehhhcCHH
Confidence 35999999999952 4689999999999999999999999999999999999999975 9999999886432
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCC-----CCCCCCCHHHH
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGER 253 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGer 253 (641)
++.++||+|++.+|. .||+||+.++. +. ..++++.++++..++.+...+.+.|. +....||||||
T Consensus 400 ~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~----~~---at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQr 471 (567)
T COG1132 400 SLRKRIGIVSQDPLLFS-GTIRENIALGR----PD---ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQR 471 (567)
T ss_pred HHHHhccEEcccceeec-ccHHHHHhcCC----CC---CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHH
Confidence 367999999999997 79999998752 11 23466778888877766554443222 23456999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
||++||||++++|+||+||||||+||+.+...+.+.++++. +++|+++++|+++ .+.+ ||+|++|++|++++.|+.+
T Consensus 472 QrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls-ti~~-aD~IiVl~~G~i~e~G~h~ 548 (567)
T COG1132 472 QRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS-TIKN-ADRIIVLDNGRIVERGTHE 548 (567)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh-HHHh-CCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999887 5678888899984 4555 9999999999999999999
Q ss_pred HHHH
Q 006548 334 ACLQ 337 (641)
Q Consensus 334 ~~~~ 337 (641)
++..
T Consensus 549 eLl~ 552 (567)
T COG1132 549 ELLA 552 (567)
T ss_pred HHHH
Confidence 8875
No 267
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=9.1e-39 Score=316.86 Aligned_cols=187 Identities=24% Similarity=0.322 Sum_probs=159.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCCC---
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~--~~~~~~~G~I~~~G~~~~~~--- 180 (641)
++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|+. +|+. |+|.++|++....
T Consensus 1 l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~---G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 1 LEIKDLHVSVG-----GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTE---GEILFKGEDITDLPPE 72 (200)
T ss_pred CeEEEEEEEeC-----CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCc---cEEEECCEECCcCCHH
Confidence 46899999884 246999999999999999999999999999999999994 5654 9999999875321
Q ss_pred ---CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
...++|++|++.+++..|+++++ ++ ....||||||||++
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~l--------------------------------~~------~~~~LS~G~~qrv~ 114 (200)
T cd03217 73 ERARLGIFLAFQYPPEIPGVKNADFL--------------------------------RY------VNEGFSGGEKKRNE 114 (200)
T ss_pred HHhhCcEEEeecChhhccCccHHHHH--------------------------------hh------ccccCCHHHHHHHH
Confidence 23499999999888888887765 01 11389999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHh-cCCEEEEEeCCeEEEEeChhHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG-LFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~-~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++. .+.+ +||++++|++|++++.|+. ++.
T Consensus 115 laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~-~~~ 192 (200)
T cd03217 115 ILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDK-ELA 192 (200)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccH-HHH
Confidence 999999999999999999999999999999999999877899999999875 6666 7999999999999999944 455
Q ss_pred HHhh
Q 006548 337 QHFS 340 (641)
Q Consensus 337 ~~f~ 340 (641)
+.+.
T Consensus 193 ~~~~ 196 (200)
T cd03217 193 LEIE 196 (200)
T ss_pred hhhc
Confidence 4443
No 268
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6.4e-39 Score=322.39 Aligned_cols=209 Identities=22% Similarity=0.346 Sum_probs=173.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 75 (221)
T cd03244 2 DIEFKNVSLRYRP---NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS---GSILIDGVDISKIGLHD 75 (221)
T ss_pred cEEEEEEEEecCC---CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---CEEEECCEEhHhCCHHH
Confidence 3789999999853 12469999999999999999999999999999999999998875 999999987431
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcC-----CCCCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerq 254 (641)
..+.++|++|++.+++ .||+||+.+.. . ...+++.++++.+++.+..++...+ +..+..|||||||
T Consensus 76 ~~~~i~~~~q~~~l~~-~tv~enl~~~~------~--~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~q 146 (221)
T cd03244 76 LRSRISIIPQDPVLFS-GTIRSNLDPFG------E--YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQ 146 (221)
T ss_pred HhhhEEEECCCCcccc-chHHHHhCcCC------C--CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHH
Confidence 1356999999998775 59999995421 1 1234567788888887766542111 2356799999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||+++|++. ++.. ||++++|++|++++.|+
T Consensus 147 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 147 LLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TIID-SDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HHhh-CCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999864 689999888874 5654 99999999999998875
No 269
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-40 Score=325.10 Aligned_cols=193 Identities=26% Similarity=0.387 Sum_probs=170.2
Q ss_pred ceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC---------CCCCceEEEEcCCCccCCCCC
Q 006548 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS---------EMPYGSYGFVERETTLIGSLT 198 (641)
Q Consensus 128 ~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~---------~~~~~~~~yv~Q~~~l~~~lT 198 (641)
++++..+.-.++||-|+||||||||+|+|+|+.+|+. |.|.+||... ...++++|||+||..|||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPde---G~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDE---GRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccc---cEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 3455555547999999999999999999999999986 9999999742 123468999999999999999
Q ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCC
Q 006548 199 VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278 (641)
Q Consensus 199 V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgL 278 (641)
|+.||.|+.+.. .....+++.+.+|+.++.++.+ ..|||||||||+|+|||++.|++|+||||.+.|
T Consensus 93 VrgNL~YG~~~~-------~~~~fd~iv~lLGI~hLL~R~P------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 93 VRGNLRYGMWKS-------MRAQFDQLVALLGIEHLLDRYP------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred Eecchhhhhccc-------chHhHHHHHHHhCcHHHHhhCC------CccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 999999975322 3445789999999999999855 599999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 279 DSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 279 D~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|-..+.+++-.|.+|+++ +..|+.++|.. +|+.+++|+|++|++|++...|+.+++..
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 999999999999999976 88899987776 69999999999999999999999998864
No 270
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=4.8e-39 Score=375.45 Aligned_cols=215 Identities=21% Similarity=0.285 Sum_probs=183.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|+. .+++|+|+|+++++||.+||+||||||||||+|+|+|+++|++ |+|++||.+...
T Consensus 473 ~I~~~~vsf~y~~----~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~---G~I~idg~~i~~~~~~~ 545 (708)
T TIGR01193 473 DIVINDVSYSYGY----GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS---GEILLNGFSLKDIDRHT 545 (708)
T ss_pred cEEEEEEEEEcCC----CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCC---cEEEECCEEHHHcCHHH
Confidence 5899999999952 3579999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.++.++||+|++.+|+ .|++||+.++.. + ...++++.++++..++.+..++.+.|.+ ...+|||||||
T Consensus 546 lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~---~---~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQ 618 (708)
T TIGR01193 546 LRQFINYLPQEPYIFS-GSILENLLLGAK---E---NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQ 618 (708)
T ss_pred HHHheEEEecCceehh-HHHHHHHhccCC---C---CCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHH
Confidence 2357999999999986 499999976421 1 1235668889999999877665543322 34679999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+++|++||||||||+||+.++..+.+.|+++ +|+|+|+++|+++ ..+.||+|++|++|++++.|+.++
T Consensus 619 RialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~ 694 (708)
T TIGR01193 619 RIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDE 694 (708)
T ss_pred HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999985 4789999999984 457899999999999999999888
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+.+
T Consensus 695 L~~ 697 (708)
T TIGR01193 695 LLD 697 (708)
T ss_pred HHh
Confidence 754
No 271
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1e-38 Score=365.31 Aligned_cols=215 Identities=23% Similarity=0.338 Sum_probs=182.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++|+++.|++ .+.+|+|+|++++|||.++|+|+||||||||+|+|+|+++|++ |+|.+||.+....
T Consensus 334 ~I~~~~vsf~y~~----~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~---G~I~i~g~~i~~~~~~~ 406 (588)
T PRK13657 334 AVEFDDVSFSYDN----SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQS---GRILIDGTDIRTVTRAS 406 (588)
T ss_pred eEEEEEEEEEeCC----CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECCEEhhhCCHHH
Confidence 5999999999953 2469999999999999999999999999999999999999975 9999999875431
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
++.++||+|++.+|+ .|++||+.++. +. ..++++.++++.+++.+..+++..|.+ ....|||||||
T Consensus 407 ~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~---~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~Q 478 (588)
T PRK13657 407 LRRNIAVVFQDAGLFN-RSIEDNIRVGR----PD---ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQ 478 (588)
T ss_pred HHhheEEEecCccccc-ccHHHHHhcCC----CC---CCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHH
Confidence 357999999999985 59999997641 11 235568888999998876655443322 23569999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+.+|++|+||||||+||+.++..+.+.|+++. +++|+|+++|++. ..+.||+|++|++|+++..|+.++
T Consensus 479 RialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~ 555 (588)
T PRK13657 479 RLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDE 555 (588)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999875 4789999999984 457899999999999999999877
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
..+
T Consensus 556 l~~ 558 (588)
T PRK13657 556 LVA 558 (588)
T ss_pred HHH
Confidence 653
No 272
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=6.6e-39 Score=359.25 Aligned_cols=208 Identities=22% Similarity=0.242 Sum_probs=178.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P--- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-~--- 180 (641)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+... .
T Consensus 3 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~---G~i~~~~~~~~~~~~~~ 74 (490)
T PRK10938 3 SLQISQGTFRLS-----DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLS---GERQSQFSHITRLSFEQ 74 (490)
T ss_pred eEEEEeEEEEcC-----CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---ceEEECCcccccCCHHH
Confidence 489999999984 2459999999999999999999999999999999999999875 999999865421 1
Q ss_pred -CceEEEEcCCCcc--C------CCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHH
Q 006548 181 -YGSYGFVERETTL--I------GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 181 -~~~~~yv~Q~~~l--~------~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGG 251 (641)
.+.++|++|++.+ + ..+||+|++.+. ...+++++++++.+||.+..++.++ +||||
T Consensus 75 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG 139 (490)
T PRK10938 75 LQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE---------VKDPARCEQLAQQFGITALLDRRFK------YLSTG 139 (490)
T ss_pred HHHHhceeccCcchhhcccchhhccccHHHhcccc---------hhHHHHHHHHHHHcCCHhhhhCCcc------cCCHH
Confidence 2348999998643 1 147888887431 1234568899999999888877554 99999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
|||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ ..+.++||++++|++|+++..|+
T Consensus 140 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~ 218 (490)
T PRK10938 140 ETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF-DEIPDFVQFAGVLADCTLAETGE 218 (490)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999988899999988886 57889999999999999999999
Q ss_pred hhHHH
Q 006548 332 TLACL 336 (641)
Q Consensus 332 ~~~~~ 336 (641)
++++.
T Consensus 219 ~~~~~ 223 (490)
T PRK10938 219 REEIL 223 (490)
T ss_pred HHHHh
Confidence 87754
No 273
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.2e-38 Score=361.51 Aligned_cols=217 Identities=25% Similarity=0.365 Sum_probs=182.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.|++ ..+.+|+|+|+++++||.++|+||||||||||+++|+|+++|++ |+|.+||.+...
T Consensus 316 ~i~~~~v~~~y~~---~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g~~i~~~~~~~ 389 (544)
T TIGR01842 316 HLSVENVTIVPPG---GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTS---GSVRLDGADLKQWDRET 389 (544)
T ss_pred eEEEEEEEEEcCC---CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEehhhCCHHH
Confidence 5999999999953 23579999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCC-----CCCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerq 254 (641)
.++.++||+|++.+++. |++||+.+.. +. ..++++.++++..++.+..++.+.|. +....|||||||
T Consensus 390 ~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~~---~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~q 461 (544)
T TIGR01842 390 FGKHIGYLPQDVELFPG-TVAENIARFG----EN---ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQ 461 (544)
T ss_pred HhhheEEecCCcccccc-cHHHHHhccC----CC---CCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHH
Confidence 13579999999999875 9999996421 11 13445677788888776655543321 235689999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+++|++|||||||+|||+.++..+.+.|+++..+|+|+|+++|++. ..+.||+|++|++|++++.|+.++
T Consensus 462 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~ 539 (544)
T TIGR01842 462 RIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDE 539 (544)
T ss_pred HHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHH
Confidence 999999999999999999999999999999999999999767899999999984 356799999999999999999877
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+.+
T Consensus 540 l~~ 542 (544)
T TIGR01842 540 VLA 542 (544)
T ss_pred Hhh
Confidence 643
No 274
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=7.9e-39 Score=322.60 Aligned_cols=195 Identities=30% Similarity=0.438 Sum_probs=163.7
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccC--CCCCHHHHHHHHHH
Q 006548 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI--GSLTVREYLYYSAL 208 (641)
Q Consensus 131 ~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~--~~lTV~E~l~~~~~ 208 (641)
+++++||+++|+|+||||||||+++|+|+.+|++ |+|.++|++.....+.++|++|++.++ ..+|+.||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAK---GTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 4578999999999999999999999999998875 999999986533345699999998764 34799999977532
Q ss_pred hc---CCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHH
Q 006548 209 LQ---LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285 (641)
Q Consensus 209 ~~---~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~ 285 (641)
.. ........+++++++++.+++.+..++.+ .+|||||||||+|||+|+.+|++|||||||+|||+.++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPV------GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCCh------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 11 00011123456889999999988777654 4899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 286 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 286 i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
+.+.|++++++|.|+|+++|++. ++.++||+++++ +|++++.|++++..
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 99999999877999999988874 788999999999 89999999987754
No 275
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-38 Score=345.99 Aligned_cols=214 Identities=21% Similarity=0.252 Sum_probs=179.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..+.++||++.+.++ ..+.+|+|+|+.+++|++++|+|||||||||||++|+|+++|++ |+|.++|.+.
T Consensus 20 ~mL~lknL~~~~~~~--~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~s---GeI~I~G~~~------ 88 (549)
T PRK13545 20 PFDKLKDLFFRSKDG--EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNK---GTVDIKGSAA------ 88 (549)
T ss_pred ceeEEEEEEEecCCC--ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCc---eEEEECCEee------
Confidence 368899999887532 22469999999999999999999999999999999999999875 9999999742
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~ 263 (641)
++.+...+.+.+||+||+.+...... ....+..++++++++.++|.+..++.+ +.||||||||++|||||+
T Consensus 89 --~i~~~~~l~~~lTV~EnL~l~~~~~~-~~~~e~~e~i~elLe~lgL~~~ld~~~------~~LSGGQrQRVaLArAL~ 159 (549)
T PRK13545 89 --LIAISSGLNGQLTGIENIELKGLMMG-LTKEKIKEIIPEIIEFADIGKFIYQPV------KTYSSGMKSRLGFAISVH 159 (549)
T ss_pred --eEEeccccCCCCcHHHHHHhhhhhcC-CCHHHHHHHHHHHHHHcCChhHhhCCc------ccCCHHHHHHHHHHHHHH
Confidence 12223456677899999987543221 111123456778999999988887755 499999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHH
Q 006548 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (641)
Q Consensus 264 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (641)
.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++...
T Consensus 160 ~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 160 INPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 99999999999999999999999999999987899999988887 478899999999999999999999887653
No 276
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.5e-38 Score=310.70 Aligned_cols=170 Identities=26% Similarity=0.402 Sum_probs=152.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++|+++.+ +|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 4 ~l~~~~l~~~~---------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 71 (182)
T cd03215 4 VLEVRGLSVKG---------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPAS---GEITLDGKPVTRRSPRD 71 (182)
T ss_pred EEEEeccEEEe---------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCccCHHH
Confidence 58899998865 8999999999999999999999999999999999999875 9999999875321
Q ss_pred --CceEEEEcCCC---ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 181 --YGSYGFVERET---TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 181 --~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
++.++|++|+. .+++.+|++||+.+... ||||||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------------------LS~G~~qr 112 (182)
T cd03215 72 AIRAGIAYVPEDRKREGLVLDLSVAENIALSSL---------------------------------------LSGGNQQK 112 (182)
T ss_pred HHhCCeEEecCCcccCcccCCCcHHHHHHHHhh---------------------------------------cCHHHHHH
Confidence 24699999984 57888999999965310 99999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++ +++.++||++++|++|++
T Consensus 113 l~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 113 VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999999999999999987789999988886 578899999999999974
No 277
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-39 Score=361.28 Aligned_cols=212 Identities=18% Similarity=0.272 Sum_probs=178.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 180 (641)
..++++|+++.+ +.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++....
T Consensus 264 ~~l~~~~l~~~~-------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~---G~I~~~g~~~~~~~~~ 333 (510)
T PRK09700 264 TVFEVRNVTSRD-------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAG---GEIRLNGKDISPRSPL 333 (510)
T ss_pred cEEEEeCccccC-------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---CeEEECCEECCCCCHH
Confidence 368999998753 138999999999999999999999999999999999998875 9999999865321
Q ss_pred ---CceEEEEcCC---CccCCCCCHHHHHHHHHHhc---C----CC-ccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCC
Q 006548 181 ---YGSYGFVERE---TTLIGSLTVREYLYYSALLQ---L----PG-FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYM 245 (641)
Q Consensus 181 ---~~~~~yv~Q~---~~l~~~lTV~E~l~~~~~~~---~----~~-~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~ 245 (641)
++.++|++|+ ..+++.+||.||+.+....+ . .. .....+++++++++.++|. +..++.+
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------ 407 (510)
T PRK09700 334 DAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI------ 407 (510)
T ss_pred HHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc------
Confidence 2468999998 46888999999997653211 0 00 0111234678999999996 6677655
Q ss_pred CCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
..|||||||||+|||+|+.+|++|||||||+|||+.++..++++|++++++|.|||+++|++ .++.++||++++|++|+
T Consensus 408 ~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~ 486 (510)
T PRK09700 408 TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL-PEIITVCDRIAVFCEGR 486 (510)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCE
Confidence 49999999999999999999999999999999999999999999999988899999988887 57889999999999999
Q ss_pred EEEEeCh
Q 006548 326 TLFFGET 332 (641)
Q Consensus 326 iv~~G~~ 332 (641)
++..++.
T Consensus 487 i~~~~~~ 493 (510)
T PRK09700 487 LTQILTN 493 (510)
T ss_pred EEEEecC
Confidence 9988865
No 278
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-38 Score=310.24 Aligned_cols=170 Identities=31% Similarity=0.471 Sum_probs=151.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------ 179 (641)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|++++++ |+|.++|.+...
T Consensus 1 i~~~~l~~~~~-----~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (178)
T cd03229 1 LELKNVSKRYG-----QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDS---GSILIDGEDLTDLEDELP 72 (178)
T ss_pred CEEEEEEEEEC-----CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccchhHH
Confidence 36899999884 2469999999999999999999999999999999999998865 999999986432
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
..+.++|++|++.+++.+|++||+.+. ||||||||++|
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~-----------------------------------------lS~G~~qr~~l 111 (178)
T cd03229 73 PLRRRIGMVFQDFALFPHLTVLENIALG-----------------------------------------LSGGQQQRVAL 111 (178)
T ss_pred HHhhcEEEEecCCccCCCCCHHHheeec-----------------------------------------CCHHHHHHHHH
Confidence 125699999999998889999987431 99999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++.++||++++|++|+
T Consensus 112 a~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 112 ARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999999999999877 89999988887 47888999999999885
No 279
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.6e-38 Score=313.45 Aligned_cols=192 Identities=22% Similarity=0.300 Sum_probs=164.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----C
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----Y 181 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----~ 181 (641)
+.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|+++|++.... .
T Consensus 2 l~~~~l~~~~~-----~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 2 LDVIELDFDYH-----DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEK---GEILFERQSIKKDLCTYQ 73 (200)
T ss_pred EEEEEEEEEeC-----CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eeEEECCCccccCHHHHH
Confidence 68999999984 3469999999999999999999999999999999999999875 9999999865321 2
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++|+..+++.+||+||+.+..... .....++++++.+++.+..++.++ .||||||||++|||+
T Consensus 74 ~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~~rv~lara 141 (200)
T PRK13540 74 KQLCFVGHRSGINPYLTLRENCLYDIHFS------PGAVGITELCRLFSLEHLIDYPCG------LLSSGQKRQVALLRL 141 (200)
T ss_pred hheEEeccccccCcCCCHHHHHHHHHhcC------cchHHHHHHHHHcCCchhhhCChh------hcCHHHHHHHHHHHH
Confidence 46999999998888999999998764211 123468899999999877776544 899999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEE
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~ 319 (641)
|+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++. ....+|...
T Consensus 142 l~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 142 WMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 99999999999999999999999999999999877999999999874 335577543
No 280
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.6e-38 Score=362.53 Aligned_cols=217 Identities=24% Similarity=0.336 Sum_probs=184.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||+++|++. .+.+|+|+|+++++||.++|+|+||||||||+++|+|+++|++ |+|.+||.+...
T Consensus 330 ~i~~~~v~f~y~~~---~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~---G~I~i~g~~i~~~~~~~ 403 (571)
T TIGR02203 330 DVEFRNVTFRYPGR---DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDS---GQILLDGHDLADYTLAS 403 (571)
T ss_pred eEEEEEEEEEcCCC---CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CeEEECCEeHHhcCHHH
Confidence 59999999999532 3469999999999999999999999999999999999999976 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.++.++|++|++.+|. .|++|||.++. +. ...+++++++++.+|+.+..++++.|.+ ....|||||||
T Consensus 404 ~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~--~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQ 476 (571)
T TIGR02203 404 LRRQVALVSQDVVLFN-DTIANNIAYGR----TE--QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQ 476 (571)
T ss_pred HHhhceEEccCccccc-ccHHHHHhcCC----CC--CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 1356999999999885 59999997641 11 1245678899999999887766543322 23569999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++||||++.+|+||+||||||+||..+++.+++.|+++. +++|+|+++|++ ...+.||+|++|++|+++..|+.++
T Consensus 477 RiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g~~~~ 553 (571)
T TIGR02203 477 RLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRL--STIEKADRIVVMDDGRIVERGTHNE 553 (571)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeCCHHH
Confidence 9999999999999999999999999999999999999885 468999999998 4568899999999999999999887
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
..+
T Consensus 554 l~~ 556 (571)
T TIGR02203 554 LLA 556 (571)
T ss_pred HHH
Confidence 653
No 281
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.6e-38 Score=314.31 Aligned_cols=198 Identities=26% Similarity=0.349 Sum_probs=160.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 185 (641)
++++||++.+.+++...+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++| .++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~---G~i~~~g--------~i~ 69 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLS---GSVSVPG--------SIA 69 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCC---CeEEEcC--------EEE
Confidence 46899999985321001369999999999999999999999999999999999998875 9999998 599
Q ss_pred EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcC-----CCCCCCCCHHHHHHHHHHH
Q 006548 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerqRv~IA~ 260 (641)
|++|++.++ ..|++||+.+... . ..+...+.++.+++.+..+....+ +..+..||||||||++|||
T Consensus 70 ~~~q~~~l~-~~t~~enl~~~~~------~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~lar 140 (204)
T cd03250 70 YVSQEPWIQ-NGTIRENILFGKP------F--DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLAR 140 (204)
T ss_pred EEecCchhc-cCcHHHHhccCCC------c--CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHH
Confidence 999999888 5699999976321 1 122355666777776555443211 2346789999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
+|+.+|++++|||||+|||+.++..+.+ +++++.++|.|||+++|++. .+.. ||++++|++|+
T Consensus 141 al~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 141 AVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 9999999999999999999999999998 56777666899999999974 5666 99999999985
No 282
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=8e-39 Score=322.88 Aligned_cols=207 Identities=23% Similarity=0.296 Sum_probs=167.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..++++|+++.|+++ ..+.+|+|+|+.+++||+++|+||||||||||+++|+|+++|++ |+|.++|++...
T Consensus 10 ~~l~~~~l~~~~~~~--~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 10 GIVKFQNVTFAYPTR--PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG---GQVLLDGKPISQYEHK 84 (226)
T ss_pred ceEEEEEEEEEeCCC--CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---cEEEECCCchHHcCHH
Confidence 368999999999532 12469999999999999999999999999999999999998875 999999976421
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCcc-ch--HHHHHHHHHHHc--CCchHHhhhhcCCCCCCCCCHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF-CQ--RKNVVEDAIHAM--SLSDYANKLIGGHCYMKGLPCGER 253 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~-~~--~~~~v~~~l~~l--gL~~~~~~~ig~~~~~~~LSGGer 253 (641)
..+.++|++|++.+++ .||+||+.++.... .... .+ ....++++++.+ |+.+..++ .++.||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~------~~~~LSgG~~ 156 (226)
T cd03248 85 YLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC-SFECVKEAAQKAHAHSFISELASGYDTEVGE------KGSQLSGGQK 156 (226)
T ss_pred HHHhhEEEEecccHHHh-hhHHHHhccccCCC-CHHHHHHHHHHcCcHHHHHhccccccchhhc------CCCcCCHHHH
Confidence 1246999999998876 69999997643211 0000 00 112246777777 67666555 3469999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|+++|++. ++. .||++++|++|++
T Consensus 157 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 157 QRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TVE-RADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HHH-hCCEEEEecCCcC
Confidence 999999999999999999999999999999999999999875 689999999875 564 5999999999974
No 283
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=7.4e-38 Score=322.19 Aligned_cols=216 Identities=19% Similarity=0.241 Sum_probs=176.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..++++|+++.++.. .+.+|+|+|+.+++||+++|+|+||||||||+++|+|+++|.+ |+|.++|++...
T Consensus 18 ~~i~~~~l~~~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~i~g~~i~~~~~~ 91 (257)
T cd03288 18 GEIKIHDLCVRYENN---LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFD---GKIVIDGIDISKLPLH 91 (257)
T ss_pred ceEEEEEEEEEeCCC---CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCC---CeEEECCEEhhhCCHH
Confidence 368999999998531 2469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcC-----CCCCCCCCHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGER 253 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGer 253 (641)
..+.++|++|++.+++ .|++||+... .. .....+.++++.+++.+..+....+ +..+..||||||
T Consensus 92 ~~~~~i~~v~q~~~l~~-~tv~~nl~~~------~~--~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~ 162 (257)
T cd03288 92 TLRSRLSIILQDPILFS-GSIRFNLDPE------CK--CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQR 162 (257)
T ss_pred HHhhhEEEECCCCcccc-cHHHHhcCcC------CC--CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHH
Confidence 1346999999998876 5999998431 00 1123455666677776655554311 124568999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|+|+++|++. .+.. ||++++|++|+++..|+++
T Consensus 163 qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~-~dri~~l~~G~i~~~g~~~ 239 (257)
T cd03288 163 QLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TILD-ADLVLVLSRGILVECDTPE 239 (257)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HHHh-CCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999975 4899999999885 5554 9999999999999999987
Q ss_pred HHHH
Q 006548 334 ACLQ 337 (641)
Q Consensus 334 ~~~~ 337 (641)
++.+
T Consensus 240 ~~~~ 243 (257)
T cd03288 240 NLLA 243 (257)
T ss_pred HHHh
Confidence 7643
No 284
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=3.1e-38 Score=310.33 Aligned_cols=176 Identities=27% Similarity=0.399 Sum_probs=149.2
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------CCceEEEEcCCCc--
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-------PYGSYGFVERETT-- 192 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-------~~~~~~yv~Q~~~-- 192 (641)
++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++... ..+.++|++|++.
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQS---GAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 3569999999999999999999999999999999999999875 999999987531 1246899999973
Q ss_pred cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEe
Q 006548 193 LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFID 272 (641)
Q Consensus 193 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLD 272 (641)
++ ..||+||+.+..... .....+..++++++++.+||.+..++.+ ..||||||||++|||||+.+|++||||
T Consensus 81 ~~-~~tv~~nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 81 LF-AADVDQDVAFGPLNL-GLSEAEVERRVREALTAVGASGLRERPT------HCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred cc-cccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCchhhhhCCh------hhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 44 579999998865422 1111123456889999999988877755 499999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 006548 273 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (641)
Q Consensus 273 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (641)
|||+|||+.++..+.+.|++++++|+|||+++|++.
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 999999999999999999999877999999999873
No 285
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=3.1e-38 Score=305.97 Aligned_cols=168 Identities=28% Similarity=0.446 Sum_probs=149.0
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-----~ 180 (641)
++++|+++.+++. .+.+++|+|+.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~~---~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 74 (173)
T cd03246 1 LEVENVSFRYPGA---EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTS---GRVRLDGADISQWDPNEL 74 (173)
T ss_pred CEEEEEEEEcCCC---CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CeEEECCEEcccCCHHHH
Confidence 3689999988531 2469999999999999999999999999999999999999875 999999987532 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
.+.++|++|++.+++ .||+||+ ||||||||++|||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~~~l--------------------------------------------LS~G~~qrv~la~ 109 (173)
T cd03246 75 GDHVGYLPQDDELFS-GSIAENI--------------------------------------------LSGGQRQRLGLAR 109 (173)
T ss_pred HhheEEECCCCcccc-CcHHHHC--------------------------------------------cCHHHHHHHHHHH
Confidence 346899999998887 4998876 8999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++. .+ +.||++++|++|++
T Consensus 110 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 110 ALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999877999999999874 55 57999999999974
No 286
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.2e-38 Score=355.86 Aligned_cols=218 Identities=21% Similarity=0.272 Sum_probs=180.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-CCCceeEEEECCEeCCCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH-SARMYGEVFVNGAKSEMP-- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~-~~~~~G~I~~~G~~~~~~-- 180 (641)
..++++|+++.+... +.+.+|+|+|+++++||+++|+||||||||||||+|+|+.+| .+ |+|.++|++....
T Consensus 256 ~~l~~~~l~~~~~~~--~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~---G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 256 VILEARNLTCWDVIN--PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFE---GNVFINGKPVDIRNP 330 (500)
T ss_pred ceEEEeCCccccccc--ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCC---eEEEECCEECCCCCH
Confidence 368999999876311 124699999999999999999999999999999999999985 54 9999999875321
Q ss_pred ----CceEEEEcCCC---ccCCCCCHHHHHHHHHHhcCC---C-ccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCC
Q 006548 181 ----YGSYGFVERET---TLIGSLTVREYLYYSALLQLP---G-FFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGL 248 (641)
Q Consensus 181 ----~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~---~-~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~L 248 (641)
++.++|++|+. .+++.+||+||+.++..-... . .....+++++++++.+++.+ ..++.+ ..|
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~L 404 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI------GRL 404 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc------ccC
Confidence 24689999995 588999999999875321110 0 11123456889999999963 456644 499
Q ss_pred CHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 006548 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (641)
Q Consensus 249 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (641)
||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|.|||+++|++ +++.++||++++|++|+++.
T Consensus 405 SgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~ 483 (500)
T TIGR02633 405 SGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL-AEVLGLSDRVLVIGEGKLKG 483 (500)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999998899999988887 58889999999999999998
Q ss_pred EeChh
Q 006548 329 FGETL 333 (641)
Q Consensus 329 ~G~~~ 333 (641)
.++..
T Consensus 484 ~~~~~ 488 (500)
T TIGR02633 484 DFVNH 488 (500)
T ss_pred EEccc
Confidence 77653
No 287
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.1e-38 Score=366.73 Aligned_cols=216 Identities=27% Similarity=0.383 Sum_probs=183.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++.|++ ..+.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 455 ~i~~~~vsf~y~~---~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~---G~I~idg~~i~~~~~~~ 528 (694)
T TIGR01846 455 AITFENIRFRYAP---DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH---GQVLVDGVDLAIADPAW 528 (694)
T ss_pred eEEEEEEEEEcCC---CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEehhhCCHHH
Confidence 6999999999953 23469999999999999999999999999999999999999975 999999987542
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.++.++||+|++.+|+ .|++||+.++ .+. ..++.+.++++..++.+..++.+.|.+ ...+|||||||
T Consensus 529 ~r~~i~~v~q~~~lf~-~ti~eNi~~~----~~~---~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~q 600 (694)
T TIGR01846 529 LRRQMGVVLQENVLFS-RSIRDNIALC----NPG---APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQ 600 (694)
T ss_pred HHHhCeEEccCCeehh-hhHHHHHhcC----CCC---CCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHH
Confidence 1356999999999886 5999999653 111 235668888999998877665543322 34679999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+++|++||||||||+||+.++..+.+.|+++. +++|+|+++|++. .+ +.||+|++|++|++++.|+.++
T Consensus 601 ri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~-~~~d~ii~l~~G~i~~~g~~~~ 677 (694)
T TIGR01846 601 RIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS-TV-RACDRIIVLEKGQIAESGRHEE 677 (694)
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH-HH-HhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999985 5789999999984 44 5699999999999999999887
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+.+
T Consensus 678 l~~ 680 (694)
T TIGR01846 678 LLA 680 (694)
T ss_pred HHH
Confidence 754
No 288
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6.8e-38 Score=312.01 Aligned_cols=197 Identities=22% Similarity=0.302 Sum_probs=163.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.++.. .+.+|+|+|+.+++||+++|+|+||||||||+++|+|+.+|.. |+|.++|.+...
T Consensus 6 ~l~~~~l~~~~~~~---~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 79 (207)
T cd03369 6 EIEVENLSVRYAPD---LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE---GKIEIDGIDISTIPLED 79 (207)
T ss_pred eEEEEEEEEEeCCC---CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CeEEECCEEhHHCCHHH
Confidence 58999999998531 2469999999999999999999999999999999999998875 999999987421
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
..+.++|++|++.+++ .||+||+.+.. . . ..+.+.+.++ .+ ..+..||||||||++||
T Consensus 80 ~~~~i~~v~q~~~~~~-~tv~~~l~~~~-----~-~--~~~~~~~~l~-------~~------~~~~~LS~G~~qrv~la 137 (207)
T cd03369 80 LRSSLTIIPQDPTLFS-GTIRSNLDPFD-----E-Y--SDEEIYGALR-------VS------EGGLNLSQGQRQLLCLA 137 (207)
T ss_pred HHhhEEEEecCCcccC-ccHHHHhcccC-----C-C--CHHHHHHHhh-------cc------CCCCcCCHHHHHHHHHH
Confidence 1346999999998886 59999996421 1 1 1122333333 12 24569999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
|+|+.+|++|||||||+|||+.++..+.+.|+++. +|.|+|+++|++. ++.. ||++++|++|+++..|++
T Consensus 138 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 138 RALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHhh-CCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999999999985 4899999888875 5555 999999999999988763
No 289
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=6.5e-38 Score=357.93 Aligned_cols=217 Identities=22% Similarity=0.345 Sum_probs=183.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++|+++.|+.. ..+.+|+|+|++++|||.++|+|+||||||||+|+|+|+++|.+ |+|.+||.+....
T Consensus 337 ~i~~~~v~f~y~~~--~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~---G~I~i~g~~i~~~~~~~ 411 (576)
T TIGR02204 337 EIEFEQVNFAYPAR--PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQS---GRILLDGVDLRQLDPAE 411 (576)
T ss_pred eEEEEEEEEECCCC--CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CEEEECCEEHHhcCHHH
Confidence 58999999999632 12579999999999999999999999999999999999999875 9999999875321
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
++.++|++|++.+|+ .|++||+.++. +. ..++++.++++.+|+.+..++...|.+ ....|||||||
T Consensus 412 ~~~~i~~~~Q~~~lf~-~Ti~~Ni~~~~----~~---~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q 483 (576)
T TIGR02204 412 LRARMALVPQDPVLFA-ASVMENIRYGR----PD---ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ 483 (576)
T ss_pred HHHhceEEccCCcccc-ccHHHHHhcCC----CC---CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH
Confidence 246999999999885 59999997631 11 235678899999999877766544322 34569999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++||||++.+|++|+||||||+||+.+++.+++.|+++. +++|+|+++|++. ....||+|++|++|+++..|+.++
T Consensus 484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~~ 560 (576)
T TIGR02204 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHAE 560 (576)
T ss_pred HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHHH
Confidence 9999999999999999999999999999999999999985 4799999999983 457799999999999999999877
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
..+
T Consensus 561 l~~ 563 (576)
T TIGR02204 561 LIA 563 (576)
T ss_pred HHH
Confidence 643
No 290
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5.9e-38 Score=357.52 Aligned_cols=216 Identities=22% Similarity=0.257 Sum_probs=181.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.|+. ..+.+|+|+|+++++||.++|+||||||||||+++|+|+++|++ |+|.+||.+...
T Consensus 313 ~I~~~~v~~~y~~---~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~---G~i~~~g~~~~~~~~~~ 386 (569)
T PRK10789 313 ELDVNIRQFTYPQ---TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSE---GDIRFHDIPLTKLQLDS 386 (569)
T ss_pred cEEEEEEEEECCC---CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CEEEECCEEHhhCCHHH
Confidence 5899999999853 23469999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCC-----CCCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerq 254 (641)
.++.++|++|++.+|+ .|++||+.++. +. ..++.++++++..++.+...+.+.|. .....|||||||
T Consensus 387 ~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~~---~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~q 458 (569)
T PRK10789 387 WRSRLAVVSQTPFLFS-DTVANNIALGR----PD---ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQ 458 (569)
T ss_pred HHhheEEEccCCeecc-ccHHHHHhcCC----CC---CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 1356999999999986 59999997631 11 23456778888888876655443322 234679999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+++|++|||||||++||+.++..+.+.|+++. +|+|+|+++|++. ..+.||+|++|++|+++..|+.++
T Consensus 459 Ri~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~ 535 (569)
T PRK10789 459 RISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQ 535 (569)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999999999985 5899999999984 346799999999999999999887
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+.+
T Consensus 536 l~~ 538 (569)
T PRK10789 536 LAQ 538 (569)
T ss_pred HHH
Confidence 654
No 291
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.6e-38 Score=354.10 Aligned_cols=211 Identities=21% Similarity=0.311 Sum_probs=178.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.+.++|+++ .+|+|+|+.+++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++....
T Consensus 257 ~l~~~~l~~----------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~---G~I~~~g~~i~~~~~~~ 323 (501)
T PRK10762 257 RLKVDNLSG----------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTS---GYVTLDGHEVVTRSPQD 323 (501)
T ss_pred EEEEeCccc----------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHHH
Confidence 578888863 37999999999999999999999999999999999998875 9999999875321
Q ss_pred --CceEEEEcCCC---ccCCCCCHHHHHHHHHHhcC----C-CccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCC
Q 006548 181 --YGSYGFVERET---TLIGSLTVREYLYYSALLQL----P-GFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (641)
Q Consensus 181 --~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~----~-~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LS 249 (641)
++.++|++|++ .+++.+||+||+.+...... . ....+.+++++++++.++|. +..++.+ ..||
T Consensus 324 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LS 397 (501)
T PRK10762 324 GLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI------GLLS 397 (501)
T ss_pred HHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch------hhCC
Confidence 24699999995 57888999999987532111 0 01112345688999999995 5666655 4999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 006548 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (641)
Q Consensus 250 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (641)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ +++.++||++++|++|+++..
T Consensus 398 gGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~ 476 (501)
T PRK10762 398 GGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM-PEVLGMSDRILVMHEGRISGE 476 (501)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999988899999988886 588999999999999999999
Q ss_pred eChhHH
Q 006548 330 GETLAC 335 (641)
Q Consensus 330 G~~~~~ 335 (641)
|+++++
T Consensus 477 ~~~~~~ 482 (501)
T PRK10762 477 FTREQA 482 (501)
T ss_pred eccccC
Confidence 987654
No 292
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=3.6e-38 Score=306.77 Aligned_cols=174 Identities=23% Similarity=0.392 Sum_probs=151.8
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----~~ 181 (641)
++++|+++.++++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|.+... ..
T Consensus 1 i~~~~~~~~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 74 (178)
T cd03247 1 LSINNVSFSYPEQ---EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQ---GEITLDGVPVSDLEKALS 74 (178)
T ss_pred CEEEEEEEEeCCC---CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CEEEECCEEHHHHHHHHH
Confidence 4689999988531 1369999999999999999999999999999999999998875 999999986421 13
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++|++.+++ .|++||+ + ..||||||||++||||
T Consensus 75 ~~i~~~~q~~~~~~-~tv~~~i-----------------------------------~------~~LS~G~~qrv~lara 112 (178)
T cd03247 75 SLISVLNQRPYLFD-TTLRNNL-----------------------------------G------RRFSGGERQRLALARI 112 (178)
T ss_pred hhEEEEccCCeeec-ccHHHhh-----------------------------------c------ccCCHHHHHHHHHHHH
Confidence 46899999988875 6998876 2 3899999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
|+.+|++|||||||+|||+.++..+++.|+++. ++.|+|+++|++. ++ ..||++++|++|++++.|
T Consensus 113 l~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 113 LLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999996 5889999999875 55 469999999999998754
No 293
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-38 Score=355.99 Aligned_cols=212 Identities=19% Similarity=0.266 Sum_probs=178.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++|+++ +.+++|+|+.+++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++....
T Consensus 257 ~l~~~~~~~---------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 257 RLRLDGLKG---------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTA---GQVYLDGKPIDIRSPRD 324 (501)
T ss_pred EEEEecccc---------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCC---ceEEECCEECCCCCHHH
Confidence 578888863 148999999999999999999999999999999999998875 9999999875321
Q ss_pred --CceEEEEcCCC---ccCCCCCHHHHHHHHHHhcC-C-C---ccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCC
Q 006548 181 --YGSYGFVERET---TLIGSLTVREYLYYSALLQL-P-G---FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (641)
Q Consensus 181 --~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~-~-~---~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LS 249 (641)
++.++|++|++ .+++.+|+.||+.++..... + . .....++.++++++.+++. +..++.+ ..||
T Consensus 325 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LS 398 (501)
T PRK11288 325 AIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI------MNLS 398 (501)
T ss_pred HHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc------ccCC
Confidence 24689999986 48889999999976432110 0 0 1112335688999999994 5667655 4999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 006548 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (641)
Q Consensus 250 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (641)
|||||||+|||+|+.+|++|||||||+|||+.++..++++|++++++|.|||+++|+. +++.++||++++|++|++++.
T Consensus 399 gGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~i~~l~~g~i~~~ 477 (501)
T PRK11288 399 GGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL-PEVLGVADRIVVMREGRIAGE 477 (501)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999998899999988887 588999999999999999999
Q ss_pred eChhHH
Q 006548 330 GETLAC 335 (641)
Q Consensus 330 G~~~~~ 335 (641)
|+++++
T Consensus 478 ~~~~~~ 483 (501)
T PRK11288 478 LAREQA 483 (501)
T ss_pred EccccC
Confidence 987653
No 294
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=7.1e-37 Score=352.68 Aligned_cols=218 Identities=23% Similarity=0.256 Sum_probs=186.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++|+++.|+..+ +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++....
T Consensus 4 ~l~~~nl~~~y~~~~-~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 4 LLELKDIRRSYPSGE-EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTS---GTYRVAGQDVATLDADA 79 (648)
T ss_pred EEEEeeEEEEeCCCC-CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEcCcCCHHH
Confidence 589999999995321 23569999999999999999999999999999999999999875 9999999875321
Q ss_pred -----CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
++.++|++|+..+++.+|+.||+.+...... ....+.++++.++++.+||.+..++.+ ..||||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~lgl~~~~~~~~------~~LS~Gq~qr 152 (648)
T PRK10535 80 LAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAG-LERKQRLLRAQELLQRLGLEDRVEYQP------SQLSGGQQQR 152 (648)
T ss_pred HHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCChhhhcCCc------ccCCHHHHHH
Confidence 2469999999999999999999987653221 111234567889999999998877755 4999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++. .+ +.||++++|++|++++.|++++.
