Query 006551
Match_columns 641
No_of_seqs 155 out of 186
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 00:56:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006551.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006551hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3691 Exocyst complex subuni 100.0 8E-47 1.7E-51 423.4 29.3 462 16-616 26-525 (982)
2 PF04048 Sec8_exocyst: Sec8 ex 100.0 5.3E-32 1.1E-36 255.4 16.5 137 15-151 1-142 (142)
3 PF10475 DUF2450: Protein of u 99.7 8.3E-16 1.8E-20 160.7 22.1 186 20-207 1-191 (291)
4 KOG2115 Vacuolar sorting prote 99.3 4.3E-10 9.2E-15 129.6 22.7 203 6-208 181-402 (951)
5 PF06248 Zw10: Centromere/kine 98.2 7.9E-05 1.7E-09 85.6 19.8 172 42-213 7-183 (593)
6 PF15469 Sec5: Exocyst complex 98.1 0.0001 2.2E-09 72.2 16.3 142 63-205 2-149 (182)
7 PF04100 Vps53_N: Vps53-like, 98.0 0.00043 9.4E-09 75.9 20.0 179 30-209 2-185 (383)
8 PF04124 Dor1: Dor1-like famil 97.8 0.0012 2.6E-08 71.0 19.4 159 47-207 12-170 (338)
9 KOG2176 Exocyst complex, subun 97.4 0.0079 1.7E-07 70.4 19.2 173 36-209 35-207 (800)
10 PF06148 COG2: COG (conserved 97.2 0.0004 8.7E-09 65.1 4.3 124 28-151 9-132 (133)
11 PF10392 COG5: Golgi transport 97.1 0.014 3E-07 55.0 14.2 90 26-115 2-99 (132)
12 KOG2180 Late Golgi protein sor 96.8 0.087 1.9E-06 61.4 19.2 194 18-211 5-203 (793)
13 KOG2069 Golgi transport comple 96.4 0.14 3E-06 58.6 17.4 177 27-207 16-194 (581)
14 KOG2346 Uncharacterized conser 95.9 0.058 1.3E-06 60.6 11.0 185 27-217 28-215 (636)
15 PF08700 Vps51: Vps51/Vps67; 94.9 0.34 7.3E-06 41.7 10.4 76 29-104 3-81 (87)
16 PF10191 COG7: Golgi complex c 94.0 8.1 0.00018 46.6 22.6 185 26-212 4-199 (766)
17 KOG2307 Low density lipoprotei 92.3 17 0.00037 42.3 20.3 136 3-144 10-152 (705)
18 KOG0412 Golgi transport comple 90.5 11 0.00024 44.6 17.1 161 46-209 35-205 (773)
19 PF09763 Sec3_C: Exocyst compl 90.0 9.5 0.00021 45.3 16.7 147 62-208 11-179 (701)
20 KOG1961 Vacuolar sorting prote 87.8 59 0.0013 38.3 20.0 186 11-208 17-215 (683)
21 PRK11637 AmiB activator; Provi 82.0 53 0.0011 36.7 16.4 147 46-198 44-191 (428)
22 PF02601 Exonuc_VII_L: Exonucl 80.4 54 0.0012 35.0 15.1 73 50-122 148-226 (319)
23 PF04129 Vps52: Vps52 / Sac2 f 78.1 75 0.0016 36.6 16.3 127 83-209 16-154 (508)
24 PRK10869 recombination and rep 74.6 1.6E+02 0.0035 34.3 17.9 25 182-206 357-385 (553)
25 PF07899 Frigida: Frigida-like 74.3 9.6 0.00021 40.9 7.3 81 113-199 146-226 (290)
26 TIGR00996 Mtu_fam_mce virulenc 72.7 93 0.002 32.6 14.2 106 12-121 128-235 (291)
27 KOG2033 Low density lipoprotei 70.1 47 0.001 39.7 11.9 104 63-169 38-141 (863)
28 PF12854 PPR_1: PPR repeat 69.5 8.8 0.00019 27.7 4.0 28 313-341 5-32 (34)
29 KOG0994 Extracellular matrix g 69.4 3.3E+02 0.0072 34.9 21.3 65 65-129 1568-1632(1758)
30 PTZ00464 SNF-7-like protein; P 68.9 1.1E+02 0.0024 31.5 13.3 74 129-209 75-148 (211)
31 KOG2273 Membrane coat complex 68.5 1.8E+02 0.0039 33.2 16.3 49 48-97 280-328 (503)
32 TIGR03185 DNA_S_dndD DNA sulfu 67.7 82 0.0018 37.3 13.7 31 182-212 492-522 (650)
33 PF08317 Spc7: Spc7 kinetochor 65.7 1.5E+02 0.0033 32.0 14.3 80 113-194 206-290 (325)
34 PF10186 Atg14: UV radiation r 65.7 1.5E+02 0.0032 30.7 13.8 83 48-133 26-108 (302)
35 cd07600 BAR_Gvp36 The Bin/Amph 61.6 1.7E+02 0.0037 30.7 13.2 142 61-208 79-242 (242)
36 PLN03094 Substrate binding sub 61.3 2.2E+02 0.0048 31.9 14.6 33 138-170 336-368 (370)
37 PF10136 SpecificRecomb: Site- 60.9 88 0.0019 37.4 12.1 50 58-107 186-236 (643)
38 cd07615 BAR_Endophilin_A3 The 60.9 2.1E+02 0.0047 29.7 17.9 109 44-152 83-199 (223)
39 cd07616 BAR_Endophilin_B1 The 60.2 2E+02 0.0043 30.2 13.2 140 62-206 71-227 (229)
40 KOG2211 Predicted Golgi transp 59.8 3.9E+02 0.0084 32.4 17.3 139 47-190 73-218 (797)
41 cd07592 BAR_Endophilin_A The B 59.1 1.2E+02 0.0026 31.5 11.4 139 62-208 66-220 (223)
42 PF06160 EzrA: Septation ring 58.6 3E+02 0.0066 32.2 15.9 80 83-172 124-204 (560)
43 cd07614 BAR_Endophilin_A2 The 57.4 2.5E+02 0.0053 29.3 20.5 147 16-167 46-212 (223)
44 PF04156 IncA: IncA protein; 56.4 2.1E+02 0.0044 28.1 12.9 7 115-121 164-170 (191)
45 KOG2347 Sec5 subunit of exocys 56.0 1.1E+02 0.0024 37.6 11.7 170 27-202 166-350 (934)
46 TIGR00634 recN DNA repair prot 55.8 3.9E+02 0.0084 31.1 18.5 37 90-126 275-311 (563)
47 cd07665 BAR_SNX1 The Bin/Amphi 53.6 2.9E+02 0.0062 29.0 14.6 122 46-173 77-198 (234)
48 cd07664 BAR_SNX2 The Bin/Amphi 53.0 2.6E+02 0.0057 29.2 12.8 157 25-206 21-195 (234)
49 PF06008 Laminin_I: Laminin Do 52.6 2.9E+02 0.0064 28.8 18.4 141 48-198 51-196 (264)
50 cd07613 BAR_Endophilin_A1 The 52.3 3E+02 0.0064 28.8 17.4 124 45-170 84-215 (223)
51 PHA02562 46 endonuclease subun 52.3 2E+02 0.0044 32.7 13.1 16 181-196 303-318 (562)
52 PF09325 Vps5: Vps5 C terminal 52.1 2.6E+02 0.0056 28.0 15.6 44 52-96 34-77 (236)
53 PF05266 DUF724: Protein of un 52.1 1.5E+02 0.0033 30.0 10.6 24 1-24 18-41 (190)
54 KOG2148 Exocyst protein Sec3 [ 50.1 1.6E+02 0.0034 35.4 11.5 153 59-212 196-366 (867)
55 KOG2718 Na+-bile acid cotransp 49.7 11 0.00023 41.9 2.2 38 595-632 154-191 (371)
56 KOG2176 Exocyst complex, subun 48.3 2.8E+02 0.0062 33.9 13.5 125 58-213 46-174 (800)
57 PRK00286 xseA exodeoxyribonucl 48.3 2.4E+02 0.0051 31.7 12.6 60 48-107 263-324 (438)
58 PF11887 DUF3407: Protein of u 46.3 3.4E+02 0.0074 28.7 12.7 89 69-173 47-137 (267)
59 KOG2196 Nuclear porin [Nuclear 44.8 1.9E+02 0.0041 30.7 10.1 78 62-153 73-151 (254)
60 PRK09841 cryptic autophosphory 44.8 3.4E+02 0.0074 32.7 13.9 39 86-124 309-347 (726)
61 cd07623 BAR_SNX1_2 The Bin/Amp 44.7 3.6E+02 0.0079 27.6 16.2 152 49-206 19-185 (224)
62 KOG3501 Molecular chaperone Pr 43.8 2.1E+02 0.0045 26.7 9.0 78 82-159 4-94 (114)
63 PRK14140 heat shock protein Gr 43.2 1.1E+02 0.0023 31.2 8.0 16 128-143 90-105 (191)
64 cd07617 BAR_Endophilin_B2 The 41.9 4.3E+02 0.0093 27.6 17.1 76 46-121 90-166 (220)
65 PRK09039 hypothetical protein; 41.7 5.1E+02 0.011 28.5 14.8 46 67-112 116-161 (343)
66 COG4477 EzrA Negative regulato 41.7 6.6E+02 0.014 29.7 16.5 81 75-172 126-207 (570)
67 PF04048 Sec8_exocyst: Sec8 ex 41.2 2.7E+02 0.0058 26.6 10.1 84 46-132 23-113 (142)
68 KOG3745 Exocyst subunit - Sec1 41.2 4.1E+02 0.0089 32.5 13.3 141 52-207 77-219 (763)
69 KOG0612 Rho-associated, coiled 41.2 5E+02 0.011 33.4 14.4 68 84-153 528-595 (1317)
70 cd07665 BAR_SNX1 The Bin/Amphi 41.2 2.6E+02 0.0057 29.3 10.7 75 46-126 26-100 (234)
71 cd07610 FCH_F-BAR The Extended 40.8 3.4E+02 0.0074 26.2 14.6 35 152-186 123-157 (191)
72 PF06160 EzrA: Septation ring 40.6 6.6E+02 0.014 29.4 17.5 125 52-183 347-471 (560)
73 PF12128 DUF3584: Protein of u 39.1 6.3E+02 0.014 32.5 15.6 69 50-118 772-853 (1201)
74 COG1463 Ttg2C ABC-type transpo 38.9 5.6E+02 0.012 28.1 15.9 61 63-123 165-225 (359)
75 PRK10929 putative mechanosensi 38.9 9.7E+02 0.021 30.8 16.8 120 84-213 105-236 (1109)
76 PRK10884 SH3 domain-containing 38.6 4E+02 0.0087 27.4 11.4 61 46-113 90-150 (206)
77 PF06419 COG6: Conserved oligo 38.6 7.4E+02 0.016 29.4 18.6 148 60-207 24-182 (618)
78 KOG0963 Transcription factor/C 38.1 7.8E+02 0.017 29.5 17.9 122 69-204 230-353 (629)
79 KOG2216 Conserved coiled/coile 37.6 4.6E+02 0.01 28.5 11.8 137 53-197 15-171 (303)
80 TIGR03185 DNA_S_dndD DNA sulfu 37.5 7.7E+02 0.017 29.3 17.9 27 181-207 484-510 (650)
81 PRK11281 hypothetical protein; 37.5 5.2E+02 0.011 33.1 14.2 59 155-213 194-255 (1113)
82 cd07624 BAR_SNX7_30 The Bin/Am 37.2 4.4E+02 0.0096 26.4 16.3 72 46-117 67-138 (200)
83 PRK04778 septation ring format 36.6 7.6E+02 0.016 28.9 16.0 107 74-183 369-475 (569)
84 KOG2460 Signal recognition par 36.5 7.9E+02 0.017 29.1 15.6 120 48-173 300-454 (593)
85 PRK11519 tyrosine kinase; Prov 36.1 7.9E+02 0.017 29.6 15.1 36 86-121 309-344 (719)
86 COG5491 VPS24 Conserved protei 35.5 5.2E+02 0.011 26.7 13.9 79 74-152 24-105 (204)
87 PF08393 DHC_N2: Dynein heavy 35.4 1.9E+02 0.0042 31.6 9.2 180 14-208 142-326 (408)
88 TIGR00237 xseA exodeoxyribonuc 35.2 6E+02 0.013 28.7 13.2 60 48-107 258-319 (432)
89 PF13514 AAA_27: AAA domain 34.6 3.1E+02 0.0067 34.7 11.8 151 5-157 68-236 (1111)
90 PF08317 Spc7: Spc7 kinetochor 34.6 6.2E+02 0.014 27.4 13.9 135 46-181 160-298 (325)
91 PF15619 Lebercilin: Ciliary p 34.4 5.1E+02 0.011 26.3 12.0 95 51-145 14-118 (194)
92 PF09602 PhaP_Bmeg: Polyhydrox 34.3 4.9E+02 0.011 26.1 12.7 16 13-28 3-18 (165)
93 PF08385 DHC_N1: Dynein heavy 34.2 7.2E+02 0.016 28.3 13.9 196 4-206 254-453 (579)
94 PF12729 4HB_MCP_1: Four helix 34.1 3.6E+02 0.0079 24.5 12.8 71 99-169 79-149 (181)
95 COG3352 FlaC Putative archaeal 33.7 4.9E+02 0.011 25.9 10.6 50 64-113 90-140 (157)
96 PF09325 Vps5: Vps5 C terminal 33.7 5E+02 0.011 26.0 16.2 96 46-141 79-175 (236)
97 PF03357 Snf7: Snf7; InterPro 33.0 3E+02 0.0066 26.0 9.1 64 130-195 56-119 (171)
98 PF13949 ALIX_LYPXL_bnd: ALIX 32.9 5.9E+02 0.013 26.5 14.1 101 68-171 10-124 (296)
99 PF04100 Vps53_N: Vps53-like, 32.4 2.3E+02 0.0049 31.7 9.1 68 74-142 64-147 (383)
100 PF13870 DUF4201: Domain of un 32.2 4.9E+02 0.011 25.4 13.5 81 79-159 75-155 (177)
101 PF04740 LXG: LXG domain of WX 32.0 3.7E+02 0.0079 26.5 9.8 27 98-124 141-167 (204)
102 PF15290 Syntaphilin: Golgi-lo 31.9 7E+02 0.015 27.2 13.2 50 85-134 114-163 (305)
103 PRK04863 mukB cell division pr 31.5 1.4E+03 0.03 30.5 16.8 158 14-202 914-1071(1486)
104 PTZ00446 vacuolar sorting prot 31.3 5.8E+02 0.013 26.0 13.7 95 107-208 57-153 (191)
105 PHA02562 46 endonuclease subun 31.0 8.4E+02 0.018 27.8 15.0 6 5-10 102-107 (562)
106 PF04124 Dor1: Dor1-like famil 30.9 6.8E+02 0.015 27.2 12.4 80 60-142 57-136 (338)
107 cd07594 BAR_Endophilin_B The B 30.7 6.4E+02 0.014 26.3 13.1 140 63-208 72-229 (229)
108 KOG4643 Uncharacterized coiled 30.3 1.3E+03 0.027 29.6 15.3 67 75-141 468-538 (1195)
109 PF10455 BAR_2: Bin/amphiphysi 30.1 7.2E+02 0.016 27.0 12.1 76 30-117 145-222 (289)
110 PRK02224 chromosome segregatio 30.0 1.1E+03 0.024 28.8 18.4 38 182-219 724-761 (880)
111 COG5113 UFD2 Ubiquitin fusion 29.9 1E+03 0.022 28.9 13.8 136 53-195 653-837 (929)
112 cd07596 BAR_SNX The Bin/Amphip 29.8 5.3E+02 0.011 25.0 16.3 47 49-96 11-57 (218)
113 PRK03918 chromosome segregatio 29.7 1.1E+03 0.024 28.7 16.0 8 320-327 831-838 (880)
114 TIGR00606 rad50 rad50. This fa 29.2 1.4E+03 0.03 29.7 17.9 168 4-199 379-547 (1311)
115 PRK15374 pathogenicity island 28.6 1.1E+03 0.023 28.2 15.2 48 56-104 124-171 (593)
116 PF07139 DUF1387: Protein of u 28.4 5.7E+02 0.012 28.0 10.9 24 140-163 244-267 (302)
117 PF06840 DUF1241: Protein of u 27.8 73 0.0016 31.4 3.8 41 327-367 92-134 (154)
118 PF07851 TMPIT: TMPIT-like pro 27.8 6.1E+02 0.013 28.1 11.2 32 427-458 211-242 (330)
119 KOG4182 Uncharacterized conser 27.7 1.1E+03 0.023 27.9 13.3 115 91-207 84-198 (828)
120 PRK04778 septation ring format 27.5 1E+03 0.023 27.8 16.4 35 138-172 174-208 (569)
121 TIGR03545 conserved hypothetic 27.5 2.7E+02 0.0059 32.7 9.1 12 136-147 251-262 (555)
122 KOG1029 Endocytic adaptor prot 27.4 1.3E+03 0.028 28.8 15.4 53 83-135 453-505 (1118)
123 PF07393 Sec10: Exocyst comple 26.5 7.3E+02 0.016 29.8 12.6 121 77-214 2-128 (710)
124 PF02050 FliJ: Flagellar FliJ 26.4 4.2E+02 0.0092 22.9 10.1 51 79-129 43-93 (123)
125 PF10602 RPN7: 26S proteasome 26.0 6.4E+02 0.014 24.8 12.8 104 74-185 43-157 (177)
126 KOG2307 Low density lipoprotei 25.8 2.1E+02 0.0046 33.8 7.5 61 53-113 47-107 (705)
127 KOG0796 Spliceosome subunit [R 25.8 5.4E+02 0.012 28.4 10.2 75 83-169 85-159 (319)
128 cd07596 BAR_SNX The Bin/Amphip 25.6 6.2E+02 0.014 24.5 16.5 79 47-125 62-140 (218)
129 PRK02224 chromosome segregatio 25.4 1.3E+03 0.028 28.1 16.4 10 196-205 742-751 (880)
130 PF00015 MCPsignal: Methyl-acc 25.3 6.2E+02 0.014 24.4 13.4 81 48-128 81-161 (213)
131 PF05615 THOC7: Tho complex su 25.1 5.8E+02 0.013 24.0 10.6 67 48-114 45-114 (139)
132 PTZ00320 ribosomal protein L14 24.9 46 0.001 33.6 1.9 41 548-590 14-66 (188)
133 COG4717 Uncharacterized conser 24.3 1.5E+03 0.032 28.5 15.6 92 46-146 178-270 (984)
134 cd08315 Death_TRAILR_DR4_DR5 D 24.2 1.5E+02 0.0032 26.7 4.9 87 67-157 4-96 (96)
135 PF07303 Occludin_ELL: Occludi 24.1 4.7E+02 0.01 23.9 8.1 65 69-147 10-75 (101)
136 PRK10884 SH3 domain-containing 24.1 6.7E+02 0.015 25.7 10.2 13 49-61 100-112 (206)
137 PF04108 APG17: Autophagy prot 24.0 1.1E+03 0.023 26.6 15.4 52 70-121 286-337 (412)
138 PF14276 DUF4363: Domain of un 24.0 5.6E+02 0.012 23.4 9.5 81 83-169 25-105 (121)
139 TIGR02606 antidote_CC2985 puta 24.0 70 0.0015 27.1 2.6 30 146-175 12-41 (69)
140 KOG2008 BTK-associated SH3-dom 24.0 1E+03 0.022 26.4 16.3 68 46-113 35-108 (426)
141 cd09238 V_Alix_like_1 Protein- 23.8 9.7E+02 0.021 26.1 13.7 42 71-112 237-278 (339)
142 PF03357 Snf7: Snf7; InterPro 23.8 5.1E+02 0.011 24.4 8.9 104 48-152 14-127 (171)
143 PF06840 DUF1241: Protein of u 23.6 6.5E+02 0.014 24.9 9.5 49 111-171 84-132 (154)
144 cd07627 BAR_Vps5p The Bin/Amph 23.5 7.8E+02 0.017 24.9 17.1 151 49-206 11-179 (216)
145 cd07595 BAR_RhoGAP_Rich-like T 22.8 9E+02 0.02 25.4 17.6 66 47-112 79-145 (244)
146 PF10168 Nup88: Nuclear pore c 22.6 1.4E+03 0.03 28.0 13.8 8 320-327 702-709 (717)
147 PF05130 FlgN: FlgN protein; 22.2 5.7E+02 0.012 22.9 12.6 75 49-124 12-92 (143)
148 PF11053 DNA_Packaging: Termin 21.3 5.5E+02 0.012 25.4 8.4 56 46-101 46-113 (153)
149 PF15449 Retinal: Retinal prot 20.8 9.2E+02 0.02 30.9 11.8 116 67-200 185-317 (1287)
150 PF13779 DUF4175: Domain of un 20.8 1.7E+03 0.036 27.8 14.8 121 89-212 466-611 (820)
151 PF11802 CENP-K: Centromere-as 20.7 5E+02 0.011 28.0 8.6 129 36-167 83-248 (268)
152 PF13514 AAA_27: AAA domain 20.5 1.8E+03 0.039 28.1 16.5 14 15-28 698-711 (1111)
153 smart00787 Spc7 Spc7 kinetocho 20.3 1.1E+03 0.025 25.6 14.1 28 164-191 255-282 (312)
154 PRK10807 paraquat-inducible pr 20.2 1.1E+03 0.025 27.6 12.3 16 98-113 476-491 (547)
155 PRK11637 AmiB activator; Provi 20.1 1.2E+03 0.027 25.9 18.3 47 77-123 85-131 (428)
156 PF04799 Fzo_mitofusin: fzo-li 20.0 5.5E+02 0.012 25.9 8.3 42 62-103 111-152 (171)
No 1
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8e-47 Score=423.44 Aligned_cols=462 Identities=21% Similarity=0.253 Sum_probs=330.6
Q ss_pred HHHHHHHhHhhhCCCCCCchhHHHhhcC--CCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 006551 16 LREELARIEVSWVAPRFDSLPHVVHILT--SKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSES 93 (641)
Q Consensus 16 l~evL~~I~~eW~~~~Fd~l~~vL~lLs--s~~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseS 93 (641)
..+...+|...|. ...+ -.+||.++++|++.++..+.+|+++|++|+|+|++.|.+|++|++.|+.|
T Consensus 26 sn~~G~lInvi~n-----------L~~Se~~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~ 94 (982)
T KOG3691|consen 26 SNELGLLINVIRN-----------LVGSEDTEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNC 94 (982)
T ss_pred ccccchhhhHHHh-----------hccCCcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666776666 3333 23899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhc
Q 006551 94 AESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER 173 (641)
Q Consensus 94 qe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~ 173 (641)
|++|.+||++|.+||++|+|+|++|++||.++.+|++||++|++||+++++|++||.+|++|+|++|.++|.+++.++++
T Consensus 95 rerI~~vK~~L~~~k~ll~~~rdeLqklw~~~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~lng 174 (982)
T KOG3691|consen 95 RERIHNVKNNLEACKELLNTRRDELQKLWAENSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWELLNG 174 (982)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHhHhcCCCccc-ccccccccCCCCccchhcccccCCCCCccccccccC
Q 006551 174 EGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSS-AVLSMHEMDDEVPTTVAVAYTTNNSQPLSRRTRLKG 252 (641)
Q Consensus 174 ~eL~~I~AL~dLRs~L~~qe~~L~d~LvEELh~hLYlKs~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~q~ls~~trl~~ 252 (641)
+ |.+|..|+|||++|+.+++.|+++|+||||+|+|+|+.... .+ .+. ..|++.+ +.
T Consensus 175 ~-L~~VEgLs~l~~ele~~~~~L~~~L~eELv~ily~ks~~~~l~~--~~~-----------------~~~~~s~--l~- 231 (982)
T KOG3691|consen 175 P-LDGVEGLSDLRSELEGLLSHLEDILIEELVSILYLKSVAYPLVS--YCR-----------------TNPLSSR--LN- 231 (982)
T ss_pred c-chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHh--hhc-----------------CCchhhH--HH-
Confidence 6 99999999999999999999999999999999999975321 11 011 1122111 11
Q ss_pred CCCCCccccCCCCCCCCCCCCCCCCCccccccccccccccccc-----cCC----Cch--HHHHHhhcC-CcchhHHHHH
Q 006551 253 DNQFGVHGLADGSHSSTFDGHDEDGSLEAHDETSLDGLSIGWL-----ANS----TPD--EFVEAIRKS-DAPLHVKYLQ 320 (641)
Q Consensus 253 ~nq~~~~~~~~~s~~~~~~~~~~~~n~~~~di~~~s~~i~~fl-----sn~----~p~--~f~ed~~kn-~~~dsf~Yi~ 320 (641)
+|. ||.++.+...+++.+.+-+ .+. +.+ ...+++.-. |++.+-.+..
