Query 006549
Match_columns 641
No_of_seqs 237 out of 799
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 00:54:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1032 Uncharacterized conser 100.0 7.9E-47 1.7E-51 424.9 25.4 474 64-640 103-583 (590)
2 PF02893 GRAM: GRAM domain; I 99.7 1E-17 2.2E-22 139.0 5.4 67 68-134 1-69 (69)
3 smart00568 GRAM domain in gluc 99.6 2.1E-15 4.5E-20 122.2 6.8 59 75-133 1-60 (61)
4 KOG4347 GTPase-activating prot 98.5 4.5E-08 9.7E-13 110.0 4.0 106 64-173 7-116 (671)
5 KOG1032 Uncharacterized conser 98.5 1.3E-07 2.9E-12 108.1 6.4 311 65-451 248-580 (590)
6 PF14844 PH_BEACH: PH domain a 97.5 0.00023 5.1E-09 63.8 7.0 86 81-167 1-105 (106)
7 PF14470 bPH_3: Bacterial PH d 97.5 0.0022 4.8E-08 55.7 12.1 85 76-163 1-87 (96)
8 PF10698 DUF2505: Protein of u 96.7 0.14 3E-06 49.5 17.3 150 286-448 4-159 (159)
9 cd01201 Neurobeachin Neurobeac 95.0 0.1 2.2E-06 47.5 7.7 89 80-169 1-104 (108)
10 cd08868 START_STARD1_3_like Ch 90.3 11 0.00025 37.6 15.4 149 284-445 51-206 (208)
11 PF11696 DUF3292: Protein of u 90.1 0.84 1.8E-05 53.1 7.8 84 84-170 519-634 (642)
12 cd08905 START_STARD1-like Chol 87.9 15 0.00033 37.0 14.3 147 285-445 53-207 (209)
13 cd08904 START_STARD6-like Lipi 87.3 21 0.00045 36.2 14.8 145 283-441 48-200 (204)
14 cd08906 START_STARD3-like Chol 86.3 36 0.00078 34.4 16.0 142 284-446 52-208 (209)
15 cd05018 CoxG Carbon monoxide d 86.2 25 0.00055 31.7 14.4 58 383-446 84-141 (144)
16 PF00407 Bet_v_1: Pathogenesis 84.4 40 0.00086 32.4 16.1 143 283-450 6-150 (151)
17 cd08876 START_1 Uncharacterize 83.5 34 0.00074 33.4 14.1 144 283-443 43-193 (195)
18 cd08871 START_STARD10-like Lip 83.3 51 0.0011 33.3 15.6 88 365-456 121-215 (222)
19 PF11605 Vps36_ESCRT-II: Vacuo 81.1 4.6 0.0001 35.6 6.1 59 77-135 12-75 (89)
20 PF06115 DUF956: Domain of unk 80.3 6.5 0.00014 36.5 7.0 76 91-169 18-96 (118)
21 PF10805 DUF2730: Protein of u 79.9 3.6 7.9E-05 37.3 5.2 46 594-639 49-96 (106)
22 KOG4471 Phosphatidylinositol 3 78.7 6.9 0.00015 45.2 8.0 100 68-169 28-134 (717)
23 PF04102 SlyX: SlyX; InterPro 76.1 5.6 0.00012 33.3 4.9 41 595-635 12-52 (69)
24 PRK09039 hypothetical protein; 74.0 4 8.8E-05 44.5 4.5 71 545-639 26-98 (343)
25 cd00890 Prefoldin Prefoldin is 73.8 6.2 0.00013 36.1 5.1 43 592-634 85-127 (129)
26 cd07821 PYR_PYL_RCAR_like Pyra 73.8 65 0.0014 28.6 13.4 106 284-416 4-112 (140)
27 PF06713 bPH_4: Bacterial PH d 72.0 18 0.00039 30.5 7.1 64 102-169 5-72 (74)
28 PRK00295 hypothetical protein; 71.6 11 0.00024 31.6 5.6 41 595-635 13-53 (68)
29 PRK02793 phi X174 lysis protei 71.3 10 0.00022 32.2 5.4 41 595-635 16-56 (72)
30 smart00338 BRLZ basic region l 70.4 8.7 0.00019 31.4 4.7 38 595-632 27-64 (65)
31 cd08874 START_STARD9-like C-te 70.3 98 0.0021 31.4 13.2 121 284-416 48-176 (205)
32 COG4687 Uncharacterized protei 69.5 7.7 0.00017 35.6 4.5 67 93-160 20-87 (122)
33 cd07823 SRPBCC_5 Ligand-bindin 68.1 1E+02 0.0022 28.5 14.2 44 380-427 82-127 (146)
34 PRK04325 hypothetical protein; 67.1 14 0.0003 31.5 5.4 41 595-635 17-57 (74)
35 PF02996 Prefoldin: Prefoldin 66.9 9 0.0002 34.7 4.6 42 592-633 75-116 (120)
36 PRK04406 hypothetical protein; 66.2 15 0.00032 31.5 5.3 41 595-635 19-59 (75)
37 PRK02119 hypothetical protein; 66.1 15 0.00032 31.3 5.4 41 595-635 17-57 (73)
38 PRK00736 hypothetical protein; 65.3 17 0.00036 30.5 5.4 41 595-635 13-53 (68)
39 PRK00846 hypothetical protein; 65.2 16 0.00036 31.5 5.4 40 596-635 22-61 (77)
40 cd00177 START Lipid-binding ST 63.9 1.3E+02 0.0029 28.4 12.9 121 284-418 42-167 (193)
41 smart00234 START in StAR and p 63.9 1.5E+02 0.0033 29.0 15.8 148 285-446 49-202 (206)
42 cd08870 START_STARD2_7-like Li 62.4 1.7E+02 0.0038 29.2 13.5 150 285-446 54-208 (209)
43 cd08911 START_STARD7-like Lipi 61.9 1.5E+02 0.0032 29.8 12.6 151 285-446 49-206 (207)
44 cd08869 START_RhoGAP C-termina 61.6 1.2E+02 0.0026 30.2 11.9 117 285-419 48-171 (197)
45 PF02050 FliJ: Flagellar FliJ 58.5 27 0.00058 30.7 6.0 47 594-640 52-98 (123)
46 cd08903 START_STARD5-like Lipi 55.0 2.4E+02 0.0051 28.4 16.7 151 285-446 50-207 (208)
47 PRK10724 hypothetical protein; 53.9 2.1E+02 0.0046 27.6 13.5 36 386-425 97-132 (158)
48 PF13600 DUF4140: N-terminal d 51.6 15 0.00032 32.7 3.1 39 597-635 66-104 (104)
49 PRK00888 ftsB cell division pr 51.5 35 0.00076 31.0 5.5 37 599-635 32-68 (105)
50 PF11932 DUF3450: Protein of u 50.7 29 0.00062 36.0 5.5 40 599-638 40-79 (251)
51 PF06698 DUF1192: Protein of u 49.3 21 0.00046 29.3 3.3 30 591-620 18-47 (59)
52 TIGR02473 flagell_FliJ flagell 49.3 41 0.00088 31.1 5.8 46 595-640 69-114 (141)
53 smart00683 DM16 Repeats in sea 48.2 30 0.00065 28.0 4.0 35 96-131 19-53 (55)
54 cd01220 PH_CDEP Chondrocyte-de 47.4 1.8E+02 0.004 25.9 9.4 60 96-156 17-80 (99)
55 PF04707 PRELI: PRELI-like fam 47.0 2.7E+02 0.0059 26.8 14.3 90 355-449 61-152 (157)
56 PRK09841 cryptic autophosphory 46.8 30 0.00064 41.6 5.5 33 592-624 265-297 (726)
57 PRK03947 prefoldin subunit alp 45.6 44 0.00096 31.4 5.5 44 592-635 92-135 (140)
58 PF04283 CheF-arch: Chemotaxis 45.5 57 0.0012 33.5 6.6 36 94-133 24-59 (221)
59 cd01264 PH_melted Melted pleck 45.2 53 0.0011 29.7 5.6 58 100-157 24-85 (101)
60 PHA03231 glycoprotein BALF4; P 44.6 13 0.00028 44.9 2.1 53 521-578 684-742 (829)
61 PRK11519 tyrosine kinase; Prov 43.9 34 0.00073 41.1 5.4 34 592-625 265-298 (719)
62 PRK03100 sec-independent trans 43.3 45 0.00096 31.9 5.0 48 593-640 27-75 (136)
63 cd01244 PH_RasGAP_CG9209 RAS_G 43.1 70 0.0015 28.6 6.0 53 101-154 27-80 (98)
64 cd04766 HTH_HspR Helix-Turn-He 43.0 40 0.00087 29.3 4.4 42 589-631 37-88 (91)
65 PF01852 START: START domain; 42.2 3.3E+02 0.0072 26.4 15.0 144 285-447 50-203 (206)
66 cd08910 START_STARD2-like Lipi 40.6 3.9E+02 0.0085 26.8 14.0 145 285-446 53-206 (207)
67 cd08872 START_STARD11-like Cer 39.9 3.3E+02 0.0072 28.1 11.3 78 369-451 138-231 (235)
68 PF07289 DUF1448: Protein of u 39.8 99 0.0022 33.9 7.6 100 75-175 18-129 (339)
69 cd00584 Prefoldin_alpha Prefol 39.8 57 0.0012 30.1 5.2 42 592-633 85-126 (129)
70 PF00170 bZIP_1: bZIP transcri 39.7 69 0.0015 26.0 5.1 32 599-630 31-62 (64)
71 cd00632 Prefoldin_beta Prefold 39.6 61 0.0013 29.0 5.2 44 592-635 61-104 (105)
72 cd08908 START_STARD12-like C-t 38.4 4.4E+02 0.0096 26.8 11.9 118 285-419 56-178 (204)
73 PF06005 DUF904: Protein of un 38.2 81 0.0018 26.8 5.3 39 595-633 19-64 (72)
74 smart00233 PH Pleckstrin homol 37.8 1.4E+02 0.003 24.1 6.9 64 99-164 22-91 (102)
75 cd04789 HTH_Cfa Helix-Turn-Hel 37.7 77 0.0017 28.3 5.5 50 587-637 35-100 (102)
76 PF07798 DUF1640: Protein of u 37.4 67 0.0015 31.6 5.5 40 599-638 56-104 (177)
77 PF08567 TFIIH_BTF_p62_N: TFII 37.4 62 0.0013 27.9 4.6 64 87-155 6-78 (79)
78 PRK10803 tol-pal system protei 36.9 52 0.0011 34.6 4.9 39 595-633 55-93 (263)
79 PF04484 DUF566: Family of unk 36.7 65 0.0014 34.8 5.7 42 596-637 182-226 (311)
80 cd01233 Unc104 Unc-104 pleckst 36.0 1.2E+02 0.0027 26.6 6.5 67 101-168 24-92 (100)
81 PF07716 bZIP_2: Basic region 35.7 81 0.0018 24.9 4.7 30 607-636 24-53 (54)
82 TIGR00293 prefoldin, archaeal 35.6 68 0.0015 29.5 4.9 40 592-631 84-123 (126)
83 PF04156 IncA: IncA protein; 35.4 76 0.0016 31.2 5.6 33 608-640 158-190 (191)
84 cd01218 PH_phafin2 Phafin2 Pl 34.7 2E+02 0.0042 26.1 7.6 65 92-157 15-82 (104)
85 PF04380 BMFP: Membrane fusoge 34.6 66 0.0014 27.7 4.3 30 607-636 49-78 (79)
86 PF05278 PEARLI-4: Arabidopsis 34.3 78 0.0017 33.6 5.6 39 595-633 167-211 (269)
87 TIGR01010 BexC_CtrB_KpsE polys 34.2 58 0.0013 35.4 4.9 33 592-624 168-200 (362)
88 COG3461 Uncharacterized conser 34.1 43 0.00094 29.8 3.1 43 593-635 30-78 (103)
89 PF08614 ATG16: Autophagy prot 33.8 82 0.0018 31.4 5.6 41 596-636 125-165 (194)
90 PF04340 DUF484: Protein of un 33.5 45 0.00099 33.9 3.7 27 595-621 41-67 (225)
91 PF03317 ELF: ELF protein; In 33.1 55 0.0012 33.1 4.1 44 593-636 238-281 (284)
92 KOG0526 Nucleosome-binding fac 32.7 1.4E+02 0.0031 34.5 7.6 81 88-174 10-92 (615)
93 PF04977 DivIC: Septum formati 32.5 90 0.002 25.8 4.8 35 600-634 16-50 (80)
94 PRK00888 ftsB cell division pr 32.2 85 0.0018 28.5 4.9 35 601-635 27-61 (105)
95 PF07334 IFP_35_N: Interferon- 32.0 58 0.0013 28.1 3.5 29 599-627 5-33 (76)
96 TIGR03017 EpsF chain length de 31.9 43 0.00093 37.3 3.5 35 592-626 169-203 (444)
97 cd08907 START_STARD8-like C-te 31.6 3.2E+02 0.0069 28.0 9.3 51 366-419 126-179 (205)
98 PF08512 Rtt106: Histone chape 31.5 2.5E+02 0.0054 24.8 7.7 75 86-169 4-83 (95)
99 PRK14011 prefoldin subunit alp 31.0 89 0.0019 30.1 5.0 41 591-631 85-125 (144)
100 cd08867 START_STARD4_5_6-like 30.8 5.4E+02 0.012 25.5 14.8 80 359-440 117-201 (206)
101 cd08877 START_2 Uncharacterize 28.8 5.9E+02 0.013 25.4 13.0 149 283-445 48-213 (215)
102 TIGR01005 eps_transp_fam exopo 28.8 49 0.0011 39.7 3.5 36 591-626 191-226 (754)
103 PF03703 bPH_2: Bacterial PH d 28.6 1.9E+02 0.0042 23.4 6.2 68 99-167 5-77 (80)
104 PF00169 PH: PH domain; Inter 28.4 3.3E+02 0.0073 22.3 8.5 63 99-163 21-92 (104)
105 PRK07720 fliJ flagellar biosyn 28.2 1.4E+02 0.003 28.2 5.9 45 596-640 73-117 (146)
106 PF06017 Myosin_TH1: Myosin ta 27.7 2.2E+02 0.0048 28.4 7.5 103 67-175 34-147 (199)
107 COG3132 Uncharacterized protei 27.7 87 0.0019 31.3 4.3 23 613-635 190-212 (215)
108 PRK13729 conjugal transfer pil 27.6 89 0.0019 35.7 5.0 38 595-632 77-121 (475)
109 PF08172 CASP_C: CASP C termin 27.5 1.1E+02 0.0025 32.0 5.5 41 598-638 90-131 (248)
110 PF14584 DUF4446: Protein of u 27.5 37 0.0008 32.9 1.7 34 599-632 44-77 (151)
111 PF05377 FlaC_arch: Flagella a 27.5 1.2E+02 0.0027 24.6 4.4 35 602-636 1-35 (55)
112 PF07289 DUF1448: Protein of u 27.4 2.8E+02 0.0061 30.5 8.5 97 75-175 150-255 (339)
113 KOG0971 Microtubule-associated 26.5 90 0.0019 38.3 4.9 44 592-635 292-345 (1243)
114 PRK09039 hypothetical protein; 26.2 99 0.0021 33.9 5.0 41 596-636 118-158 (343)
115 TIGR02338 gimC_beta prefoldin, 26.2 1.4E+02 0.003 27.1 5.2 43 592-634 65-107 (110)
116 PF10805 DUF2730: Protein of u 26.1 1.1E+02 0.0023 27.8 4.4 44 592-635 33-78 (106)
117 PF08286 Spc24: Spc24 subunit 25.7 23 0.0005 32.6 0.0 40 599-638 4-43 (118)
118 PF09738 DUF2051: Double stran 25.6 1.3E+02 0.0028 32.5 5.6 45 593-637 125-169 (302)
119 PF12958 DUF3847: Protein of u 25.3 1.4E+02 0.003 26.4 4.7 33 603-635 3-35 (86)
120 PF07352 Phage_Mu_Gam: Bacteri 25.0 1.3E+02 0.0027 28.8 4.9 46 592-637 1-54 (149)
121 PRK04406 hypothetical protein; 24.8 2.1E+02 0.0046 24.4 5.7 41 599-639 9-57 (75)
122 cd00821 PH Pleckstrin homology 24.4 3.6E+02 0.0078 21.3 8.6 64 98-163 19-86 (96)
123 TIGR03752 conj_TIGR03752 integ 24.3 2.4E+02 0.0052 32.4 7.5 46 588-633 53-98 (472)
124 cd04781 HTH_MerR-like_sg6 Heli 24.1 1.6E+02 0.0035 26.9 5.3 47 590-637 37-103 (120)
125 PF14257 DUF4349: Domain of un 23.7 1.1E+02 0.0023 31.9 4.5 30 608-637 162-191 (262)
126 COG2867 Oligoketide cyclase/li 23.4 1.7E+02 0.0036 28.4 5.3 65 375-446 77-141 (146)
127 cd08909 START_STARD13-like C-t 23.2 7.8E+02 0.017 25.0 10.4 51 366-419 126-179 (205)
128 PRK13182 racA polar chromosome 23.2 1E+02 0.0022 30.7 4.0 21 587-607 34-54 (175)
129 cd08861 OtcD1_ARO-CYC_like N-t 23.1 5.5E+02 0.012 23.0 13.7 33 383-418 81-113 (142)
130 TIGR03495 phage_LysB phage lys 22.8 1.9E+02 0.0042 27.6 5.6 42 596-637 14-55 (135)
131 PF12808 Mto2_bdg: Micro-tubul 22.7 1.2E+02 0.0025 24.4 3.4 24 611-634 25-48 (52)
132 PF08317 Spc7: Spc7 kinetochor 22.4 1.7E+02 0.0037 31.6 5.9 43 596-638 137-179 (325)
133 PF14182 YgaB: YgaB-like prote 22.1 1.2E+02 0.0026 26.4 3.6 24 614-637 39-62 (79)
134 cd04775 HTH_Cfa-like Helix-Tur 22.0 1.7E+02 0.0038 26.0 4.9 47 590-637 38-100 (102)
135 TIGR03007 pepcterm_ChnLen poly 22.0 1E+02 0.0022 35.0 4.2 34 592-625 159-192 (498)
136 KOG3215 Uncharacterized conser 21.9 1.3E+02 0.0028 30.8 4.4 32 605-639 96-127 (222)
137 KOG0250 DNA repair protein RAD 21.9 1.2E+02 0.0026 37.9 4.9 50 590-639 368-418 (1074)
138 PRK09343 prefoldin subunit bet 21.8 1.9E+02 0.004 26.9 5.2 42 593-634 70-111 (121)
139 PRK05689 fliJ flagellar biosyn 21.7 2.2E+02 0.0047 26.8 5.8 45 596-640 73-117 (147)
140 PF04156 IncA: IncA protein; 21.6 1.1E+02 0.0023 30.1 3.8 46 590-635 77-122 (191)
141 cd07824 SRPBCC_6 Ligand-bindin 21.6 6.3E+02 0.014 23.1 14.7 27 386-416 86-112 (146)
142 TIGR00293 prefoldin, archaeal 21.4 2E+02 0.0044 26.3 5.4 38 599-636 84-121 (126)
143 COG5509 Uncharacterized small 21.4 1.1E+02 0.0025 25.2 3.2 23 595-617 26-48 (65)
144 KOG2483 Upstream transcription 21.4 1.1E+02 0.0024 31.8 4.0 43 596-638 96-142 (232)
145 PF10359 Fmp27_WPPW: RNA pol I 21.2 1.2E+02 0.0027 34.6 4.7 25 596-620 165-189 (475)
146 KOG2196 Nuclear porin [Nuclear 21.1 1.4E+02 0.0031 31.2 4.6 38 601-638 113-150 (254)
147 TIGR00219 mreC rod shape-deter 21.1 46 0.001 35.4 1.2 7 536-542 3-9 (283)
148 PF14916 CCDC92: Coiled-coil d 21.1 2E+02 0.0044 23.8 4.6 30 611-640 6-36 (60)
149 PF10186 Atg14: UV radiation r 20.7 1.7E+02 0.0038 30.3 5.4 35 599-633 68-102 (302)
150 PF01814 Hemerythrin: Hemeryth 20.6 1.9E+02 0.0041 25.3 4.9 36 602-637 48-93 (133)
151 PRK02119 hypothetical protein; 20.5 2.9E+02 0.0064 23.4 5.7 41 599-639 7-55 (73)
152 PRK03947 prefoldin subunit alp 20.4 2.1E+02 0.0046 26.7 5.4 38 599-636 92-129 (140)
153 PF06632 XRCC4: DNA double-str 20.4 1.7E+02 0.0037 32.2 5.3 41 594-634 130-170 (342)
154 PF04065 Not3: Not1 N-terminal 20.3 2E+02 0.0044 29.9 5.6 47 592-638 120-186 (233)
155 PRK10963 hypothetical protein; 20.0 1.1E+02 0.0024 31.3 3.6 26 595-620 38-63 (223)
No 1
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=100.00 E-value=7.9e-47 Score=424.89 Aligned_cols=474 Identities=24% Similarity=0.345 Sum_probs=349.5
Q ss_pred hhhhhhhhhhCC--CCCCCeeeeEEEEEEeecceeceEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCC
Q 006549 64 TLRSEEYRQLFR--LPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPN 141 (641)
Q Consensus 64 ~~rn~~F~~lF~--LP~~E~Li~~f~CaL~r~i~l~GrLYIS~~~iCF~S~ifg~~tk~~Ip~~dI~~I~K~kta~i~pn 141 (641)
...+..|+..|. +|++|.|+.+|+|||+|.|++|||||++++||||||++|||.++++|||.+|+.|+|.++|+++||
T Consensus 103 ~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~tag~fpn 182 (590)
T KOG1032|consen 103 LLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKTAGIFPN 182 (590)
T ss_pred hhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhhccCCCc
Confidence 566778888883 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCeEEEEeccCCHHHHHHHHHHHHHhcCCCCCCccccccCCCCCCCCCCCcccccccccCCCCCCCCCCccccc
Q 006549 142 AIEIFAAGKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKVNCCSADPIAKSDSIIRE 221 (641)
Q Consensus 142 aI~I~T~~~k~~F~SF~~RD~ay~~I~~~w~~~~~~~~~~~eq~~~~s~~ss~~ng~v~~e~~~ss~~~~~s~~~~~dr~ 221 (641)
||+|.|.+.+|+|+||.+||.+|.+|..+-+......+. .. .+.++.. ....+.+. ..+++
T Consensus 183 ~i~i~t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s---------~~--~~~~~l~-----~~~~~~~~---~~~~~ 243 (590)
T KOG1032|consen 183 AIEITTGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGS---------PR--ADSDYLS-----SVEPEVND---DQQGN 243 (590)
T ss_pred ceEEecCCCcceeeecccCccHHHHHHHhhhhcccccCC---------cc--ccchhcc-----cCCCCcCc---ccccc
Confidence 999999999999999999999999885443322110000 00 0000000 00000000 00000
Q ss_pred ccCCCCCCCCCccCCCCccccCCCccccccCcccCCCCCCCCCCcCCCCCC----CCCCCCcccceeeeeEEecCHHHHH
Q 006549 222 EDLSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENS----DAPKIPECYTKVAETNFQMKVEDFY 297 (641)
Q Consensus 222 ~~~S~~s~~p~~v~st~~~d~~~n~~~~~~~v~~~d~~~~~~~f~~~~ed~----~~p~~pe~~~~v~e~~fpisv~~~F 297 (641)
. +.. ..+.. .+ ..++...++. -...++...-++.+..|++++..||
T Consensus 244 ~----~~~------~~~s~-~~-------------------~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~ 293 (590)
T KOG1032|consen 244 V----DNS------QSPSA-LQ-------------------NSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFF 293 (590)
T ss_pred c----ccC------CCccc-cc-------------------cccCCCccccccccccccccccccccccccccccccccc
Confidence 0 000 00000 00 0000000000 0012223334778899999999999
Q ss_pred hhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEEeeeeccCCceeeeeEEEEEEEecCCe-EEEEEeEe
Q 006549 298 SLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVYRNSH-LVIETSQE 376 (641)
Q Consensus 298 ~lLFgD~s~~F~~~f~~~~g~~di~~spW~~~~~~~~~R~isY~~pl~~piGPK~t~c~e~Qki~~~~~~~-~VVetst~ 376 (641)
+++|+|+ .|+..+.+.++..++...+|.....+...|.++|++++..+.|||.+.|..+|++.+++... |.+..++.
