Query 006548
Match_columns 641
No_of_seqs 350 out of 3627
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 19:20:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006548.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2173-2177//hhsearch_pdb/006548hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 1.0 1 1 354.6 28.5 222 104-337 23-253 (366)
2 3fvq_A Fe(3+) IONS import ATP- 1.0 1 1 353.6 26.9 217 105-337 4-228 (359)
3 3rlf_A Maltose/maltodextrin im 1.0 1 1 353.3 30.2 217 105-337 3-223 (381)
4 1g29_1 MALK, maltose transport 1.0 1 1 345.0 29.9 217 105-337 3-229 (372)
5 1oxx_K GLCV, glucose, ABC tran 1.0 1 1 344.2 25.8 217 105-337 3-230 (353)
6 2it1_A 362AA long hypothetical 1.0 1 1 344.0 28.0 217 105-337 3-223 (362)
7 1z47_A CYSA, putative ABC-tran 1.0 1 1 343.9 29.2 219 104-337 13-235 (355)
8 2yyz_A Sugar ABC transporter, 1.0 1 1 343.9 27.8 217 105-337 3-223 (359)
9 4f4c_A Multidrug resistance pr 1.0 1 1 343.8 19.6 218 104-337 414-641 (1321)
10 1v43_A Sugar-binding transport 1.0 1 1 343.4 25.6 217 105-337 11-231 (372)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=1.00 E-value=1 Score=354.56 Aligned_cols=222 Identities=21% Similarity=0.270 Sum_probs=192.8
Q ss_pred CEEEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCC---
Q ss_conf 55999947999912333465100020248808929999879997299999999739999998201999999727999---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~~--- 180 (641)
..+.++|+++.|..+. ....+|+|+|+.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+....
T Consensus 23 ~mi~v~~ls~~y~~~~-~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~---G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 23 HMIKLSNITKVFHQGT-RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTE---GSVLVDGQELTTLSES 98 (366)
T ss_dssp CCEEEEEEEEEEECSS-SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETTEECSSCCHH
T ss_pred CEEEEEEEEEEECCCC-CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC---EEEEECCEECCCCCHH
T ss_conf 6599984899938988-77378874699984898999995899559999999966999996---2999999998758987
Q ss_pred -----CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf -----850899828876699999999999999802998500079999999999399058753305887778889899999
Q 006548 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~~gLSGGqrqR 255 (641)
++.++|++|+..+++.+||+||+.++...... ...+.+++++++++.+||.+..++.++ .||||||||
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~-~~~~~~~~v~~lL~~vgL~~~~~~~~~------~LSGGqkQR 171 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT-PKDEVKRRVTELLSLVGLGDKHDSYPS------NLSGGQKQR 171 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTCGGGTTCCTT------TSCHHHHHH
T ss_pred HHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCCHHHCCCHH------HCCHHHHHH
T ss_conf 9998738689992787568888999999999986599-878999999999997699347619945------589999999
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECHHH
Q ss_conf 99999997199688993999999999999999999999875-98799999379388982087899982994889809257
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 256 v~IA~aL~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 334 (641)
|+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |.|||+++|+ ..++..+||++++|++|++++.|++.+
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHd-l~~~~~~aDrv~vl~~G~iv~~g~~~e 250 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE-MDVVKRICDCVAVISNGELIEQDTVSE 250 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC-HHHHHHHCSEEEEEETTEEEECCBHHH
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC-HHHHHHHCCEEEEEECCEEEEECCHHH
T ss_conf 9999999669999999798756899999999999999997379999999568-999999699999998998999758999
Q ss_pred HHH
Q ss_conf 988
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
++.
T Consensus 251 v~~ 253 (366)
T 3tui_C 251 VFS 253 (366)
T ss_dssp HHS
T ss_pred HHH
T ss_conf 971
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=1.00 E-value=1 Score=353.61 Aligned_cols=217 Identities=22% Similarity=0.332 Sum_probs=189.2
Q ss_pred EEEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEEC----C-C
Q ss_conf 5999947999912333465100020248808929999879997299999999739999998201999999727----9-9
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS----E-M 179 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~----~-~ 179 (641)
.+.++|+++.|. ...+|+|+|+.+++||+++|+|||||||||||++|+|+.+|++ |+|.++|++. . .