T Consensus 232 ----------------~~~-----~~~in~t~l~~sr~~~ea~~~k~~~g~~sv~~~~~~~~~~~l~~~~pe~~sslf~~ 290 (982)
T KOG3691|consen 232 ----------------DFL-----YNNINTTTLGTSRQLLEALCHKSDAGSGSVRDIRIVLEKEDLLLSLPEANSSLFRR 290 (982)
T ss_pred ----------------HHh-----hcccCccccCccHHHHHHHHHHhhcCCcchhhHHHHHhhccccccchhhHHHHHHH
Confidence 111 3333333333333221110 000 000 112222223 6666667778
Q ss_pred HHHHHHHhhCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhchhccccccccCccccccccCcccccccccccccCC
Q 006551 321 TMVECLCILGKVAAAGAIICQRLRPTIHEIITSKIKAHAQLINSSRSAIGQAAQTGTTGLHFMKGQLRSYQLPKQKRQNG 400 (641)
Q Consensus 321 ~LlEsLn~LgKL~~Aldil~qRl~~ELh~IV~~ti~e~~~~~~~s~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~s~~~ 400 (641)
.+++.++++.|+|.++.+|..|+.+|++++|.+++..+.. .++ +..+..+
T Consensus 291 il~k~~~~~~k~p~~~n~i~~~~~~el~niv~kSt~~i~~-----------~g~----------------~~~e~at--- 340 (982)
T KOG3691|consen 291 ILEKFTTVDSKSPAIVNKISERINVELVNIVSKSTYDISL-----------SGE----------------TDREHAT--- 340 (982)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccchhhhc-----------ccc----------------chhhhhh---
Confidence 9999999999999999999999999999999766555411 111 0000010
Q ss_pred cccccccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhhhHHHHH------HHHHhhcCCCCCCCcccccCCCCC
Q 006551 401 ISLSGTLLAVSPVSALMAPMGKAQAAAKELLDSILDSVVRIFENHVVVGE------LLESRSSRHDINTPKSMIADANWN 474 (641)
Q Consensus 401 ~~~~~t~~~~~~~~~~~~~~~~~~~il~elf~slf~k~~avle~Hrvv~e------v~~~i~~r~~~~~~~~~~~~~~~~ 474 (641)
| +..--+|.++||-||.||.++.+.|+++.+ +++...++.
T Consensus 341 -------~------------~tn~f~L~ell~~if~kf~a~aq~Ha~~~~~s~~~~vv~P~~sq~--------------- 386 (982)
T KOG3691|consen 341 -------F------------DTNHFMLLELLEEIFTKFEAAAQKHASSLHKSLQNDVVSPKVSQK--------------- 386 (982)
T ss_pred -------c------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCC---------------
Confidence 1 122239999999999999999999999988 333333332
Q ss_pred CCCCccccccccchhhhHHHHHHHHHHHHHHhhcCccch-hhhHHHHH----------HHhhcCCCCccccCCCCCCcce
Q 006551 475 PDSEASVTGGYSIGFSMTVLQSECQQLICEILRATPEAA-SADAAVQT----------ARLASKAPSKEKRDGSEDGLTF 543 (641)
Q Consensus 475 ~d~~~s~~~~~~~l~~w~~~QsE~~~Ll~~yl~~~~e~~-~~~~~~~~----------~~~~~~~~~~~~~~~s~~g~~~ 543 (641)
..|++-.+|..+|+|++-||.+||-..+--- ...-+++. ++.+. +..-++..|+ |
T Consensus 387 --------d~f~~~~~W~k~qs~ielllsE~i~~nn~~~~~~e~s~~~sp~s~~r~~~~~f~~-----e~~~~~~s~~-f 452 (982)
T KOG3691|consen 387 --------DTFDFTDFWQKAQSEIELLLSEYIDNNNNSVKGTEMSINNSPASNERKKLFDFTN-----EIAVEPNSNL-F 452 (982)
T ss_pred --------CcccHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCCcchhHHHHhhc-----cccCCCCccc-c
Confidence 2478888899999999999999996433210 01111111 12221 2223445555 6
Q ss_pred eeeecccccccCCCCccccccccccCCCcccccCcccc------cccCCCcceehhhhhhhhhhhHHHHhhcccccccc
Q 006551 544 AFRFTDATISIPNQGADLIRQGWSRRGTNVLQEGYGTA------AVLPEQGIYLAASIYRPVLQFTDKVASMLPQKYSQ 616 (641)
Q Consensus 544 ~f~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~rp~~~f~~~~~~~~~~~~~~ 616 (641)
-+||.--+++-.. . .+-+|+..-|+---|-+| .-+=-+|.|-+..||-|.+-|+.-..+.+|-+-.|
T Consensus 453 ~~~~~~~a~~k~~---~---l~~qrs~~~~~~~el~~g~s~e~~e~ic~Psvfni~vI~~pll~fie~te~~l~~~p~q 525 (982)
T KOG3691|consen 453 YHRINELANEKAP---E---LILQRSNASVSTIELFSGSSKEIVELICKPSVFNIKVILPPLLRFIEETESILKNPPIQ 525 (982)
T ss_pred hhHHHHHhhhccc---h---hhhhhhhhhhccchhccCcchhhhcccCCcccceeeehhhHHHHHHHHHHHHcCCCCCC
Confidence 7776665555332 1 223344333321111111 11556889999999999999999999988866543
No 2
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=99.98 E-value=5.3e-32 Score=255.43 Aligned_cols=137 Identities=39% Similarity=0.601 Sum_probs=132.7
Q ss_pred HHHHHHHHhHhhhCC---CCCCchhHHHhhcCCC--chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 006551 15 YLREELARIEVSWVA---PRFDSLPHVVHILTSK--DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRL 89 (641)
Q Consensus 15 ~l~evL~~I~~eW~~---~~Fd~l~~vL~lLss~--~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~ 89 (641)
.|+++|+.|+++|+. ++|+|+.+||.+|+.. ++++++.+|++.++.++++|+++|++||++||++|++|+.|+..
T Consensus 1 ~l~~~l~~I~~~W~~~~~~~~~pv~~al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~ 80 (142)
T PF04048_consen 1 ELDEVLNEIKDEWPFMLTDDFNPVELALSLLDDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSS 80 (142)
T ss_pred CHHHHHHHHHHHHHHHhcCCCcHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999997 8999999999999744 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHH
Q 006551 90 FSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKL 151 (641)
Q Consensus 90 IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~l 151 (641)
|++||++|..+|++|++||..|+|++++|++||.++++|++||++|++||+|+++|++||+|
T Consensus 81 i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~iL~~Ie~l~~vP~kie~l 142 (142)
T PF04048_consen 81 ISESQERIRELKESLQEAKSLLGCRREELKELWQRSQEYKEMIEILDQIEELRQVPDKIESL 142 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999975
No 3
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=99.71 E-value=8.3e-16 Score=160.72 Aligned_cols=186 Identities=19% Similarity=0.288 Sum_probs=175.4
Q ss_pred HHHhHhhhCCCCCCchhHHHhhcCCC-----chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH
Q 006551 20 LARIEVSWVAPRFDSLPHVVHILTSK-----DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESA 94 (641)
Q Consensus 20 L~~I~~eW~~~~Fd~l~~vL~lLss~-----~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSq 94 (641)
|++|++.|+.++|||..+.++-+... ..+...++|..+++.++..|...|.+||++|.+++++...|...+.++.
T Consensus 1 l~si~~~yF~~~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~ 80 (291)
T PF10475_consen 1 LESIPAIYFDEDFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEAL 80 (291)
T ss_pred CCCCcHhhcCCCCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999998655 3456678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhcc
Q 006551 95 ESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLERE 174 (641)
Q Consensus 95 e~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~~ 174 (641)
..|+++|+.|..++..+....-++.++..+++.+.++++.|..|..+++....|+.++++++|.+|.+++.++..+++
T Consensus 81 ~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~-- 158 (291)
T PF10475_consen 81 VICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLE-- 158 (291)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHh
Q 006551 175 GLQTVGALQDVRSELTKLRGVLFYKVLEDLHAH 207 (641)
Q Consensus 175 eL~~I~AL~dLRs~L~~qe~~L~d~LvEELh~h 207 (641)
++.++.++++|+.+|+.....+-++|-.+|...
T Consensus 159 ~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~ 191 (291)
T PF10475_consen 159 ELKGYSCVRHLSSQLQETLELIEEQLDSDLSKV 191 (291)
T ss_pred hcccchHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999888888654
No 4
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=4.3e-10 Score=129.63 Aligned_cols=203 Identities=13% Similarity=0.221 Sum_probs=179.5
Q ss_pred CCCCCCChHHHHHHHHHhHhhhCCCCCCc-----hhHHHh---h-cC----CCc--h----hHHHHHHHHHHHHHHHHHH
Q 006551 6 GLPISPEKAYLREELARIEVSWVAPRFDS-----LPHVVH---I-LT----SKD--R----EGEVQILKDQNDIIEEVVD 66 (641)
Q Consensus 6 ~~p~p~d~~~l~evL~~I~~eW~~~~Fd~-----l~~vL~---l-Ls----s~~--r----E~e~~~Le~~~~~l~~~L~ 66 (641)
|.|.|..-......|+.|..-|..++|.- ...|+. + +. +.+ + ..-.++|..++|.++-.|-
T Consensus 181 ~~~~~~~~~~~~~~l~sVPsiffk~dF~Lddp~TF~~V~~~id~t~~~~a~~~~~~~~~~~~~LQekLs~yLDvVE~~La 260 (951)
T KOG2115|consen 181 EADGPSTRGGDATDLSSVPSIFFKSDFQLDDPATFHSVLPAIDLTLTKTAMNRQAERLEANSALQEKLSHYLDVVELHLA 260 (951)
T ss_pred CCCCccccccchhhHHhCcchhcCCcccCCCcchHhhhccccccchhcccccCChhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888899999999999866542 122333 2 11 112 1 2223688889999999999
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcchH
Q 006551 67 EVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPA 146 (641)
Q Consensus 67 ~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~ 146 (641)
.-|....+.|..+|.+++.++..+-++-+.++.||++|++........+..+.++..++.++.++++.|..|+.|.+...
T Consensus 261 ~eIs~~SdsFfha~~~~~~Lq~~~~d~~~~vk~Lre~i~~vd~~~~~~s~~Ile~~~~r~n~~kL~~kL~~i~~V~~~q~ 340 (951)
T KOG2115|consen 261 QEISKRSDSFFHAMTSLHNLQKELRDTMSEVKELRENIKEVDAENVRKSIKILELALTRKNVEKLLQKLRLIATVHQAQS 340 (951)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHhH
Q 006551 147 RIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHL 208 (641)
Q Consensus 147 kIE~lIseK~Yl~Av~LL~~s~~ll~~~eL~~I~AL~dLRs~L~~qe~~L~d~LvEELh~hL 208 (641)
++..++++.+|.+|.+++...+.+|.+.+|.+|.+.++||.|+.+..+++-.||++|+...+
T Consensus 341 ~vq~ll~~~d~~~ALdlI~t~q~~L~g~eL~gl~sfrhL~~ql~el~~tI~~m~t~eF~~~~ 402 (951)
T KOG2115|consen 341 TVQLLLSTQDFVGALDLIKTIQELLKGSELLGLHSFRHLRSQLLELYKTIDKMLTREFSTYS 402 (951)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhhcCchhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999789999999999999999999999999999996643
No 5
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=98.20 E-value=7.9e-05 Score=85.61 Aligned_cols=172 Identities=17% Similarity=0.284 Sum_probs=143.6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHhccCcHHHH
Q 006551 42 LTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVD-L-AEAKRRLGTRNKQLH 119 (641)
Q Consensus 42 Lss~~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~-L-~~aK~~L~~rr~eLk 119 (641)
|+..+.+....+|.+....+...+.+.|++||.+|-..+.+-.+++.........|..+.+. . ......|.....++.
T Consensus 7 l~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~ 86 (593)
T PF06248_consen 7 LSKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQ 86 (593)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 45567788889999999999999999999999999999999888888777777777444433 1 233444555566777
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhc---cCCCCCCchHHHHHHHHHhHHHH
Q 006551 120 QLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER---EGLQTVGALQDVRSELTKLRGVL 196 (641)
Q Consensus 120 ~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~---~eL~~I~AL~dLRs~L~~qe~~L 196 (641)
.|-.+-..-..++++|+.|.++.+.=+.++..+.+++|..|.++|.+....++. ........++.|+.++..+++.|
T Consensus 87 ~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L 166 (593)
T PF06248_consen 87 ELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENL 166 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHH
Confidence 777777777888899999999988889999999999999999999999999986 34556789999999999999999
Q ss_pred HHHHHHHHHHhHhcCCC
Q 006551 197 FYKVLEDLHAHLYNRGE 213 (641)
Q Consensus 197 ~d~LvEELh~hLYlKs~ 213 (641)
...|-++..+.+-.+.+
T Consensus 167 ~~~L~~~w~~lv~~~~~ 183 (593)
T PF06248_consen 167 QYQLSEEWERLVQWDSP 183 (593)
T ss_pred HHHHHHHHHhheeecCC
Confidence 99999999998887654
No 6
>PF15469 Sec5: Exocyst complex component Sec5
Probab=98.13 E-value=0.0001 Score=72.22 Aligned_cols=142 Identities=20% Similarity=0.238 Sum_probs=123.4
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHH
Q 006551 63 EVVDEVVHAYHTGFNKAIQNYSQILRLFSESAES------IKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLD 136 (641)
Q Consensus 63 ~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~------I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd 136 (641)
..|+.+|.+|+..|-++-.+...|...+...... +..|++.+..+.......-..|.+-..+...++.++..|.
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~ 81 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQ 81 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999877765 8999999999999988888889999999999999999999
Q ss_pred HHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHH
Q 006551 137 QIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLH 205 (641)
Q Consensus 137 ~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~~eL~~I~AL~dLRs~L~~qe~~L~d~LvEELh 205 (641)
.-+.+-.+|.+|...|.+++|..|++-..++..+.+. ....+..++.+.++.+..-+.+-+.|.+.|.
T Consensus 82 r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~-~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~ 149 (182)
T PF15469_consen 82 RNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEK-YKQQVPVFQKVWSEVEKIIEEFREKLWEKLL 149 (182)
T ss_pred HHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987 2236677777777776665555555555553
No 7
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=98.02 E-value=0.00043 Score=75.93 Aligned_cols=179 Identities=17% Similarity=0.301 Sum_probs=153.2
Q ss_pred CCCCchhHHHhhcCCC----chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006551 30 PRFDSLPHVVHILTSK----DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLA 105 (641)
Q Consensus 30 ~~Fd~l~~vL~lLss~----~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~ 105 (641)
++|||+++.=.++... +...-...++.....++..+.+.|.++...=..+=.....+...|.+=-.+|..+|..=+
T Consensus 2 ~dfdpv~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~ 81 (383)
T PF04100_consen 2 PDFDPVDYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAE 81 (383)
T ss_pred CCCCHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999654 556666788888888999999999888643344444556667777777888888888888
Q ss_pred HHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhc-cCCCCCCchHH
Q 006551 106 EAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER-EGLQTVGALQD 184 (641)
Q Consensus 106 ~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~-~eL~~I~AL~d 184 (641)
.+...+..-..++++|=.....+...|.+|..+.-|...=++++.++.+|+|.+++.+|.-...+++. ....+|+-+..
T Consensus 82 ~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~yksi~~I~~ 161 (383)
T PF04100_consen 82 ESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPYKSIPQIAE 161 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcccCcHHHHH
Confidence 88888888889999999999999999999999999999999999999999999999999988888852 26789999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhHh
Q 006551 185 VRSELTKLRGVLFYKVLEDLHAHLY 209 (641)
Q Consensus 185 LRs~L~~qe~~L~d~LvEELh~hLY 209 (641)
|...+...+..|.+.+.+++.. +|
T Consensus 162 L~~~i~~l~~~L~~qI~~df~~-~f 185 (383)
T PF04100_consen 162 LSKRIDQLQNELKEQIFEDFEE-LF 185 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 9999999999999999999975 45
No 8
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=97.85 E-value=0.0012 Score=71.05 Aligned_cols=159 Identities=14% Similarity=0.186 Sum_probs=133.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhh
Q 006551 47 REGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSV 126 (641)
Q Consensus 47 rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~ 126 (641)
...+.+.|.+....++..++++...||..|-.+=.....|...+.+..+.+..+...|.+-......-.....+...+..
T Consensus 12 L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~r~ 91 (338)
T PF04124_consen 12 LFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEERK 91 (338)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467899999999999999999999999999999999999999999999999999997766665555555566666666
Q ss_pred hHHHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHH
Q 006551 127 TLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHA 206 (641)
Q Consensus 127 ~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~~eL~~I~AL~dLRs~L~~qe~~L~d~LvEELh~ 206 (641)
....+++-.+.+-+|..+|.-++.-|..++|.+|.++.....++..+ ..+++-++.+..+....-..+-+.|+.-|+.
T Consensus 92 ~~~~~l~~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~--~~~~~lv~~i~~ev~~~~~~ml~~Li~~L~~ 169 (338)
T PF04124_consen 92 KASLLLENHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSR--FPNIPLVKSIAQEVEAALQQMLSQLINQLRT 169 (338)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHh--ccCchhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 66777777788888899999999999999999999999988777665 4468888899888887777777777777754
Q ss_pred h
Q 006551 207 H 207 (641)
Q Consensus 207 h 207 (641)
-
T Consensus 170 ~ 170 (338)
T PF04124_consen 170 P 170 (338)
T ss_pred c
Confidence 4
No 9
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.0079 Score=70.39 Aligned_cols=173 Identities=13% Similarity=0.195 Sum_probs=136.2
Q ss_pred hHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 006551 36 PHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRN 115 (641)
Q Consensus 36 ~~vL~lLss~~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr 115 (641)
|..-++++....+.-+++|+.--..-+..+..+-+.|||+|-.+|..-.++....++=+..|...-.+|.++-..|-...
T Consensus 35 P~lRs~~d~~~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~~ 114 (800)
T KOG2176|consen 35 PTLRSVYDGNQHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQESGKELIVKK 114 (800)
T ss_pred hHHHHHHccCCcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 44555566666667677887766667899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHhHHH
Q 006551 116 KQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGV 195 (641)
Q Consensus 116 ~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~~eL~~I~AL~dLRs~L~~qe~~ 195 (641)
++|.+...-+....+.++.|..-=.+...-.|..++|++|+|+.|.+.+. .+...-=+.+.+-.-+.-+-.+.-..+..
T Consensus 115 e~lv~~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktle-~lE~~yL~~~~~~~~~~~i~~~Ip~ik~~ 193 (800)
T KOG2176|consen 115 EDLVRCRTQSRNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTLE-SLEKVYLPRVSNFRFLIVIQNRIPFIKEV 193 (800)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHHhcccchhhHHHhhcchHHHHH
Confidence 99999999998888888888888888888899999999999999998764 33333223444444444444555556667
Q ss_pred HHHHHHHHHHHhHh
Q 006551 196 LFYKVLEDLHAHLY 209 (641)
Q Consensus 196 L~d~LvEELh~hLY 209 (641)
+-++...++++-+.
T Consensus 194 i~~~~~~~~~e~L~ 207 (800)
T KOG2176|consen 194 IKSKSMSDFREWLE 207 (800)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777663
No 10
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=97.17 E-value=0.0004 Score=65.08 Aligned_cols=124 Identities=14% Similarity=0.172 Sum_probs=41.0
Q ss_pred CCCCCCchhHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006551 28 VAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEA 107 (641)
Q Consensus 28 ~~~~Fd~l~~vL~lLss~~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~a 107 (641)
..++|||-..+...-.-.+.+.-...|....+.++..|-++||++|++|-+-=.+...+-..|.+-+.-+..+++.+.+.
T Consensus 9 ~~~~Fd~d~Fl~~~~~~~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~ 88 (133)
T PF06148_consen 9 TKPDFDVDEFLSSNRRYVSLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVESV 88 (133)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34899999988883334578888889999999999999999999999999998999999999999999999999999999
Q ss_pred HHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHH
Q 006551 108 KRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKL 151 (641)
Q Consensus 108 K~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~l 151 (641)
+..+......+...-.......+....|..+-.+..+=.++|.+
T Consensus 89 ~~~l~~~~~~i~~~l~~~~~l~~~k~~l~~~l~~~~~~~kle~l 132 (133)
T PF06148_consen 89 RDELDNTQEEIEDKLEERKELREEKALLKLLLDISESLEKLEDL 132 (133)
T ss_dssp HHS-STTHHHHHHHHHHHHHHHHHHHT-SSSSHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 99999999999888888777777777776666666666666654
No 11
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=97.13 E-value=0.014 Score=54.99 Aligned_cols=90 Identities=11% Similarity=0.213 Sum_probs=69.7
Q ss_pred hhCCCCCCchhHHHhhcC--------CCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006551 26 SWVAPRFDSLPHVVHILT--------SKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESI 97 (641)
Q Consensus 26 eW~~~~Fd~l~~vL~lLs--------s~~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I 97 (641)
.|-.|+|||..++=.+|. ..+....+.+|....+.+++.|+..|.+||..+-+....-......++.-+..+
T Consensus 2 ~fl~~dFd~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v 81 (132)
T PF10392_consen 2 AFLSPDFDPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSV 81 (132)
T ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 355699999999999986 446788889999999999999999999999999887777666666666666666
Q ss_pred HHHHHHHHHHHHHhccCc
Q 006551 98 KELKVDLAEAKRRLGTRN 115 (641)
Q Consensus 98 ~~lK~~L~~aK~~L~~rr 115 (641)
..|..+...-+..+...-
T Consensus 82 ~~L~~s~~RL~~eV~~Py 99 (132)
T PF10392_consen 82 ESLQSSYERLRSEVIEPY 99 (132)
T ss_pred HHHHHHHHHHHHHHhhHH
Confidence 666666555555544433
No 12
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.087 Score=61.38 Aligned_cols=194 Identities=14% Similarity=0.223 Sum_probs=150.1
Q ss_pred HHHHHhHhhhCCCCCCchhHHHhhcCCC----chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 006551 18 EELARIEVSWVAPRFDSLPHVVHILTSK----DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSES 93 (641)
Q Consensus 18 evL~~I~~eW~~~~Fd~l~~vL~lLss~----~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseS 93 (641)
+++..|....+.++|+.+.+.=.++... +.+.-.++++..-..+++.|+.+|..+-+.=.+.=-.-..+...|.+-
T Consensus 5 ~v~~~I~q~~~t~~f~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL 84 (793)
T KOG2180|consen 5 NVLYDINQMIPTPEFNFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEEL 84 (793)
T ss_pred hHHHHHHHhcCCcchhHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHH
Confidence 5777888888889999999999888643 667777788878888999999999866554444433344444555555
Q ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhc
Q 006551 94 AESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER 173 (641)
Q Consensus 94 qe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~ 173 (641)
-..|..+|..-+.....+..-..++++|=-....+..-|..|..+.-|...=+++..+++++.|-+|+..+.--..+++-
T Consensus 85 ~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~ 164 (793)
T KOG2180|consen 85 FQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNH 164 (793)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHH
Confidence 55555555555555555555567788888888888888999999999999999999999999999999999988888872
Q ss_pred -cCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHhHhcC
Q 006551 174 -EGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNR 211 (641)
Q Consensus 174 -~eL~~I~AL~dLRs~L~~qe~~L~d~LvEELh~hLYlK 211 (641)
..-.+|+-+..|+..+...+..|...+.+.+.+.-=.+
T Consensus 165 F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~ 203 (793)
T KOG2180|consen 165 FIAYKSVDEIANLSESIDKLKKSLLSQIFQDFKAAFSGG 203 (793)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 14568999999999999999999999999986543333
No 13
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.14 Score=58.61 Aligned_cols=177 Identities=17% Similarity=0.236 Sum_probs=135.4
Q ss_pred hCCCCCCchhHHHhhcCCC--chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006551 27 WVAPRFDSLPHVVHILTSK--DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDL 104 (641)
Q Consensus 27 W~~~~Fd~l~~vL~lLss~--~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L 104 (641)
|..++|+ .++..+.++. ...++...|-+....++..++.+-..+|..|-..=..++.|...++.++.....+--.+
T Consensus 16 ~~~~~~~--~~v~~l~~~~~e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l~l~~ 93 (581)
T KOG2069|consen 16 RNSPEMD--AYVRELTTKPLEELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKELSLQL 93 (581)
T ss_pred ccCchhH--HHHHHHcCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhh
Confidence 4334444 3555555533 55666677888889999999999999999999988999999999999998877766554
Q ss_pred HHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhccCCCCCCchHH
Q 006551 105 AEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQD 184 (641)
Q Consensus 105 ~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~~eL~~I~AL~d 184 (641)
-+-.+....-.+....+....-.-+-+++..+++-++..+|+.++..|...+|.+|.++..-+.++-++.+.. +..++
T Consensus 94 ~~L~s~~~~f~~~~~~i~e~~~~~~~~l~~~~~l~ellelp~lM~~cir~~~~~ealel~a~~~RL~~~~~~~--pvi~~ 171 (581)
T KOG2069|consen 94 PELTSPCKRFQDFAEEISEHRRLNSLTLDKHPQLLELLELPQLMDRCIRNGYYDEALELAAYASRLKQRFGTI--PVIQE 171 (581)
T ss_pred HHhhhHHHHHHHHHHHhhHhHHHHHHHHhhcchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcccc--hHHHH
Confidence 4433333322344444444455556678888889999999999999999999999999999999988775544 88999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHh
Q 006551 185 VRSELTKLRGVLFYKVLEDLHAH 207 (641)
Q Consensus 185 LRs~L~~qe~~L~d~LvEELh~h 207 (641)
++++....-..|-+.|++-|..-
T Consensus 172 i~~~v~~tv~~ll~qL~~~l~~p 194 (581)
T KOG2069|consen 172 IATEVEQTVQKLLEQLIQQLRTP 194 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999888888888888877543
No 14
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.058 Score=60.61 Aligned_cols=185 Identities=14% Similarity=0.094 Sum_probs=134.3
Q ss_pred hCCCCCCchhHHHhhcCCCchhHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006551 27 WVAPRFDSLPHVVHILTSKDREGEVQI---LKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVD 103 (641)
Q Consensus 27 W~~~~Fd~l~~vL~lLss~~rE~e~~~---Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~ 103 (641)
-+.+.|||--|+..++...+++.-++. .-.+-..++..++.+|.|+|+-|..+-.+..+|.+.+..-...+..+-+.