T Consensus 294 ~~lf~d~--~~~~~~l~~~~~~~vs~~~~~~~~~~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~ 371 (590)
T KOG1032|consen 294 SLLFGDN--TFFFFFLEDQDEIQVSPIPWKGPRSGILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETL 371 (590)
T ss_pred eeeccCc--ceeeeccccccccccccccccCCCccceeEeccCCccCCCcCCCccccccceeeEEeccchhhhhhhheec
Confidence 9999976 47788899999999999999988888899999999999999999999999999998886654 77888999
Q ss_pred eCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeecccccchhccchHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 006549 377 VHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHDVLKQKNLEKP 456 (641)
Q Consensus 377 t~DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~wv~~a~e~lk~~~~e~~ 456 (641)
+++||||++|.|.+||+|.|.+. ..|+|+++..|.|.|++|.+.+++..+. ..+.+++...++++ +.|+.
T Consensus 372 ~~~vps~~~f~v~~~y~i~~~~~---~~~~l~v~~~V~~~~~sw~~~~~~~~~~-----~~k~lv~~~~~~~~--~~e~~ 441 (590)
T KOG1032|consen 372 TPDVPSGDSFYVKTRYLISRAGS---NSCKLKVSTSVEWTKSSWDVPVSEIGSN-----TLKDLVEILEKLLE--NGEEL 441 (590)
T ss_pred cCCccccceeeeeEEEEEEecCC---cceeecceeEEEeccCchhhcccccccc-----chhhHHHHHHHHHh--ccHHH
Confidence 99999999999999999999853 4999999999999999999999998776 44444555555544 11111
Q ss_pred CCCCCCccccccccccccceeccccccccccccCCccccccccccccccccccccccccccchhHHHHHHHHHHhhhhcc
Q 006549 457 EEGGPAYSTVQNDDVHSERVVNTGETSERLCNADHRIRTLPITDSLDASQSVGNLLQGNLVDSAAIASLLRESMTKCCSF 536 (641)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (641)
.+..++ +.+.+.+++ +..+.. .|-.+ .-..++|.|.+..+.
T Consensus 442 ~~~~~~---------------~~~~~~~~~---~~~v~~------------~~~~v---------~~~~~~~~~~~~i~~ 482 (590)
T KOG1032|consen 442 AKNQEK---------------EDELTYEGS---PWEVEK------------PGGTV---------RQLSYKEVWNKPISP 482 (590)
T ss_pred HHhhcc---------------cccccccCC---CccccC------------CCcee---------eeecccccccccccc
Confidence 111111 000000111 000110 01000 011244557777888
Q ss_pred ccccCCceeehhhHHHHHHHHhheeeeeecCCCceeecCCCcccCCCccccCCCCCCcchHHHHHHhhhhhhHHHHHHHH
Q 006549 537 VKRQSGVSLILVIAFAVIFLMQVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEAR 616 (641)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (641)
.+++.+...+.+.+...|++|+..|+.|...|-.-+.+.|.+|- .+...+..-..+..|+++|++.||+.|.+|.+.
T Consensus 483 ~~~~~~~~~i~~l~~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~---~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~ 559 (590)
T KOG1032|consen 483 DKREVTLLQVVVLVPLKILWLLNTILFLHDVPFGSYFEVHERYR---EALDETSKVKTTLVWVSFRIEWLKDIKMEARKI 559 (590)
T ss_pred ccccceeEEEEEEehhhhhHHHHHHhhccCCCCccceeeehhhh---hhhcccchhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999888888999999999999999999999999994 344566677889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHhhhc
Q 006549 617 LERMWHEHAVLRAQLKDIEQLHKR 640 (641)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~ 640 (641)
.+.||...+.|+..+..||+|.++
T Consensus 560 k~~~r~~~~~l~~~~~~l~~~~~~ 583 (590)
T KOG1032|consen 560 KQILRNDQDLLEVLFSLLEKLSQS 583 (590)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998753
No 2
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=99.70 E-value=1e-17 Score=139.01 Aligned_cols=67 Identities=39% Similarity=0.910 Sum_probs=48.6
Q ss_pred hhhhhhCCCCCCCeeeeEEEEEEee-cceeceEEEEecceEEEEeccCCcee-EEEEeccccccccccc
Q 006549 68 EEYRQLFRLPSEEVLVQDFNCAFQE-SILLQGHMYLFVHFICFYSNIFGFET-KKIIPFYEVTAVRRAK 134 (641)
Q Consensus 68 ~~F~~lF~LP~~E~Li~~f~CaL~r-~i~l~GrLYIS~~~iCF~S~ifg~~t-k~~Ip~~dI~~I~K~k 134 (641)
++||++|+||.+|.|+.+|.|+|++ +++.+|+||||++||||+|+.++..+ +++|||.||.+|+|.+
T Consensus 1 ~~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~~ 69 (69)
T PF02893_consen 1 EKFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKET 69 (69)
T ss_dssp ----------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE-
T ss_pred CcccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEeC
Confidence 4799999999999999999999998 89999999999999999999999888 9999999999999863
No 3
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=99.59 E-value=2.1e-15 Score=122.18 Aligned_cols=59 Identities=32% Similarity=0.649 Sum_probs=56.8
Q ss_pred CCCCCCeeeeEEEEEEeecceeceEEEEecceEEEEeccCCcee-EEEEecccccccccc
Q 006549 75 RLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFET-KKIIPFYEVTAVRRA 133 (641)
Q Consensus 75 ~LP~~E~Li~~f~CaL~r~i~l~GrLYIS~~~iCF~S~ifg~~t-k~~Ip~~dI~~I~K~ 133 (641)
+||++|.|+++|.|+|+++++++||||||++||||+|+.+|+.+ +++||+.||..|+|.
T Consensus 1 ~l~~~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~ 60 (61)
T smart00568 1 KLPEEEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKS 60 (61)
T ss_pred CcCCCcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEEC
Confidence 48999999999999999999999999999999999999999988 999999999999986
No 4
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=98.54 E-value=4.5e-08 Score=109.98 Aligned_cols=106 Identities=26% Similarity=0.418 Sum_probs=93.3
Q ss_pred hhhhhhhhhhCCCCCCCeeeeEEEEEEee---cceeceEEEEecceEEEEeccCCceeEEEEeccccccccccccccccC
Q 006549 64 TLRSEEYRQLFRLPSEEVLVQDFNCAFQE---SILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFP 140 (641)
Q Consensus 64 ~~rn~~F~~lF~LP~~E~Li~~f~CaL~r---~i~l~GrLYIS~~~iCF~S~ifg~~tk~~Ip~~dI~~I~K~kta~i~p 140 (641)
+.++++| .+|+|| |.|..+-.|.++. ....+||||+|++++||.|-... .+.+++|+..|..|++.+....++
T Consensus 7 r~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~-~c~~~~Pl~~vr~ve~~~~ss~~~ 82 (671)
T KOG4347|consen 7 RLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEW-LCSFITPLLAVRSVERLDDSSLFT 82 (671)
T ss_pred hhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcc-cceEeeehhhhhhhhccCccccch
Confidence 5788899 999999 9999999999985 45699999999999999998754 589999999999999999778899
Q ss_pred CeEEEEecC-eEEEEeccCCHHHHHHHHHHHHHh
Q 006549 141 NAIEIFAAG-KKYFFASFLSRDEAFKLITDGWLQ 173 (641)
Q Consensus 141 naI~I~T~~-~k~~F~SF~~RD~ay~~I~~~w~~ 173 (641)
+.|.+.|.+ ..+.|..+.+|+..+-.|...-..
T Consensus 83 ~~i~~~~~~~~~~~f~~~~~r~~~~~k~~~~~~~ 116 (671)
T KOG4347|consen 83 QLISLFTSNMVGMRFGGLTERLKLLSKLHLPPAR 116 (671)
T ss_pred hhhHHhhcCcceEEecchhhHHHHHHHHhchHhh
Confidence 999998876 789999999999988777754433
No 5
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=98.50 E-value=1.3e-07 Score=108.09 Aligned_cols=311 Identities=15% Similarity=0.179 Sum_probs=170.5
Q ss_pred hhhhhhhhhCCCCCCCeeeeEEEEEEeecceeceEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCC-eE
Q 006549 65 LRSEEYRQLFRLPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPN-AI 143 (641)
Q Consensus 65 ~rn~~F~~lF~LP~~E~Li~~f~CaL~r~i~l~GrLYIS~~~iCF~S~ifg~~tk~~Ip~~dI~~I~K~kta~i~pn-aI 143 (641)
..+..|+..|++|++|.+..+|+|.+.+..+++|+++++-...|||+.+||..+++...|+++..++-.......+. ++
T Consensus 248 ~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~~~~~ 327 (590)
T KOG1032|consen 248 QSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGPRSGI 327 (590)
T ss_pred CCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCCCccc
Confidence 56778999999999999999999999999999999999999999999999999999999999999988765433321 11
Q ss_pred EEE--ec-----------------CeEEEEeccCCHHHHHHHHHHHHHhcCCCCCCccccccCCCCCCCCCCCccccccc
Q 006549 144 EIF--AA-----------------GKKYFFASFLSRDEAFKLITDGWLQHGSGSLASAEQQDSSSETSSPQNGPVVIEKV 204 (641)
Q Consensus 144 ~I~--T~-----------------~~k~~F~SF~~RD~ay~~I~~~w~~~~~~~~~~~eq~~~~s~~ss~~ng~v~~e~~ 204 (641)
... +. ...+.|.++... |+.+........ . +.+.-++..
T Consensus 328 ~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~---~~vls~t~~~~v------------p----s~~~f~v~~--- 385 (590)
T KOG1032|consen 328 LLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKY---FRVLSETLTPDV------------P----SGDSFYVKT--- 385 (590)
T ss_pred eeEeccCCccCCCcCCCccccccceeeEEeccchhh---hhhhheeccCCc------------c----ccceeeeeE---
Confidence 111 10 112222222211 222111100000 0 000000000
Q ss_pred ccCCCCCCCCCCcccccccCCCCCCCCCccCCCCccccCCCccccccCcccCCCCCCCCCCcCCCCCCCCCCCCccccee
Q 006549 205 NCCSADPIAKSDSIIREEDLSSDSKLPANVEMTPVEMQDDNVEQDFEPVLDTDSLHPIKTSSWNIENSDAPKIPECYTKV 284 (641)
Q Consensus 205 ~ss~~~~~s~~~~~dr~~~~S~~s~~p~~v~st~~~d~~~n~~~~~~~v~~~d~~~~~~~f~~~~ed~~~p~~pe~~~~v 284 (641)
...-.+ .+++..+-.... ...|... .-.-.+.+.+.
T Consensus 386 -----------~y~i~~--------------------~~~~~~~l~v~~----------~V~~~~~-sw~~~~~~~~~-- 421 (590)
T KOG1032|consen 386 -----------RYLISR--------------------AGSNSCKLKVST----------SVEWTKS-SWDVPVSEIGS-- 421 (590)
T ss_pred -----------EEEEEe--------------------cCCcceeeccee----------EEEeccC-chhhccccccc--
Confidence 000000 000000000000 0000000 00001111111
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEEeeeeccCCceeeeeEEEEEEEe
Q 006549 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRVY 364 (641)
Q Consensus 285 ~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~~g~~di~~spW~~~~~~~~~R~isY~~pl~~piGPK~t~c~e~Qki~~~ 364 (641)
...++.++. |+-+|++. .-..+-+.+.++..+..++|.....++..|...|.-.-..++++.....+..|....-
T Consensus 422 --~~~k~lv~~-~~~~~~~~--e~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~i~~~~~~~~~~~i~~l~ 496 (590)
T KOG1032|consen 422 --NTLKDLVEI-LEKLLENG--EELAKNQEKEDELTYEGSPWEVEKPGGTVRQLSYKEVWNKPISPDKREVTLLQVVVLV 496 (590)
T ss_pred --cchhhHHHH-HHHHHhcc--HHHHHhhcccccccccCCCccccCCCceeeeeccccccccccccccccceeEEEEEEe
Confidence 122333333 33445533 2234444455666777779996667889999988864455566766666666655444
Q ss_pred -cCCeEEEEEeEeeCCCCCCCceEEEEEEEEEecCCCC-CCceEEEEEEEEEEeecccccchhccchHHHHHHHHHHHHH
Q 006549 365 -RNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGS-KEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIG 442 (641)
Q Consensus 365 -~~~~~VVetst~t~DVPYGD~F~Ve~R~~It~~~~~s-k~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~wv~ 442 (641)
.+..|++++.+..+|+|||++|.|+.||. ....... ...+.+.++..+.|.|. -+++....+........+.+
T Consensus 497 ~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~-~~~~~~~~v~~~~~~~~~~~~~l~~----~~~~~~~~k~~~r~~~~~l~ 571 (590)
T KOG1032|consen 497 PLKILWLLNTILFLHDVPFGSYFEVHERYR-EALDETSKVKTTLVWVSFRIEWLKD----IKMEARKIKQILRNDQDLLE 571 (590)
T ss_pred hhhhhHHHHHHhhccCCCCccceeeehhhh-hhhcccchhhhhhHHHHHHHHHHHH----HHHHHhhhHHHHHHHHHHHH
Confidence 44678889999999999999999999996 2111000 01233333444444443 44444444555555556666
Q ss_pred HHHHHHhhc
Q 006549 443 MAHDVLKQK 451 (641)
Q Consensus 443 ~a~e~lk~~ 451 (641)
++..+++..
T Consensus 572 ~~~~~l~~~ 580 (590)
T KOG1032|consen 572 VLFSLLEKL 580 (590)
T ss_pred HHHHHHHHH
Confidence 666555544
No 6
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=97.53 E-value=0.00023 Score=63.84 Aligned_cols=86 Identities=20% Similarity=0.347 Sum_probs=61.0
Q ss_pred eeeeEEEEEEee-cceeceEEEEecceEEEEec---------------cCCceeEEEEeccccccccccccccccCCeEE
Q 006549 81 VLVQDFNCAFQE-SILLQGHMYLFVHFICFYSN---------------IFGFETKKIIPFYEVTAVRRAKTAGIFPNAIE 144 (641)
Q Consensus 81 ~Li~~f~CaL~r-~i~l~GrLYIS~~~iCF~S~---------------ifg~~tk~~Ip~~dI~~I~K~kta~i~pnaI~ 144 (641)
+++-.+.|.+.. .....|+|.|++++|+|..+ .-.......+|+.||..|.+..- .+-++||+
T Consensus 1 ~i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRy-llr~~AlE 79 (106)
T PF14844_consen 1 KILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRY-LLRDTALE 79 (106)
T ss_dssp --SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEE-TTEEEEEE
T ss_pred CEEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHh-cCcceEEE
Confidence 356789999985 45689999999999999976 22234567899999999998864 56789999
Q ss_pred EEecCeEEEEeccC---CHHHHHHHH
Q 006549 145 IFAAGKKYFFASFL---SRDEAFKLI 167 (641)
Q Consensus 145 I~T~~~k~~F~SF~---~RD~ay~~I 167 (641)
|...+++=+|-.|. .||++|+.|
T Consensus 80 iF~~dg~s~f~~F~~~~~R~~v~~~l 105 (106)
T PF14844_consen 80 IFFSDGRSYFFNFESKKERDEVYNKL 105 (106)
T ss_dssp EEETTS-EEEEE-SSHHHHHHHHCCS
T ss_pred EEEcCCcEEEEEcCCHHHHHHHHHhh
Confidence 99976554444664 588887644
No 7
>PF14470 bPH_3: Bacterial PH domain
Probab=97.46 E-value=0.0022 Score=55.74 Aligned_cols=85 Identities=22% Similarity=0.282 Sum_probs=71.1
Q ss_pred CCCCCeeeeEEEEEEee-cceeceEEEEecceEEEEecc-CCceeEEEEeccccccccccccccccCCeEEEEecCeEEE
Q 006549 76 LPSEEVLVQDFNCAFQE-SILLQGHMYLFVHFICFYSNI-FGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYF 153 (641)
Q Consensus 76 LP~~E~Li~~f~CaL~r-~i~l~GrLYIS~~~iCF~S~i-fg~~tk~~Ip~~dI~~I~K~kta~i~pnaI~I~T~~~k~~ 153 (641)
|.++|.++....|.+.. .-...|-+++|+..|-|+..- ++......|||++|.+|+..++ ++.+.|.|.++++++.
T Consensus 1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g--~~~~~i~i~~~~~~~~ 78 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKG--ILGGKITIETNGEKIK 78 (96)
T ss_pred CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEcc--ccccEEEEEECCEEEE
Confidence 56899999999998873 234679999999999999764 6668889999999999999864 5678999999999999
Q ss_pred EeccCCHHHH
Q 006549 154 FASFLSRDEA 163 (641)
Q Consensus 154 F~SF~~RD~a 163 (641)
|.++ +.+++
T Consensus 79 i~~i-~k~~~ 87 (96)
T PF14470_consen 79 IDNI-QKGDV 87 (96)
T ss_pred EEEc-CHHHH
Confidence 9999 55444
No 8
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=96.66 E-value=0.14 Score=49.46 Aligned_cols=150 Identities=16% Similarity=0.165 Sum_probs=99.1
Q ss_pred eeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEEee-eec-----cCCceeeeeEEE
Q 006549 286 ETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPI-KVY-----FGAKFGSCKETQ 359 (641)
Q Consensus 286 e~~fpisv~~~F~lLFgD~s~~F~~~f~~~~g~~di~~spW~~~~~~~~~R~isY~~pl-~~p-----iGPK~t~c~e~Q 359 (641)
...|++|++++|.+|... .|++.-++..|..+..+..-....++ ....+.=..|- +.| |-+..-...+++
T Consensus 4 ~~~~~~~~~~v~~~~~d~---~y~~~r~~~~g~~~~~~~~~~~~~~g-~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e 79 (159)
T PF10698_consen 4 SVEYPAPVERVWAAFTDE---DYWEARCAALGADNAEVESFEVDGDG-VRVTVRQTVPADKLPSAARKFVGGDLRVTRTE 79 (159)
T ss_pred EEEcCCCHHHHHHHHcCH---HHHHHHHHHcCCCCceEEEEEEcCCe-EEEEEEEecChhhCCHHHHHhcCCCeEEEEEE
Confidence 468999999999996543 57787777777756666655554443 22222222332 122 222223455555
Q ss_pred EEEEecCCeEEEEEeEeeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeecccccchhccchHHHHHHHHHH
Q 006549 360 KFRVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAM 439 (641)
Q Consensus 360 ki~~~~~~~~VVetst~t~DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~ 439 (641)
+....++..+-.+.....+ |.-..+.....+...+ ++|++.+...|+- |=+++-++||+.+.+.+.+.+..
T Consensus 80 ~w~~~~~g~~~g~~~~~~~----G~P~~~~G~~~L~~~~----~gt~~~~~g~v~v-~VPlvGgkiE~~v~~~~~~~~~~ 150 (159)
T PF10698_consen 80 TWTPLDDGRRTGTFTVSIP----GAPVSISGTMRLRPDG----GGTRLTVEGEVKV-KVPLVGGKIEKAVAENLRKLLEA 150 (159)
T ss_pred EEecCCCCeEEEEEEEEec----CceEEEEEEEEEecCC----CCEEEEEEEEEEE-EEccccHHHHHHHHHHHHHHHHH
Confidence 5533345566655555545 5557789999998743 3899999888876 55799999999999999998888
Q ss_pred HHHHHHHHH
Q 006549 440 WIGMAHDVL 448 (641)
Q Consensus 440 wv~~a~e~l 448 (641)
-.+.+.++|
T Consensus 151 e~~~~~~wl 159 (159)
T PF10698_consen 151 EQEFTAEWL 159 (159)
T ss_pred HHHHHHhhC
Confidence 777766654
No 9
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=95.01 E-value=0.1 Score=47.51 Aligned_cols=89 Identities=18% Similarity=0.296 Sum_probs=66.7
Q ss_pred CeeeeEEEEEEee-cceeceEEEEecceEEEEec----cCC-c---------eeEEEEeccccccccccccccccCCeEE
Q 006549 80 EVLVQDFNCAFQE-SILLQGHMYLFVHFICFYSN----IFG-F---------ETKKIIPFYEVTAVRRAKTAGIFPNAIE 144 (641)
Q Consensus 80 E~Li~~f~CaL~r-~i~l~GrLYIS~~~iCF~S~----ifg-~---------~tk~~Ip~~dI~~I~K~kta~i~pnaI~ 144 (641)
|+++-+..|.+.. -.-..|++=||..+|+|.-. .+. . .....+++++|..|.+..- .+-+.|++
T Consensus 1 ~~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRy-lLr~~alE 79 (108)
T cd01201 1 GPVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRY-LLQNTALE 79 (108)
T ss_pred CCeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhh-hcccceEE
Confidence 5678889999875 34578999999999999952 111 1 1223789999999999864 56788999
Q ss_pred EEecCeEEEEeccCCHHHHHHHHHH
Q 006549 145 IFAAGKKYFFASFLSRDEAFKLITD 169 (641)
Q Consensus 145 I~T~~~k~~F~SF~~RD~ay~~I~~ 169 (641)
|.-.+..-+|-+|.+++.+...+..
T Consensus 80 iF~~d~~~~f~~F~~~~~~k~vv~~ 104 (108)
T cd01201 80 LFLASRTSIFFAFPDQNAVKKVVYA 104 (108)
T ss_pred EEEeCCceEEEEeCcHHHHHHHHhh
Confidence 9877655555589988887776653
No 10
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=90.27 E-value=11 Score=37.58 Aligned_cols=149 Identities=12% Similarity=0.067 Sum_probs=73.8
Q ss_pred eeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEEee---eeccCCceeeeeEEEE
Q 006549 284 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPI---KVYFGAKFGSCKETQK 360 (641)
Q Consensus 284 v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~~g~~di~~spW~~~~~~~~~R~isY~~pl---~~piGPK~t~c~e~Qk 360 (641)
-.+.++++|++++|..++.|.. ...++...+...+ .-..- +..++ +.|...- ..++.+. .....++
T Consensus 51 k~~~~i~~~~~~v~~~l~~d~~--~~~~Wd~~~~~~~-----~i~~~-d~~~~-i~y~~~~~~~~~~vs~R--DfV~~r~ 119 (208)
T cd08868 51 RLTGVLDCPAEFLYNELVLNVE--SLPSWNPTVLECK-----IIQVI-DDNTD-ISYQVAAEAGGGLVSPR--DFVSLRH 119 (208)
T ss_pred EEEEEEcCCHHHHHHHHHcCcc--ccceecCcccceE-----EEEEe-cCCcE-EEEEEecCcCCCccccc--ceEEEEE
Confidence 3567899999999998886642 1111111111100 00000 11222 3332111 1122222 2222333
Q ss_pred EEEecCCeEEEEEeEeeCCCCCCC-ceEE---EEEEEEEecCCCCCCceEEEEEEEEEEeecccccchhccchHHHHHHH
Q 006549 361 FRVYRNSHLVIETSQEVHDVPYGD-YFRV---EGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDV 436 (641)
Q Consensus 361 i~~~~~~~~VVetst~t~DVPYGD-~F~V---e~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~ 436 (641)
....++..+++..+...+..|-.. +-++ .+.|.|++.+.+. ++|.+...+.+...+ .+=+..+.+.+....-+.