T Consensus 4 ~l~i~~ls~~y~-----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~---G~I~i~G~~i~~~~~~~ 75 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-----NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDS---GEISLSGKTIFSKNTNL 75 (359)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSE---EEEEETTEEEESSSCBC
T ss_pred EEEEEEEEEEEC-----CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC---CEEEECCEECCCCCCCC
T ss_conf 899996999989-----9888975389995998999999998059999999966998997---38999999975455665
Q ss_pred --CCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf --985089982887669999999999999980299850007999999999939905875330588777888989999999
Q 006548 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (641)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~~gLSGGqrqRv~ 257 (641)
..+.++||+|+..++|++||+||+.|+...+.. ...+.+++++++++.++|.+..++.++ .|||||||||+
T Consensus 76 ~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~-~~~~~~~~v~~~l~~~gL~~~~~r~~~------~LSGGq~QRVa 148 (359)
T 3fvq_A 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKG-RTAQERQRIEAMLELTGISELAGRYPH------ELSGGQQQRAA 148 (359)
T ss_dssp CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSC-CSHHHHHHHHHHHHHHTCGGGTTSCGG------GSCHHHHHHHH
T ss_pred CHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCCHHHCCCHH------HCCHHHHHHHH
T ss_conf 54108889990787578999999999999987699-868999999999988699037558924------57999999999
Q ss_pred HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECHHHHH
Q ss_conf 9999971996889939999999999999999999998-759879999937938898208789998299488980925798
Q 006548 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (641)
Q Consensus 258 IA~aL~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~-~~g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 336 (641)
|||||+.+|++|||||||++||+.++..+.+.|+++. +.|.|+|+++|+ ..++..++|++++|++|+++..|++.++.
T Consensus 149 lArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd-~~ea~~~aDri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 149 LARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD-REEALQYADRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCC-HHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC-HHHHHHHCCEEEEEECCEEEEEECHHHHH
T ss_conf 99999739999999697436799999999999999998579989999499-99999879999999899899981899997
Q ss_pred H
Q ss_conf 8
Q 006548 337 Q 337 (641)
Q Consensus 337 ~ 337 (641)
.
T Consensus 228 ~ 228 (359)
T 3fvq_A 228 R 228 (359)
T ss_dssp H
T ss_pred H
T ss_conf 4
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=1.00 E-value=1 Score=353.27 Aligned_cols=217 Identities=28% Similarity=0.395 Sum_probs=191.8
Q ss_pred EEEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCC---CC
Q ss_conf 599994799991233346510002024880892999987999729999999973999999820199999972799---98
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~---~~ 181 (641)
.+.++|+++.|. ...+|+|+|+.+++||+++|+|||||||||||++|+|+.+|++ |+|.++|++... ..
T Consensus 3 ~l~~~~l~~~yg-----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~---G~I~i~G~~~~~~~~~~ 74 (381)
T 3rlf_A 3 SVQLQNVTKAWG-----EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS---GDLFIGEKRMNDTPPAE 74 (381)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETTEECTTCCGGG
T ss_pred EEEEEEEEEEEC-----CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC---EEEEECCEECCCCCHHH
T ss_conf 899984899989-----9999965689987998999996899559999999976998897---19999999998799778
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 50899828876699999999999999802998500079999999999399058753305887778889899999999999
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~~gLSGGqrqRv~IA~a 261 (641)
+.++||+|+..++|.+||+||+.|....+.. ...+.+++++++++.++|.+..++.+. .||||||||++|||+
T Consensus 75 r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~r~p~------~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGA-KKEVINQRVNQVAEVLQLAHLLDRKPK------ALSGGQRQRVAIGRT 147 (381)
T ss_dssp SCEEEECTTCCCCTTSCHHHHHTHHHHHTTC-CHHHHHHHHHHHHHHTTCGGGTTCCGG------GSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCCHHHCCCHH------HCCHHHHHHHHHHHH
T ss_conf 8889990687578999999999999977599-989999999999988599416539925------799999999999999
Q ss_pred HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECHHHHHH
Q ss_conf 97199688993999999999999999999999875-98799999379388982087899982994889809257988
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 337 (641)
|+.+|++|+|||||++||+..+..+.+.|+++.++ |.|+|+++| +..++..++|++++|++|+++..|++.++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTH-d~~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH-DQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECS-CHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEC-CHHHHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 981999999989876799999999999999999867988999988-9999998699999998998999838999971
No 4
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=1.00 E-value=1 Score=345.00 Aligned_cols=217 Identities=24% Similarity=0.351 Sum_probs=189.8
Q ss_pred EEEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECC------
Q ss_conf 59999479999123334651000202488089299998799972999999997399999982019999997279------
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~------ 178 (641)
.+.++|+++.|. .+.+|+++|+.+++||+++|+|||||||||||++|+|+.+|++ |+|.++|.+..