T Consensus 28 lngahFDpEvyldkL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~me~eMd~L~~~ 107 (636)
T KOG2346|consen 28 LNGAHFDPEVYLDKLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGMEQEMDGLEEV 107 (636)
T ss_pred cCCCCCCHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhhcchhhhHHHH
Confidence 356899999999888876655433321 22233577999999999999999999888889888888888877777777
Q ss_pred HHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhccCCCCCCchH
Q 006551 104 LAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQ 183 (641)
Q Consensus 104 L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~~eL~~I~AL~ 183 (641)
.....+....-...|.+=...-.+....-.+|.++..+...|.++..-+....|=+|+..-..|...+..| .+.+..+
T Consensus 108 ms~i~~~s~~l~g~L~ekre~I~kLg~~~~llrkvqfifdLP~rLrkc~~~~aYG~avR~~~~A~~~L~qY--~~~psfq 185 (636)
T KOG2346|consen 108 MSSIQSKSDGLAGSLFEKRELIKKLGQRPPLLRKVQFIFDLPRRLRKCGRAPAYGAAVRGSSEATGKLRQY--DGRPSFQ 185 (636)
T ss_pred HHHHhhhhccccchhHHhHHHHHHhcCCccchhhhHHHhhhHHHHHHhccccccchhhccccccccchhhc--CCCCcHH
Confidence 76555554444444433333333333444567888888899999999999999999999888888777664 3555555
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhHhcCCCcccc
Q 006551 184 DVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSA 217 (641)
Q Consensus 184 dLRs~L~~qe~~L~d~LvEELh~hLYlKs~~~~~ 217 (641)
+.+. ..+.++++++..|...+...+.-...
T Consensus 186 ~~~~----~seei~~rl~~qL~~rlr~~~sga~~ 215 (636)
T KOG2346|consen 186 EDDV----PSEEIRLRLVAQLGTKLRSDSSGAQA 215 (636)
T ss_pred Hhcc----chHHHHHHHHHHHHHHhccCCCCchh
Confidence 5544 44567888899999998887765443
No 15
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=94.88 E-value=0.34 Score=41.71 Aligned_cols=76 Identities=17% Similarity=0.164 Sum_probs=54.9
Q ss_pred CCCCCchhHHHhhcCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006551 29 APRFDSLPHVVHILTSKD---REGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDL 104 (641)
Q Consensus 29 ~~~Fd~l~~vL~lLss~~---rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L 104 (641)
.++|||-.++=.+|...+ ...-..+|.......+..|+.+|.+||..|-.+-..-..+-..+.+-+..+..++..+
T Consensus 3 ~~~fd~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~ 81 (87)
T PF08700_consen 3 SENFDVDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSI 81 (87)
T ss_pred CCcCCHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999986553 3444567788888899999999999999999965555555555544444444444444
No 16
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=93.99 E-value=8.1 Score=46.60 Aligned_cols=185 Identities=16% Similarity=0.183 Sum_probs=115.7
Q ss_pred hhCCCCCCchhHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHhHHHHHHHHHHHHHHHHHHH
Q 006551 26 SWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGF----NKAIQNYSQILRLFSESAESIKELK 101 (641)
Q Consensus 26 eW~~~~Fd~l~~vL~lLss~~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~F----N~sI~sYs~I~~~IseSqe~I~~lK 101 (641)
++.+++||+..-+=..+.+.+.+....+++.....+..+|+-.+.+=...+ ...+.+-=.+...+..-+..+..+|
T Consensus 4 ~f~~~~FD~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~ 83 (766)
T PF10191_consen 4 AFSDDDFDVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQ 83 (766)
T ss_pred hhCcCCCCHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 345689999888888886553332222232222233333332222221111 1222233345555555566666666
Q ss_pred HHHHHHHHHhccC-------cHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhcc
Q 006551 102 VDLAEAKRRLGTR-------NKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLERE 174 (641)
Q Consensus 102 ~~L~~aK~~L~~r-------r~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~~ 174 (641)
+.+...++.+..- =..|.+|-.-.......-+.|.+=+..-..-..|+.++..++|..+.+-|.+..+-+.-
T Consensus 84 ~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~- 162 (766)
T PF10191_consen 84 EQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRSLAV- 162 (766)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-
Confidence 6665555554321 12344444444455555666777777888889999999999999999999888887755
Q ss_pred CCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHhHhcCC
Q 006551 175 GLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRG 212 (641)
Q Consensus 175 eL~~I~AL~dLRs~L~~qe~~L~d~LvEELh~hLYlKs 212 (641)
|.+++-..+=|.+|+..++.|..++--.|...+=.++
T Consensus 163 -l~~~pd~~~r~~~le~l~nrLEa~vsp~Lv~al~~~~ 199 (766)
T PF10191_consen 163 -LQDVPDYEERRQQLEALKNRLEALVSPQLVQALNSRD 199 (766)
T ss_pred -HcCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHhcC
Confidence 7889999999999999999998888777766664443
No 17
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.28 E-value=17 Score=42.27 Aligned_cols=136 Identities=18% Similarity=0.205 Sum_probs=96.3
Q ss_pred CCCCCCCCCChHHHHHHHHHhHhhhCCCCCCchhHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 006551 3 IFDGLPISPEKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQN 82 (641)
Q Consensus 3 ~~~~~p~p~d~~~l~evL~~I~~eW~~~~Fd~l~~vL~lLss~~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~s 82 (641)
.+.|-|..+++==.+ +.++..++||.-.++-..=..+++|.-.+.|+-+++.+..++=++||+-|.+|-+-=.+
T Consensus 10 ~~~g~~~d~~kLcFd------k~eFmkedFdve~f~s~~R~~v~letLrddLrlylksl~~aMieLIN~DYADFVnLStn 83 (705)
T KOG2307|consen 10 LPNGFYIDESKLCFD------KTEFMKEDFDVERFMSLARQKVDLETLRDDLRLYLKSLQNAMIELINDDYADFVNLSTN 83 (705)
T ss_pred CCCCCCCCccccccC------hhhhccccCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhh
Confidence 344544444443333 55666789987766655556778999899999999999999999999999999875555
Q ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Q 006551 83 YSQI-------LRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKV 144 (641)
Q Consensus 83 Ys~I-------~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~v 144 (641)
--.+ ..-+.+-++.|..+|..+.++-..+..+..++..+....+.....+..+..||+|.++
T Consensus 84 LVgld~aln~i~qpL~qlreei~s~rgsV~ea~~alr~q~se~~~~Re~k~~lldl~~v~~~ieKL~k~ 152 (705)
T KOG2307|consen 84 LVGLDDALNKIEQPLNQLREEIKSTRGSVGEAERALRQQCSELCSNREKKIELLDLIYVLVAIEKLSKM 152 (705)
T ss_pred hccHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 4444555566666666666666677767777777777777777777777777766543
No 18
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.49 E-value=11 Score=44.65 Aligned_cols=161 Identities=9% Similarity=0.081 Sum_probs=109.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHH--HH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Q 006551 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTG--FN-KAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLW 122 (641)
Q Consensus 46 ~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~--FN-~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw 122 (641)
..+..++.+......+++.|+.++.+-.+- +| ..|+.-. +.+.-......++...+.....+-..-++..++|=
T Consensus 35 qi~~~le~~~~ee~~~~~~L~~lL~q~~~ie~~~~~~l~r~~---~~L~~v~~da~el~~~i~nt~~lAe~Vs~kVr~lD 111 (773)
T KOG0412|consen 35 QIDLLLERIAREEARVDKDLEALLSQQQTIEGENMSALTRSA---ENLLTVEGDAKELTDAIKNTCVLAETVSGKVRALD 111 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhh---hhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666778888889999999999874333 44 3333333 33333333344444444444444344467888898
Q ss_pred HHhhhHHHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHH----HhccCCCCCCchHHHHHHH---HHhHHH
Q 006551 123 YRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALM----LEREGLQTVGALQDVRSEL---TKLRGV 195 (641)
Q Consensus 123 ~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~l----l~~~eL~~I~AL~dLRs~L---~~qe~~ 195 (641)
...-..++.++..++|.+++.+-+-+..-|..++|..|...+.+.+.+ +....-..+.+...++..+ .+-++.
T Consensus 112 la~~Rv~~clq~v~dvrdlk~C~~gv~~Al~seDyE~AA~~IhRflslD~~~i~~~~~~~~~~ts~i~~~~~~L~~a~e~ 191 (773)
T KOG0412|consen 112 LAQNRVNECLQRVDDVRDLKNCIEGVDTALESEDYEKAATHIHRFLSLDQALIESRFAKQVVPTSEISDPYETLKEAKER 191 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHhhhhhhccCCchhhhhHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999887755 3332334455555554443 444556
Q ss_pred HHHHHHHHHHHhHh
Q 006551 196 LFYKVLEDLHAHLY 209 (641)
Q Consensus 196 L~d~LvEELh~hLY 209 (641)
|...+-++++..+=
T Consensus 192 L~~l~~~~f~eA~r 205 (773)
T KOG0412|consen 192 LSKLFKERFTEAVR 205 (773)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666677766543
No 19
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=90.03 E-value=9.5 Score=45.28 Aligned_cols=147 Identities=12% Similarity=0.148 Sum_probs=107.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHH-------HHHHHHhhhHHHHHHH
Q 006551 62 EEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQL-------HQLWYRSVTLRHIISL 134 (641)
Q Consensus 62 ~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eL-------k~Lw~~s~~~k~mL~i 134 (641)
.+.|..+=..+-+.+-.+=..-..+...|.++...|.+|-..|......|..-++++ ..|-.....++.+++-
T Consensus 11 ~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~e 90 (701)
T PF09763_consen 11 SKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNE 90 (701)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH
Confidence 333333333444555555556677888888888888888888888888888888888 4455556667777777
Q ss_pred HHHHHHHhcchHHHHHHHhccCH---------HHHHHHHHHHHHH------HhccCCCCCCchHHHHHHHHHhHHHHHHH
Q 006551 135 LDQIEGIAKVPARIEKLIAGKQY---------YAAVQLHAQSALM------LEREGLQTVGALQDVRSELTKLRGVLFYK 199 (641)
Q Consensus 135 Ld~IE~Lk~vP~kIE~lIseK~Y---------l~Av~LL~~s~~l------l~~~eL~~I~AL~dLRs~L~~qe~~L~d~ 199 (641)
|+.|=.-..+|+.-...+.+..+ ..|...|..|+.. -..+++..+.|+++=|..++.....+...
T Consensus 91 L~~Ll~~l~i~~~~l~~L~~~~l~~~~~l~~~e~a~~~L~~Al~~i~~~~~~~~~~~~~M~Av~er~~~~~~~~~~F~~r 170 (701)
T PF09763_consen 91 LENLLDTLSIPEEHLEALRNASLSSPDGLEKIEEAAEALYKALKAIRPDLEKLDPGLGQMRAVKERREEYEKVSDKFCKR 170 (701)
T ss_pred HHHHHHhcCCCHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776666788888877777766 3466677777777 33358888999999999999998888888
Q ss_pred HHHHHHHhH
Q 006551 200 VLEDLHAHL 208 (641)
Q Consensus 200 LvEELh~hL 208 (641)
+++.|.+..
T Consensus 171 ~~~~l~~~F 179 (701)
T PF09763_consen 171 LSRFLNNMF 179 (701)
T ss_pred HHHHHHHHH
Confidence 888876665
No 20
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=87.84 E-value=59 Score=38.29 Aligned_cols=186 Identities=16% Similarity=0.215 Sum_probs=109.9
Q ss_pred CChHHHHHHHHHhHhhhCCCCCCchhHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 006551 11 PEKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLF 90 (641)
Q Consensus 11 ~d~~~l~evL~~I~~eW~~~~Fd~l~~vL~lLss~~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~I 90 (641)
++-..+++++..+.....+ +.|-..|.+.+ .|++..+.++..|+++=..--|.|.+.=..-.+..+.|
T Consensus 17 ~~~~~le~~~~~~~~~~~~------e~v~~~lktg~------~lr~y~~~ve~~l~k~e~~Siqdyi~es~~~~~lhNqi 84 (683)
T KOG1961|consen 17 SEDISLEEVLSQLQECLDD------ELVKEALKTGD------DLREYSKQVENELRKAERKSIQDYIKESENLASLHNQI 84 (683)
T ss_pred hhHHHHHHHHHHHHHhcch------HHHHHHHhcCC------cchHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhHhhhH
Confidence 3444566666666665551 12223332221 23333444555555544444444444444444455566
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHH-------HH-HHHHHhcchHHHHHHHh----ccCHH
Q 006551 91 SESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISL-------LD-QIEGIAKVPARIEKLIA----GKQYY 158 (641)
Q Consensus 91 seSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~i-------Ld-~IE~Lk~vP~kIE~lIs----eK~Yl 158 (641)
..+...+.+|-..|..=...|+.-+.+++.|-.+|....--|+- |. -|+.+---|+.|+.-+. +..|.
T Consensus 85 ~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~Nrq~v~s~Ls~fVdd~iVpp~lI~~I~~g~vne~~f~ 164 (683)
T KOG1961|consen 85 RACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLRLENRQAVESKLSQFVDDLIVPPELIKTIVDGDVNEPEFL 164 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHhccccCCHHHHHHHHcCCCCchHHH
Confidence 66666666666666666666766666776666666543322222 22 24555555555555543 45899
Q ss_pred HHHHHHHHHHHHHh-ccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHhH
Q 006551 159 AAVQLHAQSALMLE-REGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHL 208 (641)
Q Consensus 159 ~Av~LL~~s~~ll~-~~eL~~I~AL~dLRs~L~~qe~~L~d~LvEELh~hL 208 (641)
+|.+.|..=++..+ ..+..+-.|+.|++.-|+..+..-..++-+=|-.-|
T Consensus 165 ~~LeeL~~Kl~~v~~dq~~k~a~a~~Dv~~lLdkLR~KAi~kir~~IlqkI 215 (683)
T KOG1961|consen 165 EALEELSHKLKLVELDQSNKDAKALKDVEPLLDKLRLKAIEKIREFILQKI 215 (683)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888 668889999999999998887766555444444333
No 21
>PRK11637 AmiB activator; Provisional
Probab=82.01 E-value=53 Score=36.71 Aligned_cols=147 Identities=13% Similarity=0.186 Sum_probs=70.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHh
Q 006551 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRS 125 (641)
Q Consensus 46 ~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s 125 (641)
..+.++.++++..+.+++.++.+=.+. +........+...|...+.++..+...+...+..+.....+|.++-.+-
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~----~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQR----ASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566655555555554322222 2233334444455555555555555555555555555555555444443
Q ss_pred hhHHH-HHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHhHHHHHH
Q 006551 126 VTLRH-IISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFY 198 (641)
Q Consensus 126 ~~~k~-mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~~eL~~I~AL~dLRs~L~~qe~~L~d 198 (641)
...+. +-+.+..+-.--.+. -++.+++...+-.+.+++. -+..+...+-.-|..+.+.+.+|..++..|-+
T Consensus 120 ~~~~~~l~~rlra~Y~~g~~~-~l~vLl~a~~~~~~~r~~~-~l~~i~~~d~~~l~~l~~~~~~L~~~k~~le~ 191 (428)
T PRK11637 120 AAQERLLAAQLDAAFRQGEHT-GLQLILSGEESQRGERILA-YFGYLNQARQETIAELKQTREELAAQKAELEE 191 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCc-HHHHHhcCCChhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222 222233333333332 4666777666644443221 22223333445566677777777766666543
No 22
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=80.36 E-value=54 Score=34.98 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHHHHHHH-HHHHhccCcHHHHHHH
Q 006551 50 EVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQIL-----RLFSESAESIKELKVDLAE-AKRRLGTRNKQLHQLW 122 (641)
Q Consensus 50 e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~-----~~IseSqe~I~~lK~~L~~-aK~~L~~rr~eLk~Lw 122 (641)
...+|++....+...++..+..+.+.++..-..+..-. ..+...++++..+++.|.. .+..|...+..|..+.
T Consensus 148 ~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~p~~~l~~~~~~Ld~l~~rL~~~~~~~l~~~~~~L~~l~ 226 (319)
T PF02601_consen 148 LLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRLPERKLEQQQQRLDELKQRLKQAIQQKLQRKRQRLQNLS 226 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555566666666666666666666555554433 4566666666666666654 4444455555555544
No 23
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=78.13 E-value=75 Score=36.61 Aligned_cols=127 Identities=20% Similarity=0.342 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhH-------HHHHHHHHH-HHHHhcchHHHHHHHhc
Q 006551 83 YSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTL-------RHIISLLDQ-IEGIAKVPARIEKLIAG 154 (641)
Q Consensus 83 Ys~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~-------k~mL~iLd~-IE~Lk~vP~kIE~lIse 154 (641)
+...-..|.++.+.+..|.+.|..=+..|+.-+.++..|-.+|... +.+.+.|.. |+.+.=-|+-|+..+.+
T Consensus 16 ~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ipP~lI~~I~~~ 95 (508)
T PF04129_consen 16 FADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIVIPPDLIRSICEG 95 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCHHHHHhHhcC
Confidence 3444445566666666666666666666666666666666665543 334444444 44555444444444433
Q ss_pred c---CHHH-HHHHHHHHHHHHhccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHhHh
Q 006551 155 K---QYYA-AVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLY 209 (641)
Q Consensus 155 K---~Yl~-Av~LL~~s~~ll~~~eL~~I~AL~dLRs~L~~qe~~L~d~LvEELh~hLY 209 (641)
. +|.. +.+++.+-..........+..|.+|++..|+..+..-.+.+-+=|...|+
T Consensus 96 ~v~e~~~~~~~~~~~k~~~~~~~~~~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI~ 154 (508)
T PF04129_consen 96 PVNEQYIEELLELLKKKIFFSKDQSFKDSKAIKDVKPELEKLKNKAVERIRDFLLKKIK 154 (508)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3444 45666665655555678899999999999988877665555444444443
No 24
>PRK10869 recombination and repair protein; Provisional
Probab=74.57 E-value=1.6e+02 Score=34.34 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=11.5
Q ss_pred hHHHHHHHHHhHH----HHHHHHHHHHHH
Q 006551 182 LQDVRSELTKLRG----VLFYKVLEDLHA 206 (641)
Q Consensus 182 L~dLRs~L~~qe~----~L~d~LvEELh~ 206 (641)
+..+...|...++ .|...+.++|++
T Consensus 357 l~~~A~~LS~~R~~aA~~l~~~v~~~L~~ 385 (553)
T PRK10869 357 ALETAQKLHQSRQRYAKELAQLITESMHE 385 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445554444 344444555533
No 25
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=74.32 E-value=9.6 Score=40.88 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=68.7
Q ss_pred cCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHh
Q 006551 113 TRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKL 192 (641)
Q Consensus 113 ~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~~eL~~I~AL~dLRs~L~~q 192 (641)
...++|.+|......++++-++...+-=...+|+-|+.+|.+++|.+|++.+. ++.+.++ .+-+.=|+.||+.-
T Consensus 146 Fd~del~~Lv~~va~~~~a~~L~~sLgl~~k~~d~V~~LI~~g~~ieAv~fi~-~f~L~dk-----fpPv~lLk~yl~~~ 219 (290)
T PF07899_consen 146 FDEDELLKLVVSVARRKQAPELCRSLGLSDKMPDIVEKLIKKGKQIEAVRFIY-AFGLVDK-----FPPVPLLKSYLEDS 219 (290)
T ss_pred cCHHHHHHHHHHhcchHhhHHHHHHcCchhhhHHHHHHHHHCCCccchHHHHH-HHcCCCC-----CCCHHHHHHHHHHH
Confidence 35799999999999999999999888888899999999999999999999854 7777766 55667799999987
Q ss_pred HHHHHHH
Q 006551 193 RGVLFYK 199 (641)
Q Consensus 193 e~~L~d~ 199 (641)
+++-..+
T Consensus 220 k~~~~~~ 226 (290)
T PF07899_consen 220 KKAAKRI 226 (290)
T ss_pred HHHHHHH
Confidence 7776443
No 26
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=72.70 E-value=93 Score=32.56 Aligned_cols=106 Identities=14% Similarity=0.223 Sum_probs=63.0
Q ss_pred ChHHHHHHHHHhHhhhCCCCCCchhHHHhhcCCC--chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 006551 12 EKAYLREELARIEVSWVAPRFDSLPHVVHILTSK--DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRL 89 (641)
Q Consensus 12 d~~~l~evL~~I~~eW~~~~Fd~l~~vL~lLss~--~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~ 89 (641)
++..++++++.+..--..-+-+.+...+.-+... ++.. .+.+..+.+. .+-+.++.+...+...|.+...+.+.
T Consensus 128 ~~~~l~~ll~~~~~ll~~~~~~~l~~~l~~l~~~l~~~~~---~l~~~l~~l~-~l~~~l~~~~~~i~~ll~~l~~l~~~ 203 (291)
T TIGR00996 128 VPPEIDDLLGSLTRLLNGLDPEKLNAILNALAEALAGQGP---QLRNLLDGLA-QLTAALNARDGDIGALIDNLNRVLDV 203 (291)
T ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcH---HHHHHHHHHH-HHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 4556667766666554432223334344333211 2222 3333333333 23334456677888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH
Q 006551 90 FSESAESIKELKVDLAEAKRRLGTRNKQLHQL 121 (641)
Q Consensus 90 IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~L 121 (641)
+.+.++.+..+-+++...-..|..++++|.++
T Consensus 204 l~~~~~~l~~~v~~l~~~~~~l~~~~~~l~~~ 235 (291)
T TIGR00996 204 LADRSDQLDRLLDNLATLTAQLADRDDALDDA 235 (291)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 88888888888888887777777666666544
No 27
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=70.15 E-value=47 Score=39.71 Aligned_cols=104 Identities=13% Similarity=0.077 Sum_probs=65.0
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 006551 63 EVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIA 142 (641)
Q Consensus 63 ~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk 142 (641)
..|+..|-+-|.+.-.+--+...+.+.-..--+.|+.++.+...-+..-...++.+.+++-..+.| --+--+|..|.
T Consensus 38 EELRqmVGeRYRDLleAADtI~hM~sla~~L~~~I~~t~~ncrsL~a~svA~tp~raeqnp~~e~~---Yg~aaqVKyLv 114 (863)
T KOG2033|consen 38 EELRQMVGERYRDLLEAADTIRHMCSLADKLASDIANTRVNCRSLHANSVAKTPGRAEQNPAGEHL---YGTAAQVKYLV 114 (863)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCcchhhcCchhhHH---HHHHHHHHHHH
Confidence 456666666666665544444444433333344444444444433333344566777776444433 33456889999
Q ss_pred cchHHHHHHHhccCHHHHHHHHHHHHH
Q 006551 143 KVPARIEKLIAGKQYYAAVQLHAQSAL 169 (641)
Q Consensus 143 ~vP~kIE~lIseK~Yl~Av~LL~~s~~ 169 (641)
..|+.|=..+.+.+|++|+++...+.-
T Consensus 115 ~~PE~IWg~lD~s~fl~At~ly~~~~H 141 (863)
T KOG2033|consen 115 SSPELIWGHLDSSEFLDATVLYCMVEH 141 (863)
T ss_pred hCHHHhhccccccchHHHHHHHHHHHH
Confidence 999999999999999999998866543
No 28
>PF12854 PPR_1: PPR repeat
Probab=69.53 E-value=8.8 Score=27.69 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=23.2
Q ss_pred chhHHHHHHHHHHHHhhCChHHHHHHHHh
Q 006551 313 PLHVKYLQTMVECLCILGKVAAAGAIICQ 341 (641)
Q Consensus 313 ~dsf~Yi~~LlEsLn~LgKL~~Aldil~q 341 (641)
+|.+.| .+||.++++-|+++.|.+++.+
T Consensus 5 Pd~~ty-~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTY-NTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHH-HHHHHHHHHCCCHHHHHHHHHh
Confidence 455556 7899999999999999998753
No 29
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=69.40 E-value=3.3e+02 Score=34.95 Aligned_cols=65 Identities=17% Similarity=0.127 Sum_probs=52.4
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHH
Q 006551 65 VDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLR 129 (641)
Q Consensus 65 L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k 129 (641)
+.+...+-.++.+.+=.....+...|..+|+.+.++++..+.+...+......|.+||.+-.+++
T Consensus 1568 V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk 1632 (1758)
T KOG0994|consen 1568 VVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELK 1632 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556667777777788888889999999999999999999999999999999987766544
No 30
>PTZ00464 SNF-7-like protein; Provisional
Probab=68.92 E-value=1.1e+02 Score=31.45 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHhH
Q 006551 129 RHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHL 208 (641)
Q Consensus 129 k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~~eL~~I~AL~dLRs~L~~qe~~L~d~LvEELh~hL 208 (641)
+.+-++..+...|.++-..|+..-.+.....|...-..+++.+++ .+ +|.-+.+|..++..+-.. .+|+++.|
T Consensus 75 ~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k-~i-~id~Vd~l~Dei~E~~e~-----~~EI~e~L 147 (211)
T PTZ00464 75 NQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFK-KL-NVDKVEDLQDELADLYED-----TQEIQEIM 147 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 334455566677777778888888888889999999999999998 66 788888888888765543 45665555
Q ss_pred h
Q 006551 209 Y 209 (641)
Q Consensus 209 Y 209 (641)
=
T Consensus 148 s 148 (211)
T PTZ00464 148 G 148 (211)
T ss_pred h
Confidence 3
No 31
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.48 E-value=1.8e+02 Score=33.16 Aligned_cols=49 Identities=10% Similarity=0.146 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006551 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESI 97 (641)
Q Consensus 48 E~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I 97 (641)
...+.+|+++...+.+.+.. +-.++..++..++.|+.+...++......
T Consensus 280 ~~~i~~l~~~l~~l~~~~~~-~~~~~~~l~~~~~~~g~~~~~l~~~~~~~ 328 (503)
T KOG2273|consen 280 KEKIDKLEQQLKKLSKQVQR-LVKRRRELASNLAELGKALAQLSALEGET 328 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 45556777777777777777 77788999999999999999999888854
No 32
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=67.73 E-value=82 Score=37.26 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHhHhcCC
Q 006551 182 LQDVRSELTKLRGVLFYKVLEDLHAHLYNRG 212 (641)
Q Consensus 182 L~dLRs~L~~qe~~L~d~LvEELh~hLYlKs 212 (641)
|..++.++......-...-+.+..+.++.|.
