Query 006549
Match_columns 641
No_of_seqs 221 out of 799
Neff 5.9
Searched_HMMs 29240
Date Tue Mar 26 18:07:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006549.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2178-2181//hhsearch_pdb/006549hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t77_A Lipopolysaccharide-resp 1.0 1 1 31.3 7.5 80 82-162 3-97 (414)
2 1lw3_A Myotubularin-related pr 1.0 1 1 30.0 13.7 98 72-170 77-185 (657)
3 1zsq_A Myotubularin-related pr 1.0 1 1 29.0 14.0 95 74-169 7-112 (528)
4 2cay_A VPS36 PH domain, vacuol 1.0 1 1 28.3 9.2 96 77-175 27-136 (145)
5 2yf0_A Myotubularin-related pr 1.0 1 1 28.1 8.1 73 93-170 22-95 (512)
6 2hth_B Vacuolar protein sortin 1.0 1 1 28.0 12.6 98 76-175 13-132 (140)
7 3p0l_A Steroidogenic acute reg 1.0 1 1 26.6 11.0 149 284-444 58-212 (221)
8 1em2_A MLN64 protein; beta bar 1.0 1 1 24.2 14.9 152 284-447 69-226 (229)
9 1w7p_D VPS36P, YLR417W; ESCRT- 1.0 1 1 23.9 0.0 59 77-135 19-82 (566)
10 1jss_A Stard4, cholesterol-reg 1.0 1 1 23.6 11.9 145 284-442 70-219 (224)
No 1
>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A
Probab=1.00 E-value=1 Score=31.27 Aligned_cols=80 Identities=15% Similarity=0.192 Sum_probs=57.9
Q ss_pred EEEEEEEEEEE-CCEECEEEEEECCEEEEEECC----CC-C---------EEEEEEECCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 54689978964-520114999715547898446----78-5---------038997224422111245455368769999
Q 006549 82 LVQDFNCAFQE-SILLQGHMYLFVHFICFYSNI----FG-F---------ETKKIIPFYEVTAVRRAKTAGIFPNAIEIF 146 (641)
Q Consensus 82 Li~~f~CaL~r-~i~l~GrLYIS~n~iCF~S~i----fg-~---------~tk~vIp~~dI~~I~K~k~a~i~pnaI~I~ 146 (641)
++-.+.|.+.. .....|+|+|+...|+|...- |. . .....+++.+|..|-+..- ...++||+|.
T Consensus 3 v~~~~~~~~i~p~~~~~G~l~it~~~iyF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~~Rry-ll~~~alEif 81 (414)
T 1t77_A 3 VSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRY-LLQNTALEIF 81 (414)
T ss_dssp CSEEEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEEEEEEEEE-TTEEEEEEEE
T ss_pred EEEEEEEEEEEEECCEEEEEEEECCEEEEEECCCCCCCCCCCCCHHCCCCCCCEEECCHHEEEEEEEEC-CCCCEEEEEE
T ss_conf 899987799854051636999968889998578763312355002102567531760135032442300-3766369999
Q ss_pred ECCEEEEEECCCCHHH
Q ss_conf 6690899801678789
Q 006549 147 AAGKKYFFASFLSRDE 162 (641)
Q Consensus 147 t~~~k~~F~SF~~RD~ 162 (641)
+.+.+-+|-.|.+.+.