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i~g~~~~~~~~~~ 74 (372)
T 1g29_1 3 GVRLVDVWKVFG-----EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSR---GQIYIGDKLVADPEKGI 74 (372)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSE---EEEEETTEEEEEGGGTE
T ss_pred EEEEEEEEEEEC-----CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC---CEEEECCEECCCCCCCC
T ss_conf 899996999989-----9888831389996998999999999379999999976998996---38999999986544434
Q ss_pred -C--CCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf -9--9850899828876699999999999999802998500079999999999399058753305887778889899999
Q 006548 179 -M--PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (641)
Q Consensus 179 -~--~~~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~~gLSGGqrqR 255 (641)
. ..+.++||+|+..++|++||+||+.|....+.. ...+.+++++++++.++|.+..++.++ .||||||||
T Consensus 75 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~r~~~------~LSGGq~QR 147 (372)
T 1g29_1 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKV-PRQEIDQRVREVAELLGLTELLNRKPR------ELSGGQRQR 147 (372)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHTCGGGTTCCGG------GSCHHHHHH
T ss_pred CCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCCHHHCCCCC------CCCHHHHHH
T ss_conf 5887679889992787568998899999999977599-979999999999998799137608911------299999999
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECHHH
Q ss_conf 99999997199688993999999999999999999999875-98799999379388982087899982994889809257
Q 006548 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (641)
Q Consensus 256 v~IA~aL~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 334 (641)
++|||+|+.+|++|+|||||++||+.++..+.+.|+++.++ |.|+|+++|+ ..++..++|++++|++|+++..|++.+
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD-QVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC-HHHHHHHCCEEEEEECCEEEEECCHHH
T ss_conf 9999998658999998798756899999999999999998659899998899-899998699999995998998489999
Q ss_pred HHH
Q ss_conf 988
Q 006548 335 CLQ 337 (641)
Q Consensus 335 ~~~ 337 (641)
+..
T Consensus 227 l~~ 229 (372)
T 1g29_1 227 VYD 229 (372)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 973
No 5
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=1.00 E-value=1 Score=344.22 Aligned_cols=217 Identities=24% Similarity=0.342 Sum_probs=188.5
Q ss_pred EEEEEEEEEEEECCCCCCCC--EEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECC----
Q ss_conf 59999479999123334651--000202488089299998799972999999997399999982019999997279----
Q 006548 105 SVVWKDLTVTIKGKRRYSDK--VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---- 178 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~--iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~---- 178 (641)
.+.++|+++.|. .+. +|+++|+.+++||+++|+|||||||||||++|+|+.+|++ |+|.++|.+..
T Consensus 3 ~l~i~~l~~~y~-----~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i~g~~i~~~~~ 74 (353)
T 1oxx_K 3 RIIVKNVSKVFK-----KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST---GELYFDDRLVASNGK 74 (353)
T ss_dssp CEEEEEEEEEEG-----GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSE---EEEEETTEEEEETTE
T ss_pred EEEEEEEEEEEC-----CEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCC---EEEEECCEECCCCCC
T ss_conf 899986999989-----982014813489997998999997999709999999967998884---099999999865554
Q ss_pred --C--CCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf --9--985089982887669999999999999980299850007999999999939905875330588777888989999
Q 006548 179 --M--PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (641)
Q Consensus 179 --~--~~~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~~gLSGGqrq 254 (641)
. .++.++||+|+..++|++||+||+.|....+. ....+.+++++++++.++|.+..++.++ .|||||||
T Consensus 75 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~~~~~------~LSGGq~Q 147 (353)
T 1oxx_K 75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK-MSKEEIRKRVEEVAKILDIHHVLNHFPR------ELSGAQQQ 147 (353)
T ss_dssp ESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS-CCHHHHHHHHHHHHHHTTCGGGTTSCGG------GSCHHHHH
T ss_pred CCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCCHHHCCCHH------HCCHHHHH
T ss_conf 5687643978999478746799899999999998759-9989999999999988699037509935------69999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECHH
Q ss_conf 999999997199688993999999999999999999999875-9879999937938898208789998299488980925
Q 006548 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 255 Rv~IA~aL~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 333 (641)
|++|||+|+.+|++|+|||||++||+.++..+.+.|+++.++ |.|+|+++|+. .++..++|++++|++|+++..|++.