T Consensus 492 l~~~~~~l~~~~~~~le~~~~~~f~~l~~k~ 522 (650)
T TIGR03185 492 LKEFREKLLERKLQQLEEEITKSFKKLMRKH 522 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4567777776655555555556666676664
No 33
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=65.75 E-value=1.5e+02 Score=32.02 Aligned_cols=80 Identities=18% Similarity=0.199 Sum_probs=40.1
Q ss_pred cCcHHHHHHHHHhhhHHHHHH----HHHHH-HHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhccCCCCCCchHHHHH
Q 006551 113 TRNKQLHQLWYRSVTLRHIIS----LLDQI-EGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRS 187 (641)
Q Consensus 113 ~rr~eLk~Lw~~s~~~k~mL~----iLd~I-E~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~~eL~~I~AL~dLRs 187 (641)
|...+|..+-.+=..++.-|+ .|++. +++..+-++|+++-.++. +...-|.++-+..+.-.-|+..-+..|+.
T Consensus 206 ~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~--~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~ 283 (325)
T PF08317_consen 206 CDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQ--ELLAEIAEAEKIREECRGWTRSEVKRLKA 283 (325)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 445555555555444444444 22222 334444445555444443 22233455555555545666666777777
Q ss_pred HHHHhHH
Q 006551 188 ELTKLRG 194 (641)
Q Consensus 188 ~L~~qe~ 194 (641)
.+...++
T Consensus 284 ~~~~Le~ 290 (325)
T PF08317_consen 284 KVDALEK 290 (325)
T ss_pred HHHHHHH
Confidence 6655443
No 34
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=65.67 E-value=1.5e+02 Score=30.66 Aligned_cols=83 Identities=20% Similarity=0.352 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhh
Q 006551 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT 127 (641)
Q Consensus 48 E~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~ 127 (641)
..++..+....+.+...+++++.. +++............+...+.++..+|..+...+..+...+..+.++-..-..
T Consensus 26 ~~~l~~~~~~~~~l~~~i~~~l~~---~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 26 RSELQQLKEENEELRRRIEEILES---DSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555541 12225667777888888888899999988888888888888888777666666
Q ss_pred HHHHHH
Q 006551 128 LRHIIS 133 (641)
Q Consensus 128 ~k~mL~ 133 (641)
.+..+.
T Consensus 103 ~~~~l~ 108 (302)
T PF10186_consen 103 RRSRLS 108 (302)
T ss_pred HHHHHH
Confidence 555555
No 35
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=61.61 E-value=1.7e+02 Score=30.73 Aligned_cols=142 Identities=15% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHhccCcHHHHHHHH
Q 006551 61 IEEVVDEVVHAYHTGFNKA----IQNYSQILRLFSESAESIKELKVDL-------------AEAKRRLGTRNKQLHQLWY 123 (641)
Q Consensus 61 l~~~L~~vV~eH~q~FN~s----I~sYs~I~~~IseSqe~I~~lK~~L-------------~~aK~~L~~rr~eLk~Lw~ 123 (641)
+..+|..+..+|...|... -..|++.+..+++++++|.+.|... ..-...+..-...-++|..
T Consensus 79 l~~aLs~~m~~~~~~l~~~~~~~~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle~ 158 (242)
T cd07600 79 LNHALSRAALASSLELKSLEPEDEDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSFQKAHKARKKVED 158 (242)
T ss_pred HHHHHHHHHHHHHHHhCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhHHHHHHHHHHH---HHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHhHH--HHHH
Q 006551 124 RSVTLRHIISLLDQI---EGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRG--VLFY 198 (641)
Q Consensus 124 ~s~~~k~mL~iLd~I---E~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~~eL~~I~AL~dLRs~L~~qe~--~L~d 198 (641)
++..|+.+-.-+... +.--...+.+| -++.+|..|.+.-...+.-+ +.+..-++.|+.-+..|-. .-.-
T Consensus 159 ~RLd~D~~K~~~~ka~~~~k~~~~~~e~E--~aEdef~~a~E~a~~~M~~i----l~~~e~i~~L~~fv~AQl~Yh~~~~ 232 (242)
T cd07600 159 KRLQLDTARAELKSAEPAEKQEAARVEVE--TAEDEFVSATEEAVELMKEV----LDNPEPLQLLKELVKAQLAYHKTAA 232 (242)
T ss_pred HHHHHHHHHHHHHhccccccccchHHHHH--HHHHHHHHhHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhH
Q 006551 199 KVLEDLHAHL 208 (641)
Q Consensus 199 ~LvEELh~hL 208 (641)
.++++|...+
T Consensus 233 e~L~~l~~~~ 242 (242)
T cd07600 233 ELLEELLSVL 242 (242)
T ss_pred HHHHHHhhcC
No 36
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=61.31 E-value=2.2e+02 Score=31.86 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=27.5
Q ss_pred HHHHhcchHHHHHHHhccCHHHHHHHHHHHHHH
Q 006551 138 IEGIAKVPARIEKLIAGKQYYAAVQLHAQSALM 170 (641)
Q Consensus 138 IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~l 170 (641)
++.+.++=..|+.++.+..|-.+.+-+++++.-
T Consensus 336 ~~ni~~vs~dv~~ft~D~~~r~~Lr~li~~Ls~ 368 (370)
T PLN03094 336 LKHIESISSDISGFTGDEATRRNLKQLIQSLSR 368 (370)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc
Confidence 456667888999999999999999999888754
No 37
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=60.92 E-value=88 Score=37.36 Aligned_cols=50 Identities=12% Similarity=0.224 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006551 58 NDIIEEVVDEVVHAYHTGFNKAI-QNYSQILRLFSESAESIKELKVDLAEA 107 (641)
Q Consensus 58 ~~~l~~~L~~vV~eH~q~FN~sI-~sYs~I~~~IseSqe~I~~lK~~L~~a 107 (641)
+..++..+..+++++.++-.... ..+..+.-.+.+|++.|..+++++...
T Consensus 186 F~al~~e~~~~~~~~~~~~~~~~~~d~~~l~vll~qCr~~v~~v~~~~~~~ 236 (643)
T PF10136_consen 186 FVALQREVEAFLEAYRQQDEDPDSEDLKHLRVLLDQCREQVDRVRKHLEKY 236 (643)
T ss_pred HHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34557777777777766554311 167778888888888888888888766
No 38
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=60.86 E-value=2.1e+02 Score=29.75 Aligned_cols=109 Identities=15% Similarity=0.232 Sum_probs=86.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CcHHHHHH
Q 006551 44 SKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNY-SQILRLFSESAESIKELKVDLAEAKRRLGT-RNKQLHQL 121 (641)
Q Consensus 44 s~~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sY-s~I~~~IseSqe~I~~lK~~L~~aK~~L~~-rr~eLk~L 121 (641)
.++....+..+-+....+.......+..=.+.|...+.++ ..-+..|+..+.++..-|=.+..||..+.. .+++++.-
T Consensus 83 dS~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~K~r~~k~~~eE~~~A 162 (223)
T cd07615 83 ESTFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKDLKEIGHHLKKLEGRRLDFDYKKKRQGKIPDEEIRQA 162 (223)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3356777788888888999999999999999999999999 577888999999999999999999999976 46777666
Q ss_pred HHHhhh-----HHHHHHHHHH-HHHHhcchHHHHHHH
Q 006551 122 WYRSVT-----LRHIISLLDQ-IEGIAKVPARIEKLI 152 (641)
Q Consensus 122 w~~s~~-----~k~mL~iLd~-IE~Lk~vP~kIE~lI 152 (641)
..+-.+ ...|..+|+. +|.++++-.-|++-+
T Consensus 163 ~~kfees~E~a~~~M~n~le~e~e~~~~L~~lv~AQl 199 (223)
T cd07615 163 VEKFEESKELAERSMFNFLENDVEQVSQLSVLIEAAL 199 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 555443 4557777777 777777666666555
No 39
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=60.16 E-value=2e+02 Score=30.15 Aligned_cols=140 Identities=13% Similarity=0.116 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HH--------H----hccCcHHHHHHHHHhhhH
Q 006551 62 EEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEA-KR--------R----LGTRNKQLHQLWYRSVTL 128 (641)
Q Consensus 62 ~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~a-K~--------~----L~~rr~eLk~Lw~~s~~~ 128 (641)
...|....-+|-.+|-.. ..|+..+..+++++++|..+|..+... +. . |..-....++|-.++..|
T Consensus 71 ~~~Lg~~M~~~g~~~g~~-S~~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~dik~i~k~RKkLe~rRLdy 149 (229)
T cd07616 71 PELLGQYMIDAGNEFGPG-TAYGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEGDYKTITKERKLLQNKRLDL 149 (229)
T ss_pred HHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555432 335555555555555555555554443 11 1 111123445555555555
Q ss_pred HHHHHHHHH--HHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHhHH--HHHHHHHHHH
Q 006551 129 RHIISLLDQ--IEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRG--VLFYKVLEDL 204 (641)
Q Consensus 129 k~mL~iLd~--IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~~eL~~I~AL~dLRs~L~~qe~--~L~d~LvEEL 204 (641)
+....-+.. -++-+.++ .-+-..++-+|.++.+.....+.-+..- ++.-+++|+.-++.|-. .-...++++|
T Consensus 150 D~~K~r~~kAk~~~~~~~~-e~elr~ae~efees~E~a~~~m~~i~~~---~~e~~~~L~~lv~AQl~Yh~~~~e~L~~L 225 (229)
T cd07616 150 DAAKTRLKKAKVAEARAAA-EQELRITQSEFDRQAEITRLLLEGISST---HAHHLRCLNDFVEAQMTYYAQCYQYMLDL 225 (229)
T ss_pred HHHHHHHhcCCcchhhcch-HHHHHHHHHHHHHHHHHHHHHHHhhhhc---ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555532 22222222 2333447777888888877766555431 44455666665554432 3333445555
Q ss_pred HH
Q 006551 205 HA 206 (641)
Q Consensus 205 h~ 206 (641)
+.
T Consensus 226 ~~ 227 (229)
T cd07616 226 QK 227 (229)
T ss_pred Hh
Confidence 54
No 40
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.77 E-value=3.9e+02 Score=32.37 Aligned_cols=139 Identities=15% Similarity=0.089 Sum_probs=95.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHH
Q 006551 47 REGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAI-------QNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLH 119 (641)
Q Consensus 47 rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI-------~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk 119 (641)
.....++|-+....++..|..-|-..|.+.-..- ..-..+...+++-|+.|+.+|..+.+-.+.+..+.-.|-
T Consensus 73 ia~q~~~L~q~lr~ldrqLh~qv~~Rh~allaQat~~~~~d~~l~sl~~~v~~lqs~i~riknd~~epyk~i~~kt~vl~ 152 (797)
T KOG2211|consen 73 IATQCDDLTQKLRELDRQLHAQVLKRHMALLAQATEELFEDLELRSLLVKVAELQSEIKRIKNDNKEPYKIIWLKTMVLT 152 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3444556655556666777666655444443222 223456677778888888888888888888888888888
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHH
Q 006551 120 QLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELT 190 (641)
Q Consensus 120 ~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~~eL~~I~AL~dLRs~L~ 190 (641)
+|....-..++...+|+-=..|+..-+- ..++...|.+.+.+=-.+++..+|.+|.-+..=+.++.
T Consensus 153 rLhva~~lLrrsgr~l~LskkL~~l~~~-----~~~d~traaq~lneLd~l~e~~dlsgIdvId~el~fv~ 218 (797)
T KOG2211|consen 153 RLHVAENLLRRSGRALELSKKLASLNSS-----MVVDATRAAQTLNELDSLLEVLDLSGIDVIDKELMFVS 218 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CCHhHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 8888888888887777665555521100 12246788888998889999999999998877666654
No 41
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=59.10 E-value=1.2e+02 Score=31.49 Aligned_cols=139 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHhccCcHHHHHHHHHhhhH
Q 006551 62 EEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAE-------------AKRRLGTRNKQLHQLWYRSVTL 128 (641)
Q Consensus 62 ~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~-------------aK~~L~~rr~eLk~Lw~~s~~~ 128 (641)
...|..+.-+|..+|...= .|+..+..+++++.+|..+|..+.. ....+..-...-++|..++..|
T Consensus 66 ~~~Lg~~M~~~g~elg~~S-~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLdy 144 (223)
T cd07592 66 EGLLGEVMLKYGRELGEDS-NFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKDLKEINHHRKKLEGRRLDY 144 (223)
T ss_pred ccHHHHHHHHHHhhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhccCCCCCCchHHH---HHHHHHhHHHHHHHHHHHHH
Q 006551 129 RHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDV---RSELTKLRGVLFYKVLEDLH 205 (641)
Q Consensus 129 k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~~eL~~I~AL~dL---Rs~L~~qe~~L~d~LvEELh 205 (641)
+..-..+... .+-|--.++.+|.++.+.....+.-+-..+-..|..|..+ ......+...+...|..+|.
T Consensus 145 D~~k~k~~k~-------~eeEl~~Ae~kfe~s~E~a~~~M~~il~~e~e~~~~L~~lveAQl~Yh~~~~e~L~~l~~~L~ 217 (223)
T cd07592 145 DYKKRKQGKG-------PDEELKQAEEKFEESKELAENSMFNLLENDVEQVSQLSALVEAQLDYHRQSAEILEELQSKLQ 217 (223)
T ss_pred HHHHHhcccC-------chHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhH
Q 006551 206 AHL 208 (641)
Q Consensus 206 ~hL 208 (641)
..+
T Consensus 218 ~~~ 220 (223)
T cd07592 218 ERI 220 (223)
T ss_pred HHh
No 42
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=58.56 E-value=3e+02 Score=32.16 Aligned_cols=80 Identities=21% Similarity=0.253 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHH-HHHHHHhcchHHHHHHHhccCHHHHH
Q 006551 83 YSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLL-DQIEGIAKVPARIEKLIAGKQYYAAV 161 (641)
Q Consensus 83 Ys~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iL-d~IE~Lk~vP~kIE~lIseK~Yl~Av 161 (641)
...+...=...+..|..+|+....+|+.|..++. .|...++.| ++++.+-.-=++.+.++..++|.+|-
T Consensus 124 l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~----------~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~ 193 (560)
T PF06160_consen 124 LDELLESEEKNREEIEELKEKYRELRKELLAHSF----------SYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAR 193 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------hhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3334444444445555555555555544433333 233333333 23555556678999999999999999
Q ss_pred HHHHHHHHHHh
Q 006551 162 QLHAQSALMLE 172 (641)
Q Consensus 162 ~LL~~s~~ll~ 172 (641)
+++...-..+.
T Consensus 194 eil~~l~~~~~ 204 (560)
T PF06160_consen 194 EILEKLKEETD 204 (560)
T ss_pred HHHHHHHHHHH
Confidence 99887665554
No 43
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=57.39 E-value=2.5e+02 Score=29.32 Aligned_cols=147 Identities=17% Similarity=0.220 Sum_probs=95.6
Q ss_pred HHHHHHHhHhhhCCCCCCchhHHHhhc-----------C-CCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhH
Q 006551 16 LREELARIEVSWVAPRFDSLPHVVHIL-----------T-SKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNY 83 (641)
Q Consensus 16 l~evL~~I~~eW~~~~Fd~l~~vL~lL-----------s-s~~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sY 83 (641)
+-+-++.|+-.++.+. -|....+| + .++....+..+-+....+..+-.+.+..=.+.|+..+.++
T Consensus 46 ~~~~~~k~rg~~k~~~---~p~~~~~Lg~~M~~~G~~lg~dS~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~ 122 (223)
T cd07614 46 MLNTVSKIRGQVKNPG---YPQSEGLLGETMIRYGKELGDESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNL 122 (223)
T ss_pred HHHHHHHHhccccCCC---CCChHhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777532 22222332 2 2355677777878888888888888888889999999999
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHhhh-----HHHHHHHHHH-HHHHhcchHHHHHHHhcc
Q 006551 84 S-QILRLFSESAESIKELKVDLAEAKRRLGTRN-KQLHQLWYRSVT-----LRHIISLLDQ-IEGIAKVPARIEKLIAGK 155 (641)
Q Consensus 84 s-~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr-~eLk~Lw~~s~~-----~k~mL~iLd~-IE~Lk~vP~kIE~lIseK 155 (641)
. .-+..++..+.++..-|=.+..||..+..+. ++|+.-..+-.+ ...|..+++. ++.++++-+-|++-+.
T Consensus 123 le~dik~i~k~RKkLe~rRLdyD~~K~r~~k~~eeelr~a~ekFees~E~a~~~M~~il~~e~e~~~~L~~lveAQl~-- 200 (223)
T cd07614 123 CDKDLKEIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQAMEKFEESKEVAETSMHNLLETDIEQVSQLSALVDAQLD-- 200 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH--
Confidence 6 7788999999999999999999999987643 456554433322 3345555555 5555555555554442
Q ss_pred CHHHHHHHHHHH
Q 006551 156 QYYAAVQLHAQS 167 (641)
Q Consensus 156 ~Yl~Av~LL~~s 167 (641)
-|-.|.++|.+-
T Consensus 201 Yh~qa~eiL~~l 212 (223)
T cd07614 201 YHRQAVQILDEL 212 (223)
T ss_pred HHHHHHHHHHHH
Confidence 233444444433
No 44
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=56.42 E-value=2.1e+02 Score=28.12 Aligned_cols=7 Identities=43% Similarity=0.620 Sum_probs=2.6
Q ss_pred cHHHHHH
Q 006551 115 NKQLHQL 121 (641)
Q Consensus 115 r~eLk~L 121 (641)
+..+.++
T Consensus 164 ~~~~~~~ 170 (191)
T PF04156_consen 164 RSQLERL 170 (191)
T ss_pred HHHHHHH
Confidence 3333333
No 45
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.95 E-value=1.1e+02 Score=37.59 Aligned_cols=170 Identities=14% Similarity=0.199 Sum_probs=99.9
Q ss_pred hCCCCCCchhHHHhhcCC---CchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHH
Q 006551 27 WVAPRFDSLPHVVHILTS---KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIK-ELKV 102 (641)
Q Consensus 27 W~~~~Fd~l~~vL~lLss---~~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~-~lK~ 102 (641)
...+.|+|-.+.++.=.. .+++....-|+...+.=...=..+|..+...|-.+..+-..|-..+..-.+... .+=.
T Consensus 166 l~se~Fspkw~L~enH~~ts~edLk~~i~~lK~~~n~~~~~~~~lvK~n~~~fi~~~dtl~~i~~kLe~~e~~~~gs~t~ 245 (934)
T KOG2347|consen 166 LRSEHFSPKWFLLENHQDTSFEDLKAGILNLKRDLNGRKEGSLQLVKDNFDSFISCKDTLDNIHQKLERGEEDPHGSGTT 245 (934)
T ss_pred cccccCChhHHHHhhhhhccHHHHHHHHHHHHHhhcchhhhhHHHHhcchhHHHHHHHHHHHHHHHHhccccCccchHHH
Confidence 345789999988887422 244444444444443333334456777777777666666666555555111111 1222
Q ss_pred HHHHHHHHhccCcHHH-HHHHHHhh---hHHHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhccCCCC
Q 006551 103 DLAEAKRRLGTRNKQL-HQLWYRSV---TLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQT 178 (641)
Q Consensus 103 ~L~~aK~~L~~rr~eL-k~Lw~~s~---~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~~eL~~ 178 (641)
+|..|-+....+.+-+ ..+..|.- .-+-++-+|.-...|-..|..|+.-|.+++|.-++.=-.++..+.-+
T Consensus 246 ~l~n~i~~~~s~ad~iF~~vl~Rk~~ADstRsvL~~lqRfkfLFnLp~~ier~i~kGeYd~vvndYekAKsl~~~----- 320 (934)
T KOG2347|consen 246 KLENCIKNSTSRADLIFEDVLERKDKADSTRSVLGVLQRFKFLFNLPSNIERSIKKGEYDTVVNDYEKAKSLFGK----- 320 (934)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcchhhhhHhhcCCceeeccchhhHHHhhcc-----
Confidence 2555555555444433 22322222 23367788888888889999999999999999888877777666655
Q ss_pred CCchHHHHHHHHHh-------HHHHHHHHHH
Q 006551 179 VGALQDVRSELTKL-------RGVLFYKVLE 202 (641)
Q Consensus 179 I~AL~dLRs~L~~q-------e~~L~d~LvE 202 (641)
.-+.-+|.+|++- +..|++.|++
T Consensus 321 -t~v~~Fkk~l~Eve~~m~~~k~~l~~kli~ 350 (934)
T KOG2347|consen 321 -TEVNLFKKVLEEVEKRMQSFKETLYRKLID 350 (934)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455555443 4455555543
No 46
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=55.77 E-value=3.9e+02 Score=31.13 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhh
Q 006551 90 FSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSV 126 (641)
Q Consensus 90 IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~ 126 (641)
+.++...+..+...|..-...+...-..|.++-.+-.
T Consensus 275 l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~ 311 (563)
T TIGR00634 275 VGNALTEVEEATRELQNYLDELEFDPERLNEIEERLA 311 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3333333333333333333333333344444444333
No 47
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=53.57 E-value=2.9e+02 Score=28.96 Aligned_cols=122 Identities=11% Similarity=0.152 Sum_probs=89.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHh
Q 006551 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRS 125 (641)
Q Consensus 46 ~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s 125 (641)
.+...+..|-+....+...++....+-.-.|--.|.-|-.++.+|..+-..=.++-.....|...|..++..+.+|-...
T Consensus 77 ~Ls~als~laev~~~i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~ 156 (234)
T cd07665 77 ALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWAN 156 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35666777777777888888888888888899999999999999999999999999999999999999998888883322
Q ss_pred hhHHHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhc
Q 006551 126 VTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER 173 (641)
Q Consensus 126 ~~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~ 173 (641)
.-.++-+.-.+|+++ ..+++. .+++|-..++++..=+...+.
T Consensus 157 -~~dK~~~a~~Ev~e~---e~k~~~--a~~~fe~is~~ik~El~rFe~ 198 (234)
T cd07665 157 -KPDKLQQAKDEIAEW---ESRVTQ--YERDFERISATVRKEVIRFEK 198 (234)
T ss_pred -CchHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 223444444444443 333332 344788888777766666655
No 48
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=52.99 E-value=2.6e+02 Score=29.17 Aligned_cols=157 Identities=9% Similarity=0.159 Sum_probs=0.0
Q ss_pred hhhCCCCCCchhHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006551 25 VSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDL 104 (641)
Q Consensus 25 ~eW~~~~Fd~l~~vL~lLss~~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L 104 (641)
++|+ .+....+..|+.+.+.+.+++..+|..| .+...+++.|+..+..++.+... ..|
T Consensus 21 D~~F----------------~~~k~yi~~Le~~Lk~l~k~~~~lv~~r-kela~~~~efa~s~~~L~~~E~~-----~~l 78 (234)
T cd07664 21 DAWF----------------EEKQQQFENLDQQLRKLHASVESLVCHR-KELSANTAAFAKSAAMLGNSEDH-----TAL 78 (234)
T ss_pred cHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCccc-----chH
Q ss_pred HHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhccCCC-------
Q 006551 105 AEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQ------- 177 (641)
Q Consensus 105 ~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~~eL~------- 177 (641)
..+=..|....+.+++++.+... .+++..-+.|++-..+=.-|...+.++. .|.+-..++...+.+....
T Consensus 79 s~~l~~laev~~ki~~~~~~qa~-~d~~~l~e~L~eYiR~i~svK~~f~~R~--k~~~~~~~a~~~L~kkr~~~~Kl~~~ 155 (234)
T cd07664 79 SRALSQLAEVEEKIDQLHQDQAF-ADFYLFSELLGDYIRLIAAVKGVFDQRM--KCWQKWQDAQVTLQKKREAEAKLQYA 155 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred -----------CCCchHHHHHHHHHhHHHHHHHHHHHHHH
Q 006551 178 -----------TVGALQDVRSELTKLRGVLFYKVLEDLHA 206 (641)
Q Consensus 178 -----------~I~AL~dLRs~L~~qe~~L~d~LvEELh~ 206 (641)
.|..+..=..+....-..+-+.+-.||.+
T Consensus 156 ~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~r 195 (234)
T cd07664 156 NKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGR 195 (234)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 49
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=52.57 E-value=2.9e+02 Score=28.77 Aligned_cols=141 Identities=13% Similarity=0.113 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCcHHHHHHHH
Q 006551 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRL----GTRNKQLHQLWY 123 (641)
Q Consensus 48 E~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L----~~rr~eLk~Lw~ 123 (641)
+.++..|....+.+......+...--+-.+.+-.++..........+.-...++.-+..+...= .....+|.+.
T Consensus 51 e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~-- 128 (264)
T PF06008_consen 51 EKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRA-- 128 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHH--
Confidence 4445555555555555555555444444444444454444444444444444443333333221 1123333332
Q ss_pred HhhhHHHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhccCCCCCCch-HHHHHHHHHhHHHHHH
Q 006551 124 RSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGAL-QDVRSELTKLRGVLFY 198 (641)
Q Consensus 124 ~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~~eL~~I~AL-~dLRs~L~~qe~~L~d 198 (641)
++++-.+|+.|..- --.-..-.++...-+|.+||.+....+.+ ....-.+| ..++..|......|.|
T Consensus 129 ----l~ea~~mL~emr~r---~f~~~~~~Ae~El~~A~~LL~~v~~~~~~-~~~~~~~l~~~i~~~L~~~~~kL~D 196 (264)
T PF06008_consen 129 ----LAEAQRMLEEMRKR---DFTPQRQNAEDELKEAEDLLSRVQKWFQK-PQQENESLAEAIRDDLNDYNAKLQD 196 (264)
T ss_pred ----HHHHHHHHHHHHhc---cchhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555443 24444567777888999999888888766 44444555 6788888877777654
No 50
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=52.32 E-value=3e+02 Score=28.75 Aligned_cols=124 Identities=18% Similarity=0.218 Sum_probs=90.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CcHHHHHHH
Q 006551 45 KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYS-QILRLFSESAESIKELKVDLAEAKRRLGT-RNKQLHQLW 122 (641)
Q Consensus 45 ~~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs-~I~~~IseSqe~I~~lK~~L~~aK~~L~~-rr~eLk~Lw 122 (641)
++....+..+=+....+.......+..=.+.|...+.+|. .-+..|+..+.++..-|=.+..||..+.. .+++|+.-.