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~ 230 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ-VA-AQAERVIEIRDGEIVRNPPAQEK 230 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HH-HhCCEEEEEECCEEEeecCcccc
Confidence 99999999999999999999999999999999999999877999999999874 44 57999999999999999987654
No 295
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-37 Score=302.71 Aligned_cols=229 Identities=21% Similarity=0.332 Sum_probs=196.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||++++.++ ++||++||+++++||+.+||||||||||||.++|+|.-. ...++|+|.++|+++..
T Consensus 3 ~L~I~dLhv~v~~~----keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~-Y~Vt~G~I~~~GedI~~l~~~E 77 (251)
T COG0396 3 MLEIKDLHVEVEGK----KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEGEILFDGEDILELSPDE 77 (251)
T ss_pred eeEEeeeEEEecCc----hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC-ceEecceEEECCcccccCCHhH
Confidence 68999999999532 589999999999999999999999999999999999743 23467999999998532
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCc--cchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCCCHHHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF--FCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~--~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqR 255 (641)
.+..+..-+|.|.=+|..|+.+.|..+.+.+.... ..+-.+.+++.++.+++.+ +++|.++ .++|||||||
T Consensus 78 RAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN-----~GFSGGEkKR 152 (251)
T COG0396 78 RARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN-----EGFSGGEKKR 152 (251)
T ss_pred HHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC-----CCcCcchHHH
Confidence 13457788999999999999999988766543221 1234567889999999976 8888776 5899999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcC--CEEEEEeCCeEEEEeChh
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF--DRICLLSNGNTLFFGETL 333 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~--D~v~vL~~G~iv~~G~~~ 333 (641)
..|+..++.+|++.|||||-||||..+-+.|-+.++.++++|.+++++||+. .+..+. |+|.+|.+|+||..|.+
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~- 229 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP- 229 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH-
Confidence 9999999999999999999999999999999999999999999999988886 566665 99999999999999999
Q ss_pred HHHHHhhhcCCCC
Q 006548 334 ACLQHFSNAGFPC 346 (641)
Q Consensus 334 ~~~~~f~~~g~~~ 346 (641)
++.+.+++.|+.|
T Consensus 230 el~~~le~~gy~~ 242 (251)
T COG0396 230 ELAEELEEKGYDW 242 (251)
T ss_pred HHHHHHHHhchHH
Confidence 8888888888754
No 296
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=4.4e-38 Score=306.77 Aligned_cols=174 Identities=30% Similarity=0.484 Sum_probs=148.7
Q ss_pred EEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC-----
Q 006548 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY----- 181 (641)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~----- 181 (641)
+++|+++.|+ .+.+|+|+|+.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+.....
T Consensus 1 ~~~~l~~~~~-----~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~---G~v~~~g~~~~~~~~~~~~ 72 (180)
T cd03214 1 EVENLSVGYG-----GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSS---GEILLDGKDLASLSPKELA 72 (180)
T ss_pred CeeEEEEEEC-----CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCcCCHHHHH
Confidence 3688999884 2469999999999999999999999999999999999998875 99999998653210
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.++|++| +++.+|+.+..++. +..||||||||++|||+
T Consensus 73 ~~i~~~~q-----------------------------------~l~~~gl~~~~~~~------~~~LS~G~~qrl~lara 111 (180)
T cd03214 73 RKIAYVPQ-----------------------------------ALELLGLAHLADRP------FNELSGGERQRVLLARA 111 (180)
T ss_pred HHHhHHHH-----------------------------------HHHHcCCHhHhcCC------cccCCHHHHHHHHHHHH
Confidence 12333333 77888888776664 45999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
|+.+|+++||||||+|||+.++..+.+.|++++++ |.|+|+++|++. ++.++||++++|++|++++.|
T Consensus 112 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 112 LAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999876 899999888874 778999999999999998654
No 297
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.5e-37 Score=355.01 Aligned_cols=215 Identities=23% Similarity=0.293 Sum_probs=179.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.|++ .+++|+|+|+++++||.++|+||||||||||+++|+|+++|++ |+|.+||.+...
T Consensus 334 ~i~~~~v~~~y~~----~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g~~~~~~~~~~ 406 (585)
T TIGR01192 334 AVEFRHITFEFAN----SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTV---GQILIDGIDINTVTRES 406 (585)
T ss_pred eEEEEEEEEECCC----CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCC---CEEEECCEEhhhCCHHH
Confidence 5999999999853 2468999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCC-----CCCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerq 254 (641)
.++.++||+|++.+++ .|++||+.++. +. ..++.+.++++..++.+...+.++|. .....|||||||
T Consensus 407 ~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~~---~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~q 478 (585)
T TIGR01192 407 LRKSIATVFQDAGLFN-RSIRENIRLGR----EG---ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQ 478 (585)
T ss_pred HHhheEEEccCCccCc-ccHHHHHhcCC----CC---CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHH
Confidence 1357999999999885 69999997641 11 12345667777777766554443221 245679999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++. +++|+|+++|++. .+ +.||+|++|++|+++..|+.++
T Consensus 479 rl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 555 (585)
T TIGR01192 479 RLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS-TV-RNADLVLFLDQGRLIEKGSFQE 555 (585)
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH-HH-HcCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999885 5899999999984 44 6699999999999999999877
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
..+
T Consensus 556 l~~ 558 (585)
T TIGR01192 556 LIQ 558 (585)
T ss_pred HHH
Confidence 654
No 298
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.3e-37 Score=330.70 Aligned_cols=186 Identities=27% Similarity=0.447 Sum_probs=161.7
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccch
Q 006548 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ 217 (641)
Q Consensus 141 IiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~ 217 (641)
|+||||||||||||+|+|+.+|++ |+|.++|++... ..+.++|++|+..+++.+||+||+.|+...+. ....+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~---G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~-~~~~~ 76 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDS---GSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRK-VPRAE 76 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcC-CCHHH
Confidence 689999999999999999999875 999999987532 23569999999999999999999998754321 11112
Q ss_pred HHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 006548 218 RKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST- 296 (641)
Q Consensus 218 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~- 296 (641)
.+++++++++.++|.+..++.+ .+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++
T Consensus 77 ~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 77 IKPRVLEALRLVQLEEFADRKP------HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHcCCcchhcCCh------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 3457889999999998887754 499999999999999999999999999999999999999999999999865
Q ss_pred CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 297 GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 297 g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|+|+|+++|++ .++.++||++++|++|+++..|+++++.+
T Consensus 151 g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 151 GITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 89999988887 57899999999999999999999988754
No 299
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.5e-37 Score=309.31 Aligned_cols=201 Identities=23% Similarity=0.256 Sum_probs=162.2
Q ss_pred EEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------
Q 006548 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------- 179 (641)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~------- 179 (641)
.+.|+.+.++. .+.+++|+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.++|.+...
T Consensus 2 ~~~~~~~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~~ 74 (218)
T cd03290 2 QVTNGYFSWGS----GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLE---GKVHWSNKNESEPSFEATR 74 (218)
T ss_pred eeeeeEEecCC----CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CeEEECCcccccccccccc
Confidence 46788888742 2569999999999999999999999999999999999998875 999999975421
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcC-----CCCCCCCCHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGE 252 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGe 252 (641)
.++.++|++|++.++ ..|++||+.+... . ..+..+++++.+++.+..+....+ +..+..|||||
T Consensus 75 ~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~----~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~ 145 (218)
T cd03290 75 SRNRYSVAYAAQKPWLL-NATVEENITFGSP----F----NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQ 145 (218)
T ss_pred hhhcceEEEEcCCCccc-cccHHHHHhhcCc----C----CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHH
Confidence 124699999999887 5799999976421 1 122345677788886655432110 23567999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHH--HHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV--TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~--~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
||||+|||+|+.+|++|||||||+|||+.++..+++ +++.++++|.|+|+++|++. .+ ..||++++|++|.
T Consensus 146 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 146 RQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence 999999999999999999999999999999999998 67777666899999999885 45 5699999999884
No 300
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.3e-37 Score=383.26 Aligned_cols=221 Identities=20% Similarity=0.292 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--------------------
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-------------------- 164 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~-------------------- 164 (641)
.++++||+|.|+++ ..+++|+|+|+++++|+.+||+||||||||||+++|.|+++|..
T Consensus 1165 ~I~f~nVsF~Y~~~--~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR--PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred eEEEEEEEEECCCC--CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 59999999999642 23579999999999999999999999999999999999998720
Q ss_pred -------------------------------CceeEEEECCEeCCC-----CCceEEEEcCCCccCCCCCHHHHHHHHHH
Q 006548 165 -------------------------------RMYGEVFVNGAKSEM-----PYGSYGFVERETTLIGSLTVREYLYYSAL 208 (641)
Q Consensus 165 -------------------------------~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~ 208 (641)
..+|+|++||.++.. .++.++||+|++.|| +.|++|||.++.
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~- 1320 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGK- 1320 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCC-
Confidence 036999999998632 245799999999998 579999998751
Q ss_pred hcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHH
Q 006548 209 LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (641)
Q Consensus 209 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~ 283 (641)
+. ..++.++++++..++.++...++.|.+ ....||||||||++|||||+++|+|||||||||+||+.+.
T Consensus 1321 ---~~---at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE 1394 (1466)
T PTZ00265 1321 ---ED---ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSE 1394 (1466)
T ss_pred ---CC---CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 11 245668999999999887766554432 3456999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeC----CeEE-EEeChhHHHH
Q 006548 284 LLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSN----GNTL-FFGETLACLQ 337 (641)
Q Consensus 284 ~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~----G~iv-~~G~~~~~~~ 337 (641)
+.|.+.|+++. .+++|+|+++|+++ ..+.||+|++|++ |+++ +.|+.+++++
T Consensus 1395 ~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1395 KLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 99999999986 46899999999974 4567999999999 9955 8999887753
No 301
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-37 Score=310.98 Aligned_cols=190 Identities=26% Similarity=0.335 Sum_probs=166.0
Q ss_pred eEEEEeEEEEEeccc--cc--ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC
Q 006548 105 SVVWKDLTVTIKGKR--RY--SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~--~~--~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~ 180 (641)
.++++||++.|..+. .. ..++++||||.+++||+++|+|+||||||||-|+|.|+.+|++ |+|+++|++....
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~---G~i~f~g~~i~~~ 80 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTS---GEILFEGKDITKL 80 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCC---ceEEEcCcchhhc
Confidence 589999999996532 11 2479999999999999999999999999999999999999976 9999999864211
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
. ..+..+++.++|+.+||.+ .+++ +|++||||||||++||
T Consensus 81 ~---------------------------------~~~~~~~v~elL~~Vgl~~~~~~r------yPhelSGGQrQRi~IA 121 (268)
T COG4608 81 S---------------------------------KEERRERVLELLEKVGLPEEFLYR------YPHELSGGQRQRIGIA 121 (268)
T ss_pred c---------------------------------hhHHHHHHHHHHHHhCCCHHHhhc------CCcccCchhhhhHHHH
Confidence 1 1135567999999999864 5555 6789999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|||+.+|+++++|||+|+||...+.+++++|++++++ |.|.++++|+. ..+..++|||.+|..|++|+.|+.++++.
T Consensus 122 RALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 122 RALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDL-SVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred HHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEH-HhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 9999999999999999999999999999999999955 99999988876 58999999999999999999999998864
No 302
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-37 Score=320.30 Aligned_cols=229 Identities=23% Similarity=0.284 Sum_probs=196.9
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSE--- 178 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~--~~~G~I~~~G~~~~--- 178 (641)
..+.++||++.+.... +...++++|||.+++||.+||+|+||||||-..+.+.|+++... ..+|+|.++|++.-
T Consensus 5 ~lL~v~nLsV~f~~~~-~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 5 PLLSIRNLSVAFHQEG-GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred cceeeeccEEEEecCC-cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 4689999999996432 46789999999999999999999999999999999999997632 35799999998731
Q ss_pred ------CCCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCH
Q 006548 179 ------MPYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (641)
Q Consensus 179 ------~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSG 250 (641)
.+-.+|++++|++ .|.|-.|+..-+....+++........++++.++|+.+|+.+-..++ +.||++|||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl---~~yPHeLSG 160 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRL---DAYPHELSG 160 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhh---hhCCcccCc
Confidence 1124699999997 67888999988887776654433334677899999999998777665 569999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 006548 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (641)
Q Consensus 251 GerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (641)
||||||.||+||+.+|++||.||||++||...+.+|+++|++|.++ |..+++++|+. .-+.+++|||+||.+|++|+.
T Consensus 161 GqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL-~iVr~~ADrV~VM~~G~ivE~ 239 (534)
T COG4172 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL-GIVRKFADRVYVMQHGEIVET 239 (534)
T ss_pred chhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH-HHHHHhhhhEEEEeccEEeec
Confidence 9999999999999999999999999999999999999999999855 99999987776 589999999999999999999
Q ss_pred eChhHHHH
Q 006548 330 GETLACLQ 337 (641)
Q Consensus 330 G~~~~~~~ 337 (641)
|.+++++.
T Consensus 240 ~~t~~lF~ 247 (534)
T COG4172 240 GTTETLFA 247 (534)
T ss_pred CcHHHHhh
Confidence 99988763
No 303
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.6e-36 Score=315.64 Aligned_cols=204 Identities=22% Similarity=0.314 Sum_probs=167.0
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..++++|+++. .+.+|+|+|+.+++||+++|+|+||||||||+++|+|+++|.. |+|.++| .
T Consensus 38 ~~l~i~nls~~-------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~---G~I~i~g--------~ 99 (282)
T cd03291 38 NNLFFSNLCLV-------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSE---GKIKHSG--------R 99 (282)
T ss_pred CeEEEEEEEEe-------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC--------E
Confidence 46899999984 1469999999999999999999999999999999999999875 9999988 3
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcC-----CCCCCCCCHHHHHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRRVRI 258 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerqRv~I 258 (641)
++|++|++.+++. ||+||+.+.... ...++.+.++.+++.+..+....+ ...+..||||||||++|
T Consensus 100 i~yv~q~~~l~~~-tv~enl~~~~~~--------~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~l 170 (282)
T cd03291 100 ISFSSQFSWIMPG-TIKENIIFGVSY--------DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISL 170 (282)
T ss_pred EEEEeCccccccc-CHHHHhhccccc--------CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHH
Confidence 8999999988874 999999763210 112344566667776655443211 12346899999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTL-KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L-~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||+|+.+|++|||||||+|||+.++..+.+.+ +++. ++.|||+++|++. .+ ..||++++|++|++++.|+++++.+
T Consensus 171 AraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 171 ARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999865 5554 4789999888875 45 5799999999999999999887653
No 304
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=2.4e-37 Score=329.77 Aligned_cols=213 Identities=22% Similarity=0.304 Sum_probs=186.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 180 (641)
..++++|+++.|+ ...+++|||+.+++||+.||+|+||||||||+++|.|.++|++ |+|.++|++....
T Consensus 3 ~~l~~~~itK~f~-----~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~---GeI~v~G~~v~~~sP~ 74 (501)
T COG3845 3 PALEMRGITKRFP-----GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDS---GEIRVDGKEVRIKSPR 74 (501)
T ss_pred ceEEEeccEEEcC-----CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCc---ceEEECCEEeccCCHH
Confidence 3589999999994 5679999999999999999999999999999999999999986 9999999975432
Q ss_pred ---CceEEEEcCCCccCCCCCHHHHHHHHHHhcCC--CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH
Q 006548 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLP--GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~--~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (641)
+..||+|.|+..|++++||.||+..+..-... ......+++++++.+..||.=-.|.+++ +||-|||||
T Consensus 75 dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~------dLsVG~qQR 148 (501)
T COG3845 75 DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA------DLSVGEQQR 148 (501)
T ss_pred HHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee------cCCcchhHH
Confidence 24699999999999999999999876432110 1122356789999999999866666554 999999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
|.|-++|.++|++|||||||+-|-|....++++.|++++++|+|||+++|.. .|+.++|||+.||.+|+++..-+
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKL-KEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999999999999999999999999999999999999988876 69999999999999999987665
No 305
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.9e-37 Score=348.81 Aligned_cols=211 Identities=18% Similarity=0.214 Sum_probs=176.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++|++. .+|+|+|+.+++||+++|+||||||||||+|+|+|+.+|++ |+|.++|.+....
T Consensus 268 ~l~~~~l~~----------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~i~~~~~~~ 334 (510)
T PRK15439 268 VLTVEDLTG----------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARG---GRIMLNGKEINALSTAQ 334 (510)
T ss_pred eEEEeCCCC----------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---cEEEECCEECCCCCHHH
Confidence 588888872 26999999999999999999999999999999999998875 9999999875321
Q ss_pred --CceEEEEcCCC---ccCCCCCHHHHHHHHHHh--cCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHH
Q 006548 181 --YGSYGFVERET---TLIGSLTVREYLYYSALL--QLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 181 --~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~--~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGe 252 (641)
++.++|++|+. .+++.+|+.||+...... .........++.++++++.+||. +..++.+ ..|||||
T Consensus 335 ~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgG~ 408 (510)
T PRK15439 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA------RTLSGGN 408 (510)
T ss_pred HHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc------ccCCcHH
Confidence 24689999984 478889999998642111 11001112345688999999996 6677654 4999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ +++.++||++++|++|+++..|.+
T Consensus 409 kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~~ 487 (510)
T PRK15439 409 QQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDL-EEIEQMADRVLVMHQGEISGALTG 487 (510)
T ss_pred HHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEcc
Confidence 9999999999999999999999999999999999999999988899999988887 588999999999999999999877
Q ss_pred hHH
Q 006548 333 LAC 335 (641)
Q Consensus 333 ~~~ 335 (641)
+++
T Consensus 488 ~~~ 490 (510)
T PRK15439 488 AAI 490 (510)
T ss_pred ccC
Confidence 543
No 306
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=3.9e-37 Score=349.64 Aligned_cols=210 Identities=18% Similarity=0.218 Sum_probs=178.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 180 (641)
..++++||++.|++++...+.+|+|+|+++++||++||+||||||||||+++|+|+++|++ |+|.+||.+....
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~---G~i~~~g~~i~~~~~~ 412 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE---GEILLDGAAVSADSRD 412 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHH
Confidence 3699999999996421112469999999999999999999999999999999999999975 9999999886431
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
++.++||+|++.+|. .|+++|.. + ...+++++++++.+++.+..+..++|.+....||||||||++|
T Consensus 413 ~~~~~i~~v~q~~~lf~-~ti~~n~~-------~---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlal 481 (555)
T TIGR01194 413 DYRDLFSAIFADFHLFD-DLIGPDEG-------E---HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLAL 481 (555)
T ss_pred HHHhhCcEEccChhhhh-hhhhcccc-------c---chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHH
Confidence 256899999998885 48888841 1 1245568899999999998888777777778999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK-KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~-~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (641)
||||+.+|++|||||||++||+.++..+.+.+. .+..+|+|+|+++|++. ..+.||+|++|++|+++..
T Consensus 482 aRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 482 ICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999998664 56567899999999874 4578999999999999854
No 307
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-37 Score=345.35 Aligned_cols=207 Identities=18% Similarity=0.261 Sum_probs=173.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 185 (641)
++++|++++|. .+.+|+|+|+++++||+++|+||||||||||||+|+|+++|+. |+|.++|. ..++
T Consensus 2 l~i~~ls~~~~-----~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~---G~i~~~~~------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFG-----AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSA---GNVSLDPN------ERLG 67 (530)
T ss_pred EEEEEEEEEeC-----CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCC------CEEE
Confidence 68999999984 3469999999999999999999999999999999999998875 99999873 3589
Q ss_pred EEcCCCccCCCCCHHHHHHHHHH-h-----------cCCC---c----------------cchHHHHHHHHHHHcCCchH
Q 006548 186 FVERETTLIGSLTVREYLYYSAL-L-----------QLPG---F----------------FCQRKNVVEDAIHAMSLSDY 234 (641)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~-~-----------~~~~---~----------------~~~~~~~v~~~l~~lgL~~~ 234 (641)
|++|++.+++.+||+|++.++.. . ..+. . ..+.+++++++++.+||.+.
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 99999989999999999976421 0 0000 0 00123568889999999764
Q ss_pred H-hhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHh
Q 006548 235 A-NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 313 (641)
Q Consensus 235 ~-~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~ 313 (641)
. ++. +..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||+++|+. ..+.+
T Consensus 148 ~~~~~------~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~-~~~~~ 217 (530)
T PRK15064 148 QHYGL------MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDR-HFLNS 217 (530)
T ss_pred HhcCc------hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCH-HHHHh
Confidence 4 333 459999999999999999999999999999999999999999999864 588999988876 57889
Q ss_pred cCCEEEEEeCCeE-EEEeChhHHH
Q 006548 314 LFDRICLLSNGNT-LFFGETLACL 336 (641)
Q Consensus 314 ~~D~v~vL~~G~i-v~~G~~~~~~ 336 (641)
+||+|++|++|++ ++.|++++..
T Consensus 218 ~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 218 VCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred hcceEEEEeCCEEEEecCCHHHHH
Confidence 9999999999999 5889887654
No 308
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=9.7e-37 Score=305.31 Aligned_cols=195 Identities=15% Similarity=0.127 Sum_probs=159.3
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-ECCEeCCCCCceEEEEcCCCccCCCCCHHHH
Q 006548 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-VNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (641)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~-~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (641)
.+|+|||+++++||+++|+||||||||||+|+|+|+.+|++ |+|. ++|... .+.++..+++.+|++||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~s---G~i~~~~~~~~--------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDE---GDFIGLRGDAL--------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCC---CCEEEecCcee--------ccccccccCCcCcHHHH
Confidence 37999999999999999999999999999999999998875 9997 777532 12345678899999999
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHH
Q 006548 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282 (641)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~ 282 (641)
+.+...... . ..++..+.+.+.++|.+..++.++ .||||||||++|||||+.+|+++||||||++||+.+
T Consensus 70 l~~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~~~~~------~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~ 139 (213)
T PRK15177 70 ARMMASLYG-L---DGDEFSHFCYQLTQLEQCYTDRVS------EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNAT 139 (213)
T ss_pred HHHHHHHcC-C---CHHHHHHHHHHHhChhHHhhchHh------hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHH
Confidence 988654321 1 112223344566788877777654 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHhhh
Q 006548 283 ALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341 (641)
Q Consensus 283 ~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~ 341 (641)
+..+.+.|.+..+ ++++|+++|++ .++..+||++++|++|++++.|+.+++.++++.
T Consensus 140 ~~~~~~~l~~~~~-~~~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 140 QLRMQAALACQLQ-QKGLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHhh-CCcEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 9999998865443 35788877776 478889999999999999999999888766543
No 309
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.3e-37 Score=301.20 Aligned_cols=190 Identities=22% Similarity=0.284 Sum_probs=159.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCceE
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGSY 184 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-~~~~~ 184 (641)
++++|+++++. .+.++ ++|+++++||+++|+|+||||||||+++|+|+.+|++ |+|.++|.+... ..+.+
T Consensus 2 l~~~~l~~~~~-----~~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 2 LSLHQLQFNIE-----QKNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSS---GNIYYKNCNINNIAKPYC 72 (195)
T ss_pred eEEEEeeEEEC-----CcEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCcccChhhhhhE
Confidence 67999999984 23455 4999999999999999999999999999999999875 999999986532 12458
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHh
Q 006548 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~ 264 (641)
+|++|+..+++.+||+||+.+..... ...++++++++.+++.+..++.+ +.||||||||++|||||+.
T Consensus 73 ~~~~~~~~~~~~~tv~~~l~~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~~rl~la~al~~ 140 (195)
T PRK13541 73 TYIGHNLGLKLEMTVFENLKFWSEIY------NSAETLYAAIHYFKLHDLLDEKC------YSLSSGMQKIVAIARLIAC 140 (195)
T ss_pred EeccCCcCCCccCCHHHHHHHHHHhc------ccHHHHHHHHHHcCCHhhhccCh------hhCCHHHHHHHHHHHHHhc
Confidence 99999988888899999998754321 12346788899999988777754 4999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEE
Q 006548 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 318 (641)
Q Consensus 265 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v 318 (641)
+|++|+|||||+|||+.++..+.+.|++..++|+|+|+++|++. .+ ..+|-|
T Consensus 141 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i-~~~~~~ 192 (195)
T PRK13541 141 QSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES-SI-KSAQIL 192 (195)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc-cc-chhhee
Confidence 99999999999999999999999999887777899999999874 33 346654
No 310
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=8.9e-37 Score=292.98 Aligned_cols=156 Identities=25% Similarity=0.450 Sum_probs=137.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----- 180 (641)
++++|+++.|+ .+++|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+....
T Consensus 1 l~~~~l~~~~~-----~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~v~~~g~~~~~~~~~~~ 72 (163)
T cd03216 1 LELRGITKRFG-----GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS---GEILVDGKEVSFASPRDA 72 (163)
T ss_pred CEEEEEEEEEC-----CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEECCcCCHHHH
Confidence 46899999984 2469999999999999999999999999999999999999875 9999999764310
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
.+.++|++| ||||||||++||
T Consensus 73 ~~~~i~~~~q----------------------------------------------------------LS~G~~qrl~la 94 (163)
T cd03216 73 RRAGIAMVYQ----------------------------------------------------------LSVGERQMVEIA 94 (163)
T ss_pred HhcCeEEEEe----------------------------------------------------------cCHHHHHHHHHH
Confidence 123444444 999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (641)
|||+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++ .++.+.||++++|++|++++
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL-DEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999987799999988886 46888999999999999875
No 311
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-37 Score=296.49 Aligned_cols=166 Identities=30% Similarity=0.509 Sum_probs=145.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-----~ 180 (641)
++++|+++.+.++ ...+|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|++... .
T Consensus 1 l~~~~l~~~~~~~---~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 74 (171)
T cd03228 1 IEFKNVSFSYPGR---PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTS---GEILIDGVDLRDLDLESL 74 (171)
T ss_pred CEEEEEEEEcCCC---CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---CEEEECCEEhhhcCHHHH
Confidence 3688999988532 1369999999999999999999999999999999999999875 999999987532 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
.+.++|++|++.+++ .|+.||+ |||||||||+|||
T Consensus 75 ~~~i~~~~~~~~~~~-~t~~e~l--------------------------------------------LS~G~~~rl~la~ 109 (171)
T cd03228 75 RKNIAYVPQDPFLFS-GTIRENI--------------------------------------------LSGGQRQRIAIAR 109 (171)
T ss_pred HhhEEEEcCCchhcc-chHHHHh--------------------------------------------hCHHHHHHHHHHH
Confidence 246899999987775 5888776 8999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
+|+.+|++|||||||+|||+.++..+.+.|+++.+ ++|+|+++|++. ++.. ||++++|++|+
T Consensus 110 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 110 ALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 99999999999999999999999999999999964 689999888874 6666 99999999985
No 312
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=8e-37 Score=294.15 Aligned_cols=164 Identities=29% Similarity=0.412 Sum_probs=143.8
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 185 (641)
++++|+++.+++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|. +.++
T Consensus 1 i~~~~~~~~~~~----~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~~~------~~i~ 67 (166)
T cd03223 1 IELENLSLATPD----GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGS---GRIGMPEG------EDLL 67 (166)
T ss_pred CEEEEEEEEcCC----CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCC------ceEE
Confidence 368999998842 2469999999999999999999999999999999999998875 99999873 5699
Q ss_pred EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhC
Q 006548 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (641)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (641)
|++|++.++ ..|++||+.+. .+..||||||||++|||||+.+
T Consensus 68 ~~~q~~~~~-~~tv~~nl~~~-------------------------------------~~~~LS~G~~~rv~laral~~~ 109 (166)
T cd03223 68 FLPQRPYLP-LGTLREQLIYP-------------------------------------WDDVLSGGEQQRLAFARLLLHK 109 (166)
T ss_pred EECCCCccc-cccHHHHhhcc-------------------------------------CCCCCCHHHHHHHHHHHHHHcC
Confidence 999998765 67999998541 1248999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 266 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
|++|+|||||+|||+.++..+.+.|+++ +.|+|+++|++. . ...||++++|++|-
T Consensus 110 p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~-~-~~~~d~i~~l~~~~ 164 (166)
T cd03223 110 PKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS-L-WKFHDRVLDLDGEG 164 (166)
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh-H-HhhCCEEEEEcCCC
Confidence 9999999999999999999999999986 589999999974 3 47999999998653
No 313
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.2e-36 Score=311.05 Aligned_cols=188 Identities=18% Similarity=0.203 Sum_probs=154.6
Q ss_pred eeeceeeEE-----eCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCH
Q 006548 125 VVKSSNGYA-----LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTV 199 (641)
Q Consensus 125 iL~~vs~~i-----~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV 199 (641)
.++|+++.+ ++||+++|+||||||||||+++|+|+++|++ |+|.++|. .++|++|+....+.+||
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~---G~i~~~g~-------~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDE---GDIEIELD-------TVSYKPQYIKADYEGTV 78 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---CeEEECCc-------eEEEecccccCCCCCCH
Confidence 445555555 5799999999999999999999999999875 99999984 58999999887778999
Q ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCC
Q 006548 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279 (641)
Q Consensus 200 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD 279 (641)
+|++.+...... ......+++++.++|.+..++.++ .|||||||||+||++|+.+|+++||||||++||
T Consensus 79 ~e~l~~~~~~~~-----~~~~~~~~~l~~l~l~~~~~~~~~------~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD 147 (246)
T cd03237 79 RDLLSSITKDFY-----THPYFKTEIAKPLQIEQILDREVP------ELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147 (246)
T ss_pred HHHHHHHhhhcc-----ccHHHHHHHHHHcCCHHHhhCChh------hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 999975432111 112346789999999888777554 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEE--EEeChhH
Q 006548 280 SVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTL--FFGETLA 334 (641)
Q Consensus 280 ~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv--~~G~~~~ 334 (641)
+.++..+.+.|++++++ |+|||+++|+. .++..+||++++|+++..+ ..+++.+
T Consensus 148 ~~~~~~l~~~l~~~~~~~~~tiiivsHd~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 148 VEQRLMASKVIRRFAENNEKTAFVVEHDI-IMIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 99999999999999854 89999988886 5788899999999765433 3344444
No 314
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-37 Score=303.94 Aligned_cols=213 Identities=27% Similarity=0.383 Sum_probs=180.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE----- 178 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~----- 178 (641)
..+.++|+++.+. +|+||+|+|++|+|||..+|+|||||||||||++++|.++|++ |.+.+.|+...
T Consensus 30 ~li~l~~v~v~r~-----gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pss---g~~~~~G~~~G~~~~~ 101 (257)
T COG1119 30 PLIELKNVSVRRN-----GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSS---GDVTLLGRRFGKGETI 101 (257)
T ss_pred ceEEecceEEEEC-----CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCC---CceeeeeeeccCCcch
Confidence 4689999999884 5789999999999999999999999999999999999999874 99999998632
Q ss_pred -CCCceEEEEcCC--CccCCCCCHHHHHHHHH--HhcCCC-cc-chHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHH
Q 006548 179 -MPYGSYGFVERE--TTLIGSLTVREYLYYSA--LLQLPG-FF-CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 179 -~~~~~~~yv~Q~--~~l~~~lTV~E~l~~~~--~~~~~~-~~-~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGG 251 (641)
..+++||+|.-+ ..+.+..+|+|.+.-+. ...... .. ....+++..+++.+|+.+.+|+..+ .||-|
T Consensus 102 ~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~------~LS~G 175 (257)
T COG1119 102 FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG------SLSQG 175 (257)
T ss_pred HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh------hcCHh
Confidence 124679999643 44556778888774322 122221 11 2356778999999999999999776 99999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST--GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~--g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (641)
|||||-|||||+.+|++||||||++|||...+..+.+.|.+++.. +.++|+++||. +++-..+++++++++|+++++
T Consensus 176 e~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~~ 254 (257)
T COG1119 176 EQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQ 254 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhcccccceEEEeeCCceeec
Confidence 999999999999999999999999999999999999999999854 78999999998 589999999999999999998
Q ss_pred eC
Q 006548 330 GE 331 (641)
Q Consensus 330 G~ 331 (641)
|.
T Consensus 255 g~ 256 (257)
T COG1119 255 GK 256 (257)
T ss_pred cc
Confidence 74
No 315
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=3.8e-37 Score=348.14 Aligned_cols=187 Identities=28% Similarity=0.397 Sum_probs=159.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++||++.|++ .+++|+|+|+++++||.+||+||||||||||+|+|+|+++|++ |+|.+||.+....
T Consensus 334 ~I~~~~vsf~Y~~----~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~---G~I~i~g~~i~~~~~~l 406 (529)
T TIGR02868 334 TLELRDLSFGYPG----SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQ---GEVTLDGVSVSSLQDEL 406 (529)
T ss_pred eEEEEEEEEecCC----CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEEhhhHHHHH
Confidence 5999999999953 2359999999999999999999999999999999999999975 9999999875421
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCC-----CCCCCHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGERRR 255 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~-----~~~LSGGerqR 255 (641)
++.++||+|++.+|+. |++||+.++. +. ..+++++++++..++.+..++++.|.+. ...||||||||
T Consensus 407 r~~i~~V~Q~~~lF~~-TI~eNI~~g~----~~---~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQR 478 (529)
T TIGR02868 407 RRRISVFAQDAHLFDT-TVRDNLRLGR----PD---ATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQR 478 (529)
T ss_pred HhheEEEccCcccccc-cHHHHHhccC----CC---CCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHH
Confidence 3479999999999964 9999997741 11 2456788999999998876655443332 35699999999
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCC
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307 (641)
Q Consensus 256 v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~ 307 (641)
++|||||+.+|+||+||||||+||+.++..+.+.|+++. +++|+|+++|++
T Consensus 479 iaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 479 LALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 999999999999999999999999999999999999864 478999999974
No 316
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-37 Score=288.92 Aligned_cols=192 Identities=21% Similarity=0.354 Sum_probs=167.8
Q ss_pred cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----CceEEEEcCCCccCC
Q 006548 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YGSYGFVERETTLIG 195 (641)
Q Consensus 121 ~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~~~~yv~Q~~~l~~ 195 (641)
...++|+++|+.+.+||.++|.||||||||||+|+++.+.+|++ |++++.|++.... +++++||.|.+.||+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~---G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTS---GTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCC---ceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 45689999999999999999999999999999999999999986 9999999986432 357999999999998
Q ss_pred CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCC
Q 006548 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (641)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEP 274 (641)
. ||++|+.|+-.++.... ......+.|+.+++.+ ..++.+ .+||||||||++|+|.|..-|+||+||||
T Consensus 91 ~-tVeDNlifP~~~r~rr~---dr~aa~~llar~~l~~~~L~k~i------t~lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 91 D-TVEDNLIFPWQIRNRRP---DRAAALDLLARFALPDSILTKNI------TELSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred c-chhhccccchHHhccCC---ChHHHHHHHHHcCCchhhhcchh------hhccchHHHHHHHHHHhhcCCceEEecCc
Confidence 6 99999999877664321 3455778899999965 455544 49999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 275 LYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 275 tsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
||+||+.+++.|-++|.++. +++..++.++|++ ++..+.+|+++-+..|++
T Consensus 161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh-HHHhhhhheEEEeccCcc
Confidence 99999999999999999987 6789999988888 477889999999999875
No 317
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=6.1e-37 Score=326.01 Aligned_cols=221 Identities=24% Similarity=0.318 Sum_probs=183.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 180 (641)
..+.++++++.=+ ...+.+|+|+||.+.+||.+||+||||||||||.|+|.|..+|.+ |.|.+||.+.+..
T Consensus 333 g~L~Ve~l~~~PP---g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~---G~VRLDga~l~qWd~e 406 (580)
T COG4618 333 GALSVERLTAAPP---GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTS---GSVRLDGADLRQWDRE 406 (580)
T ss_pred ceeeEeeeeecCC---CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCC---CcEEecchhhhcCCHH
Confidence 4689999998432 245789999999999999999999999999999999999999975 9999999875322
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHH
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGer 253 (641)
-+++||.||+-.||+. ||.||+. |...+ ...+.|-++.+..|..+..-+.+.|++ -...||||||
T Consensus 407 ~lG~hiGYLPQdVeLF~G-TIaeNIa-----Rf~~~--~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQR 478 (580)
T COG4618 407 QLGRHIGYLPQDVELFDG-TIAENIA-----RFGEE--ADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQR 478 (580)
T ss_pred HhccccCcCcccceecCC-cHHHHHH-----hcccc--CCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHH
Confidence 2579999999999975 9999994 22111 133345555555555555444443333 3357999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
||+++||||-.+|.+++||||-|+||......+.+.|.+++++|.|+|+++|.|+ +...+|+|++|++|++-.+|+.+
T Consensus 479 QRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~ 556 (580)
T COG4618 479 QRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPRE 556 (580)
T ss_pred HHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHH
Confidence 9999999999999999999999999999999999999999999999999999984 67889999999999999999999
Q ss_pred HHHHHhh
Q 006548 334 ACLQHFS 340 (641)
Q Consensus 334 ~~~~~f~ 340 (641)
|++..+.
T Consensus 557 eVLa~~~ 563 (580)
T COG4618 557 EVLAKVL 563 (580)
T ss_pred HHHHHhc
Confidence 9988654
No 318
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.8e-36 Score=344.30 Aligned_cols=209 Identities=24% Similarity=0.287 Sum_probs=173.9
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..++++||++.|.+ .+.+|+|+|+++++||+++|+|||||||||||++|+|+++|++ |+|.+++. ..
T Consensus 5 ~~l~i~~l~~~y~~----~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~---G~i~~~~~------~~ 71 (556)
T PRK11819 5 YIYTMNRVSKVVPP----KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFE---GEARPAPG------IK 71 (556)
T ss_pred EEEEEeeEEEEeCC----CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCC------CE
Confidence 36899999999941 3579999999999999999999999999999999999998875 99999752 46
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHH-h--------------cCCCcc--------------------chHHHHHHHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSAL-L--------------QLPGFF--------------------CQRKNVVEDAIHA 228 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~-~--------------~~~~~~--------------------~~~~~~v~~~l~~ 228 (641)
+|||+|++.+++.+||.||+.++.. . ..+... .+..++++++++.
T Consensus 72 i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (556)
T PRK11819 72 VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA 151 (556)
T ss_pred EEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence 9999999999999999999987531 0 000000 0113467888999
Q ss_pred cCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 006548 229 MSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (641)
Q Consensus 229 lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (641)
+||.. .++.+ .+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. .|||+++|++
T Consensus 152 ~gl~~-~~~~~------~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~- 220 (556)
T PRK11819 152 LRCPP-WDAKV------TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDR- 220 (556)
T ss_pred CCCCc-ccCch------hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCH-
Confidence 99953 55544 4999999999999999999999999999999999999999999999873 4888888876
Q ss_pred HHHHhcCCEEEEEeCCeEE-EEeChhHHH
Q 006548 309 TEVFGLFDRICLLSNGNTL-FFGETLACL 336 (641)
Q Consensus 309 ~~i~~~~D~v~vL~~G~iv-~~G~~~~~~ 336 (641)
+++.++||+|++|++|+++ +.|+.++..
T Consensus 221 ~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 221 YFLDNVAGWILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred HHHHhhcCeEEEEeCCEEEEecCCHHHHH
Confidence 5888999999999999986 788876543
No 319
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-36 Score=342.64 Aligned_cols=204 Identities=25% Similarity=0.349 Sum_probs=174.0
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|. +.
T Consensus 318 ~~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~---G~i~~~~~------~~ 383 (530)
T PRK15064 318 NALEVENLTKGFD-----NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDS---GTVKWSEN------AN 383 (530)
T ss_pred ceEEEEeeEEeeC-----CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCc------eE
Confidence 3699999999984 3469999999999999999999999999999999999998875 99999873 46
Q ss_pred EEEEcCCCc--cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 184 YGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 184 ~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
++|++|+.. +++.+||+|++.+.. .. ...+++++++++.+|+. +..++.+ ..|||||||||+|||
T Consensus 384 i~~~~q~~~~~~~~~~t~~~~~~~~~---~~---~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgGq~qrv~la~ 451 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQWR---QE---GDDEQAVRGTLGRLLFSQDDIKKSV------KVLSGGEKGRMLFGK 451 (530)
T ss_pred EEEEcccccccCCCCCcHHHHHHHhc---cC---CccHHHHHHHHHHcCCChhHhcCcc------cccCHHHHHHHHHHH
Confidence 999999863 566799999986421 11 12345688999999994 6666654 499999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE-EEeChhHHHH
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLACLQ 337 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~~~ 337 (641)
+|+.+|++|||||||+|||+.++..+.+.|+++ +.|||+++|++ +++.++||++++|++|+++ +.|++++..+
T Consensus 452 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 452 LMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 999999999999999999999999999999887 35899988886 5888999999999999998 8888876543
No 320
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.2e-37 Score=357.05 Aligned_cols=217 Identities=23% Similarity=0.324 Sum_probs=184.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++||+|.|+. ++..+||+|+|+++++|+.+||+|||||||||...+|-..+.|.. |.|.+||.+++..
T Consensus 987 ~I~~~~V~F~YPs--RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~---G~V~IDg~dik~lnl~~ 1061 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPT--RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDA---GKVKIDGVDIKDLNLKW 1061 (1228)
T ss_pred EEEEeeeEeeCCC--CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---CeEEECCcccccCCHHH
Confidence 6999999999985 367889999999999999999999999999999999999999976 9999999886432
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCC-----CCCCCCCHHHHH
Q 006548 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERR 254 (641)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerq 254 (641)
++++|.|.|+|.||. -|++||+.|+. .+ ...+++.++++..+..++...++.|. +...+|||||||
T Consensus 1062 LR~~i~lVsQEP~LF~-~TIrENI~YG~-~~------vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQ 1133 (1228)
T KOG0055|consen 1062 LRKQIGLVSQEPVLFN-GTIRENIAYGS-EE------VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQ 1133 (1228)
T ss_pred HHHhcceeccCchhhc-ccHHHHHhccC-CC------CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHH
Confidence 467999999999995 59999999971 11 13455677777766655544444333 244679999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||++||+||||||.||+||+++.+.|-+.|.+.. +|+|.|++.|..+ ..+.||.|+|+++|+|++.|+-++
T Consensus 1134 RIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE~GtH~~ 1210 (1228)
T KOG0055|consen 1134 RIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLKNGKVVEQGTHDE 1210 (1228)
T ss_pred HHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hhhcCCEEEEEECCEEEecccHHH
Confidence 9999999999999999999999999999999999999976 5788888899985 467899999999999999999888
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+++
T Consensus 1211 L~~ 1213 (1228)
T KOG0055|consen 1211 LLA 1213 (1228)
T ss_pred HHh
Confidence 775
No 321
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.1e-36 Score=344.37 Aligned_cols=200 Identities=26% Similarity=0.403 Sum_probs=169.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.++++||+++|+++ .+++|+|+|++++|||.+||+||||||||||+|+|+|+++|++ |+|.+||.+....