T Consensus 120 ~~~~~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~-~~t~v~~~~~~Dp~G-~iP~~lvN~~~~~~~~~~ 197 (208)
T cd08868 120 WGIRENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNP-NKCNFTWLLNTDLKG-WLPQYLVDQALASVLLDF 197 (208)
T ss_pred EEecCCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCC-CceEEEEEEEECCCC-CCcceeeehhhHHHHHHH
Confidence 333343333344444445666444 3444 4779999975432 489999888888854 333445555555555566
Q ss_pred HHHHHHHHH
Q 006549 437 YAMWIGMAH 445 (641)
Q Consensus 437 ~~~wv~~a~ 445 (641)
++.+-+.+.
T Consensus 198 ~~~Lr~~~~ 206 (208)
T cd08868 198 MKHLRKRIA 206 (208)
T ss_pred HHHHHHHHh
Confidence 555555443
No 11
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=90.13 E-value=0.84 Score=53.07 Aligned_cols=84 Identities=18% Similarity=0.394 Sum_probs=64.9
Q ss_pred eEEEEEEeecceeceEEEEe----cceEEEEeccC---C---------ceeEEEEeccccccccccccccc---------
Q 006549 84 QDFNCAFQESILLQGHMYLF----VHFICFYSNIF---G---------FETKKIIPFYEVTAVRRAKTAGI--------- 138 (641)
Q Consensus 84 ~~f~CaL~r~i~l~GrLYIS----~~~iCF~S~if---g---------~~tk~~Ip~~dI~~I~K~kta~i--------- 138 (641)
-.|.|-|+++ .|++||+ .=.|||.+.-. + ...-..||..||.+++|..+.+.
T Consensus 519 v~F~AR~~Gk---kG~v~I~ssa~~P~l~Ftt~~~~~~~d~~~~~~~~~~~~wsv~V~dI~elkKvgGlGWK~KLvVGWa 595 (642)
T PF11696_consen 519 VEFPARYKGK---KGHVYIDSSATPPVLSFTTDKTSSLGDLRLEEREKGHPLWSVPVADIAELKKVGGLGWKGKLVVGWA 595 (642)
T ss_pred eeeeeecCCc---cceEEEecCCCCcEEEEeccCccccccccccccccCceeeEEEhHHhhhhhhcccccceeeEEEeee
Confidence 3699999876 4999998 45789987511 1 23458999999999999865432
Q ss_pred -----cCCeEEEE-ec-CeEEEEeccCCHHHHHHHHHHH
Q 006549 139 -----FPNAIEIF-AA-GKKYFFASFLSRDEAFKLITDG 170 (641)
Q Consensus 139 -----~pnaI~I~-T~-~~k~~F~SF~~RD~ay~~I~~~ 170 (641)
+-.|+.|. +. ++.|.++....||+.|+.|..+
T Consensus 596 ~g~kEv~DGL~I~g~~~g~~y~lTA~~~RDeLFNRLiAm 634 (642)
T PF11696_consen 596 LGEKEVVDGLVIVGDEPGQEYHLTAMPRRDELFNRLIAM 634 (642)
T ss_pred cCCcccccceEEeccCCCCEEEEEecchHHHHHHHHHhc
Confidence 23588898 54 6899999999999999999853
No 12
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=87.90 E-value=15 Score=37.04 Aligned_cols=147 Identities=8% Similarity=0.006 Sum_probs=77.6
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCC-CceeEEEEEEEeeeec---cCCceeeeeEEEE
Q 006549 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYE-FGYSRDLSFQHPIKVY---FGAKFGSCKETQK 360 (641)
Q Consensus 285 ~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~~g~~di~~spW~~~~~-~~~~R~isY~~pl~~p---iGPK~t~c~e~Qk 360 (641)
.+.+++++++++|..+|.|.. ...++.. .+..-..-+. +..+. +.|..-...| +.+.. ....+.
T Consensus 53 ~e~~i~~~~~~l~~~l~~d~e--~~~~W~~-------~~~~~~vl~~id~~~~-i~y~~~~p~p~~~vs~RD--~V~~~~ 120 (209)
T cd08905 53 LEVVVDQPLDNLYSELVDRME--QMGEWNP-------NVKEVKILQRIGKDTL-ITHEVAAETAGNVVGPRD--FVSVRC 120 (209)
T ss_pred EEEEecCCHHHHHHHHHhchh--hhceecc-------cchHHHHHhhcCCCce-EEEEEeccCCCCccCccc--eEEEEE
Confidence 678999999999988887632 1111111 1111000000 11122 3333222222 22332 222333
Q ss_pred EEEecCCeEEEEEeEeeCCCC-CCCceEE---EEEEEEEecCCCCCCceEEEEEEEEEEeecccccchhccchHHHHHHH
Q 006549 361 FRVYRNSHLVIETSQEVHDVP-YGDYFRV---EGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDV 436 (641)
Q Consensus 361 i~~~~~~~~VVetst~t~DVP-YGD~F~V---e~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~ 436 (641)
....++.++++..+...+..| .-++-++ .+.|.+++.+.++ ++|++...+.+...+ .+=+.++.+-..+..-+.
T Consensus 121 ~~~~~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~-~~t~v~~~~~~DpkG-~iP~~lvN~~~~~~~~~~ 198 (209)
T cd08905 121 AKRRGSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDP-SKTKLTWLLSIDLKG-WLPKSIINQVLSQTQVDF 198 (209)
T ss_pred EEEcCCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCC-CceEEEEEEeecCCC-CCCHHHHHHHhHHhHHHH
Confidence 333444555556665556665 3455444 4679999975332 489999998888754 344566666556666666
Q ss_pred HHHHHHHHH
Q 006549 437 YAMWIGMAH 445 (641)
Q Consensus 437 ~~~wv~~a~ 445 (641)
+..+-+++.
T Consensus 199 ~~~Lr~~~~ 207 (209)
T cd08905 199 ANHLRQRMA 207 (209)
T ss_pred HHHHHHHHh
Confidence 666655553
No 13
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=87.32 E-value=21 Score=36.24 Aligned_cols=145 Identities=8% Similarity=0.027 Sum_probs=75.6
Q ss_pred eeeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEEeee---eccCCceeeeeEEE
Q 006549 283 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIK---VYFGAKFGSCKETQ 359 (641)
Q Consensus 283 ~v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~~g~~di~~spW~~~~~~~~~R~isY~~pl~---~piGPK~t~c~e~Q 359 (641)
.-++.+++++++++|+.++.... ..++ +..+....+-..- +..+ .+.|.+.-. ..++|..- ...+
T Consensus 48 ~k~egvi~~~~e~v~~~l~~~e~---r~~W-----d~~~~~~~iie~I-d~~T-~I~~~~~~~~~~~~vspRDf--V~vr 115 (204)
T cd08904 48 YRVEGIIPESPAKLIQFMYQPEH---RIKW-----DKSLQVYKMLQRI-DSDT-FICHTITQSFAMGSISPRDF--VDLV 115 (204)
T ss_pred EEEEEEecCCHHHHHHHHhccch---hhhh-----cccccceeeEEEe-CCCc-EEEEEecccccCCcccCceE--EEEE
Confidence 34778999999999999765321 1111 1111111111100 0111 234432211 12556532 2223
Q ss_pred EEEEecCCeEEE-EEeEeeCCCC-CCCceEEEE---EEEEEecCCCCCCceEEEEEEEEEEeecccccchhccchHHHHH
Q 006549 360 KFRVYRNSHLVI-ETSQEVHDVP-YGDYFRVEG---LWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECR 434 (641)
Q Consensus 360 ki~~~~~~~~VV-etst~t~DVP-YGD~F~Ve~---R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~k 434 (641)
..+.++++.|++ ..++..+..| -.++.+.+. -|++.+.++++ ++|+|..++.+... ..+=+..|.+.--..+-
T Consensus 116 ~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p-~~t~l~~~~~~Dlk-G~lP~~vv~~~~~~~~~ 193 (204)
T cd08904 116 HIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENP-AYSKLVMFVQPELR-GNLSRSVIEKTMPTNLV 193 (204)
T ss_pred EEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCC-CceEEEEEEEeCCC-CCCCHHHHHHHhHHHHH
Confidence 333446666665 4444444543 456555554 59999986543 37999999998764 34556677665555555
Q ss_pred HHHHHHH
Q 006549 435 DVYAMWI 441 (641)
Q Consensus 435 e~~~~wv 441 (641)
+++..+-
T Consensus 194 ~f~~~~~ 200 (204)
T cd08904 194 NLILDAK 200 (204)
T ss_pred HHHHHHH
Confidence 5555543
No 14
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=86.32 E-value=36 Score=34.40 Aligned_cols=142 Identities=15% Similarity=0.150 Sum_probs=76.9
Q ss_pred eeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccC-------C-CceeEEEEEEEeeeecc--CCcee
Q 006549 284 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHY-------E-FGYSRDLSFQHPIKVYF--GAKFG 353 (641)
Q Consensus 284 v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~~g~~di~~spW~~~~-------~-~~~~R~isY~~pl~~pi--GPK~t 353 (641)
-.+.++++|++.+|..+|.|-. ....|...- . +... .+.|. ++.|. ||-+.
T Consensus 52 k~~~~v~~~~~~l~~~ll~D~~----------------~~~~W~~~~~~~~vi~~~~~~~-~i~Y~--v~~p~~~~pv~~ 112 (209)
T cd08906 52 ILKAFMQCPAELVYQEVILQPE----------------KMVLWNKTVSACQVLQRVDDNT-LVSYD--VAAGAAGGVVSP 112 (209)
T ss_pred EEEEEEcCCHHHHHHHHHhChh----------------hccccCccchhhhheeeccCCc-EEEEE--EccccccCCCCC
Confidence 3578899999999987776653 112332211 0 1112 23342 22222 23221
Q ss_pred -eeeEEEEEEEecCCeEEEEEeEeeCCCC-CCCceEEE---EEEEEEecCCCCCCceEEEEEEEEEEeecccccchhccc
Q 006549 354 -SCKETQKFRVYRNSHLVIETSQEVHDVP-YGDYFRVE---GLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQS 428 (641)
Q Consensus 354 -~c~e~Qki~~~~~~~~VVetst~t~DVP-YGD~F~Ve---~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEks 428 (641)
......++...++.++++..+.....+| .-++-+++ +.|.+.+... ++++|++...+.+...+ .+=+.+|.+.
T Consensus 113 RDfV~~r~~~~~~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~-~~~~t~vt~~~~~Dp~G-~lP~~lvN~~ 190 (209)
T cd08906 113 RDFVNVRRIERRRDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSAS-NPSVCTFIWILNTDLKG-RLPRYLIHQS 190 (209)
T ss_pred CceEEEEEEEecCCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCC-CCCceEEEEEEecCCCC-CCCHHHHHHH
Confidence 2222233333334444455555555565 55666666 3455554311 23489998888888754 4556677776
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 006549 429 TLEECRDVYAMWIGMAHD 446 (641)
Q Consensus 429 t~~g~ke~~~~wv~~a~e 446 (641)
..+..-+++..+-+++.+
T Consensus 191 ~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 191 LAATMFEFASHLRQRIRD 208 (209)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 666777777777666643
No 15
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=86.23 E-value=25 Score=31.72 Aligned_cols=58 Identities=7% Similarity=-0.009 Sum_probs=36.0
Q ss_pred CCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeecccccchhccchHHHHHHHHHHHHHHHHH
Q 006549 383 GDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHD 446 (641)
Q Consensus 383 GD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~wv~~a~e 446 (641)
+..+.....|.+++.+ ++|+|.....+.+.. .++.+...-.-...++....+++.+++
T Consensus 84 ~~~~~~~~~~~l~~~~----~gT~v~~~~~~~~~g--~l~~l~~~~~~~~~~~~~~~~~~~l~~ 141 (144)
T cd05018 84 AGFVKGTARVTLEPDG----GGTRLTYTADAQVGG--KLAQLGSRLIDGAARKLINQFFENLAS 141 (144)
T ss_pred CceEEEEEEEEEEecC----CcEEEEEEEEEEEcc--ChhhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 5567899999999862 379999999998754 333333333333444444444444443
No 16
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=84.41 E-value=40 Score=32.40 Aligned_cols=143 Identities=15% Similarity=0.171 Sum_probs=81.8
Q ss_pred eeeeeEEecCHHHHHhhhccCCchhHHHHHH-HHcCCcceeeccccccCCCceeEEEEEEEeeeeccCCceeeeeEEEEE
Q 006549 283 KVAETNFQMKVEDFYSLFFSDDTVNFIESFH-RKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKF 361 (641)
Q Consensus 283 ~v~e~~fpisv~~~F~lLFgD~s~~F~~~f~-~~~g~~di~~spW~~~~~~~~~R~isY~~pl~~piGPK~t~c~e~Qki 361 (641)
...+.+.++|+++||.++.. ..+++.+.+ +.-...++.-+.|.+ +|..|.++|.. |.+. ..-.|++
T Consensus 6 ~~~E~~~~~~a~k~~ka~~~--~~~llpki~P~~i~sve~~eGdgg~---gGSIk~~~f~~------~~~~--~~~Kekv 72 (151)
T PF00407_consen 6 LEVEVEVKVSADKLWKAFKS--SPHLLPKILPHVIKSVEVVEGDGGP---GGSIKKWTFGP------GGPF--KYVKEKV 72 (151)
T ss_dssp EEEEEEESS-HHHHHHHHTT--HHHHHHHHSTTTEEEEEEEESSSST---TT-EEEEEEET------TSSE--EEEEEEE
T ss_pred EEEEEEecCCHHHHHHHHhc--CccchhhhChhhceeEEEEccCCCC---CCeEEEEEecC------CCCc--ceeEEEE
Confidence 44678889999999999755 345666554 222344555678854 36799998875 2222 3347888
Q ss_pred EEecCCeEEEEEeEeeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeecccccchhccc-hHHHHHHHHHHH
Q 006549 362 RVYRNSHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQS-TLEECRDVYAMW 440 (641)
Q Consensus 362 ~~~~~~~~VVetst~t~DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEks-t~~g~ke~~~~w 440 (641)
...++....+..+..--| +.+++..-.....+.+.+ .++|.++.. ++|.+.. +.. .-+...+.+..+
T Consensus 73 e~~D~~~~~~~y~viEGd-~l~~~~~~~~~~~~~~~~---~g~~v~k~t--~~Ye~~~------~~~~~p~~~~~~~~~~ 140 (151)
T PF00407_consen 73 EAIDEENKTITYTVIEGD-VLGDYKSFKSTIQKIPKG---DGGCVVKWT--IEYEKKG------EDVPPPEKYLDFAVGM 140 (151)
T ss_dssp EEEETTTTEEEEEEEEET-TGTTTEEEEEEEEEEEET---TSCEEEEEE--EEEEESS------TSCHHHHHHHHHHHHH
T ss_pred EeecCCCcEEEEEEEecc-ccccEEEEEEEEEecCCC---CCceEEEEE--EEEEecC------CCCCCcHHHHHHHHHH
Confidence 877665444444433344 345555544444444443 235765544 4454422 222 345566667778
Q ss_pred HHHHHHHHhh
Q 006549 441 IGMAHDVLKQ 450 (641)
Q Consensus 441 v~~a~e~lk~ 450 (641)
.+.+..||-.
T Consensus 141 ~K~ieayLla 150 (151)
T PF00407_consen 141 FKAIEAYLLA 150 (151)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8888777753
No 17
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=83.50 E-value=34 Score=33.38 Aligned_cols=144 Identities=8% Similarity=0.012 Sum_probs=75.0
Q ss_pred eeeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEEeeeec--cCCceeeeeEEEE
Q 006549 283 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVY--FGAKFGSCKETQK 360 (641)
Q Consensus 283 ~v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~~g~~di~~spW~~~~~~~~~R~isY~~pl~~p--iGPK~t~c~e~Qk 360 (641)
.-.+.+++++++++|+++..- +...+|...+....+ +.. .+.+ ..+.|..- +.| +.+. ......+
T Consensus 43 ~k~~~~i~~s~e~v~~vi~d~---e~~~~w~~~~~~~~v-ie~---~~~~---~~i~~~~~-~~p~pvs~R--dfv~~~~ 109 (195)
T cd08876 43 FKAVAEVDASIEAFLALLRDT---ESYPQWMPNCKESRV-LKR---TDDN---ERSVYTVI-DLPWPVKDR--DMVLRST 109 (195)
T ss_pred EEEEEEEeCCHHHHHHHHhhh---HhHHHHHhhcceEEE-eec---CCCC---cEEEEEEE-ecccccCCc--eEEEEEE
Confidence 345678999999999997532 233444432222111 111 1111 23333321 222 2222 1111222
Q ss_pred EEEe-cCCeEEEEEeEeeCCCCCCC----ceEEEEEEEEEecCCCCCCceEEEEEEEEEEeecccccchhccchHHHHHH
Q 006549 361 FRVY-RNSHLVIETSQEVHDVPYGD----YFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRD 435 (641)
Q Consensus 361 i~~~-~~~~~VVetst~t~DVPYGD----~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke 435 (641)
.... ++..++|.......++|-.. .+.....|.|++.++ ++|+|.....+.+. ..+-+..|...+......
T Consensus 110 ~~~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~---~~t~vt~~~~~dp~-g~iP~~lv~~~~~~~~~~ 185 (195)
T cd08876 110 TEQDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGN---GKTRVTYQAYADPG-GSIPGWLANAFAKDAPYN 185 (195)
T ss_pred EEEcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCC---CeEEEEEEEEeCCC-CCCCHHHHHHHHHHHHHH
Confidence 2222 24556665544333356332 356677899998853 38999999999984 467777776655555555
Q ss_pred HHHHHHHH
Q 006549 436 VYAMWIGM 443 (641)
Q Consensus 436 ~~~~wv~~ 443 (641)
.+..+.+.
T Consensus 186 ~l~~l~~~ 193 (195)
T cd08876 186 TLENLRKQ 193 (195)
T ss_pred HHHHHHHh
Confidence 54444433
No 18
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=83.27 E-value=51 Score=33.29 Aligned_cols=88 Identities=14% Similarity=0.032 Sum_probs=50.5
Q ss_pred cCCeEEEEEeEeeCCCCCCCc-eEE---EEEEEEEecCCCCCCceEEEEEEEEEEeecccccchhccchHHHHHHHHHHH
Q 006549 365 RNSHLVIETSQEVHDVPYGDY-FRV---EGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMW 440 (641)
Q Consensus 365 ~~~~~VVetst~t~DVPYGD~-F~V---e~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~w 440 (641)
++..+++..+...+++|-.+- -++ ...|.|++.++ ++|++...+.+...++ +=+.+|.+-+....-..++.+
T Consensus 121 ~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~---~~t~vt~~~~~Dp~G~-IP~~lvN~~~~~~~~~~l~~l 196 (222)
T cd08871 121 GGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGP---KGCTLTYVTQNDPKGS-LPKWVVNKATTKLAPKVMKKL 196 (222)
T ss_pred CCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCC---CCEEEEEEEecCCCCC-cCHHHHHHHHHHHhHHHHHHH
Confidence 333455666777778885554 333 34688988753 3799999998888653 223333333333444555555
Q ss_pred HHHHHH---HHhhcccCCC
Q 006549 441 IGMAHD---VLKQKNLEKP 456 (641)
Q Consensus 441 v~~a~e---~lk~~~~e~~ 456 (641)
-+++.+ +-+++|.+.+
T Consensus 197 ~k~~~~y~~~~~~~~~~~~ 215 (222)
T cd08871 197 HKAALKYPEWKAKNNPEFK 215 (222)
T ss_pred HHHHHHHHHHHHhcCCCCC
Confidence 555544 3345555544
No 19
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=81.11 E-value=4.6 Score=35.65 Aligned_cols=59 Identities=14% Similarity=0.272 Sum_probs=39.7
Q ss_pred CCCCeeeeEEEEEEee---cc--eeceEEEEecceEEEEeccCCceeEEEEecccccccccccc
Q 006549 77 PSEEVLVQDFNCAFQE---SI--LLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKT 135 (641)
Q Consensus 77 P~~E~Li~~f~CaL~r---~i--~l~GrLYIS~~~iCF~S~ifg~~tk~~Ip~~dI~~I~K~kt 135 (641)
|.+..+...-.+.|.. ++ .-.|++|+|.+.||+.-..-.....+.||+.+|..++...+
T Consensus 12 ~~E~~~~~q~~V~LYdG~~K~~~~q~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~g 75 (89)
T PF11605_consen 12 PNETIVYQQDGVGLYDGDQKTPNFQNGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAG 75 (89)
T ss_dssp TT--EEEEEEEEEEEETTECSTT-SCEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-S
T ss_pred CCceEEEEecCeeeEcCCccCccccCCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEcc
Confidence 4444555677777763 33 34799999999999986543333468999999999966543
No 20
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=80.35 E-value=6.5 Score=36.47 Aligned_cols=76 Identities=22% Similarity=0.277 Sum_probs=54.7
Q ss_pred eecceeceEEEEecceEEEEeccCCceeEEEEecccccccccccc--ccccCCeEEEEecC-eEEEEeccCCHHHHHHHH
Q 006549 91 QESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKT--AGIFPNAIEIFAAG-KKYFFASFLSRDEAFKLI 167 (641)
Q Consensus 91 ~r~i~l~GrLYIS~~~iCF~S~ifg~~tk~~Ip~~dI~~I~K~kt--a~i~pnaI~I~T~~-~k~~F~SF~~RD~ay~~I 167 (641)
...+.-+|++.|-++-+=||..- ..+--+.|||++|..|...-. -..+|- ..|.|+. .+|.|++=-+. .+.+.|
T Consensus 18 ~~g~~~yGkimiGDkaFEFyn~~-n~~dyIQIPW~eI~~V~a~V~fkgk~I~R-F~I~Tk~~G~f~Fsskd~k-~~Lk~~ 94 (118)
T PF06115_consen 18 YLGLGKYGKIMIGDKAFEFYNDR-NVEDYIQIPWEEIDYVIASVSFKGKWIPR-FAIFTKKNGKFTFSSKDSK-KVLKAI 94 (118)
T ss_pred EecccccCeEEEcccceEeecCC-ChhhcEEeChhheeEEEEEEEECCCEEee-EEEEECCCCEEEEEECChH-HHHHHH
Confidence 34566899999999999999753 224458999999999887533 134555 8899986 99999886443 344444
Q ss_pred HH
Q 006549 168 TD 169 (641)
Q Consensus 168 ~~ 169 (641)
.+
T Consensus 95 r~ 96 (118)
T PF06115_consen 95 RK 96 (118)
T ss_pred HH
Confidence 43
No 21
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=79.85 E-value=3.6 Score=37.35 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=39.4
Q ss_pred cchHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhh
Q 006549 594 ESIPWLERRMHYL--KDEMLMVEARLERMWHEHAVLRAQLKDIEQLHK 639 (641)
Q Consensus 594 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (641)
.-+.=||.++.|| +++++..+..|.+||-|..-|.++|+.++|+-.