T Consensus 84 S~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~dik~i~k~RKkLe~rRLd~D~~K~r~~k~~eeElr~A~ 163 (223)
T cd07613 84 CNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQAL 163 (223)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCCCcHHHHHHHH
Confidence 3556777777788888888888888888899999999976 55678899999999999999999999875 477887775
Q ss_pred HHhhh-----HHHHHHHHHH-HHHHhcchHHHHHHHhccCHHHHHHHHHHHHHH
Q 006551 123 YRSVT-----LRHIISLLDQ-IEGIAKVPARIEKLIAGKQYYAAVQLHAQSALM 170 (641)
Q Consensus 123 ~~s~~-----~k~mL~iLd~-IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~l 170 (641)
.+-.+ ...|..+|+. ++.+++.-+-|++-+. -|-.|.++|.+-..-
T Consensus 164 ~kFees~E~a~~~M~n~l~~e~e~~~~L~~fveAQl~--Yh~qa~eiL~~l~~~ 215 (223)
T cd07613 164 EKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLE--YHKQATQILQQVTVK 215 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 55444 3445668877 8777766666665553 334455554443333
No 51
>PHA02562 46 endonuclease subunit; Provisional
Probab=52.32 E-value=2e+02 Score=32.74 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=6.6
Q ss_pred chHHHHHHHHHhHHHH
Q 006551 181 ALQDVRSELTKLRGVL 196 (641)
Q Consensus 181 AL~dLRs~L~~qe~~L 196 (641)
.|.+.+.+|+.+.+.|
T Consensus 303 ~l~d~i~~l~~~l~~l 318 (562)
T PHA02562 303 KIKDKLKELQHSLEKL 318 (562)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 52
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=52.10 E-value=2.6e+02 Score=28.01 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH
Q 006551 52 QILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAES 96 (641)
Q Consensus 52 ~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~ 96 (641)
..|+.....+.+.+..+|. |.++...+++.|+.....++.+...
T Consensus 34 ~~le~~Lk~l~~~~~~l~~-~~~~l~~~~~e~~~~~~~la~~E~~ 77 (236)
T PF09325_consen 34 DKLEEQLKKLYKSLERLVK-RRQELASALAEFGSSFSQLAKSEEE 77 (236)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcccCC
Confidence 4455555555555555544 4577888888888888877776655
No 53
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=52.08 E-value=1.5e+02 Score=30.02 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=17.3
Q ss_pred CCCCCCCCCCCChHHHHHHHHHhH
Q 006551 1 MDIFDGLPISPEKAYLREELARIE 24 (641)
Q Consensus 1 ~~~~~~~p~p~d~~~l~evL~~I~ 24 (641)
|.+|-..||.||...|.+--..+.
T Consensus 18 mevfk~vPQ~PHF~pL~~~~e~~R 41 (190)
T PF05266_consen 18 MEVFKKVPQSPHFSPLQEFKEELR 41 (190)
T ss_pred HHHHHcCCCCCCChhhhcCcHHhh
Confidence 456788999999988875544444
No 54
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.14 E-value=1.6e+02 Score=35.42 Aligned_cols=153 Identities=15% Similarity=0.203 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH-------hhhHHHH
Q 006551 59 DIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYR-------SVTLRHI 131 (641)
Q Consensus 59 ~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~-------s~~~k~m 131 (641)
+.+...|+.+=-++-|..-.|=....++++.|..+-..+..+-+.|..+...|+.-|+++...-.+ +..-+.+
T Consensus 196 E~L~reLq~LdgANiqsilaSE~~Vn~ll~~ldaAl~~vd~~e~~Ld~yediL~hvre~iE~Ieekn~lie~~n~Nn~kL 275 (867)
T KOG2148|consen 196 ERLKRELQALDAANIQSILASEPLVNELLNGLDAALNEVDDMEEWLDSYEDILRHVREDIESIEEKNNLIEMQNVNNKKL 275 (867)
T ss_pred HHHHHHHHhhhcccHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhccchHHH
Confidence 344455555555566666666666777888888888888888888888888887777666554322 2222333
Q ss_pred HHHHHH-HHHHhcchHHHHHHHhccCHHHHH---HHHH---HHHHHHhccCCC----CCCchHHHHHHHHHhHHHHHHHH
Q 006551 132 ISLLDQ-IEGIAKVPARIEKLIAGKQYYAAV---QLHA---QSALMLEREGLQ----TVGALQDVRSELTKLRGVLFYKV 200 (641)
Q Consensus 132 L~iLd~-IE~Lk~vP~kIE~lIseK~Yl~Av---~LL~---~s~~ll~~~eL~----~I~AL~dLRs~L~~qe~~L~d~L 200 (641)
++-|+. |+.|. +|..=-+-+.+.+|..|- +-+. +|+.-+..++|. .+.|.+|=|++|+..+.++-+.+
T Consensus 276 ~eEl~kvin~L~-vp~shi~aL~egdf~~a~~~ieact~aA~al~q~~~~~ldp~~l~m~Avkdqr~eleklk~~Fvrrl 354 (867)
T KOG2148|consen 276 IEELDKVINRLD-VPSSHIAALTEGDFDEADQGIEACTWAAKALRQLMNPNLDPIYLNMRAVKDQRAELEKLKATFVRRL 354 (867)
T ss_pred HHHHHHHHHhcc-CcHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 55555 888888888888887663 3333 333333334443 66789999999998888888777
Q ss_pred HHHHHHhHhcCC
Q 006551 201 LEDLHAHLYNRG 212 (641)
Q Consensus 201 vEELh~hLYlKs 212 (641)
.+=|.+..-.-+
T Consensus 355 ssfLnnlF~~l~ 366 (867)
T KOG2148|consen 355 SSFLNNLFASLG 366 (867)
T ss_pred HHHHHHHHHHhc
Confidence 776655443333
No 55
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=49.65 E-value=11 Score=41.93 Aligned_cols=38 Identities=26% Similarity=0.460 Sum_probs=32.1
Q ss_pred hhhhhhhhHHHHhhcccccccccceeeeeeecCCCchh
Q 006551 595 IYRPVLQFTDKVASMLPQKYSQLGIFVTCICMGNCGSL 632 (641)
Q Consensus 595 ~~rp~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (641)
+.-|.+-|-=...-++|..+.+.+++|+|.|+|.||+.
T Consensus 154 ~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~ 191 (371)
T KOG2718|consen 154 LIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNY 191 (371)
T ss_pred HHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhh
Confidence 44577888766677899999999999999999999874
No 56
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.31 E-value=2.8e+02 Score=33.87 Aligned_cols=125 Identities=15% Similarity=0.199 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHhHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHH
Q 006551 58 NDIIEEVVDEVVHAYHTGF----NKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIIS 133 (641)
Q Consensus 58 ~~~l~~~L~~vV~eH~q~F----N~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~ 133 (641)
++.+-..|+..+..|--+. |.-.+-|-..++.+..-+..++++|..+...+..|..-.. ++|.
T Consensus 46 ~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~~g~-------------eLiv 112 (800)
T KOG2176|consen 46 HKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQESGK-------------ELIV 112 (800)
T ss_pred cchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-------------HHHH
Confidence 3556677777777776554 3334444445555555555555555555555554433332 2233
Q ss_pred HHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHhHhcCCC
Q 006551 134 LLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGE 213 (641)
Q Consensus 134 iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~~eL~~I~AL~dLRs~L~~qe~~L~d~LvEELh~hLYlKs~ 213 (641)
.+ .+-++....+++..+|++++..|+..|+- -+.+++++.+++-----.-+|+| .++|++-.
T Consensus 113 ~~---------e~lv~~r~~~rnit~ai~~l~~Cl~vLEl--------~sK~~e~~s~kqyy~aLktle~l-E~~yL~~~ 174 (800)
T KOG2176|consen 113 KK---------EDLVRCRTQSRNITEAIELLTLCLPVLEL--------YSKLQEQMSEKQYYPALKTLESL-EKVYLPRV 174 (800)
T ss_pred HH---------HHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHhccHHHHHHHHHHH-HHHHHHhc
Confidence 33 33455566667777888888888877765 35566666655543333445666 56676643
No 57
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=48.28 E-value=2.4e+02 Score=31.66 Aligned_cols=60 Identities=12% Similarity=0.194 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 006551 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNY--SQILRLFSESAESIKELKVDLAEA 107 (641)
Q Consensus 48 E~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sY--s~I~~~IseSqe~I~~lK~~L~~a 107 (641)
.....+|++....+...++..+..+.+.+..--..+ ..-...+...++++..+++.|..+
T Consensus 263 ~e~~q~Ld~l~~rL~~a~~~~L~~~~~~L~~L~~rL~~~~P~~~l~~~~q~L~~l~~rL~~a 324 (438)
T PRK00286 263 AELLQRLQQLQQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQRA 324 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567777777777777777877777776655444 223344555666666666666544
No 58
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=46.35 E-value=3.4e+02 Score=28.69 Aligned_cols=89 Identities=13% Similarity=0.229 Sum_probs=64.2
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHH
Q 006551 69 VHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARI 148 (641)
Q Consensus 69 V~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kI 148 (641)
++.|-..+...|.....+...+.++...+..+=.++...-.-|..++.+|..+............
T Consensus 47 ln~~~~~l~~~l~~l~~v~~~~a~aapdL~~~l~~~~~~s~tL~~~~~~L~~lL~~~~~~a~~~~--------------- 111 (267)
T PF11887_consen 47 LNPRLPQLREDLRNLADVADTYADAAPDLLDALDNLTTTSRTLVDQRQQLDALLLSATGLADTGT--------------- 111 (267)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---------------
Confidence 45666777888888888888888888888888888888888888888888887766655433222
Q ss_pred HHHHh--ccCHHHHHHHHHHHHHHHhc
Q 006551 149 EKLIA--GKQYYAAVQLHAQSALMLER 173 (641)
Q Consensus 149 E~lIs--eK~Yl~Av~LL~~s~~ll~~ 173 (641)
.++. +.++..+++.|.....++.+
T Consensus 112 -~~l~~n~~~L~~~~~~L~p~~~lL~~ 137 (267)
T PF11887_consen 112 -DFLADNRDNLIRALDDLRPTTDLLAK 137 (267)
T ss_pred -HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 2222 23556677777777777766
No 59
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=44.81 E-value=1.9e+02 Score=30.66 Aligned_cols=78 Identities=15% Similarity=0.212 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHH-HHH
Q 006551 62 EEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQ-IEG 140 (641)
Q Consensus 62 ~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~-IE~ 140 (641)
-+.|+++|+..+-+|...=.-|++-...|+.... .|-...+.+..||.+-.+.+.+-+.||+ ++.
T Consensus 73 ~~~LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr--------------~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~ 138 (254)
T KOG2196|consen 73 YKTLEELINKWSLELEEQERVFLQQATQVNAWDR--------------TLIENGEKISGLYNEVVKVKLDQKRLDQELEF 138 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------------HHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4789999999999999999999988877777654 3455677888899988888888888876 777
Q ss_pred HhcchHHHHHHHh
Q 006551 141 IAKVPARIEKLIA 153 (641)
Q Consensus 141 Lk~vP~kIE~lIs 153 (641)
|.+...+||.++.
T Consensus 139 I~sqQ~ELE~~L~ 151 (254)
T KOG2196|consen 139 ILSQQQELEDLLD 151 (254)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887764
No 60
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=44.79 E-value=3.4e+02 Score=32.70 Aligned_cols=39 Identities=15% Similarity=0.194 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Q 006551 86 ILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYR 124 (641)
Q Consensus 86 I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~ 124 (641)
.++.+.+-+.++..++..+.+.....+.+.+.+++|..+
T Consensus 309 ~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~l~~~ 347 (726)
T PRK09841 309 VLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLEK 347 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHHHH
Confidence 444555556666666666666666666677777666554
No 61
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=44.70 E-value=3.6e+02 Score=27.57 Aligned_cols=152 Identities=13% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH--hh
Q 006551 49 GEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYR--SV 126 (641)
Q Consensus 49 ~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~--s~ 126 (641)
..+..|+.+...+-+.+..+|..| .+...+++.|+.-...++.+.. ...|..+=..++..-..+.++..+ ..
T Consensus 19 ~~i~~Le~~Lk~l~~~~e~lv~~r-~ela~~~~~f~~s~~~L~~~E~-----~~~Ls~al~~la~~~~ki~~~~~~qa~~ 92 (224)
T cd07623 19 QQIENLDQQLRKLHASVESLVNHR-KELALNTGSFAKSAAMLSNCEE-----HTSLSRALSQLAEVEEKIEQLHGEQADT 92 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccc-----chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHH-HHHHhcchHHHHHHHhcc-CHHHHHHHHHHHHHHHhccCCCC-----------CCchHHHHHHHHHhH
Q 006551 127 TLRHIISLLDQ-IEGIAKVPARIEKLIAGK-QYYAAVQLHAQSALMLEREGLQT-----------VGALQDVRSELTKLR 193 (641)
Q Consensus 127 ~~k~mL~iLd~-IE~Lk~vP~kIE~lIseK-~Yl~Av~LL~~s~~ll~~~eL~~-----------I~AL~dLRs~L~~qe 193 (641)
....+.+.|+. +.-+.+|++-+.....-- +|..|..-|......+.+....+ |.....--......-
T Consensus 93 d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~a~~~f 172 (224)
T cd07623 93 DFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEF 172 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 006551 194 GVLFYKVLEDLHA 206 (641)
Q Consensus 194 ~~L~d~LvEELh~ 206 (641)
..+-+.+-.||.+
T Consensus 173 e~is~~~k~El~r 185 (224)
T cd07623 173 EEISKTIKKEIER 185 (224)
T ss_pred HHHHHHHHHHHHH
No 62
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=43.76 E-value=2.1e+02 Score=26.72 Aligned_cols=78 Identities=14% Similarity=0.176 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHH-----HHH-----HHHHhcchHHH
Q 006551 82 NYSQILRLFSESAESIKELK---VDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISL-----LDQ-----IEGIAKVPARI 148 (641)
Q Consensus 82 sYs~I~~~IseSqe~I~~lK---~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~i-----Ld~-----IE~Lk~vP~kI 148 (641)
.|++++.-..++|.+++.+- ..+.-++...+-.+.++..+-.+...|..|-.. +.. -+++++..++|
T Consensus 4 af~~lQ~K~~dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~a~~s~leak~k~see~I 83 (114)
T KOG3501|consen 4 AFSQLQEKAVDTQQQLRTIMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKAAVRSHLEAKMKSSEEKI 83 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHHH
Confidence 47778888888888887655 445555666666666666665555555554333 222 35677777777
Q ss_pred HHHHhccCHHH
Q 006551 149 EKLIAGKQYYA 159 (641)
Q Consensus 149 E~lIseK~Yl~ 159 (641)
+++=.+|.|++
T Consensus 84 eaLqkkK~YlE 94 (114)
T KOG3501|consen 84 EALQKKKTYLE 94 (114)
T ss_pred HHHHHHHHHHH
Confidence 77777777754
No 63
>PRK14140 heat shock protein GrpE; Provisional
Probab=43.19 E-value=1.1e+02 Score=31.20 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHhc
Q 006551 128 LRHIISLLDQIEGIAK 143 (641)
Q Consensus 128 ~k~mL~iLd~IE~Lk~ 143 (641)
.+.+|.++|.++...+
T Consensus 90 ~~~LLpvlDnLerAl~ 105 (191)
T PRK14140 90 ASDLLPALDNFERALQ 105 (191)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4556666666655443
No 64
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=41.88 E-value=4.3e+02 Score=27.58 Aligned_cols=76 Identities=13% Similarity=0.235 Sum_probs=51.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH
Q 006551 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQ-ILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQL 121 (641)
Q Consensus 46 ~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~-I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~L 121 (641)
+....+...-+....+...=...+..=.+.|...+.++-. -+..|+..+.++..-|=.+..+|..+.....+|+.-
T Consensus 90 ~~G~aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~D~~K~r~~kae~elr~A 166 (220)
T cd07617 90 PYGKTLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISKERRLLQNRRLDLDACKARLKKAEHELRVA 166 (220)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3345555555555556555555555556778888887777 566888888888888888888888876654555544
No 65
>PRK09039 hypothetical protein; Validated
Probab=41.74 E-value=5.1e+02 Score=28.46 Aligned_cols=46 Identities=15% Similarity=0.105 Sum_probs=21.8
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006551 67 EVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLG 112 (641)
Q Consensus 67 ~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~ 112 (641)
.-...+-+.....-..|+.....+.--+.+|..||..|......|.
T Consensus 116 ~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~ 161 (343)
T PRK09039 116 GRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALD 161 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445444444554444455555555555555444444443
No 66
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=41.69 E-value=6.6e+02 Score=29.68 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=46.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHH-HHHHHhcchHHHHHHHh
Q 006551 75 GFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLD-QIEGIAKVPARIEKLIA 153 (641)
Q Consensus 75 ~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd-~IE~Lk~vP~kIE~lIs 153 (641)
+.|.-+.++.+=...+..+.+.-.++|+++.+=...+ .+.+..|+ +++.+..-=.+.+.+-+
T Consensus 126 ~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~-----------------Ge~~~~lEk~Le~i~~~l~qf~~lt~ 188 (570)
T COG4477 126 DLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQY-----------------GEAAPELEKKLENIEEELSQFVELTS 188 (570)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhh-----------------hhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444444444444444444444444444333333 33333332 34445555667888899
Q ss_pred ccCHHHHHHHHHHHHHHHh
Q 006551 154 GKQYYAAVQLHAQSALMLE 172 (641)
Q Consensus 154 eK~Yl~Av~LL~~s~~ll~ 172 (641)
+++|.+|.+.|.++-+.+.
T Consensus 189 ~Gd~ieA~evl~~~ee~~~ 207 (570)
T COG4477 189 SGDYIEAREVLEEAEEHMI 207 (570)
T ss_pred CCChhHHHHHHHHHHHHHH
Confidence 9999999999988876654
No 67
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=41.24 E-value=2.7e+02 Score=26.56 Aligned_cols=84 Identities=19% Similarity=0.182 Sum_probs=56.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHH---HH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHH
Q 006551 46 DREGEVQILKDQNDIIEEVVDEVVHAYHT---GF----NKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQL 118 (641)
Q Consensus 46 ~rE~e~~~Le~~~~~l~~~L~~vV~eH~q---~F----N~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eL 118 (641)
+.+..++.|+++..+.+..+++.-..|.. .. +.-=..|.+.+...+.....+..-++++...|..|..-+..|
T Consensus 23 pv~~al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L 102 (142)
T PF04048_consen 23 PVELALSLLDDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLL 102 (142)
T ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999998887776666666655532 22 222245666777788888888888888888888887766666
Q ss_pred HHHHHHhhhHHHHH
Q 006551 119 HQLWYRSVTLRHII 132 (641)
Q Consensus 119 k~Lw~~s~~~k~mL 132 (641)
..++-+++++.
T Consensus 103 ---~~~~~eL~~L~ 113 (142)
T PF04048_consen 103 ---GCRREELKELW 113 (142)
T ss_pred ---hcCCHHHHHHH
Confidence 33444444433
No 68
>KOG3745 consensus Exocyst subunit - Sec10p [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.24 E-value=4.1e+02 Score=32.45 Aligned_cols=141 Identities=11% Similarity=0.077 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CcHHHHHHHHHhhhHH
Q 006551 52 QILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGT--RNKQLHQLWYRSVTLR 129 (641)
Q Consensus 52 ~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~--rr~eLk~Lw~~s~~~k 129 (641)
+.++++....+..=..-|+..+..+..++-.|......+......+..+++.|+.+...-.. .+.+|.+.|.+-..-+
T Consensus 77 ~~~e~~~~~~q~s~~kkv~~lr~k~~~a~~l~~~ld~~~~~v~~~vv~lgq~Le~v~~~r~r~~~a~~lir~~~eF~s~~ 156 (763)
T KOG3745|consen 77 RMLEEQMSTEQNSYKKKVDKLREKNSTALLLFLQLDDNIFPVSYKVVHLGQQLETVIKPRSRAVDAQELIRYYNEFLSGG 156 (763)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccccccccccccHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccC
Confidence 44455555555555556666677777888888888888888888888888888777655311 1122222222221111
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHh
Q 006551 130 HIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAH 207 (641)
Q Consensus 130 ~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~~eL~~I~AL~dLRs~L~~qe~~L~d~LvEELh~h 207 (641)
+ .. ..+.++..+ -++-++|++++..=+.+.+..+.. -....+..++...+.|-..++||..+.
T Consensus 157 ~-~~---i~s~i~~~~--------~~k~leaa~~~~kLl~isnel~~~---~f~~tka~I~k~~~~lE~~lleeF~~~ 219 (763)
T KOG3745|consen 157 R-QY---INSDIFTSA--------FDKNLEAADRIKKLLLISNELPYG---KFSETKARIEKKYEVLEQNLLEEFNSA 219 (763)
T ss_pred c-hh---HHHHHhcCh--------hhhHHHHHHHHHHHHHHhccCCcc---hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 00 111111111 256789999999888888775554 788889999999999999999998653
No 69
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=41.19 E-value=5e+02 Score=33.45 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHh
Q 006551 84 SQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIA 153 (641)
Q Consensus 84 s~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIs 153 (641)
.+....+.++-+++..+++.|.++...+....++.++|-..+..+...|+.+.. ..+.+.++++.+..
T Consensus 528 q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e--~~~~~~d~l~~le~ 595 (1317)
T KOG0612|consen 528 QKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE--ENRDLEDKLSLLEE 595 (1317)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh--ccccHHHHHHHHHH
Confidence 555666777788888888888888888888888888888888877777765544 44444444444443
No 70
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=41.17 E-value=2.6e+02 Score=29.25 Aligned_cols=75 Identities=16% Similarity=0.267 Sum_probs=50.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHh
Q 006551 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRS 125 (641)
Q Consensus 46 ~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s 125 (641)
+.......|+.+.+.+.+.+..+|.. +.+...+++.|++.+..++.+-.. ..|..+=..|+...+.|.+++.+.
T Consensus 26 ~k~~~ie~LE~qLk~L~k~~~~lv~~-r~eLa~~~~eFa~s~~~L~~~E~~-----~~Ls~als~laev~~~i~~~~~~q 99 (234)
T cd07665 26 EKLQEVECEEQRLRKLHAVVETLVNH-RKELALNTALFAKSLAMLGSSEDN-----TALSRALSQLAEVEEKIEQLHQEQ 99 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccc-----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888888877764 588999999999999998888742 233344444444445555555544
Q ss_pred h
Q 006551 126 V 126 (641)
Q Consensus 126 ~ 126 (641)
.
T Consensus 100 a 100 (234)
T cd07665 100 A 100 (234)
T ss_pred H
Confidence 3
No 71
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=40.81 E-value=3.4e+02 Score=26.17 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=21.6
Q ss_pred HhccCHHHHHHHHHHHHHHHhccCCCCCCchHHHH
Q 006551 152 IAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVR 186 (641)
Q Consensus 152 IseK~Yl~Av~LL~~s~~ll~~~eL~~I~AL~dLR 186 (641)
-++++|..+++-+..........-+..+..++++.
T Consensus 123 k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 157 (191)
T cd07610 123 KADEEYREQVEKLNPAQSEYEEEKLNKIQAEQERE 157 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 55678888888887776666553444444444443
No 72
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=40.65 E-value=6.6e+02 Score=29.43 Aligned_cols=125 Identities=13% Similarity=0.182 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHH
Q 006551 52 QILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHI 131 (641)
Q Consensus 52 ~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~m 131 (641)
..|+++...+.+....+. +.++..-..|+.|...+.+..+++..+.+.....+..|..-+.+=++-..+-..++..
T Consensus 347 ~~l~~~l~~l~~~~~~~~----~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~ 422 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDLE----ERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQK 422 (560)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333332 3444455566666666666666666666666666555544433333333333333332
Q ss_pred HHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhccCCCCCCchH
Q 006551 132 ISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQ 183 (641)
Q Consensus 132 L~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~~eL~~I~AL~ 183 (641)
+....--=+=..+|.-=+.++. .|..|.+-+.+-...|+...+ ++..+.
T Consensus 423 l~~ikR~lek~nLPGlp~~y~~--~~~~~~~~i~~l~~~L~~~pi-nm~~v~ 471 (560)
T PF06160_consen 423 LREIKRRLEKSNLPGLPEDYLD--YFFDVSDEIEELSDELNQVPI-NMDEVN 471 (560)
T ss_pred HHHHHHHHHHcCCCCCCHHHHH--HHHHHHHHHHHHHHHHhcCCc-CHHHHH
Confidence 2222111111234444444444 577888888888888887444 344433
No 73
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=39.11 E-value=6.3e+02 Score=32.46 Aligned_cols=69 Identities=17% Similarity=0.357 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcH
Q 006551 50 EVQILKDQNDIIEEVVDEV------VHAYHTGFNKAIQN-------YSQILRLFSESAESIKELKVDLAEAKRRLGTRNK 116 (641)
Q Consensus 50 e~~~Le~~~~~l~~~L~~v------V~eH~q~FN~sI~s-------Ys~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~ 116 (641)
.+..+++....+++.|+.+ |.+|.......-.. -......+...+.++..+++.+..++..+..++.
T Consensus 772 ~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 851 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRK 851 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666544 44544444444443 4556666677777777777777777777666655
Q ss_pred HH
Q 006551 117 QL 118 (641)
Q Consensus 117 eL 118 (641)
+|
T Consensus 852 ~l 853 (1201)
T PF12128_consen 852 EL 853 (1201)
T ss_pred HH
Confidence 55
No 74
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.90 E-value=5.6e+02 Score=28.08 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=34.6
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHH
Q 006551 63 EVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWY 123 (641)
Q Consensus 63 ~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~ 123 (641)
..+.+.+..+...|+..|.+-.++...+.+-.+.+..+=.+|...-..+..+.+++.++..