T Consensus 320 ~i~~~~v~f~y~~~---~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~I~~~g~~i~~~~~~~ 393 (529)
T TIGR02857 320 SLEFSGLSVAYPGR---RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTE---GSIAVNGVPLADADADS 393 (529)
T ss_pred eEEEEEEEEECCCC---CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEehhhCCHHH
Confidence 69999999999632 2469999999999999999999999999999999999999975 9999999875321
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
++.++||+|++.+|+ .|++||+.++. +. ..++++.++++..++.+..++.+.|.+ ....|||||||
T Consensus 394 lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~~---~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~q 465 (529)
T TIGR02857 394 WRDQIAWVPQHPFLFA-GTIAENIRLAR----PD---ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQ 465 (529)
T ss_pred HHhheEEEcCCCcccC-cCHHHHHhccC----CC---CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHH
Confidence 357999999999986 59999997641 11 134678899999999887666543322 34679999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (641)
|++|||||+++|++|+||||||+||+.+++.+.+.|+++. +++|+|+++|++. . .+.||+|++|
T Consensus 466 ri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~-~~~~d~i~~l 529 (529)
T TIGR02857 466 RLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA-L-AERADRIVVL 529 (529)
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-H-HHhCCEEEeC
Confidence 9999999999999999999999999999999999999985 5789999999974 3 4679999875
No 322
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-36 Score=341.62 Aligned_cols=213 Identities=19% Similarity=0.237 Sum_probs=174.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 180 (641)
..++++|+++.. +.+|+|+|+.+++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++....
T Consensus 249 ~~i~~~~l~~~~-------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~ 318 (491)
T PRK10982 249 VILEVRNLTSLR-------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSA---GTITLHGKKINNHNAN 318 (491)
T ss_pred cEEEEeCccccc-------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCc---cEEEECCEECCCCCHH
Confidence 368999998752 259999999999999999999999999999999999999875 9999999875321
Q ss_pred ---CceEEEEcCCC---ccCCCCCHHHHHHHHHH---hcC-CC-ccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCC
Q 006548 181 ---YGSYGFVERET---TLIGSLTVREYLYYSAL---LQL-PG-FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGL 248 (641)
Q Consensus 181 ---~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~---~~~-~~-~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~L 248 (641)
.+.++|++|+. .+++.+|+.+|..+... ... .. .....++.++++++.+++. +..++. +.+|
T Consensus 319 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~L 392 (491)
T PRK10982 319 EAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ------IGSL 392 (491)
T ss_pred HHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc------cccC
Confidence 23489999985 46888988877432210 010 10 1112345678899999995 455654 4599
Q ss_pred CHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 006548 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (641)
Q Consensus 249 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (641)
||||||||+|||+|+.+|+||||||||+|||+.++..+++.|++++++|.|||+++|+. +++.++||++++|++|+++.
T Consensus 393 SgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~-~~~~~~~d~v~~l~~g~i~~ 471 (491)
T PRK10982 393 SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM-PELLGITDRILVMSNGLVAG 471 (491)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCCh-HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999988899999988887 57889999999999999998
Q ss_pred EeChh
Q 006548 329 FGETL 333 (641)
Q Consensus 329 ~G~~~ 333 (641)
.++++
T Consensus 472 ~~~~~ 476 (491)
T PRK10982 472 IVDTK 476 (491)
T ss_pred EEccc
Confidence 77653
No 323
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.6e-36 Score=376.80 Aligned_cols=215 Identities=20% Similarity=0.276 Sum_probs=184.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||+++|++ ..+.+|+|+|++++|||.+||+|+||||||||+++|.|+++|++ |+|.+||.++..
T Consensus 1237 ~I~f~nVsf~Y~~---~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~---G~I~IDG~dI~~i~l~~ 1310 (1622)
T PLN03130 1237 SIKFEDVVLRYRP---ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER---GRILIDGCDISKFGLMD 1310 (1622)
T ss_pred cEEEEEEEEEeCC---CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCC---ceEEECCEecccCCHHH
Confidence 6999999999953 23469999999999999999999999999999999999999975 999999998643
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.++++++|||++.+|.. |++|||.+.. ...++.+.++++..++.+..++++.|.+ ....|||||||
T Consensus 1311 LR~~IsiVpQdp~LF~G-TIreNLd~~~--------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQ 1381 (1622)
T PLN03130 1311 LRKVLGIIPQAPVLFSG-TVRFNLDPFN--------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQ 1381 (1622)
T ss_pred HHhccEEECCCCccccc-cHHHHhCcCC--------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHH
Confidence 23679999999999964 9999996421 1245678999999999877766553332 23479999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|+|+++|+.. .+ ..||||++|++|++++.|++++
T Consensus 1382 rlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~-tI-~~~DrIlVLd~G~IvE~Gt~~e 1458 (1622)
T PLN03130 1382 LLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN-TI-IDCDRILVLDAGRVVEFDTPEN 1458 (1622)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999975 4799999999885 34 4599999999999999999999
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+++
T Consensus 1459 Ll~ 1461 (1622)
T PLN03130 1459 LLS 1461 (1622)
T ss_pred HHh
Confidence 874
No 324
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.2e-36 Score=340.91 Aligned_cols=214 Identities=22% Similarity=0.338 Sum_probs=171.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..++++|+++.|+ ++.+|+|+|+.+++||+++|+||||||||||+|+|+|+.++. .+|+|.++|++...
T Consensus 259 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~--~~G~i~~~g~~~~~~~~~ 331 (490)
T PRK10938 259 PRIVLNNGVVSYN-----DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQG--YSNDLTLFGRRRGSGETI 331 (490)
T ss_pred ceEEEeceEEEEC-----CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcc--cCCeEEEecccCCCCCCH
Confidence 4699999999984 346999999999999999999999999999999999987651 14999999975321
Q ss_pred --CCceEEEEcCCCccCCC--CCHHHHHHHHHHh--cCCC-ccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCCCHH
Q 006548 180 --PYGSYGFVERETTLIGS--LTVREYLYYSALL--QLPG-FFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~--lTV~E~l~~~~~~--~~~~-~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGG 251 (641)
.++.++|++|++.++.. .|+++++.++... .... .....+++++++++.++|.+ ..++.+ ..||||
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgG 405 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPF------HSLSWG 405 (490)
T ss_pred HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCch------hhCCHH
Confidence 12469999998765433 5777776543211 1101 11123456889999999986 777654 499999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEEeCChHHHHh-cCCEEEEEeCCeEEEE
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG-CTLLFTINQSSTEVFG-LFDRICLLSNGNTLFF 329 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~t~h~~~~~i~~-~~D~v~vL~~G~iv~~ 329 (641)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++| .|||+++|+. +++.+ +||++++|++|++++.
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~-~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA-EDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch-hhhhhhhheeEEEecCCceEEe
Confidence 9999999999999999999999999999999999999999998775 4689888887 46766 5999999999999876
Q ss_pred eC
Q 006548 330 GE 331 (641)
Q Consensus 330 G~ 331 (641)
-.
T Consensus 485 ~~ 486 (490)
T PRK10938 485 VQ 486 (490)
T ss_pred ec
Confidence 43
No 325
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.5e-36 Score=376.60 Aligned_cols=215 Identities=19% Similarity=0.260 Sum_probs=183.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||+++|+. ..+.+|+|+|++++|||.+||+|+||||||||+++|.|+++|++ |+|.+||.++..
T Consensus 1234 ~I~f~nVsf~Y~~---~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~---G~I~IdG~di~~i~~~~ 1307 (1495)
T PLN03232 1234 SIKFEDVHLRYRP---GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEK---GRIMIDDCDVAKFGLTD 1307 (1495)
T ss_pred cEEEEEEEEEECC---CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---ceEEECCEEhhhCCHHH
Confidence 5999999999952 23579999999999999999999999999999999999999975 999999998642
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.+++++||||++.+|+ .|++|||.+. . ...++++.++++..++.+..++.+.|.+ ....|||||||
T Consensus 1308 lR~~i~iVpQdp~LF~-gTIr~NL~~~------~--~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1378 (1495)
T PLN03232 1308 LRRVLSIIPQSPVLFS-GTVRFNIDPF------S--EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQ 1378 (1495)
T ss_pred HHhhcEEECCCCeeeC-ccHHHHcCCC------C--CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHH
Confidence 2467999999999996 4999999642 1 1245678899999999887666543322 23579999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|+|+++|+.. .+ ..||+|++|++|++++.|++++
T Consensus 1379 rlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~-ti-~~~DrIlVL~~G~ivE~Gt~~e 1455 (1495)
T PLN03232 1379 LLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN-TI-IDCDKILVLSSGQVLEYDSPQE 1455 (1495)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999874 4799999999984 44 4599999999999999999998
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+++
T Consensus 1456 Ll~ 1458 (1495)
T PLN03232 1456 LLS 1458 (1495)
T ss_pred HHh
Confidence 764
No 326
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=4.9e-36 Score=340.49 Aligned_cols=209 Identities=24% Similarity=0.283 Sum_probs=169.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 184 (641)
.++++||++.|.+ .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.+++. ..+
T Consensus 4 ~i~~~nls~~~~~----~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~---G~i~~~~~------~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP----KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFN---GEARPAPG------IKV 70 (552)
T ss_pred EEEEeeEEEecCC----CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCC------CEE
Confidence 5899999999841 3469999999999999999999999999999999999998875 99999752 469
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHh-c------------CCCccch----------------------HHHHHHHHHHHc
Q 006548 185 GFVERETTLIGSLTVREYLYYSALL-Q------------LPGFFCQ----------------------RKNVVEDAIHAM 229 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~-~------------~~~~~~~----------------------~~~~v~~~l~~l 229 (641)
+|++|++.+++.+||+||+.++... + ......+ ...+++++++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 9999999999999999999875321 0 0000000 013455566666
Q ss_pred CCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChH
Q 006548 230 SLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 309 (641)
Q Consensus 230 gL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~ 309 (641)
|+.. .++ .+..|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||+++|+. .
T Consensus 151 ~l~~-~~~------~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~-~ 219 (552)
T TIGR03719 151 RCPP-WDA------DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDR-Y 219 (552)
T ss_pred CCCc-ccC------chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCH-H
Confidence 6642 344 44599999999999999999999999999999999999999999999876 35888887776 5
Q ss_pred HHHhcCCEEEEEeCCeEE-EEeChhHHHH
Q 006548 310 EVFGLFDRICLLSNGNTL-FFGETLACLQ 337 (641)
Q Consensus 310 ~i~~~~D~v~vL~~G~iv-~~G~~~~~~~ 337 (641)
.+..+||++++|++|+++ +.|+.++..+
T Consensus 220 ~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 220 FLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred HHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 788999999999999976 7788776543
No 327
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=6.2e-36 Score=339.49 Aligned_cols=203 Identities=18% Similarity=0.183 Sum_probs=169.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++|+++.|++ .+++|+|+|+++++||.+||+||||||||||+++|+|+++|++ |+|.+||.+...
T Consensus 322 ~i~~~~v~f~y~~----~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g~~~~~~~~~~ 394 (547)
T PRK10522 322 TLELRNVTFAYQD----NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQS---GEILLDGKPVTAEQPED 394 (547)
T ss_pred eEEEEEEEEEeCC----CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEECCCCCHHH
Confidence 6999999999952 2469999999999999999999999999999999999999875 999999998542
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
.++.++||+|++.+|+ .|++||- + ...++.++++++.+++.+..+..-+ ......||||||||++||
T Consensus 395 ~~~~i~~v~q~~~lf~-~ti~~n~--------~---~~~~~~~~~~~~~~~l~~~~~~~~~-~~~G~~LSgGq~qRl~lA 461 (547)
T PRK10522 395 YRKLFSAVFTDFHLFD-QLLGPEG--------K---PANPALVEKWLERLKMAHKLELEDG-RISNLKLSKGQKKRLALL 461 (547)
T ss_pred HhhheEEEecChhHHH-Hhhcccc--------C---chHHHHHHHHHHHcCCchhhhcccc-CCCCCCCCHHHHHHHHHH
Confidence 1357999999998885 4788761 1 1244567889999999765543111 111358999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (641)
|||+.+|++|+||||||+||+.++..+.+.|.+.. +.++|+|+++|++ +..+.||+|++|++|++++.
T Consensus 462 Ral~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 462 LALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999998765 3589999999997 34678999999999999876
No 328
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=8.4e-36 Score=369.91 Aligned_cols=215 Identities=19% Similarity=0.219 Sum_probs=183.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||+++|++ ..+.+|+|||++|+|||.+||+|+||||||||+++|.|+++|++ |+|.+||.++..
T Consensus 1308 ~I~f~nVsf~Y~~---~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~---G~I~IDG~di~~i~l~~ 1381 (1560)
T PTZ00243 1308 SLVFEGVQMRYRE---GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCG---GEIRVNGREIGAYGLRE 1381 (1560)
T ss_pred eEEEEEEEEEeCC---CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEcccCCHHH
Confidence 5999999999953 22469999999999999999999999999999999999999875 999999998642
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.++.++||||++.+|. .||+|||... .. ..++.+.++++..++.+....+..|.+ ....|||||||
T Consensus 1382 LR~~I~iVpQdp~LF~-gTIreNIdp~------~~--~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQ 1452 (1560)
T PTZ00243 1382 LRRQFSMIPQDPVLFD-GTVRQNVDPF------LE--ASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQ 1452 (1560)
T ss_pred HHhcceEECCCCcccc-ccHHHHhCcc------cC--CCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHH
Confidence 2367999999999996 4999999431 11 245679999999999887655443322 23579999999
Q ss_pred HHHHHHHHHhC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 255 RVRIARELVMR-PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 255 Rv~IA~aL~~~-P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
|++|||||+++ |+|||||||||+||+.+...|.+.|++.. +++|+|+++|+.. ....||+|++|++|++++.|+++
T Consensus 1453 rLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~G~VvE~Gt~~ 1529 (1560)
T PTZ00243 1453 LMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDHGAVAEMGSPR 1529 (1560)
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEECCEEEEECCHH
Confidence 99999999996 89999999999999999999999999864 4789999999874 45679999999999999999999
Q ss_pred HHHH
Q 006548 334 ACLQ 337 (641)
Q Consensus 334 ~~~~ 337 (641)
++++
T Consensus 1530 eLl~ 1533 (1560)
T PTZ00243 1530 ELVM 1533 (1560)
T ss_pred HHHh
Confidence 8864
No 329
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3e-36 Score=286.02 Aligned_cols=217 Identities=22% Similarity=0.327 Sum_probs=187.0
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-EeCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-AKSEM--- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G-~~~~~--- 179 (641)
..+.++||++++. +.++|+|+||.+.+||+-+|+|||||||||+|++|+|..+|+. |+|+++| .++..
T Consensus 4 ~iL~~~~vsVsF~-----GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~---G~v~f~g~~dl~~~~e 75 (249)
T COG4674 4 IILYLDGVSVSFG-----GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQE---GEVLFDGDTDLTKLPE 75 (249)
T ss_pred ceEEEeceEEEEc-----ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCc---ceEEEcCchhhccCCH
Confidence 4689999999994 5679999999999999999999999999999999999999875 9999999 44321
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCC-------ccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCC
Q 006548 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPG-------FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249 (641)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-------~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LS 249 (641)
.+..||--+|.+..|..+||+|||..+.+...+- ...+.+.+++++|...||.+.+++..+ .||
T Consensus 76 ~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~------~LS 149 (249)
T COG4674 76 HRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA------LLS 149 (249)
T ss_pred HHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh------hhc
Confidence 1245888899999999999999999875432211 111245689999999999999998776 899
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 006548 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (641)
Q Consensus 250 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (641)
.||||++.|++-|+++|++|+||||++|+--....+.-++|+.++. +++|+++ .|++..+.+++|+|.+|++|.+...
T Consensus 150 HGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVV-EHDM~Fvr~~A~~VTVlh~G~VL~E 227 (249)
T COG4674 150 HGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVV-EHDMGFVREIADKVTVLHEGSVLAE 227 (249)
T ss_pred cchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEE-eccHHHHHHhhheeEEEeccceeec
Confidence 9999999999999999999999999999999999999999999985 4566664 5566899999999999999999999
Q ss_pred eChhHHH
Q 006548 330 GETLACL 336 (641)
Q Consensus 330 G~~~~~~ 336 (641)
|+.+++.
T Consensus 228 Gsld~v~ 234 (249)
T COG4674 228 GSLDEVQ 234 (249)
T ss_pred ccHHHhh
Confidence 9988764
No 330
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=8.6e-36 Score=370.39 Aligned_cols=215 Identities=20% Similarity=0.251 Sum_probs=183.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||+++|+.. .+.+|+|+|++++|||.+||+|+||||||||+++|.|+++|++ |+|.+||.++..
T Consensus 1284 ~I~f~nVsf~Y~~~---~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~---G~I~IdG~dI~~i~~~~ 1357 (1522)
T TIGR00957 1284 RVEFRNYCLRYRED---LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE---GEIIIDGLNIAKIGLHD 1357 (1522)
T ss_pred cEEEEEEEEEeCCC---CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCC---CeEEECCEEccccCHHH
Confidence 69999999999632 2469999999999999999999999999999999999999875 999999998643
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.++++++|||++.+|.. |++|||... .. ..++.+.++++..++.+..++.++|.+ ....|||||||
T Consensus 1358 LR~~i~iVpQdp~LF~g-TIr~NLdp~------~~--~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1428 (1522)
T TIGR00957 1358 LRFKITIIPQDPVLFSG-SLRMNLDPF------SQ--YSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQ 1428 (1522)
T ss_pred HHhcCeEECCCCcccCc-cHHHHcCcc------cC--CCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHH
Confidence 24579999999999975 999999521 11 245668899999999887766544332 23569999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|+|+++|+.. . ...||||++|++|++++.|++++
T Consensus 1429 rl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~-t-i~~~DrIlVld~G~IvE~G~~~e 1505 (1522)
T TIGR00957 1429 LVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN-T-IMDYTRVIVLDKGEVAEFGAPSN 1505 (1522)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-H-HHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999864 4789999999984 3 45699999999999999999998
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+++
T Consensus 1506 Ll~ 1508 (1522)
T TIGR00957 1506 LLQ 1508 (1522)
T ss_pred HHh
Confidence 865
No 331
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.1e-35 Score=335.54 Aligned_cols=204 Identities=20% Similarity=0.240 Sum_probs=169.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..+.++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.+++. ..
T Consensus 323 ~~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~---G~i~~~~~------~~ 388 (556)
T PRK11819 323 KVIEAENLSKSFG-----DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDS---GTIKIGET------VK 388 (556)
T ss_pred eEEEEEeEEEEEC-----CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCc------eE
Confidence 4699999999984 3469999999999999999999999999999999999999875 99999542 25
Q ss_pred EEEEcCCC-ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 184 YGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 184 ~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+||++|+. .+++.+||.||+.+....... .......+++++.+++.+ ..++.+ .+|||||||||+|||+
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgG~~qrv~la~a 459 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIKV---GNREIPSRAYVGRFNFKGGDQQKKV------GVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhcccccc---cccHHHHHHHHHhCCCChhHhcCch------hhCCHHHHHHHHHHHH
Confidence 99999996 788899999999876422111 112234567899999964 556654 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC-CeEE-EEeChhH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTL-FFGETLA 334 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~-G~iv-~~G~~~~ 334 (641)
|+.+|++|||||||+|||+.++..+.+.|+++. | |||+++|++ .++.++||++++|++ |++. +.|+.++
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~~~~ 530 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDR-WFLDRIATHILAFEGDSQVEWFEGNFQE 530 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCH-HHHHHhCCEEEEEECCCeEEEecCCHHH
Confidence 999999999999999999999999999999873 4 788877776 588899999999985 7876 4565543
No 332
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2e-35 Score=335.83 Aligned_cols=198 Identities=24% Similarity=0.273 Sum_probs=171.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..++++|+++.|.+ ..|+++|+.+++||+++|+||||||||||+|+|+|+++|++ |+|.++ ..
T Consensus 339 ~~l~~~~ls~~~~~------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~---G~I~~~--------~~ 401 (590)
T PRK13409 339 TLVEYPDLTKKLGD------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDE---GEVDPE--------LK 401 (590)
T ss_pred eEEEEcceEEEECC------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEEe--------ee
Confidence 46899999998842 35999999999999999999999999999999999999875 999986 25
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~ 263 (641)
++|++|+..+.+.+||+|++.+.... . .....++++++.++|.+..++.+ ..|||||||||+|||+|+
T Consensus 402 i~y~~Q~~~~~~~~tv~e~l~~~~~~-~-----~~~~~~~~~L~~l~l~~~~~~~~------~~LSGGe~QRvaiAraL~ 469 (590)
T PRK13409 402 ISYKPQYIKPDYDGTVEDLLRSITDD-L-----GSSYYKSEIIKPLQLERLLDKNV------KDLSGGELQRVAIAACLS 469 (590)
T ss_pred EEEecccccCCCCCcHHHHHHHHhhh-c-----ChHHHHHHHHHHCCCHHHHhCCc------ccCCHHHHHHHHHHHHHh
Confidence 89999998888899999999875211 1 11235788999999998887755 499999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 264 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
.+|++|||||||+|||+.++..+.+.|++++++ |.|+|+++|+. .++..+|||+++|+ |++...|..
T Consensus 470 ~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~-~~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 470 RDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI-YMIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEc-Ccceeeeec
Confidence 999999999999999999999999999999864 89999988886 57889999999996 588777763
No 333
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.7e-35 Score=334.46 Aligned_cols=203 Identities=21% Similarity=0.251 Sum_probs=168.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..++++|+++.|. ++.+|+|+|+.+++||+++|+||||||||||+++|+|+.+|++ |+|.+++. ..
T Consensus 321 ~~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---G~i~~~~~------~~ 386 (552)
T TIGR03719 321 KVIEAENLSKGFG-----DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDS---GTIKIGET------VK 386 (552)
T ss_pred eEEEEeeEEEEEC-----CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---eEEEECCc------eE
Confidence 3689999999984 3469999999999999999999999999999999999998875 99999542 25
Q ss_pred EEEEcCCC-ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 184 YGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 184 ~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
++|++|+. .+++.+||.||+.++...... .....+++++++.+|+.+ ..++.+ ..|||||||||+|||+
T Consensus 387 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgGe~qrv~la~a 457 (552)
T TIGR03719 387 LAYVDQSRDALDPNKTVWEEISGGLDIIQL---GKREVPSRAYVGRFNFKGSDQQKKV------GQLSGGERNRVHLAKT 457 (552)
T ss_pred EEEEeCCccccCCCCcHHHHHHhhcccccc---CcchHHHHHHHHhCCCChhHhcCch------hhCCHHHHHHHHHHHH
Confidence 99999986 478889999999876422111 112234567899999964 556654 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC-CeEE-EEeChh
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTL-FFGETL 333 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~-G~iv-~~G~~~ 333 (641)
|+.+|++|||||||+|||+.++..+.+.|+++. + |||+++|++ ..+.++||++++|++ |+++ +.|+.+
T Consensus 458 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~~ 527 (552)
T TIGR03719 458 LKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDR-WFLDRIATHILAFEGDSHVEWFEGNYS 527 (552)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCHH
Confidence 999999999999999999999999999999983 3 788877776 578899999999986 5776 445543
No 334
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.1e-35 Score=366.43 Aligned_cols=212 Identities=20% Similarity=0.313 Sum_probs=174.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEeCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN-GAKSEM---- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~-G~~~~~---- 179 (641)
.++++||++.|+.+ ..+++|+|+|+++++||++||+||||||||||+++|+|+++|++ |+|+++ |.+...
T Consensus 382 ~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~i~~g~~i~~~~~~ 456 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR--KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTE---GDIIINDSHNLKDINLK 456 (1466)
T ss_pred cEEEEEEEEEcCCC--CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCC---CeEEEeCCcchhhCCHH
Confidence 59999999999632 23469999999999999999999999999999999999999975 999995 565421
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcC----------C------------------------------------
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQL----------P------------------------------------ 212 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~----------~------------------------------------ 212 (641)
.++.++||+|++.+|+ .||+||+.++..... +
T Consensus 457 ~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 535 (1466)
T PTZ00265 457 WWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELI 535 (1466)
T ss_pred HHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhh
Confidence 1356999999999997 599999988631000 0
Q ss_pred ----CccchHHHHHHHHHHHcCCchHHhhhhcCC-----CCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHH
Q 006548 213 ----GFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (641)
Q Consensus 213 ----~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~ 283 (641)
......++.+.++++.+++.+..++++.|. .....||||||||++|||||+.+|+|||||||||+||+.++
T Consensus 536 ~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se 615 (1466)
T PTZ00265 536 EMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSE 615 (1466)
T ss_pred hcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 000113456888999999988766554332 34678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 006548 284 LLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (641)
Q Consensus 284 ~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (641)
..+.+.|+++++ +|+|+|+++|++. .+ +.||+|++|++|
T Consensus 616 ~~i~~~L~~~~~~~g~TvIiIsHrls-~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 616 YLVQKTINNLKGNENRITIIIAHRLS-TI-RYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCHH-HH-HhCCEEEEEeCC
Confidence 999999999975 5899999999875 44 789999999986
No 335
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.8e-35 Score=303.76 Aligned_cols=198 Identities=21% Similarity=0.218 Sum_probs=162.4
Q ss_pred eEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCC
Q 006548 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSE 178 (641)
Q Consensus 110 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~-----------~~G~~~~ 178 (641)
+|+++|+. .+.+|+|+| .+++||+++|+||||||||||||+|+|+++|+. |+|. ++|.+..
T Consensus 5 ~~~~~y~~----~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~---G~I~~~~~~~~~~~~~~g~~~~ 76 (255)
T cd03236 5 EPVHRYGP----NSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNL---GKFDDPPDWDEILDEFRGSELQ 76 (255)
T ss_pred CcceeecC----cchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEeeccccchhhhhccCchhh
Confidence 56777732 235999999 599999999999999999999999999999875 9996 7776542
Q ss_pred C-----C--CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHH
Q 006548 179 M-----P--YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 179 ~-----~--~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGG 251 (641)
. . ...++|++|+..+++. ++.+++.+.. . . ....+.+.++++.+|+.+..++.+ ..||||
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l--~--~--~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G 143 (255)
T cd03236 77 NYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL--K--K--KDERGKLDELVDQLELRHVLDRNI------DQLSGG 143 (255)
T ss_pred hhhHHhhhcccceeeecchhccCch-HHHHHHHHHh--c--h--hHHHHHHHHHHHHcCCchhhcCCh------hhCCHH
Confidence 1 1 1237899998888774 8888886632 1 1 123456889999999988777654 499999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++++|||+++|++ ..+.++||+|++|+ |+++++|
T Consensus 144 ~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~-~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 144 ELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL-AVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEC-CCCCcce
Confidence 99999999999999999999999999999999999999999987789999988886 57888999999994 6666544
No 336
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1e-35 Score=295.66 Aligned_cols=207 Identities=26% Similarity=0.335 Sum_probs=173.7
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC----ceEEEEc-CCCccCCC
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY----GSYGFVE-RETTLIGS 196 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~----~~~~yv~-Q~~~l~~~ 196 (641)
...+++|+||.+.+|++++++|||||||||+||+|+|++.|++ |.|.++|......+ +++++|+ |..++...
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~---G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wd 112 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTS---GKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWD 112 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCC---CeEEecCcCcchhHHHHHHHHHHHhhhhheeeee
Confidence 3469999999999999999999999999999999999999976 99999998643321 3466664 55666666
Q ss_pred CCHHHHHHHHHHhc-CCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCC
Q 006548 197 LTVREYLYYSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPL 275 (641)
Q Consensus 197 lTV~E~l~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPt 275 (641)
+.+.|.+.....+. .|. .+-+++.+...+.++|++..+.. +|.||-|||.|+.||.+|+++|+||||||||
T Consensus 113 lp~~ds~~v~~~Iy~Ipd--~~F~~r~~~l~eiLdl~~~lk~~------vr~LSlGqRmraeLaaaLLh~p~VLfLDEpT 184 (325)
T COG4586 113 LPALDSLEVLKLIYEIPD--DEFAERLDFLTEILDLEGFLKWP------VRKLSLGQRMRAELAAALLHPPKVLFLDEPT 184 (325)
T ss_pred chhhhhHHHHHHHHhCCH--HHHHHHHHHHHHHhcchhhhhhh------hhhccchHHHHHHHHHHhcCCCcEEEecCCc
Confidence 77777775443322 222 13456788899999999888764 4699999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHhh
Q 006548 276 YHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFS 340 (641)
Q Consensus 276 sgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~ 340 (641)
=|||..++..+.+.|++.. +++.||+.++|.. +.+.++||||++|+.|+++|+|+.+++.+.|.
T Consensus 185 vgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 185 VGLDVNAQANIREFLKEYNEERQATVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred cCcchhHHHHHHHHHHHHHHhhCceEEEEecch-hhHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 9999999999999999998 4589999988876 58999999999999999999999998876553
No 337
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=6.8e-35 Score=361.46 Aligned_cols=214 Identities=19% Similarity=0.244 Sum_probs=181.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~----- 179 (641)
.++++||+++|+. ..+.+|+|+|++|+|||.+||+|+||||||||+++|+|+++ . +|+|.+||.++..
T Consensus 1217 ~I~f~nVs~~Y~~---~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~---~G~I~IdG~di~~i~~~~ 1289 (1490)
T TIGR01271 1217 QMDVQGLTAKYTE---AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T---EGEIQIDGVSWNSVTLQT 1289 (1490)
T ss_pred eEEEEEEEEEeCC---CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEcccCCHHH
Confidence 6999999999963 23579999999999999999999999999999999999986 3 4999999998642
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (641)
.+++++||||++.+|+. ||+|||... . ...++.+.++++.++|.+...++++|.+ ....|||||||
T Consensus 1290 lR~~is~IpQdp~LF~G-TIR~NLdp~------~--~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQ 1360 (1490)
T TIGR01271 1290 WRKAFGVIPQKVFIFSG-TFRKNLDPY------E--QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQ 1360 (1490)
T ss_pred HHhceEEEeCCCccCcc-CHHHHhCcc------c--CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHH
Confidence 23579999999999974 999999431 1 1245678999999999877665543322 23469999999
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
|++|||||+++|+|||||||||+||..+...|.+.|++.. +++|||+++|++. . ...||+|++|++|++++.|++++
T Consensus 1361 rL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~-t-i~~~DrIlvL~~G~ivE~g~p~~ 1437 (1490)
T TIGR01271 1361 LMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE-A-LLECQQFLVIEGSSVKQYDSIQK 1437 (1490)
T ss_pred HHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-H-HHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999865 4799999999874 3 45699999999999999999998
Q ss_pred HHH
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+++
T Consensus 1438 Ll~ 1440 (1490)
T TIGR01271 1438 LLN 1440 (1490)
T ss_pred HHc
Confidence 864
No 338
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-34 Score=333.05 Aligned_cols=203 Identities=21% Similarity=0.306 Sum_probs=170.8
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..+.++||++.|. .+.+|+|+|+.+.+|++++|+||||||||||||+|+|+.+|++ |+|.+++. ..
T Consensus 311 ~~l~~~~l~~~y~-----~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~---G~i~~~~~------~~ 376 (638)
T PRK10636 311 PLLKMEKVSAGYG-----DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVS---GEIGLAKG------IK 376 (638)
T ss_pred ceEEEEeeEEEeC-----CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEECCC------EE
Confidence 4689999999984 3569999999999999999999999999999999999999875 99999742 36
Q ss_pred EEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 184 YGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 184 ~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
+||++|+. .+.+..|+.+++.. .. + ......+.++++.+++. +..++.++ .|||||||||+||+
T Consensus 377 igy~~Q~~~~~l~~~~~~~~~~~~---~~-~---~~~~~~~~~~L~~~~l~~~~~~~~~~------~LSgGekqRl~La~ 443 (638)
T PRK10636 377 LGYFAQHQLEFLRADESPLQHLAR---LA-P---QELEQKLRDYLGGFGFQGDKVTEETR------RFSGGEKARLVLAL 443 (638)
T ss_pred EEEecCcchhhCCccchHHHHHHH---hC-c---hhhHHHHHHHHHHcCCChhHhcCchh------hCCHHHHHHHHHHH
Confidence 89999974 35566778777631 11 1 12345688999999996 46676554 99999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE-EEeChhHHHH
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLACLQ 337 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~~~ 337 (641)
+|+.+|++|||||||+|||+.++..+.+.|+++ .| |||+++|+. ..+..+||++++|++|+++ +.|+.++..+
T Consensus 444 ~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 444 IVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 999999999999999999999999999999987 34 888888776 5888999999999999997 8898877643
No 339
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.8e-35 Score=275.50 Aligned_cols=223 Identities=23% Similarity=0.341 Sum_probs=189.6
Q ss_pred eEEEEeEEEEEecc----cccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 006548 105 SVVWKDLTVTIKGK----RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~----~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~- 179 (641)
.++++||++++... ++....+++.|||++++|+.+||+|.||||||||.|+|+|.++|++ |+|++||++...
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTs---G~il~n~~~L~~~ 80 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS---GEILINDHPLHFG 80 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCC---ceEEECCcccccc
Confidence 46888999888643 2234579999999999999999999999999999999999999986 999999987532
Q ss_pred ----CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHH
Q 006548 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (641)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGe 252 (641)
+.+.+-+++||+ .+.|.+.+.+.|..+.++...-....+.+++-+.|+.+||- +.++ -+++.||-||
T Consensus 81 Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan------~~~~~la~~Q 154 (267)
T COG4167 81 DYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHAN------YYPHMLAPGQ 154 (267)
T ss_pred chHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccc------cchhhcCchh
Confidence 235688888886 57889999998888776654333334778899999999984 4444 3667999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
||||++||||+.+|+|+|.||...+||...+.++.++.-+|.++ |.+-|.++.|. ..+.+++|+|+||++|++|+.|.
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechh-hHhhhhcccEEEEecCceeecCC
Confidence 99999999999999999999999999999999999999999855 99999976665 68899999999999999999999
Q ss_pred hhHHHH
Q 006548 332 TLACLQ 337 (641)
Q Consensus 332 ~~~~~~ 337 (641)
+.+++.
T Consensus 234 t~~v~a 239 (267)
T COG4167 234 TADVLA 239 (267)
T ss_pred hhhhhc
Confidence 988764
No 340
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-35 Score=311.57 Aligned_cols=216 Identities=24% Similarity=0.345 Sum_probs=177.2
Q ss_pred CCceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--
Q 006548 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-- 179 (641)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-- 179 (641)
.+..++++|+++.|. .+|++|+||||++.||+.+||+||||+||||++++|......++ |.|.+||+++..
T Consensus 534 ~~G~i~fsnvtF~Y~----p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~s---GsI~iDgqdIrnvt 606 (790)
T KOG0056|consen 534 TQGKIEFSNVTFAYD----PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNS---GSITIDGQDIRNVT 606 (790)
T ss_pred cCCeEEEEEeEEecC----CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccC---ceEEEcCchHHHHH
Confidence 345799999999996 46789999999999999999999999999999999999988764 999999998642
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHH-------cCCchHHhhhhcCCCCCCCCC
Q 006548 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA-------MSLSDYANKLIGGHCYMKGLP 249 (641)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~-------lgL~~~~~~~ig~~~~~~~LS 249 (641)
.++.||.||||..+|. -|+..|+.|+. |. ..++.+.++.+. ++..+-.++.+| ++.-.||
T Consensus 607 ~~SLRs~IGVVPQDtvLFN-dTI~yNIryak----~~---AsneevyaAAkAA~IHdrIl~fPegY~t~VG--ERGLkLS 676 (790)
T KOG0056|consen 607 QSSLRSSIGVVPQDTVLFN-DTILYNIRYAK----PS---ASNEEVYAAAKAAQIHDRILQFPEGYNTRVG--ERGLKLS 676 (790)
T ss_pred HHHHHHhcCcccCcceeec-ceeeeheeecC----CC---CChHHHHHHHHHhhHHHHHhcCchhhhhhhh--hcccccC
Confidence 2357999999999985 49999998752 22 122334444333 445556677776 3445699
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 006548 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (641)
Q Consensus 250 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (641)
|||||||+|||+++.+|.+++|||.||+||..+.+.+...|.++++.. |.|++.|..+. + -.+|.|+++++|+|++.
T Consensus 677 GGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~R-TtIVvAHRLST-i-vnAD~ILvi~~G~IvEr 753 (790)
T KOG0056|consen 677 GGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANR-TTIVVAHRLST-I-VNADLILVISNGRIVER 753 (790)
T ss_pred CcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCC-ceEEEeeeehh-e-ecccEEEEEeCCeEeec
Confidence 999999999999999999999999999999999999999999999754 44555788763 3 45999999999999999
Q ss_pred eChhHHHH
Q 006548 330 GETLACLQ 337 (641)
Q Consensus 330 G~~~~~~~ 337 (641)
|.-+|++.
T Consensus 754 G~HeeLl~ 761 (790)
T KOG0056|consen 754 GRHEELLK 761 (790)
T ss_pred CcHHHHHh
Confidence 99888765
No 341
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.9e-34 Score=330.69 Aligned_cols=204 Identities=22% Similarity=0.277 Sum_probs=169.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..+.++||++.|. .+.+|+|+|+.+.+|++++|+|||||||||||++|+|+++|++ |+|.+ |.+ ..
T Consensus 318 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~---G~i~~-~~~-----~~ 383 (635)
T PRK11147 318 IVFEMENVNYQID-----GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADS---GRIHC-GTK-----LE 383 (635)
T ss_pred ceEEEeeeEEEEC-----CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEE-CCC-----cE
Confidence 4689999999984 3469999999999999999999999999999999999998875 99998 432 25
Q ss_pred EEEEcCCC-ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 184 YGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 184 ~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+||++|+. .+++.+||.||+.+.... .. .......+.++++.+++. +..++.++ .|||||||||+||++
T Consensus 384 i~y~~q~~~~l~~~~tv~e~l~~~~~~-~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~------~LSgGekqRl~la~a 454 (635)
T PRK11147 384 VAYFDQHRAELDPEKTVMDNLAEGKQE-VM--VNGRPRHVLGYLQDFLFHPKRAMTPVK------ALSGGERNRLLLARL 454 (635)
T ss_pred EEEEeCcccccCCCCCHHHHHHhhccc-cc--ccchHHHHHHHHHhcCCCHHHHhChhh------hCCHHHHHHHHHHHH
Confidence 99999975 688999999999764321 10 011234578899999995 56677554 999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe-CCeEEE-EeChhH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS-NGNTLF-FGETLA 334 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~-~G~iv~-~G~~~~ 334 (641)
|+.+|++|||||||+|||+.++..+.+.|+++ +.|||+++|+. ..+..+||++++|+ +|++.. .|+-++
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 99999999999999999999999999999886 45888888876 57889999999998 899865 455443
No 342
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=2.7e-34 Score=270.20 Aligned_cols=144 Identities=28% Similarity=0.392 Sum_probs=130.8
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 185 (641)
++++|+++.+. ...+|+++|+.+++||+++|+||||||||||+++|+|+.+|.+ |+|.++|. ..++
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~~~------~~i~ 66 (144)
T cd03221 1 IELENLSKTYG-----GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDE---GIVTWGST------VKIG 66 (144)
T ss_pred CEEEEEEEEEC-----CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCc---eEEEECCe------EEEE
Confidence 36889999884 2369999999999999999999999999999999999999875 99999984 4688
Q ss_pred EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhC
Q 006548 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (641)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (641)
|++| ||+||+||++|||||+.+
T Consensus 67 ~~~~----------------------------------------------------------lS~G~~~rv~laral~~~ 88 (144)
T cd03221 67 YFEQ----------------------------------------------------------LSGGEKMRLALAKLLLEN 88 (144)
T ss_pred EEcc----------------------------------------------------------CCHHHHHHHHHHHHHhcC
Confidence 8888 899999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 266 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
|++++|||||+|||+.++..+.+.|+++ ++|+++++|++ +++.++||++++|++|+
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999987 46899988876 57888999999999985
No 343
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=5.9e-34 Score=329.49 Aligned_cols=206 Identities=22% Similarity=0.347 Sum_probs=167.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..++++||++.|++ .+.+|+|+|+.+++|++++|+||||||||||||+|+|+++|++ |+|.+++. ..
T Consensus 507 ~~L~~~~ls~~y~~----~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~---G~I~~~~~------~~ 573 (718)
T PLN03073 507 PIISFSDASFGYPG----GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSS---GTVFRSAK------VR 573 (718)
T ss_pred ceEEEEeeEEEeCC----CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---ceEEECCc------ee
Confidence 46899999999842 2469999999999999999999999999999999999999875 99998752 46
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
++|++|+. ...+++.++.........+. ...++++++++.+|+.+ ..++. +..|||||||||+|||+|
T Consensus 574 igyv~Q~~--~~~l~~~~~~~~~~~~~~~~---~~~~~i~~~L~~~gl~~~~~~~~------~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 574 MAVFSQHH--VDGLDLSSNPLLYMMRCFPG---VPEQKLRAHLGSFGVTGNLALQP------MYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred EEEEeccc--cccCCcchhHHHHHHHhcCC---CCHHHHHHHHHHCCCChHHhcCC------ccccCHHHHHHHHHHHHH
Confidence 99999975 24456666643321111111 12456889999999974 56654 459999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE-EEeChhHHHH
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLACLQ 337 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~~~ 337 (641)
+.+|++|||||||+|||+.++..+++.|++. +| |||+++|++ ..+..+||++++|++|+++ +.|+.++..+
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 9999999999999999999999998888765 34 899988876 5788999999999999998 7787765443
No 344
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2.6e-34 Score=331.73 Aligned_cols=199 Identities=18% Similarity=0.249 Sum_probs=163.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 184 (641)
.++++||++.+++ ++.+|+|+|+++++||+++|+||||||||||+++|+|++++++ |+|.+++ ++.+
T Consensus 451 ~i~~~nv~~~~~~----~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~---G~i~~~~------~~~i 517 (659)
T TIGR00954 451 GIKFENIPLVTPN----GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYG---GRLTKPA------KGKL 517 (659)
T ss_pred eEEEEeeEEECCC----CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEeecC------CCcE
Confidence 5899999998742 3469999999999999999999999999999999999998875 9998864 3569
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcC---CCCCCCCCHHHHHHHHHHHH
Q 006548 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG---HCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~---~~~~~~LSGGerqRv~IA~a 261 (641)
+||+|++.+++. |++||+.++............+++++++++.+++.+..++..|- ......||||||||++||||
T Consensus 518 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa 596 (659)
T TIGR00954 518 FYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARL 596 (659)
T ss_pred EEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence 999999988876 99999987532110000011345688999999999887763320 11346899999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
|+.+|++|||||||+|||+.++..+.+.+++ .|+|+|+++|++. . .+.||++++|+
T Consensus 597 l~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~-~-~~~~d~il~l~ 652 (659)
T TIGR00954 597 FYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS-L-WKYHEYLLYMD 652 (659)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH-H-HHhCCEEEEEe
Confidence 9999999999999999999999999998876 3889999999975 3 57899999997
No 345
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-34 Score=278.16 Aligned_cols=215 Identities=20% Similarity=0.279 Sum_probs=175.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----- 180 (641)
+.+.|+.+.+.......+++|+++|+++..|+++-|+|.||||||||+++|+|.+++++ |+|.++|.++...