T Consensus 82 ~~~g~s~~l~F~~~~~ 97 (414)
T 1t77_A 82 MANRVAVMFNFPDPAT 97 (414)
T ss_dssp ETTSCEEEEECSSHHH
T ss_pred ECCCCEEEEECCCHHH
T ss_conf 7489479998088899
No 2
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=1.00 E-value=1 Score=29.95 Aligned_cols=98 Identities=11% Similarity=-0.006 Sum_probs=62.3
Q ss_pred HHCCCCCCCEEEEEEEEE-EEE--CCEECEEEEEECCEEEEEECCCCCEEEEEEECCCCCCCCCCCC---CCCCCCEEEE
Q ss_conf 007988999254689978-964--5201149997155478984467850389972244221112454---5536876999
Q 006549 72 QLFRLPSEEVLVQDFNCA-FQE--SILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKT---AGIFPNAIEI 145 (641)
Q Consensus 72 ~lF~LP~~E~Li~~f~Ca-L~r--~i~l~GrLYIS~n~iCF~S~ifg~~tk~vIp~~dI~~I~K~k~---a~i~pnaI~I 145 (641)
.-|.|-++|.++..-.-. +.. ...+.|.||||..+|.|.+.--.....+-||+.-|..|+|..+ .+..+..|.|
T Consensus 77 ~~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~~~~~~~~IPL~~I~~Iekv~g~s~~g~~~~~l~I 156 (657)
T 1lw3_A 77 EEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLET 156 (657)
T ss_dssp CCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEE
T ss_pred CCCCCCCCEEEEEEECCEEEECCCCCCEEEEEEEECCEEEEEECCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCEEEE
T ss_conf 98860788458997278799468888566899997788999706898626998401003899963787666887741899
Q ss_pred EECCEE-EEEECCC----CHHHHHHHHHHH
Q ss_conf 966908-9980167----878999999999
Q 006549 146 FAAGKK-YFFASFL----SRDEAFKLITDG 170 (641)
Q Consensus 146 ~t~~~k-~~F~SF~----~RD~a~~~I~~~ 170 (641)
..++.+ +.| .|. ++...|..|.++
T Consensus 157 ~CKDfR~~~f-~f~~~~~~~~~v~~~L~~~ 185 (657)
T 1lw3_A 157 VCKDIRNLRF-AHKPEGRTRRSIFENLMKY 185 (657)
T ss_dssp EETTTEEEEE-ECCGGGCCHHHHHHHHHHH
T ss_pred EECCCCEEEE-EECCCCCHHHHHHHHHHHH
T ss_conf 9048818999-9578642689999999998
No 3
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=1.00 E-value=1 Score=28.99 Aligned_cols=95 Identities=13% Similarity=0.019 Sum_probs=60.1
Q ss_pred CCCCCCCEEEEEEEEE-EEE--CCEECEEEEEECCEEEEEECCCCCEEEEEEECCCCCCCCCCCCC---CCCCCEEEEEE
Q ss_conf 7988999254689978-964--52011499971554789844678503899722442211124545---53687699996
Q 006549 74 FRLPSEEVLVQDFNCA-FQE--SILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTA---GIFPNAIEIFA 147 (641)
Q Consensus 74 F~LP~~E~Li~~f~Ca-L~r--~i~l~GrLYIS~n~iCF~S~ifg~~tk~vIp~~dI~~I~K~k~a---~i~pnaI~I~t 147 (641)
|.|-++|.++..-.-. +.. .-...|.||||..+|.|.+.--.....+-||+.-|..|+|..+. +..+..|.|..
T Consensus 7 ~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~~~~~~~~iPL~~I~~vek~~~~s~~~~~~~~l~I~C 86 (528)
T 1zsq_A 7 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVC 86 (528)
T ss_dssp CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEE
T ss_pred CCCCCCCEEEEECCCEEEECCCCCCEEEEEEEECCEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEC
T ss_conf 96489972788638779957888854389999888999970689863799950010589997478776788775289991
Q ss_pred CCEE-EEEECCCC----HHHHHHHHHH
Q ss_conf 6908-99801678----7899999999
Q 006549 148 AGKK-YFFASFLS----RDEAFKLITD 169 (641)
Q Consensus 148 ~~~k-~~F~SF~~----RD~a~~~I~~ 169 (641)
++.+ +.| .|.. +...|..|.+
T Consensus 87 KDfr~~~f-~f~~~~~~~~~v~~~L~~ 112 (528)
T 1zsq_A 87 KDIRNLRF-AHKPEGRTRRSIFENLMK 112 (528)
T ss_dssp TTTEEEEE-ECCGGGCCHHHHHHHHHH
T ss_pred CCCEEEEE-EECCCHHHHHHHHHHHHH
T ss_conf 58818999-956850789999999999
No 4
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=1.00 E-value=1 Score=28.26 Aligned_cols=96 Identities=7% Similarity=-0.017 Sum_probs=61.2
Q ss_pred CCCCEEEEEEEEEEEE-----CCEECEEEEEECCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEE--E--
Q ss_conf 8999254689978964-----520114999715547898446785038997224422111245455368769999--6--
Q 006549 77 PSEEVLVQDFNCAFQE-----SILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIF--A-- 147 (641)
Q Consensus 77 P~~E~Li~~f~CaL~r-----~i~l~GrLYIS~n~iCF~S~ifg~~tk~vIp~~dI~~I~K~k~a~i~pnaI~I~--t-- 147 (641)
|.+-.|...=...|.- .-.-.|++|+|...|||-..--.....+.+|+.+|.+++...+. +..+ +.|. .