T Consensus 165 ~~~~~~~~g~~~~l~~~l~~l~~~~~~ln~~~~~i~~~i~~l~~~~~~~~~~~~~l~~~~~ 225 (359)
T COG1463 165 NEAAAALAGTGPQLNALLDNLAQFTDALNARDGDIGALIANLNQLLDSLAAASDQLDRLLD 225 (359)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3444445555566666666666666666666666666655555555555555555554433
No 75
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=38.87 E-value=9.7e+02 Score=30.83 Aligned_cols=120 Identities=18% Similarity=0.142 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcc---------hHHHHHHHhc
Q 006551 84 SQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKV---------PARIEKLIAG 154 (641)
Q Consensus 84 s~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~v---------P~kIE~lIse 154 (641)
.++-..+.....++.++++.+.+..+.+..-+..+..+= +...+.-+-|.+|+...+. +.+...+-++
T Consensus 105 ~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~p---q~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae 181 (1109)
T PRK10929 105 DALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLP---QQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAE 181 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhch---hhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHH
Confidence 344444555555555555555555444433333333332 2225555666666654333 3333333334
Q ss_pred cCHHHHHHHHHHHHHHHhccCCCCCC---chHHHHHHHHHhHHHHHHHHHHHHHHhHhcCCC
Q 006551 155 KQYYAAVQLHAQSALMLEREGLQTVG---ALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGE 213 (641)
Q Consensus 155 K~Yl~Av~LL~~s~~ll~~~eL~~I~---AL~dLRs~L~~qe~~L~d~LvEELh~hLYlKs~ 213 (641)
..++.+.. .....++.+.. .|..+|.++..++....+..++.|++.+..|..
T Consensus 182 ~~~l~~~~-------~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~ 236 (1109)
T PRK10929 182 SAALKALV-------DELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQ 236 (1109)
T ss_pred HHHHHHHH-------HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332 22222333333 344567778888888889999999999988754
No 76
>PRK10884 SH3 domain-containing protein; Provisional
Probab=38.65 E-value=4e+02 Score=27.36 Aligned_cols=61 Identities=16% Similarity=0.235 Sum_probs=33.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006551 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGT 113 (641)
Q Consensus 46 ~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~ 113 (641)
+....+.+++.+.+.+...|+++-++.. ..-+.+.+.+.++.+.+.++++...+.+..|..
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~-------~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWN-------QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIV 150 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345557777777777777777654422 233334445555555555555555544444433
No 77
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=38.62 E-value=7.4e+02 Score=29.43 Aligned_cols=148 Identities=14% Similarity=0.189 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHH-
Q 006551 60 IIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQI- 138 (641)
Q Consensus 60 ~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~I- 138 (641)
.+++.+-..=.+-=++|......+..+.+.+..-++.+..+++.|..++..-..--.+..+|..+....+.=-++|+.+
T Consensus 24 ~iE~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~ 103 (618)
T PF06419_consen 24 DIEKRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFL 103 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443333344455666666666666666666667777777777666554443444445544444443333444433
Q ss_pred HHHhcchHHHHHHHhc-----cCH----HHHHHHHHHHHHHHhccCC-CCCCchHHHHHHHHHhHHHHHHHHHHHHHHh
Q 006551 139 EGIAKVPARIEKLIAG-----KQY----YAAVQLHAQSALMLEREGL-QTVGALQDVRSELTKLRGVLFYKVLEDLHAH 207 (641)
Q Consensus 139 E~Lk~vP~kIE~lIse-----K~Y----l~Av~LL~~s~~ll~~~eL-~~I~AL~dLRs~L~~qe~~L~d~LvEELh~h 207 (641)
+.-.=.|++++.+-+. ..| ..|.+.-.+|-.++..+.- .|+.-|..+-.+++.--+.||.-+..|+.+.
T Consensus 104 ~~f~Ls~~E~~~L~~~~~~v~~~FF~~L~r~~~I~~~c~~LL~~~~~~ag~~iM~~~~~~~e~a~erl~~w~q~e~~~l 182 (618)
T PF06419_consen 104 ERFTLSEEEEDALTSGEEPVDDEFFDALDRVQKIHEDCKILLSTENQRAGLEIMEQMSKYLERAYERLYRWVQRECRSL 182 (618)
T ss_pred HhCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2233334444444443 122 2333444455555543221 2444455555555555555666665555544
No 78
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=38.14 E-value=7.8e+02 Score=29.52 Aligned_cols=122 Identities=12% Similarity=0.115 Sum_probs=69.4
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-cHHHHHHHHHhh-hHHHHHHHHHHHHHHhcchH
Q 006551 69 VHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTR-NKQLHQLWYRSV-TLRHIISLLDQIEGIAKVPA 146 (641)
Q Consensus 69 V~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~r-r~eLk~Lw~~s~-~~k~mL~iLd~IE~Lk~vP~ 146 (641)
|...+...+-.+..+......|-..+.+|..+|++|..++...... .+++.++-.--. .=+.+.++...|+.++..-.
T Consensus 230 ~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~ 309 (629)
T KOG0963|consen 230 VAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLV 309 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566666666667777777777788999999998887554 344444433222 33444555566666655433
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHhHHHHHHHHHHHH
Q 006551 147 RIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDL 204 (641)
Q Consensus 147 kIE~lIseK~Yl~Av~LL~~s~~ll~~~eL~~I~AL~dLRs~L~~qe~~L~d~LvEEL 204 (641)
+... .+-.++.-+.+-++. -++.|..++..|+++ ..|+.|-.||
T Consensus 310 ~e~e-----~~~~qI~~le~~l~~-------~~~~leel~~kL~~~--sDYeeIK~EL 353 (629)
T KOG0963|consen 310 EERE-----KHKAQISALEKELKA-------KISELEELKEKLNSR--SDYEEIKKEL 353 (629)
T ss_pred HHHH-----HHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhh--ccHHHHHHHH
Confidence 2211 112222222222222 344677777777776 6677777777
No 79
>KOG2216 consensus Conserved coiled/coiled coil protein [Function unknown]
Probab=37.58 E-value=4.6e+02 Score=28.49 Aligned_cols=137 Identities=20% Similarity=0.236 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhh
Q 006551 53 ILKDQNDIIEEVVDEVVHAYHTGF-----NKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT 127 (641)
Q Consensus 53 ~Le~~~~~l~~~L~~vV~eH~q~F-----N~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~ 127 (641)
-++.+++.+++++.++-+...++= ...+-.|-.....-..+..+...+|...+.+|..+...+-+|..|-.+-+.
T Consensus 15 il~t~f~qlqk~ia~ikeak~rg~~~e~~~q~~~~fv~Lr~aNR~~~~q~~~~r~~t~e~k~~vD~~~LQLqnl~yev~H 94 (303)
T KOG2216|consen 15 ILNTQFDQLQKAIAGIKEAKSRGPIEENRIQTMSKFVLLRHANRLLHAQLKKARKETEEAKNKVDAKHLQLQNLLYEVQH 94 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCHhhhhHHHHHHHHHH
Confidence 344555555555555544444333 444445555555566677788899999999999999999999999888887
Q ss_pred HHHHHH-------------HHHHHHHHhcchHHHHH--HHhccCHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHh
Q 006551 128 LRHIIS-------------LLDQIEGIAKVPARIEK--LIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKL 192 (641)
Q Consensus 128 ~k~mL~-------------iLd~IE~Lk~vP~kIE~--lIseK~Yl~Av~LL~~s~~ll~~~eL~~I~AL~dLRs~L~~q 192 (641)
++..|. +...+|..+..|+.+.. .-++..+. .-+..++= +|..=..|..++++|..+
T Consensus 95 lkkeI~~c~~fks~~~el~Lvs~eEf~kEaP~i~a~ae~sssn~H~-------q~larL~~-ElkQRk~L~~~~~eLl~~ 166 (303)
T KOG2216|consen 95 LKKEIKRCLDFKSKYTELELVSEEEFNKEAPEIIADAEESSSNPHK-------QMLARLDF-ELKQRKELSKLYQELLSR 166 (303)
T ss_pred HHHHHHHHHHhhccCcccccccHHHHhhhCCcchhhhHhhcCCcHH-------HHHHHhHH-HHHHHHHHHHHHHHHHHH
Confidence 776654 44456667777766654 44433332 22222322 555566788889999988
Q ss_pred HHHHH
Q 006551 193 RGVLF 197 (641)
Q Consensus 193 e~~L~ 197 (641)
+..|-
T Consensus 167 K~~Ll 171 (303)
T KOG2216|consen 167 KAALL 171 (303)
T ss_pred HHHHH
Confidence 88873
No 80
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=37.51 E-value=7.7e+02 Score=29.27 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=14.5
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHh
Q 006551 181 ALQDVRSELTKLRGVLFYKVLEDLHAH 207 (641)
Q Consensus 181 AL~dLRs~L~~qe~~L~d~LvEELh~h 207 (641)
....++..|......+....+..|...
T Consensus 484 ~~~~~~~~l~~~~~~l~~~~~~~le~~ 510 (650)
T TIGR03185 484 IADKAKKTLKEFREKLLERKLQQLEEE 510 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666665555555554433
No 81
>PRK11281 hypothetical protein; Provisional
Probab=37.49 E-value=5.2e+02 Score=33.11 Aligned_cols=59 Identities=19% Similarity=0.147 Sum_probs=42.0
Q ss_pred cCHHHHHHHHHHHHHHHhccCCCCCCchHHH---HHHHHHhHHHHHHHHHHHHHHhHhcCCC
Q 006551 155 KQYYAAVQLHAQSALMLEREGLQTVGALQDV---RSELTKLRGVLFYKVLEDLHAHLYNRGE 213 (641)
Q Consensus 155 K~Yl~Av~LL~~s~~ll~~~eL~~I~AL~dL---Rs~L~~qe~~L~d~LvEELh~hLYlKs~ 213 (641)
+.-++|-..+.++....++.+|.+...+++| |.++..++....+..++.|++.+..|..
T Consensus 194 ~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~ 255 (1113)
T PRK11281 194 RVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRL 255 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666678777776665 5567777888888889999999988643
No 82
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=37.24 E-value=4.4e+02 Score=26.44 Aligned_cols=72 Identities=4% Similarity=0.080 Sum_probs=54.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHH
Q 006551 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQ 117 (641)
Q Consensus 46 ~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~e 117 (641)
++...+..+-+..+.+...++.+.+.+...|...|.-|......|...-..=.+.......+...|..++.+
T Consensus 67 ~L~~~L~~~~~~~~~~~~~~~~l~~~~~~~f~e~Lkey~~y~~svk~~l~~R~~~q~~~e~~~e~L~~k~~~ 138 (200)
T cd07624 67 ELAPLLEGVSSAVERCTAALEVLLSDHEFVFLPPLREYLLYSDAVKDVLKRRDQFQIEYELSVEELNKKRLE 138 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777778888888888888888999999999888888877666666666666666666655544
No 83
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=36.57 E-value=7.6e+02 Score=28.92 Aligned_cols=107 Identities=12% Similarity=0.122 Sum_probs=57.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHh
Q 006551 74 TGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIA 153 (641)
Q Consensus 74 q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIs 153 (641)
+.++.....|+.+...+.+..+++..+++.-.+-+..|..-+.+-.+.-..-..++..+.-+...=+-..+|.--+.++.
T Consensus 369 ~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~ 448 (569)
T PRK04778 369 ERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLE 448 (569)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHH
Confidence 44555555577777777777777777777666666666554444444444444444444333332223334443333332
Q ss_pred ccCHHHHHHHHHHHHHHHhccCCCCCCchH
Q 006551 154 GKQYYAAVQLHAQSALMLEREGLQTVGALQ 183 (641)
Q Consensus 154 eK~Yl~Av~LL~~s~~ll~~~eL~~I~AL~ 183 (641)
.|..+.+-+.+-...++. .=.++.|+.
T Consensus 449 --~~~~~~~~i~~l~~~L~~-g~VNm~ai~ 475 (569)
T PRK04778 449 --MFFEVSDEIEALAEELEE-KPINMEAVN 475 (569)
T ss_pred --HHHHHHHHHHHHHHHhcc-CCCCHHHHH
Confidence 244556666666666666 455666655
No 84
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.52 E-value=7.9e+02 Score=29.09 Aligned_cols=120 Identities=17% Similarity=0.238 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh----HHHH-HHH---HH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--
Q 006551 48 EGEVQILKDQNDIIEEVVDEVVHAY----HTGF-NKA---IQ---NYSQILRLFSESAESIKELKVDLAEAKRRLGTR-- 114 (641)
Q Consensus 48 E~e~~~Le~~~~~l~~~L~~vV~eH----~q~F-N~s---I~---sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~r-- 114 (641)
+..++.|+.....++.+++.|-++- .+.| ..+ |. .|-.++.+|+--..-+.++.+....-......+
T Consensus 300 ~~K~~llEkala~~edaI~~v~D~~~~d~~~~~~t~~~q~i~aYL~Y~~l~~tisR~~~~~~n~~~~~ls~~~~~~~k~r 379 (593)
T KOG2460|consen 300 DQKLSLLEKALARCEDAIQNVRDEIKIDEKQRNSTLNGQIILAYLKYNKLLTTISRNEDAFTNLWNQWLSQQTSDPKKLR 379 (593)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccchHhhhhhhcchHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHhCcccccccC
Confidence 4455677777777777776665421 1221 111 12 244555555544333444443333322222222
Q ss_pred cHHHHHHHHHhhhHHHHHHHHHHHHHHhc------chHH----------------HHHHHhccCHHHHHHHHHHHHHHHh
Q 006551 115 NKQLHQLWYRSVTLRHIISLLDQIEGIAK------VPAR----------------IEKLIAGKQYYAAVQLHAQSALMLE 172 (641)
Q Consensus 115 r~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~------vP~k----------------IE~lIseK~Yl~Av~LL~~s~~ll~ 172 (641)
-.+|.+| |+-+|+.|..|.+|-- ...+ -..|.+.++|-+|+-|.+++..-++
T Consensus 380 pqdl~RL------Yd~iiknl~e~~elPG~~~D~~l~sqle~~~~~fkafRC~~iA~sY~a~~K~~EAlALy~Ra~sylq 453 (593)
T KOG2460|consen 380 PQDLERL------YDSIIKNLSEIMELPGLESDKELQSQLELKKLYFKAFRCFYIAVSYQAKKKYSEALALYVRAYSYLQ 453 (593)
T ss_pred HHHHHHH------HHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444 4445555544433311 1122 2467889999999999999999886
Q ss_pred c
Q 006551 173 R 173 (641)
Q Consensus 173 ~ 173 (641)
.
T Consensus 454 e 454 (593)
T KOG2460|consen 454 E 454 (593)
T ss_pred H
Confidence 5
No 85
>PRK11519 tyrosine kinase; Provisional
Probab=36.07 E-value=7.9e+02 Score=29.64 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH
Q 006551 86 ILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQL 121 (641)
Q Consensus 86 I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~L 121 (641)
.++.+.+-+.++.+++..+.+.....+.+.+.++.|
T Consensus 309 ~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v~~l 344 (719)
T PRK11519 309 VLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRTL 344 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHH
Confidence 344445555555555555555555555555555554
No 86
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=35.47 E-value=5.2e+02 Score=26.71 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=60.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhh---HHHHHHHHHHHHHHhcchHHHHH
Q 006551 74 TGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT---LRHIISLLDQIEGIAKVPARIEK 150 (641)
Q Consensus 74 q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~---~k~mL~iLd~IE~Lk~vP~kIE~ 150 (641)
+-+++-++.+-.....+.+..-++...+..|...+..|+..+..+.+--..++. +..+-...++++.|+.+|+.+++
T Consensus 24 ~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et 103 (204)
T COG5491 24 QVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFET 103 (204)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777777777799999999999999999987777655444443 45566778889999999999888
Q ss_pred HH
Q 006551 151 LI 152 (641)
Q Consensus 151 lI 152 (641)
..
T Consensus 104 ~~ 105 (204)
T COG5491 104 QF 105 (204)
T ss_pred HH
Confidence 76
No 87
>PF08393 DHC_N2: Dynein heavy chain, N-terminal region 2; InterPro: IPR013602 Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. Dyneins generally contain one to three heavy chains, where each heavy chain consists of a C-terminal globular head, a flexible microtubule-binding stalk, and a flexible N-terminal tail known as the cargo-binding domain []. The two categories of dyneins are the axonemal dyneins, which produce the bending motions that propagate along cilia and flagella, and the cytosolic dyneins, which drive a variety of fundamental cellular processes including nuclear migration, organisation of the mitotic spindle, chromosome separation during mitosis, and the positioning and function of many intracellular organelles. Cytoplasmic dyneins contain several accessory subunits ranging from light to intermediate chains. This entry represents a region found C-terminal to the dynein heavy chain N-terminal region 1 (IPR013594 from INTERPRO) in many members of this family. No functions seem to have been attributed specifically to this region. ; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=35.38 E-value=1.9e+02 Score=31.63 Aligned_cols=180 Identities=13% Similarity=0.186 Sum_probs=85.9
Q ss_pred HHHHHHHHHhHhhhCCCCCCchhHHHh-hcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 006551 14 AYLREELARIEVSWVAPRFDSLPHVVH-ILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSE 92 (641)
Q Consensus 14 ~~l~evL~~I~~eW~~~~Fd~l~~vL~-lLss~~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~Ise 92 (641)
..++.-|+.|...|....|.-.++--. ..--.+.+.-...|++....++..+. +.|+..|-..+.....-+..+.+
T Consensus 142 ~~ie~~L~~i~~~W~~~~f~~~~~~~~~~~il~~~~~i~~~led~~~~L~~m~~---S~~~~~~~~~v~~w~~~L~~~~~ 218 (408)
T PF08393_consen 142 YKIEQSLEKIKEEWKNMEFEFVPYKDKDVFILKNWDEIIQQLEDHLLTLQSMKS---SPFVKPFRDEVEEWEKKLNNIQE 218 (408)
T ss_dssp HHHHHHHHHHHHHHCC-B-EEEEETTT-CEEEE-CHHHHHHHHHHHHHHHHTCS---STTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhceeeeeccccchhheecchHHHHHHHHHHHHHHhcccc---cchhHHHHHHHHHHHHHHHHHHH
Confidence 357888999999999876666555442 11111234444555555544433221 35555666666666665555555
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHH-HHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHH
Q 006551 93 SAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQ-IEGIAKVPARIEKLIAGKQYYAAVQLHAQSALML 171 (641)
Q Consensus 93 Sqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~-IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll 171 (641)
.-+....+-+.-..-...+.+. +-=++|-.++..+..+-..... +..+.+.|.- -.............-+.+.+..+
T Consensus 219 il~~w~~~Q~~W~yL~~if~~~-di~~~lp~e~~~F~~i~~~~~~i~~~~~~~~~v-~~~~~~~~~~~~l~~~~~~l~~i 296 (408)
T PF08393_consen 219 ILEEWMEVQRKWMYLEPIFSSS-DIKKQLPKEAKKFSSIDKEWRSIMKRAQKDPNV-LSVCSNPDLLEKLESINESLEKI 296 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSC-CHCCCTHHHHHHHHHHHHHHHHHHHHHHCT-CC-HHHCCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHcChHHHHHHHHHHhCcch-hHHhhHhhHHHHHHHHHHHHHHH
Confidence 5555555555554444444443 1113333334433333322222 2223333322 22222334444444444444444
Q ss_pred hccCCCCCCchHHHHHHHHHhHHH---HHHHHHHHHHHhH
Q 006551 172 EREGLQTVGALQDVRSELTKLRGV---LFYKVLEDLHAHL 208 (641)
Q Consensus 172 ~~~eL~~I~AL~dLRs~L~~qe~~---L~d~LvEELh~hL 208 (641)
. +.|..||+.++.. +|=.==+||-+.+
T Consensus 297 ~----------k~L~~~Le~kR~~FPRfyFlsd~eLl~il 326 (408)
T PF08393_consen 297 Q----------KSLNDYLESKREAFPRFYFLSDDELLEIL 326 (408)
T ss_dssp H----------HHHHHHHHHHHHHSCCHHHC-HHHHHHHH
T ss_pred H----------HHHhHHHHHHHhhccceeecCcHHHHHHH
Confidence 3 3677777777764 3333345554444
No 88
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=35.21 E-value=6e+02 Score=28.74 Aligned_cols=60 Identities=12% Similarity=0.138 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 006551 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYS--QILRLFSESAESIKELKVDLAEA 107 (641)
Q Consensus 48 E~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs--~I~~~IseSqe~I~~lK~~L~~a 107 (641)
....++|++....+..+++..+..+.+.++..-..+. .-...+...++++..+++.|..+
T Consensus 258 ~el~qrLd~l~~RL~~am~~~L~~~r~rL~~L~~RL~~~~P~~~L~~~~qrLd~L~~RL~~a 319 (432)
T TIGR00237 258 DELLQRLDGFNVRLHRAFDTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRKQAA 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444667777777777777777777777766555443 22234555666666666666554
No 89
>PF13514 AAA_27: AAA domain
Probab=34.63 E-value=3.1e+02 Score=34.71 Aligned_cols=151 Identities=18% Similarity=0.250 Sum_probs=93.6
Q ss_pred CCCCCCCChHHHHHHHHHhHhhhCCC--CCCchhHHHh---hcCCC-chhHH-------HHHHHHHHHHHHHHHHHHH--
Q 006551 5 DGLPISPEKAYLREELARIEVSWVAP--RFDSLPHVVH---ILTSK-DREGE-------VQILKDQNDIIEEVVDEVV-- 69 (641)
Q Consensus 5 ~~~p~p~d~~~l~evL~~I~~eW~~~--~Fd~l~~vL~---lLss~-~rE~e-------~~~Le~~~~~l~~~L~~vV-- 69 (641)
||.|.| ...|...|.-|+.+-+.. .||--...-. ++... +.... +..|-+..+.+++..+.+.
T Consensus 68 ~g~~~~--e~~L~~~Lgg~dr~~f~~iF~~d~~~L~~gG~~l~~~~gdlg~~Lf~agaG~~~l~~~~~~L~~ea~~Lfkp 145 (1111)
T PF13514_consen 68 DGQPLP--EDWLAALLGGLDRETFEAIFSFDHEELREGGESLLEAEGDLGQLLFSAGAGLGSLSQVLKQLDKEADELFKP 145 (1111)
T ss_pred CCCCCC--HHHHHHHHcCCCHHHHHHHHcCCHHHHHHHHHHHHhhhhHHHHHHHHhccccccHHHHHHHHHHHHHHhhCC
Confidence 566544 566777788787776642 2222221111 11111 00000 1113333445555555554
Q ss_pred HHhHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcchH
Q 006551 70 HAYHTGFNKAIQNYSQILRLFSESAESIK---ELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPA 146 (641)
Q Consensus 70 ~eH~q~FN~sI~sYs~I~~~IseSqe~I~---~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~ 146 (641)
......||..+..|..+...|.+...+.. .+++.+..+...+..-+.+++++..+...+..++..+..+.+++....
T Consensus 146 rg~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~ 225 (1111)
T PF13514_consen 146 RGRKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEA 225 (1111)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 23445788888888888888777766554 677778888888888888888888888888888888888888888888
Q ss_pred HHHHHHhccCH
Q 006551 147 RIEKLIAGKQY 157 (641)
Q Consensus 147 kIE~lIseK~Y 157 (641)
+++.+-.-..|
T Consensus 226 ~l~~l~~~~~~ 236 (1111)
T PF13514_consen 226 ELAELGEVPDF 236 (1111)
T ss_pred HHHhcCCcCCC
Confidence 77766444444
No 90
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=34.62 E-value=6.2e+02 Score=27.38 Aligned_cols=135 Identities=17% Similarity=0.208 Sum_probs=86.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Q 006551 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFS-ESAESIKELKVDLAEAKRRLGTRNKQLHQLWYR 124 (641)
Q Consensus 46 ~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~Is-eSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~ 124 (641)
....++..|.+....++..+..++ +.|+....-+..-..+...+. .-++.+..+|..|.+.+..|..++.+|.+|-.+
T Consensus 160 ~L~~D~~~L~~~~~~l~~~~~~l~-~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~e 238 (325)
T PF08317_consen 160 LLQEDYAKLDKQLEQLDELLPKLR-ERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEE 238 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777666665555544 455888888888888888777 447888899999999999999999999888887
Q ss_pred hhhHHHHHHHHHH-HHHHhcchHHHHHHHh-ccCH-HHHHHHHHHHHHHHhccCCCCCCc
Q 006551 125 SVTLRHIISLLDQ-IEGIAKVPARIEKLIA-GKQY-YAAVQLHAQSALMLEREGLQTVGA 181 (641)
Q Consensus 125 s~~~k~mL~iLd~-IE~Lk~vP~kIE~lIs-eK~Y-l~Av~LL~~s~~ll~~~eL~~I~A 181 (641)
-...+.-++-+.. +.+++.-=..++.... .+.| ..-+.-|...+..|..---|.+-.
T Consensus 239 l~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~gw~~~~ 298 (325)
T PF08317_consen 239 LEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLTGWKIVS 298 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHCcEEEE
Confidence 7776665554432 2222222222332222 2333 334555666777776544444433
No 91
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=34.43 E-value=5.1e+02 Score=26.31 Aligned_cols=95 Identities=9% Similarity=0.169 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------HhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHH
Q 006551 51 VQILKDQNDIIEEVVDEVVH----------AYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQ 120 (641)
Q Consensus 51 ~~~Le~~~~~l~~~L~~vV~----------eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~ 120 (641)
..+|......+...|+++.. -|-.+.++.-++-+.+-..|..-.+.|+.+|+.|..++.........|++
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~ 93 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKD 93 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444 33344555555557788888888888888888888888887777777775
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhcch
Q 006551 121 LWYRSVTLRHIISLLDQIEGIAKVP 145 (641)
Q Consensus 121 Lw~~s~~~k~mL~iLd~IE~Lk~vP 145 (641)
.-.+-...+.-++-|.++-.=+..|
T Consensus 94 ~~~el~k~~~~l~~L~~L~~dknL~ 118 (194)
T PF15619_consen 94 KDEELLKTKDELKHLKKLSEDKNLA 118 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCch
Confidence 5444444444444444443333333
No 92
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=34.27 E-value=4.9e+02 Score=26.08 Aligned_cols=16 Identities=6% Similarity=0.133 Sum_probs=11.3
Q ss_pred hHHHHHHHHHhHhhhC
Q 006551 13 KAYLREELARIEVSWV 28 (641)
Q Consensus 13 ~~~l~evL~~I~~eW~ 28 (641)
...-+.+++.+...|.