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~---G~I~Idg~dVtk~~~~~R 78 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS---GQILIDGVDVTKKSVAKR 78 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCC---ceEEECceecccCCHHHH
Confidence 35667777775544556889999999999999999999999999999999999999986 9999999986432
Q ss_pred CceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCcc-----chHHHHHHHHHHHc--CCchHHhhhhcCCCCCCCCCHH
Q 006548 181 YGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFF-----CQRKNVVEDAIHAM--SLSDYANKLIGGHCYMKGLPCG 251 (641)
Q Consensus 181 ~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~-----~~~~~~v~~~l~~l--gL~~~~~~~ig~~~~~~~LSGG 251 (641)
...++-|+|++ ..++.+|++||+..+......... ..+++...+-++.+ ||++..++.+| -||||
T Consensus 79 A~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig------lLSGG 152 (263)
T COG1101 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG------LLSGG 152 (263)
T ss_pred hhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh------hccch
Confidence 12467789986 578999999999887543211100 11333445556655 45777777776 89999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
|||-++++.|-++.|+||+|||=|++|||.++..|++.-.++.++ +.|.++++|+. .++..+.+|.++|++|+||.+-
T Consensus 153 QRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm-~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 153 QRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNM-EDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred HHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccH-HHHHhhCCeEEEEeCCeEEEEc
Confidence 999999999999999999999999999999999999999998754 78999988886 5788999999999999999863
No 346
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5.1e-34 Score=276.76 Aligned_cols=154 Identities=23% Similarity=0.255 Sum_probs=133.6
Q ss_pred EeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEc
Q 006548 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVE 188 (641)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~ 188 (641)
.||++.|. ++.+++++ +.+++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+ ++|++
T Consensus 4 ~~l~~~~~-----~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~-------i~~~~ 67 (177)
T cd03222 4 PDCVKRYG-----VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNG---DNDEWDGIT-------PVYKP 67 (177)
T ss_pred CCeEEEEC-----CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC---cEEEECCEE-------EEEEc
Confidence 57788773 34688884 8999999999999999999999999999999875 999999853 67877
Q ss_pred CCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcE
Q 006548 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHV 268 (641)
Q Consensus 189 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~i 268 (641)
|+.. ||||||||++|||+|+.+|++
T Consensus 68 q~~~-------------------------------------------------------LSgGq~qrv~laral~~~p~l 92 (177)
T cd03222 68 QYID-------------------------------------------------------LSGGELQRVAIAAALLRNATF 92 (177)
T ss_pred ccCC-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 7432 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE--eChhH
Q 006548 269 LFIDEPLYHLDSVSALLMMVTLKKLASTG-CTLLFTINQSSTEVFGLFDRICLLSNGNTLFF--GETLA 334 (641)
Q Consensus 269 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~--G~~~~ 334 (641)
++|||||+|||+.++..+.+.|+++++++ .|+|+++|++ .++.++||++++|+++-.++. |.|..
T Consensus 93 llLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 160 (177)
T cd03222 93 YLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPKG 160 (177)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCcc
Confidence 99999999999999999999999998765 8999988886 578889999999998766654 55543
No 347
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.1e-33 Score=277.32 Aligned_cols=219 Identities=20% Similarity=0.223 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEecc-------------------cccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 006548 105 SVVWKDLTVTIKGK-------------------RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR 165 (641)
Q Consensus 105 ~l~~~~ls~~~~~~-------------------~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~ 165 (641)
.+.++||++.++.. +.....+|+||||++++||.+||+|+||||||||||+|+|.++|++
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~- 81 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS- 81 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCC-
Confidence 46778888777521 1123579999999999999999999999999999999999999986
Q ss_pred ceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCC
Q 006548 166 MYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245 (641)
Q Consensus 166 ~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 245 (641)
|+|.++|+-.....- .-.+.|.+|.+||+.+-+.+. .-...+.+++++++++..+|.++.|.++
T Consensus 82 --G~v~v~G~v~~li~l-------g~Gf~pelTGreNi~l~~~~~-G~~~~ei~~~~~eIieFaELG~fi~~Pv------ 145 (249)
T COG1134 82 --GKVKVTGKVAPLIEL-------GAGFDPELTGRENIYLRGLIL-GLTRKEIDEKVDEIIEFAELGDFIDQPV------ 145 (249)
T ss_pred --ceEEEcceEehhhhc-------ccCCCcccchHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHHHHHhhCch------
Confidence 999999974321111 123567899999998865542 1122346788999999999999999865
Q ss_pred CCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
+.+|-||+-|++.|.|...+|+|||+||-.+-.|+.-+++-.+.++++.++++|+|+++|++ ..+.++||++++|++|+
T Consensus 146 ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~-~~I~~~Cd~~i~l~~G~ 224 (249)
T COG1134 146 KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL-GAIKQYCDRAIWLEHGQ 224 (249)
T ss_pred hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhcCeeEEEeCCE
Confidence 59999999999999999999999999999999999999999999999988889999988887 58999999999999999
Q ss_pred EEEEeChhHHHHHhhh
Q 006548 326 TLFFGETLACLQHFSN 341 (641)
Q Consensus 326 iv~~G~~~~~~~~f~~ 341 (641)
+.+.|.++++.+++++
T Consensus 225 i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 225 IRMEGSPEEVIPAYEE 240 (249)
T ss_pred EEEcCCHHHHHHHHHH
Confidence 9999999999987654
No 348
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=5.1e-34 Score=276.51 Aligned_cols=160 Identities=19% Similarity=0.199 Sum_probs=131.9
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (641)
.+.+|+|+|+++++|++++|+||||||||||||+|.+ . +|+|.++|.........++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~---~G~v~~~~~~~~~~~~~~~~~~q------------ 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----A---SGKARLISFLPKFSRNKLIFIDQ------------ 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----c---CCcEEECCcccccccccEEEEhH------------
Confidence 4578999999999999999999999999999999964 2 39999988643222234677766
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcCCchH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHHhC--CcEEEEeCCCCCC
Q 006548 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMR--PHVLFIDEPLYHL 278 (641)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~--P~iLlLDEPtsgL 278 (641)
.++++.++|.+. .++ .++.||||||||++|||+|+.+ |++|||||||+||
T Consensus 68 ---------------------~~~l~~~~L~~~~~~~------~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~L 120 (176)
T cd03238 68 ---------------------LQFLIDVGLGYLTLGQ------KLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGL 120 (176)
T ss_pred ---------------------HHHHHHcCCCccccCC------CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccC
Confidence 235677787643 444 4569999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 006548 279 DSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (641)
Q Consensus 279 D~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (641)
|+.++..+.+.|++++++|+|||+++|++. ++ +.||++++|++|+....
T Consensus 121 D~~~~~~l~~~l~~~~~~g~tvIivSH~~~-~~-~~~d~i~~l~~g~~~~~ 169 (176)
T cd03238 121 HQQDINQLLEVIKGLIDLGNTVILIEHNLD-VL-SSADWIIDFGPGSGKSG 169 (176)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEECCCCCCCC
Confidence 999999999999999878999999999874 44 67999999976554333
No 349
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-33 Score=324.38 Aligned_cols=205 Identities=20% Similarity=0.325 Sum_probs=163.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 185 (641)
+.++||++.|. .+.+|+|+|+.+.+|+++||+||||||||||||+|+|+++|++ |+|.++|. ..++
T Consensus 2 i~i~nls~~~g-----~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~---G~I~~~~~------~~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRG-----VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADG---GSYTFPGN------WQLA 67 (638)
T ss_pred EEEEEEEEEeC-----CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCC------CEEE
Confidence 68999999994 4579999999999999999999999999999999999998875 99999874 2478
Q ss_pred EEcCCCccCCCCCHHHHHHHHH-----------------------Hhc--CCC-ccchHHHHHHHHHHHcCCc-hHHhhh
Q 006548 186 FVERETTLIGSLTVREYLYYSA-----------------------LLQ--LPG-FFCQRKNVVEDAIHAMSLS-DYANKL 238 (641)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~-----------------------~~~--~~~-~~~~~~~~v~~~l~~lgL~-~~~~~~ 238 (641)
|++|+...+ ..|+.+++.-.. .+. ... .....+.+++++++.+|+. +..++.
T Consensus 68 ~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 68 WVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred EEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 888864333 246555442110 000 000 0011345788999999996 567776
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEE
Q 006548 239 IGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 318 (641)
Q Consensus 239 ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v 318 (641)
++ .|||||||||+||++|+.+|+||||||||+|||+.+...+.+.|+++ +.|||+++|+. ..+.++||++
T Consensus 147 ~~------~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~-~~l~~~~d~i 216 (638)
T PRK10636 147 VS------DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDR-DFLDPIVDKI 216 (638)
T ss_pred hh------hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHHhcCEE
Confidence 54 99999999999999999999999999999999999999999998875 46888887776 5788999999
Q ss_pred EEEeCCeEE-EEeChhHH
Q 006548 319 CLLSNGNTL-FFGETLAC 335 (641)
Q Consensus 319 ~vL~~G~iv-~~G~~~~~ 335 (641)
++|++|+++ |.|+.+..
T Consensus 217 ~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 217 IHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred EEEeCCEEEEecCCHHHH
Confidence 999999996 56765543
No 350
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.9e-34 Score=353.59 Aligned_cols=209 Identities=24% Similarity=0.304 Sum_probs=174.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 184 (641)
.++++|+++.++.+ ..+.+|+|+|+++++||.++|+||||||||||+++|+|.++|.+ |.+.. .++.+
T Consensus 614 ~I~~~~vsF~y~~~--~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~---G~i~~-------~~~~I 681 (1495)
T PLN03232 614 AISIKNGYFSWDSK--TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAE---TSSVV-------IRGSV 681 (1495)
T ss_pred cEEEEeeEEEcCCC--CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccC---CCEEE-------ecCcE
Confidence 58999999999632 23579999999999999999999999999999999999999864 65531 23569
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCC-----CCCCCHHHHHHHHHH
Q 006548 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGERRRVRIA 259 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~-----~~~LSGGerqRv~IA 259 (641)
+||+|++.++. .||+|||.|+. + ..+++.+++++..+|.+..+.+++|+.. ...||||||||++||
T Consensus 682 ayv~Q~p~Lf~-gTIreNI~fg~----~----~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 752 (1495)
T PLN03232 682 AYVPQVSWIFN-ATVRENILFGS----D----FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMA 752 (1495)
T ss_pred EEEcCcccccc-ccHHHHhhcCC----c----cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHH
Confidence 99999999985 59999998852 1 1356688899999998766666555433 356999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~-L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||+..+|+|+|||||||+||+.+++++++. ++.+ .+++|+|+++|++. ....||+|++|++|++++.|+.+++.+
T Consensus 753 RAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 753 RAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 999999999999999999999999988765 5543 36789999999974 467799999999999999999888763
No 351
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1e-33 Score=351.99 Aligned_cols=208 Identities=24% Similarity=0.330 Sum_probs=176.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCce-eEEEECCEeCCCCCce
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY-GEVFVNGAKSEMPYGS 183 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~-G~I~~~G~~~~~~~~~ 183 (641)
.++++|+++.++.. ..+.+|+|+|+++++||.++|+||||||||||+++|+|.+++. + |+|.+. +.
T Consensus 614 ~I~~~nvsf~y~~~--~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~GG~I~l~--------~~ 680 (1622)
T PLN03130 614 AISIKNGYFSWDSK--AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPR---SDASVVIR--------GT 680 (1622)
T ss_pred ceEEEeeEEEccCC--CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccC---CCceEEEc--------Ce
Confidence 58999999999632 2356999999999999999999999999999999999999875 5 799864 35
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCC-----CCCCCHHHHHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGERRRVRI 258 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~-----~~~LSGGerqRv~I 258 (641)
++||+|++.++. .||+|||.|+. + ..+++.+++++..+|.+..+.++.|+.. ...||||||||++|
T Consensus 681 Iayv~Q~p~Lfn-gTIreNI~fg~----~----~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaL 751 (1622)
T PLN03130 681 VAYVPQVSWIFN-ATVRDNILFGS----P----FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSM 751 (1622)
T ss_pred EEEEcCccccCC-CCHHHHHhCCC----c----ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHH
Confidence 999999999985 69999998752 1 1356788999999998777666554432 35699999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
||||..+|+|+|||||||+||+.+++++++ .++.+. +|+|+|+++|++. ....||+|++|++|++++.|+.+++.+
T Consensus 752 ARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 752 ARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred HHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 999999999999999999999999998865 566553 5799999999983 467799999999999999999988753
No 352
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=4.7e-33 Score=320.66 Aligned_cols=205 Identities=20% Similarity=0.272 Sum_probs=161.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 184 (641)
.+.++||++.|. .+.+|+|+||.+.+|++++|+||||||||||||+|+|+.+|++ |+|.++|. ..+
T Consensus 3 ~l~i~~ls~~~~-----~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~---G~I~~~~~------~~~ 68 (635)
T PRK11147 3 LISIHGAWLSFS-----DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDD---GRIIYEQD------LIV 68 (635)
T ss_pred EEEEeeEEEEeC-----CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---eEEEeCCC------CEE
Confidence 589999999994 3579999999999999999999999999999999999998875 99999863 135
Q ss_pred EEEcCCCccCCCCCHHHHHHHH------------------------------HHhc--CCC-ccchHHHHHHHHHHHcCC
Q 006548 185 GFVERETTLIGSLTVREYLYYS------------------------------ALLQ--LPG-FFCQRKNVVEDAIHAMSL 231 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~------------------------------~~~~--~~~-~~~~~~~~v~~~l~~lgL 231 (641)
+|++|.+......+|.+++..+ ..+. ... .....+.+++++++.+|+
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 148 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGL 148 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCC
Confidence 7777754333334555543211 0000 000 000134568889999998
Q ss_pred chHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHH
Q 006548 232 SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEV 311 (641)
Q Consensus 232 ~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i 311 (641)
.. ++. +..|||||||||+||++|+.+|+||||||||+|||+.++..+.+.|+++. .|||+++|+. ..+
T Consensus 149 ~~--~~~------~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~-~~l 216 (635)
T PRK11147 149 DP--DAA------LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDR-SFI 216 (635)
T ss_pred CC--CCc------hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCH-HHH
Confidence 62 444 45999999999999999999999999999999999999999999999873 4888877776 578
Q ss_pred HhcCCEEEEEeCCeEE-EEeChhHH
Q 006548 312 FGLFDRICLLSNGNTL-FFGETLAC 335 (641)
Q Consensus 312 ~~~~D~v~vL~~G~iv-~~G~~~~~ 335 (641)
.++||+|++|++|+++ +.|+.++.
T Consensus 217 ~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 217 RNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred HHhcCeEEEEECCEEEEecCCHHHH
Confidence 8999999999999997 45776554
No 353
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=8.1e-34 Score=336.27 Aligned_cols=223 Identities=22% Similarity=0.338 Sum_probs=198.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..+..+|+++.|..+. .+++++|+.+++||+.+++|+|||||||++|+|.|..+|++ |+++++|.+...
T Consensus 563 ~~~~~~~L~k~y~~~~----~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~---G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKD----GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTS---GEALIKGHDITVSTDF 635 (885)
T ss_pred ceEEEcceeeeecchh----hhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCc---ceEEEecCccccccch
Confidence 4689999999885321 29999999999999999999999999999999999999976 999999987532
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
.++.+||+||+|.+.+.+|.+|++.+.++++.-. ..+.++.++..++.++|.+.+++.++ .+|||+|||++
T Consensus 636 ~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~-~~di~~~v~~ll~~~~L~~~~~~~~~------~ySgG~kRkLs 708 (885)
T KOG0059|consen 636 QQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLP-RSDIGSAIEKLLRLVGLGPYANKQVR------TYSGGNKRRLS 708 (885)
T ss_pred hhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCC-hhHHHHHHHHHHHHcCChhhhccchh------hCCCcchhhHH
Confidence 3467999999999999999999999998887321 12355669999999999999999765 99999999999
Q ss_pred HHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
+|.||+.+|++++|||||+|+||.+++.+++++++++++|+.+|+|+|. ++|...+|||+.+|.+|++...|+++++..
T Consensus 709 ~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHs-MeE~EaLCtR~aImv~G~l~ciGs~q~LKs 787 (885)
T KOG0059|consen 709 FAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHS-MEEAEALCTRTAIMVIGQLRCIGSPQELKS 787 (885)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHHhhhhheeecCeeEEecChHHHHh
Confidence 9999999999999999999999999999999999999988888887666 579999999999999999999999999987
Q ss_pred Hhhh
Q 006548 338 HFSN 341 (641)
Q Consensus 338 ~f~~ 341 (641)
.|..
T Consensus 788 rfG~ 791 (885)
T KOG0059|consen 788 RYGS 791 (885)
T ss_pred hcCC
Confidence 7654
No 354
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=4.3e-33 Score=346.33 Aligned_cols=208 Identities=20% Similarity=0.264 Sum_probs=173.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 184 (641)
.++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|.++|.+ |+|.++| .+
T Consensus 636 ~i~~~~~~~~~~~---~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~---G~i~~~g--------~i 701 (1522)
T TIGR00957 636 SITVHNATFTWAR---DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE---GHVHMKG--------SV 701 (1522)
T ss_pred cEEEEEeEEEcCC---CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCC---cEEEECC--------EE
Confidence 6899999999853 13469999999999999999999999999999999999999875 9999987 48
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCC-----CCCCCCCHHHHHHHHHH
Q 006548 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERRRVRIA 259 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerqRv~IA 259 (641)
+||+|++.++ +.||+||+.|+.. . .+++.+++++..++.+..+....|+ ....+||||||||++||
T Consensus 702 ~yv~Q~~~l~-~~Ti~eNI~~g~~------~--~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLA 772 (1522)
T TIGR00957 702 AYVPQQAWIQ-NDSLRENILFGKA------L--NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLA 772 (1522)
T ss_pred EEEcCCcccc-CCcHHHHhhcCCc------c--CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHH
Confidence 9999999886 5799999987521 1 1234566677777665544433222 35678999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH--HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA--STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~--~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|||..+|++++||||||+||+.++..+.+.+.+.. .+++|+|+++|++. .+ ..||+|++|++|+++..|+.+++.+
T Consensus 773 RAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~-~l-~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 773 RAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS-YL-PQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh-hh-hhCCEEEEecCCeEEeeCCHHHHHh
Confidence 99999999999999999999999999999997642 35789999999984 44 5599999999999999999988753
No 355
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=257.66 Aligned_cols=191 Identities=23% Similarity=0.335 Sum_probs=162.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---~~ 181 (641)
.++++||+... ++..+|.|+|++|.+||++-||||||||||||+..+.|.+.+.-..+|++++|++..+. ..
T Consensus 2 ~l~l~nvsl~l-----~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~q 76 (213)
T COG4136 2 MLCLKNVSLRL-----PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76 (213)
T ss_pred ceeeeeeeecC-----CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhh
Confidence 47889999765 35579999999999999999999999999999999999998765678999999987543 35
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+++|..+||+.+||+++|.+||.|+.--...+. .++..++.+|++.||.+..++-+ ..||||||-||++-|+
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~--aRr~~a~aAL~~~gL~g~f~~dP------~tlSGGQrARvaL~R~ 148 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGN--ARRNAANAALERSGLDGAFHQDP------ATLSGGQRARVALLRA 148 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccH--HHHhhHHHHHHHhccchhhhcCh------hhcCcchHHHHHHHHH
Confidence 789999999999999999999988642222221 35667889999999999998754 4999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH-HHcCCEEEEEEeCCh
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSS 308 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l-~~~g~tvi~t~h~~~ 308 (641)
|+..|+.++||||+|.||..-+.++.+.+-.- +..|..+|.++|+..
T Consensus 149 Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 149 LLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 99999999999999999999999999976654 456888888888764
No 356
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-33 Score=263.66 Aligned_cols=219 Identities=22% Similarity=0.298 Sum_probs=170.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe---CC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK---SE--- 178 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~---~~--- 178 (641)
.+.++++++.|. ..+-.+||||.+.|||+++|+|+|||||||||+||+++++|+. |+|.+.-.. .+
T Consensus 6 LL~V~~lsk~Yg-----~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~---G~v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 6 LLSVSGLSKLYG-----PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDA---GTVTYRMRDGQPRDLYT 77 (258)
T ss_pred ceeehhhhhhhC-----CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCC---CeEEEEcCCCCchhHhh
Confidence 578999998884 3457899999999999999999999999999999999999986 999986432 11
Q ss_pred ---C-----CCceEEEEcCCCc--cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCC
Q 006548 179 ---M-----PYGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248 (641)
Q Consensus 179 ---~-----~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~L 248 (641)
. .+...|||.|++. +-...+...|+-.-....-.....+.++...++|++++++.. +. ++.|+.+
T Consensus 78 msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~--Ri---DD~PrtF 152 (258)
T COG4107 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLD--RI---DDLPRTF 152 (258)
T ss_pred hchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcc--cc---cCccccc
Confidence 0 1124799999863 322223223331100000001112356677889999988632 21 4578899
Q ss_pred CHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 006548 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (641)
Q Consensus 249 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (641)
|||++||+.|||-|++.|+++|+||||.|||..-+..++++++.|..+ |.++++++|+. ..+.-++||.++|++|+++
T Consensus 153 SGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl-~VarLla~rlmvmk~g~vv 231 (258)
T COG4107 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLADRLMVMKQGQVV 231 (258)
T ss_pred chHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh-HHHHHhhhcceeecCCCEe
Confidence 999999999999999999999999999999999999999999999855 99999988876 4677789999999999999
Q ss_pred EEeChhHHHH
Q 006548 328 FFGETLACLQ 337 (641)
Q Consensus 328 ~~G~~~~~~~ 337 (641)
+.|-++.+++
T Consensus 232 e~GLTDrvLD 241 (258)
T COG4107 232 ESGLTDRVLD 241 (258)
T ss_pred cccccccccc
Confidence 9998887754
No 357
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-33 Score=293.02 Aligned_cols=217 Identities=24% Similarity=0.316 Sum_probs=176.2
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--
Q 006548 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-- 180 (641)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~-- 180 (641)
...+.|+|+++.|. +.+++|+++|+.+.+|+.+|++||||+||||++++|-..+.+++ |.|.+||+++...
T Consensus 260 ~g~v~F~~V~F~y~----~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~s---G~I~id~qdir~vtq 332 (497)
T COG5265 260 LGAVAFINVSFAYD----PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS---GSITIDGQDIRDVTQ 332 (497)
T ss_pred cceEEEEEEEeecc----ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcC---ceEEEcchhHHHhHH
Confidence 34689999999996 45789999999999999999999999999999999999999886 9999999875432
Q ss_pred ---CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHH
Q 006548 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGE 252 (641)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGe 252 (641)
++.+|.||||..||. -|...|+.|+. +. ..++.+..+.+...+.++....+.|.+ ..-.|||||
T Consensus 333 ~slR~aIg~VPQDtvLFN-Dti~yni~ygr----~~---at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSgge 404 (497)
T COG5265 333 QSLRRAIGIVPQDTVLFN-DTIAYNIKYGR----PD---ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGE 404 (497)
T ss_pred HHHHHHhCcCcccceehh-hhHHHHHhccC----cc---ccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCch
Confidence 356999999999985 49999997752 11 223445555555555544433333222 223499999
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 253 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
||||+|||+++.+|+||+|||.||+||..+.+++...|++++ .|+|.+++.|..+. + --+|.|+||++|+|++.|.-
T Consensus 405 kqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i-~~adeiivl~~g~i~erg~h 481 (497)
T COG5265 405 KQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-I-IDADEIIVLDNGRIVERGTH 481 (497)
T ss_pred HHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-c-cCCceEEEeeCCEEEecCcH
Confidence 999999999999999999999999999999999999999988 46677776888763 3 34899999999999999998
Q ss_pred hHHHH
Q 006548 333 LACLQ 337 (641)
Q Consensus 333 ~~~~~ 337 (641)
++++.
T Consensus 482 ~~ll~ 486 (497)
T COG5265 482 EELLA 486 (497)
T ss_pred HHHHH
Confidence 87765
No 358
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=4.1e-33 Score=316.92 Aligned_cols=188 Identities=22% Similarity=0.244 Sum_probs=155.6
Q ss_pred EEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCCC
Q 006548 111 LTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSEM 179 (641)
Q Consensus 111 ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~-----------~~G~~~~~ 179 (641)
+++.|. .+..+|++++ .+++||+++|+||||||||||+|+|+|+++|+. |+|. ++|.+...
T Consensus 79 ~~~~yg----~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~---G~i~~~~~~~~~~~~~~G~~l~~ 150 (590)
T PRK13409 79 PVHRYG----VNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNL---GDYEEEPSWDEVLKRFRGTELQN 150 (590)
T ss_pred ceEEec----CCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCC---ccccCCCcHHHHHHHhCChHHHH
Confidence 555553 1235999999 999999999999999999999999999999975 9997 88875321
Q ss_pred -------CCceEEEEcCCCccCCC---CCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCC
Q 006548 180 -------PYGSYGFVERETTLIGS---LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249 (641)
Q Consensus 180 -------~~~~~~yv~Q~~~l~~~---lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LS 249 (641)
....+++.+|.....|. .||+|++... +..++++++++.++|.+..++.++ +||
T Consensus 151 ~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~----------~~~~~~~~~l~~l~l~~~~~~~~~------~LS 214 (590)
T PRK13409 151 YFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV----------DERGKLDEVVERLGLENILDRDIS------ELS 214 (590)
T ss_pred HHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh----------hHHHHHHHHHHHcCCchhhcCChh------hCC
Confidence 11235666664433332 3999998531 234568899999999988888665 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 006548 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (641)
Q Consensus 250 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (641)
|||||||+||++|+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|+. +++..++|+|++|++|
T Consensus 215 gGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 215 GGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999988 99999988886 5788999999999863
No 359
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-32 Score=259.74 Aligned_cols=151 Identities=31% Similarity=0.508 Sum_probs=132.8
Q ss_pred EEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----Cc
Q 006548 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YG 182 (641)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~ 182 (641)
++|+++.++ .+.+|+++|+.+++|++++|+|+||||||||+++|+|++++.. |+|.++|.+.... .+
T Consensus 2 ~~~~~~~~~-----~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~---G~i~~~~~~~~~~~~~~~~~ 73 (157)
T cd00267 2 IENLSFRYG-----GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTS---GEILIDGKDIAKLPLEELRR 73 (157)
T ss_pred eEEEEEEeC-----CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCEEcccCCHHHHHh
Confidence 678888874 2369999999999999999999999999999999999998865 9999999764321 13
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
.++|++| |||||+||++||+++
T Consensus 74 ~i~~~~q----------------------------------------------------------lS~G~~~r~~l~~~l 95 (157)
T cd00267 74 RIGYVPQ----------------------------------------------------------LSGGQRQRVALARAL 95 (157)
T ss_pred ceEEEee----------------------------------------------------------CCHHHHHHHHHHHHH
Confidence 4566655 999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
+.+|++++|||||+|||..++..+.+.|+++.+.++|+++++|++ .++...||++++|++|+
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 999999999999999999999999999999987688999988886 57788899999999875
No 360
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-33 Score=261.88 Aligned_cols=186 Identities=24% Similarity=0.319 Sum_probs=160.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC----
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY---- 181 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~---- 181 (641)
++.+||+..- ..+.++.++||++.+||++-|.||||||||||||+|+|+.+|++ |+|.++|.+.....
T Consensus 3 L~a~~L~~~R-----~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~---G~v~~~~~~i~~~~~~~~ 74 (209)
T COG4133 3 LEAENLSCER-----GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDA---GEVYWQGEPIQNVRESYH 74 (209)
T ss_pred chhhhhhhcc-----CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCC---CeEEecCCCCccchhhHH
Confidence 4556666542 45689999999999999999999999999999999999999986 99999998754322
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (641)
+.+-|+--++.+=+.+||.|||.|-..+.-. .....+.++++.+||....|.+++ .||-||||||+|||-
T Consensus 75 ~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~----~~~~~i~~Al~~vgL~g~~dlp~~------~LSAGQqRRvAlArL 144 (209)
T COG4133 75 QALLYLGHQPGIKTELTALENLHFWQRFHGS----GNAATIWEALAQVGLAGLEDLPVG------QLSAGQQRRVALARL 144 (209)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHhCC----CchhhHHHHHHHcCcccccccchh------hcchhHHHHHHHHHH
Confidence 3466777778888899999999986554322 134568999999999999998776 999999999999999
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChH
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 309 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~ 309 (641)
++..+++.|||||+++||......+-.++..-+.+|..||.++|||..
T Consensus 145 ~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 145 WLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 999999999999999999999999999999988889999999999964
No 361
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.3e-32 Score=337.60 Aligned_cols=203 Identities=22% Similarity=0.312 Sum_probs=165.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 184 (641)
.++++|+++. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|.. |+|.++| .+
T Consensus 428 ~~~~~~~s~~-------~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~---G~i~~~g--------~i 489 (1490)
T TIGR01271 428 GLFFSNFSLY-------VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSE---GKIKHSG--------RI 489 (1490)
T ss_pred cccccccccc-------cCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC--------EE
Confidence 3566666553 2469999999999999999999999999999999999999875 9999988 48
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCC-----CCCCCCCHHHHHHHHHH
Q 006548 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERRRVRIA 259 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerqRv~IA 259 (641)
+||+|++.+++ .||+||+.|+... ..++.+++++..+|.+..+....|+ .....|||||||||+||
T Consensus 490 ayv~Q~~~l~~-~Ti~eNI~~g~~~--------~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lA 560 (1490)
T TIGR01271 490 SFSPQTSWIMP-GTIKDNIIFGLSY--------DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLA 560 (1490)
T ss_pred EEEeCCCccCC-ccHHHHHHhcccc--------chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHH
Confidence 99999999987 4999999886311 1123445566666655544433222 24568999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~-L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|||+.+|+++||||||+|||+.++..+.+. ++++. +|+|+|+++|++. .+ ..||+|++|++|+++..|+.+++.+
T Consensus 561 RAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~-~~-~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 561 RAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLE-HL-KKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChH-HH-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999985 66664 4899999999985 44 4699999999999999999888753
No 362
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=4.4e-31 Score=327.93 Aligned_cols=194 Identities=24% Similarity=0.335 Sum_probs=154.8
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (641)
.+.+|+|+|+.+++||+++|+|||||||||||++|+|+++|+. |+|.++ +.++|++|++.++ +.||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~---G~i~~~--------~~i~yv~Q~~~l~-~~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISE---GRVWAE--------RSIAYVPQQAWIM-NATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEEC--------CeEEEEeCCCccC-CCcHHH
Confidence 3569999999999999999999999999999999999999875 999874 3599999999887 579999
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcC-----CCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCC
Q 006548 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (641)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPts 276 (641)
|+.|+.. ...++.+++++..+|.+..+....| +.....|||||||||+|||||+.+|+++||||||+
T Consensus 740 nI~~~~~--------~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~s 811 (1560)
T PTZ00243 740 NILFFDE--------EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLS 811 (1560)
T ss_pred HHHcCCh--------hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccc
Confidence 9987421 1122344455555444333222111 23456899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
+||+.++..+++.+.....+|+|+|+++|++. .+ ..||+|++|++|++++.|+.+++.+
T Consensus 812 aLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~-~~-~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 812 ALDAHVGERVVEECFLGALAGKTRVLATHQVH-VV-PRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred cCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999999988754322335899999999874 34 6799999999999999999888653
No 363
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=3.4e-31 Score=306.53 Aligned_cols=215 Identities=16% Similarity=0.159 Sum_probs=150.0
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--- 180 (641)
..+.++|++++|. .+.+|+|+|+++.+|+.+||+|+||||||||||+|+|+.......+|+|.+.++.....
T Consensus 176 ~~I~i~nls~~y~-----~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t 250 (718)
T PLN03073 176 KDIHMENFSISVG-----GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTT 250 (718)
T ss_pred eeEEEceEEEEeC-----CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCC
Confidence 4699999999994 34699999999999999999999999999999999996411001237776543321000
Q ss_pred ----------------CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCC-----------------ccchHHHHHHHHHH
Q 006548 181 ----------------YGSYGFVERETTLIGSLTVREYLYYSALLQLPG-----------------FFCQRKNVVEDAIH 227 (641)
Q Consensus 181 ----------------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-----------------~~~~~~~~v~~~l~ 227 (641)
...+++++|++.+... ++.++.........+. .....++++.++++
T Consensus 251 ~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~ 329 (718)
T PLN03073 251 ALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILA 329 (718)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 0112334443221110 1111100000000000 00013445677888
Q ss_pred HcCCc-hHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeC
Q 006548 228 AMSLS-DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 306 (641)
Q Consensus 228 ~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~ 306 (641)
.+|+. +..++.+ ..|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|+|+++|+
T Consensus 330 ~lgl~~~~~~~~~------~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd 400 (718)
T PLN03073 330 GLSFTPEMQVKAT------KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHA 400 (718)
T ss_pred HCCCChHHHhCch------hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECC
Confidence 88885 4455544 499999999999999999999999999999999999999999999886 6799998887
Q ss_pred ChHHHHhcCCEEEEEeCCeEE-EEeChhH
Q 006548 307 SSTEVFGLFDRICLLSNGNTL-FFGETLA 334 (641)
Q Consensus 307 ~~~~i~~~~D~v~vL~~G~iv-~~G~~~~ 334 (641)
. ..+.++||++++|++|+++ |.|+.++
T Consensus 401 ~-~~l~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 401 R-EFLNTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred H-HHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 5 5788999999999999996 6676554
No 364
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=7e-31 Score=292.24 Aligned_cols=203 Identities=26% Similarity=0.317 Sum_probs=166.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 184 (641)
.++++|+++.| +.+.+++|+|+.+.+|+.+||||+||||||||||+|+|...|+. |+|...+. .++
T Consensus 3 ~i~~~~ls~~~-----g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~---G~i~~~~~------~~v 68 (530)
T COG0488 3 MITLENLSLAY-----GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS---GEVTRPKG------LRV 68 (530)
T ss_pred eEEEeeeEEee-----CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCC---CeEeecCC------ceE
Confidence 58999999999 35689999999999999999999999999999999999998875 99987542 369
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhc-------------CCCc----------------cchHHHHHHHHHHHcCCchHH
Q 006548 185 GFVERETTLIGSLTVREYLYYSALLQ-------------LPGF----------------FCQRKNVVEDAIHAMSLSDYA 235 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~-------------~~~~----------------~~~~~~~v~~~l~~lgL~~~~ 235 (641)
+|++|+..+.+..||.+.+.-+..-. ++.. ....+.+++.++..+|+.+.
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~- 147 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE- 147 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-
Confidence 99999999999999999886543100 0000 00123567788888888766
Q ss_pred hhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcC
Q 006548 236 NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 315 (641)
Q Consensus 236 ~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~ 315 (641)
++.++ +||||||.||+||++|+.+|++|+|||||++||..+..-+-+.|++. +| |+|+++|+ ...+-+.|
T Consensus 148 ~~~~~------~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~V~ 217 (530)
T COG0488 148 DRPVS------SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDNVA 217 (530)
T ss_pred cCchh------hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHHHh
Confidence 66555 99999999999999999999999999999999999999999888864 46 88886665 67899999
Q ss_pred CEEEEEeCCeEEE-EeCh
Q 006548 316 DRICLLSNGNTLF-FGET 332 (641)
Q Consensus 316 D~v~vL~~G~iv~-~G~~ 332 (641)
++|+-++.|++.. .|.-
T Consensus 218 t~I~~ld~g~l~~y~Gny 235 (530)
T COG0488 218 THILELDRGKLTPYKGNY 235 (530)
T ss_pred hheEEecCCceeEecCCH
Confidence 9999999998754 4543
No 365
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.4e-30 Score=263.03 Aligned_cols=189 Identities=21% Similarity=0.213 Sum_probs=133.8
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHH-HHHHcCCCCCCCceeEEEEC-----------C--EeCC---CCCceE
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLL-RAIAGRLPHSARMYGEVFVN-----------G--AKSE---MPYGSY 184 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl-~~LaG~~~~~~~~~G~I~~~-----------G--~~~~---~~~~~~ 184 (641)
...+|+|+|+++++||+++|+|+||||||||+ ..+.. .|++.+. | ...+ ......
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA--------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH--------HHHHHHhhcccchhhhhhcccCccccccccCCCc
Confidence 45699999999999999999999999999995 44431 1221110 0 0000 011122
Q ss_pred EEEcCCC--ccCCCCCHHH---HHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 185 GFVERET--TLIGSLTVRE---YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 185 ~yv~Q~~--~l~~~lTV~E---~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
.+..|++ .+.+..+|.. ...+...+. .. ....++ .+.++.++|.+ ..++ ++.+|||||||||+|
T Consensus 79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~--~~~~~~-~~~l~~~~l~~~~~~~------~~~~LSgG~~qrv~l 148 (226)
T cd03270 79 AIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-AR--VGIRER-LGFLVDVGLGYLTLSR------SAPTLSGGEAQRIRL 148 (226)
T ss_pred eEEecCCCCCCCCCccHHHHHHHHHHHHHHh-hh--hhHHHH-HHHHHHCCCCcccccC------ccCcCCHHHHHHHHH
Confidence 3333332 2344455542 222211111 11 112223 56899999975 3555 456999999999999
Q ss_pred HHHHHhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEe
Q 006548 259 ARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFG 330 (641)
Q Consensus 259 A~aL~~~P--~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G 330 (641)
||+|+.+| ++|||||||+|||+.++..+.+.|++++++|.|+|+++|++. ++ ++||++++| ++|+|+++|
T Consensus 149 aral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 149 ATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 99999998 599999999999999999999999999878999999999974 45 689999999 999999876
No 366
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=2.6e-30 Score=307.77 Aligned_cols=216 Identities=24% Similarity=0.349 Sum_probs=184.7
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..++++|++++|.. +...+|||||++|+|||.+||+|..|||||||+++|-++..|.+ |+|.+||.++..
T Consensus 1137 G~I~f~~~~~RYrp---~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~---G~I~IDgvdI~~igL~ 1210 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRP---NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAE---GEILIDGVDISKIGLH 1210 (1381)
T ss_pred CeEEEEEeEEEeCC---CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccC---CeEEEcCeecccccHH
Confidence 46999999999953 34689999999999999999999999999999999999998865 999999998642
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHH
Q 006548 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (641)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGer 253 (641)
.+++++.+|||+.+|. .|||.||. | .....++.+.++||..+|.+...+++++.+ ...++|-|||
T Consensus 1211 dLRsrlsIIPQdPvLFs-GTvR~NLD-------P-f~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQR 1281 (1381)
T KOG0054|consen 1211 DLRSRLSIIPQDPVLFS-GTVRFNLD-------P-FDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQR 1281 (1381)
T ss_pred HHHhcCeeeCCCCceec-CccccccC-------c-ccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHH
Confidence 2467999999999995 59999993 1 111256779999999999887766654322 2356999999
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (641)
|.+++||||+++.+||+|||+|++.|+.+-..|-+.||+-- +++|||.+.|.... +.+ +|||+||++|+++++|+|.
T Consensus 1282 QLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T-Vmd-~DrVlVld~G~v~EfdsP~ 1358 (1381)
T KOG0054|consen 1282 QLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT-VMD-SDRVLVLDAGRVVEFDSPA 1358 (1381)
T ss_pred HHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch-hhh-cCeEEEeeCCeEeecCChH
Confidence 99999999999999999999999999999999999999854 37999999998764 443 8999999999999999999
Q ss_pred HHHH
Q 006548 334 ACLQ 337 (641)
Q Consensus 334 ~~~~ 337 (641)
++++
T Consensus 1359 ~Ll~ 1362 (1381)
T KOG0054|consen 1359 ELLS 1362 (1381)
T ss_pred HHHh
Confidence 9875
No 367
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=3.1e-28 Score=290.03 Aligned_cols=210 Identities=23% Similarity=0.332 Sum_probs=181.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..++++|.+++.... .....|+|||+++++|+++||+|+-|||||+||.+|.|.++.. +|+|.++|.
T Consensus 517 ~~i~i~~~sfsW~~~--~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~gs-------- 583 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDSE--SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNGS-------- 583 (1381)
T ss_pred ceEEEeeeeEecCCC--CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcCe--------
Confidence 468999999987542 3345999999999999999999999999999999999999875 499999985
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC-----CCCCCCHHHHHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERRRVRI 258 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerqRv~I 258 (641)
++||+|++-++ +.||+||+.|+.. -.+++-+++++.+.|.+-.+.++.|+. ....||||||||+++
T Consensus 584 iaYv~Q~pWI~-ngTvreNILFG~~--------~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsL 654 (1381)
T KOG0054|consen 584 VAYVPQQPWIQ-NGTVRENILFGSP--------YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISL 654 (1381)
T ss_pred EEEeccccHhh-CCcHHHhhhcCcc--------ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHH
Confidence 89999999988 5699999998631 245678999999999887777765543 345699999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (641)
|||+-++.+|.+||.|.|++|++...++.+..-+..-+++|+|++|||. +..+.||.|++|++|+|+..|+.+|+.+
T Consensus 655 ARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 655 ARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred HHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 9999999999999999999999999999886665555689999999975 5678899999999999999999998873
No 368
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.8e-30 Score=238.70 Aligned_cols=209 Identities=20% Similarity=0.260 Sum_probs=168.3
Q ss_pred eEEEEeEEEEEecccc--cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe--CC--
Q 006548 105 SVVWKDLTVTIKGKRR--YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK--SE-- 178 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~--~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~--~~-- 178 (641)
.+..+|+++++.-+.+ -..++|+|+|+.++.||++++=||||+|||||||+|-|-+.|++ |+|++.-.. .+
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~---G~I~v~H~g~~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDE---GQILVRHEGEWVDLV 80 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCC---ceEEEEeCcchhhhh
Confidence 5788899887743322 23579999999999999999999999999999999999999986 999985321 11
Q ss_pred ---------CCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCC
Q 006548 179 ---------MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249 (641)
Q Consensus 179 ---------~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LS 249 (641)
.+++.+|||.|--...|..+..|.+..++.-+. ........++..++..+++.+..-.+ .|..+|
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~g-v~~~~a~~~a~~Ll~rLnlperLW~L-----aPaTFS 154 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARG-VPREVARAKAADLLTRLNLPERLWSL-----APATFS 154 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcC-CCHHHHHHHHHHHHHHcCCCHHHhcC-----CCcccC
Confidence 123568999999888999888888877654331 12223566788999999997665543 456999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 250 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
|||+|||.|||.++.+-+||+|||||+.||..++..++++|++-+..|..+|=+-| +.+.-...|||++-+..