T Consensus 49 ~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 49 RRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3455578888888 999999999999999999999999999988743
No 22
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.73 E-value=6.9 Score=45.23 Aligned_cols=100 Identities=20% Similarity=0.242 Sum_probs=71.5
Q ss_pred hhhhhhCC-CCCCCeeeeEEEEEEeecceeceEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCC--eEE
Q 006549 68 EEYRQLFR-LPSEEVLVQDFNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPN--AIE 144 (641)
Q Consensus 68 ~~F~~lF~-LP~~E~Li~~f~CaL~r~i~l~GrLYIS~~~iCF~S~ifg~~tk~~Ip~~dI~~I~K~kta~i~pn--aI~ 144 (641)
..+...|. ||-+......|.|-+.. ...|.|+||+=.|.|.+.--+..--+-+||.=|..|+|..++.---| +|+
T Consensus 28 ~~~~~~~~~L~GE~i~~~~y~c~f~G--~~~g~l~lsNyRl~fks~~t~~~~~~~VPLg~Ie~vek~~~~~~g~ns~~L~ 105 (717)
T KOG4471|consen 28 ENLQVPFPLLPGESIIDEKYICPFLG--AVDGTLALSNYRLYFKSKETDPPFVLDVPLGVIERVEKRGGATSGENSFGLE 105 (717)
T ss_pred ccccCcccccCCcccccceecccccc--cccceEEeeeeEEEEEeccCCCceeEeechhhhhhhhhcCccccCCcceeEE
Confidence 34677788 55444445678888877 67899999999999998765555578899999999999874432222 788
Q ss_pred EEecCe---EEEEeccCC-HHHHHHHHHH
Q 006549 145 IFAAGK---KYFFASFLS-RDEAFKLITD 169 (641)
Q Consensus 145 I~T~~~---k~~F~SF~~-RD~ay~~I~~ 169 (641)
|+.++. +|-|..+.. |-+.|..|.+
T Consensus 106 i~CKDmr~lR~~fk~~~q~r~~~~e~L~~ 134 (717)
T KOG4471|consen 106 ITCKDMRNLRCAFKQEEQCRRDWFERLNR 134 (717)
T ss_pred EEeccccceeeecCcccccHHHHHHHHHH
Confidence 887764 466666653 4455655554
No 23
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=76.11 E-value=5.6 Score=33.33 Aligned_cols=41 Identities=20% Similarity=0.435 Sum_probs=33.5
Q ss_pred chHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006549 595 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 635 (641)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (641)
-+||+|..+..|-+.+.--..+|++|++++.+|+.+|+.++
T Consensus 12 ~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 12 KLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47888999999999999999999999999999999999886
No 24
>PRK09039 hypothetical protein; Validated
Probab=73.98 E-value=4 Score=44.52 Aligned_cols=71 Identities=23% Similarity=0.237 Sum_probs=57.8
Q ss_pred eehhhHHHHHHHH--hheeeeeecCCCceeecCCCcccCCCccccCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 006549 545 LILVIAFAVIFLM--QVSILVLLNRPQHVHMASPPDYMGAGVGVGLGQRSAESIPWLERRMHYLKDEMLMVEARLERMWH 622 (641)
Q Consensus 545 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (641)
||+|+.|++.+|| |++. + ....+=.+.|+=|+.+|.-|-|-..|-..+..+|+.
T Consensus 26 ll~~~~f~l~~f~~~q~fL-------------s-----------~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~ 81 (343)
T PRK09039 26 LLLVIMFLLTVFVVAQFFL-------------S-----------REISGKDSALDRLNSQIAELADLLSLERQGNQDLQD 81 (343)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------H-----------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 6788888887777 8776 1 112334577888999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHhhh
Q 006549 623 EHAVLRAQLKDIEQLHK 639 (641)
Q Consensus 623 ~~~~~~~~~~~~~~~~~ 639 (641)
+.+.|++++..++..|.
T Consensus 82 ~l~~l~~~l~~a~~~r~ 98 (343)
T PRK09039 82 SVANLRASLSAAEAERS 98 (343)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998888775
No 25
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=73.84 E-value=6.2 Score=36.11 Aligned_cols=43 Identities=23% Similarity=0.475 Sum_probs=39.1
Q ss_pred CCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006549 592 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDI 634 (641)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (641)
-.||+..|++|+..|+.++.-.+..+.+++.++..|+..|..+
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3569999999999999999999999999999999999988754
No 26
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=73.82 E-value=65 Score=28.62 Aligned_cols=106 Identities=8% Similarity=0.097 Sum_probs=52.1
Q ss_pred eeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccC-CCceeEEEEEEEeeeeccCCceeeeeEEEEEE
Q 006549 284 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHY-EFGYSRDLSFQHPIKVYFGAKFGSCKETQKFR 362 (641)
Q Consensus 284 v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~~g~~di~~spW~~~~-~~~~~R~isY~~pl~~piGPK~t~c~e~Qki~ 362 (641)
-.+.++++|++++|+++-.-.. + ..+.. +...+. +.... ..+..|.+.+. .|. . ..+++.
T Consensus 4 ~~~~~i~a~~~~V~~~l~d~~~--~-~~w~~--~~~~~~---~~~~~~~~g~~~~~~~~------~g~---~--~~~~i~ 64 (140)
T cd07821 4 TVSVTIDAPADKVWALLSDFGG--L-HKWHP--AVASCE---LEGGGPGVGAVRTVTLK------DGG---T--VRERLL 64 (140)
T ss_pred EEEEEECCCHHHHHHHHhCcCc--h-hhhcc--CcceEE---eecCCCCCCeEEEEEeC------CCC---E--EEEEeh
Confidence 3567899999999999754332 2 23332 122222 11111 12344433332 221 1 134444
Q ss_pred EecC--CeEEEEEeEeeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEe
Q 006549 363 VYRN--SHLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFS 416 (641)
Q Consensus 363 ~~~~--~~~VVetst~t~DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~ 416 (641)
..+. ..+.+... -.+.|+. .....|.++..++ ++|+|.......-.
T Consensus 65 ~~~~~~~~i~~~~~--~~~~~~~---~~~~~~~~~~~~~---~~t~v~~~~~~~~~ 112 (140)
T cd07821 65 ALDDAERRYSYRIV--EGPLPVK---NYVATIRVTPEGD---GGTRVTWTAEFDPP 112 (140)
T ss_pred hcCccCCEEEEEec--CCCCCcc---cceEEEEEEECCC---CccEEEEEEEEecC
Confidence 3322 33333322 1234544 3578899998653 37887776665443
No 27
>PF06713 bPH_4: Bacterial PH domain; InterPro: IPR009589 This entry is represented by Bacteriophage SP-beta, YolF. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown.
Probab=72.05 E-value=18 Score=30.52 Aligned_cols=64 Identities=17% Similarity=0.250 Sum_probs=45.8
Q ss_pred EecceEEEEeccCCceeEEEEecccccccccccccccc----CCeEEEEecCeEEEEeccCCHHHHHHHHHH
Q 006549 102 LFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIF----PNAIEIFAAGKKYFFASFLSRDEAFKLITD 169 (641)
Q Consensus 102 IS~~~iCF~S~ifg~~tk~~Ip~~dI~~I~K~kta~i~----pnaI~I~T~~~k~~F~SF~~RD~ay~~I~~ 169 (641)
|.+++|.-+.-++. + .||+.+|..|++.++.... ...|+|..++.+.+.-|-.++++-...|.+
T Consensus 5 i~~~~L~I~~G~~~---~-~I~i~~I~~I~~~~~~~~~~a~S~~rl~I~y~~~~~i~IsP~~~~~FI~~L~k 72 (74)
T PF06713_consen 5 IEDDYLIIKCGFFK---K-KIPIEDIRSIRPTKNPLSSPALSLDRLEIYYGKYKSILISPKDKEEFIAELQK 72 (74)
T ss_pred EeCCEEEEEECCcc---c-EEEhHHccEEEecCCccccccccccEEEEEECCCCEEEEECCCHHHHHHHHHh
Confidence 35666666655332 2 2999999999998643322 368999998766788899898887666653
No 28
>PRK00295 hypothetical protein; Provisional
Probab=71.56 E-value=11 Score=31.58 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=37.3
Q ss_pred chHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006549 595 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 635 (641)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (641)
-+|+.|.-|..|-+.+.--...|.+|++...+|+.+|++++
T Consensus 13 kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 13 RQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 37889999999999999999999999999999999999876
No 29
>PRK02793 phi X174 lysis protein; Provisional
Probab=71.26 E-value=10 Score=32.16 Aligned_cols=41 Identities=15% Similarity=0.227 Sum_probs=36.8
Q ss_pred chHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006549 595 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 635 (641)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (641)
-+++.|+-|..|-+.+.--...+.+|+++..+|+.+|+.++
T Consensus 16 ~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 16 RLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 37888999999999999999999999999999999998875
No 30
>smart00338 BRLZ basic region leucin zipper.
Probab=70.38 E-value=8.7 Score=31.42 Aligned_cols=38 Identities=29% Similarity=0.414 Sum_probs=31.9
Q ss_pred chHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006549 595 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLK 632 (641)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (641)
-+.=||.+++.|..|-.-..++++.|+.|+..||.++.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35568888999999988888999999999999988774
No 31
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=70.30 E-value=98 Score=31.37 Aligned_cols=121 Identities=7% Similarity=-0.012 Sum_probs=61.3
Q ss_pred eeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEEeeeecc--CCceeeeeEEEEE
Q 006549 284 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYF--GAKFGSCKETQKF 361 (641)
Q Consensus 284 v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~~g~~di~~spW~~~~~~~~~R~isY~~pl~~pi--GPK~t~c~e~Qki 361 (641)
..+.++++|+++++++|..-... .++.......++- . +.+ ...+-+.++.+..-|+ -+. .....++.
T Consensus 48 ~ge~~v~as~~~v~~ll~D~~~r---~~Wd~~~~~~~vl--~-~~~---~d~~i~y~~~~~Pwp~~~~~R--DfV~l~~~ 116 (205)
T cd08874 48 LGAGVIKAPLATVWKAVKDPRTR---FLYDTMIKTARIH--K-TFT---EDICLVYLVHETPLCLLKQPR--DFCCLQVE 116 (205)
T ss_pred EEEEEEcCCHHHHHHHHhCcchh---hhhHHhhhheeee--e-ecC---CCeEEEEEEecCCCCCCCCCC--eEEEEEEE
Confidence 36778999999999998332211 1222221111111 1 111 2234444444432222 232 22212332
Q ss_pred EEecCCeEEEEEeEeeC-CCC-CC-Cc---eEEEEEEEEEecCCCCCCceEEEEEEEEEEe
Q 006549 362 RVYRNSHLVIETSQEVH-DVP-YG-DY---FRVEGLWDVMRDDGGSKEGCILRVYVNVAFS 416 (641)
Q Consensus 362 ~~~~~~~~VVetst~t~-DVP-YG-D~---F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~ 416 (641)
...++.++|......+ .+| -+ ++ +.+.+.|.|++...+++++|+|...+.+.=.
T Consensus 117 -~~~~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPg 176 (205)
T cd08874 117 -AKEGELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALC 176 (205)
T ss_pred -EECCCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCC
Confidence 3455555555443333 666 33 44 4567789999973334458998888877653
No 32
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.46 E-value=7.7 Score=35.64 Aligned_cols=67 Identities=22% Similarity=0.205 Sum_probs=48.4
Q ss_pred cceeceEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCCeEEEEec-CeEEEEeccCCH
Q 006549 93 SILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAA-GKKYFFASFLSR 160 (641)
Q Consensus 93 ~i~l~GrLYIS~~~iCF~S~ifg~~tk~~Ip~~dI~~I~K~kta~i~pnaI~I~T~-~~k~~F~SF~~R 160 (641)
.+.-.|++-|-+.-+=||.+. ....-+.|||++|..|--..+..-.-.-..|.|+ +.+|.|+|=-+.
T Consensus 20 g~~~~GkiliGDkgfEFYn~~-nv~k~iqipWs~i~~v~vsvs~KK~~~~f~i~td~~gk~~FaSkdsg 87 (122)
T COG4687 20 GFAEYGKILIGDKGFEFYNDR-NVEKFIQIPWSEINEVDVSVSLKKWGRQFSIFTDTQGKVRFASKDSG 87 (122)
T ss_pred ehhhcCeEEEcccceeecCCC-ChhheeEecHHHhheeheeehhhhhcceEEEEEcCCceEEEEeCCch
Confidence 344679999999999998764 3356689999999977654433312235778887 699999997543
No 33
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=68.07 E-value=1e+02 Score=28.54 Aligned_cols=44 Identities=14% Similarity=0.047 Sum_probs=30.1
Q ss_pred CCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeecc--cccchhcc
Q 006549 380 VPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKT--VWKGKIVQ 427 (641)
Q Consensus 380 VPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT--~~K~~IEk 427 (641)
.+.+....+...|.+.+.+ ++|+|.+...+.+...- +++.+|.+
T Consensus 82 ~~~~g~~~~~~~~~l~~~~----~gT~v~~~~~~~~~g~l~~l~~~~v~~ 127 (146)
T cd07823 82 ARGQGTAEATVTLRLSPAG----GGTRVTVDTDLALTGKLAQFGRGGIGD 127 (146)
T ss_pred CCCcceEEEEEEEEEEecC----CcEEEEEEEEEEEeeEhHHhChhHHHH
Confidence 4555556888889898732 37999999999876532 44555555
No 34
>PRK04325 hypothetical protein; Provisional
Probab=67.07 E-value=14 Score=31.50 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=36.5
Q ss_pred chHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006549 595 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 635 (641)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (641)
-+++.|+-|..|-+.+.--...|.+|++...+|..+|+.++
T Consensus 17 klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 17 QLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 37888889999999999999999999999999999998875
No 35
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=66.90 E-value=9 Score=34.73 Aligned_cols=42 Identities=21% Similarity=0.387 Sum_probs=28.4
Q ss_pred CCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006549 592 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKD 633 (641)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (641)
-.||+.+|++|+..|++.+...+..+..++.....+.+.|..
T Consensus 75 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF02996_consen 75 LEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQ 116 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999988876665555555555555555444443
No 36
>PRK04406 hypothetical protein; Provisional
Probab=66.17 E-value=15 Score=31.50 Aligned_cols=41 Identities=12% Similarity=0.301 Sum_probs=35.2
Q ss_pred chHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006549 595 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 635 (641)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (641)
-+|++|.-|..|-+.|.--...|++|++++.+|+.+|+.++
T Consensus 19 ~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 19 QLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36788888888899988888889999999999998888765
No 37
>PRK02119 hypothetical protein; Provisional
Probab=66.14 E-value=15 Score=31.26 Aligned_cols=41 Identities=17% Similarity=0.320 Sum_probs=35.5
Q ss_pred chHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006549 595 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 635 (641)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (641)
-+++.|+-+..|-+.+.--...|.+|+.++.+|+.+|+.++
T Consensus 17 rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 17 KIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36788888888999988888889999999999999888875
No 38
>PRK00736 hypothetical protein; Provisional
Probab=65.34 E-value=17 Score=30.54 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=37.2
Q ss_pred chHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006549 595 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 635 (641)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (641)
-+|+.|+-|..|-+.+.--...|.+|++...+|+.+|+.++
T Consensus 13 klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 13 RVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 37899999999999999999999999999999999998865
No 39
>PRK00846 hypothetical protein; Provisional
Probab=65.24 E-value=16 Score=31.47 Aligned_cols=40 Identities=13% Similarity=0.093 Sum_probs=36.9
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006549 596 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 635 (641)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (641)
+||.|.-|..|-+.+.--...+.+|++...+|+.+|+.++
T Consensus 22 lAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 22 LSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6888888999999999999999999999999999999886
No 40
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=63.90 E-value=1.3e+02 Score=28.41 Aligned_cols=121 Identities=15% Similarity=0.110 Sum_probs=60.9
Q ss_pred eeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEEeeeeccCCceeeeeEEEEEEE
Q 006549 284 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRV 363 (641)
Q Consensus 284 v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~~g~~di~~spW~~~~~~~~~R~isY~~pl~~piGPK~t~c~e~Qki~~ 363 (641)
-...++++|+++++.+|+..+. ...+-.. ..+..+-.. ...+.......|..| .|+.|..--+ ......
T Consensus 42 k~~~~i~~~~~~v~~~l~d~~~---~~~w~~~--~~~~~vl~~--~~~~~~i~~~~~~~p--~p~~~Rdfv~--~~~~~~ 110 (193)
T cd00177 42 KAEGVIPASPEQVFELLMDIDL---RKKWDKN--FEEFEVIEE--IDEHTDIIYYKTKPP--WPVSPRDFVY--LRRRRK 110 (193)
T ss_pred EEEEEECCCHHHHHHHHhCCch---hhchhhc--ceEEEEEEE--eCCCeEEEEEEeeCC--CccCCccEEE--EEEEEE
Confidence 3668899999999999876332 1222111 111111100 011111122223222 2234442111 112222
Q ss_pred ec-CCeEEEEEeEeeCCCCCC-CceEEEEE---EEEEecCCCCCCceEEEEEEEEEEeec
Q 006549 364 YR-NSHLVIETSQEVHDVPYG-DYFRVEGL---WDVMRDDGGSKEGCILRVYVNVAFSKK 418 (641)
Q Consensus 364 ~~-~~~~VVetst~t~DVPYG-D~F~Ve~R---~~It~~~~~sk~~C~L~V~~~V~F~Ks 418 (641)
.. +..+++..+...+.+|-. ++-+.+.. |+|++.+ +++|++...+.+...++
T Consensus 111 ~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~---~~~~~vt~~~~~D~~g~ 167 (193)
T cd00177 111 LDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLD---PGKTKVTYVLQVDPKGS 167 (193)
T ss_pred cCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECC---CCCEEEEEEEeeCCCCC
Confidence 23 444555555544446654 66666654 9998874 34899999999988653
No 41
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=63.85 E-value=1.5e+02 Score=28.97 Aligned_cols=148 Identities=7% Similarity=0.004 Sum_probs=76.5
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEEeeee-ccCCceeeeeEEEEEEE
Q 006549 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKV-YFGAKFGSCKETQKFRV 363 (641)
Q Consensus 285 ~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~~g~~di~~spW~~~~~~~~~R~isY~~pl~~-piGPK~t~c~e~Qki~~ 363 (641)
+..+++.++.++|..++.|.. ...++...+...++ +... ..+ .+-+.|...... |+.|.. .....+...
T Consensus 49 ~~~~v~~~~~~~~~~~~~d~~--~r~~Wd~~~~~~~~-ie~~---~~~--~~i~~~~~~~~~~p~~~RD--fv~~r~~~~ 118 (206)
T smart00234 49 AVGVVPMVCADLVEELMDDLR--YRPEWDKNVAKAET-LEVI---DNG--TVIYHYVSKFVAGPVSPRD--FVFVRYWRE 118 (206)
T ss_pred EEEEEecChHHHHHHHHhccc--chhhCchhcccEEE-EEEE---CCC--CeEEEEEEecccCcCCCCe--EEEEEEEEE
Confidence 567888888887766666643 22333222221111 1111 112 222223222222 333332 111122222
Q ss_pred ecCCeEEE-EEeEeeCCCC-CCCce---EEEEEEEEEecCCCCCCceEEEEEEEEEEeecccccchhccchHHHHHHHHH
Q 006549 364 YRNSHLVI-ETSQEVHDVP-YGDYF---RVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYA 438 (641)
Q Consensus 364 ~~~~~~VV-etst~t~DVP-YGD~F---~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~ 438 (641)
..++.|+| ..+...+.+| -..+. .....|+|++.+. +.|++.....+...+. +=+..+..-.....-..++
T Consensus 119 ~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~---~~t~vt~~~~~D~~G~-iP~~lvn~~~~~~~~~~~~ 194 (206)
T smart00234 119 LVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGN---GPSKVTWVSHADLKGW-LPHWLVRSLIKSGLAEFAK 194 (206)
T ss_pred cCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCC---CCeEEEEEEEEecCCC-ccceeehhhhhhhHHHHHH
Confidence 34445554 4455556666 34444 3457899998753 3699999999998663 4456666555566666666
Q ss_pred HHHHHHHH
Q 006549 439 MWIGMAHD 446 (641)
Q Consensus 439 ~wv~~a~e 446 (641)
.|.+.+++
T Consensus 195 ~~~~~~~~ 202 (206)
T smart00234 195 TWVATLQK 202 (206)
T ss_pred HHHHHHHH
Confidence 66655544
No 42
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=62.41 E-value=1.7e+02 Score=29.21 Aligned_cols=150 Identities=8% Similarity=0.033 Sum_probs=78.5
Q ss_pred eeeEE-ecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEEeeeeccCCceeeeeEEEEEEE
Q 006549 285 AETNF-QMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRV 363 (641)
Q Consensus 285 ~e~~f-pisv~~~F~lLFgD~s~~F~~~f~~~~g~~di~~spW~~~~~~~~~R~isY~~pl~~piGPK~t~c~e~Qki~~ 363 (641)
...+| ++|++.|++++...+ +-.++...+....+- . ..+ ....+.+-|......|+-+.. .....+...
T Consensus 54 ~~~~~~~~s~~~~~~~l~D~~---~r~~Wd~~~~~~~~l-e---~~~-~~~~~i~y~~~~~P~P~s~RD--~V~~r~~~~ 123 (209)
T cd08870 54 VRGVFEDCTPELLRDFYWDDE---YRKKWDETVIEHETL-E---EDE-KSGTEIVRWVKKFPFPLSDRE--YVIARRLWE 123 (209)
T ss_pred EEEEEcCCCHHHHHHHHcChh---hHhhhhhheeeEEEE-E---ecC-CCCcEEEEEEEECCCcCCCce--EEEEEEEEE
Confidence 45678 679999999985533 334443332222111 1 111 112343434333333343432 221222222
Q ss_pred ecCCeE-EEEEeEeeCCCCCCCceEE---EEEEEEEecCCCCCCceEEEEEEEEEEeecccccchhccchHHHHHHHHHH
Q 006549 364 YRNSHL-VIETSQEVHDVPYGDYFRV---EGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAM 439 (641)
Q Consensus 364 ~~~~~~-VVetst~t~DVPYGD~F~V---e~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~ 439 (641)
..++.+ ++..+...+.+|-.++-+| ...|+|++... ++++|++.+.+...- +..+=+.++...+..++-..++.
T Consensus 124 ~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~-~~~~t~~~~~~~~dp-~G~IP~wlvN~~~~~~~~~~l~~ 201 (209)
T cd08870 124 SDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKG-DGQGSACEVTYFHNP-DGGIPRELAKLAVKRGMPGFLKK 201 (209)
T ss_pred cCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecC-CCCceEEEEEEEECC-CCCCCHHHHHHHHHhhhHHHHHH
Confidence 224444 4444544457887545544 46799998731 223677666666553 44455667777777777777777
Q ss_pred HHHHHHH
Q 006549 440 WIGMAHD 446 (641)
Q Consensus 440 wv~~a~e 446 (641)
+.+.++.
T Consensus 202 l~~a~~~ 208 (209)
T cd08870 202 LENALRK 208 (209)
T ss_pred HHHHHhc
Confidence 7766654
No 43
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=61.88 E-value=1.5e+02 Score=29.80 Aligned_cols=151 Identities=9% Similarity=0.006 Sum_probs=73.2
Q ss_pred eeeEE-ecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEEeeeeccCCceeeeeEEEEEEE
Q 006549 285 AETNF-QMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRV 363 (641)
Q Consensus 285 ~e~~f-pisv~~~F~lLFgD~s~~F~~~f~~~~g~~di~~spW~~~~~~~~~R~isY~~pl~~piGPK~t~c~e~Qki~~ 363 (641)
...+| ++|+++|++++...+ +-.++...+....+-.. .. ...++-+-|..-.-.|+-+. ......++..