T Consensus 3 t~~~~~v~da~w~~~~ 18 (165)
T PF09602_consen 3 TKPYENVMDAFWKQWS 18 (165)
T ss_pred cchHHHHHHHHHHHHH
Confidence 3445667888888887
No 93
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=34.20 E-value=7.2e+02 Score=28.32 Aligned_cols=196 Identities=13% Similarity=0.083 Sum_probs=0.0
Q ss_pred CCCCCCCCChHHHHHHHHHhHhhhCC---CCCCchhHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 006551 4 FDGLPISPEKAYLREELARIEVSWVA---PRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAI 80 (641)
Q Consensus 4 ~~~~p~p~d~~~l~evL~~I~~eW~~---~~Fd~l~~vL~lLss~~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI 80 (641)
|.|.=-......++++.+.++..|.. .++||+++--. ..-+.++..+++....++..|..++....+.- .+.
T Consensus 254 ~~g~~g~~~~~~~~~i~~~~~~~~~~~~~~~yd~ld~~~~----~~w~~~~~~f~~~i~~lE~~l~~~l~~~f~~~-~s~ 328 (579)
T PF08385_consen 254 FGGLRGKELSEGIDEIEEEFNEAYEPFKSLDYDILDVSNE----EEWERDFSEFRERIEDLERRLANILRQAFDDC-SSP 328 (579)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCCCcch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-CCH
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-cHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHhccCHHH
Q 006551 81 QNYSQILRLFSESAESIKELKVDLAEAKRRLGTR-NKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYA 159 (641)
Q Consensus 81 ~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~r-r~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~ 159 (641)
...=.++..+..-- .-..+|..|......|-.. ..+|..+-..-.+.+. ..-.+.....+..|.-.-..+--+....
T Consensus 329 ~~~~~ll~~f~~L~-~Rp~I~~~l~~~~~~ll~~~~~ei~~~~~~f~~~~~-~~~~~~~~~~~~~Ppvag~i~w~r~L~~ 406 (579)
T PF08385_consen 329 EEAFRLLQKFKSLL-NRPRIRKALQEKYEQLLQQFKEEIDQLKKIFDNQKE-KSETDNPPLPRNLPPVAGAIIWARQLER 406 (579)
T ss_pred HHHHHHHHHHHhHh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccccccccccCCcHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHH
Q 006551 160 AVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHA 206 (641)
Q Consensus 160 Av~LL~~s~~ll~~~eL~~I~AL~dLRs~L~~qe~~L~d~LvEELh~ 206 (641)
=++.....++.+.++++..-+.-+.++.......+.|-+...+-..+
T Consensus 407 ri~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~e~~~~~~ 453 (579)
T PF08385_consen 407 RIKEPMQRLKSLLGPDWLDSPEGKELKQKYNELLKKLDEYEKEIFEE 453 (579)
T ss_pred HHhHHHHHHHHhccchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
No 94
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=34.07 E-value=3.6e+02 Score=24.51 Aligned_cols=71 Identities=11% Similarity=0.137 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHH
Q 006551 99 ELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSAL 169 (641)
Q Consensus 99 ~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ 169 (641)
..++.+.+....+...-..+.++.....+...+-++-+..+.....-+++-.++..++..+|..++.....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 149 (181)
T PF12729_consen 79 EIEKEIDEARAEIDEALEEYEKLILSPEEKQLLEEFKEAWKAYRKLRDQVIELAKSGDNDEARAILNGEAR 149 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhHH
Confidence 33333444444333333344444323233333334444555666677788888888888888777766554
No 95
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=33.74 E-value=4.9e+02 Score=25.86 Aligned_cols=50 Identities=20% Similarity=0.162 Sum_probs=38.1
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcc
Q 006551 64 VVDEVVHAYHTGFNKAIQNYSQILRL-FSESAESIKELKVDLAEAKRRLGT 113 (641)
Q Consensus 64 ~L~~vV~eH~q~FN~sI~sYs~I~~~-IseSqe~I~~lK~~L~~aK~~L~~ 113 (641)
.|...|..=.+.||--...|.++++. +.+-.++|.++|.-++.++..++-
T Consensus 90 dl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~~ 140 (157)
T COG3352 90 DLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLRE 140 (157)
T ss_pred HHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 34445556678899988888888888 788888888888888888776543
No 96
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=33.74 E-value=5e+02 Score=25.97 Aligned_cols=96 Identities=14% Similarity=0.214 Sum_probs=74.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHh
Q 006551 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRS 125 (641)
Q Consensus 46 ~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s 125 (641)
+....+..|-+....+...+..........|...|.-|.....++.++-.+=..+-..+..+...|..++..+.++-..+
T Consensus 79 ~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~ 158 (236)
T PF09325_consen 79 SLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASG 158 (236)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 35666677777778888888888888889999999999999999999988888888889999999999888888886663
Q ss_pred h-hHHHHHHHHHHHHHH
Q 006551 126 V-TLRHIISLLDQIEGI 141 (641)
Q Consensus 126 ~-~~k~mL~iLd~IE~L 141 (641)
. ..+++-+...+|+++
T Consensus 159 ~~~~~k~~~~~~ei~~~ 175 (236)
T PF09325_consen 159 KNRQDKVEQAENEIEEA 175 (236)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 2 334444444444433
No 97
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=33.00 E-value=3e+02 Score=25.98 Aligned_cols=64 Identities=13% Similarity=0.237 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHhHHH
Q 006551 130 HIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGV 195 (641)
Q Consensus 130 ~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~~eL~~I~AL~dLRs~L~~qe~~ 195 (641)
.+-.++.....|..+-.+|+.....+....|...-..+++.+++ .+ ++.-+.++...+...-..
T Consensus 56 ~~~~~~~~~~~l~~~~~~ie~a~~~~~v~~al~~~~~~Lk~~~~-~i-~~~~v~~~~d~~~e~~e~ 119 (171)
T PF03357_consen 56 QLEKLLNQLSNLESVLLQIETAQSNQQVVKALKQSSKALKKINK-QI-NLDKVEKLMDDFQEEMED 119 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SHHHHHHHH-ST-TSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-hhhhHHHHHHHHHHHHHH
Confidence 34445556677778889999999999999999988889998877 55 577777777777665443
No 98
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=32.86 E-value=5.9e+02 Score=26.52 Aligned_cols=101 Identities=10% Similarity=0.117 Sum_probs=50.3
Q ss_pred HHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHH---HHHHHHH-----------hhhHHHHHH
Q 006551 68 VVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQ---LHQLWYR-----------SVTLRHIIS 133 (641)
Q Consensus 68 vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~e---Lk~Lw~~-----------s~~~k~mL~ 133 (641)
-|.+|.+.+... +-...+...+.+..+....+++.|.+|+..|..-..+ ++..+.. +.-+.++-+
T Consensus 10 ~l~~~~~~v~~~-~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~ 88 (296)
T PF13949_consen 10 SLLEKSEEVRSE-GGIEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQK 88 (296)
T ss_dssp HHHHHHHHHHHT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHH
Confidence 344555555544 5555666666666666666666666666666443222 2222210 112333333
Q ss_pred HHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHH
Q 006551 134 LLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALML 171 (641)
Q Consensus 134 iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll 171 (641)
.-..++.-.+.-..+...+.. +...+.+|..+...+
T Consensus 89 ~~~~L~~A~~sD~~~~~~~~~--~~~~l~~L~~~~~~L 124 (296)
T PF13949_consen 89 YREYLEQASESDSQLRSKLES--IEENLELLSGPIEEL 124 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHTSSHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHH--HHHHHHHHcCChhhH
Confidence 334444455555566665555 555556665544433
No 99
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=32.42 E-value=2.3e+02 Score=31.68 Aligned_cols=68 Identities=21% Similarity=0.296 Sum_probs=33.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhcc------CcHHHHHHHHHhhhHHHHHHHHHH
Q 006551 74 TGFNKAIQNYSQILRLFSESAESIK----------ELKVDLAEAKRRLGT------RNKQLHQLWYRSVTLRHIISLLDQ 137 (641)
Q Consensus 74 q~FN~sI~sYs~I~~~IseSqe~I~----------~lK~~L~~aK~~L~~------rr~eLk~Lw~~s~~~k~mL~iLd~ 137 (641)
.+++.-+...+.|...=.+|+..|. ..|+||..+-..|.. --+.|+.+ ....+|+++...|..
T Consensus 64 ~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~-~~~r~Y~e~a~~L~a 142 (383)
T PF04100_consen 64 EAIQELFEKISEIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKEL-AKKRQYKEIASLLQA 142 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHH
Confidence 4444444444545444444444444 445555544444321 11333333 334578887777766
Q ss_pred HHHHh
Q 006551 138 IEGIA 142 (641)
Q Consensus 138 IE~Lk 142 (641)
|.+|.
T Consensus 143 v~~L~ 147 (383)
T PF04100_consen 143 VKELL 147 (383)
T ss_pred HHHHH
Confidence 65543
No 100
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=32.15 E-value=4.9e+02 Score=25.43 Aligned_cols=81 Identities=20% Similarity=0.222 Sum_probs=51.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHhccCHH
Q 006551 79 AIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYY 158 (641)
Q Consensus 79 sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl 158 (641)
+++.-+.+-.-+.........++..|......+..-+++|..+-.+...++....-|..=-.+-.+|+-+..|+..+...
T Consensus 75 ~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~ 154 (177)
T PF13870_consen 75 TVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEV 154 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 33333334444444444555566666666666666666666666666667777777777777778899998888776664
Q ss_pred H
Q 006551 159 A 159 (641)
Q Consensus 159 ~ 159 (641)
.
T Consensus 155 ~ 155 (177)
T PF13870_consen 155 E 155 (177)
T ss_pred H
Confidence 4
No 101
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=31.97 E-value=3.7e+02 Score=26.54 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHH
Q 006551 98 KELKVDLAEAKRRLGTRNKQLHQLWYR 124 (641)
Q Consensus 98 ~~lK~~L~~aK~~L~~rr~eLk~Lw~~ 124 (641)
..+...+..+++.|...-+.|..+..+
T Consensus 141 ~~~~~~~~~~~~~l~~~lekL~~fd~~ 167 (204)
T PF04740_consen 141 SSFIDSLEKAKKKLQETLEKLRAFDQQ 167 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 102
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=31.93 E-value=7e+02 Score=27.15 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHH
Q 006551 85 QILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISL 134 (641)
Q Consensus 85 ~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~i 134 (641)
..+-.+.+++..|++||+-++..|..|..+...+++.+.+--.+++-|+.
T Consensus 114 EAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEs 163 (305)
T PF15290_consen 114 EAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLES 163 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHH
Confidence 45678999999999999999999999999999998887765544443333
No 103
>PRK04863 mukB cell division protein MukB; Provisional
Probab=31.47 E-value=1.4e+03 Score=30.52 Aligned_cols=158 Identities=13% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHhhhCCCCCCchhHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 006551 14 AYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSES 93 (641)
Q Consensus 14 ~~l~evL~~I~~eW~~~~Fd~l~~vL~lLss~~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseS 93 (641)
.....-|..++.++..=++||-.+..- ..++...+.....+...+..+..-+...+.=+ |.+.+..++++
T Consensus 914 ~~~~~~L~qLE~~l~~L~~Dp~~~e~l-------r~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---y~~~~~~l~~~ 983 (1486)
T PRK04863 914 QQHGNALAQLEPIVSVLQSDPEQFEQL-------KQDYQQAQQTQRDAKQQAFALTEVVQRRAHFS---YEDAAEMLAKN 983 (1486)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---HHHHHhHhhcc
Q ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhc
Q 006551 94 AESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER 173 (641)
Q Consensus 94 qe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~ 173 (641)
.+-...|++.|..++..-..-+..+++.-....+++..+..+ ++.+..+.+.+.+....++.
T Consensus 984 ~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~sl------------------ksslq~~~e~L~E~eqe~~~ 1045 (1486)
T PRK04863 984 SDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASL------------------KSSYDAKRQMLQELKQELQD 1045 (1486)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHH
Q ss_pred cCCCCCCchHHHHHHHHHhHHHHHHHHHH
Q 006551 174 EGLQTVGALQDVRSELTKLRGVLFYKVLE 202 (641)
Q Consensus 174 ~eL~~I~AL~dLRs~L~~qe~~L~d~LvE 202 (641)
-||++=.+.-..+...+..|+..|..
T Consensus 1046 ---~g~~~~~~~~~~~~~~~~~l~~~l~~ 1071 (1486)
T PRK04863 1046 ---LGVPADSGAEERARARRDELHARLSA 1071 (1486)
T ss_pred ---cCCCCCccHHHHHHHhHHHHHHHHHH
No 104
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=31.26 E-value=5.8e+02 Score=26.02 Aligned_cols=95 Identities=13% Similarity=0.169 Sum_probs=69.6
Q ss_pred HHHHhccCc--HHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhccCCCCCCchHH
Q 006551 107 AKRRLGTRN--KQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQD 184 (641)
Q Consensus 107 aK~~L~~rr--~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~~eL~~I~AL~d 184 (641)
||..+..++ .-|.-|-.+...-+.+-++..++..|.+.-..||..-.+...+.|...-..+++.+++ ++ +|.-+.+
T Consensus 57 Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k-~~-~idkVd~ 134 (191)
T PTZ00446 57 AKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNN-EI-NTQKVEK 134 (191)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-CHHHHHH
Confidence 444443333 3455555555555666677778888888889999999999999999999999999988 77 6888888
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhH
Q 006551 185 VRSELTKLRGVLFYKVLEDLHAHL 208 (641)
Q Consensus 185 LRs~L~~qe~~L~d~LvEELh~hL 208 (641)
|..++..+... .+|+.+.|
T Consensus 135 lmDei~E~~e~-----~~EIseaL 153 (191)
T PTZ00446 135 IIDTIQENKDI-----QEEINQAL 153 (191)
T ss_pred HHHHHHHHHHH-----HHHHHHHH
Confidence 88888766543 46666555
No 105
>PHA02562 46 endonuclease subunit; Provisional
Probab=30.97 E-value=8.4e+02 Score=27.79 Aligned_cols=6 Identities=17% Similarity=0.429 Sum_probs=3.0
Q ss_pred CCCCCC
Q 006551 5 DGLPIS 10 (641)
Q Consensus 5 ~~~p~p 10 (641)
||.|.+
T Consensus 102 ~~~~~~ 107 (562)
T PHA02562 102 NGKLLD 107 (562)
T ss_pred CCEEEe
Confidence 555543
No 106
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=30.90 E-value=6.8e+02 Score=27.17 Aligned_cols=80 Identities=15% Similarity=0.163 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHH
Q 006551 60 IIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIE 139 (641)
Q Consensus 60 ~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE 139 (641)
.+.+.++.+.+ +=..|......|..-...+.+.+.....+..+.....+.|.- +.|.+.-.+.-.|.+.+++...+.
T Consensus 57 ~~~~~l~~L~~-~l~~L~~~~~~f~~~~~~~~~~r~~~~~~l~~~~~l~diLEl--P~Lm~~ci~~g~y~eALel~~~~~ 133 (338)
T PF04124_consen 57 SLSDSLDSLLD-SLPELDEACQRFSSKAQKISEERKKASLLLENHDRLLDILEL--PQLMDTCIRNGNYSEALELSAHVR 133 (338)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHhcccHhhHHHHHHHHH
Confidence 33344444332 335555555555555555555555555555555554444432 445555556667777777776665
Q ss_pred HHh
Q 006551 140 GIA 142 (641)
Q Consensus 140 ~Lk 142 (641)
.|.
T Consensus 134 ~L~ 136 (338)
T PF04124_consen 134 RLQ 136 (338)
T ss_pred HHH
Confidence 554
No 107
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=30.72 E-value=6.4e+02 Score=26.33 Aligned_cols=140 Identities=12% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhccCcHHHHHHHHHhhhHH
Q 006551 63 EVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEA-------------KRRLGTRNKQLHQLWYRSVTLR 129 (641)
Q Consensus 63 ~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~a-------------K~~L~~rr~eLk~Lw~~s~~~k 129 (641)
..|....-+|-.+|-.. ..|+..+...++++.+|..++..+... ...+..-....++|-.++..|+
T Consensus 72 e~Lg~~M~~~g~~lg~~-S~~g~aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D 150 (229)
T cd07594 72 EQLGQAMIEAGNDFGPG-TAYGSALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGDMKTISKERKLLENKRLDLD 150 (229)
T ss_pred HHHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH---HHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHhHH--HHHHHHHHHH
Q 006551 130 HIISLLD---QIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRG--VLFYKVLEDL 204 (641)
Q Consensus 130 ~mL~iLd---~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~~~eL~~I~AL~dLRs~L~~qe~--~L~d~LvEEL 204 (641)
....-+. .-+....+.+.++. ++.+|.++.+.-...+.-+-. ..+.-+++|+.-+..|-. .-.-.++++|
T Consensus 151 ~~k~r~~kAk~~~~~~~~e~elr~--Ae~kF~~~~E~a~~~M~~i~~---~~~~~~~~L~~lv~AQl~Yh~q~~e~L~~l 225 (229)
T cd07594 151 ACKTRVKKAKSAEAIEQAEQDLRV--AQSEFDRQAEITKLLLEGISS---THANHLRCLRDFVEAQMTYYAQCYQYMDDL 225 (229)
T ss_pred HHHHHHhhcCCccchhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhH
Q 006551 205 HAHL 208 (641)
Q Consensus 205 h~hL 208 (641)
+..|
T Consensus 226 ~~~l 229 (229)
T cd07594 226 QRQL 229 (229)
T ss_pred HhhC
No 108
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=30.35 E-value=1.3e+03 Score=29.61 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=43.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCcHHHHHHHHH-hhhHHHHHHHHHHHHHH
Q 006551 75 GFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLG---TRNKQLHQLWYR-SVTLRHIISLLDQIEGI 141 (641)
Q Consensus 75 ~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~---~rr~eLk~Lw~~-s~~~k~mL~iLd~IE~L 141 (641)
..++.+..|++......+.+.+|.++++.|..+...+. ....+|++.+.. ..+|...-+-+..++.+
T Consensus 468 ~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~ 538 (1195)
T KOG4643|consen 468 ELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEEL 538 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778888888888888888888888888776653 345555555443 33444444444444433
No 109
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=30.13 E-value=7.2e+02 Score=26.97 Aligned_cols=76 Identities=14% Similarity=0.188 Sum_probs=40.8
Q ss_pred CCCCchhHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006551 30 PRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQ-NYSQILRLFSESAESIKELKVDLAEAK 108 (641)
Q Consensus 30 ~~Fd~l~~vL~lLss~~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~-sYs~I~~~IseSqe~I~~lK~~L~~aK 108 (641)
.+.+|+-.++...+....+-.-.+|++..... +.||.-+. ....=......+|.+|...|-.+..+|
T Consensus 145 ~~~~~L~~aL~~~S~~~~~I~~aRL~qD~~I~------------~~Fn~~l~~~Ln~~~~~a~k~RkkV~~sRL~~D~~R 212 (289)
T PF10455_consen 145 EDEDPLSKALLKYSSAYEKIAQARLEQDQLIQ------------KEFNKKLQTTLNTDFKKANKARKKVENSRLQFDAAR 212 (289)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567766666665443333334444332211 23443332 222333446667788888888888888
Q ss_pred HHhcc-CcHH
Q 006551 109 RRLGT-RNKQ 117 (641)
Q Consensus 109 ~~L~~-rr~e 117 (641)
..+.. .+++
T Consensus 213 ~~~k~~~~pe 222 (289)
T PF10455_consen 213 ANLKNKAKPE 222 (289)
T ss_pred HHhcccCCcc
Confidence 88776 3443
No 110
>PRK02224 chromosome segregation protein; Provisional
Probab=30.02 E-value=1.1e+03 Score=28.77 Aligned_cols=38 Identities=24% Similarity=0.363 Sum_probs=19.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHhHhcCCCcccccc
Q 006551 182 LQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSAVL 219 (641)
Q Consensus 182 L~dLRs~L~~qe~~L~d~LvEELh~hLYlKs~~~~~~~ 219 (641)
+..++.++....-.-+...+.++-..+|....|+...|
T Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 761 (880)
T PRK02224 724 YGDLRAELRQRNVETLERMLNETFDLVYQNDAYSHIEL 761 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeEEEe
Confidence 33455555444444444555566666676655554443
No 111
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=29.87 E-value=1e+03 Score=28.91 Aligned_cols=136 Identities=22% Similarity=0.287 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hccCcHHHHHHHHHhh
Q 006551 53 ILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRR------LGTRNKQLHQLWYRSV 126 (641)
Q Consensus 53 ~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~------L~~rr~eLk~Lw~~s~ 126 (641)
-|++..-.++.+|.++|.+|. |++--.=--+=+.+.+++.+++++|+.|+.. |....-.|-+++.+.+
T Consensus 653 mlndlt~lLDEal~~l~E~hn------iqs~Lad~~s~sn~~e~~~elq~~la~a~rqA~~sc~l~d~~~~lf~~~~~~i 726 (929)
T COG5113 653 MLNDLTRLLDEALKELVEEHN------IQSLLADAISNSNISERIGELQKSLAFAKRQARNSCLLVDGCFDLFTHILDEI 726 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHh------HHHHHHhhhccCchhhHHHHHHHHHHHHHHhhcchheecccHHHHHHHHhhcc
Confidence 345555677999999999883 2221100000113556677777777766654 3344556666665554
Q ss_pred h----HHHHHHHHHHH---------------------------------------HHHhcchHHHHHHHhccCHHHHHHH
Q 006551 127 T----LRHIISLLDQI---------------------------------------EGIAKVPARIEKLIAGKQYYAAVQL 163 (641)
Q Consensus 127 ~----~k~mL~iLd~I---------------------------------------E~Lk~vP~kIE~lIseK~Yl~Av~L 163 (641)
- -.+|+.-|-.| =.|+.-|.-|++--++|++.. .++
T Consensus 727 P~aF~~~EiV~rla~mLNyNL~~l~GPKC~~LkVkdP~~Y~FnaK~LL~~~~~VYinl~~es~FveaVA~D~rsf~-~~~ 805 (929)
T COG5113 727 PDAFLVDEIVSRLARMLNYNLKILTGPKCTDLKVKDPEQYGFNAKNLLRRMVMVYINLRSESKFVEAVASDKRSFD-IDF 805 (929)
T ss_pred chhhhhHHHHHHHHHHHhCcchhccCCCccceeecChhhcCCCHHHHHHHHHHHhhhhcchHHHHHHHHccccccc-HHH
Confidence 1 11222222111 123333555555555555543 478
Q ss_pred HHHHHHHHhccCCCCCCchHHHHHHHHHhHHH
Q 006551 164 HAQSALMLEREGLQTVGALQDVRSELTKLRGV 195 (641)
Q Consensus 164 L~~s~~ll~~~eL~~I~AL~dLRs~L~~qe~~ 195 (641)
.++|.+++.+..|.+=.-+..||+.....|+.
T Consensus 806 F~rA~~I~~~k~L~s~~~IE~l~~f~nr~E~~ 837 (929)
T COG5113 806 FRRALRICENKYLISESQIEELRSFINRLEKV 837 (929)
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHHHH
Confidence 89999999988898766666677666555543
No 112
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.85 E-value=5.3e+02 Score=25.05 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH
Q 006551 49 GEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAES 96 (641)
Q Consensus 49 ~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~ 96 (641)
.....|+.....+.+.+..+|..+ ++....++.|+.....++.+...
T Consensus 11 ~~v~~le~~l~~l~~~~~~~~k~~-~~l~~~~~elg~~~~~Ls~~e~~ 57 (218)
T cd07596 11 DYILKLEEQLKKLSKQAQRLVKRR-RELGSALGEFGKALIKLAKCEEE 57 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccc
Confidence 334566666777777777666655 66666888888888888887654
No 113
>PRK03918 chromosome segregation protein; Provisional
Probab=29.68 E-value=1.1e+03 Score=28.66 Aligned_cols=8 Identities=13% Similarity=0.385 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 006551 320 QTMVECLC 327 (641)
Q Consensus 320 ~~LlEsLn 327 (641)
..+++.|.
T Consensus 831 ~~l~~~l~ 838 (880)
T PRK03918 831 RKLVDIME 838 (880)
T ss_pred HHHHHHHH
Confidence 34444433
No 114
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.23 E-value=1.4e+03 Score=29.72 Aligned_cols=168 Identities=9% Similarity=0.028 Sum_probs=0.0
Q ss_pred CCCCCCC-CChHHHHHHHHHhHhhhCCCCCCchhHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 006551 4 FDGLPIS-PEKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQN 82 (641)
Q Consensus 4 ~~~~p~p-~d~~~l~evL~~I~~eW~~~~Fd~l~~vL~lLss~~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~s 82 (641)
++|.+.+ .+...+..+++.|...-. ..+.++..+....+.-...++..+++=.......-..
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~ 441 (1311)
T TIGR00606 379 LDGFERGPFSERQIKNFHTLVIERQE-----------------DEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRT 441 (1311)
T ss_pred cCCCCCcccchHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHH
Q 006551 83 YSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQ 162 (641)
Q Consensus 83 Ys~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~ 162 (641)
.......+......+..+...|........ +|..+-.+-..+..-++.+..-........+|+. --.-..