T Consensus 155 GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFH-Deevre~vadR~~~~~~ 227 (235)
T COG4778 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFH-DEEVREAVADRLLDVSA 227 (235)
T ss_pred CchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeec-cHHHHHHHhhheeeccc
Confidence 99999999999999999999999999999999999999999998888988877555 44444568999988753
No 369
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=3e-30 Score=239.55 Aligned_cols=132 Identities=35% Similarity=0.597 Sum_probs=117.4
Q ss_pred eeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CCceEEEEcCCCccCCCCCHH
Q 006548 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----PYGSYGFVERETTLIGSLTVR 200 (641)
Q Consensus 126 L~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~ 200 (641)
|+|+|+++++||+++|+|+||||||||+++|+|..++. +|+|.++|.+... ..+.++|++|++.+++.+||+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPD---SGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHES---EEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccc---ccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999999999999999999885 4999999998654 135799999999999999999
Q ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCC
Q 006548 201 EYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (641)
Q Consensus 201 E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPts 276 (641)
|| ..+++++++++.+++.+..++.++ .....|||||||||+||+||+.+|++|||||||+
T Consensus 78 ~~--------------~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 EN--------------ESDERIEEVLKKLGLEDLLDRKIG--QRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HH--------------HHHHHHHHHHHHTTHGGGTGSBGT--SCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cc--------------cccccccccccccccccccccccc--cccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 99 134568899999999988888774 3447999999999999999999999999999996
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=4.9e-29 Score=255.69 Aligned_cols=195 Identities=20% Similarity=0.253 Sum_probs=150.1
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHH-----cCC-----CCC--CCcee------EEEECCEeCCCCC---
Q 006548 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA-----GRL-----PHS--ARMYG------EVFVNGAKSEMPY--- 181 (641)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~La-----G~~-----~~~--~~~~G------~I~~~G~~~~~~~--- 181 (641)
..-|+||+..++.|++++|.|+||||||||++.+. ... .|. ....| -|.++..++....
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 35799999999999999999999999999998552 110 011 00112 3566655431100
Q ss_pred ----------------------------ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch
Q 006548 182 ----------------------------GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD 233 (641)
Q Consensus 182 ----------------------------~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 233 (641)
..+.|..++......+||.|++.|...+. ..+++.++++.+||.+
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~-------~~~~~~~~L~~vgL~~ 160 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP-------KIARKLQTLCDVGLGY 160 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh-------hHHHHHHHHHHcCCch
Confidence 01345556656667899999998865331 2245678999999987
Q ss_pred -HHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChH
Q 006548 234 -YANKLIGGHCYMKGLPCGERRRVRIARELVMR---PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 309 (641)
Q Consensus 234 -~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~---P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~ 309 (641)
..++. +..||||||||+.||++|+.+ |+++||||||+|||+..+..+.+.|++++++|.|+|+++|++.
T Consensus 161 l~l~~~------~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~- 233 (261)
T cd03271 161 IKLGQP------ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD- 233 (261)
T ss_pred hhhcCc------cccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-
Confidence 35554 459999999999999999996 7999999999999999999999999999988999999999874
Q ss_pred HHHhcCCEEEEE------eCCeEEEEeCh
Q 006548 310 EVFGLFDRICLL------SNGNTLFFGET 332 (641)
Q Consensus 310 ~i~~~~D~v~vL------~~G~iv~~G~~ 332 (641)
.+ +.||+++.| ++|++++.|++
T Consensus 234 ~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 VI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 44 579999999 89999999874
No 371
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=5.2e-28 Score=269.31 Aligned_cols=203 Identities=25% Similarity=0.308 Sum_probs=166.9
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 006548 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (641)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~ 182 (641)
...++++|+++.|.+ .+.+++++|+.+.+|+.+||+||||+|||||||+|+|...|.+ |+|.+.- .-
T Consensus 319 ~~vl~~~~~~~~y~~----~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~---G~v~~g~------~v 385 (530)
T COG0488 319 KLVLEFENVSKGYDG----GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLS---GTVKVGE------TV 385 (530)
T ss_pred CeeEEEeccccccCC----CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCC---ceEEeCC------ce
Confidence 457899999999953 2689999999999999999999999999999999999988864 9998742 14
Q ss_pred eEEEEcCCC-ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 183 SYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 183 ~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
.+||..|+. .+.+..|+.|++.-.. +. ..+..+...|..+++. +...+.+ ..||||||.||.+|+
T Consensus 386 ~igyf~Q~~~~l~~~~t~~d~l~~~~----~~---~~e~~~r~~L~~f~F~~~~~~~~v------~~LSGGEk~Rl~La~ 452 (530)
T COG0488 386 KIGYFDQHRDELDPDKTVLEELSEGF----PD---GDEQEVRAYLGRFGFTGEDQEKPV------GVLSGGEKARLLLAK 452 (530)
T ss_pred EEEEEEehhhhcCccCcHHHHHHhhC----cc---ccHHHHHHHHHHcCCChHHHhCch------hhcCHhHHHHHHHHH
Confidence 589999986 5557889999985321 11 1256788999999996 4455555 499999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE-eChhHHH
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF-GETLACL 336 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~-G~~~~~~ 336 (641)
.++.+|.+|||||||++||..+...+.+.|... ..|||+++|+. ..+..+|++++.+.+ ++..+ |..++..
T Consensus 453 ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr-~Fl~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 453 LLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDR-YFLDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred HhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 999999999999999999999999999999886 35788877775 689999999999998 55444 6655443
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=1.3e-28 Score=243.60 Aligned_cols=165 Identities=19% Similarity=0.238 Sum_probs=129.5
Q ss_pred eceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC------CCceeEEEECCEeCCC--CCceEEEEcCCCccCCCCC
Q 006548 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS------ARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLT 198 (641)
Q Consensus 127 ~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~------~~~~G~I~~~G~~~~~--~~~~~~yv~Q~~~l~~~lT 198 (641)
+++++.+.+| +++|+||||||||||+++|+|+.++. ....|++.++|++... ..+.++|++|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6788999999 99999999999999999999997654 1123567777765322 235799999988765
Q ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHH----hCCcEEEEeCC
Q 006548 199 VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV----MRPHVLFIDEP 274 (641)
Q Consensus 199 V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~----~~P~iLlLDEP 274 (641)
|. . ...++++++++. .+..++ .+..||||||||++||++|+ .+|++++||||
T Consensus 89 ------~~----~-----~~~~~~~~~l~~---~~~~~~------~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP 144 (197)
T cd03278 89 ------YS----I-----ISQGDVSEIIEA---PGKKVQ------RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEV 144 (197)
T ss_pred ------ee----E-----EehhhHHHHHhC---CCcccc------chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 11 0 012356677766 334444 44599999999999999997 46699999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 275 LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 275 tsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
|+|||+.++..+.+.|+++++ +.|||+++|++. . .+.||+++.+..
T Consensus 145 ~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~-~-~~~~d~v~~~~~ 190 (197)
T cd03278 145 DAALDDANVERFARLLKEFSK-ETQFIVITHRKG-T-MEAADRLYGVTM 190 (197)
T ss_pred cccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-H-HhhcceEEEEEe
Confidence 999999999999999999975 688999888874 4 468999999964
No 373
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.1e-27 Score=260.82 Aligned_cols=211 Identities=21% Similarity=0.337 Sum_probs=173.8
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--
Q 006548 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-- 180 (641)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~-- 180 (641)
...++++|++.. ..++|+||++++||+++|-|-=|||+|-|+++|.|..++.+ |+|.+||++....
T Consensus 261 ~~~l~v~~l~~~---------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~---G~i~l~G~~v~~~sp 328 (500)
T COG1129 261 EPVLEVRNLSGG---------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASS---GEILLDGKPVRIRSP 328 (500)
T ss_pred CcEEEEecCCCC---------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCC---ceEEECCEEccCCCH
Confidence 346788888642 25899999999999999999999999999999999877654 9999999976432
Q ss_pred ----CceEEEEcCC---CccCCCCCHHHHHHHHHHhcCCC----ccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCC
Q 006548 181 ----YGSYGFVERE---TTLIGSLTVREYLYYSALLQLPG----FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGL 248 (641)
Q Consensus 181 ----~~~~~yv~Q~---~~l~~~lTV~E~l~~~~~~~~~~----~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~L 248 (641)
...++||+.| ..++..++|++|+.++...+... ...+.++.+++..+.+++. .-.+. .+..|
T Consensus 329 ~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~------~v~~L 402 (500)
T COG1129 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQ------PIGTL 402 (500)
T ss_pred HHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccc------hhhcC
Confidence 2369999986 56889999999998873322211 1112455688888998885 22333 34599
Q ss_pred CHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 006548 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (641)
Q Consensus 249 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (641)
|||.+|||.|||.|..+|++|||||||.|.|.-++.+|.++|++++++|++||++++.. +|+..+||||+||++|+++.
T Consensus 403 SGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 403 SGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIVG 481 (500)
T ss_pred CchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999999999976665 69999999999999999987
Q ss_pred EeCh
Q 006548 329 FGET 332 (641)
Q Consensus 329 ~G~~ 332 (641)
.=+.
T Consensus 482 e~~~ 485 (500)
T COG1129 482 ELDR 485 (500)
T ss_pred Eecc
Confidence 5443
No 374
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=4.4e-29 Score=233.27 Aligned_cols=206 Identities=25% Similarity=0.361 Sum_probs=171.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~---- 180 (641)
.+.++|+...- -|-.+|+.+..||++-++|||||||||||-.++|+++.. |+|.++|.+.+..
T Consensus 3 l~qln~v~~~t---------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~s----Gsi~~~G~~l~~~~~~e 69 (248)
T COG4138 3 LMQLNDVAEST---------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGS----GSIQFAGQPLEAWSATE 69 (248)
T ss_pred eeeeccccccc---------cccccccccccceEEEEECCCCccHHHHHHHHhCCCCCC----ceEEECCcchhHHhHhH
Confidence 35667776532 477889999999999999999999999999999998753 9999999875421
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
.++-+|..|+..-...+.|..++.. ..|. ......++++.+.++|.+...+.+. .|||||-|||-+|
T Consensus 70 LArhRAYLsQqq~p~f~mpV~~YL~L----~qP~--~~~a~~i~~i~~~L~l~DKL~Rs~~------qLSGGEWQRVRLA 137 (248)
T COG4138 70 LARHRAYLSQQQTPPFAMPVWHYLTL----HQPD--KTRTELLNDVAGALALDDKLGRSTN------QLSGGEWQRVRLA 137 (248)
T ss_pred HHHHHHHHhhccCCcchhhhhhhhhh----cCch--HHHHHHHHHHHhhhcccchhhhhhh------hcCcccceeeEEe
Confidence 2345788887666667889888854 3333 2355668889999999988887664 9999999999999
Q ss_pred HHHHh-----CC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 260 RELVM-----RP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 260 ~aL~~-----~P--~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
...+. || ++|++|||.++||...+..+-++|.+++..|.+||++.|+.. ...+.+|++++|++|++...|..
T Consensus 138 av~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLN-hTLrhA~~~wLL~rG~l~~~G~~ 216 (248)
T COG4138 138 AVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKRGKLLASGRR 216 (248)
T ss_pred EEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchh-hHHHHHHHHHHHhcCeEEeecch
Confidence 87764 44 699999999999999999999999999999999999888775 67788999999999999999999
Q ss_pred hHHH
Q 006548 333 LACL 336 (641)
Q Consensus 333 ~~~~ 336 (641)
++++
T Consensus 217 ~eVl 220 (248)
T COG4138 217 EEVL 220 (248)
T ss_pred hhhc
Confidence 9876
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=1.6e-27 Score=242.99 Aligned_cols=184 Identities=17% Similarity=0.191 Sum_probs=127.8
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC----------------CCCCCC---cee--EEEECCEeCC--
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR----------------LPHSAR---MYG--EVFVNGAKSE-- 178 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~----------------~~~~~~---~~G--~I~~~G~~~~-- 178 (641)
.+.++++++ |++++|+||||||||||+++|+++ +.++.. ..+ +|.+++.+..
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~ 88 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFP 88 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccC
Confidence 356778876 789999999999999999999843 222220 112 5555553211
Q ss_pred ---C---CCceEEEEcCCCccCC-CCCHHHHHHHHHHhcCCCccc---hHHHHHHHHHHHcCCchHHhhhhcCCCCCCCC
Q 006548 179 ---M---PYGSYGFVERETTLIG-SLTVREYLYYSALLQLPGFFC---QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248 (641)
Q Consensus 179 ---~---~~~~~~yv~Q~~~l~~-~lTV~E~l~~~~~~~~~~~~~---~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~L 248 (641)
. ..+.+++++|+..+++ ..|..|...+........... ....++ .+.+++.+..+. .+..|
T Consensus 89 ~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i---~~l~~l~~~~~~------~~~~l 159 (243)
T cd03272 89 IDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKI---NSLTNMKQDEQQ------EMQQL 159 (243)
T ss_pred CCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCch---HHhhhccccccc------ccccc
Confidence 1 1245889988887776 467777666554443322100 012223 333444443444 44599
Q ss_pred CHHHHHHHHHHHHHHh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 249 PCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 249 SGGerqRv~IA~aL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
|||||||++||++|+. +|+++|+||||+|||+.++..+.+.|+++++ ++++|+++|. . ++.++||++++|.
T Consensus 160 S~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~-~-~~~~~~d~i~~l~ 234 (243)
T cd03272 160 SGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFR-P-ELLEVADKFYGVK 234 (243)
T ss_pred CHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecC-H-HHHhhCCEEEEEE
Confidence 9999999999999974 5899999999999999999999999999865 6777765554 3 6789999999995
No 376
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.94 E-value=1.4e-26 Score=256.68 Aligned_cols=196 Identities=23% Similarity=0.330 Sum_probs=164.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..++++||++.-++ ++..|++.++.+++||.+.|.||||||||||+|+|+|+.|.++ |+|..- ....
T Consensus 391 ~~i~~~nl~l~~p~----~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~---G~I~~P------~~~~ 457 (604)
T COG4178 391 HGITLENLSLRTPD----GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGS---GRISMP------ADSA 457 (604)
T ss_pred ceeEEeeeeEECCC----CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCC---CceecC------CCCc
Confidence 57999999998763 4589999999999999999999999999999999999999865 877653 2245
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccc-hHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFC-QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (641)
+-|+||.+.+. ..|.+|.|.|+. ... -.++.+.++|+++||.++.++.-+.++.-+.||+||||||++||.|
T Consensus 458 ~lflpQ~PY~p-~GtLre~l~YP~------~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARil 530 (604)
T COG4178 458 LLFLPQRPYLP-QGTLREALCYPN------AAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLL 530 (604)
T ss_pred eEEecCCCCCC-CccHHHHHhCCC------CCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHH
Confidence 78999999865 559999998752 211 2567789999999999999887665667788999999999999999
Q ss_pred HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
+++|++++|||.|++||+.++..++++|++-. .+.|||.+.|.+. +..+.++.+-+.
T Consensus 531 L~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 531 LHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred HcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeec
Confidence 99999999999999999999999999998843 3688998888874 566667665553
No 377
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=6.6e-28 Score=241.17 Aligned_cols=186 Identities=15% Similarity=0.171 Sum_probs=134.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-CCCce
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-MPYGS 183 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~-~~~~~ 183 (641)
.++++|.. .| ..+++|+++++ ++++|+||||||||||+++|.-. +|.+.. ...+.
T Consensus 5 ~l~l~nfk-~~-----~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-------------~G~~~~~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SY-----AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-------------FGFRASKMRQKK 60 (212)
T ss_pred EEEEECcc-cC-----CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-------------hccCHHHhhhhh
Confidence 35666654 33 34578998887 89999999999999999999832 121111 11245
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhc------CCCccchHHH---HHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSALLQ------LPGFFCQRKN---VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~------~~~~~~~~~~---~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (641)
+++++|+..+.+.+|++|++.+..... ..+...+... ..+++++.++|.+..++.+ ..||+||||
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~------~~lS~G~~~ 134 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI------SNLSGGEKT 134 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch------hhcCHHHHH
Confidence 788888888888888888765433211 0000000001 1256667778877676654 489999999
Q ss_pred HHHHHHHHHh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 255 RVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 255 Rv~IA~aL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
|++||++++. +|++++|||||+|||+.++..+.+.|+++++ +.++|+++|++ ++.++||++++|..
T Consensus 135 r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 135 LSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 9999999974 4799999999999999999999999999864 55667767875 67899999999974
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=1.2e-26 Score=238.03 Aligned_cols=176 Identities=17% Similarity=0.130 Sum_probs=135.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE-eC-------CCCCceEEEEcCCC---------ccCCCCC
Q 006548 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA-KS-------EMPYGSYGFVERET---------TLIGSLT 198 (641)
Q Consensus 136 Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~-~~-------~~~~~~~~yv~Q~~---------~l~~~lT 198 (641)
..+++|+||||||||||+++|++++.+.. .|++...|. +. ......+++++|++ .+.|.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~--~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITN--LSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccc--cccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 55999999999999999999999987642 267777665 21 11224688999984 3567889
Q ss_pred HHHHHHHHHHhcCC-CccchHHHHHHHHHHHcCCc--------------------hHHhhhhcCCCCCCCCCHHHHHHHH
Q 006548 199 VREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLS--------------------DYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 199 V~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~--------------------~~~~~~ig~~~~~~~LSGGerqRv~ 257 (641)
|.+++.++...+.. .......+++.++++.+|+. +..+ ..+.+||||||||++
T Consensus 103 V~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~------~~~~~lS~G~~qr~~ 176 (251)
T cd03273 103 VTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWK------ESLTELSGGQRSLVA 176 (251)
T ss_pred EEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhc------ccccccCHHHHHHHH
Confidence 99888654221110 01112446788999999985 2222 356699999999999
Q ss_pred HHHHHH----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 258 IARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 258 IA~aL~----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
||++|+ .+|+++++||||+|||+.++..+.+.|+++. +|.++|+++|.+ ++.+.||+++-+.
T Consensus 177 la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 177 LSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 999998 4789999999999999999999999999985 488999989984 6788899999875
No 379
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.93 E-value=2.9e-25 Score=237.54 Aligned_cols=219 Identities=22% Similarity=0.287 Sum_probs=180.3
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CC--
Q 006548 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EM-- 179 (641)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~-~~-- 179 (641)
...++++||++.-. .+...+++|||.+++||+++|.|-.|-|-+.|+.+|+|+.++.. |+|.++|++. ..
T Consensus 255 ~~vL~V~~L~v~~~----~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~---G~I~l~G~~v~~~~~ 327 (501)
T COG3845 255 EVVLEVEDLSVKDR----RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPAS---GRILLNGKDVLGRLS 327 (501)
T ss_pred CeEEEEeeeEeecC----CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCC---ceEEECCEeccccCC
Confidence 45789999987643 23578999999999999999999999999999999999987754 9999999985 11
Q ss_pred ----CCceEEEEcCCC---ccCCCCCHHHHHHHHHHhcCC----C--ccchHHHHHHHHHHHcCCchHHhhhhcCCCCCC
Q 006548 180 ----PYGSYGFVERET---TLIGSLTVREYLYYSALLQLP----G--FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246 (641)
Q Consensus 180 ----~~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~----~--~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 246 (641)
....++|||+|. .+.+.+|+.||+.+....+.| . ......+..+++++++++...- .....+
T Consensus 328 ~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~-----~~~~a~ 402 (501)
T COG3845 328 PRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPS-----PDAPAR 402 (501)
T ss_pred HHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCC-----CCcchh
Confidence 124689999985 577899999999776432211 0 1122456678889988876211 123467
Q ss_pred CCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 247 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
.||||++||+-+||+|..+|++|++.+||.|||..+...+.+.|.++++.|+.|++++. ..+|++.+||||.+|++|++
T Consensus 403 ~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~-dLDEil~lsDrIaVi~~Gri 481 (501)
T COG3845 403 SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISE-DLDEILELSDRIAVIYEGRI 481 (501)
T ss_pred hcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEeh-hHHHHHHhhheeeeeeCCce
Confidence 99999999999999999999999999999999999999999999999999999999655 45799999999999999999
Q ss_pred EEEeChhH
Q 006548 327 LFFGETLA 334 (641)
Q Consensus 327 v~~G~~~~ 334 (641)
+...++++
T Consensus 482 ~~~~~~~~ 489 (501)
T COG3845 482 VGIVPPEE 489 (501)
T ss_pred eccccccc
Confidence 98887765
No 380
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.93 E-value=9.6e-26 Score=225.82 Aligned_cols=191 Identities=16% Similarity=0.124 Sum_probs=129.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEe-CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE----eCCC
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA----KSEM 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~-~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~----~~~~ 179 (641)
.++++|+. .|.+ . ++++|... +|++++|+||||||||||+++|++.+-.. ..+....+.. ....
T Consensus 5 ~i~l~nf~-~y~~-----~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~--~~~~~~~~~~~~~~~~~~ 73 (213)
T cd03279 5 KLELKNFG-PFRE-----E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGK--TPRYGRQENLRSVFAPGE 73 (213)
T ss_pred EEEEECCc-CcCC-----c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecC--ccccccchhHHHHhcCCC
Confidence 46777776 4421 1 45565543 58999999999999999999999643111 1132322210 1112
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHH-HHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVED-AIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
....+++++|+..... ++.... .. ..++..+. .++..++.+..++ .+..||||||||++|
T Consensus 74 ~~~~v~~~f~~~~~~~--~~~r~~---------gl--~~~~~~~~~~l~~g~l~~~l~~------~~~~lS~G~~~r~~l 134 (213)
T cd03279 74 DTAEVSFTFQLGGKKY--RVERSR---------GL--DYDQFTRIVLLPQGEFDRFLAR------PVSTLSGGETFLASL 134 (213)
T ss_pred ccEEEEEEEEECCeEE--EEEEec---------CC--CHHHHHHhhhhhhcchHHHhcC------CccccCHHHHHHHHH
Confidence 2346888888763211 111111 10 01111111 2344445555555 445999999999999
Q ss_pred HHHHHh----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 006548 259 ARELVM----------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (641)
Q Consensus 259 A~aL~~----------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (641)
|++|+. +|+++||||||+|||+.+...+.+.|+++++++.|+|+++|++ +.+...+|+++++++|.+
T Consensus 135 a~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~-~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 135 SLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVE-ELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECch-HHHHhhCcEEEEEecCCC
Confidence 999985 5789999999999999999999999999987789999999987 478899999999998853
No 381
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.93 E-value=2.3e-25 Score=221.65 Aligned_cols=163 Identities=17% Similarity=0.197 Sum_probs=122.9
Q ss_pred eeeEEeCCcEEEEECCCCCcHHHHHHHHH----cCCCCCCCceeEEEECCEeC--CCCCceEEEEcCCC-----ccCCCC
Q 006548 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIA----GRLPHSARMYGEVFVNGAKS--EMPYGSYGFVERET-----TLIGSL 197 (641)
Q Consensus 129 vs~~i~~Ge~~aIiGpsGsGKSTLl~~La----G~~~~~~~~~G~I~~~G~~~--~~~~~~~~yv~Q~~-----~l~~~l 197 (641)
.++.+.+| +++|+||||||||||+++|. |..+++. |.+..+.... ......+++++|++ .....+
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~---~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNS---KGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCccc---ccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566677 99999999999999999995 8877653 5554111111 12234688888887 445556
Q ss_pred CHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHH------HHHHHHHHhCCcEEEE
Q 006548 198 TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR------VRIARELVMRPHVLFI 271 (641)
Q Consensus 198 TV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR------v~IA~aL~~~P~iLlL 271 (641)
|+.|++.+. + ++.+++.+ ++ .++.||+||||| ++||++|+.+|+++++
T Consensus 92 ~~~~~~~~~-----~------~~~~~~~~---------~~------~~~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 92 AILENVIFC-----H------QGESNWPL---------LD------MRGRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred hHhhceeee-----c------hHHHHHHH---------hc------CccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 888888542 1 11223222 33 445999999996 7899999999999999
Q ss_pred eCCCCCCCHHHHH-HHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 272 DEPLYHLDSVSAL-LMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 272 DEPtsgLD~~~~~-~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
||||++||+.++. .+.+.|++++++ |.++|+++|++. ....||+++.|.+
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 9999999999999 999999999876 889999999864 3467999999963
No 382
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.92 E-value=2.1e-24 Score=263.64 Aligned_cols=136 Identities=18% Similarity=0.215 Sum_probs=110.9
Q ss_pred cCCCCCHHHHHHHHHHhc--CCCccchHHHHHHHHHHHcCCchH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHH---hCC
Q 006548 193 LIGSLTVREYLYYSALLQ--LPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELV---MRP 266 (641)
Q Consensus 193 l~~~lTV~E~l~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LSGGerqRv~IA~aL~---~~P 266 (641)
.+...||.|+|.+...-. ......+..+++ ++++.+||.+. .++.+ ..||||||||++||++|+ .+|
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~------~tLSGGE~QRV~LAraL~~~~~~P 831 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL------SSLSGGEIQRLKLAYELLAPSKKP 831 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc------ccCCHHHHHHHHHHHHHhhcCCCC
Confidence 456789999998765421 111112234455 58899999876 66644 499999999999999998 699
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe------CCeEEEEeChhHHHH
Q 006548 267 HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS------NGNTLFFGETLACLQ 337 (641)
Q Consensus 267 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~------~G~iv~~G~~~~~~~ 337 (641)
++|||||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.||++++|. +|+++..|+++++..
T Consensus 832 ~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 832 TLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 999999999999999999999999999988999999888874 56 8999999996 799999999988753
No 383
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.92 E-value=4.3e-24 Score=251.38 Aligned_cols=126 Identities=21% Similarity=0.263 Sum_probs=106.2
Q ss_pred CCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCC---cEEEEe
Q 006548 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARELVMRP---HVLFID 272 (641)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P---~iLlLD 272 (641)
+||.|++.|...+. ...+..+.++.+||.. ..++.+ ..||||||||+.||++|+.+| +++|||
T Consensus 792 ltv~E~l~~f~~~~-------~i~~~l~~L~~vgL~~l~l~~~~------~tLSgGEkQRl~LAraL~~~p~~~~llILD 858 (943)
T PRK00349 792 MTVEEALEFFEAIP-------KIARKLQTLVDVGLGYIKLGQPA------TTLSGGEAQRVKLAKELSKRSTGKTLYILD 858 (943)
T ss_pred CcHHHHHHHHHhch-------hhhHHHHHHHHCCCCcccccCCc------ccCCHHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 78888888754321 1123467899999975 355544 499999999999999999999 999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHHHH
Q 006548 273 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (641)
Q Consensus 273 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (641)
|||+|||+..+..+++.|+++.++|.|||+++|++. .+ ..||+|+.| ++|++++.|+++++..
T Consensus 859 EPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 859 EPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 999999999999999999999888999999988874 45 579999999 7999999999988754
No 384
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.91 E-value=6.6e-25 Score=227.49 Aligned_cols=203 Identities=19% Similarity=0.230 Sum_probs=160.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC---
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY--- 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~--- 181 (641)
.++++|+.|.|.. ..-=+..||+++++||++-|+|.||||||||+++|.|+.+|++ |+|++||+++....
T Consensus 322 ~lelrnvrfay~~----~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pqs---G~I~ldg~pV~~e~led 394 (546)
T COG4615 322 TLELRNVRFAYQD----NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQS---GEILLDGKPVSAEQLED 394 (546)
T ss_pred ceeeeeeeeccCc----ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCC---CceeECCccCCCCCHHH
Confidence 6899999999853 2246889999999999999999999999999999999999986 99999999865321
Q ss_pred -c-eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 182 -G-SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 182 -~-~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
+ -++-|+-|-.+|+.+ +. +.. ....+.++..++.+.|.+...-.-| +-..-.||.|||||+++-
T Consensus 395 YR~LfSavFsDyhLF~~l-----------l~-~e~-~as~q~i~~~LqrLel~~ktsl~d~-~fs~~kLStGQkKRlAll 460 (546)
T COG4615 395 YRKLFSAVFSDYHLFDQL-----------LG-PEG-KASPQLIEKWLQRLELAHKTSLNDG-RFSNLKLSTGQKKRLALL 460 (546)
T ss_pred HHHHHHHHhhhHhhhHhh-----------hC-Ccc-CCChHHHHHHHHHHHHhhhhcccCC-cccccccccchHHHHHHH
Confidence 1 233344444444432 11 111 1245668889999988765433222 334568999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK-LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~-l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
.||+-+-+|+++||=-+--||.-++.+.+.+-- ++++|+||+.++|++ .-+..+||++.+++|++++.-
T Consensus 461 ~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 461 LALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 999999999999999999999999999986654 567799999988886 468899999999999998754
No 385
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=3.1e-23 Score=243.77 Aligned_cols=125 Identities=19% Similarity=0.227 Sum_probs=102.7
Q ss_pred CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCCCHHHHHHHHHHHHHHh---CCcEEEE
Q 006548 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARELVM---RPHVLFI 271 (641)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~---~P~iLlL 271 (641)
.+||.|.+.|...+. ...+..++++.+||.. ..++. +..|||||+||+.||++|+. +|++++|
T Consensus 789 ~~tv~e~~~f~~~~~-------~i~~~l~~L~~~gL~~l~l~~~------~~tLSgGe~QRl~LA~aL~~~~~~p~llIL 855 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP-------SISRKLQTLCDVGLGYIKLGQP------ATTLSGGEAQRIKLAKELSKRSTGRTLYIL 855 (924)
T ss_pred CCcHHHHHHHHHhcc-------chhHHHHHHHHcCCCchhhcCc------cccCCHHHHHHHHHHHHHhhcCCCCCEEEE
Confidence 467777777654321 1123457889999975 35554 45999999999999999997 5999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHH
Q 006548 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLAC 335 (641)
Q Consensus 272 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~ 335 (641)
||||+|||+..+..+++.|+++.++|.|||+++|++. .+ ..||++++| ++|++++.|+++++
T Consensus 856 DEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 856 DEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999999999999999999988999999888874 45 579999999 79999999998764
No 386
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.90 E-value=1.3e-23 Score=225.84 Aligned_cols=211 Identities=26% Similarity=0.293 Sum_probs=141.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-Cce
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGS 183 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~-~~~ 183 (641)
.+.++|+++.+. ++.+++|+++.+.+|+-++|+|+|||||||+|++|.|...|.....+ ++.-.+..... .+.
T Consensus 75 dvk~~sls~s~~-----g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d-~y~ls~e~~ps~~~a 148 (614)
T KOG0927|consen 75 DVKIESLSLSFH-----GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID-FYLLSREIEPSEKQA 148 (614)
T ss_pred cceeeeeeeccC-----CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccc-hhhhcccCCCchHHH
Confidence 588999999984 56899999999999999999999999999999999999877531112 22111111100 000
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHH-Hh-----------------cCCC-ccchHHHHHHHHHHHcCC-chHHhhhhcCCC
Q 006548 184 YGFVERETTLIGSLTVREYLYYSA-LL-----------------QLPG-FFCQRKNVVEDAIHAMSL-SDYANKLIGGHC 243 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~-~~-----------------~~~~-~~~~~~~~v~~~l~~lgL-~~~~~~~ig~~~ 243 (641)
+-++.+ +.-..+.-+.+-. .+ ++.. .....+.++.++|..+|. .+..++.+
T Consensus 149 v~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~---- 219 (614)
T KOG0927|consen 149 VQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKV---- 219 (614)
T ss_pred HHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHh----
Confidence 000000 0000000000000 00 0000 001133456667777765 56777755
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
.+||||+|.|+++||+|..+|++|+|||||+|||..+..-+-+.|.+.-+ + ++|+ +.|+.+.+-.+|.+|+-|.+
T Consensus 220 --~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~-~-~lVi-~sh~QDfln~vCT~Ii~l~~ 294 (614)
T KOG0927|consen 220 --KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR-I-ILVI-VSHSQDFLNGVCTNIIHLDN 294 (614)
T ss_pred --hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC-c-eEEE-EecchhhhhhHhhhhheecc
Confidence 49999999999999999999999999999999999999988888877532 1 4555 44556789999999999999
Q ss_pred Ce-EEEEeChhHH
Q 006548 324 GN-TLFFGETLAC 335 (641)
Q Consensus 324 G~-iv~~G~~~~~ 335 (641)
++ +.|.|+-++.
T Consensus 295 kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 295 KKLIYYEGNYDQY 307 (614)
T ss_pred cceeeecCCHHHH
Confidence 99 5555665543
No 387
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.90 E-value=1.5e-23 Score=201.31 Aligned_cols=223 Identities=22% Similarity=0.252 Sum_probs=173.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCC-ceeEEEECCEeC-C----C
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR-MYGEVFVNGAKS-E----M 179 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~-~~G~I~~~G~~~-~----~ 179 (641)
+.++||+.++... .+..++++++|+++..||+-+++|+||||||-..|+|+|..+.+=. +.....+++.+. + .
T Consensus 4 LDIrnL~IE~~Ts-qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~ 82 (330)
T COG4170 4 LDIRNLTIEFKTS-QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred ccccceEEEEecC-CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHH
Confidence 5678999888643 3567899999999999999999999999999999999998765311 112334444331 1 1
Q ss_pred C----CceEEEEcCCCc--cCCCCCHHHHHHHHHHhcCCCc---------cchHHHHHHHHHHHcCCchHHhhhhcCCCC
Q 006548 180 P----YGSYGFVERETT--LIGSLTVREYLYYSALLQLPGF---------FCQRKNVVEDAIHAMSLSDYANKLIGGHCY 244 (641)
Q Consensus 180 ~----~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~---------~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~ 244 (641)
+ .+.+++++|++. +.|.-+|...|.- ..|.. ..-++.+.-++|+.+|+.+..|-.- .+
T Consensus 83 RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq----~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~---SY 155 (330)
T COG4170 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQ----NIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR---SY 155 (330)
T ss_pred hhhhhccchhhhhcCchhhcChHHHHHHHHHh----hCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH---hC
Confidence 1 135788999874 4455455433321 11211 1125667788999999988777653 48
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 245 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
|.+|.-||-|+|.||.|++..|++||.||||+.+|+.++.++.++|.++.+ +|+||+++.|+. ..+.+.||++-||.-
T Consensus 156 P~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl-~~is~W~d~i~VlYC 234 (330)
T COG4170 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDL-QMISQWADKINVLYC 234 (330)
T ss_pred cchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccH-HHHHHHhhheEEEEe
Confidence 889999999999999999999999999999999999999999999999985 478888866654 689999999999999
Q ss_pred CeEEEEeChhHHHH
Q 006548 324 GNTLFFGETLACLQ 337 (641)
Q Consensus 324 G~iv~~G~~~~~~~ 337 (641)
|+-++.++.+++++
T Consensus 235 GQ~~ESa~~e~l~~ 248 (330)
T COG4170 235 GQTVESAPSEELVT 248 (330)
T ss_pred cccccccchhHHhc
Confidence 99999999988765
No 388
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.90 E-value=9.8e-24 Score=226.69 Aligned_cols=202 Identities=21% Similarity=0.273 Sum_probs=156.9
Q ss_pred CCceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 006548 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (641)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~ 181 (641)
+++.+.++|+++.|.++ ..++++++|-+.+++.+|++||||||||||||++.|.+.|.. |.|.-.-.
T Consensus 386 p~pvi~~~nv~F~y~~~----~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~---G~vs~~~H------ 452 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDN----PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTI---GMVSRHSH------ 452 (614)
T ss_pred CCCeEEEeccccCCCCc----chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccc---cccccccc------
Confidence 45678999999998632 279999999999999999999999999999999999999875 88764322
Q ss_pred ceEEEEcCC--CccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCCCHHHHHHHHH
Q 006548 182 GSYGFVERE--TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRI 258 (641)
Q Consensus 182 ~~~~yv~Q~--~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~I 258 (641)
..+++..|+ +.+.-..++-|++.-. .+. ..+.+.+..+|..+||.. ..+. .+++||+|||+||..
T Consensus 453 ~~~~~y~Qh~~e~ldl~~s~le~~~~~----~~~--~~~~e~~r~ilgrfgLtgd~q~~------p~~~LS~Gqr~rVlF 520 (614)
T KOG0927|consen 453 NKLPRYNQHLAEQLDLDKSSLEFMMPK----FPD--EKELEEMRSILGRFGLTGDAQVV------PMSQLSDGQRRRVLF 520 (614)
T ss_pred ccchhhhhhhHhhcCcchhHHHHHHHh----ccc--cchHHHHHHHHHHhCCCcccccc------chhhcccccchhHHH
Confidence 123333333 3344456777776421 111 135677899999999984 4444 345999999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE-EEEeCh
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT-LFFGET 332 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i-v~~G~~ 332 (641)
|+.++..|.+|+|||||+|||..+...+-+.|.+. ..++|+++|+- ..|.+++++|.+..+|.+ .+.|+.
T Consensus 521 a~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 521 ARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred HHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechh-hHHHHHHHHhHhhccCceeecCccH
Confidence 99999999999999999999999999988888776 23566667765 589999999999988766 445554
No 389
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.90 E-value=8.1e-23 Score=215.47 Aligned_cols=189 Identities=20% Similarity=0.258 Sum_probs=148.8
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..++|.++++++. ..-|.--.+.+..||+++++||||-||||+.++|+|.++|++ |+ . ..-.
T Consensus 341 ~lv~y~~~~k~~g------~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPde---g~----~-----~~~~ 402 (591)
T COG1245 341 TLVEYPDLKKTYG------DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDE---GS----E-----EDLK 402 (591)
T ss_pred eeeecchheeecC------ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCC---CC----C-----ccce
Confidence 3466777776663 234566677888899999999999999999999999999986 65 1 1134
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~ 263 (641)
++|-||--.--...||++.|.-....... ..-...++++-+.|++..++.+. +|||||.|||+||.+|.
T Consensus 403 vSyKPQyI~~~~~gtV~~~l~~~~~~~~~-----~s~~~~ei~~pl~l~~i~e~~v~------~LSGGELQRvaIaa~L~ 471 (591)
T COG1245 403 VSYKPQYISPDYDGTVEDLLRSAIRSAFG-----SSYFKTEIVKPLNLEDLLERPVD------ELSGGELQRVAIAAALS 471 (591)
T ss_pred EeecceeecCCCCCcHHHHHHHhhhhhcc-----cchhHHhhcCccchHHHHhcccc------cCCchhHHHHHHHHHhc
Confidence 78888865555678999988543322111 12234678889999999998765 99999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 264 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
.++++.+||||++.||...+..+-+.+++..++ ++|.+++-|+. ..+--++||+++.+
T Consensus 472 reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi-~~~dyvsDr~ivF~ 530 (591)
T COG1245 472 READLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI-YMIDYVSDRLIVFE 530 (591)
T ss_pred cccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecce-ehhhhhhceEEEEe
Confidence 999999999999999999999999999999855 67777766654 46667789988764
No 390
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.89 E-value=2.7e-23 Score=212.83 Aligned_cols=177 Identities=16% Similarity=0.138 Sum_probs=117.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-------C-CC--CC--ceEEEEcCCCcc-CCCCCHHHHH
Q 006548 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-------S-EM--PY--GSYGFVERETTL-IGSLTVREYL 203 (641)
Q Consensus 137 e~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~-------~-~~--~~--~~~~yv~Q~~~l-~~~lTV~E~l 203 (641)
.+++|+|||||||||||++|++...+.. |++..++.. . .. .. -.+.|..|++.. .-..++.+..
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~---~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~ 99 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKS---SHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGS 99 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCc---ccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCc
Confidence 3999999999999999999999876532 555443311 0 00 01 124454444221 1011111110
Q ss_pred HHHHHhcCCCccchHHHHHHHHHHHcCCchH--------------Hhhhhc--CCCCCCCCCHHHHHHHHHHHHHHhC--
Q 006548 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDY--------------ANKLIG--GHCYMKGLPCGERRRVRIARELVMR-- 265 (641)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~--------------~~~~ig--~~~~~~~LSGGerqRv~IA~aL~~~-- 265 (641)
. ..+.... ....+.++++++.+|+... .+..+. .+..+..||||||||++||++++.+
T Consensus 100 ~---~~~ingk-~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~ 175 (247)
T cd03275 100 S---SYRINGK-VVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSY 175 (247)
T ss_pred e---EEEECCE-EecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhcc
Confidence 0 0011111 1134456788888988422 111100 0113368999999999999999975
Q ss_pred --CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 266 --PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 266 --P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
|+++||||||+|||+..+..+.+.|++++++|.++|+++|++ ++.+.||++++|.
T Consensus 176 ~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~ 232 (247)
T cd03275 176 QPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVY 232 (247)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEE
Confidence 899999999999999999999999999987789999998884 4678999999996
No 391
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=1.5e-22 Score=200.39 Aligned_cols=168 Identities=20% Similarity=0.161 Sum_probs=117.8
Q ss_pred eeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe----C--CCCCceEEEEcCCCccCCCCCH
Q 006548 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK----S--EMPYGSYGFVERETTLIGSLTV 199 (641)
Q Consensus 126 L~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~----~--~~~~~~~~yv~Q~~~l~~~lTV 199 (641)
++++++.+.+| +.+|+||||||||||+.+|........ . ....|.. . ......+..++|+..+.++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~---~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~--- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKA---S-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN--- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCc---c-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC---
Confidence 35666777777 889999999999999999985432211 0 0001210 0 1122456777776655541
Q ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH----HhCCcEEEEeCCC
Q 006548 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL----VMRPHVLFIDEPL 275 (641)
Q Consensus 200 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL----~~~P~iLlLDEPt 275 (641)
+.. ...++.++++++. .+..++ .++.||+|||||++||++| +.+|++++|||||
T Consensus 84 ------------~~~-~~~~~~~~~~l~~---~~~~~~------~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~ 141 (198)
T cd03276 84 ------------PLC-VLSQDMARSFLTS---NKAAVR------DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFD 141 (198)
T ss_pred ------------cCC-HHHHHHHHHHhcc---ccccCC------cccccChhHHHHHHHHHHHHHhcccCCCEEEecCcc
Confidence 000 0123456677766 444444 4569999999999999999 5899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc--C-CEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 006548 276 YHLDSVSALLMMVTLKKLAST--G-CTLLFTINQSSTEVFGLFDRICLLSNGN 325 (641)
Q Consensus 276 sgLD~~~~~~i~~~L~~l~~~--g-~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (641)
+|||..++..+.+.|+++.++ + +||++++|++ +++.++ |+|.+|..|+
T Consensus 142 ~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~-~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 142 VFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDI-SGLASS-DDVKVFRMKD 192 (198)
T ss_pred cccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc-cccccc-cceeEEEecC
Confidence 999999999999999998643 3 5788877776 466664 9999998754
No 392
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.88 E-value=5.8e-22 Score=214.54 Aligned_cols=205 Identities=16% Similarity=0.232 Sum_probs=163.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~ 183 (641)
..+++++|++.-++ .+..+++|+|+.|..|+-+.|+||||||||+|||+|+|+.|..+ |++.--... ..+.
T Consensus 432 n~i~~e~v~l~tPt---~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~---G~l~k~~~~---~~~~ 502 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPT---NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTG---GKLTKPTDG---GPKD 502 (659)
T ss_pred ceEEeeeeeecCCC---CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCC---CeEEecccC---CCCc
Confidence 46999999987653 25578899999999999999999999999999999999998654 888754322 1255
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCC-----CCCCCCCHHHHHHHHH
Q 006548 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERRRVRI 258 (641)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerqRv~I 258 (641)
+-|+||.|.+- ..|.||-+.|+..--.+......++++.+.|+.++|.++.++.-|-+ ++...||+||+||++.
T Consensus 503 lfflPQrPYmt-~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ 581 (659)
T KOG0060|consen 503 LFFLPQRPYMT-LGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAF 581 (659)
T ss_pred eEEecCCCCcc-ccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHH
Confidence 89999999754 55999999886322111111225678999999999999988754422 2446699999999999
Q ss_pred HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 259 A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
||.+.++|++-||||-||++|......+.+.+++ .|.|.|-+.|..+ ..++-|.++-|+.