T Consensus 27 ~~E~il~~~d~V~Ly~g~~k~~~~k~G~lyLTshRIIyv~~~~~~~~SfslPL~~v~~~e~~~~~-fg~s-~Ki~l~~~p 104 (145)
T 2cay_A 27 EGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGF-LTRS-PRLILFFKD 104 (145)
T ss_dssp TTCCEEEEEEEEEEEETTEECTTCSSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECSS-SSSS-CEEEEEESS
T ss_pred CCCEEEEECCCCCEECCCCCCCCCCCCEEEEECCEEEEECCCCCCCEEEEEEHHHEEEEEEECCC-CCCC-CEEEEEECC
T ss_conf 99779998598013659977767776389987686998359997645999675860351677674-4568-518998567
Q ss_pred --CC---EEEEEECCCCHHHHHHHHHHHHHHCC
Q ss_conf --69---08998016787899999999998418
Q 006549 148 --AG---KKYFFASFLSRDEAFKLITDGWLQHG 175 (641)
Q Consensus 148 --~~---~k~~F~SF~~RD~a~~~I~~~w~~~~ 175 (641)
.+ .|..|.+=.. ++.+..+.+.+++..
T Consensus 105 ~~~~~~~~KLsFk~GGa-~eF~~~l~~al~~~~ 136 (145)
T 2cay_A 105 PSSSTEFVQLSFRKSDG-VLFSQATERALENIL 136 (145)
T ss_dssp CSSTTCCEEEEESSSCC-HHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCC-HHHHHHHHHHHHHHH
T ss_conf 88886089999847990-699999999999998
No 5
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=1.00 E-value=1 Score=28.15 Aligned_cols=73 Identities=12% Similarity=0.151 Sum_probs=48.5
Q ss_pred CCEECEEEEEECCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCE-EEEEECCCCHHHHHHHHHHH
Q ss_conf 5201149997155478984467850389972244221112454553687699996690-89980167878999999999
Q 006549 93 SILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNAIEIFAAGK-KYFFASFLSRDEAFKLITDG 170 (641)
Q Consensus 93 ~i~l~GrLYIS~n~iCF~S~ifg~~tk~vIp~~dI~~I~K~k~a~i~pnaI~I~t~~~-k~~F~SF~~RD~a~~~I~~~ 170 (641)
.....|.||||..+|.|.+.. ....-||+.-|..|+|.+... ....|.|..++. .+.| .|..-+++-++...+
T Consensus 22 ~~~~~GtL~lTn~~LiF~~~~---~~e~wi~~~~I~~VeK~~~~~-~~~~l~I~CKDfr~~~f-~f~~~~~~~~v~~sL 95 (512)
T 2yf0_A 22 NKSLTGTLYLTATHLLFIDSH---QKETWILHHHIASVEKLALTT-SGCPLVIQCKNFRTVHF-IVPRERDCHDIYNSL 95 (512)
T ss_dssp --CCEEEEEECSSEEEEEESS---SCEEEEEGGGEEEEEECCCBT-TBEEEEEEETTSCEEEE-EESCHHHHHHHHHHH
T ss_pred CCCEEEEEEEECCEEEEECCC---CCCEEECCCCEEEEEEECCCC-CCCEEEEEECCCCEEEE-EECCHHHHHHHHHHH
T ss_conf 885148999977899996799---984076455556899816888-87649999158818999-948807999999999
No 6
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=1.00 E-value=1 Score=28.04 Aligned_cols=98 Identities=18% Similarity=0.192 Sum_probs=64.4
Q ss_pred CCCCCEEE-EEEEEEEEE----CCEECEEEEEECCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCE-EEEEEC-
Q ss_conf 88999254-689978964----52011499971554789844678503899722442211124545536876-999966-
Q 006549 76 LPSEEVLV-QDFNCAFQE----SILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKTAGIFPNA-IEIFAA- 148 (641)
Q Consensus 76 LP~~E~Li-~~f~CaL~r----~i~l~GrLYIS~n~iCF~S~ifg~~tk~vIp~~dI~~I~K~k~a~i~pna-I~I~t~- 148 (641)
|..+|.++ ..-.+.|.- .-...|++|+|.+.|||...-- ....+.|||.+|..++...+. +..++ |.+...