T Consensus 49 ~~~~~~d~s~~~~~~~~~D~~---~r~~Wd~~~~~~~~le~----~~-~~~~~i~y~~~~~P~P~s~R--D~V~~r~~~~ 118 (207)
T cd08911 49 VYGSFDDVTARDFLNVQLDLE---YRKKWDATAVELEVVDE----DP-ETGSEIIYWEMQWPKPFANR--DYVYVRRYII 118 (207)
T ss_pred EEEEEcCCCHHHHHHHHhCHH---HHHHHHhhheeEEEEEc----cC-CCCCEEEEEEEECCCCCCCc--cEEEEEEEEE
Confidence 34567 899999999987443 43444443322222110 00 11233333322222222222 2222333333
Q ss_pred ecC-CeEEEEEe-EeeCCCCCCC-ceE---EEEEEEEEecCCCCCCceEEEEEEEEEEeecccccchhccchHHHHHHHH
Q 006549 364 YRN-SHLVIETS-QEVHDVPYGD-YFR---VEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVY 437 (641)
Q Consensus 364 ~~~-~~~VVets-t~t~DVPYGD-~F~---Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~ 437 (641)
..+ ..++|... ...+.+|-.+ +-+ ..+.|+|++.....+++|++.+.+...- |..+=+.++..-+..+.-+.+
T Consensus 119 ~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dP-gG~IP~~lvN~~~~~~~~~~l 197 (207)
T cd08911 119 DEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNP-GVNIPSYITSWVAMSGMPDFL 197 (207)
T ss_pred cCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCC-CCccCHHHHHHHHHhhccHHH
Confidence 333 34444443 3334777554 333 4678999976421234788776666543 223334555555555666666
Q ss_pred HHHHHHHHH
Q 006549 438 AMWIGMAHD 446 (641)
Q Consensus 438 ~~wv~~a~e 446 (641)
+.+-+.+++
T Consensus 198 ~~l~~a~~~ 206 (207)
T cd08911 198 ERLRNAALK 206 (207)
T ss_pred HHHHHHHhc
Confidence 666655543
No 44
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=61.63 E-value=1.2e+02 Score=30.19 Aligned_cols=117 Identities=8% Similarity=-0.010 Sum_probs=58.8
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCC-CceeEEEEEEEeeeeccCCceeeeeEEE-EEE
Q 006549 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYE-FGYSRDLSFQHPIKVYFGAKFGSCKETQ-KFR 362 (641)
Q Consensus 285 ~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~~g~~di~~spW~~~~~-~~~~R~isY~~pl~~piGPK~t~c~e~Q-ki~ 362 (641)
.+.+++.++++++.+++.. +...|-.+..+..-+. +....-+.|..+...|+-+. .....+ ...
T Consensus 48 ~~~~v~a~~~~v~~~l~d~------------r~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~R--DfV~~r~~~~ 113 (197)
T cd08869 48 ASTEVEAPPEEVLQRILRE------------RHLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPTR--DYVVLRTWRT 113 (197)
T ss_pred EEEEeCCCHHHHHHHHHHH------------HhccchhhheEEEEEEecCCcEEEEEEeeCCCCCCCc--eEEEEEEEEe
Confidence 5688899999999887532 1112222222221111 11122233333322222222 222121 121
Q ss_pred EecCCeEEEEEeEe-e-CCCCCCCceE---EEEEEEEEecCCCCCCceEEEEEEEEEEeecc
Q 006549 363 VYRNSHLVIETSQE-V-HDVPYGDYFR---VEGLWDVMRDDGGSKEGCILRVYVNVAFSKKT 419 (641)
Q Consensus 363 ~~~~~~~VVetst~-t-~DVPYGD~F~---Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT 419 (641)
..+++.|+|..... . ..+|= ++.+ ..+.|.|++.++ ++|+|...+.+...+..
T Consensus 114 ~~~~g~~~i~~~Sv~~~~~~p~-g~VR~~~~~~g~~i~p~~~---~~t~vty~~~~Dp~G~i 171 (197)
T cd08869 114 DLPKGACVLVETSVEHTEPVPL-GGVRAVVLASRYLIEPCGS---GKSRVTHICRVDLRGRS 171 (197)
T ss_pred cCCCCcEEEEEECCcCCCCCCC-CCEEEEEEeeeEEEEECCC---CCeEEEEEEEECCCCCC
Confidence 23344455444333 3 25665 6544 457799999753 48999999999986644
No 45
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=58.47 E-value=27 Score=30.69 Aligned_cols=47 Identities=26% Similarity=0.336 Sum_probs=40.8
Q ss_pred cchHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhc
Q 006549 594 ESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKR 640 (641)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (641)
.-+.+|+.+|..++.+...++..+++.|.++.--....|-+|.|+.+
T Consensus 52 ~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~ 98 (123)
T PF02050_consen 52 RYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKER 98 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999988888888999988754
No 46
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=54.97 E-value=2.4e+02 Score=28.39 Aligned_cols=151 Identities=9% Similarity=0.015 Sum_probs=78.3
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEEeee--eccCCceeeeeEEEEEE
Q 006549 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIK--VYFGAKFGSCKETQKFR 362 (641)
Q Consensus 285 ~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~~g~~di~~spW~~~~~~~~~R~isY~~pl~--~piGPK~t~c~e~Qki~ 362 (641)
.+.+++++++++|++++.... .+-.++...+.... .-..- +..+..+.+..|-. ..+.|.. ....+...
T Consensus 50 ~e~~i~~s~~~~~~~l~d~~~-~~r~~W~~~~~~~~-----vle~i-d~~~~i~~~~~p~~~~~~vs~RD--fV~~~~~~ 120 (208)
T cd08903 50 GEGIVYATLEQVWDCLKPAAG-GLRVKWDQNVKDFE-----VVEAI-SDDVSVCRTVTPSAAMKIISPRD--FVDVVLVK 120 (208)
T ss_pred EEEEecCCHHHHHHHHHhccc-hhhhhhhhccccEE-----EEEEe-cCCEEEEEEecchhcCCCcCCCc--eEEEEEEE
Confidence 778999999999999873321 11011111111111 10000 11122222222211 1133432 22234444
Q ss_pred EecCCeEEEEEeEeeC-CC-CCCCceEEEEE---EEEEecCCCCCCceEEEEEEEEEEeecccccchhccchHHHHHHHH
Q 006549 363 VYRNSHLVIETSQEVH-DV-PYGDYFRVEGL---WDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVY 437 (641)
Q Consensus 363 ~~~~~~~VVetst~t~-DV-PYGD~F~Ve~R---~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~ 437 (641)
..+++.|++......+ .. |-.++.+++.. |.+...+.+ .++|++..++.+.+. ..+=+..|.+...+.+.+.+
T Consensus 121 ~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~-~~~t~v~~~~~~Dpk-G~iP~~lvn~~~~~~~~~~~ 198 (208)
T cd08903 121 RYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGE-PDKTQLVSFFQTDLS-GYLPQTVVDSFFPASMAEFY 198 (208)
T ss_pred ecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCC-CCceEEEEEEEeccC-CCcCHHHHHHHhhHHHHHHH
Confidence 4555556555433333 44 34677777544 455555433 348999999999984 35556677666667777777
Q ss_pred HHHHHHHHH
Q 006549 438 AMWIGMAHD 446 (641)
Q Consensus 438 ~~wv~~a~e 446 (641)
..+-+++++
T Consensus 199 ~~Lr~~~~~ 207 (208)
T cd08903 199 NNLTKAVKA 207 (208)
T ss_pred HHHHHHHhh
Confidence 777766653
No 47
>PRK10724 hypothetical protein; Provisional
Probab=53.87 E-value=2.1e+02 Score=27.58 Aligned_cols=36 Identities=14% Similarity=0.310 Sum_probs=26.7
Q ss_pred eEEEEEEEEEecCCCCCCceEEEEEEEEEEeecccccchh
Q 006549 386 FRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKI 425 (641)
Q Consensus 386 F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~I 425 (641)
=..++.|.+.+.++ ++|+|.....++| |+.++..+.
T Consensus 97 ~~l~g~W~f~p~~~---~~t~V~~~l~fef-~s~l~~~~~ 132 (158)
T PRK10724 97 KKLIGGWKFTPLSQ---EACRIEFHLDFEF-TNKLIELAF 132 (158)
T ss_pred hhccceEEEEECCC---CCEEEEEEEEEEE-chHHHHHHH
Confidence 34899999999753 3799998888887 566665333
No 48
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=51.63 E-value=15 Score=32.74 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=33.4
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006549 597 PWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 635 (641)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (641)
+....++.-|++++..+|+++++++.+...++++++-|+
T Consensus 66 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L~ 104 (104)
T PF13600_consen 66 ESDSPELKELEEELEALEDELAALQDEIQALEAQIAFLQ 104 (104)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345678999999999999999999999999999988764
No 49
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=51.51 E-value=35 Score=31.00 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=22.2
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006549 599 LERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 635 (641)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (641)
+++++..++.|..-++++-++|+.|...||.-..-+|
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiE 68 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIE 68 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHH
Confidence 5556666666666666666666666666665333333
No 50
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=50.73 E-value=29 Score=35.99 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=36.7
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Q 006549 599 LERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLH 638 (641)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (641)
.++|+..+.||....+++++.+..|..+|+.+.+.|+++-
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v 79 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQV 79 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999998764
No 51
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=49.30 E-value=21 Score=29.25 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=24.9
Q ss_pred CCCcchHHHHHHhhhhhhHHHHHHHHHHHH
Q 006549 591 RSAESIPWLERRMHYLKDEMLMVEARLERM 620 (641)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (641)
-|.=||+=|+.||.+|+.|+.-+|+.+.+=
T Consensus 18 Ls~lSv~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 18 LSLLSVEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred chhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566689999999999999998888777653
No 52
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=49.30 E-value=41 Score=31.10 Aligned_cols=46 Identities=22% Similarity=0.367 Sum_probs=40.9
Q ss_pred chHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhc
Q 006549 595 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKR 640 (641)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (641)
-+..|..+|...+.++..++++++..|.++.--....+-||.|+.+
T Consensus 69 f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~lekL~ek 114 (141)
T TIGR02473 69 FIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKALEKLKEK 114 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999999999988888888899998754
No 53
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=48.15 E-value=30 Score=28.02 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=29.7
Q ss_pred eceEEEEecceEEEEeccCCceeEEEEecccccccc
Q 006549 96 LQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVR 131 (641)
Q Consensus 96 l~GrLYIS~~~iCF~S~ifg~~tk~~Ip~~dI~~I~ 131 (641)
--|+|+||+-.+..||..- ....+.|||-.|..++
T Consensus 19 ~~G~l~VTNlRiiW~s~~~-~~~NlSIgy~~i~~i~ 53 (55)
T smart00683 19 DLGVFFVTNLRLVWHSDTN-PRFNISVGYLQITNVR 53 (55)
T ss_pred CeeEEEEEeeEEEEEeCCC-CceEEEEcceeEEEEE
Confidence 3499999999999999864 3678999999998875
No 54
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=47.38 E-value=1.8e+02 Score=25.91 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=39.3
Q ss_pred eceEEEEecceEEEEeccCC-c---eeEEEEeccccccccccccccccCCeEEEEecCeEEEEec
Q 006549 96 LQGHMYLFVHFICFYSNIFG-F---ETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFAS 156 (641)
Q Consensus 96 l~GrLYIS~~~iCF~S~ifg-~---~tk~~Ip~~dI~~I~K~kta~i~pnaI~I~T~~~k~~F~S 156 (641)
-.=++|++++++..++...+ . ...-.||+.++. |+......-.||+++|.+..+.|.+..
T Consensus 17 ~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~-V~~~~~~~~~~~~F~I~~~~ks~~l~A 80 (99)
T cd01220 17 QQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGML-TEESEHEWGVPHCFTIFGGQCAITVAA 80 (99)
T ss_pred ceEEEEEccceEEEEEeecCCCceEEEEEEEEcCceE-EeeccCCcCCceeEEEEcCCeEEEEEC
Confidence 33467888887666554333 1 345689999886 555433223689999998888877743
No 55
>PF04707 PRELI: PRELI-like family; InterPro: IPR006797 These proteins contain a conserved region found in the yeast YLR168C gene MSF1 product. The function of this protein is unknown, though it is thought to be involved in intra-mitochondrial protein sorting. GFP-tagged MSF1 localizes to mitochondria and is required for wild-type respiratory growth []. This region is also found in a number of other eukaryotic proteins. The PRELI/MSF1 domain is an eukaryotic protein module which occurs in stand-alone form in several proteins, including the human PRELI protein and the yeast MSF1 protein, and as an amino-terminal domain in an orthologous group of proteins typified by human SEC14L1, which is conserved in all animals. In this group of proteins, the PRELI/MSF1 domain co-occurs with the CRAL-TRIO (see PDOC50191 from PROSITEDOC) and the GOLD domains (see PDOC50866 from PROSITEDOC). The PRELI/MSF1 domain is approximately 170 residues long and is predicted to assume a globular alpha + beta fold with six beta strands and four alpha helices. It has been suggested that the PRELI/MSF1 domain may have a function associated with cellular membrane [].
Probab=47.03 E-value=2.7e+02 Score=26.80 Aligned_cols=90 Identities=9% Similarity=0.100 Sum_probs=61.0
Q ss_pred eeEEEEEEEecCC-eEEEEEeEeeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEee-cccccchhccchHHH
Q 006549 355 CKETQKFRVYRNS-HLVIETSQEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSK-KTVWKGKIVQSTLEE 432 (641)
Q Consensus 355 c~e~Qki~~~~~~-~~VVetst~t~DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~K-sT~~K~~IEkst~~g 432 (641)
|.-.+...+.... .+. +.+..+=|.+.+.|+.+-...+.+.++ +.|.+.-.+.|...+ ...|.+.||+-..+.
T Consensus 61 ~~~~E~S~vD~~~k~l~----~~t~Nls~~~~~~v~E~~~Y~~~p~np-~~T~~~q~a~i~~~~~~~~~~~~iE~~~~~~ 135 (157)
T PF04707_consen 61 CYIIEESIVDPKNKTLT----TKTRNLSFSSFLSVEETCVYKPHPDNP-NWTLFKQEATISIKGSFSGFSSRIEKFSVSR 135 (157)
T ss_pred EEEEEEEEEECCCCEEE----EEEEEcccCceeEEEEEEEEEECCCCC-CcceEEEEEEEEEeCchhhHhHHHHHHHHHH
Confidence 4444555455333 333 345566789999999999999987665 489999999998644 246789999888877
Q ss_pred HHHHHHHHHHHHHHHHh
Q 006549 433 CRDVYAMWIGMAHDVLK 449 (641)
Q Consensus 433 ~ke~~~~wv~~a~e~lk 449 (641)
.+..+.+=.+.....|+
T Consensus 136 f~~na~kgr~~~e~vi~ 152 (157)
T PF04707_consen 136 FKSNAKKGREGMEWVIK 152 (157)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 76666554444444443
No 56
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=46.84 E-value=30 Score=41.59 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=30.5
Q ss_pred CCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 006549 592 SAESIPWLERRMHYLKDEMLMVEARLERMWHEH 624 (641)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (641)
...+++||++|+..|++|+.-+|.+|+..|.++
T Consensus 265 a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 265 DSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456899999999999999999999999999977
No 57
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=45.58 E-value=44 Score=31.36 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=37.7
Q ss_pred CCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006549 592 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 635 (641)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (641)
-.||+.-|++|+..|.+.+...+..++.++.++..+...|..+.
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999988888888888888888888877664
No 58
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function.
Probab=45.53 E-value=57 Score=33.54 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=31.0
Q ss_pred ceeceEEEEecceEEEEeccCCceeEEEEecccccccccc
Q 006549 94 ILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRA 133 (641)
Q Consensus 94 i~l~GrLYIS~~~iCF~S~ifg~~tk~~Ip~~dI~~I~K~ 133 (641)
-...||+.+|++.|.|-.+ ..|..|||++|.+|...
T Consensus 24 ~W~~~rIiLs~~rlvl~~~----~~k~~Ipls~I~Di~~~ 59 (221)
T PF04283_consen 24 KWVKGRIILSNDRLVLAFN----DGKITIPLSSIEDIGVR 59 (221)
T ss_pred CcEEEEEEEecCEEEEEcC----CCeEEEecceeEecccc
Confidence 3577999999999999874 46789999999999884
No 59
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=45.16 E-value=53 Score=29.72 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=39.5
Q ss_pred EEEecceEEEEecc-CCceeEEEEecccccccccccc---ccccCCeEEEEecCeEEEEecc
Q 006549 100 MYLFVHFICFYSNI-FGFETKKIIPFYEVTAVRRAKT---AGIFPNAIEIFAAGKKYFFASF 157 (641)
Q Consensus 100 LYIS~~~iCF~S~i-fg~~tk~~Ip~~dI~~I~K~kt---a~i~pnaI~I~T~~~k~~F~SF 157 (641)
..++.++|+|+..- ......-+|++.++..|+.... ..-.||+++|.|.+..|+|..=
T Consensus 24 F~L~~~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~rt~~l~A~ 85 (101)
T cd01264 24 FTLSGAQLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKTYILKAK 85 (101)
T ss_pred EEEeCCEEEEEeccCccCCCCceEEcccceEEeeccccccccccCcEEEEEcCCceEEEEeC
Confidence 46678888666432 1112335899999999876532 1135899999999999988643
No 60
>PHA03231 glycoprotein BALF4; Provisional
Probab=44.58 E-value=13 Score=44.94 Aligned_cols=53 Identities=23% Similarity=0.284 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhhhccccccCCceeehhhHHHHHHHHhheeeeeecC------CCceeecCCCc
Q 006549 521 AIASLLRESMTKCCSFVKRQSGVSLILVIAFAVIFLMQVSILVLLNR------PQHVHMASPPD 578 (641)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 578 (641)
+.+.++.-.+.-+.+||++-=++.+++++++++|++ ++||.| ..-++|..|..
T Consensus 684 ~v~ga~~SiVsG~~sFl~NPFGg~~iillvia~vv~-----v~l~~rr~~~~~~~P~k~lyP~~ 742 (829)
T PHA03231 684 GVAGAVGSIVSGVISFLKNPFGGLAIGLLVIAVLVA-----VFLAYRRVRRLRQNPMKMLYPYT 742 (829)
T ss_pred hHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh-----hhHHHHHHHHHHhCcHhhCCCCc
Confidence 445557778888999999987777766666654432 334444 33466666654
No 61
>PRK11519 tyrosine kinase; Provisional
Probab=43.89 E-value=34 Score=41.06 Aligned_cols=34 Identities=12% Similarity=0.381 Sum_probs=31.2
Q ss_pred CCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 006549 592 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHA 625 (641)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (641)
...+++||++|+.-|+.++..+|.+|+..|.++.
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~ 298 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKD 298 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4578999999999999999999999999999774
No 62
>PRK03100 sec-independent translocase; Provisional
Probab=43.31 E-value=45 Score=31.90 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=42.0
Q ss_pred CcchHHHHHHhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHhhHHHhhhc
Q 006549 593 AESIPWLERRMHYLKDEMLMVEARLE-RMWHEHAVLRAQLKDIEQLHKR 640 (641)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 640 (641)
++++.||-+=+..+|+.+.-++.+++ .|.-|+.-||.+|+.|..||..
T Consensus 27 P~~~r~lG~~vr~~R~~~~~~~~~~~~elg~e~~dlrk~l~el~~lr~l 75 (136)
T PRK03100 27 PGAIRWTARALRQARDYASGATSQLREELGPEFDDLRKPLGELQKLRGM 75 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 57889999999999999999998886 5778999999999999888753
No 63
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=43.11 E-value=70 Score=28.64 Aligned_cols=53 Identities=8% Similarity=0.122 Sum_probs=36.7
Q ss_pred EEecceEEEEeccCCceeEEEEeccccccccccccc-cccCCeEEEEecCeEEEE
Q 006549 101 YLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTA-GIFPNAIEIFAAGKKYFF 154 (641)
Q Consensus 101 YIS~~~iCF~S~ifg~~tk~~Ip~~dI~~I~K~kta-~i~pnaI~I~T~~~k~~F 154 (641)
-++.+.|++|..- +..-+=.||+.+|..|+..... .-.++.++|.|....|++
T Consensus 27 ~Lt~~~L~Y~k~~-~~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~r~~yi 80 (98)
T cd01244 27 QLTTTHLSWAKDV-QCKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCEDDTMQL 80 (98)
T ss_pred EECCCEEEEECCC-CCceeeeEEccceEEEEEcCCcccCCCceEEEEeCCCeEEE
Confidence 3466677777543 3456679999999999876542 223689999998765544
No 64
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=42.96 E-value=40 Score=29.29 Aligned_cols=42 Identities=31% Similarity=0.370 Sum_probs=25.3
Q ss_pred CCCCCcchHHHHHHhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHH
Q 006549 589 GQRSAESIPWLERRMHYLKD----------EMLMVEARLERMWHEHAVLRAQL 631 (641)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 631 (641)
.-|+.+.|+||..= ..|++ ++.....+||.++.|.+-|+.+|
T Consensus 37 R~y~~~dv~~l~~i-~~L~~d~g~~l~~i~~~l~l~~~~~~l~~~l~~l~~~~ 88 (91)
T cd04766 37 RRYSERDIERLRRI-QRLTQELGVNLAGVKRILELEEELAELRAELDELRARL 88 (91)
T ss_pred eeECHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35899999999754 44444 33334445555555555555544
No 65
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=42.17 E-value=3.3e+02 Score=26.41 Aligned_cols=144 Identities=11% Similarity=0.032 Sum_probs=77.7
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeecc-ccccCCCceeEEEEEE-Eeeee--ccCCceeeeeEEEE
Q 006549 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTS-WHRHYEFGYSRDLSFQ-HPIKV--YFGAKFGSCKETQK 360 (641)
Q Consensus 285 ~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~~g~~di~~sp-W~~~~~~~~~R~isY~-~pl~~--piGPK~t~c~e~Qk 360 (641)
+..++++++.++|..++.+.. .+ +..+.... -...+++ ..+.|. ..... |+-|. .......
T Consensus 50 ~~~~v~~~~~~~~~~~~~~~~-----~W-----d~~~~~~~~le~~~~~---~~i~~~~~~~~~~~p~~~R--Dfv~~~~ 114 (206)
T PF01852_consen 50 AEGVVPASPEQVVEDLLDDRE-----QW-----DKMCVEAEVLEQIDED---TDIVYFVMKSPWPGPVSPR--DFVFLRS 114 (206)
T ss_dssp EEEEESSCHHHHHHHHHCGGG-----HH-----STTEEEEEEEEEEETT---EEEEEEEEE-CTTTTSSEE--EEEEEEE
T ss_pred EEEEEcCChHHHHHHHHhhHh-----hc-----ccchhhheeeeecCCC---CeEEEEEecccCCCCCCCc--EEEEEEE
Confidence 557889999989998887653 11 11111111 1111111 222222 22222 33332 2222222
Q ss_pred EEEecCCe-EEEEEeEeeCCCCC--CCceEEE---EEEEEEecCCCCCCceEEEEEEEEEEeecccccchhccchHHHHH
Q 006549 361 FRVYRNSH-LVIETSQEVHDVPY--GDYFRVE---GLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECR 434 (641)
Q Consensus 361 i~~~~~~~-~VVetst~t~DVPY--GD~F~Ve---~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~k 434 (641)
.....++. +++..+...+..|- ..+-+++ ..|+|++.+. +.|++.....+...+ .+-+..+..-+...+-
T Consensus 115 ~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~---~~~~vt~~~~~D~~G-~iP~~~~n~~~~~~~~ 190 (206)
T PF01852_consen 115 WRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGD---GRTRVTYVSQVDPKG-WIPSWLVNMVVKSQPP 190 (206)
T ss_dssp EEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETT---CEEEEEEEEEEESSS-SSHHHHHHHHHHHHHH
T ss_pred EEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccC---CCceEEEEEEECCCC-CChHHHHHHHHHHhHH
Confidence 22234444 55666777777774 5666655 5599998853 369999999988755 3334444444555666
Q ss_pred HHHHHHHHHHHHH
Q 006549 435 DVYAMWIGMAHDV 447 (641)
Q Consensus 435 e~~~~wv~~a~e~ 447 (641)
+.++.+.+.++++
T Consensus 191 ~~~~~~~~~~~~~ 203 (206)
T PF01852_consen 191 NFLKNLRKALKKQ 203 (206)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 7777766666543
No 66
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=40.60 E-value=3.9e+02 Score=26.80 Aligned_cols=145 Identities=7% Similarity=0.022 Sum_probs=73.7
Q ss_pred eeeEEe-cCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEEEeeeeccCCceeeeeEEEEEEE
Q 006549 285 AETNFQ-MKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVYFGAKFGSCKETQKFRV 363 (641)
Q Consensus 285 ~e~~fp-isv~~~F~lLFgD~s~~F~~~f~~~~g~~di~~spW~~~~~~~~~R~isY~~pl~~piGPK~t~c~e~Qki~~ 363 (641)
...+|+ ++++.|++++...+ +..++...+... +.. ...+ .+.+-|......|+.+..-.+ .++...