T Consensus 148 RvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~ 226 (353)
T 1oxx_K 148 RVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPE 226 (353)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHCCEEEEEECCEEEEECCHH
T ss_conf 999999997099999997974348999999999999999986699899992899-9999869999999899899976999
Q ss_pred HHHH
Q ss_conf 7988
Q 006548 334 ACLQ 337 (641)
Q Consensus 334 ~~~~ 337 (641)
++..
T Consensus 227 ~l~~ 230 (353)
T 1oxx_K 227 DLYD 230 (353)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9974
No 6
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=1.00 E-value=1 Score=344.01 Aligned_cols=217 Identities=25% Similarity=0.374 Sum_probs=189.9
Q ss_pred EEEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCC---CC
Q ss_conf 599994799991233346510002024880892999987999729999999973999999820199999972799---98
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~---~~ 181 (641)
.+.++|+++.|. .+.+|+++|+.+++||+++|+|||||||||||++|+|+.+|++ |+|.++|.+... ..
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i~g~~i~~~~~~~ 74 (362)
T 2it1_A 3 EIKLENIVKKFG-----NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTS---GKIYFDEKDVTELPPKD 74 (362)
T ss_dssp CEEEEEEEEESS-----SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETTEECTTSCGGG
T ss_pred EEEEEEEEEEEC-----CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC---EEEEECCEECCCCCHHH
T ss_conf 799996999989-----9788975589997998999999999359999999966998885---09999999998699757
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 50899828876699999999999999802998500079999999999399058753305887778889899999999999
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~~gLSGGqrqRv~IA~a 261 (641)
+.++||+|+..++|++||+||+.|....+.. ...+.+++++++++.++|.+..++.++ .||||||||++|||+
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~r~~~------~LSGGq~QRvalArA 147 (362)
T 2it1_A 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKA-PREEIDKKVREVAKMLHIDKLLNRYPW------QLSGGQQQRVAIARA 147 (362)
T ss_dssp TTEEEECTTCCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHTTCTTCTTCCGG------GSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCCHHHHCCHH------HCCHHHHHHHHHHHH
T ss_conf 8489994676457898799999999876489-879999999999988599047608930------389999999999999
Q ss_pred HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECHHHHHH
Q ss_conf 97199688993999999999999999999999875-98799999379388982087899982994889809257988
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 337 (641)
|+.+|++|+|||||++||+.++..+.+.|+++.++ |.|+|+++|+ ..++..++|++++|++|+++..|++.++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD-QAEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC-HHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9729999999895436899999999999999997579899998888-899998699999998998999769999973
No 7
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=1.00 E-value=1 Score=343.92 Aligned_cols=219 Identities=25% Similarity=0.378 Sum_probs=190.9
Q ss_pred CEEEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCC---C
Q ss_conf 5599994799991233346510002024880892999987999729999999973999999820199999972799---9
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---P 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~---~ 180 (641)
..+.++|+++.|+ ..+.+|+|+|+.+++||+++|+|||||||||||++|+|+.+|++ |+|.++|.+... .
T Consensus 13 ~~l~~~~l~~~y~----g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i~g~~i~~~~~~ 85 (355)
T 1z47_A 13 MTIEFVGVEKIYP----GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTK---GDVWIGGKRVTDLPPQ 85 (355)
T ss_dssp EEEEEEEEEECCT----TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSE---EEEEETTEECTTCCGG
T ss_pred CEEEEEEEEEEEC----CCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCC---CEEEECCEECCCCCHH
T ss_conf 6699997999975----99789963489997997999998999709999999967998896---1999999999868764
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 85089982887669999999999999980299850007999999999939905875330588777888989999999999
Q 006548 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (641)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~~gLSGGqrqRv~IA~ 260 (641)
++.++||+|+..++|++||+||+.|....+.. ...+.+++++++++.++|.++.++.++ .||||||||++|||
T Consensus 86 ~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~-~~~~~~~~v~~~l~~~gL~~~~~r~~~------~LSGGq~QRvalAr 158 (355)
T 1z47_A 86 KRNVGLVFQNYALFQHMTVYDNVSFGLREKRV-PKDEMDARVRELLRFMRLESYANRFPH------ELSGGQQQRVALAR 158 (355)
T ss_dssp GSSEEEECGGGCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHTTCGGGTTSCGG------GSCHHHHHHHHHHH
T ss_pred HCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCHHHHCCCCC------CCCHHHHHHHHHHH
T ss_conf 57489992686357898899999999977499-878999999999987699458609920------18999999999999
Q ss_pred HHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECHHHHHH
Q ss_conf 997199688993999999999999999999999875-98799999379388982087899982994889809257988
Q 006548 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 337 (641)
+|+.+|++|+|||||++||+.++..+.+.|+++.++ |.|+|+++|+ ..++..++|++++|++|+++..|++.++..