T Consensus 13 L~~~E~il~~~~~V~Ly~g~~k~~~k~G~l~LTshRli~~d~~~-~~~s~~lpl~~v~~~e~~~~~-f~~s~Ki~l~l~~ 90 (140)
T 2hth_B 13 LEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKN-HECCMAILLSQIVFIEEQAAG-IGKSAKIVVHLHP 90 (140)
T ss_dssp CCTTCCEEEEEEEEEEEETTCSSCCCCEEEEEESSEEEEEETTC-CSCCEEEEGGGEEEEEEECCT-TSSCCEEEEEECC
T ss_pred CCCCCEEEEECCCEEEECCCCCCCCCCCEEEEECCEEEEECCCC-CCEEEEEEHHHEEEEEEECCC-CCCCCEEEEEECC
T ss_conf 48995699973887885499887773888998637799955998-754899785880231121562-2458608998368
Q ss_pred -------------CEEEEEECCC--CHHHHHHHHHHHHHHCC
Q ss_conf -------------9089980167--87899999999998418
Q 006549 149 -------------GKKYFFASFL--SRDEAFKLITDGWLQHG 175 (641)
Q Consensus 149 -------------~~k~~F~SF~--~RD~a~~~I~~~w~~~~ 175 (641)
+..++=.||. -.++.+..|.+.+++..
T Consensus 91 ~~~~~~~gp~~~s~~~~~kLsFr~Gg~~eF~~~L~~al~~k~ 132 (140)
T 2hth_B 91 APPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSEEMTQRR 132 (140)
T ss_dssp CCCCSSSCCCSTTSCCEEEEEETTSCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 876678887666667689999828997699999999999722
No 7
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=26.61 Aligned_cols=149 Identities=9% Similarity=-0.041 Sum_probs=75.1
Q ss_pred EEEEEEECCHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEECCCCCCCC-CCEEEEEEEEEEEEECCCCCEEE-EEEEEEE
Q ss_conf 456699249988986652599446899999990994115536502699-96017899997631036875000-1399999
Q 006549 284 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYE-FGYSRDLSFQHPIKVYFGAKFGS-CKETQKF 361 (641)
Q Consensus 284 i~e~~fpisv~~lF~lLFsD~s~~F~~~f~~~~g~~di~~tpW~~~~~-~~~~R~isY~~pi~~piGpK~t~-c~e~Qki 361 (641)
-.+.+++++++++|++|+.|-. . +..+|-.+.....-+. +..+. +.|......+.+|-..+ .......
T Consensus 58 k~~~~v~~~~~~v~~~l~~d~~--~-------r~~Wd~~~~~~~vle~~~~~t~-I~y~~~~~~~~~~v~~RDfv~~r~~ 127 (221)
T 3p0l_A 58 RLEVVVDQPMERLYEELVERME--A-------MGEWNPNVKEIKVLQKIGKDTF-ITHELAAEAAGNLVGPRDFVSVRCA 127 (221)
T ss_dssp EEEEEESSCHHHHHHHHTTTGG--G-------TTTSCTTCSEEEEEEECSSSEE-EEEEEECC---CCSCCEEEEEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHCCC--H-------HHHCCCCHHEEEEEEECCCCEE-EEEEEECCCCCCCCCCCEEEEEEEE
T ss_conf 9999991999999999985650--0-------4332723123899994399769-9999505556774488469999999
Q ss_pred EEECCCEEEEEEEEEECCCCC-CCCEEEE---EEEEEEECCCCCCCCEEEEEEEEEEEEECCCCCCHHCCCHHHHHHHHH
Q ss_conf 976198499999586289999-9804899---999999538999983099999998990103410010011488899999
Q 006549 362 RVYRNSHLVIETSQEVHDVPY-GDYFRVE---GLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVY 437 (641)
Q Consensus 362 ~~~~~~~~VIetst~t~DVPY-GD~F~Ve---~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~e~ke~~ 437 (641)
+..++.++++..+...+++|- .++-+++ ..|.|++.+.++ ++|++.....+...+. +=+..+.+.....+-+.+
T Consensus 128 ~~~~~~~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~-~~t~vt~~~~~Dp~G~-iP~~lvn~~~~~~~~~~~ 205 (221)
T 3p0l_A 128 KRRGSTCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAGSP-SKTKLTWLLSIDLKGW-LPKSIINQVLSQTQVDFA 205 (221)
T ss_dssp EECSSCEEECCEECCCTTSCCCTTSEECEECSCEEEEEEETTEE-EEEEEEEEECEECCSS-CCHHHHHHHHHHHHHHHH
T ss_pred EECCCEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEECCCCC-CCEEEEEEEEECCCCC-CCHHHHHHHHHHHHHHHH
T ss_conf 97199399999713488899999848876065089999779999-8179999999669998-778999988789999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q 006549 438 AMWIGMA 444 (641)
Q Consensus 438 ~~wv~~a 444 (641)
+.+-+.+
T Consensus 206 ~~Lr~~~ 212 (221)
T 3p0l_A 206 NHLRKRL 212 (221)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
T ss_conf 9999998
No 8
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=1.00 E-value=1 Score=24.23 Aligned_cols=152 Identities=13% Similarity=0.017 Sum_probs=78.3
Q ss_pred EEEEEEECCHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEECCCCCCCC-CCEEEEEEEEEEEEECCCCCEEE-EEEEEEE
Q ss_conf 456699249988986652599446899999990994115536502699-96017899997631036875000-1399999
Q 006549 284 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYE-FGYSRDLSFQHPIKVYFGAKFGS-CKETQKF 361 (641)
Q Consensus 284 i~e~~fpisv~~lF~lLFsD~s~~F~~~f~~~~g~~di~~tpW~~~~~-~~~~R~isY~~pi~~piGpK~t~-c~e~Qki 361 (641)
-+..+++++++++|+.+|.|.. . +..+|-.+.....-+. +..+. +.|......+.+|-..+ .......