T Consensus 582 ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 582 ARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred HHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHH--HHhhhhEEEEecC
Confidence 9999999999999999999999999998888776 5889888888764 5677788888874
No 393
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.86 E-value=8.8e-21 Score=181.92 Aligned_cols=210 Identities=20% Similarity=0.264 Sum_probs=160.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~---- 179 (641)
..+++.++.|+|+. ..+++-|+|+.++.|..+.++|.||||||||||+|+|-.-... |.|.++|.+.-.
T Consensus 12 ~aievsgl~f~y~~----~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~---~~v~VlgrsaFhDt~l 84 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKV----SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGG---GVVQVLGRSAFHDTSL 84 (291)
T ss_pred ceEEEeccEEeccc----CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccC---CeEEEcCcCccccccc
Confidence 46899999999963 4589999999999999999999999999999999999765543 899999975311
Q ss_pred -CCceEEEEcC----------CCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCC
Q 006548 180 -PYGSYGFVER----------ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248 (641)
Q Consensus 180 -~~~~~~yv~Q----------~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~L 248 (641)
......|+-- +-.+...+++.+-| |+. ... .-++-+++++.+.++- .++.+.+
T Consensus 85 ~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mi-fgV----~g~---dp~Rre~LI~iLDIdl--------~WRmHkv 148 (291)
T KOG2355|consen 85 ESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGV----GGD---DPERREKLIDILDIDL--------RWRMHKV 148 (291)
T ss_pred cccCceeEecccccccccccccccccccccHHHHH-hhc----cCC---ChhHhhhhhhheeccc--------eEEEeec
Confidence 0112333321 22233456666544 321 111 1244566666666531 2456789
Q ss_pred CHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 006548 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (641)
Q Consensus 249 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (641)
|-|||+||.|++-|+..=++|+|||-|--||..++..+++.+++-.++ |.||+..+|-- +-......+++.+++|+++
T Consensus 149 SDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF-DGLe~Wpthl~yi~~Gkl~ 227 (291)
T KOG2355|consen 149 SDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF-DGLETWPTHLVYIKSGKLV 227 (291)
T ss_pred cccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec-cchhhcchhEEEecCCeee
Confidence 999999999999999999999999999999999999999999998854 89999988875 4678889999999999998
Q ss_pred EEeChhHHHH
Q 006548 328 FFGETLACLQ 337 (641)
Q Consensus 328 ~~G~~~~~~~ 337 (641)
-.-+.+++.+
T Consensus 228 ~~l~~~~i~e 237 (291)
T KOG2355|consen 228 DNLKYQKIKE 237 (291)
T ss_pred eccccchhhh
Confidence 7655544433
No 394
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.6e-21 Score=208.72 Aligned_cols=202 Identities=21% Similarity=0.219 Sum_probs=138.9
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 006548 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (641)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~ 182 (641)
+..|...++++.| +.+.+|++-++++..|...+|+|+||+|||||||+|+. |.|..-..+ ...+
T Consensus 78 ~~Di~~~~fdLa~-----G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~~f~ve--qE~~ 141 (582)
T KOG0062|consen 78 SKDIHIDNFDLAY-----GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVSGFHVE--QEVR 141 (582)
T ss_pred ccceeeeeeeeee-----cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcCccCch--hhee
Confidence 3468899999988 45689999999999999999999999999999999986 223222211 0000
Q ss_pred eEEEEcCC-CccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 006548 183 SYGFVERE-TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 183 ~~~yv~Q~-~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (641)
-.+++-. +.+....++.+-+.-...+... ....+...++|..+|..+ ...+ ..+.||||-|-|+++||
T Consensus 142 -g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~---~~l~ei~~~~L~glGFt~emq~~------pt~slSGGWrMrlaLAR 211 (582)
T KOG0062|consen 142 -GDDTEALQSVLESDTERLDFLAEEKELLAG---LTLEEIYDKILAGLGFTPEMQLQ------PTKSLSGGWRMRLALAR 211 (582)
T ss_pred -ccchHHHhhhhhccHHHHHHHHhhhhhhcc---chHHHHHHHHHHhCCCCHHHHhc------cccccCcchhhHHHHHH
Confidence 1122211 1222233333333211111100 012333444888999864 4444 34599999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE-EEEeChhH
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT-LFFGETLA 334 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i-v~~G~~~~ 334 (641)
||..+|+||+|||||+.||..+..=+.+.|+.+. .|+|+++|+ +...-..|..|+.+++-++ .|.|+-++
T Consensus 212 Alf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~---~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~ 282 (582)
T KOG0062|consen 212 ALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK---ITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQ 282 (582)
T ss_pred HHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC---ceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHH
Confidence 9999999999999999999999988888887763 688886665 5688888988888887665 34455443
No 395
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.85 E-value=7.3e-23 Score=201.76 Aligned_cols=203 Identities=25% Similarity=0.370 Sum_probs=186.1
Q ss_pred HHHHHHHHHHHHHHhhChHHH-HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHhhH
Q 006548 433 TRVAVLTWRSLLIMSREWKYY-WLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGV-PALMKEI 510 (641)
Q Consensus 433 ~Q~~~l~~R~~~~~~Rd~~~~-~~r~~~~~~~~l~~G~~f~~l~~~~~~~~~r~g~lff~~~~~~~~~~~~v-~~~~~er 510 (641)
+|++.+++|+++..+|||.+. ..+++..++.++++|.+|.++++..+++ ++.|.+++.+.+..+...... .....||
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 8999999999999999999999555555 788888888888876665554 7788899
Q ss_pred hHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 006548 511 KTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKD 590 (641)
Q Consensus 511 ~vf~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~l~l~l~~~~~~sl~~~i~~~~~~ 590 (641)
..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +|+.+++.+.++.+++.++|.+++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999988 77888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHhhhc
Q 006548 591 VYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 591 ~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~~ 640 (641)
...+..+.+.+..++++++|.+.+.+.+|+ |..|+.|+||++|++|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~--~~~~i~~~~P~~~~~~~~ 205 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPS--WLRWISYLNPLTYAVEAL 205 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChH--HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999984 666799999999999986
No 396
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=9.9e-21 Score=197.97 Aligned_cols=193 Identities=23% Similarity=0.306 Sum_probs=149.9
Q ss_pred CCceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 006548 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (641)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~ 181 (641)
.++.+-++||+|.|+ +.++++++++|-|.-...+||+||||.||||||++|.|-+.|+. |+..-| .+
T Consensus 583 ~PPvLGlH~VtFgy~----gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~---GE~RKn------hr 649 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP----GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPND---GELRKN------HR 649 (807)
T ss_pred CCCeeecccccccCC----CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCc---chhhcc------ce
Confidence 345789999999996 35679999999999999999999999999999999999999875 765433 22
Q ss_pred ceEEEEcCC--CccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 182 GSYGFVERE--TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 182 ~~~~yv~Q~--~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
-+||+..|+ ..|...-|..|.|.-. +.+| .+..+..|-.+||...+++. .+..||||||-||++|
T Consensus 650 L~iG~FdQh~~E~L~~Eetp~EyLqr~--FNlp------yq~ARK~LG~fGL~sHAHTi-----kikdLSGGQKaRVala 716 (807)
T KOG0066|consen 650 LRIGWFDQHANEALNGEETPVEYLQRK--FNLP------YQEARKQLGTFGLASHAHTI-----KIKDLSGGQKARVALA 716 (807)
T ss_pred eeeechhhhhHHhhccccCHHHHHHHh--cCCC------hHHHHHHhhhhhhhhccceE-----eeeecCCcchHHHHHH
Confidence 368888885 3455566777776432 1222 24466788999998877764 4679999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (641)
.--+..|+||||||||++||..+...+.+.|++.. | .||+++|+.. .+.+.--.++|+.+-
T Consensus 717 eLal~~PDvlILDEPTNNLDIESIDALaEAIney~--G-gVi~VsHDeR-Li~eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 717 ELALGGPDVLILDEPTNNLDIESIDALAEAINEYN--G-GVIMVSHDER-LIVETDCNLWVVENQ 777 (807)
T ss_pred HHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc--C-cEEEEecccc-eeeecCceEEEEccC
Confidence 99999999999999999999999999999888863 3 4666678764 444444456666543
No 397
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.84 E-value=1.1e-20 Score=187.53 Aligned_cols=146 Identities=17% Similarity=0.140 Sum_probs=108.5
Q ss_pred eeceeeEEeCCc-EEEEECCCCCcHHHHHHHHH--------cCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCC
Q 006548 126 VKSSNGYALPGT-MTVIMGPAKSGKSTLLRAIA--------GRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGS 196 (641)
Q Consensus 126 L~~vs~~i~~Ge-~~aIiGpsGsGKSTLl~~La--------G~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~ 196 (641)
.-++|+++.+|+ +++|+||||||||||||+|+ |..-|.. . ...++|..|...
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~---~------------~~~~~~~~~~~~---- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAA---E------------GSSLPVFENIFA---- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccc---c------------cccCcCccEEEE----
Confidence 456788888995 89999999999999999998 4322210 0 011223222211
Q ss_pred CCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCC
Q 006548 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (641)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPts 276 (641)
.++..+..+. ....+|+||||++.|++++ .+|+++++|||++
T Consensus 78 -------------------------------~lg~~~~l~~------~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~ 119 (200)
T cd03280 78 -------------------------------DIGDEQSIEQ------SLSTFSSHMKNIARILQHA-DPDSLVLLDELGS 119 (200)
T ss_pred -------------------------------ecCchhhhhc------CcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCC
Confidence 1111112222 2348999999999999884 8999999999999
Q ss_pred CCCHHHHHHHH-HHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 006548 277 HLDSVSALLMM-VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (641)
Q Consensus 277 gLD~~~~~~i~-~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (641)
|||+.....+. ..++.+.+.|.++|+++|++ ++.++||++.+|++|++++++
T Consensus 120 glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 120 GTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 99999999996 47888877789999988863 678999999999999998874
No 398
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=3e-20 Score=199.03 Aligned_cols=199 Identities=20% Similarity=0.236 Sum_probs=156.1
Q ss_pred CCceEEEEeEEEEEeccccccc-ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC
Q 006548 102 AGASVVWKDLTVTIKGKRRYSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180 (641)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~ 180 (641)
.++.+.+.+|++.|.. +. +++.+++..++.-..++++|+||+||||++|++.|-..|.. |-+.+++
T Consensus 359 ~~p~l~i~~V~f~y~p----~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~r---gi~~~~~------ 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTP----SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTR---GIVGRHP------ 425 (582)
T ss_pred CCCeeEEEeeeccCCC----cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCccc---ceeeecc------
Confidence 4567999999988853 22 79999999999999999999999999999999999777654 7776654
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIA 259 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (641)
+.+++|-.|...=+-.+.|.+.-... .. .|+. .++.+++-+..+||+ +.+... +.+||||||=||++|
T Consensus 426 r~ri~~f~Qhhvd~l~~~v~~vd~~~-~~-~pG~---~~ee~r~hl~~~Gl~g~la~~s------i~~LSGGQKsrvafA 494 (582)
T KOG0062|consen 426 RLRIKYFAQHHVDFLDKNVNAVDFME-KS-FPGK---TEEEIRRHLGSFGLSGELALQS------IASLSGGQKSRVAFA 494 (582)
T ss_pred cceecchhHhhhhHHHHHhHHHHHHH-Hh-CCCC---CHHHHHHHHHhcCCCchhhhcc------ccccCCcchhHHHHH
Confidence 35688888865433344444432222 22 2222 456688899999996 455543 458999999999999
Q ss_pred HHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 006548 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (641)
Q Consensus 260 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (641)
.....+|.+|+|||||+.||-.+-..+.+.|+.. +| .||+++|+. +.+...|+.+++.++|++.-
T Consensus 495 ~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~G-GVv~VSHd~-~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 495 ACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NG-GVVLVSHDE-EFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc--CC-cEEEEECcH-HHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999999999999998887 34 456656664 68999999999999999864
No 399
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=2.5e-20 Score=186.55 Aligned_cols=82 Identities=16% Similarity=0.126 Sum_probs=68.9
Q ss_pred CCCCCCHHHHHHHHHHHHH----HhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C-CEEEEEEeCChHHHHhcCC-
Q 006548 244 YMKGLPCGERRRVRIAREL----VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-G-CTLLFTINQSSTEVFGLFD- 316 (641)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL----~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g-~tvi~t~h~~~~~i~~~~D- 316 (641)
.+.+||||||||+.++++| +.+|+++++||||+|||+.++..+++.|++++++ | .++|+++||.. ++.+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccCc
Confidence 4569999999999877654 4799999999999999999999999999999866 5 57888888864 4556666
Q ss_pred -EEEEEeCCeE
Q 006548 317 -RICLLSNGNT 326 (641)
Q Consensus 317 -~v~vL~~G~i 326 (641)
+|++|++|+-
T Consensus 202 ~~v~~l~~g~~ 212 (213)
T cd03277 202 MTVLCVYNGPH 212 (213)
T ss_pred eEEEEEecCcc
Confidence 7888888873
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.81 E-value=7.8e-20 Score=193.11 Aligned_cols=170 Identities=24% Similarity=0.300 Sum_probs=128.0
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCC-------CCCceEEEEcCC----
Q 006548 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSE-------MPYGSYGFVERE---- 190 (641)
Q Consensus 133 i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~-----------~~G~~~~-------~~~~~~~yv~Q~---- 190 (641)
.++|++++|+|+||-||||-+|+|+|.+.|+- |+-. +.|...+ ....++..-+|-
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNL---G~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~i 173 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNL---GRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLI 173 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCC---CCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHH
Confidence 34899999999999999999999999998874 4321 1111000 000112222232
Q ss_pred CccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEE
Q 006548 191 TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLF 270 (641)
Q Consensus 191 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLl 270 (641)
+..+ .-||.|.|.-. ..+...+++++.++|.+..|+-+. +|||||-||++||.+++++.++++
T Consensus 174 Pk~~-KG~v~elLk~~----------de~g~~devve~l~L~nvl~r~v~------~LSGGELQr~aIaa~l~rdADvY~ 236 (591)
T COG1245 174 PKVV-KGKVGELLKKV----------DERGKFDEVVERLGLENVLDRDVS------ELSGGELQRVAIAAALLRDADVYF 236 (591)
T ss_pred HHHh-cchHHHHHHhh----------hhcCcHHHHHHHhcchhhhhhhhh------hcCchHHHHHHHHHHHhccCCEEE
Confidence 2222 23666665311 122357899999999999999776 999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 271 IDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 271 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
+|||||-||...+..+.+.+++|++.+++||++-|+. .-+--++|-|.++..
T Consensus 237 FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDL-avLD~lsD~vhI~YG 288 (591)
T COG1245 237 FDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDL-AVLDYLSDFVHILYG 288 (591)
T ss_pred EcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechH-HHHHHhhheeEEEec
Confidence 9999999999999999999999998899999976664 456667999998864
No 401
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.80 E-value=5.1e-19 Score=184.87 Aligned_cols=186 Identities=27% Similarity=0.356 Sum_probs=138.3
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-----CCceeEEEECCEeCCCCCceEEEEcCCC-ccCC
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-----ARMYGEVFVNGAKSEMPYGSYGFVERET-TLIG 195 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~-----~~~~G~I~~~G~~~~~~~~~~~yv~Q~~-~l~~ 195 (641)
...+|+|+|+.++||++++|+|+|||||||||++|+|..... ...+|.|.+--.. ..+.+|-+. .-|.
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt------~~a~iPge~Ep~f~ 468 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT------VSALIPGEYEPEFG 468 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc------hhhccCcccccccC
Confidence 457999999999999999999999999999999999974321 0124666553211 122333321 1223
Q ss_pred CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCC
Q 006548 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPL 275 (641)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPt 275 (641)
.-|+.|.+.- .++ +-....++|...||.+..-. -....+||-|||.|+.||.++..+|.+++.||-.
T Consensus 469 ~~tilehl~s-----~tG----D~~~AveILnraGlsDAvly----Rr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~ 535 (593)
T COG2401 469 EVTILEHLRS-----KTG----DLNAAVEILNRAGLSDAVLY----RRKFSELSTGQKERAKLAKLLAERPNVLLIDEFA 535 (593)
T ss_pred chhHHHHHhh-----ccC----chhHHHHHHHhhccchhhhh----hccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhh
Confidence 4566666621 111 22346789999999753322 1245699999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhc-CCEEEEEeCCeEE
Q 006548 276 YHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGL-FDRICLLSNGNTL 327 (641)
Q Consensus 276 sgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv 327 (641)
|.||..++..+.+-|.+++++ |.|+++++|+|. .+-++ -|+++++.-|++.
T Consensus 536 AhLD~~TA~rVArkiselaRe~giTlivvThrpE-v~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 536 AHLDELTAVRVARKISELAREAGITLIVVTHRPE-VGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHhccCCceeEEeeccccc
Confidence 999999999999999999955 999999999984 56666 7888888766553
No 402
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.80 E-value=8.1e-19 Score=170.87 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHHHHH----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 248 LPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 248 LSGGerqRv~IA~aL~----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
||||||||++||++|+ .+|+++++|||+++||+..+..+.+.|++++++|.++|+++|++. ....+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999997 699999999999999999999999999999877899999999863 4568999999974
No 403
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.80 E-value=2.3e-19 Score=191.95 Aligned_cols=186 Identities=20% Similarity=0.250 Sum_probs=142.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~ 184 (641)
.+.++|+-+-.+ ....++..++|.+++|-.+.|+||||||||+|+++|.|+.|-.. |...+ .+..++
T Consensus 481 gI~lenIpvItP----~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~---g~L~~------P~~~~m 547 (728)
T KOG0064|consen 481 GIILENIPVITP----AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYN---GLLSI------PRPNNI 547 (728)
T ss_pred ceEEecCceecc----CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccC---Ceeec------CCCcce
Confidence 478888876554 34568999999999999999999999999999999999998642 54432 233468
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCC----CCCCCCHHHHHHHHHHH
Q 006548 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC----YMKGLPCGERRRVRIAR 260 (641)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~----~~~~LSGGerqRv~IA~ 260 (641)
-|+||.+.+- ..|.+|.+.|+-...--....-.++..+.+|+.+.|++.+.+-.| -+ +..-||||||||+++||
T Consensus 548 FYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g-~da~~dWkd~LsgGekQR~~mAR 625 (728)
T KOG0064|consen 548 FYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGG-WDAVRDWKDVLSGGEKQRMGMAR 625 (728)
T ss_pred EeccCCCccC-cCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccC-hhhhccHHhhccchHHHHHHHHH
Confidence 9999998765 567888775531100000000134567889999999988877543 22 33459999999999999
Q ss_pred HHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (641)
.+-++|+.-+|||-||+..+.....+.+..++ -|.+.+-++|+|+
T Consensus 626 m~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrps 670 (728)
T KOG0064|consen 626 MFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPS 670 (728)
T ss_pred HHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCcc
Confidence 99999999999999999999888888887766 4889999999996
No 404
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.77 E-value=6.3e-19 Score=174.65 Aligned_cols=147 Identities=18% Similarity=0.140 Sum_probs=102.4
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHH
Q 006548 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (641)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (641)
.+++|+++. +|++++|+||||||||||+|+|+|...- ...|.+... + .+++|.+.+++.+|+.|++
T Consensus 15 ~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~l--------~~~G~~v~a--~--~~~~q~~~l~~~~~~~d~l 80 (199)
T cd03283 15 RVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVIL--------AQAGAPVCA--S--SFELPPVKIFTSIRVSDDL 80 (199)
T ss_pred eecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHHH--------HHcCCEEec--C--ccCcccceEEEeccchhcc
Confidence 466776655 4799999999999999999999985421 112332211 1 2556777889999999999
Q ss_pred HHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHH
Q 006548 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (641)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~ 283 (641)
.++.. ......+++.++++.+++ .+|+++++||||+|||+...
T Consensus 81 ~~~~s-----~~~~e~~~~~~iL~~~~~--------------------------------~~p~llllDEp~~glD~~~~ 123 (199)
T cd03283 81 RDGIS-----YFYAELRRLKEIVEKAKK--------------------------------GEPVLFLLDEIFKGTNSRER 123 (199)
T ss_pred ccccC-----hHHHHHHHHHHHHHhccC--------------------------------CCCeEEEEecccCCCCHHHH
Confidence 76421 111122345555555431 69999999999999999999
Q ss_pred HHHH-HHHHHHHHcCCEEEEEEeCChHHHHhc--CCEEEEEe
Q 006548 284 LLMM-VTLKKLASTGCTLLFTINQSSTEVFGL--FDRICLLS 322 (641)
Q Consensus 284 ~~i~-~~L~~l~~~g~tvi~t~h~~~~~i~~~--~D~v~vL~ 322 (641)
..+. ..++++.+.|.++|+++|++. .+..+ .++|-.++
T Consensus 124 ~~l~~~ll~~l~~~~~tiiivTH~~~-~~~~~~~~~~v~~~~ 164 (199)
T cd03283 124 QAASAAVLKFLKNKNTIGIISTHDLE-LADLLDLDSAVRNYH 164 (199)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCcHH-HHHhhhcCCCeEEEE
Confidence 8775 478888877899999998874 45444 44555443
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.76 E-value=1.7e-17 Score=203.77 Aligned_cols=128 Identities=18% Similarity=0.252 Sum_probs=101.8
Q ss_pred CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhC---CcEEEEe
Q 006548 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR---PHVLFID 272 (641)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~---P~iLlLD 272 (641)
.|||.|.+.|... . .+-.+.-+.|+.+||.-+.= ......|||||.||+-||..|..+ +.+++||
T Consensus 1660 ~mtv~ea~~~F~~------~-~~i~~~L~~L~~vGLgYl~L-----Gq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilD 1727 (1809)
T PRK00635 1660 QTPIEEVAETFPF------L-KKIQKPLQALIDNGLGYLPL-----GQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLD 1727 (1809)
T ss_pred cCCHHHHHHHhhc------c-HHHHHHHHHHHHcCCCeeeC-----CCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEc
Confidence 4677777665421 0 12234456788888864421 224458999999999999999876 7899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe------CCeEEEEeChhHHHH
Q 006548 273 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS------NGNTLFFGETLACLQ 337 (641)
Q Consensus 273 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~------~G~iv~~G~~~~~~~ 337 (641)
|||+||++.....+++.|++|.+.|.|||++-|++ ++.+.||.|+-|- .|+||+.|+|+++.+
T Consensus 1728 EPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1728 EIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 99999999999999999999999999999987776 4667799999983 479999999999865
No 406
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=4.9e-18 Score=176.82 Aligned_cols=76 Identities=20% Similarity=0.161 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHHHh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 247 GLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 247 ~LSGGerqRv~IA~aL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
.||||||||+++|++++. +|+++++||||++||+.++..+.+.|+++.+ +.|+|+++|++. +...||++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999997664 9999999999999999999999999999864 689999999874 568999999998
Q ss_pred CCe
Q 006548 323 NGN 325 (641)
Q Consensus 323 ~G~ 325 (641)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 763
No 407
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.75 E-value=2.3e-17 Score=185.00 Aligned_cols=128 Identities=22% Similarity=0.270 Sum_probs=100.8
Q ss_pred CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCC---cEEEEe
Q 006548 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRP---HVLFID 272 (641)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P---~iLlLD 272 (641)
.|||.|...|.... ..-.+.-+.|..+||.-.. . ......|||||.|||-+|.+|..+. -+.+||
T Consensus 783 ~MTveEA~~FF~~~-------p~I~rkLqtL~dVGLgYi~---L--GQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLD 850 (935)
T COG0178 783 DMTVEEALEFFEAI-------PKIARKLQTLVDVGLGYIK---L--GQPATTLSGGEAQRVKLAKELSKRSTGKTLYILD 850 (935)
T ss_pred hccHHHHHHHHhcc-------hHHHHHHHHHHHcCcceEe---c--CCccccccchHHHHHHHHHHHhhccCCCeEEEeC
Confidence 36666666654311 1122344566677775322 1 2244589999999999999999887 899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHHHH
Q 006548 273 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (641)
Q Consensus 273 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (641)
|||+||-.....++++.|.+|.+.|-|||++-|.. ++.+.||.|+=| ..|+||+.|+|+++.+
T Consensus 851 EPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 851 EPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 99999999999999999999999999999966654 688999999998 3589999999999875
No 408
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.75 E-value=6e-18 Score=162.28 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHHHHHHh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 247 GLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 247 ~LSGGerqRv~IA~aL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
+||+||+||++||++|.. +|+++|+|||++|+|+.....+.+.+.++.++|.++|+++|++ ++.+.+|+++.|+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~--~~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP--ELAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhhhhEEEEE
Confidence 599999999999999997 7899999999999999999999999999876688999988887 3456799999986
Q ss_pred C
Q 006548 323 N 323 (641)
Q Consensus 323 ~ 323 (641)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
No 409
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.75 E-value=3.8e-18 Score=171.87 Aligned_cols=152 Identities=21% Similarity=0.237 Sum_probs=112.7
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE-EEcCCCccCCCCCHHH
Q 006548 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG-FVERETTLIGSLTVRE 201 (641)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~-yv~Q~~~l~~~lTV~E 201 (641)
+.+.+|+++...+|++++|.||||+|||||++.++-.. + ..++| |||.+...++
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~-----------~--------la~~g~~vpa~~~~~~------ 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV-----------L--------MAQIGCFVPCDSADIP------ 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH-----------H--------HHHhCCCcCcccEEEe------
Confidence 45788899999899999999999999999999987210 0 01122 3333321111
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHH--HhCCcEEEEeCC---CC
Q 006548 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL--VMRPHVLFIDEP---LY 276 (641)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL--~~~P~iLlLDEP---ts 276 (641)
.++++++.+++.+... +++|.|+++++.+++++ +.+|+++||||| |+
T Consensus 72 -------------------~~~~il~~~~l~d~~~---------~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~ 123 (222)
T cd03285 72 -------------------IVDCILARVGASDSQL---------KGVSTFMAEMLETAAILKSATENSLIIIDELGRGTS 123 (222)
T ss_pred -------------------ccceeEeeeccccchh---------cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCC
Confidence 1234455556553332 38999999999999999 899999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 006548 277 HLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (641)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (641)
+||+..... ..++.+.+ .|.++|+++|. .++.++||++..+++|++...+.
T Consensus 124 ~lD~~~~~~--~il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 124 TYDGFGLAW--AIAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred hHHHHHHHH--HHHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999888754 33455554 48899998885 57889999999999999988764
No 410
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.73 E-value=2e-17 Score=195.30 Aligned_cols=134 Identities=20% Similarity=0.245 Sum_probs=108.9
Q ss_pred CCCCHHHHHHHHHHhcCCCcc--------chHHHHHHHHHHHcCCchH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHHhC
Q 006548 195 GSLTVREYLYYSALLQLPGFF--------CQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (641)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~--------~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (641)
..+||.|.+.|...+..+... .+..++++ .|+.+||.++ .++.+ ..|||||||||.||++|..+
T Consensus 435 ~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~------~~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 435 SELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSA------GTLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred hcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCch------hhCCHHHHHHHHHHHHHhhC
Confidence 468999999885544332210 01233443 6788888765 56655 49999999999999999999
Q ss_pred C--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHHHH
Q 006548 266 P--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (641)
Q Consensus 266 P--~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (641)
| ++++|||||+|||+..+..+++.|++++++|.|||+++|++. ++ ..||+|++| ++|++++.|+++++..
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 7 999999999999999999999999999988999999988874 55 469999999 9999999999988753
No 411
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.72 E-value=4.6e-18 Score=168.89 Aligned_cols=153 Identities=20% Similarity=0.201 Sum_probs=102.1
Q ss_pred eeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHH
Q 006548 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSAL 208 (641)
Q Consensus 130 s~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~-~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~ 208 (641)
++.+.+|++++|+|||||||||||++|++..- .. .|... ......+++..| ++..+...+++
T Consensus 23 ~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~---~g~~~------~~~~~~i~~~dq---i~~~~~~~d~i----- 85 (202)
T cd03243 23 DINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQ---IGCFV------PAESASIPLVDR---IFTRIGAEDSI----- 85 (202)
T ss_pred eEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHH---cCCCc------cccccccCCcCE---EEEEecCcccc-----
Confidence 44455899999999999999999999995421 11 12111 001112333222 11111111111
Q ss_pred hcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHH
Q 006548 209 LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV 288 (641)
Q Consensus 209 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~ 288 (641)
+. ....++++++ |+..+.+++.+|+++|+||||+|||+.....+..
T Consensus 86 ---------------------------~~------~~s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~ 131 (202)
T cd03243 86 ---------------------------SD------GRSTFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAY 131 (202)
T ss_pred ---------------------------cC------CceeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence 01 1225565555 4666678889999999999999999998888765
Q ss_pred -HHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 006548 289 -TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 289 -~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
+++.+.+.+.++|+++|++ ++.+.+|++..++.|++...++..+.
T Consensus 132 ~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 132 AVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCee
Confidence 5677777788999988864 56778999999999999988875443
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=5.3e-17 Score=191.46 Aligned_cols=133 Identities=20% Similarity=0.237 Sum_probs=105.4
Q ss_pred CCCCHHHHHHHHHHhcCCCccch--------HHHHHHHHHHHcCCchH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHHhC
Q 006548 195 GSLTVREYLYYSALLQLPGFFCQ--------RKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (641)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~--------~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (641)
-.|||.|.+.|...+........ ..+++ +.+..+||... .++. +.+|||||+|||.||++|+.+
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~------~~tLSGGE~QRv~LA~aL~~~ 505 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRA------AGTLSGGEAQRIRLATQIGSG 505 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCC------cCcCCHHHHHHHHHHHHHhhC
Confidence 36899999887655433211000 11122 33666777654 4554 459999999999999999998
Q ss_pred C--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHHH
Q 006548 266 P--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACL 336 (641)
Q Consensus 266 P--~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~ 336 (641)
| +++||||||+|||+.....+++.|++++++|.|||+++|++. .+ ..||+|++| ++|++++.|+++++.
T Consensus 506 ~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 506 LTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 6 899999999999999999999999999988999999888864 55 589999999 899999999998874
No 413
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=3.2e-18 Score=179.32 Aligned_cols=206 Identities=22% Similarity=0.288 Sum_probs=143.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC---CCCCCCceeEEEECCEeCC--
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR---LPHSARMYGEVFVNGAKSE-- 178 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~---~~~~~~~~G~I~~~G~~~~-- 178 (641)
+.|.++|.+.+- .++.++.|-|+.|-.|..++++||||-||||||+.|+.+ +||. =+|++..+.+.
T Consensus 263 ~DIKiEnF~ISA-----~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn----IDvLlCEQEvvad 333 (807)
T KOG0066|consen 263 MDIKIENFDISA-----QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN----IDVLLCEQEVVAD 333 (807)
T ss_pred ccceeeeeeeec-----ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC----CceEeeeeeeeec
Confidence 457778777665 356789999999999999999999999999999999987 4554 23444433210
Q ss_pred ----------CCCceEEEEcCCCc-----cCCCCCHHHHHHHHH-HhcCCCccchHHHHHHHHHHHcCCch-HHhhhhcC
Q 006548 179 ----------MPYGSYGFVERETT-----LIGSLTVREYLYYSA-LLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGG 241 (641)
Q Consensus 179 ----------~~~~~~~yv~Q~~~-----l~~~lTV~E~l~~~~-~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~ 241 (641)
...++...+..++. --...|+.|-+.-.+ .++.-+. ...+.+.+.+|.-+|.+. ..++
T Consensus 334 ~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA-~sAEarARRILAGLGFskEMQ~r---- 408 (807)
T KOG0066|consen 334 STSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGA-DSAEARARRILAGLGFSKEMQER---- 408 (807)
T ss_pred CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcc-ccchhHHHHHHhhcCCChhHhcC----
Confidence 00011111111111 112345555553211 1221111 113456777888888864 3444
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 006548 242 HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (641)
Q Consensus 242 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (641)
+...+|||-|-||++||||..+|-+|.|||||++||..+..-+-+.|+.+.+ |.++++|+. ..+-..|..|+.|
T Consensus 409 --Pt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkK---TLLIVSHDQ-gFLD~VCtdIIHL 482 (807)
T KOG0066|consen 409 --PTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKK---TLLIVSHDQ-GFLDSVCTDIIHL 482 (807)
T ss_pred --CccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhh---eeEEEeccc-chHHHHHHHHhhh
Confidence 2348999999999999999999999999999999999988888888888864 788877776 5788999999999
Q ss_pred eCCeEEEE
Q 006548 322 SNGNTLFF 329 (641)
Q Consensus 322 ~~G~iv~~ 329 (641)
++-++-|+
T Consensus 483 D~qkLhyY 490 (807)
T KOG0066|consen 483 DNQKLHYY 490 (807)
T ss_pred hhhhhhhh
Confidence 98887554
No 414
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=7.3e-16 Score=160.02 Aligned_cols=77 Identities=18% Similarity=0.213 Sum_probs=63.9
Q ss_pred CCCCCHHHHHHHHHHHHHH---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcC
Q 006548 245 MKGLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 315 (641)
Q Consensus 245 ~~~LSGGerqRv~IA~aL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~ 315 (641)
..-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++. .+++++||.. .+..+|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~~-~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDLA-DFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCch-hccchh
Confidence 3458999999999999985 7999999999999999999999999998753 3455566653 566677
Q ss_pred ---CEEEEEeCCeE
Q 006548 316 ---DRICLLSNGNT 326 (641)
Q Consensus 316 ---D~v~vL~~G~i 326 (641)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999986
No 415
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.64 E-value=7.3e-16 Score=154.71 Aligned_cols=156 Identities=18% Similarity=0.145 Sum_probs=106.3
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHH
Q 006548 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (641)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (641)
.+.+|+++..++ ++++|+||||||||||||.+++..-. |+ .|.........++++.| +++.+++.|++
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l-----~~---~g~~vp~~~~~i~~~~~---i~~~~~~~~~l 86 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL-----AQ---IGSFVPASKAEIGVVDR---IFTRIGASDDL 86 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH-----hc---cCCeeccccceecceee---EeccCCchhhh
Confidence 467778877776 89999999999999999999875321 21 12222222345666654 66777887777
Q ss_pred HHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCH--HHHHHHHHHHHHHhCCcEEEEeCC---CCCC
Q 006548 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC--GERRRVRIARELVMRPHVLFIDEP---LYHL 278 (641)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSG--GerqRv~IA~aL~~~P~iLlLDEP---tsgL 278 (641)
..+ .|. .|+++++-+...+.+|++++|||| |++|
T Consensus 87 s~g-----------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~l 125 (216)
T cd03284 87 AGG-----------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTY 125 (216)
T ss_pred ccC-----------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChH
Confidence 431 111 123333333344579999999999 8888
Q ss_pred CHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 279 DSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 279 D~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
|.... ....++.+.+. +.++|+++|+. ++.+++|++..+.+|++...+..+++.
T Consensus 126 D~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 126 DGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred HHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 87542 34455556655 88999988884 678889998888899988877766543
No 416
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.62 E-value=1.3e-15 Score=151.38 Aligned_cols=136 Identities=19% Similarity=0.205 Sum_probs=96.0
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (641)
++.+.+|+++..++|++++|+||||+|||||+++++++.-- +++ | .|| +...+.+++.|
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-----a~~---G----------~~v---pa~~~~l~~~d 73 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-----AQI---G----------CFV---PAEYATLPIFN 73 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HHc---C----------CCc---chhhcCccChh
Confidence 34688999999999999999999999999999999986311 111 1 111 22234556666
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHH
Q 006548 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281 (641)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~ 281 (641)
++.. .++..+..++. ...+|+|++|+ ..+.+++.+|++++||||++|+|+.
T Consensus 74 ~I~~----------------------~~~~~d~~~~~------~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~ 124 (204)
T cd03282 74 RLLS----------------------RLSNDDSMERN------LSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSA 124 (204)
T ss_pred heeE----------------------ecCCccccchh------hhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHH
Confidence 6632 11221112221 23789999875 5556788999999999999999997
Q ss_pred HHHHH-HHHHHHHHHcCCEEEEEEeCC
Q 006548 282 SALLM-MVTLKKLASTGCTLLFTINQS 307 (641)
Q Consensus 282 ~~~~i-~~~L~~l~~~g~tvi~t~h~~ 307 (641)
....+ ...++.+.+.|.++|+++|..
T Consensus 125 ~~~~l~~~il~~l~~~~~~~i~~TH~~ 151 (204)
T cd03282 125 DGFAISLAILECLIKKESTVFFATHFR 151 (204)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEECChH
Confidence 76665 456778887899999988875
No 417
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.60 E-value=9.3e-15 Score=153.70 Aligned_cols=177 Identities=24% Similarity=0.295 Sum_probs=133.4
Q ss_pred cceeeceeeEEeCC-----cEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCC
Q 006548 123 DKVVKSSNGYALPG-----TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSL 197 (641)
Q Consensus 123 ~~iL~~vs~~i~~G-----e~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~l 197 (641)
++.+.+..+.++.| |++..+|+||.|||||+++++|+++|+. .|+|- .-.++|=+|...-=...
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~--~~e~p---------~lnVSykpqkispK~~~ 417 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDE--GGEIP---------VLNVSYKPQKISPKREG 417 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCc--cCccc---------ccceeccccccCccccc
Confidence 34555566666655 5899999999999999999999999875 24332 23467777765444567
Q ss_pred CHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCC
Q 006548 198 TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYH 277 (641)
Q Consensus 198 TV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsg 277 (641)
||++.+.--. + .. -.....+.++++-+.+++..|+-+. +|||||.|||+||..|=..+++.+.|||.+-
T Consensus 418 tvR~ll~~kI--r--~a-y~~pqF~~dvmkpL~ie~i~dqevq------~lSggelQRval~KOGGKpAdvYliDEpsAy 486 (592)
T KOG0063|consen 418 TVRQLLHTKI--R--DA-YMHPQFVNDVMKPLQIENIIDQEVQ------GLSGGELQRVALALCLGKPADVYLIDEPSAY 486 (592)
T ss_pred hHHHHHHHHh--H--hh-hcCHHHHHhhhhhhhHHHHHhHHhh------cCCchhhHHHHHHHhcCCCCceEEecCchhh
Confidence 8998774321 1 00 0134567889999999999988665 9999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 278 LDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 278 LD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
||+..+..--+.+++.- +.++|-.++-|+- .-.--++|||++..
T Consensus 487 lDSeQRi~AskvikRfilhakktafvVEhdf-ImaTYladrvivf~ 531 (592)
T KOG0063|consen 487 LDSEQRIIASKVIKRFILHAKKTAFVVEHDF-IMATYLADRVIVFE 531 (592)
T ss_pred cChHHHHHHHHHHHHHHHhccchhhhhhhHH-HHHHhhcceeEEEe
Confidence 99999999999999976 5567777766653 23335789987653
No 418
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.57 E-value=1.2e-14 Score=150.01 Aligned_cols=138 Identities=25% Similarity=0.261 Sum_probs=92.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--C----ceEEEEcCCCccCCCCCHHHHHHHHHHhc
Q 006548 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--Y----GSYGFVERETTLIGSLTVREYLYYSALLQ 210 (641)
Q Consensus 137 e~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~--~----~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (641)
.-++|+||||||||||+++|+|.++++. |+|.++|++.... . ..+++++|.+ +.+.++|.|+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~---G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~------ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGI---SQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP------ 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCC---ceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch------
Confidence 5789999999999999999999999875 9999999875311 1 2345666644 333444444320
Q ss_pred CCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 006548 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290 (641)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L 290 (641)
+. + | .....+..+|+++++|||++ ...+..++
T Consensus 182 -------k~---~---------------------------~-----~~~~i~~~~P~villDE~~~------~e~~~~l~ 213 (270)
T TIGR02858 182 -------KA---E---------------------------G-----MMMLIRSMSPDVIVVDEIGR------EEDVEALL 213 (270)
T ss_pred -------HH---H---------------------------H-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHH
Confidence 00 0 1 12223336999999999974 33444555
Q ss_pred HHHHHcCCEEEEEEeCChHH-H-----------HhcCCEEEEEeCCeEEEEeChhHH
Q 006548 291 KKLASTGCTLLFTINQSSTE-V-----------FGLFDRICLLSNGNTLFFGETLAC 335 (641)
Q Consensus 291 ~~l~~~g~tvi~t~h~~~~~-i-----------~~~~D~v~vL~~G~iv~~G~~~~~ 335 (641)
+.+ ++|.++|+++|.+..+ + ..+|||+++|++|+ ..|.++++
T Consensus 214 ~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 214 EAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 554 4699999999976432 2 26799999999887 55665543
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.50 E-value=8e-15 Score=143.73 Aligned_cols=79 Identities=16% Similarity=0.095 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHHHHHH--hCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEE
Q 006548 246 KGLPCGERRRVRIARELV--MRPHVLFIDEPLYHLDSVSALLMM-VTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLL 321 (641)
Q Consensus 246 ~~LSGGerqRv~IA~aL~--~~P~iLlLDEPtsgLD~~~~~~i~-~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL 321 (641)
..+|+|++| +++++. .+|+++++|||++|+|+.....+. ..++.+.++ +.++|+++|++ ++.+++|+.--+
T Consensus 60 s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v 134 (185)
T smart00534 60 STFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGV 134 (185)
T ss_pred cHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccc
Confidence 368887776 444444 499999999999999999877764 566777764 88999988886 577788764444
Q ss_pred eCCeEEEE
Q 006548 322 SNGNTLFF 329 (641)
Q Consensus 322 ~~G~iv~~ 329 (641)
.+++....
T Consensus 135 ~~~~~~~~ 142 (185)
T smart00534 135 RNLHMSAD 142 (185)
T ss_pred eEEEEEEE
Confidence 44444433
No 420
>PRK00064 recF recombination protein F; Reviewed
Probab=99.46 E-value=2e-12 Score=139.72 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=65.5
Q ss_pred CCCCCCHHHHHHHHHHHHHH---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhc
Q 006548 244 YMKGLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314 (641)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~ 314 (641)
....+|.||+|+++||+.|+ .+|+||+||||+++||+..+..+++.|.++ +..+++|+|++. .+...