T Consensus 53 ~~~~~~~~s~~~~~~~l~D~~---~r~~Wd~~~~~~-~~~-----~~~~--~~i~y~~~k~PwPvs~RD~V~--~r~~~~ 119 (207)
T cd08910 53 VFGVLEDCSPSLLADVYMDLE---YRKQWDQYVKEL-YEK-----ECDG--ETVIYWEVKYPFPLSNRDYVY--IRQRRD 119 (207)
T ss_pred EEEEEcCCCHHHHHHHHhCHH---HHHHHHHHHHhh-eee-----cCCC--CEEEEEEEEcCCCCCCceEEE--EEEecc
Confidence 356887 89999999975433 333333322210 111 1111 333333333333344443221 122222
Q ss_pred e--cCC-eEE-EEEeEeeCCCCCCC-ceE---EEEEEEEEecCCCCCCceEEEEEEEEEEeecccccchhccchHHHHHH
Q 006549 364 Y--RNS-HLV-IETSQEVHDVPYGD-YFR---VEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRD 435 (641)
Q Consensus 364 ~--~~~-~~V-Vetst~t~DVPYGD-~F~---Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke 435 (641)
. ++. -++ +......+++|-.+ +-+ ....|+|++.+ +++|++..++...- |..+=+.++..-+.++...
T Consensus 120 ~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~---~~~t~i~~~~~~DP-gG~IP~wlvN~~~~~~~~~ 195 (207)
T cd08910 120 LDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDG---KKGSKVFMYYFDNP-GGMIPSWLINWAAKNGVPN 195 (207)
T ss_pred ccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCC---CCceEEEEEEEeCC-CCcchHHHHHHHHHHhhHH
Confidence 2 222 233 33445556777554 333 55778898754 34799988888876 3233344555555556666
Q ss_pred HHHHHHHHHHH
Q 006549 436 VYAMWIGMAHD 446 (641)
Q Consensus 436 ~~~~wv~~a~e 446 (641)
.++.+-+.++.
T Consensus 196 ~l~~l~ka~~~ 206 (207)
T cd08910 196 FLKDMQKACQN 206 (207)
T ss_pred HHHHHHHHHhc
Confidence 66666655543
No 67
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=39.85 E-value=3.3e+02 Score=28.07 Aligned_cols=78 Identities=14% Similarity=0.107 Sum_probs=50.2
Q ss_pred EEEEEeEeeCCCCCC-CceEEEEE---------------EEEEecCCCCCCceEEEEEEEEEEeecccccchhccchHHH
Q 006549 369 LVIETSQEVHDVPYG-DYFRVEGL---------------WDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEE 432 (641)
Q Consensus 369 ~VVetst~t~DVPYG-D~F~Ve~R---------------~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g 432 (641)
.++..+...+++|=. ++.++... |.+++ .+++|++...+.+..-+ .+=+..|..-+..+
T Consensus 138 vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~----~~~~~~ity~~~~dPgG-~iP~wvvn~~~k~~ 212 (235)
T cd08872 138 IVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITR----DNILCKITYVANVNPGG-WAPASVLRAVYKRE 212 (235)
T ss_pred EEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccC----CCCeEEEEEEEEeCCCC-CccHHHHHHHHHhh
Confidence 345566666777754 77777742 33443 13489998888888743 44466676666677
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 006549 433 CRDVYAMWIGMAHDVLKQK 451 (641)
Q Consensus 433 ~ke~~~~wv~~a~e~lk~~ 451 (641)
.-...+.+-..+.+..|.+
T Consensus 213 ~P~~l~~~~~~~~~~~~~~ 231 (235)
T cd08872 213 YPKFLKRFTSYVQEKTKGK 231 (235)
T ss_pred chHHHHHHHHHHHHhcCCC
Confidence 7777777777776665544
No 68
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=39.82 E-value=99 Score=33.87 Aligned_cols=100 Identities=12% Similarity=0.133 Sum_probs=67.7
Q ss_pred CCCCCCeeeeEEEEEEe--ecceeceEEEEecceEEEEeccCCceeEEEEecccccccccccccc-c--cCCeEEEEec-
Q 006549 75 RLPSEEVLVQDFNCAFQ--ESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAG-I--FPNAIEIFAA- 148 (641)
Q Consensus 75 ~LP~~E~Li~~f~CaL~--r~i~l~GrLYIS~~~iCF~S~ifg~~tk~~Ip~~dI~~I~K~kta~-i--~pnaI~I~T~- 148 (641)
.|-.+|.+++.+.-.=- ..---.|+|+||+=.|..||.--- ...+.|=|.-|..|+-..... + ...|+-|.++
T Consensus 18 ~lr~GE~~i~~~~~VEDtKGN~G~~G~l~vTNLR~iW~s~~~~-r~NlSIG~~~i~~i~~~~~~sklrg~teaL~i~~k~ 96 (339)
T PF07289_consen 18 KLRPGEFIIDRLDPVEDTKGNNGDRGRLVVTNLRLIWHSLKRP-RINLSIGYNCITNISTKTVNSKLRGNTEALYILAKF 96 (339)
T ss_pred ccccceEEEEeeeceeeccCCCCCeeEEEEEeeeeEEeccCCC-ceeEEeeceeEEEEEEEEeeccccCceeEEEEeeec
Confidence 34578888876655432 122246999999999999997432 466777777777776543221 1 2348888875
Q ss_pred ---CeEEEEeccCC---HHHHHHHHHHHHHhcC
Q 006549 149 ---GKKYFFASFLS---RDEAFKLITDGWLQHG 175 (641)
Q Consensus 149 ---~~k~~F~SF~~---RD~ay~~I~~~w~~~~ 175 (641)
+-+|+|+.... +...|..|..+|+...
T Consensus 97 ~~~rfEFiFt~~~~~~~~~~lf~~v~~v~raY~ 129 (339)
T PF07289_consen 97 NNTRFEFIFTNLSPNSPRQRLFTSVQAVYRAYE 129 (339)
T ss_pred CCceEEEEeccCCCCCccchHHHHHHHHHHHHH
Confidence 25789987753 2367999999998753
No 69
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=39.75 E-value=57 Score=30.07 Aligned_cols=42 Identities=19% Similarity=0.417 Sum_probs=33.4
Q ss_pred CCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006549 592 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKD 633 (641)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (641)
..||+.-+++|+..|++.+...+..+.+++.++..+-..|..
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 85 LEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356999999999999988888888888777777777665543
No 70
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=39.72 E-value=69 Score=26.04 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=15.6
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006549 599 LERRMHYLKDEMLMVEARLERMWHEHAVLRAQ 630 (641)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (641)
||.+++.|..|-......++.|+.+..-|+.+
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555444444444444444444444443
No 71
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=39.57 E-value=61 Score=29.03 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=40.4
Q ss_pred CCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006549 592 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 635 (641)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (641)
-.|+++=|++|+..|..++.-.+.+++.+..++.-||.+|..+-
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35789999999999999999999999999999999999998763
No 72
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=38.43 E-value=4.4e+02 Score=26.75 Aligned_cols=118 Identities=5% Similarity=-0.079 Sum_probs=60.7
Q ss_pred eeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCC-CceeEEEEEEEeeeeccCCceeeeeEEEEEEE
Q 006549 285 AETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYE-FGYSRDLSFQHPIKVYFGAKFGSCKETQKFRV 363 (641)
Q Consensus 285 ~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~~g~~di~~spW~~~~~-~~~~R~isY~~pl~~piGPK~t~c~e~Qki~~ 363 (641)
.+.+++.++.++..++..+ . .-+...+. .|..-+. +....-+.|....-.|+-+.. -|........
T Consensus 56 ~~~~i~a~~~~vl~~lld~-~-~~Wd~~~~----------e~~vIe~ld~~~~I~Yy~~~~PwP~~~RD-~V~~Rs~~~~ 122 (204)
T cd08908 56 TTIEVPAAPEEILKRLLKE-Q-HLWDVDLL----------DSKVIEILDSQTEIYQYVQNSMAPHPARD-YVVLRTWRTN 122 (204)
T ss_pred EEEEeCCCHHHHHHHHHhh-H-HHHHHHhh----------heEeeEecCCCceEEEEEccCCCCCCCcE-EEEEEEEEEe
Confidence 5678899999999998655 2 22222221 1211111 112333334322212211111 1221111111
Q ss_pred ecCCeEEEEE-eEeeCCCCCCCceE---EEEEEEEEecCCCCCCceEEEEEEEEEEeecc
Q 006549 364 YRNSHLVIET-SQEVHDVPYGDYFR---VEGLWDVMRDDGGSKEGCILRVYVNVAFSKKT 419 (641)
Q Consensus 364 ~~~~~~VVet-st~t~DVPYGD~F~---Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT 419 (641)
..++.++|.. +.....+|-. +.+ +.++|.|++.+ +++|+|..-+.+...+..
T Consensus 123 ~~~g~~~I~~~Sv~h~~~P~~-~VR~~~~~~~w~i~P~g---~g~t~vtyi~~~DPgG~i 178 (204)
T cd08908 123 LPKGACALLATSVDHDRAPVA-GVRVNVLLSRYLIEPCG---SGKSKLTYMCRIDLRGHM 178 (204)
T ss_pred CCCCeEEEEEeecCcccCCcC-ceEEEEEeeEEEEEECC---CCcEEEEEEEEeCCCCCC
Confidence 2334454444 4666778844 555 46889999975 348999999998876544
No 73
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=38.21 E-value=81 Score=26.82 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=23.9
Q ss_pred chHHHHHHhhhhhhH-------HHHHHHHHHHHHHHHHHHHHHHhh
Q 006549 595 SIPWLERRMHYLKDE-------MLMVEARLERMWHEHAVLRAQLKD 633 (641)
Q Consensus 595 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 633 (641)
.|+=|+.++..||++ -...+...+++++|+...+.+|..
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666665 555555666777777666666654
No 74
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=37.80 E-value=1.4e+02 Score=24.09 Aligned_cols=64 Identities=23% Similarity=0.347 Sum_probs=41.8
Q ss_pred EEEEecceEEEEeccCC---ceeEEEEecccccccccccccc--ccCCeEEEEecCe-EEEEeccCCHHHHH
Q 006549 99 HMYLFVHFICFYSNIFG---FETKKIIPFYEVTAVRRAKTAG--IFPNAIEIFAAGK-KYFFASFLSRDEAF 164 (641)
Q Consensus 99 rLYIS~~~iCF~S~ifg---~~tk~~Ip~~dI~~I~K~kta~--i~pnaI~I~T~~~-k~~F~SF~~RD~ay 164 (641)
.+.+.++.|++|..--+ ......|++.++ .|....... -.++++.|.+.+. .|.|..- +.++.-
T Consensus 22 ~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~f~l~~~~~~~~~f~~~-s~~~~~ 91 (102)
T smart00233 22 YFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDSAKKPHCFEIKTADRRSYLLQAE-SEEERE 91 (102)
T ss_pred EEEEECCEEEEEeCCCccccCCCceEEECCcC-EEEeCCCCccCCCceEEEEEecCCceEEEEcC-CHHHHH
Confidence 45567788888876533 345678999998 555543321 3568999988876 8888654 444433
No 75
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=37.74 E-value=77 Score=28.26 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=31.4
Q ss_pred cCCCCCCcchHHHHHHhhhhhh------HHH----------HHHHHHHHHHHHHHHHHHHHhhHHHh
Q 006549 587 GLGQRSAESIPWLERRMHYLKD------EML----------MVEARLERMWHEHAVLRAQLKDIEQL 637 (641)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (641)
|---|+.+.|+||. .|..|++ |+. +.+.|++.+.++.+-|......|+++
T Consensus 35 g~R~Y~~~~l~~l~-~I~~l~~~G~~l~ei~~~l~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 100 (102)
T cd04789 35 GYRLYPDSDLQRLL-LIQQLQAGGLSLKECLACLQGKLTRSLLLERLSSLAEQIARKQQARDLLAAL 100 (102)
T ss_pred CCeeCCHHHHHHHH-HHHHHHHCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33468999999998 6777776 442 34455555555555555555555544
No 76
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=37.41 E-value=67 Score=31.61 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=24.3
Q ss_pred HHHHhhhhhhHHHHHH--------HHHHHHHHHHHHHHHHHhh-HHHhh
Q 006549 599 LERRMHYLKDEMLMVE--------ARLERMWHEHAVLRAQLKD-IEQLH 638 (641)
Q Consensus 599 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~ 638 (641)
+...+..||-||...+ +..++|++|+..|+..|++ +++|+
T Consensus 56 ~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~ 104 (177)
T PF07798_consen 56 FKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLR 104 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777887776654 5566666666666666654 44433
No 77
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=37.38 E-value=62 Score=27.88 Aligned_cols=64 Identities=13% Similarity=0.315 Sum_probs=41.0
Q ss_pred EEEEeecceeceEEEEecce--EEEEeccCCceeEEEEeccccccccccccccccCC-eEEEEecC------eEEEEe
Q 006549 87 NCAFQESILLQGHMYLFVHF--ICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPN-AIEIFAAG------KKYFFA 155 (641)
Q Consensus 87 ~CaL~r~i~l~GrLYIS~~~--iCF~S~ifg~~tk~~Ip~~dI~~I~K~kta~i~pn-aI~I~T~~------~k~~F~ 155 (641)
.|.+.+. .|.|||++.+ +-.-.+--+-...+.|||.+|+..+-.+... |. -++|+..+ ..|.|+
T Consensus 6 ~~~yKK~---~G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~s--~Kv~Lki~~~~~~~~~~~~f~F~ 78 (79)
T PF08567_consen 6 AASYKKK---DGTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEGS--PKVMLKIVLKDDSSEESKTFVFT 78 (79)
T ss_dssp EEEETTE---EEEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TTS--STEEEEEEETTSC---CCCEEE-
T ss_pred eEEEEcC---CcEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCCC--cceEEEEEEecCCcccceEEEEe
Confidence 4666543 4999999999 8887753333347999999999987654321 11 46676432 457775
No 78
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=36.95 E-value=52 Score=34.56 Aligned_cols=39 Identities=5% Similarity=0.081 Sum_probs=31.6
Q ss_pred chHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006549 595 SIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKD 633 (641)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (641)
++.=|+.+|..|+.|+...-.++|+++||+..|+.+-++
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 345678888889999999999999999999888876554
No 79
>PF04484 DUF566: Family of unknown function (DUF566) ; InterPro: IPR007573 This is a family of related proteins that is plant specific.
Probab=36.72 E-value=65 Score=34.84 Aligned_cols=42 Identities=24% Similarity=0.318 Sum_probs=36.2
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---HHHHHHhhHHHh
Q 006549 596 IPWLERRMHYLKDEMLMVEARLERMWHEHA---VLRAQLKDIEQL 637 (641)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 637 (641)
|-++-.||.-|++-+.|--..||++|||+. .|+.|+..||.-
T Consensus 182 L~~~w~~is~Lr~sV~~KRi~lq~~kq~~KL~~IL~~Q~~~Le~W 226 (311)
T PF04484_consen 182 LYNAWLRISELRDSVAMKRIELQRLKQELKLNSILKSQMPYLEEW 226 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 335567999999999999999999999975 589999999864
No 80
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=36.00 E-value=1.2e+02 Score=26.63 Aligned_cols=67 Identities=15% Similarity=0.223 Sum_probs=39.2
Q ss_pred EEecceEEEEeccCCceeEEEEecccccccccccccc--ccCCeEEEEecCeEEEEeccCCHHHHHHHHH
Q 006549 101 YLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAG--IFPNAIEIFAAGKKYFFASFLSRDEAFKLIT 168 (641)
Q Consensus 101 YIS~~~iCF~S~ifg~~tk~~Ip~~dI~~I~K~kta~--i~pnaI~I~T~~~k~~F~SF~~RD~ay~~I~ 168 (641)
.+..++|++|.+--.....-.|++.++.-..-..... -.||.+.|.|.+..|+|.. .+.++...=|.
T Consensus 24 vL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~~rt~~~~A-~s~~e~~~Wi~ 92 (100)
T cd01233 24 VVRRPYLHIYRSDKDPVERGVINLSTARVEHSEDQAAMVKGPNTFAVCTKHRGYLFQA-LSDKEMIDWLY 92 (100)
T ss_pred EEECCEEEEEccCCCccEeeEEEecccEEEEccchhhhcCCCcEEEEECCCCEEEEEc-CCHHHHHHHHH
Confidence 4466677766653334556788888763221111111 1478999999998888853 44555444333
No 81
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=35.70 E-value=81 Score=24.86 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 006549 607 KDEMLMVEARLERMWHEHAVLRAQLKDIEQ 636 (641)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (641)
|.++...|.+++.|..|...|+.++..|++
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566777788888899999999888888764
No 82
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=35.64 E-value=68 Score=29.46 Aligned_cols=40 Identities=18% Similarity=0.323 Sum_probs=28.6
Q ss_pred CCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006549 592 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQL 631 (641)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (641)
-.||++-|++|+..|.+.+...+..++.++.++..+..+|
T Consensus 84 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 84 AEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999988887777666666666666666655554
No 83
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=35.38 E-value=76 Score=31.16 Aligned_cols=33 Identities=18% Similarity=0.437 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhc
Q 006549 608 DEMLMVEARLERMWHEHAVLRAQLKDIEQLHKR 640 (641)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (641)
+++..-+..++++++++.+|..++++++.++.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 190 (191)
T PF04156_consen 158 EEVQELRSQLERLQENLQQLEEKIQELQELLEQ 190 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455555555555666666666665543
No 84
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=34.67 E-value=2e+02 Score=26.14 Aligned_cols=65 Identities=17% Similarity=0.255 Sum_probs=40.1
Q ss_pred ecceeceEEEEecceEEEEeccCC---ceeEEEEeccccccccccccccccCCeEEEEecCeEEEEecc
Q 006549 92 ESILLQGHMYLFVHFICFYSNIFG---FETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGKKYFFASF 157 (641)
Q Consensus 92 r~i~l~GrLYIS~~~iCF~S~ifg---~~tk~~Ip~~dI~~I~K~kta~i~pnaI~I~T~~~k~~F~SF 157 (641)
++-+.+=..|++++.+..-+.+.+ +...-.||+.++.-..-.. ..-++|++.|.+..+.|.+..=
T Consensus 15 rk~~~~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~~v~~~~d-~~~~~n~f~I~~~~kSf~v~A~ 82 (104)
T cd01218 15 RKKPKQRQFFLFNDILVYGNIVISKKKYNKQHILPLEGVQVESIED-DGIERNGWIIKTPTKSFAVYAA 82 (104)
T ss_pred cCCCceEEEEEecCEEEEEEeecCCceeeEeeEEEccceEEEecCC-cccccceEEEecCCeEEEEEcC
Confidence 333334346778887666554333 2345688999875333222 2346899999999888776543
No 85
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=34.56 E-value=66 Score=27.69 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 006549 607 KDEMLMVEARLERMWHEHAVLRAQLKDIEQ 636 (641)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (641)
|||.....+.|.+.|.....|-++|..||.
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999984
No 86
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=34.25 E-value=78 Score=33.58 Aligned_cols=39 Identities=13% Similarity=0.275 Sum_probs=26.6
Q ss_pred chHHHHHHhhhhhhH------HHHHHHHHHHHHHHHHHHHHHHhh
Q 006549 595 SIPWLERRMHYLKDE------MLMVEARLERMWHEHAVLRAQLKD 633 (641)
Q Consensus 595 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 633 (641)
-+.||..|+..+.+- ..|+|...+.+++.....+..|+.
T Consensus 167 kV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~ 211 (269)
T PF05278_consen 167 KVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEE 211 (269)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999887765 456666666666666665555543
No 87
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=34.25 E-value=58 Score=35.45 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=30.0
Q ss_pred CCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 006549 592 SAESIPWLERRMHYLKDEMLMVEARLERMWHEH 624 (641)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (641)
..++++||++++..+++++..||.+|+..|.++
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 200 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKN 200 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 368999999999999999999999999988865
No 88
>COG3461 Uncharacterized conserved protein [Function unknown]
Probab=34.14 E-value=43 Score=29.75 Aligned_cols=43 Identities=30% Similarity=0.322 Sum_probs=28.4
Q ss_pred CcchHHHHHHhhhhhhHHH---HHHHHHHHHHH---HHHHHHHHHhhHH
Q 006549 593 AESIPWLERRMHYLKDEML---MVEARLERMWH---EHAVLRAQLKDIE 635 (641)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~ 635 (641)
.|||.|-++|+..-|||-. |--+|=|.|-| .+.||+.|..+++
T Consensus 30 iEA~~wY~qR~~~tKD~~~r~ImehnrdeE~eHa~mlLEwlrR~~p~wd 78 (103)
T COG3461 30 IEAMMWYDQRADATKDEDLRAIMEHNRDEEKEHAAMLLEWLRRHDPAWD 78 (103)
T ss_pred HHHHHHHHHHhhccccHhHHHHHHHcccHHHHHHHHHHHHHHHcCchHH
Confidence 4899999999999999853 22233333333 2457777766654
No 89
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=33.84 E-value=82 Score=31.39 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=33.2
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 006549 596 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 636 (641)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (641)
++=|+.|+..|.+|+.--+.-+|.++.||..|..|+.-+|.
T Consensus 125 ~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~ 165 (194)
T PF08614_consen 125 LAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEE 165 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888888888888888999999999999887763
No 90
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=33.46 E-value=45 Score=33.90 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=15.3
Q ss_pred chHHHHHHhhhhhhHHHHHHHHHHHHH
Q 006549 595 SIPWLERRMHYLKDEMLMVEARLERMW 621 (641)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (641)
+|-=.|+.+..||+++...|++|+.|-
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li 67 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELI 67 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555553
No 91
>PF03317 ELF: ELF protein; InterPro: IPR004990 This is a family of hypothetical proteins from cereal crops.