T Consensus 69 k~~~~v~~~~~~v~~~~~~d~~--~-------r~~Wd~~~~~~~vle~~~~~t~-I~~~~~~p~~~~~~~~RDfv~~r~~ 138 (229)
T 1em2_A 69 ILKTFLPCPAELVYQEVILQPE--R-------MVLWNKTVTACQILQRVEDNTL-ISYDVSAGAAGGVVSPRDFVNVRRI 138 (229)
T ss_dssp EEEEEESSCHHHHHHHTTTCHH--H-------HTTTCTTEEEEEEEEEETTTEE-EEEEEECCBTTTTBCCEEEEEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHCCC--C-------HHHCCCCCCEEEEEEECCCCEE-EEEEEECCCCCCCCCCCEEEEEEEE
T ss_conf 9999853889999999884862--0-------1101656612799896289859-9999866767887689706999999
Q ss_pred EEECCCEEEEEEEEEECCCCCC-CCEEEE---EEEEEEECCCCCCCCEEEEEEEEEEEEECCCCCCHHCCCHHHHHHHHH
Q ss_conf 9761984999995862899999-804899---999999538999983099999998990103410010011488899999
Q 006549 362 RVYRNSHLVIETSQEVHDVPYG-DYFRVE---GLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVY 437 (641)
Q Consensus 362 ~~~~~~~~VIetst~t~DVPYG-D~F~Ve---~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~e~ke~~ 437 (641)
+..++.++++..+...+++|-. ++-+++ ..|+|.+.+.+ +++|++.....+...+ .+=+.++.+.+...+-..+
T Consensus 139 ~~~~~~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~-~~~t~vt~~~~~Dp~G-~iP~~l~n~~~~~~~~~~~ 216 (229)
T 1em2_A 139 ERRRDRYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASN-PRVCTFVWILNTDLKG-RLPRYLIHQSLAATMFEFA 216 (229)
T ss_dssp EECSSEEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSC-TTCEEEEEEECEECCS-SSCHHHHHHHHHHHHHHHH
T ss_pred EECCCEEEEEEECCCCCCCCCCCCCEEEEECCCEEEEEECCCC-CCCEEEEEEEEECCCC-CCCHHHHHHHHHHHHHHHH
T ss_conf 9749979999732358888999998866602318999955999-9968999999977899-8789999988778899999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q 006549 438 AMWIGMAHDV 447 (641)
Q Consensus 438 ~~wv~~a~e~ 447 (641)
..+-++++++
T Consensus 217 ~~Lr~~~~~~ 226 (229)
T 1em2_A 217 FHLRQRISEL 226 (229)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
T ss_conf 9999999985
No 9
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=1.00 E-value=1 Score=23.87 Aligned_cols=59 Identities=10% Similarity=0.112 Sum_probs=40.4
Q ss_pred CCCCEEEEEEEEEEE-E--C--CEECEEEEEECCEEEEEECCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 899925468997896-4--5--201149997155478984467850389972244221112454
Q 006549 77 PSEEVLVQDFNCAFQ-E--S--ILLQGHMYLFVHFICFYSNIFGFETKKIIPFYEVTAVRRAKT 135 (641)
Q Consensus 77 P~~E~Li~~f~CaL~-r--~--i~l~GrLYIS~n~iCF~S~ifg~~tk~vIp~~dI~~I~K~k~ 135 (641)
|.+..+...-...|+ . + -.-.|++|+|.+.|||.-........+.|++++|..++...+
T Consensus 19 ~~E~~l~vqd~VgLY~Gk~Ki~~~q~G~~yLTShRiiyvD~~~p~~~s~~l~L~~I~~~e~~ag 82 (566)
T 1w7p_D 19 EGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSG 82 (566)