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~ 345 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADL 345 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhh
Confidence 33569999999999999886 699999999999999999999999988764 346788788764 44444
Q ss_pred C--CEEEEEeCCeE
Q 006548 315 F--DRICLLSNGNT 326 (641)
Q Consensus 315 ~--D~v~vL~~G~i 326 (641)
+ ++++.+++|++
T Consensus 346 ~~~~~i~~v~~G~i 359 (361)
T PRK00064 346 LENAKIFHVEQGKI 359 (361)
T ss_pred hccCcEEEEeCCEE
Confidence 3 57999999986
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.44 E-value=9.5e-14 Score=139.51 Aligned_cols=73 Identities=25% Similarity=0.263 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHHH----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 247 GLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 247 ~LSGGerqRv~IA~aL~----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
.||||||.+++||--|+ .+.++++||||.++||...+..+.++|+++.++ .-+|+++|++ .++..+|+.+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~-~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQ-SQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTT-SEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc--ccccccccccccc
Confidence 79999999999997765 367899999999999999999999999998754 5577778875 6889999888763
No 422
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.41 E-value=1e-12 Score=131.64 Aligned_cols=120 Identities=23% Similarity=0.267 Sum_probs=80.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccC-CCCCHHHHHHHHHHhcCC
Q 006548 136 GTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI-GSLTVREYLYYSALLQLP 212 (641)
Q Consensus 136 Ge~~aIiGpsGsGKSTLl~~LaG--~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~-~~lTV~E~l~~~~~~~~~ 212 (641)
+..++|.||||+|||||||.++. .+.. .|..... ....++|..|....+ ...++.+++
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~----~G~~v~a------~~~~~~~~d~i~~~l~~~~si~~~~--------- 89 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAH----IGSFVPA------DSATIGLVDKIFTRMSSRESVSSGQ--------- 89 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHh----CCCeeEc------CCcEEeeeeeeeeeeCCccChhhcc---------
Confidence 37899999999999999999984 3322 1544322 123466666643221 111111111
Q ss_pred CccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHH-HHHHH
Q 006548 213 GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM-MVTLK 291 (641)
Q Consensus 213 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i-~~~L~ 291 (641)
..+ .-|.||++++++++.+|+++|+|||++|+|+.....+ ...++
T Consensus 90 -------------------S~f---------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~ 135 (213)
T cd03281 90 -------------------SAF---------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIE 135 (213)
T ss_pred -------------------chH---------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHH
Confidence 101 2467999999999999999999999999999765444 56888
Q ss_pred HHHHc---CCEEEEEEeCCh
Q 006548 292 KLAST---GCTLLFTINQSS 308 (641)
Q Consensus 292 ~l~~~---g~tvi~t~h~~~ 308 (641)
++.+. +.++|+++|++.
T Consensus 136 ~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 136 HLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred HHHhcCCCCcEEEEEcChHH
Confidence 88764 247888888763
No 423
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.37 E-value=3.5e-13 Score=141.96 Aligned_cols=169 Identities=24% Similarity=0.321 Sum_probs=120.8
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE-----E------ECCEeCCCCCce-----------EEEEcCCC
Q 006548 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV-----F------VNGAKSEMPYGS-----------YGFVERET 191 (641)
Q Consensus 134 ~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I-----~------~~G~~~~~~~~~-----------~~yv~Q~~ 191 (641)
+||++.+++|-||-||||-+++|+|.++|.- |.- + +.|......... .-||.|-+
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnl---g~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ip 174 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIP 174 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCC---CCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHH
Confidence 3899999999999999999999999998863 321 0 011000000000 01111111
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE
Q 006548 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFI 271 (641)
Q Consensus 192 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlL 271 (641)
... ..+|.++|.- ...++..+++++.+.|....++-+. .|||||-||.+||.+-+++.++.++
T Consensus 175 r~~-k~~v~~~l~~----------~~~r~~~~~~~~~~~L~~~~~re~~------~lsggelqrfaia~~~vq~advyMF 237 (592)
T KOG0063|consen 175 RAV-KGTVGSLLDR----------KDERDNKEEVCDQLDLNNLLDREVE------QLSGGELQRFAIAMVCVQKADVYMF 237 (592)
T ss_pred HHH-HHHHHHHHHH----------HhhcccHHHHHHHHHHhhHHHhhhh------hcccchhhhhhhhhhhhhhcceeEe
Confidence 110 1233333311 0122356788899999999988765 9999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 272 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
|||.+-||...+..-...++.+..-..=||++-|+.+ ...-+.|-+++|..
T Consensus 238 DEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLs-VLDylSDFiCcLYG 288 (592)
T KOG0063|consen 238 DEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLS-VLDYLSDFICCLYG 288 (592)
T ss_pred cCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeech-HHHhhhcceeEEec
Confidence 9999999999999999999999877777888777764 56667899998864
No 424
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.37 E-value=1.3e-12 Score=152.78 Aligned_cols=129 Identities=14% Similarity=0.129 Sum_probs=89.7
Q ss_pred eeeEEeCC-cEEEEECCCCCcHHHHHHHHHcC-CCCCCCcee-EEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHH
Q 006548 129 SNGYALPG-TMTVIMGPAKSGKSTLLRAIAGR-LPHSARMYG-EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYY 205 (641)
Q Consensus 129 vs~~i~~G-e~~aIiGpsGsGKSTLl~~LaG~-~~~~~~~~G-~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~ 205 (641)
+++.+.+| ++++|.||||+|||||||+|+|. +.+.. | .|..+ ....++|..|...
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~---G~~Vpa~------~~~~~~~~d~i~~------------- 371 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQS---GIPIPAN------EHSEIPYFEEIFA------------- 371 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHh---CCCccCC------ccccccchhheee-------------
Confidence 68888877 99999999999999999999997 22221 3 11110 0011222111100
Q ss_pred HHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHH
Q 006548 206 SALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285 (641)
Q Consensus 206 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~ 285 (641)
.. +..+.... ....+|+|+++++.|++.+ .+|+++|+|||++|+|+.....
T Consensus 372 ----~i------------------~~~~si~~------~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~a 422 (771)
T TIGR01069 372 ----DI------------------GDEQSIEQ------NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSA 422 (771)
T ss_pred ----ec------------------ChHhHHhh------hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHH
Confidence 00 00000111 2347999999999998877 8999999999999999999998
Q ss_pred H-HHHHHHHHHcCCEEEEEEeCCh
Q 006548 286 M-MVTLKKLASTGCTLLFTINQSS 308 (641)
Q Consensus 286 i-~~~L~~l~~~g~tvi~t~h~~~ 308 (641)
+ ..+|+.+.+.|.++|++||+..
T Consensus 423 la~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 423 LAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred HHHHHHHHHHhcCCEEEEECChHH
Confidence 8 5788888888999999888864
No 425
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.30 E-value=4e-12 Score=127.24 Aligned_cols=44 Identities=23% Similarity=0.362 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 006548 252 ERRRVRIARELVMRPHVLFIDEPL-----YHLDSVSALLMMVTLKKLAS 295 (641)
Q Consensus 252 erqRv~IA~aL~~~P~iLlLDEPt-----sgLD~~~~~~i~~~L~~l~~ 295 (641)
|++++.||++++.+|+++++|||| +|||+.+.+.+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999874
No 426
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.30 E-value=4e-12 Score=112.64 Aligned_cols=71 Identities=11% Similarity=0.039 Sum_probs=57.7
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CCceEEEEcCCCccCCCC
Q 006548 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----PYGSYGFVERETTLIGSL 197 (641)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~~~~~yv~Q~~~l~~~l 197 (641)
..+|+++++.+++||+++|+||||||||||++++. +|++.++|.+... ..+..++++|+ ++ ..
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf-~~ 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GL-EI 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cc-hh
Confidence 46899999999999999999999999999999986 2899999987421 22346677776 44 46
Q ss_pred CHHHHHHH
Q 006548 198 TVREYLYY 205 (641)
Q Consensus 198 TV~E~l~~ 205 (641)
|++|||.+
T Consensus 70 ti~~Ni~~ 77 (107)
T cd00820 70 RLRLNIFL 77 (107)
T ss_pred hHHhhcee
Confidence 99999976
No 427
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.29 E-value=1.2e-10 Score=118.40 Aligned_cols=193 Identities=13% Similarity=0.187 Sum_probs=139.2
Q ss_pred HHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCC-CCC--HHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHhhHh-H
Q 006548 441 RSLLIMSREWKYYWLRLILCMILTLCVGTVFSGL-GHS--LSSV----VTRVAAIFVFVSFNSLLNIAGVPALMKEIK-T 512 (641)
Q Consensus 441 R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~l-~~~--~~~~----~~r~g~lff~~~~~~~~~~~~v~~~~~er~-v 512 (641)
|+++...|||.....-+++-+++.+++|.+|-+. +.. ..+. +--.|.+.+.+...+... ... ...||. -
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~~--~~~-~~~~~~~g 77 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFFS--GIS-VIWDRQFG 77 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHh--hhH-HHHHHHhC
Confidence 6778899999999988998899989999887543 111 1111 112233333333322221 111 222333 2
Q ss_pred HHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 006548 513 YASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVY 592 (641)
Q Consensus 513 f~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~l~l~l~~~~~~sl~~~i~~~~~~~~ 592 (641)
+.++....=-+...|++||.+.+++..++..+++.++.|++.+++. ..++.+++.+++..++..+++.++++..++.+
T Consensus 78 ~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 78 FLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 2233223334578899999999999999999999999998877654 34555555666677788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHhhhc
Q 006548 593 WSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 593 ~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~~ 640 (641)
.+..+.+.+..+++++||.+.|.+.+|+ |..|+.|++|.+|+.|++
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~--~~~~i~~~~P~~~~~~~~ 201 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPA--WMQGLAKINPLTYAVDGA 201 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHH--HHHHHHHHCcHHHHHHHH
Confidence 9888898899999999999999999996 666799999999999874
No 428
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.29 E-value=3.4e-11 Score=121.26 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=85.9
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 006548 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR-LPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (641)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~-~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (641)
+.+.+|+++.+.+|++++|+||||+||||+++++++. +.+.. |...... . -.++|..| ++-.+...|
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~---G~~v~a~-~-----~~~~~~~~---i~~~~~~~d 85 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQI---GSFVPAS-S-----ATLSIFDS---VLTRMGASD 85 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhC---CCEEEcC-c-----eEEeccce---EEEEecCcc
Confidence 4688999999999999999999999999999999993 44432 6543321 1 12333222 111111111
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCC--HHHHHHHHHHHHHHhCCcEEEEeCCCCCCC
Q 006548 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP--CGERRRVRIARELVMRPHVLFIDEPLYHLD 279 (641)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LS--GGerqRv~IA~aL~~~P~iLlLDEPtsgLD 279 (641)
++.- ++| ..|-+|++-...-+.+|+++|+|||.+|.|
T Consensus 86 ~~~~-----------------------------------------~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~ 124 (222)
T cd03287 86 SIQH-----------------------------------------GMSTFMVELSETSHILSNCTSRSLVILDELGRGTS 124 (222)
T ss_pred cccc-----------------------------------------ccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCC
Confidence 1100 111 123334433334456899999999999999
Q ss_pred HHHHHHH-HHHHHHHHHc-CCEEEEEEeCCh
Q 006548 280 SVSALLM-MVTLKKLAST-GCTLLFTINQSS 308 (641)
Q Consensus 280 ~~~~~~i-~~~L~~l~~~-g~tvi~t~h~~~ 308 (641)
+.....+ ...++.+.+. +.++|+++|.+.
T Consensus 125 ~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 125 THDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred hhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 7776664 5677777766 889999888874
No 429
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.28 E-value=3.1e-11 Score=122.41 Aligned_cols=150 Identities=19% Similarity=0.226 Sum_probs=91.8
Q ss_pred EEeCCcEEEEECCCCCcHHHH-HHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhc
Q 006548 132 YALPGTMTVIMGPAKSGKSTL-LRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (641)
Q Consensus 132 ~i~~Ge~~aIiGpsGsGKSTL-l~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (641)
-+++|++++|.|+|||||||| ++++++..+++. . +.|+.. ..|..+.+.....+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~---~---------------~~yi~~------e~~~~~~~~~~~~~g 75 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGY---S---------------VSYVST------QLTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCC---c---------------EEEEeC------CCCHHHHHHHHHHhC
Confidence 477899999999999999999 799998765431 1 233322 224455444332222
Q ss_pred CCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHh----CCcEEEEeCCCCCC----CHHH
Q 006548 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM----RPHVLFIDEPLYHL----DSVS 282 (641)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~----~P~iLlLDEPtsgL----D~~~ 282 (641)
.. +++.... +.-...+ .. ..+|+++.++-.+.+.+-. +|+++++||||+++ |+..
T Consensus 76 ~~---------~~~~~~~-~~l~~~~------~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~ 138 (230)
T PRK08533 76 YD---------INKKLIS-GKLLYIP------VY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVA 138 (230)
T ss_pred Cc---------hHHHhhc-CcEEEEE------ec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHH
Confidence 11 1111110 1000000 01 2467776655555444333 69999999999999 8888
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeCChH------HHHhcCCEEEEEe
Q 006548 283 ALLMMVTLKKLASTGCTLLFTINQSST------EVFGLFDRICLLS 322 (641)
Q Consensus 283 ~~~i~~~L~~l~~~g~tvi~t~h~~~~------~i~~~~D~v~vL~ 322 (641)
...+.+.+++++++|.|+++++|+... .+..++|-|+.|+
T Consensus 139 ~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 139 VNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 889999999998888888875543310 1244567777776
No 430
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.27 E-value=8.8e-12 Score=142.31 Aligned_cols=77 Identities=21% Similarity=0.179 Sum_probs=69.6
Q ss_pred CCCCHHHHHHHHHHHHHHhC----CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 006548 246 KGLPCGERRRVRIARELVMR----PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (641)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~----P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (641)
+.+||||+||++||++++.. |++||+||||+|||+.++..+.+.|+++++ +.+||+++|++. +...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999974 799999999974 44689999999
Q ss_pred eCCe
Q 006548 322 SNGN 325 (641)
Q Consensus 322 ~~G~ 325 (641)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8764
No 431
>PRK10869 recombination and repair protein; Provisional
Probab=99.23 E-value=2.9e-11 Score=137.28 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHHHHHHHh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 006548 246 KGLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (641)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (641)
+.+||||+||++||++++. +|+++|+|||++|||..++..+.+.|+++++ +.+|||++|+|. +..+||+.+++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 3589999999999999997 5899999999999999999999999999974 688999999984 56899999999
Q ss_pred eCCe
Q 006548 322 SNGN 325 (641)
Q Consensus 322 ~~G~ 325 (641)
.++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 8753
No 432
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.23 E-value=5.7e-11 Score=115.78 Aligned_cols=79 Identities=23% Similarity=0.084 Sum_probs=65.2
Q ss_pred CCCCCCHHHHH------HHHHHHHHHhCCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCEEEEEEeCChH-----
Q 006548 244 YMKGLPCGERR------RVRIARELVMRPHVLFIDEPLYHLD---SVSALLMMVTLKKLASTGCTLLFTINQSST----- 309 (641)
Q Consensus 244 ~~~~LSGGerq------Rv~IA~aL~~~P~iLlLDEPtsgLD---~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~----- 309 (641)
.+..+|+||+| +.........+|+++++|||++.+| ......+.+.++.+++.|.|+|+++|....
T Consensus 68 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~ 147 (187)
T cd01124 68 DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGF 147 (187)
T ss_pred CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCccc
Confidence 44589999998 5555555667999999999999999 888888999999998889999998886542
Q ss_pred ---HHHhcCCEEEEEe
Q 006548 310 ---EVFGLFDRICLLS 322 (641)
Q Consensus 310 ---~i~~~~D~v~vL~ 322 (641)
.+..+||.|+.|+
T Consensus 148 ~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 148 GGGDVEYLVDGVIRLR 163 (187)
T ss_pred CcCceeEeeeEEEEEE
Confidence 2678899999986
No 433
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.22 E-value=3.1e-11 Score=147.22 Aligned_cols=82 Identities=18% Similarity=0.061 Sum_probs=74.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHh----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHH
Q 006548 242 HCYMKGLPCGERRRVRIARELVM----------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEV 311 (641)
Q Consensus 242 ~~~~~~LSGGerqRv~IA~aL~~----------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i 311 (641)
...++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++...|++|++++|.+ ...
T Consensus 945 ~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~-~~~ 1023 (1042)
T TIGR00618 945 VRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP-EFR 1023 (1042)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHH
Confidence 34567999999999999999996 7999999999999999999999999999988899999988886 578
Q ss_pred HhcCCEEEEEeCC
Q 006548 312 FGLFDRICLLSNG 324 (641)
Q Consensus 312 ~~~~D~v~vL~~G 324 (641)
..++|+|.|++.|
T Consensus 1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred HhhCCEEEEEECC
Confidence 8999999999754
No 434
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.21 E-value=2.1e-11 Score=139.42 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=69.4
Q ss_pred CCCCCCHHHHHHHHHHHHHH----------hCCcEEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHH
Q 006548 244 YMKGLPCGERRRVRIARELV----------MRPHVLFIDEPL-YHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVF 312 (641)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~----------~~P~iLlLDEPt-sgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~ 312 (641)
.+..||||||||++||++|+ .+|++||||||| ++||+.+...+.+.|+++ .|.+||+++|++ ...
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~--~~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKD--HDP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECch--hch
Confidence 55789999999999999987 599999999998 789999999999999998 578999999986 355
Q ss_pred hcCCEEEEEeC-CeE
Q 006548 313 GLFDRICLLSN-GNT 326 (641)
Q Consensus 313 ~~~D~v~vL~~-G~i 326 (641)
..||++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 77999999985 544
No 435
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.19 E-value=2.4e-11 Score=142.61 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 006548 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (641)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (641)
..+|+|++|++.|++++ .+|+++|+|||++|+|+.....+.. +++.+.+.|.++|++||++. .....+|+..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e-l~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE-LKALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH-HHHHHhcCCCeE-EE
Confidence 47999999999999998 8999999999999999999888864 67778777999999998853 444445555443 45
Q ss_pred eEEEE
Q 006548 325 NTLFF 329 (641)
Q Consensus 325 ~iv~~ 329 (641)
.+.++
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 55553
No 436
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.19 E-value=1.2e-10 Score=128.05 Aligned_cols=171 Identities=18% Similarity=0.190 Sum_probs=109.4
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC---C------C----CCceEEEEc
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS---E------M----PYGSYGFVE 188 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~---~------~----~~~~~~yv~ 188 (641)
+.++++++ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.|.+.|+.. . . ..+.++++.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~---gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~ 220 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADL---NVIALIGERGREVREFIERDLGPEGLKRSIVVVA 220 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCe---EEEEEEecCCccHHHHHHhhcChhhhcCeEEEEE
Confidence 35689999 9999999999999999999999999999988864 9999866432 1 1 124577776
Q ss_pred CCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch--HHhhhhcCCCCCCCCCHHHHHHHHHH-HHHHhC
Q 006548 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD--YANKLIGGHCYMKGLPCGERRRVRIA-RELVMR 265 (641)
Q Consensus 189 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~ig~~~~~~~LSGGerqRv~IA-~aL~~~ 265 (641)
+.+.-. -.+....+.+ -.+.|.+...|-+- +.| +|+ |.+-| |++.
T Consensus 221 ~~~~~~---~~r~~~~~~a------------~~iAEyfr~~g~~Vll~~D----------slt-----r~A~A~rEis-- 268 (438)
T PRK07721 221 TSDQPA---LMRIKGAYTA------------TAIAEYFRDQGLNVMLMMD----------SVT-----RVAMAQREIG-- 268 (438)
T ss_pred CCCCCH---HHHHHHHHHH------------HHHHHHHHHCCCcEEEEEe----------ChH-----HHHHHHHHHH--
Confidence 643211 0111111110 01222222222110 001 110 00000 1111
Q ss_pred CcEEEEeCC--CCCCCHHHHHHHHHHHHHHHH--cCC-----EEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 266 PHVLFIDEP--LYHLDSVSALLMMVTLKKLAS--TGC-----TLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 266 P~iLlLDEP--tsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
+.+.|| |+|+|+.....+.++++++.. +|. ||++..|+..+ .+||++..+.+|+++.+++..+
T Consensus 269 ---l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 269 ---LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred ---HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 112353 689999999999999999974 575 88888777653 7799999999999999998654
No 437
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.16 E-value=1.2e-10 Score=116.89 Aligned_cols=134 Identities=18% Similarity=0.176 Sum_probs=86.3
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHH
Q 006548 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (641)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (641)
+.+-+|+++..++|++++|.||||+|||||++.+++..--.. .| .........+++ -+.++..+...|+
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~--~G------~~vpa~~~~i~~---~~~i~~~~~~~d~ 85 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQ--MG------MDVPAKSMRLSL---VDRIFTRIGARDD 85 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHH--cC------CccCccccEecc---ccEEEEecCcccc
Confidence 467889999999999999999999999999999998631100 01 111111111211 1223333333333
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCH--HHHHHHHHHHHHHhCCcEEEEeCCCCCCCH
Q 006548 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC--GERRRVRIARELVMRPHVLFIDEPLYHLDS 280 (641)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSG--GerqRv~IA~aL~~~P~iLlLDEPtsgLD~ 280 (641)
+.. ++|- .|-+|++-....+.+|+++++|||.+|+|+
T Consensus 86 ~~~-----------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~ 124 (218)
T cd03286 86 IMK-----------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGTST 124 (218)
T ss_pred ccc-----------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCc
Confidence 311 1110 233333333344568999999999999999
Q ss_pred HHHHHHHHH-HHHHHHc-CCEEEEEEeCCh
Q 006548 281 VSALLMMVT-LKKLAST-GCTLLFTINQSS 308 (641)
Q Consensus 281 ~~~~~i~~~-L~~l~~~-g~tvi~t~h~~~ 308 (641)
.....+... ++.+.+. +.++|+++|++.
T Consensus 125 ~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 125 HDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 999888887 7788765 899999888863
No 438
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.16 E-value=2.2e-11 Score=124.65 Aligned_cols=75 Identities=21% Similarity=0.224 Sum_probs=61.1
Q ss_pred CCCCHHH--------HHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHH-HHHHHHHHHHcCCEEEEEEeCChHHHHhcCC
Q 006548 246 KGLPCGE--------RRRVRIARELVMRPHVLFIDEPLYHLDSVSALL-MMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316 (641)
Q Consensus 246 ~~LSGGe--------rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~-i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D 316 (641)
..+|||| +||+++||++..+++|.+| ||+.+|+.+... ++ +..+...+.|.|+.+|... ....+|
T Consensus 128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~~p 201 (249)
T cd01128 128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRIFP 201 (249)
T ss_pred CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCCCC
Confidence 4689999 9999999999999999999 999999655543 44 5555545678888788763 467899
Q ss_pred EEEEEeCCeE
Q 006548 317 RICLLSNGNT 326 (641)
Q Consensus 317 ~v~vL~~G~i 326 (641)
.|.+|+.|++
T Consensus 202 aI~vl~s~sr 211 (249)
T cd01128 202 AIDILKSGTR 211 (249)
T ss_pred eEEEcCCCCc
Confidence 9999999987
No 439
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.16 E-value=2.9e-09 Score=109.44 Aligned_cols=204 Identities=12% Similarity=0.098 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCC-CC------CH---HHHHHHHHHHHHHHHHHHHHHHh
Q 006548 432 ATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGL-GH------SL---SSVVTRVAAIFVFVSFNSLLNIA 501 (641)
Q Consensus 432 ~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~l-~~------~~---~~~~~r~g~lff~~~~~~~~~~~ 501 (641)
+++++.+++|+++...|||..+..-+++-++.-+++|.+|-.. +. +. -..+--.|.+-+.+.+.++..
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~-- 78 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQS-- 78 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHh--
Confidence 3689999999999999999999999999999999999988542 11 10 111222233333333322221
Q ss_pred hHHHHHhhHh--HHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHH
Q 006548 502 GVPALMKEIK--TYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEG 579 (641)
Q Consensus 502 ~v~~~~~er~--vf~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~l~l~l~~~~~~s 579 (641)
++ ....||. .+.+=+.... +...+.+++++..+-..++..+++.++.+. .|.+.....++.....+.+..++..+
T Consensus 79 ~~-~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~ 155 (253)
T TIGR03861 79 SL-SMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGA 155 (253)
T ss_pred hh-HhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 11 2222332 3333344443 567799999999987777776655555443 36665544444444455556677789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhceecCCCCCCc-cccccccccccHHHHHhhhc
Q 006548 580 LMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPG-PVWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 580 l~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~-~~W~~w~~yis~~~Ya~e~~ 640 (641)
+|.+++.++++.+....+.+.++.+++..||.+.+.+.+|. +-|..|+.++||+.|..|++
T Consensus 156 lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~ 217 (253)
T TIGR03861 156 LGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELV 217 (253)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHH
Confidence 99999999999988888888888899999999989877743 23777799999999999875
No 440
>PRK13695 putative NTPase; Provisional
Probab=99.14 E-value=1.4e-11 Score=119.47 Aligned_cols=78 Identities=14% Similarity=0.142 Sum_probs=63.9
Q ss_pred CCCCHHHHHHHHHHHHHHhCCcEEEEeCC--CCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 246 KGLPCGERRRVRIARELVMRPHVLFIDEP--LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P~iLlLDEP--tsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
..+||+++-+..+++..+.+|+++++||| +.++| ..+.+.+.++.+.|.++|+++|.. .+...+|++..+.+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCC
Confidence 46999999999999999999999999995 33444 445677777766789999999874 56678999999999
Q ss_pred CeEEEE
Q 006548 324 GNTLFF 329 (641)
Q Consensus 324 G~iv~~ 329 (641)
|+++..
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 998765
No 441
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.13 E-value=4.8e-10 Score=126.88 Aligned_cols=136 Identities=18% Similarity=0.258 Sum_probs=101.8
Q ss_pred CCCCHHHHHHHHHHhcCCCccch-HHHHHHHH------HHHcCCchH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCC
Q 006548 195 GSLTVREYLYYSALLQLPGFFCQ-RKNVVEDA------IHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRP 266 (641)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~-~~~~v~~~------l~~lgL~~~-~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P 266 (641)
..+++.|.+.|...+.+...... .+..+.++ |-.+||.-+ +++ ....|||||.||+-||..+=.+=
T Consensus 427 ~~msi~~~~~f~~~l~l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R------~a~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 427 SEMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSR------SAGTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred hhccHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcccccc------cCCCcChhHHHHHHHHHHhcccc
Confidence 45788888887766654332111 11122222 233455432 233 33589999999999999998763
Q ss_pred --cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHHHHH
Q 006548 267 --HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQH 338 (641)
Q Consensus 267 --~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~~ 338 (641)
=+.+||||+-||-+..-.++++.|++|++.|-|+|++-|++ ++...||+|+=| +.|+||+.|+++++++.
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~ 578 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLAN 578 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhC
Confidence 36799999999999999999999999999999999987765 678899999987 56899999999998753
No 442
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.10 E-value=1.6e-10 Score=115.79 Aligned_cols=63 Identities=25% Similarity=0.382 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHHHHHHhCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 006548 246 KGLPCGERRRVRIARELVMRP---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (641)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P---~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (641)
..+|.|+||.+.|+..|...+ .++++|||-++|+|..+..+++.|+.+.+.+.-+|+|||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 457999999999999998877 899999999999999999999999888776788999999873
No 443
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.10 E-value=2.3e-10 Score=121.14 Aligned_cols=141 Identities=14% Similarity=0.171 Sum_probs=94.7
Q ss_pred eeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CCCC-ceEEEEcCCCc-cCCCCCHHHHHHH
Q 006548 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMPY-GSYGFVERETT-LIGSLTVREYLYY 205 (641)
Q Consensus 129 vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~-~~~~-~~~~yv~Q~~~-l~~~lTV~E~l~~ 205 (641)
+++.+++|+.++|.||+|||||||+++|++.+++.. |.+.+..... .... ..+.++.+... -..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~---~iv~ied~~El~~~~~~~~~l~~~~~~~~~~---------- 203 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDE---RIITIEDTREIFLPHPNYVHLFYSKGGQGLA---------- 203 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccc---cEEEEcCccccCCCCCCEEEEEecCCCCCcC----------
Confidence 567788999999999999999999999999998764 7667653211 1110 11111111000 000
Q ss_pred HHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHH
Q 006548 206 SALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285 (641)
Q Consensus 206 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~ 285 (641)
.++- .-.+..+|-.+|+++++|||.+ .+
T Consensus 204 -----------------------------------------~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e 231 (308)
T TIGR02788 204 -----------------------------------------KVTP----KDLLQSCLRMRPDRIILGELRG-------DE 231 (308)
T ss_pred -----------------------------------------ccCH----HHHHHHHhcCCCCeEEEeccCC-------HH
Confidence 1111 1134456778999999999996 34
Q ss_pred HHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 006548 286 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 286 i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (641)
+.++++.+...+.+++.|+|..+ +.+..||+..|..|++...|.+.+.+
T Consensus 232 ~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 232 AFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 56777777643446688888875 56669999999999988888877665
No 444
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.07 E-value=7.8e-09 Score=104.84 Aligned_cols=186 Identities=14% Similarity=0.091 Sum_probs=121.0
Q ss_pred hhChHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHhhHh--HHHhhccCCCcc
Q 006548 447 SREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVT-RVAAIFVFVSFNSLLNIAGVPALMKEIK--TYASEESNMHSG 523 (641)
Q Consensus 447 ~Rd~~~~~~r~~~~~~~~l~~G~~f~~l~~~~~~~~~-r~g~lff~~~~~~~~~~~~v~~~~~er~--vf~rE~~~~~Y~ 523 (641)
+|||.....-+.+-+++-++++.+|-+-. +.+..+. -.|.+-+...+.+....+ -....||+ .+.|-+..-. +
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~er~~G~l~rl~~~P~-~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAISTAFTGQA--IAVARDRRYGALKRLGATPL-P 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhCHHHHHhcCCC-c
Confidence 68999998888888888888888776521 1111111 222222222221111111 12233444 4444444433 5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHH
Q 006548 524 ALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWK---DVYWSILTLIS 600 (641)
Q Consensus 524 ~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~l~l~l~~~~~~sl~~~i~~~~~---~~~~a~~~~~~ 600 (641)
...|+++|++..++..++..+++. +++++.|++.....+ .+++.+.+....+.+++.+++++++ +.+.+..+...
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 789999999988888877655554 556778988754333 3334444555566677777777764 44445777788
Q ss_pred HHHHHHHHhceecCCCCCCccccccccccccHHHHHhhhc
Q 006548 601 VHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 601 ~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~~ 640 (641)
+..+++++||.+.|.+.+|+ |..|+++++|.+|+.+++
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~--~lq~i~~~~P~t~~~~~~ 193 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPT--WIKWFVRVQPSSYATEAL 193 (232)
T ss_pred HHHHHHHHhheeeecccccH--HHHHHHHhCcHHHHHHHH
Confidence 88899999999999999996 777799999999999875
No 445
>PRK03918 chromosome segregation protein; Provisional
Probab=99.06 E-value=3.5e-10 Score=136.09 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=68.5
Q ss_pred CCCCCCCHHHHH------HHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCC
Q 006548 243 CYMKGLPCGERR------RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316 (641)
Q Consensus 243 ~~~~~LSGGerq------Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D 316 (641)
..+..|||||++ |++||++++.+|+++||||||+|||+..+..+.+.|+.++..+.+||+++|++ ++...||
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d 861 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAAD 861 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCC
Confidence 356789999999 55566678899999999999999999999999999999887778899988886 3678999
Q ss_pred EEEEEe
Q 006548 317 RICLLS 322 (641)
Q Consensus 317 ~v~vL~ 322 (641)
++++|.
T Consensus 862 ~~~~l~ 867 (880)
T PRK03918 862 YVIRVS 867 (880)
T ss_pred eEEEEE
Confidence 999997
No 446
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.06 E-value=1e-08 Score=105.55 Aligned_cols=200 Identities=14% Similarity=0.024 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHhhC-hHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH--HH--HHHHHHHHHHHHHHHHHhhHHHHHh-
Q 006548 435 VAVLTWRSLLIMSRE-WKYYWLRLILCMILTLCVGTVFSGLGHSLSSV--VT--RVAAIFVFVSFNSLLNIAGVPALMK- 508 (641)
Q Consensus 435 ~~~l~~R~~~~~~Rd-~~~~~~r~~~~~~~~l~~G~~f~~l~~~~~~~--~~--r~g~lff~~~~~~~~~~~~v~~~~~- 508 (641)
...+++|+++..+|+ |.....-+++-++.-+++|..|-....+..+. .+ --|.+-+++++.++.... ...+..
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~~~~~~-~~~~~~~ 85 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTASTFETI-YATFARM 85 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 456679999999999 99888889988888888888875431111111 00 112222222222211100 011222
Q ss_pred -hHhHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006548 509 -EIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASI 587 (641)
Q Consensus 509 -er~vf~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~l~l~l~~~~~~sl~~~i~~~ 587 (641)
|+..+.|-+..-. +...+.+|+++.+.-..++..++...+.+ ..|..+. ...+.++..+.+..++..++|++++.+
T Consensus 86 r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~-~~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a~~ 162 (253)
T TIGR01291 86 RVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTA-TLGYIEW-WSLIYILPVIALTGLAFASLSMLVAAL 162 (253)
T ss_pred HHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhchh-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333332222 56889999999987777776666555544 3354443 334444455566777778999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHhhhc
Q 006548 588 WKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 588 ~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~~ 640 (641)
.++.+.+..+...+..+++..||.+.+.+.+|+ |..++.+++|+.|+.|++
T Consensus 163 ~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~--~lq~i~~~nPlt~~v~~~ 213 (253)
T TIGR01291 163 APSYAYFAFYQSLVITPMLFLSGVVFPVFQLND--VIQGMTHFLPLAHSIDDI 213 (253)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhcCHHhChH--HHHHHHHHCcHHHHHHHH
Confidence 999999988889999999999999999999996 666789999999999874
No 447
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.06 E-value=5.1e-10 Score=122.19 Aligned_cols=169 Identities=16% Similarity=0.118 Sum_probs=116.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 006548 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (641)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~ 185 (641)
+.-++++..+. .+.++++++ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.|.+.|+.
T Consensus 131 ~~r~~i~~~l~----TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~---gvI~~iGer--------- 193 (432)
T PRK06793 131 FEREEITDVFE----TGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADI---NVISLVGER--------- 193 (432)
T ss_pred hheechhhccC----CCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCe---EEEEeCCCC---------
Confidence 45555554443 234688885 9999999999999999999999999999988764 777666542
Q ss_pred EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHH--
Q 006548 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV-- 263 (641)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~-- 263 (641)
..+|+|.+... +..-++... ..+ ....+-|.|+|+|++.+.+.+
T Consensus 194 ----------g~ev~e~~~~~-------------------l~~~gl~~t--vvv---~~tsd~s~~~r~ra~~~a~~iAE 239 (432)
T PRK06793 194 ----------GREVKDFIRKE-------------------LGEEGMRKS--VVV---VATSDESHLMQLRAAKLATSIAE 239 (432)
T ss_pred ----------cccHHHHHHHH-------------------hhhccccee--EEE---EECCCCCHHHHHHHHHHHHHHHH
Confidence 13566655321 111111100 001 133578999999999999888
Q ss_pred -----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 006548 264 -----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 264 -----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (641)
.++-+|++|+||++.|+. .++-..+.+....|.+..+.+|++ .+ ++|.-...+|.+...+..
T Consensus 240 yfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~--~L---~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 240 YFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMK--KL---LERSGKTQKGSITGIYTV 306 (432)
T ss_pred HHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch--hH---HHHhccCCCcceEEEEEE
Confidence 789999999999999996 555556666654577777766643 33 444445578888766553
No 448
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.03 E-value=7.1e-10 Score=134.94 Aligned_cols=80 Identities=24% Similarity=0.169 Sum_probs=70.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh--------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhc
Q 006548 243 CYMKGLPCGERRRVRIARELVM--------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314 (641)
Q Consensus 243 ~~~~~LSGGerqRv~IA~aL~~--------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~ 314 (641)
..+..|||||+++++||++|+. +|++||+||||++||+.+...+++.|..+++.|++|++++|.. ....++
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHHhc
Confidence 4567999999999999999996 8999999999999999999999999999998899999988865 455666
Q ss_pred CCEEEEEeC
Q 006548 315 FDRICLLSN 323 (641)
Q Consensus 315 ~D~v~vL~~ 323 (641)
-.+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 677777654
No 449
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.02 E-value=3.5e-09 Score=125.72 Aligned_cols=70 Identities=20% Similarity=0.185 Sum_probs=60.5
Q ss_pred HhCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHH--------HhcCCEEEEEeCCeEEEEeCh
Q 006548 263 VMRPHVLFIDEPLYHL-DSVSALLMMVTLKKLASTGCTLLFTINQSSTEV--------FGLFDRICLLSNGNTLFFGET 332 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i--------~~~~D~v~vL~~G~iv~~G~~ 332 (641)
..+|+++++|||+.+| |+..+..+.+.++++++.|.++++++|++.+.. .+.||++++|.+|++...|..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 799999999999999988999999999885421 368999999999998776643
No 450
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.01 E-value=1.6e-09 Score=102.05 Aligned_cols=64 Identities=13% Similarity=0.054 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCcEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHH
Q 006548 247 GLPCGERRRVRIARELVMRPHVLFIDEPLY----------HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310 (641)
Q Consensus 247 ~LSGGerqRv~IA~aL~~~P~iLlLDEPts----------gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~ 310 (641)
..+.++.++...+++...+|+++++||+++ ++|......+.+++....+.+.|+|+++|.+...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 345666778888899999999999999995 4555556666666666656699999999987543
No 451
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.96 E-value=1.1e-08 Score=98.00 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=59.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 006548 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (641)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (641)
..+..|-||-=---+.+. ..+--+.|||||-++|.+.-+..++..|+++++.|.-+|+.||.|.. +.----+|+-++.
T Consensus 126 sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiL-lAiP~A~I~~~~~ 203 (233)
T COG3910 126 SLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPIL-LAIPGAEIYEISE 203 (233)
T ss_pred chhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhh-eeCCCcEEEEEec
Confidence 345678898755444444 35678999999999999999999999999999999999999999852 2112234444544
Q ss_pred C
Q 006548 324 G 324 (641)
Q Consensus 324 G 324 (641)
+
T Consensus 204 ~ 204 (233)
T COG3910 204 S 204 (233)
T ss_pred C
Confidence 3
No 452
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.94 E-value=2.9e-09 Score=132.72 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=77.4
Q ss_pred CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCC---CCCCCCCHHHHH------HHHHHHHHHhCC
Q 006548 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH---CYMKGLPCGERR------RVRIARELVMRP 266 (641)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~---~~~~~LSGGerq------Rv~IA~aL~~~P 266 (641)
..|+.|||.+ + +.. ..+ ...++..+..++....+.|+ ..+..||||||| |++||++++.+|
T Consensus 1155 ~~~~~~~i~~----~-~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~ 1224 (1311)
T TIGR00606 1155 RGQDIEYIEI----R-SDA---DEN--VSASDKRRNYNYRVVMLKGDTALDMRGRCSAGQKVLASLIIRLALAETFCLNC 1224 (1311)
T ss_pred CccHHHHhhc----C-CCC---ChH--HHHHHHcCchHHHhccCCCCeecCCCCCCchhhhhHhhHhHHHHHHHHHhcCC
Confidence 3588898865 1 111 111 23333344433333333321 244579999999 999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCEEEEEEeCChHHHHhcC
Q 006548 267 HVLFIDEPLYHLDSVSALLMMVTLKKLAS-----TGCTLLFTINQSSTEVFGLF 315 (641)
Q Consensus 267 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tvi~t~h~~~~~i~~~~ 315 (641)
++|+|||||+|||+.+...+.+.|..+.. .|.+||+++|++ ..+..+|
T Consensus 1225 ~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~-~~~~~~~ 1277 (1311)
T TIGR00606 1225 GIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE-DFVELLG 1277 (1311)
T ss_pred CEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH-HHHHHHh
Confidence 99999999999999999999999988742 378999988876 4676664
No 453
>PRK01156 chromosome segregation protein; Provisional
Probab=98.93 E-value=2.8e-09 Score=128.55 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=66.0
Q ss_pred CCCCCCHHHHHHHHH------HHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-Hc-C-CEEEEEEeCChHHHHhc
Q 006548 244 YMKGLPCGERRRVRI------ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-ST-G-CTLLFTINQSSTEVFGL 314 (641)
Q Consensus 244 ~~~~LSGGerqRv~I------A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~-g-~tvi~t~h~~~~~i~~~ 314 (641)
.+..||||||+|++| |++++.+|++++|||||+|||+.....+.+.|+... .. | .++|+++|++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 467899999999975 589999999999999999999999999999998654 33 3 47888888873 4578
Q ss_pred CCEEEEEe
Q 006548 315 FDRICLLS 322 (641)
Q Consensus 315 ~D~v~vL~ 322 (641)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 454
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.89 E-value=3.7e-08 Score=100.10 Aligned_cols=162 Identities=17% Similarity=0.181 Sum_probs=95.4
Q ss_pred eeece-eeEEeCCcEEEEECCCCCcHHHHHHHHH-cCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHH
Q 006548 125 VVKSS-NGYALPGTMTVIMGPAKSGKSTLLRAIA-GRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (641)
Q Consensus 125 iL~~v-s~~i~~Ge~~aIiGpsGsGKSTLl~~La-G~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (641)
-|+.+ .+=+++|.++.|.|++|+|||||...++ +....+ + .+.|+..+. +..+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g----~--------------~~~y~~~e~------~~~~~ 68 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQG----K--------------KVYVITTEN------TSKSY 68 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCC----C--------------EEEEEEcCC------CHHHH
Confidence 34443 4557899999999999999999998875 222211 2 233443321 22332
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHh--CCcEEEEeCCCCC---
Q 006548 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM--RPHVLFIDEPLYH--- 277 (641)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~--~P~iLlLDEPtsg--- 277 (641)
+.-...+... +++.+. .|...+.+..+. .....+.++++.+.....++. +|+++++||||+.
T Consensus 69 ~~~~~~~g~~---------~~~~~~-~g~l~i~~~~~~---~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~ 135 (234)
T PRK06067 69 LKQMESVKID---------ISDFFL-WGYLRIFPLNTE---GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATY 135 (234)
T ss_pred HHHHHHCCCC---------hhHHHh-CCCceEEecccc---ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhc
Confidence 2211111110 001100 011111111111 112356788999999999997 9999999999964
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEEeCChH------HHHhcCCEEEEEeC
Q 006548 278 LDSVSALLMMVTLKKLASTGCTLLFTINQSST------EVFGLFDRICLLSN 323 (641)
Q Consensus 278 LD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~------~i~~~~D~v~vL~~ 323 (641)
+|......+++.++.++++|.|+++++|+... .+..++|-++.|+.
T Consensus 136 ~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 136 AEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 45555556666677777788999998887642 14667787777763
No 455
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.84 E-value=3.8e-09 Score=130.41 Aligned_cols=76 Identities=14% Similarity=0.168 Sum_probs=66.2
Q ss_pred CCCCCCHHHHHHHHHHHHHH----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEE
Q 006548 244 YMKGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319 (641)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~ 319 (641)
.+..||||||+|++||++++ .+|+++||||||+|||+.+...+.++|+.+++ +.++|+++|++. ....||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhHe
Confidence 55789999999999999985 56799999999999999999999999999875 467888899874 457899998
Q ss_pred EEe
Q 006548 320 LLS 322 (641)
Q Consensus 320 vL~ 322 (641)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 664
No 456
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=98.83 E-value=3e-08 Score=98.70 Aligned_cols=112 Identities=17% Similarity=0.076 Sum_probs=93.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006548 523 GALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVH 602 (641)
Q Consensus 523 ~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~l~l~l~~~~~~sl~~~i~~~~~~~~~a~~~~~~~~ 602 (641)
+...++++|++..++..+++++++..+.||+.|++.. .++.+++.+++..++..+++.+++++.++...+. ....+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHHH
Confidence 3457799999999999999999999999999999874 5777788888889999999999999999765443 33444
Q ss_pred HHHHHHhceecCCCCCCccccccccccccHHHHHhhhc
Q 006548 603 VVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 603 ~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~~ 640 (641)
.+.++++|.+.|.+.+|+ |..|++|++|.+|+.+++
T Consensus 134 ~~~~~~sG~~~P~~~~P~--~~~~i~~~~P~t~~~~~~ 169 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPA--FFQAIHPFLPMTYSVNGL 169 (208)
T ss_pred HHHHccCCCccchhhCHH--HHHHhhhhCcHHHHHHHH
Confidence 566677888899999996 666799999999999975
No 457
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.79 E-value=2e-08 Score=102.40 Aligned_cols=135 Identities=23% Similarity=0.389 Sum_probs=81.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-EeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCc
Q 006548 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (641)
Q Consensus 136 Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G-~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 214 (641)
|++..|+||+|+|||||+-.++=-... |.=.+.+ ... .....+.|+.=|+..