T Consensus 159 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 159 ALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD-QEEALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp HHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSC-HHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC-HHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99739998999697436899999999999999998669999999799-999998699999998999999859999974
No 8
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=343.89 Aligned_cols=217 Identities=23% Similarity=0.352 Sum_probs=188.7
Q ss_pred EEEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCC---CC
Q ss_conf 599994799991233346510002024880892999987999729999999973999999820199999972799---98
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~---~~ 181 (641)
.+.++|+++.|. .+.+|+++|+.+++||+++|+|||||||||||++|+|+.+|++ |+|.++|.+... ..
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i~g~~i~~~~~~~ 74 (359)
T 2yyz_A 3 SIRVVNLKKYFG-----KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTS---GEIYFDDVLVNDIPPKY 74 (359)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSE---EEEEETTEECTTSCGGG
T ss_pred EEEEEEEEEEEC-----CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC---CEEEECCEECCCCCHHH
T ss_conf 899997999989-----9888965589986998999996898239999999977998896---29999999998798645
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 50899828876699999999999999802998500079999999999399058753305887778889899999999999
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~~gLSGGqrqRv~IA~a 261 (641)
+.++||+|+..++|++||+||+.|....+. ....+.+++++++++.++|.+..++.++ .||||||||++|||+
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~r~~~------~LSgGq~QRvalArA 147 (359)
T 2yyz_A 75 REVGMVFQNYALYPHMTVFENIAFPLRARR-ISKDEVEKRVVEIARKLLIDNLLDRKPT------QLSGGQQQRVALARA 147 (359)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHGGGSSSC-SHHHHTTHHHHHHHHHTTCGGGTTSCGG------GSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCCHHHCCCHH------HCCHHHHHHHHHHHH
T ss_conf 848999068645799889999999997659-9879999999999988699537628934------699999999999999
Q ss_pred HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECHHHHHH
Q ss_conf 97199688993999999999999999999999875-98799999379388982087899982994889809257988
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 337 (641)
|+.+|++|+|||||++||+.++..+.+.|+++.++ |.|+|+++|+. .++..++|++++|++|+++..|++.++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 97199989998975368999999999999999985699899991899-99998699999998998999679999973
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=343.84 Aligned_cols=218 Identities=21% Similarity=0.287 Sum_probs=189.9
Q ss_pred CEEEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCC---
Q ss_conf 55999947999912333465100020248808929999879997299999999739999998201999999727999---
Q 006548 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (641)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~~--- 180 (641)
..++++|+++.|+.. ..+.+|+|+|+.+++|+.+||+||||||||||+++|.|..+|.+ |+|.+||.+....