Probab=33.10 E-value=55 Score=33.14 Aligned_cols=44 Identities=27% Similarity=0.253 Sum_probs=35.3
Q ss_pred CcchHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 006549 593 AESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 636 (641)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (641)
+.+-.|+|---+-+-||+.-+.|+|||--|||+.+-=+++|+.|
T Consensus 238 ss~Rr~~Eveqrirw~~I~rs~a~ler~e~~h~l~lf~~ed~rr 281 (284)
T PF03317_consen 238 SSARRCLEVEQRIRWEEIPRSKASLERAEHEHALDLFKSEDLRR 281 (284)
T ss_pred hhhhHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHHhhhhhhc
Confidence 34556876555556799999999999999999999888888643
No 92
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=32.67 E-value=1.4e+02 Score=34.53 Aligned_cols=81 Identities=19% Similarity=0.257 Sum_probs=62.1
Q ss_pred EEEe-ecceeceEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCCeEEEEecC-eEEEEeccCCHHHHHH
Q 006549 88 CAFQ-ESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAG-KKYFFASFLSRDEAFK 165 (641)
Q Consensus 88 CaL~-r~i~l~GrLYIS~~~iCF~S~ifg~~tk~~Ip~~dI~~I~K~kta~i~pnaI~I~T~~-~k~~F~SF~~RD~ay~ 165 (641)
|.|. +.....|+|=|+++-|.|...-=| .-+.||-.||..++=.+.+ ...+|.|.|++ .-|-|..| ||.-++
T Consensus 10 iyl~~~G~~~~G~lkit~~gi~~K~~~gg--k~~~v~~sei~~~~w~k~~--r~~~LrV~tk~g~~~~~~GF--~d~d~~ 83 (615)
T KOG0526|consen 10 IYLEVSGHLKPGTLKITESGIGFKNSKGG--KVVTVPASEIDKVKWQKGV--RGYGLRVFTKDGGVYRFDGF--RDDDLE 83 (615)
T ss_pred eEEecccccccceEEEccCceeEeeCCCC--ceEEeehHHhhhhhhhhhc--cccceEEEccCCceEEecCc--CHHHHH
Confidence 5554 345788999999999999854333 4568899999998877643 45799999985 78999999 777788
Q ss_pred HHHHHHHhc
Q 006549 166 LITDGWLQH 174 (641)
Q Consensus 166 ~I~~~w~~~ 174 (641)
.|.++.+.+
T Consensus 84 ~L~~ff~~~ 92 (615)
T KOG0526|consen 84 KLKSFFSSN 92 (615)
T ss_pred HHHHHHHHh
Confidence 888776553
No 93
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=32.52 E-value=90 Score=25.83 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=26.9
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006549 600 ERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDI 634 (641)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (641)
-.++..++.|+...+.+++.++.|..-|+.+++.|
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777888888888888888888888877776
No 94
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=32.24 E-value=85 Score=28.50 Aligned_cols=35 Identities=11% Similarity=0.174 Sum_probs=31.9
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006549 601 RRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 635 (641)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (641)
.+.+.|+.|..-.++++++++++-+.|+.++++|.
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999998875
No 95
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=31.99 E-value=58 Score=28.12 Aligned_cols=29 Identities=24% Similarity=0.325 Sum_probs=23.3
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 006549 599 LERRMHYLKDEMLMVEARLERMWHEHAVL 627 (641)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (641)
|.+--..||+|.++.||.|+.++.||--.
T Consensus 5 i~eEn~~Lk~eiqkle~ELq~~~~~~qIk 33 (76)
T PF07334_consen 5 IQEENARLKEEIQKLEAELQQNKREFQIK 33 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 44555679999999999999999997543
No 96
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=31.93 E-value=43 Score=37.30 Aligned_cols=35 Identities=11% Similarity=0.422 Sum_probs=31.3
Q ss_pred CCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 006549 592 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAV 626 (641)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (641)
...+++||++|+..+++++.-+|.+|+..|.++..
T Consensus 169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i 203 (444)
T TIGR03017 169 AQKAALWFVQQIAALREDLARAQSKLSAYQQEKGI 203 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44579999999999999999999999999998744
No 97
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=31.57 E-value=3.2e+02 Score=27.98 Aligned_cols=51 Identities=6% Similarity=0.012 Sum_probs=39.3
Q ss_pred CCeEEEEEeEeeCCCCCCC---ceEEEEEEEEEecCCCCCCceEEEEEEEEEEeecc
Q 006549 366 NSHLVIETSQEVHDVPYGD---YFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKT 419 (641)
Q Consensus 366 ~~~~VVetst~t~DVPYGD---~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT 419 (641)
+.++++..+..-+++|.-. .-...++|.|++.++ ++|+|.-.+++.|.+++
T Consensus 126 g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g~---g~s~ltyi~rvD~rG~~ 179 (205)
T cd08907 126 GGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCGM---GRSRLTHICRADLRGRS 179 (205)
T ss_pred CCEEEEEecccCCcCCCCCCeEEEEEeccEEEEECCC---CCeEEEEEEEeCCCCCC
Confidence 4567778888778887653 455678899999863 48999999999997765
No 98
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=31.49 E-value=2.5e+02 Score=24.76 Aligned_cols=75 Identities=16% Similarity=0.322 Sum_probs=45.9
Q ss_pred EEEEEeecceeceEEEEecceEEEEeccCCceeEEEEecccccccccccc--ccccCCeEEEEecC---eEEEEeccCCH
Q 006549 86 FNCAFQESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKT--AGIFPNAIEIFAAG---KKYFFASFLSR 160 (641)
Q Consensus 86 f~CaL~r~i~l~GrLYIS~~~iCF~S~ifg~~tk~~Ip~~dI~~I~K~kt--a~i~pnaI~I~T~~---~k~~F~SF~~R 160 (641)
..|.+.. -+|-||..++.+-|-. .+--+.|+++||..|.=... ...-.--+.|.+++ ..+.|++. +|
T Consensus 4 V~c~~ka---~~g~L~pl~~~l~f~~----~kP~~~i~~~dI~~v~feRv~~~~~ktFDl~v~~k~~~~~~~~fs~I-~~ 75 (95)
T PF08512_consen 4 VKCSYKA---NEGFLYPLEKCLLFGL----EKPPFVIPLDDIESVEFERVSSFSSKTFDLVVILKDYEGPPHEFSSI-DR 75 (95)
T ss_dssp EEEEETT---EEEEEEEESSEEEEEC----SSS-EEEEGGGEEEEEEE--ESSSSSEEEEEEEETT-TS-EEEEEEE-EG
T ss_pred eeEeccc---cCEEEEEccceEEEec----CCCeEEEEhhHeeEEEEEecccCcceEEEEEEEEecCCCCcEEEeeE-CH
Confidence 3566554 3699999999665511 13357999999999887542 12222367777764 78999886 44
Q ss_pred HHHHHHHHH
Q 006549 161 DEAFKLITD 169 (641)
Q Consensus 161 D~ay~~I~~ 169 (641)
++ |+.|.+
T Consensus 76 ~e-~~~l~~ 83 (95)
T PF08512_consen 76 EE-YDNLKD 83 (95)
T ss_dssp GG-HHHHHH
T ss_pred HH-HHHHHH
Confidence 43 444544
No 99
>PRK14011 prefoldin subunit alpha; Provisional
Probab=30.95 E-value=89 Score=30.10 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=36.9
Q ss_pred CCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006549 591 RSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQL 631 (641)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (641)
-..||+..+++|+..|..-+.....+|++++.++..|...|
T Consensus 85 ~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L 125 (144)
T PRK14011 85 DVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKEL 125 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999988544
No 100
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=30.80 E-value=5.4e+02 Score=25.48 Aligned_cols=80 Identities=11% Similarity=0.146 Sum_probs=45.8
Q ss_pred EEEEEecCCeEEEE-EeEeeCCCCC-CCceEEE---EEEEEEecCCCCCCceEEEEEEEEEEeecccccchhccchHHHH
Q 006549 359 QKFRVYRNSHLVIE-TSQEVHDVPY-GDYFRVE---GLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEEC 433 (641)
Q Consensus 359 Qki~~~~~~~~VVe-tst~t~DVPY-GD~F~Ve---~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ 433 (641)
+....+++..|++. .+...+..|- -++-+.+ +.|.+++...+. ++|.+..++.+...+ .+=+..+.+.+.+.+
T Consensus 117 ~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~-~~t~~~~~~~~DpkG-~iP~~lvn~~~~~~~ 194 (206)
T cd08867 117 VYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSP-DKSFLVLYVQTDLRG-MIPQSLVESAMPSNL 194 (206)
T ss_pred EEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCC-CceEEEEEEEeccCC-CCcHHHHHhhhhhhH
Confidence 43344555445443 4444456654 3545444 568888765332 489999998888854 555666665555555
Q ss_pred HHHHHHH
Q 006549 434 RDVYAMW 440 (641)
Q Consensus 434 ke~~~~w 440 (641)
-+.+..+
T Consensus 195 ~~~~~~l 201 (206)
T cd08867 195 VNFYTDL 201 (206)
T ss_pred HHHHHHH
Confidence 5544443
No 101
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=28.85 E-value=5.9e+02 Score=25.35 Aligned_cols=149 Identities=11% Similarity=0.035 Sum_probs=75.8
Q ss_pred eeeeeEEecCHHHHHhhhccCCchhHHHHHHHHcCCcceeeccccccCCCceeEEEEEE-EeeeeccCCceeeeeEEEEE
Q 006549 283 KVAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQ-HPIKVYFGAKFGSCKETQKF 361 (641)
Q Consensus 283 ~v~e~~fpisv~~~F~lLFgD~s~~F~~~f~~~~g~~di~~spW~~~~~~~~~R~isY~-~pl~~piGPK~t~c~e~Qki 361 (641)
.-++.++++|+..+..++..-+ ....+...+..... +... +....+.|. .-...|++.+...+ ..+.+
T Consensus 48 ~k~e~~i~~~~~~~~~vl~d~~---~~~~W~p~~~~~~~-l~~~------~~~~~v~y~~~~~PwPv~~RD~v~-~~~~~ 116 (215)
T cd08877 48 LRMEGEIDGPLFNLLALLNEVE---LYKTWVPFCIRSKK-VKQL------GRADKVCYLRVDLPWPLSNREAVF-RGFGV 116 (215)
T ss_pred EEEEEEecCChhHeEEEEehhh---hHhhhcccceeeEE-Eeec------CCceEEEEEEEeCceEecceEEEE-EEEEE
Confidence 3467889999999998875432 33333322111110 1111 111234443 22223344543322 23444
Q ss_pred EEe-cCCeEEEEEeEeeC--C--------CCCCC-c----eEEEEEEEEEecCCCCCCceEEEEEEEEEEeecccccchh
Q 006549 362 RVY-RNSHLVIETSQEVH--D--------VPYGD-Y----FRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKI 425 (641)
Q Consensus 362 ~~~-~~~~~VVetst~t~--D--------VPYGD-~----F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~I 425 (641)
... +++.++|......+ + +|-.+ - -.....|.|++.++ ++|++...+.+.-..+-+=+.+|
T Consensus 117 ~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~---~~t~v~~~~~~DP~g~~IP~~li 193 (215)
T cd08877 117 DRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISP---TKCYLRFVANVDPKMSLVPKSLL 193 (215)
T ss_pred eeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCC---CCeEEEEEEEcCCCcccCCHHHH
Confidence 333 45556655443321 1 56554 2 34567799998753 38999999888865441224455
Q ss_pred ccchHHHHHHHHHHHHHHHH
Q 006549 426 VQSTLEECRDVYAMWIGMAH 445 (641)
Q Consensus 426 Ekst~~g~ke~~~~wv~~a~ 445 (641)
..-+.+-....+..+.++++
T Consensus 194 N~~~k~~~~~~~~~l~k~~~ 213 (215)
T cd08877 194 NFVARKFAGLLFEKIQKAAK 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 55455555555665555553
No 102
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=28.82 E-value=49 Score=39.73 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=31.1
Q ss_pred CCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 006549 591 RSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAV 626 (641)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (641)
-+..+.+||++|+..|++++..+|++|+..|.++..
T Consensus 191 ~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l 226 (754)
T TIGR01005 191 SNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDL 226 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 355689999999999999999999999999876544
No 103
>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices.
Probab=28.61 E-value=1.9e+02 Score=23.45 Aligned_cols=68 Identities=21% Similarity=0.219 Sum_probs=46.5
Q ss_pred EEEEecceEEEEeccCCceeEEEEecccccccccccccc---ccCCeEEEEecCeE--EEEeccCCHHHHHHHH
Q 006549 99 HMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAG---IFPNAIEIFAAGKK--YFFASFLSRDEAFKLI 167 (641)
Q Consensus 99 rLYIS~~~iCF~S~ifg~~tk~~Ip~~dI~~I~K~kta~---i~pnaI~I~T~~~k--~~F~SF~~RD~ay~~I 167 (641)
+.+++++.|...+.+|+ .+...||+..|.+|+-..+.. +--..|.|.+.+.. -.-..+.+.++|..+.
T Consensus 5 ~y~i~~~~l~i~~G~~~-~~~~~i~~~~Iq~v~~~q~~~~r~~g~~~i~i~~~~~~~~~~~i~~~~~~~a~~i~ 77 (80)
T PF03703_consen 5 GYTITDDRLIIRSGLFS-KRTTIIPLDRIQSVSIKQNPLQRLFGLGTIKIDTAGGSGEKIEIPFLSIEDAEEIY 77 (80)
T ss_pred EEEEECCEEEEEECeEE-EEEEEEEhhHeEEEEEEcCHHHHhCccEEEEEEECCCCCceeEEecCCHHHHHHHH
Confidence 37789999999998887 556789999999999876532 11246777765422 1444556666665543
No 104
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=28.43 E-value=3.3e+02 Score=22.33 Aligned_cols=63 Identities=22% Similarity=0.309 Sum_probs=42.9
Q ss_pred EEEEecceEEEEeccC---CceeEEEEeccccccccccccc-----cccCCeEEEEecCe-EEEEeccCCHHHH
Q 006549 99 HMYLFVHFICFYSNIF---GFETKKIIPFYEVTAVRRAKTA-----GIFPNAIEIFAAGK-KYFFASFLSRDEA 163 (641)
Q Consensus 99 rLYIS~~~iCF~S~if---g~~tk~~Ip~~dI~~I~K~kta-----~i~pnaI~I~T~~~-k~~F~SF~~RD~a 163 (641)
.+.+..+.|.+|.+-- ...-...|++.++ .|...... .-.++.+.|.+.+. .|.|. .-+.++.
T Consensus 21 ~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~-~~s~~~~ 92 (104)
T PF00169_consen 21 YFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFS-AESEEER 92 (104)
T ss_dssp EEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETTSEEEEEE-ESSHHHH
T ss_pred EEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCCCcEEEEE-cCCHHHH
Confidence 3456778888887654 4566789999999 55554333 34678999999875 77775 4455553
No 105
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=28.23 E-value=1.4e+02 Score=28.15 Aligned_cols=45 Identities=13% Similarity=0.252 Sum_probs=41.1
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhc
Q 006549 596 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKR 640 (641)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (641)
+..|...|...+..+..++.++|.-|.+..--....+-||+|+.+
T Consensus 73 l~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ea~~~~k~~ekLker 117 (146)
T PRK07720 73 VTNLERTIDHYQLLVMQAREQMNRKQQDLTEKNIEVKKYEKMKEK 117 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999988888899999999864
No 106
>PF06017 Myosin_TH1: Myosin tail; InterPro: IPR010926 These proteins share a region of sequence similarity with the tail of myosin (for example O00159 from SWISSPROT). Myosins act as molecular motors. ; GO: 0003774 motor activity, 0016459 myosin complex
Probab=27.69 E-value=2.2e+02 Score=28.39 Aligned_cols=103 Identities=13% Similarity=0.180 Sum_probs=66.7
Q ss_pred hhhhhhhCC-CCCCCeeeeEEEEEEe---ecceeceE-EEEecceEEEEe-----ccCCceeEEEEeccccccccccccc
Q 006549 67 SEEYRQLFR-LPSEEVLVQDFNCAFQ---ESILLQGH-MYLFVHFICFYS-----NIFGFETKKIIPFYEVTAVRRAKTA 136 (641)
Q Consensus 67 n~~F~~lF~-LP~~E~Li~~f~CaL~---r~i~l~Gr-LYIS~~~iCF~S-----~ifg~~tk~~Ip~~dI~~I~K~kta 136 (641)
+..+.+++. ...+|.++ |+|... |..-.+-| |.||+++|+.-. .......+-.||+.+|..|.-...
T Consensus 34 ~~~~~~~~~~~~~~e~vl--Fs~~v~K~nr~~K~~~R~livT~~~iY~l~~~~~~~~~~~~~kr~i~l~~I~~IsvS~~- 110 (199)
T PF06017_consen 34 NPKLQKILEKNEGDEKVL--FSDRVQKYNRRNKPQPRILIVTDKAIYLLDQRKVKDPKKYKLKRRIPLSDITGISVSPL- 110 (199)
T ss_pred cccHHHHHHhccCCcceE--EEEEEEEecCCCCccceEEEEeCCeEEEEEEeecCCceeeEEEeccCcccccEEEEccC-
Confidence 445666664 22244444 566654 33333334 588999999886 555567788999999999987653
Q ss_pred cccCCeEEEEe-cCeEEEEeccCCHHHHHHHHHHHHHhcC
Q 006549 137 GIFPNAIEIFA-AGKKYFFASFLSRDEAFKLITDGWLQHG 175 (641)
Q Consensus 137 ~i~pnaI~I~T-~~~k~~F~SF~~RD~ay~~I~~~w~~~~ 175 (641)
-.+-+.|.. ....++|.+. .+-+....|..++++..
T Consensus 111 --~D~~~vihv~~~~D~il~~~-~k~Elv~~L~~~~~~~~ 147 (199)
T PF06017_consen 111 --SDNFFVIHVPGEGDLILESD-FKTELVTILCKAYKKAT 147 (199)
T ss_pred --CCCEEEEEECCCCCEEEEeC-cHHHHHHHHHHHHHHHh
Confidence 234455554 4467888774 56777788888887644
No 107
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.69 E-value=87 Score=31.33 Aligned_cols=23 Identities=43% Similarity=0.533 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHH
Q 006549 613 VEARLERMWHEHAVLRAQLKDIE 635 (641)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~ 635 (641)
.|||++.+++|.+.||+.|.+|.
T Consensus 190 learv~aLe~eva~L~~rld~ll 212 (215)
T COG3132 190 LEARVEALEQEVAELRARLDSLL 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999888764
No 108
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=27.60 E-value=89 Score=35.75 Aligned_cols=38 Identities=18% Similarity=0.421 Sum_probs=27.9
Q ss_pred chHHHHHHhhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHh
Q 006549 595 SIPWLERRMHYLKDEMLMV-------EARLERMWHEHAVLRAQLK 632 (641)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 632 (641)
..+=|||++..||-||.|. |++|+.|..|+..||+|++
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999888743 5566666677777877774
No 109
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=27.51 E-value=1.1e+02 Score=31.96 Aligned_cols=41 Identities=22% Similarity=0.309 Sum_probs=36.1
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HhhHHHhh
Q 006549 598 WLERRMHYLKDEMLMVEARLERMWHEHAVLRAQ-LKDIEQLH 638 (641)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 638 (641)
=+.+|...|-+|+......+..+|.|.+-||+- +|..|+.|
T Consensus 90 RFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 90 RFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999987 88888887
No 110
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=27.45 E-value=37 Score=32.94 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=28.5
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006549 599 LERRMHYLKDEMLMVEARLERMWHEHAVLRAQLK 632 (641)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (641)
||.-+..+.+++..++..++++++++..|+..+.
T Consensus 44 lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 77 (151)
T PF14584_consen 44 LEDLLNELFDQIDELKEELEELEKRIEELEEKLR 77 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888999999999999988888887765
No 111
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=27.45 E-value=1.2e+02 Score=24.56 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=19.2
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 006549 602 RMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 636 (641)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (641)
|+..|-.|+-..+.-+.-+|.|..-|+..++.+++
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555566666666665555543
No 112
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=27.38 E-value=2.8e+02 Score=30.49 Aligned_cols=97 Identities=18% Similarity=0.241 Sum_probs=71.2
Q ss_pred CCCCCCeeeeEEEEEEe--ecceeceEEEEecceEEEEeccCCceeEEEEeccccccccccccccccCCeEEEEec--Ce
Q 006549 75 RLPSEEVLVQDFNCAFQ--ESILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAA--GK 150 (641)
Q Consensus 75 ~LP~~E~Li~~f~CaL~--r~i~l~GrLYIS~~~iCF~S~ifg~~tk~~Ip~~dI~~I~K~kta~i~pnaI~I~T~--~~ 150 (641)
.|-+.|.++..+.-.+. .+.---|.+++|+-.+-.|+++- -.-.+.|||-+|..|....+ . |--|+.|.|. ..
T Consensus 150 ~lLp~E~v~~~~~gVwnls~dqGnLGtfivTNvRiVW~A~~n-e~fNVSiPylqi~~i~ir~S-K-fG~aLVieT~~~sG 226 (339)
T PF07289_consen 150 KLLPQEQVYSRVNGVWNLSSDQGNLGTFIVTNVRIVWFADMN-ESFNVSIPYLQIKSIRIRDS-K-FGPALVIETSESSG 226 (339)
T ss_pred eeCCccEEeeccCCEEEcccCCCceeEEEEeeeEEEEEccCC-ccccccchHhhheeeeeecc-c-cceEEEEEEeccCC
Confidence 34467788877776654 33333399999999999999753 35678999999999998876 2 4569999875 36
Q ss_pred EEEEecc-CC----HHHHHHHHHHHHHhcC
Q 006549 151 KYFFASF-LS----RDEAFKLITDGWLQHG 175 (641)
Q Consensus 151 k~~F~SF-~~----RD~ay~~I~~~w~~~~ 175 (641)
.|+. .| ++ =++.|+-|..||+...
T Consensus 227 gYVL-GFRvDP~ErL~~l~KEi~sLh~vy~ 255 (339)
T PF07289_consen 227 GYVL-GFRVDPEERLQELFKEIQSLHKVYS 255 (339)
T ss_pred cEEE-EEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 7876 44 34 2678888888888764
No 113
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.51 E-value=90 Score=38.26 Aligned_cols=44 Identities=30% Similarity=0.379 Sum_probs=34.9
Q ss_pred CCcchHHHHHHhhhhhh-----HH-----HHHHHHHHHHHHHHHHHHHHHhhHH
Q 006549 592 SAESIPWLERRMHYLKD-----EM-----LMVEARLERMWHEHAVLRAQLKDIE 635 (641)
Q Consensus 592 ~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (641)
-+||++|=++-...|-| || .|||.|+|.|+.|..-||..++.||
T Consensus 292 ~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~dele 345 (1243)
T KOG0971|consen 292 AKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELE 345 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889998887666655 44 4899999999999999998887554
No 114
>PRK09039 hypothetical protein; Validated
Probab=26.24 E-value=99 Score=33.86 Aligned_cols=41 Identities=24% Similarity=0.187 Sum_probs=31.9
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 006549 596 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 636 (641)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (641)
++=|++++..+|.+..-+-.+++++++|.+.||+||..||.
T Consensus 118 ~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~ 158 (343)
T PRK09039 118 AGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEA 158 (343)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456777777777777777889999999999999888764
No 115
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=26.24 E-value=1.4e+02 Score=27.08 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=37.6
Q ss_pred CCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006549 592 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDI 634 (641)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (641)
-.|+++=|++|+..+.++....|.+++.++..+.-+..+|..+
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999988887654
No 116
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=26.06 E-value=1.1e+02 Score=27.78 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=38.3
Q ss_pred CCcchHHHHHHhhhhhhHHHHHHHHHHHH--HHHHHHHHHHHhhHH
Q 006549 592 SAESIPWLERRMHYLKDEMLMVEARLERM--WHEHAVLRAQLKDIE 635 (641)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 635 (641)
+++.++=|+.|+..+..=+..+|.+|+-| ++|+.-|+..|..++
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~ 78 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELR 78 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 35777779999999999999999999999 999999998888775
No 117
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=25.68 E-value=23 Score=32.60 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=0.4
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Q 006549 599 LERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLH 638 (641)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (641)
|+...--+-.+..-.|+.+++|+.|.+-||..+..||...