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~-----G~~~~g~~~~~-~~~~~Vlyi~~Ed~~--------------------- 53 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMAL-----GKNLFGGGLKV-TEPGRVVYLSAEDPR--------------------- 53 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhc-----CccccCCcccc-CCCceEEEEECCCCH---------------------
Confidence 678999999999999998887642221 2211111 111 112234444322211
Q ss_pred cchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHH----------------HHHhCCcEEEEeCCCC--
Q 006548 215 FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR----------------ELVMRPHVLFIDEPLY-- 276 (641)
Q Consensus 215 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~----------------aL~~~P~iLlLDEPts-- 276 (641)
.+..+++..+...+++.+..++.. ..+|+.|++.+++ ....+|+++++| |++
T Consensus 54 -~~i~~Rl~~i~~~~~~~~~~~rl~--------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~ 123 (239)
T cd01125 54 -EEIHRRLEAILQHLEPDDAGDRLF--------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSF 123 (239)
T ss_pred -HHHHHHHHHHHhhcCCcCcccceE--------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHh
Confidence 012334555556565544433322 1244555554433 335799999999 765
Q ss_pred ----CCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCC
Q 006548 277 ----HLDSVSALLMMVTLKKLAST-GCTLLFTINQS 307 (641)
Q Consensus 277 ----gLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~ 307 (641)
.+|+.....+++.|++++++ |++|++++|..
T Consensus 124 ~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 124 HGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 47999999999999999854 89999866654
No 458
>PRK15066 inner membrane transport permease; Provisional
Probab=98.77 E-value=9.9e-07 Score=90.96 Aligned_cols=204 Identities=16% Similarity=0.112 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHHhhChHH-HHHHHHHHHHHHHHHHHHhcCC-CC--CHH-HHHHHHHHHHHHHHHHHHHHHhhHHH
Q 006548 431 SATRVAVLTWRSLLIMSREWKY-YWLRLILCMILTLCVGTVFSGL-GH--SLS-SVVTRVAAIFVFVSFNSLLNIAGVPA 505 (641)
Q Consensus 431 ~~~Q~~~l~~R~~~~~~Rd~~~-~~~r~~~~~~~~l~~G~~f~~l-~~--~~~-~~~~r~g~lff~~~~~~~~~~~~v~~ 505 (641)
.++-++.+.+|+.+...||+.. ...-+++.++..+++|.++-.. +. +.+ -..--.|.+-+.....+.+.. ...
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~~~--~~~ 83 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYSNV--ASS 83 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 3667889999999999999854 3344455566677777665321 11 111 011111333222222221111 112
Q ss_pred HHhhHhH-HHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006548 506 LMKEIKT-YASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVV 584 (641)
Q Consensus 506 ~~~er~v-f~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~l~l~l~~~~~~sl~~~i 584 (641)
+..+|.. ..++-..---+...+.+++++...-..++..++..++.+...|.... ....++..+.+...+....++++
T Consensus 84 i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~ 161 (257)
T PRK15066 84 FFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLIN 161 (257)
T ss_pred HHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223211 11111122345677889999987766666655555555444466543 22233333333334344458888
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHhhhc
Q 006548 585 ASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 585 ~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~~ 640 (641)
+.+.++......+...++.+++..||.+.+.+.+|+ |.+|+.++||+.|..|++
T Consensus 162 a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~--~l~~i~~~nPlt~~v~~~ 215 (257)
T PRK15066 162 AVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPP--FWQGVSKLNPIVYMVNAF 215 (257)
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChH--HHHHHHHHCcHHHHHHHH
Confidence 888899888888888888999999999999999995 777799999999999874
No 459
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.76 E-value=1.2e-08 Score=126.25 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=67.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEE
Q 006548 244 YMKGLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319 (641)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~ 319 (641)
.+..||||||++++||++++. .|+++|||||++|||+.+...+.++|+++++ +..+|+++|++. +...||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeE
Confidence 456899999999999999985 6799999999999999999999999999865 466788888873 668999999
Q ss_pred EEeC
Q 006548 320 LLSN 323 (641)
Q Consensus 320 vL~~ 323 (641)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8753
No 460
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.76 E-value=3.5e-08 Score=97.82 Aligned_cols=57 Identities=25% Similarity=0.258 Sum_probs=42.3
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (641)
+|+++|..+|+++++|||. |..+...+ .+.+..|..++.|+|.++ +.+..||++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~----l~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLA----LTAAETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHH----HHHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4778899999999999996 55543333 334567889999999885 346688887764
No 461
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.75 E-value=7.7e-09 Score=112.97 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=45.1
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC
Q 006548 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE 178 (641)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~ 178 (641)
+.+|++||+.+++||+++|+|||||||||||+ +|+..|.. .|+|.++|.+..
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~s--Gg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSE--GYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCC--CCEEEECCEECC
Confidence 46899999999999999999999999999999 67776654 248999998753
No 462
>PRK02224 chromosome segregation protein; Provisional
Probab=98.73 E-value=2.5e-08 Score=120.21 Aligned_cols=79 Identities=24% Similarity=0.337 Sum_probs=66.7
Q ss_pred CCCCCCHHHHH------HHHHHHHHHhC-----C-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC-EEEEEEeCChHH
Q 006548 244 YMKGLPCGERR------RVRIARELVMR-----P-HVLFIDEPLYHLDSVSALLMMVTLKKLASTGC-TLLFTINQSSTE 310 (641)
Q Consensus 244 ~~~~LSGGerq------Rv~IA~aL~~~-----P-~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~-tvi~t~h~~~~~ 310 (641)
.+..||||||+ |++||++++.+ | +++|+||||++||+.....+.++|+.+...|. +||+++|++.
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~-- 855 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE-- 855 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--
Confidence 35689999999 99999999864 3 67999999999999999999999999986664 7888888873
Q ss_pred HHhcCCEEEEEeCC
Q 006548 311 VFGLFDRICLLSNG 324 (641)
Q Consensus 311 i~~~~D~v~vL~~G 324 (641)
....||+++.|.+.
T Consensus 856 ~~~~ad~~~~~~~~ 869 (880)
T PRK02224 856 LVGAADDLVRVEKD 869 (880)
T ss_pred HHHhcCeeEEeecC
Confidence 34679999999643
No 463
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.69 E-value=1.2e-08 Score=114.61 Aligned_cols=164 Identities=18% Similarity=0.197 Sum_probs=100.4
Q ss_pred eece-eeEEeCCcEEEEECCCCCcHHHHHHHH--HcCCCCCCCceeEEEECCEeCCC----CCceEEEEcCCCccCCCCC
Q 006548 126 VKSS-NGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEM----PYGSYGFVERETTLIGSLT 198 (641)
Q Consensus 126 L~~v-s~~i~~Ge~~aIiGpsGsGKSTLl~~L--aG~~~~~~~~~G~I~~~G~~~~~----~~~~~~yv~Q~~~l~~~lT 198 (641)
|+.+ .+=+.+|..+.|.|++|||||||..-. .|....+. .-+++....... ..+.+|+-.++..--
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge---~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~---- 82 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDE---PGVFVTFEESPQDIIKNARSFGWDLQKLVDE---- 82 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC---CEEEEEEecCHHHHHHHHHHcCCCHHHHhhc----
Confidence 4443 456778999999999999999998866 45444332 445554332100 001222221110000
Q ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHH--HHHHhCCcEEEEeCCCC
Q 006548 199 VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA--RELVMRPHVLFIDEPLY 276 (641)
Q Consensus 199 V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA--~aL~~~P~iLlLDEPts 276 (641)
+++.+ . .. ........+++.+++.+..++... .+|+|++|||.|+ .+|...|+..
T Consensus 83 --g~l~~-----~-~~--~~~~~~~~~~~~~~l~~~l~~i~~------~ls~g~~qRVvIDSl~aL~~~~~~~------- 139 (484)
T TIGR02655 83 --GKLFI-----L-DA--SPDPEGQDVVGGFDLSALIERINY------AIRKYKAKRVSIDSVTAVFQQYDAV------- 139 (484)
T ss_pred --CceEE-----E-ec--CchhccccccccCCHHHHHHHHHH------HHHHhCCcEEEEeehhHhhhhcCch-------
Confidence 00000 0 00 000111234556777777777664 8999999999999 6666665543
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHH-------H-HhcCCEEEEEe
Q 006548 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE-------V-FGLFDRICLLS 322 (641)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~-------i-~~~~D~v~vL~ 322 (641)
...+..+.++++.+++.|+|+|+++|+.... + ..+||.|+.|+
T Consensus 140 ---~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 ---SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ---HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677889999999988899999999876421 2 56799999987
No 464
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.65 E-value=7.1e-08 Score=106.99 Aligned_cols=151 Identities=15% Similarity=0.166 Sum_probs=92.4
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHH
Q 006548 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (641)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (641)
.++++.+..+..|++++++||||+||||++..|++.+.... |. +.++++.+|. ...++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~---G~------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRH---GA------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhc---CC------------CeEEEEeCCc---cchhHHHHH
Confidence 34566777788899999999999999999999999765432 31 2467777765 357899999
Q ss_pred HHHHHhc-CCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHH-HHHHHHHHHhCC-----cEEEEeCCCC
Q 006548 204 YYSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR-RVRIARELVMRP-----HVLFIDEPLY 276 (641)
Q Consensus 204 ~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq-Rv~IA~aL~~~P-----~iLlLDEPts 276 (641)
.+.+.+. .+.. ......+...+..++.+....++. ....+++. .+.-..+++.++ .+|+||.++.
T Consensus 306 r~~AeilGVpv~--~~~~~~Dl~~aL~~L~d~d~VLID------TaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 306 RIYGKILGVPVH--AVKDAADLRLALSELRNKHIVLID------TIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHhCCCee--ccCCchhHHHHHHhccCCCeEEeC------CCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 8765543 3221 111223344455566655444443 32222322 233444455554 6899999998
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEEeC
Q 006548 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQ 306 (641)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~ 306 (641)
+ ..+.+.++.....+.+-++.|+-
T Consensus 378 ~------~~l~~i~~~f~~~~~~g~IlTKl 401 (484)
T PRK06995 378 G------DTLNEVVQAYRGPGLAGCILTKL 401 (484)
T ss_pred H------HHHHHHHHHhccCCCCEEEEeCC
Confidence 7 34455555655555544443443
No 465
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.63 E-value=1.1e-06 Score=79.49 Aligned_cols=118 Identities=26% Similarity=0.339 Sum_probs=76.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCc
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 214 (641)
+|..+.|.||+|+||||+++.|++...... .+-+.++...... .......
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~----------------~~~~~~~------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILE----------------EVLDQLL------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccc----------------cCHHHHH------------
Confidence 367899999999999999999999876531 1244444332110 0000000
Q ss_pred cchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHH------
Q 006548 215 FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV------ 288 (641)
Q Consensus 215 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~------ 288 (641)
.... ........+++..+..+.++--.+|+++++||+..-.+.........
T Consensus 51 -----------------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~ 107 (148)
T smart00382 51 -----------------LIIV------GGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRL 107 (148)
T ss_pred -----------------hhhh------hccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHH
Confidence 0000 11223567788888888888877899999999999999988887665
Q ss_pred HHHHHHHcCCEEEEEEe
Q 006548 289 TLKKLASTGCTLLFTIN 305 (641)
Q Consensus 289 ~L~~l~~~g~tvi~t~h 305 (641)
........+..+|+++|
T Consensus 108 ~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 108 LLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHhcCCCEEEEEeC
Confidence 22233345678888777
No 466
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.62 E-value=6.5e-07 Score=106.99 Aligned_cols=55 Identities=25% Similarity=0.338 Sum_probs=48.4
Q ss_pred HHHHHHhCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHh
Q 006548 258 IARELVMRPHVLFIDEPLYHL-DSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 313 (641)
Q Consensus 258 IA~aL~~~P~iLlLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~ 313 (641)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.++++++|++. ++.+
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~-d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLS-DAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHhh
Confidence 677888999999999999999 799999999999999988999999888875 4443
No 467
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.54 E-value=1.5e-07 Score=92.35 Aligned_cols=80 Identities=20% Similarity=0.197 Sum_probs=57.2
Q ss_pred eeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CCC-CceEEEEcC--CCccCCCCCHHH
Q 006548 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMP-YGSYGFVER--ETTLIGSLTVRE 201 (641)
Q Consensus 126 L~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~-~~~-~~~~~yv~Q--~~~l~~~lTV~E 201 (641)
.+=+.+.+++|+.++|+||||||||||+++|+|+++++. |.|.+.+... ... ...++++.| ++...+..++.+
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~---~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDE---RIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCC---CEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHH
Confidence 344455677899999999999999999999999998765 8999977432 111 233455544 334456778888
Q ss_pred HHHHHHH
Q 006548 202 YLYYSAL 208 (641)
Q Consensus 202 ~l~~~~~ 208 (641)
.+....+
T Consensus 92 ~l~~~lR 98 (186)
T cd01130 92 LLRSALR 98 (186)
T ss_pred HHHHHhc
Confidence 8866543
No 468
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.50 E-value=1.4e-07 Score=103.25 Aligned_cols=169 Identities=14% Similarity=0.065 Sum_probs=108.2
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----------CCCceEEEEcCC
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-----------MPYGSYGFVERE 190 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~-----------~~~~~~~yv~Q~ 190 (641)
+.++|+++ +.+.+|+.++|+|+||+|||||+++|+|..+++...-|.|-.+|.+.. ..+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 45799999 999999999999999999999999999998776423355555553321 123368999999
Q ss_pred CccCCCCCHHHHHHHHHHhcCCCccc-----hHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhC
Q 006548 191 TTLIGSLTVREYLYYSALLQLPGFFC-----QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (641)
Q Consensus 191 ~~l~~~lTV~E~l~~~~~~~~~~~~~-----~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (641)
...+..+++.|++.+.+......... +.-.+..++.+++++
T Consensus 221 ~s~~~rl~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REisl---------------------------------- 266 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIAL---------------------------------- 266 (434)
T ss_pred CChhhhHHHHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHHHH----------------------------------
Confidence 99999999999997765432110000 011111122222211
Q ss_pred CcEEEEeCC--CCCCCHHHHHHHHHHHHHHH--H-cC-CEEEEEEeCChHHHH-hcCCEEEEEeCCeEEEE
Q 006548 266 PHVLFIDEP--LYHLDSVSALLMMVTLKKLA--S-TG-CTLLFTINQSSTEVF-GLFDRICLLSNGNTLFF 329 (641)
Q Consensus 266 P~iLlLDEP--tsgLD~~~~~~i~~~L~~l~--~-~g-~tvi~t~h~~~~~i~-~~~D~v~vL~~G~iv~~ 329 (641)
.+.|| +.|-.+..-..+-+++.+-- + .| .|.+.++.-+.+++. -++|.+.-+-||+++..
T Consensus 267 ----~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs 333 (434)
T PRK07196 267 ----SLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS 333 (434)
T ss_pred ----hcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence 12243 23566666666667776652 2 23 577777766654433 34777777789999864
No 469
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.49 E-value=1.1e-06 Score=97.03 Aligned_cols=173 Identities=16% Similarity=0.102 Sum_probs=100.3
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------------CCceEEEEc
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-------------PYGSYGFVE 188 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~-------------~~~~~~yv~ 188 (641)
+.++++++ +.+.+||.++|+|+||+|||||+++|+|..+++. |.+...|..... ..+.+.++.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~---~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~ 225 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADV---NVIALIGERGREVREFIEHDLGEEGLKRSVVVVA 225 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCE---EEEEEEeecchHHHHHHHHHhcccccceEEEEEE
Confidence 35789999 9999999999999999999999999999987753 666555542110 001112222
Q ss_pred CCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCH-HHHHHHHHHHHHHhCCc
Q 006548 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC-GERRRVRIARELVMRPH 267 (641)
Q Consensus 189 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSG-GerqRv~IA~aL~~~P~ 267 (641)
+.+. +..+-. + .....-.+.|.+...|-+ -++ ...+|+- -|-+| ++.
T Consensus 226 ~~d~-----~p~~r~------~----~~~~a~t~AE~frd~G~~----Vll----~~DslTr~A~A~R-----Eis---- 273 (440)
T TIGR01026 226 TSDQ-----SPLLRL------K----GAYVATAIAEYFRDQGKD----VLL----LMDSVTRFAMAQR-----EIG---- 273 (440)
T ss_pred CCCC-----CHHHHH------H----HHHHHHHHHHHHHHCCCC----EEE----EEeChHHHHHHHH-----HHH----
Confidence 2111 000000 0 000111233333333321 000 0011210 11111 111
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHHcCC-------EEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 006548 268 VLFIDEP--LYHLDSVSALLMMVTLKKLASTGC-------TLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 268 iLlLDEP--tsgLD~~~~~~i~~~L~~l~~~g~-------tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (641)
+.+.|| +.|+|+.....+-+++.+....+. ||++..|+.. ..++|++.-+.+|+++.+....+
T Consensus 274 -l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 274 -LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred -HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchhh
Confidence 234575 459999999999999999875555 5555555442 34689999999999999887654
No 470
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.48 E-value=2.2e-07 Score=100.66 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHHHHHh---------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 006548 246 KGLPCGERRRVRIARELVM---------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (641)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~---------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (641)
..+|.||+|++.||..|+. +|+||+||||+++||+..+..+++.|+.. |..+++|+|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 3499999999999999999 99999999999999999999999999764 678899888764
No 471
>PRK14079 recF recombination protein F; Provisional
Probab=98.47 E-value=2.8e-07 Score=99.38 Aligned_cols=74 Identities=18% Similarity=0.073 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHH---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCE
Q 006548 247 GLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (641)
Q Consensus 247 ~LSGGerqRv~IA~aL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (641)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.... .+ ++|+.++ ...+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~-~it~t~~----~~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QA-IVAGTEA----PPGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cE-EEEcCCC----CCCCce
Confidence 48999999999999999 8999999999999999999999998886532 23 4443332 357999
Q ss_pred EEEEeCCeEEE
Q 006548 318 ICLLSNGNTLF 328 (641)
Q Consensus 318 v~vL~~G~iv~ 328 (641)
++.+.+|++.-
T Consensus 335 ~~~~~~~~~~~ 345 (349)
T PRK14079 335 TLRIEAGVFTP 345 (349)
T ss_pred EEEEeccEecC
Confidence 99999998753
No 472
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.43 E-value=1.6e-06 Score=93.27 Aligned_cols=56 Identities=25% Similarity=0.277 Sum_probs=41.6
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 006548 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (641)
Q Consensus 257 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (641)
+++++|-.+|+++++||+. |..++...++ .+..|.+++.|+|..+ +....+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~--~~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNS--AAQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCC--HHHHHHHHHHh
Confidence 3567888999999999997 8888765444 3567989898888864 34556777654
No 473
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.39 E-value=8.9e-07 Score=106.97 Aligned_cols=79 Identities=27% Similarity=0.271 Sum_probs=69.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHH------hC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhc
Q 006548 243 CYMKGLPCGERRRVRIARELV------MR--PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314 (641)
Q Consensus 243 ~~~~~LSGGerqRv~IA~aL~------~~--P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~ 314 (641)
..+..|||||+=.++||-+|+ .+ -++|||||||..||+.+...+++.|..+...+.+|++++|++ +..+.
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~ 888 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKER 888 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHh
Confidence 366789999999888887776 35 689999999999999999999999999998899999988886 67789
Q ss_pred CCEEEEEeC
Q 006548 315 FDRICLLSN 323 (641)
Q Consensus 315 ~D~v~vL~~ 323 (641)
+|.++.++.
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 999998864
No 474
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.38 E-value=2.4e-07 Score=91.52 Aligned_cols=112 Identities=15% Similarity=0.169 Sum_probs=63.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHH-HhcCCCccc
Q 006548 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSA-LLQLPGFFC 216 (641)
Q Consensus 138 ~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~ 216 (641)
+++|.||||||||||.++|++.+.. |.+.+-+ +++.+ ..++..+...... ....+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~-----~~~~v~~--------------~D~~~-~~~~~~~~~~~~~~~~~~~~~-- 58 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGN-----PKVVIIS--------------QDSYY-KDLSHEELEERKNNNYDHPDA-- 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC-----CCeEEEE--------------ecccc-cccccccHHHhccCCCCCCCc--
Confidence 4899999999999999999998721 3333322 22211 1122222221110 0011111
Q ss_pred hHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCH
Q 006548 217 QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280 (641)
Q Consensus 217 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~ 280 (641)
...+...+.++.+...+..+. ...+.|.|++++..+ .+.+|+++|+|+|+.+.++
T Consensus 59 ~~~~~~~~~l~~l~~~~~~~~------p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 59 FDFDLLISHLQDLKNGKSVEI------PVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ccHHHHHHHHHHHHCCCCEec------cccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 112234455555544332222 234778888776555 5678999999999999886
No 475
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.35 E-value=1e-06 Score=96.77 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=65.1
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCC-
Q 006548 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA---KSE- 178 (641)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~---~~~- 178 (641)
...+..++++..+.. +.++++.++ .+.+||.++|+||||||||||+++|+++.+++. |.|.+.|+ +..
T Consensus 137 p~~~~r~~v~~~l~T----Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~---gvv~liGergrev~e 208 (450)
T PRK06002 137 PPAMTRARVETGLRT----GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDT---VVIALVGERGREVRE 208 (450)
T ss_pred CCCeEeecceEEcCC----CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCe---eeeeecccCCccHHH
Confidence 346788999988853 357888886 899999999999999999999999999988864 88888653 211
Q ss_pred --------CCCceEEEEcCCCc
Q 006548 179 --------MPYGSYGFVERETT 192 (641)
Q Consensus 179 --------~~~~~~~yv~Q~~~ 192 (641)
...+.+++|+|.+.
T Consensus 209 ~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 209 FLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HhHHHHHHhhCCeEEEEEcCCC
Confidence 12256899999765
No 476
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.33 E-value=7.8e-06 Score=77.64 Aligned_cols=128 Identities=15% Similarity=0.092 Sum_probs=91.6
Q ss_pred hhHhHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 006548 508 KEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFS--LLMYFVLNFFMCLLVNEGLMLVVA 585 (641)
Q Consensus 508 ~er~vf~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~--~F~~f~l~l~l~~~~~~sl~~~i~ 585 (641)
.|+.++.|-+..-. +...|+++|++...-..+++.++..++.+. .|.+.... .++.+++...+.......++..++
T Consensus 16 r~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a 93 (152)
T TIGR01248 16 REIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMA 93 (152)
T ss_pred HHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556777776666 477899999999998888888877777754 48877632 222333333444455556666666
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHhhhc
Q 006548 586 SIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 586 ~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~~ 640 (641)
...++.+... ....++.++++.+|.+.|.+.+|+ |+.|+.+++|.+|+.|++
T Consensus 94 ~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~--wlq~ia~~~Plt~~~~~~ 145 (152)
T TIGR01248 94 LRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPD--WAQPLIAHQPISPAIEAC 145 (152)
T ss_pred HHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcH--HHHHHHhhCCccHHHHHH
Confidence 6566655434 346667788888888899999995 888899999999999975
No 477
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.33 E-value=9.2e-07 Score=105.53 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHHHHh--CCcEEEEeCC---CCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCE
Q 006548 247 GLPCGERRRVRIARELVM--RPHVLFIDEP---LYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDR 317 (641)
Q Consensus 247 ~LSGGerqRv~IA~aL~~--~P~iLlLDEP---tsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~ 317 (641)
++|-=+.....++..|-. +++++|+||| |+.+|..+ .....++.+.+. |.+++++||.+ ++.+++++
T Consensus 666 g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 666 GRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred CcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 667666666666666655 8999999999 88899433 456677777765 58889988884 56777765
No 478
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.32 E-value=2.2e-05 Score=93.70 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=42.9
Q ss_pred HHHhCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 006548 261 ELVMRPHVLFIDEPLYHLD-SVSALLMMVTLKKLASTGCTLLFTINQSS 308 (641)
Q Consensus 261 aL~~~P~iLlLDEPtsgLD-~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (641)
.+..+|.++++|||...|| +..+..+.+.++.+++.|..+++++|.+.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3456899999999999999 88999999999999988989999888875
No 479
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.31 E-value=1.7e-07 Score=94.75 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=26.5
Q ss_pred eeece-eeEEeCCcEEEEECCCCCcHHHHHHHHH
Q 006548 125 VVKSS-NGYALPGTMTVIMGPAKSGKSTLLRAIA 157 (641)
Q Consensus 125 iL~~v-s~~i~~Ge~~aIiGpsGsGKSTLl~~La 157 (641)
-|+.+ .+=+++|++++|.|++|+|||||...++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 34443 4567899999999999999999988655
No 480
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.23 E-value=2.8e-05 Score=92.90 Aligned_cols=46 Identities=28% Similarity=0.380 Sum_probs=41.4
Q ss_pred HhCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 006548 263 VMRPHVLFIDEPLYHLD-SVSALLMMVTLKKLASTGCTLLFTINQSS 308 (641)
Q Consensus 263 ~~~P~iLlLDEPtsgLD-~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (641)
-.+|+++++|||+.+|| +..+..+.+.++.+++.|.++++++|++.
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 35899999999999999 78899999999999988999999888875
No 481
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.23 E-value=1.6e-06 Score=108.24 Aligned_cols=60 Identities=18% Similarity=0.276 Sum_probs=51.8
Q ss_pred CCCCCHHHHHHHH----HHHH--------HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCC
Q 006548 245 MKGLPCGERRRVR----IARE--------LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307 (641)
Q Consensus 245 ~~~LSGGerqRv~----IA~a--------L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~ 307 (641)
..+||||||||++ +|++ +..+|++++|||||+|||+.+...++++++++ |.++|++++..
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 4689999999996 5655 55899999999999999999999999999988 67888876653
No 482
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.20 E-value=3.2e-05 Score=79.19 Aligned_cols=126 Identities=25% Similarity=0.269 Sum_probs=92.1
Q ss_pred hHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC
Q 006548 511 KTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVA-SIWK 589 (641)
Q Consensus 511 ~vf~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~l~l~l~~~~~~sl~~~i~-~~~~ 589 (641)
..+.|=..+...+ ..+++++.+...-...+...+...++.+..| ......+..+...+.+......+++.+++ .+..
T Consensus 118 g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 195 (286)
T COG0842 118 GTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLG-VPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKS 195 (286)
T ss_pred CcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444443 4566777777766666666666666666777 33334556666667777777778888555 3667
Q ss_pred CHHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHhhhc
Q 006548 590 DVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKAC 640 (641)
Q Consensus 590 ~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e~~ 640 (641)
+.+.+..++..+..++++++|.+.|.+.+|. |..|+.++.|.+|+.|++
T Consensus 196 ~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~--~~~~i~~~~P~t~~~~~~ 244 (286)
T COG0842 196 QLQCASAVGNLLILPLGFLSGVFFPLELLPA--WLQGISYINPLTYAIDAL 244 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCchhhhHH--HHHHHHHHccHHHHHHHH
Confidence 7888888888899999999999999999996 777799999999999875
No 483
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.15 E-value=7.1e-06 Score=101.65 Aligned_cols=44 Identities=27% Similarity=0.335 Sum_probs=35.9
Q ss_pred eeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 006548 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (641)
Q Consensus 129 vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G 174 (641)
+++..+.+++++|+|++|+|||||++++.+..... ..|.+++++
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~ 243 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDR 243 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeec
Confidence 45666789999999999999999999998765432 358998875
No 484
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.15 E-value=1.5e-06 Score=84.53 Aligned_cols=63 Identities=22% Similarity=0.212 Sum_probs=40.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----CceEEEEcCCCccCCCCCHHHHHH
Q 006548 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----YGSYGFVERETTLIGSLTVREYLY 204 (641)
Q Consensus 135 ~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~----~~~~~yv~Q~~~l~~~lTV~E~l~ 204 (641)
+||+++|+|+||||||||+++|+|++.+ +.++|.+.... ....++.+|+...++..++.+++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 68 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDAS 68 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 6999999999999999999999998754 45666543211 112344445443334444444443
No 485
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.15 E-value=5.1e-05 Score=78.63 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=30.9
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 006548 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (641)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~ 160 (641)
..|+++.+-+.+|+++.|.|++|+|||||+..++...
T Consensus 18 ~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 18 PVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred ceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4566666778899999999999999999998887543
No 486
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.14 E-value=2.6e-06 Score=83.66 Aligned_cols=72 Identities=18% Similarity=0.172 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChH-HHHhcCCEEEEEeCC
Q 006548 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST-EVFGLFDRICLLSNG 324 (641)
Q Consensus 251 GerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~-~i~~~~D~v~vL~~G 324 (641)
|+-+|..||..+..+|+.+..+| +.+||.....+.+.+++..++|.+|++.+|.... .....||.+++++.+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 78899999999999999988777 8899999999999999887667788887776532 356789999887643
No 487
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.06 E-value=9.1e-06 Score=70.21 Aligned_cols=48 Identities=27% Similarity=0.419 Sum_probs=36.9
Q ss_pred CCCCCHHHHH-HHHHHHHHH------h------CCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006548 245 MKGLPCGERR-RVRIARELV------M------RPHVLFIDEPLYHLDSVSALLMMVTLKK 292 (641)
Q Consensus 245 ~~~LSGGerq-Rv~IA~aL~------~------~P~iLlLDEPtsgLD~~~~~~i~~~L~~ 292 (641)
..++|||||| .+.++.+++ . .|++++||||+++||......++++|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 3589999994 444444332 2 3799999999999999999999999874
No 488
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.05 E-value=9.2e-06 Score=93.80 Aligned_cols=112 Identities=19% Similarity=0.178 Sum_probs=70.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhc
Q 006548 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSA-----RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (641)
Q Consensus 136 Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~-----~~~G~I~~~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (641)
.+.++|+||||+|||||+++|.+..++.. ...+-|.++|.......+. + .+-.++
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~---------------i-~~~llg---- 234 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE---------------V-TNPLLG---- 234 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH---------------H-hHHhcC----
Confidence 56799999999999999999998765321 0013355655432100000 0 011110
Q ss_pred CCCccchHHHHHHHHHHHcCCchHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 006548 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290 (641)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L 290 (641)
.......+...+.++.+|+.+..+..+ ..+||| +||||| +..||...+..+.+.|
T Consensus 235 --~~~~~~~~~a~~~l~~~gl~~~~~g~v------~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~L 289 (615)
T TIGR02903 235 --SVHDPIYQGARRDLAETGVPEPKTGLV------TDAHGG----------------VLFIDE-IGELDPLLQNKLLKVL 289 (615)
T ss_pred --CccHHHHHHHHHHHHHcCCCchhcCch------hhcCCC----------------eEEEec-cccCCHHHHHHHHHHH
Confidence 000011223455677888876665544 478888 999999 7999999999999988
Q ss_pred HH
Q 006548 291 KK 292 (641)
Q Consensus 291 ~~ 292 (641)
++
T Consensus 290 e~ 291 (615)
T TIGR02903 290 ED 291 (615)
T ss_pred hh
Confidence 75
No 489
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.04 E-value=5.5e-06 Score=66.10 Aligned_cols=35 Identities=46% Similarity=0.485 Sum_probs=27.8
Q ss_pred ceeeEEeC-CcEEEEECCCCCcHHHHHHHHHcCCCC
Q 006548 128 SSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (641)
Q Consensus 128 ~vs~~i~~-Ge~~aIiGpsGsGKSTLl~~LaG~~~~ 162 (641)
+..+.+.+ |+++.|.|+||||||||+++|.=.+-+
T Consensus 14 ~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 14 GETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred CeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34555555 679999999999999999999866544
No 490
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.00 E-value=2e-05 Score=85.08 Aligned_cols=116 Identities=21% Similarity=0.213 Sum_probs=63.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC----ceEEEEcCCCccCCCCCHHHHHHHHHHh
Q 006548 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY----GSYGFVERETTLIGSLTVREYLYYSALL 209 (641)
Q Consensus 134 ~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~~~~~----~~~~yv~Q~~~l~~~lTV~E~l~~~~~~ 209 (641)
++|.+++|.||+||||||+|++|++.+.+.....+.|.....+.+... ...+.+.|...--...+..+.+.-..+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR- 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR- 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhc-
Confidence 478999999999999999999999987432101135554444432211 124667775431112345555544322
Q ss_pred cCCCc----cchHHHHHHHHHHHc-------------CCchHHhhhhcCCCCCCCCCHHHHHHH
Q 006548 210 QLPGF----FCQRKNVVEDAIHAM-------------SLSDYANKLIGGHCYMKGLPCGERRRV 256 (641)
Q Consensus 210 ~~~~~----~~~~~~~v~~~l~~l-------------gL~~~~~~~ig~~~~~~~LSGGerqRv 256 (641)
+.|.. ..+..+.++.+++.. +..+..++.+. .+|||||--+
T Consensus 211 ~~Pd~i~vGEiRd~et~~~al~aa~tGh~v~tTlHa~~~~~~i~Rl~~------~~~~~~~~~~ 268 (358)
T TIGR02524 211 RKPHAILVGEARDAETISAALEAALTGHPVYTTLHSSGVAETIRRLVG------SFPAEERIGR 268 (358)
T ss_pred cCCCEEeeeeeCCHHHHHHHHHHHHcCCcEEEeeccCCHHHHHHHHHH------hCCccchhhH
Confidence 22321 112344456666662 33344555543 5777776444
No 491
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.00 E-value=8.7e-05 Score=72.51 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHH--HHHHHHh-CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 006548 246 KGLPCGERRRVR--IARELVM-RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 296 (641)
Q Consensus 246 ~~LSGGerqRv~--IA~aL~~-~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~ 296 (641)
..+++||+|++. +++.+-. ++++ .|+|++|.....++.+.|.++.++
T Consensus 146 Dl~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 146 DKLKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 368999999987 5555543 3444 399999999999999999988765
No 492
>PRK13764 ATPase; Provisional
Probab=97.97 E-value=3.6e-05 Score=87.79 Aligned_cols=64 Identities=16% Similarity=0.257 Sum_probs=48.5
Q ss_pred HHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeC--------------ChHHHHhcCCEEEEEeCCeE-
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ--------------SSTEVFGLFDRICLLSNGNT- 326 (641)
Q Consensus 262 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~--------------~~~~i~~~~D~v~vL~~G~i- 326 (641)
|..+|+++++||.-..-| ++++..++..|..++.|+|- ....+...+|+|+.+++|++
T Consensus 321 LR~rPD~IivGEiRd~Et-------~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G~I~ 393 (602)
T PRK13764 321 LLVRPDYTIYDEMRKTED-------FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDGEVS 393 (602)
T ss_pred HhhCCCEEEECCCCCHHH-------HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCCEEE
Confidence 678999999999985332 45555565567778888882 33467789999999999999
Q ss_pred -EEEeCh
Q 006548 327 -LFFGET 332 (641)
Q Consensus 327 -v~~G~~ 332 (641)
+|++..
T Consensus 394 ~v~~~~~ 400 (602)
T PRK13764 394 KVYDLEF 400 (602)
T ss_pred EEEeeee
Confidence 777763
No 493
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.94 E-value=0.00054 Score=70.09 Aligned_cols=190 Identities=13% Similarity=0.129 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHh
Q 006548 436 AVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGL----GHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIK 511 (641)
Q Consensus 436 ~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~l----~~~~~~~~~r~g~lff~~~~~~~~~~~~v~~~~~er~ 511 (641)
+.+.+|.++.+.|.|..+..-.+..++.|+.. ..|.+. ..+..+... ||... .+..+..+|.. -..
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~-----~f~~~--~~~~~~~~p~l--~~~ 71 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTP-----FFSLA--PWVFLFLIPAI--TMR 71 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHH-----HHHHH--HHHHHHHHHHH--HHH
Confidence 46789999999999999988888877777543 222110 111111111 11111 11111112222 225
Q ss_pred HHHhhccCCCc--------chHHHHHHHHHHHHHHHHHHHH---hhhhhhhcccc--ccccHHHHHHHHHHHHHHHHHHH
Q 006548 512 TYASEESNMHS--------GALVFLLGQLLSSIPFLFLISI---SSSLVFYFLVG--LRDEFSLLMYFVLNFFMCLLVNE 578 (641)
Q Consensus 512 vf~rE~~~~~Y--------~~~~y~la~~l~elP~~~~~~~---if~~i~Y~m~G--l~~~~~~F~~f~l~l~l~~~~~~ 578 (641)
.+.+||++|.. +...+.+||.++-+-..++..+ ++....++... -..+...++..++.+++...+..
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVYT 151 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHH
Confidence 56677777764 3477889999987655443322 22222222211 11244455545555566666788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhceecCCCCCCccccccccccccHHHHHhh
Q 006548 579 GLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIK 638 (641)
Q Consensus 579 sl~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~W~~w~~yis~~~Ya~e 638 (641)
++|.++++++.+...|..++..+... ++.|+-. ...++.+.|..|+.|+||.+|-.+
T Consensus 152 aig~~iSsl~~~q~~a~~~~~~~~~~--l~~~~~~-l~~~~~~~~~~~l~~~sp~~~~~~ 208 (240)
T TIGR03518 152 AIGLFASSLTENQIVAFIIAVFLCFL--FYFGFDG-LASLLWGGSAYTISELGLSYHYES 208 (240)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHH--HHHHHHH-HhhhcchhHHHHHHHcCHHHHHHH
Confidence 99999999999998887655443222 2223211 223322236667999999665433
No 494
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.93 E-value=8.7e-05 Score=82.73 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=43.5
Q ss_pred hCCcEEEEeCCCCCC----C-----HHHHHHHHHHHHHHH-HcCCEEEEEEeCChH-------HHHhcCCEEEEEeCCe
Q 006548 264 MRPHVLFIDEPLYHL----D-----SVSALLMMVTLKKLA-STGCTLLFTINQSST-------EVFGLFDRICLLSNGN 325 (641)
Q Consensus 264 ~~P~iLlLDEPtsgL----D-----~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~-------~i~~~~D~v~vL~~G~ 325 (641)
.+|+++++|.-++=. + ....++++..|.+++ +.|.|++++.|...+ .+.+++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 479999999876521 1 233456666777776 459999998775432 2567899999998654
No 495
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.92 E-value=9.3e-06 Score=76.27 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHHHHH-----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006548 246 KGLPCGERRRVRIARELV-----MRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293 (641)
Q Consensus 246 ~~LSGGerqRv~IA~aL~-----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l 293 (641)
..++++++++........ ..|+++ |+|++|.....++++.|.++
T Consensus 121 D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 121 DKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred hcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 357889888876665533 345555 99999999999999988764
No 496
>PRK06315 type III secretion system ATPase; Provisional
Probab=97.91 E-value=2.1e-05 Score=86.54 Aligned_cols=107 Identities=15% Similarity=0.102 Sum_probs=68.4
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCC------C--CCceEEEE---
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA---KSE------M--PYGSYGFV--- 187 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~---~~~------~--~~~~~~yv--- 187 (641)
+.++++++ +.+.+||.++|+|+||+|||||+++|+|..+... .|.|.+.|+ +.. . .....+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~--~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvva 227 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEAD--VNVIALIGERGREVREFIEGDLGEEGMKRSVIVVS 227 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCC--ceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEe
Confidence 35688988 9999999999999999999999999999875421 267777553 210 0 11223444
Q ss_pred --cCCC--ccCCCCCHHHHHHHHHHhcCCC--ccchHHHHHHHHHHHcCCc
Q 006548 188 --ERET--TLIGSLTVREYLYYSALLQLPG--FFCQRKNVVEDAIHAMSLS 232 (641)
Q Consensus 188 --~Q~~--~l~~~lTV~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~ 232 (641)
+|++ .+.+.+ +...+....+.+... ...+...++.+++++++|.
T Consensus 228 ts~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 228 TSDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 7765 344444 444444333322111 0123566788999999984
No 497
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.91 E-value=0.0002 Score=77.85 Aligned_cols=79 Identities=18% Similarity=0.283 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCcEEEEeCCCCCC-----CHHHHHHH----------HHHHHHHH-HcCCEEEEEEeCChHH
Q 006548 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHL-----DSVSALLM----------MVTLKKLA-STGCTLLFTINQSSTE 310 (641)
Q Consensus 247 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgL-----D~~~~~~i----------~~~L~~l~-~~g~tvi~t~h~~~~~ 310 (641)
+=||-.-|=..|..||=...++||+||=||+- |...+..+ .+.++.|. +.|.+.|+++-- +..
T Consensus 322 ~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Gg-sgd 400 (448)
T PF09818_consen 322 NASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGG-SGD 400 (448)
T ss_pred CCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEecc-chh
Confidence 57999999999999999999999999999975 55555544 56677775 458877776644 467
Q ss_pred HHhcCCEEEEEeCCeE
Q 006548 311 VFGLFDRICLLSNGNT 326 (641)
Q Consensus 311 i~~~~D~v~vL~~G~i 326 (641)
.+..+|+|++|++=+.
T Consensus 401 y~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 401 YFDVADRVIMMDEYRP 416 (448)
T ss_pred hHhhCCEEEEecCccc
Confidence 8899999999987653
No 498
>PRK08149 ATP synthase SpaL; Validated
Probab=97.91 E-value=1.5e-05 Score=87.52 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=48.0
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 006548 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (641)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~~~G~~~ 177 (641)
+.++++++ +.+.+||.++|+|+||+|||||+++|++...++..+.|.|-.+|.+.
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev 192 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREV 192 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccH
Confidence 45799999 99999999999999999999999999998877644558898888753
No 499
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.91 E-value=2.8e-05 Score=70.99 Aligned_cols=53 Identities=21% Similarity=0.210 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCEEEEEEeCC
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-----TGCTLLFTINQS 307 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tvi~t~h~~ 307 (641)
+..........++.++++||.-.. +......+.+.+..... .+..+|++++.+
T Consensus 73 ~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 73 VRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred HhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 344445566678999999998765 56667778888887753 467777776654
No 500
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.89 E-value=0.00015 Score=73.04 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=43.9
Q ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh--------HHHHhcCCEEEEEe
Q 006548 265 RPHVLFIDEPLY------HLDSVSALLMMVTLKKLASTGCTLLFTINQSS--------TEVFGLFDRICLLS 322 (641)
Q Consensus 265 ~P~iLlLDEPts------gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~--------~~i~~~~D~v~vL~ 322 (641)
+++++++| +.+ +.|...+..+.++++.+++.|.|+++++|... ..+..+||.|++|+
T Consensus 107 ~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 107 GASRVVID-PISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred CCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 68889999 433 44566677888899999888999999888531 23577899999994
Done!