T ss_dssp ----------------------------------------------------------------
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCEEEEEEHHHCCEEEEEEC
T ss_conf 8843898615613536876786665766999712489963888752079878577120001304
No 10
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=1.00 E-value=1 Score=23.59 Aligned_cols=145 Identities=10% Similarity=0.087 Sum_probs=73.1
Q ss_pred EEEEEEECCHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEEEEEEEEEEEC--CCCCEEEEEEEEEE
Q ss_conf 4566992499889866525994468999999909941155365026999601789999763103--68750001399999
Q 006549 284 VAETNFQMKVEDFYSLFFSDDTVNFIESFHRKCGDKEFKCTSWHRHYEFGYSRDLSFQHPIKVY--FGAKFGSCKETQKF 361 (641)
Q Consensus 284 i~e~~fpisv~~lF~lLFsD~s~~F~~~f~~~~g~~di~~tpW~~~~~~~~~R~isY~~pi~~p--iGpK~t~c~e~Qki 361 (641)
-+..+++++++++|++++..... ..+ +.++.....-..-+ ..+..+.|..+...+ +.|+ ........
T Consensus 70 k~~~~v~~~~~~v~~~l~d~~~r---~~W-----d~~~~~~~vle~id-~~~~I~y~~~~~~~~~~v~~R--Dfv~~r~~ 138 (224)
T 1jss_A 70 KAQGVMDDVVNNVIDHIRPGPWR---LDW-----DRLMTSLDVLEHFE-ENCCVMRYTTAGQLLNIISPR--EFVDFSYT 138 (224)
T ss_dssp EEEEEESSCHHHHHHHHSSSTTH---HHH-----CSSEEEEEEEEECS-TTEEEEEEEECCBTTTTBCCE--EEEEEEEE
T ss_pred EEEEEEECCHHHHHHHHHCCCCC---CCC-----CCCEEEEEEEEECC-CCEEEEEEECCCCCCCCCCCC--EEEEEEEE
T ss_conf 99999918999999998674541---341-----52002689999848-985999998156567878998--48999999
Q ss_pred EEECCCEEEEEEEEEECCCCCCCCEEEE---EEEEEEECCCCCCCCEEEEEEEEEEEEECCCCCCHHCCCHHHHHHHHHH
Q ss_conf 9761984999995862899999804899---9999995389999830999999989901034100100114888999999
Q 006549 362 RVYRNSHLVIETSQEVHDVPYGDYFRVE---GLWDVMRDDGGSKEGCILRVYVNVAFSKKTVWKGKIVQSTLEECRDVYA 438 (641)
Q Consensus 362 ~~~~~~~~VIetst~t~DVPYGD~F~Ve---~R~~It~~~~~sk~~C~L~V~~~V~F~KsT~~K~~IEkst~~e~ke~~~ 438 (641)
+..++..+++..+...++.| -++-+++ ..|.|++.+.++ ++|++...+.+...+ .+=+.++.+.....+.+.+.
T Consensus 139 ~~~~~~~vi~~~Sv~hp~~~-~g~VR~~~~~~g~~i~p~~~~~-~~t~vt~~~~~Dp~G-~iP~~lvn~~~~~~~~~~~~ 215 (224)
T 1jss_A 139 VGYEEGLLSCGVSVEWSETR-PEFVRGYNHPCGWFCVPLKDSP-SQSLLTGYIQTDLRG-MIPQSAVDTAMASTLANFYS 215 (224)
T ss_dssp EEETTEEEEEEEECCCCCCC-TTSEECEECSEEEEEEEETTEE-EEEEEEEEECEECCS-CCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCEEEEEEEEEECCCCC-CCCEEEEECCCEEEEEECCCCC-CCEEEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHH
T ss_conf 98699099999635569899-9978997025589999758999-955999999867898-76199999987775999999
Q ss_pred HHHH
Q ss_conf 9999
Q 006549 439 MWIG 442 (641)
Q Consensus 439 ~wv~ 442 (641)
.+-+
T Consensus 216 ~Lr~ 219 (224)
T 1jss_A 216 DLRK 219 (224)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
Done!