T Consensus 4 Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~ 43 (118)
T PF08286_consen 4 LDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQE 43 (118)
T ss_dssp ---------------------------------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445566777889999999999999999999998654
No 118
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=25.65 E-value=1.3e+02 Score=32.55 Aligned_cols=45 Identities=24% Similarity=0.277 Sum_probs=21.5
Q ss_pred CcchHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 006549 593 AESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQL 637 (641)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (641)
-|.++||+|-+.-..-|...----...+|+|++.||.+|+..+.|
T Consensus 125 eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdel 169 (302)
T PF09738_consen 125 EETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDEL 169 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677766653322222222222334555555555555555443
No 119
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=25.29 E-value=1.4e+02 Score=26.42 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=30.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006549 603 MHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 635 (641)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (641)
+..|+.|+..+|..|+.-.|..-.|+.+++.|+
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999997
No 120
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=25.00 E-value=1.3e+02 Score=28.81 Aligned_cols=46 Identities=26% Similarity=0.351 Sum_probs=30.9
Q ss_pred CCcchHHHHHHhhhhhhHHHHHHHHHHHH--------HHHHHHHHHHHhhHHHh
Q 006549 592 SAESIPWLERRMHYLKDEMLMVEARLERM--------WHEHAVLRAQLKDIEQL 637 (641)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 637 (641)
|-+++.|.=++|..|+.|+.-.|+.|+.. ..+.+-|++.++.|+.+
T Consensus 1 ~~~~a~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~ 54 (149)
T PF07352_consen 1 DREEADWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGL 54 (149)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999888877633 23334455555555543
No 121
>PRK04406 hypothetical protein; Provisional
Probab=24.79 E-value=2.1e+02 Score=24.45 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=28.5
Q ss_pred HHHHhhhhhhHHHHHHHHHHH-------HHHHHHHHHHHHhhH-HHhhh
Q 006549 599 LERRMHYLKDEMLMVEARLER-------MWHEHAVLRAQLKDI-EQLHK 639 (641)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~ 639 (641)
++.||..|-.-+.--|..+|. .+++...|+.+|+.| +||+.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667777776666666666665 477788888888877 56654
No 122
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=24.44 E-value=3.6e+02 Score=21.33 Aligned_cols=64 Identities=20% Similarity=0.332 Sum_probs=41.2
Q ss_pred eEEEEecceEEEEeccCC---ceeEEEEeccccccccccccccccCCeEEEEecC-eEEEEeccCCHHHH
Q 006549 98 GHMYLFVHFICFYSNIFG---FETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAG-KKYFFASFLSRDEA 163 (641)
Q Consensus 98 GrLYIS~~~iCF~S~ifg---~~tk~~Ip~~dI~~I~K~kta~i~pnaI~I~T~~-~k~~F~SF~~RD~a 163 (641)
..+++..+.+.++....+ ......|++.+ ..|.......-.++++.|.+.+ ..|.|. ..+.+++
T Consensus 19 ~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~-~~v~~~~~~~~~~~~f~i~~~~~~~~~~~-~~s~~~~ 86 (96)
T cd00821 19 RWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSG-AEVEESPDDSGRKNCFEIRTPDGRSYLLQ-AESEEER 86 (96)
T ss_pred EEEEEECCEEEEEECCCCCcCCCCcceEEcCC-CEEEECCCcCCCCcEEEEecCCCcEEEEE-eCCHHHH
Confidence 456667777777776554 45667888888 5555544322246899999887 778775 3344443
No 123
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=24.29 E-value=2.4e+02 Score=32.38 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=35.3
Q ss_pred CCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006549 588 LGQRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKD 633 (641)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (641)
.++-..|-|+=|--++..|+.||.-+++.=++++.|-..||....+
T Consensus 53 egDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~ 98 (472)
T TIGR03752 53 EGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQS 98 (472)
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456778899999999999999998888777777777777664443
No 124
>cd04781 HTH_MerR-like_sg6 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 6) with at least two conserved cysteines present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, an
Probab=24.15 E-value=1.6e+02 Score=26.88 Aligned_cols=47 Identities=11% Similarity=0.131 Sum_probs=29.7
Q ss_pred CCCCcchHHHHHHhhhhhh--------------------HHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 006549 590 QRSAESIPWLERRMHYLKD--------------------EMLMVEARLERMWHEHAVLRAQLKDIEQL 637 (641)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (641)
-|+.+.+.||+ .|..||+ ...+++++++.+.++...|....+.|+.+
T Consensus 37 ~Y~~~~l~~l~-~I~~lr~~G~~L~eI~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~L~~~ 103 (120)
T cd04781 37 QYDPQVLDRLA-LIALGRAAGFSLDEIQAMLSHDGKPPIDRQLLKAKAAELDQQIQRLQAMRELLRHV 103 (120)
T ss_pred ecCHHHHHHHH-HHHHHHHcCCCHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999997 5555553 12455556666666666666655555544
No 125
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=23.70 E-value=1.1e+02 Score=31.94 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 006549 608 DEMLMVEARLERMWHEHAVLRAQLKDIEQL 637 (641)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (641)
+||..+|.+|-+.|.|...|+.|++.|++-
T Consensus 162 ~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 162 EDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678899999999999999999999998864
No 126
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=23.40 E-value=1.7e+02 Score=28.42 Aligned_cols=65 Identities=14% Similarity=0.281 Sum_probs=38.8
Q ss_pred EeeCCCCCCCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeecccccchhccchHHHHHHHHHHHHHHHHH
Q 006549 375 QEVHDVPYGDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYAMWIGMAHD 446 (641)
Q Consensus 375 t~t~DVPYGD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~g~ke~~~~wv~~a~e 446 (641)
++..|=||.- ..++|.+++.+. +.|++.....-+| |+.++...|-.-.-.-.....+.+.+.|++
T Consensus 77 ~~l~~GPFk~---L~~~W~F~pl~~---~~ckV~f~ldfeF-~s~ll~~~~g~~f~~~a~~mv~aF~kRA~~ 141 (146)
T COG2867 77 MKLIDGPFKY---LKGGWQFTPLSE---DACKVEFFLDFEF-KSRLLGALIGPVFKRLASKMVEAFEKRAKE 141 (146)
T ss_pred hhhhcCChhh---hcCceEEEECCC---CceEEEEEEEeee-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666664 999999999753 3788888777777 455555544433333333333444444443
No 127
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=23.21 E-value=7.8e+02 Score=25.04 Aligned_cols=51 Identities=12% Similarity=0.103 Sum_probs=35.7
Q ss_pred CCeEEEEEeEeeCCCCCCCceEE---EEEEEEEecCCCCCCceEEEEEEEEEEeecc
Q 006549 366 NSHLVIETSQEVHDVPYGDYFRV---EGLWDVMRDDGGSKEGCILRVYVNVAFSKKT 419 (641)
Q Consensus 366 ~~~~VVetst~t~DVPYGD~F~V---e~R~~It~~~~~sk~~C~L~V~~~V~F~KsT 419 (641)
+.+.++..+..-++.|--++.+. .++|.|++.++ ++|+|.--+.+.+.++.
T Consensus 126 G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~---g~trvt~i~~vDpkG~~ 179 (205)
T cd08909 126 GACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGS---GKSRLTHICRVDLKGHS 179 (205)
T ss_pred CcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCC---CCEEEEEEEEecCCCCC
Confidence 34444555666666777666554 46799999853 48999999999986654
No 128
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=23.19 E-value=1e+02 Score=30.67 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=15.0
Q ss_pred cCCCCCCcchHHHHHHhhhhh
Q 006549 587 GLGQRSAESIPWLERRMHYLK 607 (641)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~ 607 (641)
|-.-|+.+.|+||+.-.++..
T Consensus 34 G~R~y~~~dl~~L~~I~~l~~ 54 (175)
T PRK13182 34 GHYIFTEEDLQLLEYVKSQIE 54 (175)
T ss_pred CCEEECHHHHHHHHHHHHHHH
Confidence 445689999999986554443
No 129
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=23.12 E-value=5.5e+02 Score=23.01 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=25.0
Q ss_pred CCceEEEEEEEEEecCCCCCCceEEEEEEEEEEeec
Q 006549 383 GDYFRVEGLWDVMRDDGGSKEGCILRVYVNVAFSKK 418 (641)
Q Consensus 383 GD~F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~Ks 418 (641)
++....+..|.+.+.+. ++|+|.....+.+...
T Consensus 81 ~~~~~~~g~w~~~~~~~---~~t~Vt~~~~~~~~~~ 113 (142)
T cd08861 81 PPVASMSGEWRFEPLGG---GGTRVTLRHDFTLGID 113 (142)
T ss_pred CChhhheeEEEEEECCC---CcEEEEEEEEEEECCC
Confidence 34456788999998752 3799999888888643
No 130
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=22.78 E-value=1.9e+02 Score=27.63 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=37.2
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 006549 596 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQL 637 (641)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (641)
+.|+..|.+.|+.+..-+...+..++.+...++.||..|..+
T Consensus 14 ~~~~~~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~ 55 (135)
T TIGR03495 14 LGWQSQRLRNARADLERANRVLKAQQAELASKANQLIVLLAL 55 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 569999999999999999999999999999999999887654
No 131
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=22.69 E-value=1.2e+02 Score=24.44 Aligned_cols=24 Identities=29% Similarity=0.453 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Q 006549 611 LMVEARLERMWHEHAVLRAQLKDI 634 (641)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~ 634 (641)
.-|.++|..++.|-..||++|+.+
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 347889999999999999998765
No 132
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=22.40 E-value=1.7e+02 Score=31.62 Aligned_cols=43 Identities=30% Similarity=0.396 Sum_probs=36.1
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Q 006549 596 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLH 638 (641)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (641)
-.|-+=|+.++..=..-.+.+++.|+.|.+.|.++++.|..+.
T Consensus 137 ~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~ 179 (325)
T PF08317_consen 137 KMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELL 179 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999887777888999999999999999888876553
No 133
>PF14182 YgaB: YgaB-like protein
Probab=22.09 E-value=1.2e+02 Score=26.41 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHh
Q 006549 614 EARLERMWHEHAVLRAQLKDIEQL 637 (641)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~ 637 (641)
||.|..+|.|.+..|.+|+.+.++
T Consensus 39 ea~l~~i~~EI~~mkk~Lk~Iq~~ 62 (79)
T PF14182_consen 39 EAELHSIQEEISQMKKELKEIQRV 62 (79)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999988764
No 134
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=22.02 E-value=1.7e+02 Score=25.96 Aligned_cols=47 Identities=23% Similarity=0.351 Sum_probs=32.7
Q ss_pred CCCCcchHHHHHHhhhhh----------------hHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 006549 590 QRSAESIPWLERRMHYLK----------------DEMLMVEARLERMWHEHAVLRAQLKDIEQL 637 (641)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (641)
-|+.+.++||.. |..|+ +...+++.+++.++++...|+..++.|+.|
T Consensus 38 ~Y~~~dl~~l~~-I~~l~~~G~~l~ei~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 100 (102)
T cd04775 38 LYSEADLSRLEK-IVFLQAGGLPLEEIAGCLAQPHVQAILEERLQSLNREIQRLRQQQQVLAAI 100 (102)
T ss_pred eeCHHHHHHHHH-HHHHHHCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999874 22222 234567777788888888887777777765
No 135
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=21.96 E-value=1e+02 Score=35.04 Aligned_cols=34 Identities=15% Similarity=0.316 Sum_probs=29.9
Q ss_pred CCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 006549 592 SAESIPWLERRMHYLKDEMLMVEARLERMWHEHA 625 (641)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (641)
...+.+||++++..+++++.-+|..|+..|.++.
T Consensus 159 ~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~ 192 (498)
T TIGR03007 159 SDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENG 192 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3458999999999999999999999999887654
No 136
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.92 E-value=1.3e+02 Score=30.77 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=27.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhh
Q 006549 605 YLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHK 639 (641)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (641)
.+|+|| |-.++.||.++..||.||+.++..|+
T Consensus 96 q~k~Ei---ersi~~a~~kie~lkkql~eaKi~r~ 127 (222)
T KOG3215|consen 96 QKKLEI---ERSIQKARNKIELLKKQLHEAKIVRL 127 (222)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456776 78899999999999999999988654
No 137
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=21.91 E-value=1.2e+02 Score=37.91 Aligned_cols=50 Identities=14% Similarity=0.245 Sum_probs=43.1
Q ss_pred CCCCcchHHHHHHhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHhhHHHhhh
Q 006549 590 QRSAESIPWLERRMHYLKDEM-LMVEARLERMWHEHAVLRAQLKDIEQLHK 639 (641)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (641)
..-++.+.-|+|+|.+++.+- .-+..+++.++.++.||+.+.+.||.+..
T Consensus 368 ~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~ 418 (1074)
T KOG0250|consen 368 RKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQIN 418 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778889999999998776 88999999999999999999999987653
No 138
>PRK09343 prefoldin subunit beta; Provisional
Probab=21.84 E-value=1.9e+02 Score=26.88 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=38.6
Q ss_pred CcchHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006549 593 AESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDI 634 (641)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (641)
.|++.=|++|+.++..++.-.|.+.++++..+.-+..+|..+
T Consensus 70 ~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 70 TKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999988765
No 139
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=21.70 E-value=2.2e+02 Score=26.76 Aligned_cols=45 Identities=13% Similarity=0.268 Sum_probs=39.8
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhc
Q 006549 596 IPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLHKR 640 (641)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (641)
|.=|...|.+.+.++..+++++++.|.+...-+...+-||.|+.+
T Consensus 73 i~~L~~~I~~q~~~v~~~~~~ve~~r~~~~~a~~~~k~lEkL~ek 117 (147)
T PRK05689 73 LQQLEKAITQQRQQLTQWTQKVDNARKYWQEKKQRLEALETLQER 117 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788999999999999999999999988888889999999754
No 140
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=21.57 E-value=1.1e+02 Score=30.10 Aligned_cols=46 Identities=17% Similarity=0.375 Sum_probs=29.2
Q ss_pred CCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006549 590 QRSAESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIE 635 (641)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (641)
.++...+.++++++..|.+|+.--+.++.....++..+|.....+.
T Consensus 77 ~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 77 PRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4556677788888887777776666666555555555554444443
No 141
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=21.56 E-value=6.3e+02 Score=23.14 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=19.9
Q ss_pred eEEEEEEEEEecCCCCCCceEEEEEEEEEEe
Q 006549 386 FRVEGLWDVMRDDGGSKEGCILRVYVNVAFS 416 (641)
Q Consensus 386 F~Ve~R~~It~~~~~sk~~C~L~V~~~V~F~ 416 (641)
|.-+.+|.|+..+ ++|+|.....+.+.
T Consensus 86 ~~~~~~~~~~~~~----~gt~vt~~~~~~~~ 112 (146)
T cd07824 86 LEGVGRWTLAPDG----SGTVVRYDWEVRTT 112 (146)
T ss_pred eeEEEEEEEEEcC----CCEEEEEEEEEEcC
Confidence 4457889998753 27998888888773
No 142
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=21.41 E-value=2e+02 Score=26.26 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=35.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 006549 599 LERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 636 (641)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (641)
+++.+.+|++....++..++.|.+++++|+.++..++.
T Consensus 84 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~ 121 (126)
T TIGR00293 84 AEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQ 121 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999988753
No 143
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=21.40 E-value=1.1e+02 Score=25.16 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=15.7
Q ss_pred chHHHHHHhhhhhhHHHHHHHHH
Q 006549 595 SIPWLERRMHYLKDEMLMVEARL 617 (641)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~ 617 (641)
+|+=|+.||-.|.+|+.-.||.+
T Consensus 26 sV~El~eRIalLq~EIeRlkAe~ 48 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAEL 48 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888777766555544
No 144
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=21.40 E-value=1.1e+02 Score=31.79 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=34.5
Q ss_pred hHHHHHH----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Q 006549 596 IPWLERR----MHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLH 638 (641)
Q Consensus 596 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (641)
..||-+| |..|.+.-.-.+..+|+++.|+..||.+|+.|+..+
T Consensus 96 ~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~~~~ 142 (232)
T KOG2483|consen 96 TLSILDKALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLSLPQ 142 (232)
T ss_pred hhHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 5666666 456777788888999999999999999999877443
No 145
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=21.18 E-value=1.2e+02 Score=34.57 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=18.2
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHHH
Q 006549 596 IPWLERRMHYLKDEMLMVEARLERM 620 (641)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (641)
++=+++|++.|+++|...+..++.+
T Consensus 165 ~~L~~~Rl~~L~~qi~~~~~~l~~~ 189 (475)
T PF10359_consen 165 IELIQERLDELEEQIEKHEEKLGEL 189 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3557788888888887777777664
No 146
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=21.11 E-value=1.4e+02 Score=31.16 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=33.3
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Q 006549 601 RRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQLH 638 (641)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (641)
-.|.-|-.||-|||---.|+-+|+..+-+|.++||.|-
T Consensus 113 ekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L 150 (254)
T KOG2196|consen 113 EKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLL 150 (254)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777889999999999999999999999999999863
No 147
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=21.07 E-value=46 Score=35.39 Aligned_cols=7 Identities=14% Similarity=0.254 Sum_probs=3.6
Q ss_pred cccccCC
Q 006549 536 FVKRQSG 542 (641)
Q Consensus 536 ~~~~~~~ 542 (641)
|+|+.+.
T Consensus 3 f~~~~~~ 9 (283)
T TIGR00219 3 FLVKPKL 9 (283)
T ss_pred CCcCCch
Confidence 5555554
No 148
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=21.06 E-value=2e+02 Score=23.76 Aligned_cols=30 Identities=33% Similarity=0.430 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhhHHHhhhc
Q 006549 611 LMVEARLERMWHEHAV-LRAQLKDIEQLHKR 640 (641)
Q Consensus 611 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 640 (641)
+-+|.-|+=|++||+. |+.==..+|+|+++
T Consensus 6 ~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~ 36 (60)
T PF14916_consen 6 QSLEKSILFLQQEHAQTLKGLHAEIERLQKR 36 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777777776 44444456666653
No 149
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=20.69 E-value=1.7e+02 Score=30.26 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=18.9
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006549 599 LERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKD 633 (641)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (641)
++.|+..|++++.....+++..|.+..-+|..|+.
T Consensus 68 ~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 68 LRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555544
No 150
>PF01814 Hemerythrin: Hemerythrin HHE cation binding domain; InterPro: IPR012312 The haemerythrin family is composed of haemerythrin proteins found in invertebrates, and a broader collection of bacterial and archaeal homologues. Haemerythrin is an oxygen-binding protein found in the vascular system and coelemic fluid, or in muscles (myohaemerythrin) in invertebrates []. Many of the homologous proteins found in prokaryotes are multi-domain proteins with signal-transducing domains such as the GGDEF diguanylate cyclase domain (IPR000160 from INTERPRO) and methyl-accepting chemotaxis protein (MCP) signalling domain (IPR004089 from INTERPRO). Most haemerythrins are oxygen-carriers with a bound non-haem iron, but at least one example is a cadmium-binding protein, apparently with a role in sequestering toxic metals rather than in binding oxygen. The prokaryote with the most instances of this domain is Magnetococcus sp. MC-1, a magnetotactic bacterium. Haemerythrins and myohaemerythrins [, ] are small proteins of about 110 to 129 amino acid residues that bind two iron atoms. They are left-twisted 4-alpha-helical bundles, which provide a hydrophobic pocket where dioxygen binds as a peroxo species, interacting with adjacent aliphatic side chains via van der Waals forces []. In both haemerythrins and myohaemerythrins, the active centre is a binuclear iron complex, bound directly to the protein via 7 amino acid side chains [], 5 His, 1 Glu and 1 Asp []. Ovohaemerythrin [], a yolk protein from the leech Theromyzon tessulatum seems to belong to this family of proteins, it may play a role in the detoxification of free iron after a blood meal []. This entry represents a haemerythrin/HHE cation-binding motif that occurs as a duplicated domain in haemerythrin and related proteins. This domain binds iron in haemerythrin, but can bind other metals in related proteins, such as cadmium in a Nereis diversicolor protein (P80255 from SWISSPROT). A bacterial protein, Q7WX96 from SWISSPROT, is a regulator of response to NO, which suggests a different set-up for its metal ligands. A protein from Cryptococcus neoformans (Filobasidiella neoformans) that contains haemerythrin/HHE cation-binding motifs is also involved in NO response []. A Staphylococcus aureus protein (P72360 from SWISSPROT) has been noted to be important when the organism switches to living in environments with low oxygen concentrations; perhaps this protein acts as an oxygen store or scavenger.; PDB: 3CAX_A 3V5Z_B 3U9M_G 3V5Y_A 3U9J_B 3V5X_A 2MHR_A 1A7E_A 1A7D_A 2IGF_P ....
Probab=20.57 E-value=1.9e+02 Score=25.29 Aligned_cols=36 Identities=28% Similarity=0.469 Sum_probs=28.6
Q ss_pred HhhhhhhHHHH----------HHHHHHHHHHHHHHHHHHHhhHHHh
Q 006549 602 RMHYLKDEMLM----------VEARLERMWHEHAVLRAQLKDIEQL 637 (641)
Q Consensus 602 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (641)
+.|+-.||..+ .-+.++.|++||..++..++.|+..
T Consensus 48 ~~H~~~EE~~l~p~l~~~~~~~~~~~~~~~~eH~~~~~~l~~l~~~ 93 (133)
T PF01814_consen 48 RHHHAREEEYLFPALERRDPRGDALIAELRREHEEIRALLDELEEA 93 (133)
T ss_dssp HHHHHHHHHHHHTTHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccchhccccchhhHHHHHHHHHHHHHHHHHH
Confidence 66777888776 2356679999999999999998765
No 151
>PRK02119 hypothetical protein; Provisional
Probab=20.54 E-value=2.9e+02 Score=23.44 Aligned_cols=41 Identities=24% Similarity=0.299 Sum_probs=27.3
Q ss_pred HHHHhhhhhhHHHHHHHHHHH-------HHHHHHHHHHHHhhH-HHhhh
Q 006549 599 LERRMHYLKDEMLMVEARLER-------MWHEHAVLRAQLKDI-EQLHK 639 (641)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~ 639 (641)
++.|+..|-.=+.--|..++. .+++...|+.+|+.| ++|+.
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667777775555555666554 477788888888776 45543
No 152
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=20.42 E-value=2.1e+02 Score=26.73 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=34.8
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 006549 599 LERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDIEQ 636 (641)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (641)
++..+.+|++-...++..++.|..+.++++.+++.+..
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~ 129 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQ 129 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999987754
No 153
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=20.38 E-value=1.7e+02 Score=32.19 Aligned_cols=41 Identities=24% Similarity=0.228 Sum_probs=37.1
Q ss_pred cchHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006549 594 ESIPWLERRMHYLKDEMLMVEARLERMWHEHAVLRAQLKDI 634 (641)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (641)
|-+.|+-..+.-|.++.......-+||+.|+..|.+||+.+
T Consensus 130 el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~ 170 (342)
T PF06632_consen 130 ELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKF 170 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999988999999999999999999876
No 154
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.29 E-value=2e+02 Score=29.94 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=35.9
Q ss_pred CCcchHHHHHHhhhhhhHHHHHHHHHHHHH--------------------HHHHHHHHHHhhHHHhh
Q 006549 592 SAESIPWLERRMHYLKDEMLMVEARLERMW--------------------HEHAVLRAQLKDIEQLH 638 (641)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~ 638 (641)
-.|+..||..=|..|...+...||.+|++. .=..-.|-|+..||.|-
T Consensus 120 k~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lL 186 (233)
T PF04065_consen 120 KEEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLL 186 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999988543 23344566777777653
No 155
>PRK10963 hypothetical protein; Provisional
Probab=20.04 E-value=1.1e+02 Score=31.30 Aligned_cols=26 Identities=12% Similarity=0.339 Sum_probs=14.7
Q ss_pred chHHHHHHhhhhhhHHHHHHHHHHHH
Q 006549 595 SIPWLERRMHYLKDEMLMVEARLERM 620 (641)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (641)
+|-=.|+.+..||++....|.+|+.|
T Consensus 38 aVSL~ErQ~~~LR~r~~~Le~~l~~L 63 (223)
T PRK10963 38 TVSLVEWQMARQRNHIHVLEEEMTLL 63 (223)
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666555555555544
Done!