T Consensus 414 g~I~~~nvsF~Y~~~--~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~---G~I~idG~~i~~~~~~ 488 (1321)
T 4f4c_A 414 GDITVENVHFTYPSR--PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLK---GKITIDGVDVRDINLE 488 (1321)
T ss_dssp CCEEEEEEEECCSSS--TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSE---EEEEETTEETTTSCHH
T ss_pred CCEEEEEEEEECCCC--CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCC---CCCCCCCCCCHHCCHH
T ss_conf 767999855407999--98743333188622882789980589857788887545651644---8615799650112599
Q ss_pred --CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCC-----CCCCHHHH
Q ss_conf --85089982887669999999999999980299850007999999999939905875330588777-----88898999
Q 006548 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM-----KGLPCGER 253 (641)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~-----~gLSGGqr 253 (641)
++.++||+|++.++ +.|++||+.|+. + ...++++.++++..+++++.+.++.|+++. ..||||||
T Consensus 489 ~lr~~i~~v~Q~~~Lf-~~TI~eNI~~g~----~---~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQk 560 (1321)
T 4f4c_A 489 FLRKNVAVVSQEPALF-NCTIEENISLGK----E---GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQK 560 (1321)
T ss_dssp HHHHHEEEECSSCCCC-SEEHHHHHHTTC----T---TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHH
T ss_pred HHHHCCCCCCCCCEEE-CCCHHHHHHHHC----C---CCHHHHHHHHHHHCCCHHHHHCCCCCCCCEECCCCCCCCHHHH
T ss_conf 9850466658753320-786167886415----5---2209999999987565468870888886075589887777787
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECHH
Q ss_conf 99999999971996889939999999999999999999998759879999937938898208789998299488980925
Q 006548 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (641)
Q Consensus 254 qRv~IA~aL~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 333 (641)
||++||||++.+|+||+||||||+||+.++..+.+.|+++.+ |+|+|+.+|+.+ ....+|+|++|++|++++.|+.+
T Consensus 561 QRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~ 637 (1321)
T 4f4c_A 561 QRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHR 637 (1321)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEECCCHH--HHHHCCEEEEEECCEEECCCCHH
T ss_conf 999999987259998998455446887899999999999847-988999736387--89868989996399651368999
Q ss_pred HHHH
Q ss_conf 7988
Q 006548 334 ACLQ 337 (641)
Q Consensus 334 ~~~~ 337 (641)
+..+
T Consensus 638 eL~~ 641 (1321)
T 4f4c_A 638 ALMA 641 (1321)
T ss_dssp HHHT
T ss_pred HHHH
T ss_conf 9998
No 10
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=1.00 E-value=1 Score=343.37 Aligned_cols=217 Identities=25% Similarity=0.348 Sum_probs=189.0
Q ss_pred EEEEEEEEEEEECCCCCCCCEEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCC---CC
Q ss_conf 599994799991233346510002024880892999987999729999999973999999820199999972799---98
Q 006548 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (641)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~~~~Ge~~aIiGpsGsGKSTLl~~LaG~~~~~~~~~G~I~i~G~~~~~---~~ 181 (641)
.+.++|+++.|. .+.+|+++|+.+++||+++|+|||||||||||++|+|+.+|++ |+|.++|.+... ..
T Consensus 11 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~---G~I~i~g~~i~~~~~~~ 82 (372)
T 1v43_A 11 EVKLENLTKRFG-----NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE---GRIYFGDRDVTYLPPKD 82 (372)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEETTEECTTSCGGG
T ss_pred EEEEEEEEEEEC-----CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC---EEEEECCEECCCCCHHH
T ss_conf 699998999989-----9788865489997998999999999869999999976998884---09999999998798656
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 50899828876699999999999999802998500079999999999399058753305887778889899999999999
Q 006548 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (641)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~a~l~~~~~~~~~~~~v~~~l~~lgL~~~~~~~igg~~~~~gLSGGqrqRv~IA~a 261 (641)
+.++||+|+..++|++||+||+.|....+. ....+.+++++++++.++|.+..++.++ .||||||||++|||+
T Consensus 83 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~r~~~------~LSGGq~QRvalArA 155 (372)
T 1v43_A 83 RNISMVFQSYAVWPHMTVYENIAFPLKIKK-FPKDEIDKRVRWAAELLQIEELLNRYPA------QLSGGQRQRVAVARA 155 (372)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC--C-CCHHHHHHHHHHHHHHTTCGGGTTSCTT------TCCSSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCHHHHCCCHH------HCCHHHHHHHHHHHH
T ss_conf 858999167645799889999998887648-9879999999999998599248639910------399999999999999
Q ss_pred HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECCHHHHHHCCCEEEEEECCEEEEEECHHHHHH
Q ss_conf 97199688993999999999999999999999875-98799999379388982087899982994889809257988
Q 006548 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (641)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~s~~~i~~~L~~l~~~-g~tvi~tih~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 337 (641)
|+.+|++|+|||||++||+.++..+.+.|+++.++ |.|+|+++|+ ..++..++|++++|++|+++..|++.++..
T Consensus 156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD-QVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC-HHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9619999997198745799999999999999997289889999499-999998699999998998998589999973
Done!