T Consensus 442 ~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------~~~~~~ 511 (1311)
T TIGR00606 442 IELKKEILEKKQEELKFVIKELQQLEGSSD----RILELDQELRKAERELSKAEKNSLTETLKKEVKS------LQNEKA 511 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccChH----HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH------HHHHHH
Q ss_pred HHHHHHHHHhccCCCCCCchHHHHHHHHHhHHHHHHH
Q 006551 163 LHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYK 199 (641)
Q Consensus 163 LL~~s~~ll~~~eL~~I~AL~dLRs~L~~qe~~L~d~ 199 (641)
-|..-+..++. ++.......+.|+.|..+++.+.+.
T Consensus 512 ~le~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~k 547 (1311)
T TIGR00606 512 DLDRKLRKLDQ-EMEQLNHHTTTRTQMEMLTKDKMDK 547 (1311)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
No 115
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=28.65 E-value=1.1e+03 Score=28.17 Aligned_cols=48 Identities=6% Similarity=0.184 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006551 56 DQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDL 104 (641)
Q Consensus 56 ~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L 104 (641)
+..+.++.+|++ +.+|-+.+..+|.+|....+.+.++|.++..+...+
T Consensus 124 ~lS~~ledaL~a-aq~~ad~l~q~~~~~~~Aq~~l~~aq~~l~~lq~~a 171 (593)
T PRK15374 124 QVSKEFQTALGE-AQEATDLYEASIKKTDTAKSVYDAAEKKLTQAQNKL 171 (593)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334555666654 578999999999999999999999999999886554
No 116
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=28.41 E-value=5.7e+02 Score=28.01 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=18.7
Q ss_pred HHhcchHHHHHHHhccCHHHHHHH
Q 006551 140 GIAKVPARIEKLIAGKQYYAAVQL 163 (641)
Q Consensus 140 ~Lk~vP~kIE~lIseK~Yl~Av~L 163 (641)
.|..+-..|..++++++|.+.+-.
T Consensus 244 Ql~ELRadIK~fvs~rk~de~lg~ 267 (302)
T PF07139_consen 244 QLAELRADIKHFVSERKYDEELGR 267 (302)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHhH
Confidence 445556789999999999887653
No 117
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=27.82 E-value=73 Score=31.41 Aligned_cols=41 Identities=27% Similarity=0.151 Sum_probs=33.3
Q ss_pred HhhCChHHHHHHHHhhhhHHHH--HHHHHHHHHHHHHhhhchh
Q 006551 327 CILGKVAAAGAIICQRLRPTIH--EIITSKIKAHAQLINSSRS 367 (641)
Q Consensus 327 n~LgKL~~Aldil~qRl~~ELh--~IV~~ti~e~~~~~~~s~~ 367 (641)
..|++-..||..|.+|.|.||- .....||+++|..|++.=.
T Consensus 92 ~el~~~A~~LK~iLSrIPdei~dR~~FL~tIK~IAsaIK~lLd 134 (154)
T PF06840_consen 92 QELNKRATALKRILSRIPDEISDRRTFLETIKEIASAIKKLLD 134 (154)
T ss_dssp HHHHHHHHHHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 3467788999999999999994 5777899999988876443
No 118
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=27.76 E-value=6.1e+02 Score=28.07 Aligned_cols=32 Identities=28% Similarity=0.269 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcC
Q 006551 427 AKELLDSILDSVVRIFENHVVVGELLESRSSR 458 (641)
Q Consensus 427 l~elf~slf~k~~avle~Hrvv~ev~~~i~~r 458 (641)
-+=+.+++|-.++.++|+.=--+-+=..++-.
T Consensus 211 ~~fl~f~~~~~~vq~lQ~~YQ~~~Ly~l~AlG 242 (330)
T PF07851_consen 211 PQFLLFSLYQSVVQFLQYRYQRGCLYRLRALG 242 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 34457899999999999986666666666543
No 119
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.66 E-value=1.1e+03 Score=27.88 Aligned_cols=115 Identities=16% Similarity=0.129 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHH
Q 006551 91 SESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALM 170 (641)
Q Consensus 91 seSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~l 170 (641)
-.-|+++..++..|+.+...-..--..|.++...+++..-.-+.|.+-..+-+.-..+|.-.+.++...|.+.|..-.+-
T Consensus 84 ~~Lq~kma~il~el~~aegesadCiAaLaRldn~kQkleaA~esLQdaaGl~nL~a~lED~Fa~gDL~~aadkLaalqkc 163 (828)
T KOG4182|consen 84 HRLQEKMAAILLELAAAEGESADCIAALARLDNKKQKLEAAKESLQDAAGLGNLLAELEDGFARGDLKGAADKLAALQKC 163 (828)
T ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCchhHHHHHHHHHHH
Confidence 34456666666666666554444445678888888888888888888888888889999999999998888877654444
Q ss_pred HhccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHh
Q 006551 171 LEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAH 207 (641)
Q Consensus 171 l~~~eL~~I~AL~dLRs~L~~qe~~L~d~LvEELh~h 207 (641)
+.. -..+......|.+|+-.+..|.-+.---|.++
T Consensus 164 L~A--~~elaefAe~qkQlE~~edRLEAlaqPrltda 198 (828)
T KOG4182|consen 164 LHA--QEELAEFAERQKQLEDFEDRLEALAQPRLTDA 198 (828)
T ss_pred HHH--HHHhHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 422 22455566777788777777665554444443
No 120
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=27.53 E-value=1e+03 Score=27.77 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=27.5
Q ss_pred HHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHHh
Q 006551 138 IEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLE 172 (641)
Q Consensus 138 IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll~ 172 (641)
++.+-.-=++.+.+..+++|.+|.+.+.+.-.-+.
T Consensus 174 l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~ 208 (569)
T PRK04778 174 LENLEEEFSQFVELTESGDYVEAREILDQLEEELA 208 (569)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 55555667889999999999999999876655443
No 121
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=27.52 E-value=2.7e+02 Score=32.74 Aligned_cols=12 Identities=17% Similarity=0.446 Sum_probs=6.5
Q ss_pred HHHHHHhcchHH
Q 006551 136 DQIEGIAKVPAR 147 (641)
Q Consensus 136 d~IE~Lk~vP~k 147 (641)
.++++|+++|.+
T Consensus 251 ~~~~~lk~ap~~ 262 (555)
T TIGR03545 251 ADLAELKKAPQN 262 (555)
T ss_pred HHHHHHHhccHh
Confidence 445555566654
No 122
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.36 E-value=1.3e+03 Score=28.78 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHH
Q 006551 83 YSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLL 135 (641)
Q Consensus 83 Ys~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iL 135 (641)
.+++...|.+.+-++...|..++..+.......-++.+|-.+-+++..++.-|
T Consensus 453 ~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l 505 (1118)
T KOG1029|consen 453 LQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKL 505 (1118)
T ss_pred HHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555666666655555555555666666655555555444
No 123
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=26.50 E-value=7.3e+02 Score=29.76 Aligned_cols=121 Identities=17% Similarity=0.229 Sum_probs=78.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcchH--HHHHH-Hh
Q 006551 77 NKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPA--RIEKL-IA 153 (641)
Q Consensus 77 N~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~--kIE~l-Is 153 (641)
..++..|..+-+.|+..-.++. .-.+.|..+...+..+-+..+++.-..++..-+. .++.+ -.
T Consensus 2 ~~~~~~f~~Ld~~i~~v~~~~~--------------~iG~~Le~~~~~r~ra~~a~~Li~~y~ef~~~~~~~~l~~l~~~ 67 (710)
T PF07393_consen 2 QEAIDSFQQLDERISEVSQKAV--------------HIGDQLESADRQRSRAIEAIELIPYYNEFLSKGSYSNLEKLFRT 67 (710)
T ss_pred hHHHHHHHHHHHHHhHHHHHHh--------------chhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCccchHHHhhc
Confidence 3455556665555555333333 3345555555666666666666666666555543 44444 22
Q ss_pred cc---CHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHhHhcCCCc
Q 006551 154 GK---QYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEY 214 (641)
Q Consensus 154 eK---~Yl~Av~LL~~s~~ll~~~eL~~I~AL~dLRs~L~~qe~~L~d~LvEELh~hLYlKs~~ 214 (641)
.+ +-.+|..++.+=. .+.+ ++..++.....+..++...+.+-..|++|+ ++-|.++.+
T Consensus 68 ~~~~~~~~~~A~il~~L~-~ls~-~~~~~~~~~~~~~~I~~~~e~fE~~LL~eF-e~ay~~~d~ 128 (710)
T PF07393_consen 68 FTDPEDPEEAAKILRNLL-RLSK-ELSDIPGFEEARENIEKYCEIFENALLREF-EIAYREGDY 128 (710)
T ss_pred ccCccchHHHHHHHHHHH-HHHH-hcCCchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCH
Confidence 22 3478888877444 4444 566899999999999999999999999999 455777654
No 124
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=26.40 E-value=4.2e+02 Score=22.85 Aligned_cols=51 Identities=12% Similarity=0.231 Sum_probs=31.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHH
Q 006551 79 AIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLR 129 (641)
Q Consensus 79 sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k 129 (641)
++..+......+..-...|...+..+..++..+...+..|.+.+.+...+.
T Consensus 43 s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e 93 (123)
T PF02050_consen 43 SVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLE 93 (123)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666667777777777777777777776555555544444443333
No 125
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=26.04 E-value=6.4e+02 Score=24.82 Aligned_cols=104 Identities=11% Similarity=0.133 Sum_probs=55.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcchH------H
Q 006551 74 TGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPA------R 147 (641)
Q Consensus 74 q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~------k 147 (641)
-.|--.||.+...+.....+++.+...+..+..|-..+ ++......+.++...++..+.+..-+. +
T Consensus 43 ~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~i--------rv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 43 ADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVI--------RVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHH--------HHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 34455566666666666666666655555555443332 233333334444444444443333311 1
Q ss_pred HH-----HHHhccCHHHHHHHHHHHHHHHhccCCCCCCchHHH
Q 006551 148 IE-----KLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDV 185 (641)
Q Consensus 148 IE-----~lIseK~Yl~Av~LL~~s~~ll~~~eL~~I~AL~dL 185 (641)
+. ..|..++|..|.+++.++.......+...+=+..|+
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~~~~~el~s~~d~ 157 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLSTFTSLQYTELISYNDF 157 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcCCCCCchhhhcCHHHH
Confidence 11 357789999999999988766654233444444444
No 126
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.82 E-value=2.1e+02 Score=33.77 Aligned_cols=61 Identities=8% Similarity=0.152 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006551 53 ILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGT 113 (641)
Q Consensus 53 ~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~ 113 (641)
.|+...+.+.--|+.+=++--+-.|+--+.|-.+...+-.-++.+..|+.-|.+-++.+..
T Consensus 47 ~letLrddLrlylksl~~aMieLIN~DYADFVnLStnLVgld~aln~i~qpL~qlreei~s 107 (705)
T KOG2307|consen 47 DLETLRDDLRLYLKSLQNAMIELINDDYADFVNLSTNLVGLDDALNKIEQPLNQLREEIKS 107 (705)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccHHHHHHHHHhHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555555555555444444433
No 127
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=25.80 E-value=5.4e+02 Score=28.38 Aligned_cols=75 Identities=19% Similarity=0.150 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHH
Q 006551 83 YSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQ 162 (641)
Q Consensus 83 Ys~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~ 162 (641)
..-|...+.+.+.+|...|+.|++..+ ++.+.-... .+-+..|+ +.|..+=+++|+|-.++...+|..
T Consensus 85 ~~~l~~~v~d~~rri~~~kerL~e~~e-------e~~~e~~~k---~~~v~~l~--e~I~~~l~~~E~LG~eG~Veeaq~ 152 (319)
T KOG0796|consen 85 LEILERFVADVDRRIEKAKERLAETVE-------ERSEEAARK---AEKVHELE--EKIGKLLEKAEELGEEGNVEEAQK 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh-------hhhhHHHHH---HHHHHHHH--HHHHHHHHHHHHHhhcCCHHHHHH
Confidence 344667788888899999999999833 111111111 11122222 455566789999999999988888
Q ss_pred HHHHHHH
Q 006551 163 LHAQSAL 169 (641)
Q Consensus 163 LL~~s~~ 169 (641)
++.++-.
T Consensus 153 ~~~e~E~ 159 (319)
T KOG0796|consen 153 AMKEVEE 159 (319)
T ss_pred HHHHHHH
Confidence 7765543
No 128
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.57 E-value=6.2e+02 Score=24.51 Aligned_cols=79 Identities=11% Similarity=0.173 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHh
Q 006551 47 REGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRS 125 (641)
Q Consensus 47 rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s 125 (641)
+...+..+-+..+.+...+..........|...+.-|......+.+.-..=..+-..+..+...+...+..+.+|-...
T Consensus 62 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~ 140 (218)
T cd07596 62 LGEALSKLGKAAEELSSLSEAQANQELVKLLEPLKEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAP 140 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5566677777778888888888888888888899999888888888888877888888888888888887777775543
No 129
>PRK02224 chromosome segregation protein; Provisional
Probab=25.37 E-value=1.3e+03 Score=28.13 Aligned_cols=10 Identities=0% Similarity=0.165 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 006551 196 LFYKVLEDLH 205 (641)
Q Consensus 196 L~d~LvEELh 205 (641)
.+..+..++.
T Consensus 742 ~~~~~~~~~~ 751 (880)
T PRK02224 742 MLNETFDLVY 751 (880)
T ss_pred HHHHHHHHHc
Confidence 3444444553
No 130
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=25.29 E-value=6.2e+02 Score=24.41 Aligned_cols=81 Identities=12% Similarity=0.220 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhh
Q 006551 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT 127 (641)
Q Consensus 48 E~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~ 127 (641)
..+..+|=+.....-..+...|.+=.+...............+....+.+..+.+.|......+..-...+.++.....+
T Consensus 81 A~eir~LA~~t~~~~~~I~~~i~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~~ 160 (213)
T PF00015_consen 81 ADEIRKLAEQTSESAKEISEIIEEIQEQISQVVESMEESREQIEEGSESVEETSESLEEIAESVEEISDSIEEISESAEE 160 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhcccchhcchhhhhhhhhhhHHhhhhHHHHhhHHH
Confidence 44555555555555555566666555555555555555555566665666666655555555544444444444444443
Q ss_pred H
Q 006551 128 L 128 (641)
Q Consensus 128 ~ 128 (641)
.
T Consensus 161 ~ 161 (213)
T PF00015_consen 161 Q 161 (213)
T ss_dssp H
T ss_pred H
Confidence 3
No 131
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=25.10 E-value=5.8e+02 Score=23.95 Aligned_cols=67 Identities=19% Similarity=0.111 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 006551 48 EGEVQILKDQNDIIEEV---VDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTR 114 (641)
Q Consensus 48 E~e~~~Le~~~~~l~~~---L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~r 114 (641)
+..+..|...+..++-. ++-++..+...--+-=..+..|...|...++.|..+|..|..||.....+
T Consensus 45 ~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k 114 (139)
T PF05615_consen 45 QFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNK 114 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333 33344443333333334455778888899999999999999998875444
No 132
>PTZ00320 ribosomal protein L14; Provisional
Probab=24.91 E-value=46 Score=33.58 Aligned_cols=41 Identities=32% Similarity=0.537 Sum_probs=26.3
Q ss_pred cccccccCCCCcccccccccc------------CCCcccccCcccccccCCCcce
Q 006551 548 TDATISIPNQGADLIRQGWSR------------RGTNVLQEGYGTAAVLPEQGIY 590 (641)
Q Consensus 548 ~d~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 590 (641)
||+.--+|. |.| ++..|-| ..-..-.|||||+--.+||...
T Consensus 14 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qT~L 66 (188)
T PTZ00320 14 TDAAAKLPA-GNP-VNKSWFRHNLIIRRKASYRSRWGTGAEGYGTGVPFSDQVKL 66 (188)
T ss_pred cchhhcCCC-CCc-cchhhhhheeEEeecchhhhccccCccccccCCccCCCcEE
Confidence 677777775 444 4445542 1223457999999999988643
No 133
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=24.33 E-value=1.5e+03 Score=28.50 Aligned_cols=92 Identities=17% Similarity=0.295 Sum_probs=64.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHh
Q 006551 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRS 125 (641)
Q Consensus 46 ~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s 125 (641)
++.+.+.++.+..+.....+++--. --++||..+........+..+++.+|.+-...+...++ ..+||...
T Consensus 178 GrnP~iNq~l~klkq~~~ei~e~ek--------e~a~yh~lLe~r~~~~~rl~~l~~elr~~~~~i~~~~~-~v~l~~~l 248 (984)
T COG4717 178 GRNPQINQLLEKLKQERNEIDEAEK--------EYATYHKLLESRRAEHARLAELRSELRADRDHIRALRD-AVELWPRL 248 (984)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHH
Confidence 5666666665555544444444333 34789999999999999999999999998888776554 56788888
Q ss_pred hhHHHHHHHHHH-HHHHhcchH
Q 006551 126 VTLRHIISLLDQ-IEGIAKVPA 146 (641)
Q Consensus 126 ~~~k~mL~iLd~-IE~Lk~vP~ 146 (641)
++.+.+-+-|+- -++.-..|.
T Consensus 249 qE~k~Leqel~~~~~e~~~fP~ 270 (984)
T COG4717 249 QEWKQLEQELTRRREELATFPR 270 (984)
T ss_pred HHHHHHHHHhccchhhhccCCc
Confidence 888877776663 233444443
No 134
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=24.24 E-value=1.5e+02 Score=26.71 Aligned_cols=87 Identities=15% Similarity=0.264 Sum_probs=55.9
Q ss_pred HHHHHhHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhh----hHHHHHHHHHHHHH
Q 006551 67 EVVHAYHTGFNKAIQ--NYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSV----TLRHIISLLDQIEG 140 (641)
Q Consensus 67 ~vV~eH~q~FN~sI~--sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~----~~k~mL~iLd~IE~ 140 (641)
+.+..|++.|...|+ ..-.+...+.-|...|..++.+= ... ..+.-++...|.+.. .+..+++.|..|..
T Consensus 4 ~~l~~~f~~i~~~V~~~~Wk~laR~LGLse~~I~~i~~~~---~~~-~eq~~qmL~~W~~~~G~~At~~~L~~aL~~~~~ 79 (96)
T cd08315 4 ETLRRSFDHFIKEVPFDSWNRLMRQLGLSENEIDVAKANE---RVT-REQLYQMLLTWVNKTGRKASVNTLLDALEAIGL 79 (96)
T ss_pred hHHHHHHHHHHHHCCHHHHHHHHHHcCCCHHHHHHHHHHC---CCC-HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHccc
Confidence 445667777777775 56677788888888888887762 112 334456667777654 68888888888764
Q ss_pred HhcchHHHHHHHhccCH
Q 006551 141 IAKVPARIEKLIAGKQY 157 (641)
Q Consensus 141 Lk~vP~kIE~lIseK~Y 157 (641)
=.....--+.+++++.|
T Consensus 80 ~~~Ae~I~~~l~~~~~~ 96 (96)
T cd08315 80 RLAKESIQDELISSGKF 96 (96)
T ss_pred ccHHHHHHHHHHHcCCC
Confidence 43333333455555554
No 135
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=24.12 E-value=4.7e+02 Score=23.88 Aligned_cols=65 Identities=17% Similarity=0.299 Sum_probs=47.1
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHh-cchHH
Q 006551 69 VHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIA-KVPAR 147 (641)
Q Consensus 69 V~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk-~vP~k 147 (641)
-..|-+.||.--..|..+...|.....+..+|-..|..+.. .+.+|..+-++++.-..++ .-|.=
T Consensus 10 R~~Yk~eF~~~y~EYk~L~~~v~~v~~~f~~L~~~l~~l~~--------------~s~ey~~i~~I~~eY~k~Kk~~p~y 75 (101)
T PF07303_consen 10 RQRYKAEFNDDYDEYKELHAEVDAVSRRFQELDSELKRLPP--------------GSQEYKRIAQILQEYNKKKKRDPNY 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-T--------------TSHHHHHHH---HHHHHHHHTSHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------------CCcHHHHHHHHHHHHHHHHhcCccH
Confidence 35678999999999999999999999888888877765544 5667777777777777773 45543
No 136
>PRK10884 SH3 domain-containing protein; Provisional
Probab=24.07 E-value=6.7e+02 Score=25.74 Aligned_cols=13 Identities=31% Similarity=0.440 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 006551 49 GEVQILKDQNDII 61 (641)
Q Consensus 49 ~e~~~Le~~~~~l 61 (641)
.+++++++..+.+
T Consensus 100 ~el~~l~~~l~~~ 112 (206)
T PRK10884 100 NQVKTLTDKLNNI 112 (206)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 137
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=24.02 E-value=1.1e+03 Score=26.63 Aligned_cols=52 Identities=12% Similarity=0.199 Sum_probs=28.8
Q ss_pred HHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH
Q 006551 70 HAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQL 121 (641)
Q Consensus 70 ~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~L 121 (641)
.+-|.+....+..|..+...+..-...+..+...++.++..+...-+++.+|
T Consensus 286 ~~~~~~~~~~~~~l~~~~~~l~~yl~~~~~~~~~~~~~~~~i~~~~~~l~~L 337 (412)
T PF04108_consen 286 RELYNALSEALEELRKFGERLPSYLAAFHDFEERWEEEKESIQAYIDELEQL 337 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555566666666666666666444444444444
No 138
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=24.00 E-value=5.6e+02 Score=23.38 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHH
Q 006551 83 YSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQ 162 (641)
Q Consensus 83 Ys~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~ 162 (641)
-..+...++..++.|.+ ++-..|++. .++|.+.|.+....=.++---++|+.+-..=.++..+|..++...|..
T Consensus 25 ~~~i~~~l~~i~~~i~~--~dW~~A~~~----~~~l~~~W~k~~~~~~~~~~h~eid~i~~sl~rl~~~i~~~dk~~~l~ 98 (121)
T PF14276_consen 25 TDSIEEQLEQIEEAIEN--EDWEKAYKE----TEELEKEWDKNKKRWSILIEHQEIDNIDISLARLKGYIEAKDKSESLA 98 (121)
T ss_pred HHHHHHHHHHHHHHHHh--CCHHHHHHH----HHHHHHHHHhhchheeeeecHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455555555555544 444455444 367777788777666666666777777788889999999999766655
Q ss_pred HHHHHHH
Q 006551 163 LHAQSAL 169 (641)
Q Consensus 163 LL~~s~~ 169 (641)
-|.....
T Consensus 99 el~~lk~ 105 (121)
T PF14276_consen 99 ELAELKE 105 (121)
T ss_pred HHHHHHH
Confidence 4444333
No 139
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=24.00 E-value=70 Score=27.09 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=25.8
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHhccC
Q 006551 146 ARIEKLIAGKQYYAAVQLHAQSALMLEREG 175 (641)
Q Consensus 146 ~kIE~lIseK~Yl~Av~LL~~s~~ll~~~e 175 (641)
.-|+..+..++|-.|.+++..+++++...+
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le~~e 41 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLEERE 41 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Confidence 456777889999999999999999998755
No 140
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=23.98 E-value=1e+03 Score=26.44 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=48.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006551 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAI------QNYSQILRLFSESAESIKELKVDLAEAKRRLGT 113 (641)
Q Consensus 46 ~rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI------~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~ 113 (641)
.+|..+++|+++.......|+++|..+.....++= ..=.++....+.+.++-..-++-|..||..+.-
T Consensus 35 ~Le~ar~~Fretqv~~t~kl~el~Kk~~k~I~ksrpf~elk~~er~~r~e~QkAa~~FeRat~vl~~AkeqVsl 108 (426)
T KOG2008|consen 35 ELEDARQKFRETQVEATVKLDELVKKIGKAIEKSRPFWELKRVERQARLEAQKAAQDFERATEVLRAAKEQVSL 108 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778889999999999999999987766554443 333566666677777777777777777765543
No 141
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=23.85 E-value=9.7e+02 Score=26.12 Aligned_cols=42 Identities=17% Similarity=0.355 Sum_probs=34.7
Q ss_pred HhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006551 71 AYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLG 112 (641)
Q Consensus 71 eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~ 112 (641)
++-+-|+.-+..|...+..|.++..+=..+=+.|..+...+.
T Consensus 237 ~~e~lF~~eL~kf~~~~~~v~~~~~~Q~~ll~~i~~~n~~f~ 278 (339)
T cd09238 237 SYDALFKEELKKYDSVREAVSKNISSQDDLLSRLRALNEKFS 278 (339)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444559999999999999999998888888888888887764
No 142
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=23.75 E-value=5.1e+02 Score=24.43 Aligned_cols=104 Identities=12% Similarity=0.218 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccCcHH
Q 006551 48 EGEVQILKDQNDIIEEVVDEVVHAYHT----GFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRL------GTRNKQ 117 (641)
Q Consensus 48 E~e~~~Le~~~~~l~~~L~~vV~eH~q----~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L------~~rr~e 117 (641)
+....+|+...+.+...++..+..... .+-+....+.+....+.....++..+...+..+.... ..-...
T Consensus 14 ~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~~v~~al~~~~~~ 93 (171)
T PF03357_consen 14 EKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQQVVKALKQSSKA 93 (171)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666656666666666654432 3444555666677777777777777777777766543 233455
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHH
Q 006551 118 LHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLI 152 (641)
Q Consensus 118 Lk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lI 152 (641)
|+++. ..+...++-++++.+++...--+.+...|
T Consensus 94 Lk~~~-~~i~~~~v~~~~d~~~e~~e~~~ei~~~l 127 (171)
T PF03357_consen 94 LKKIN-KQINLDKVEKLMDDFQEEMEDQDEISEAL 127 (171)
T ss_dssp HHHHH-HSTTSCCHHHHHHHHHHHHHHHTS-----
T ss_pred HHHHH-HhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55552 23444555555555555444444443333
No 143
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=23.61 E-value=6.5e+02 Score=24.92 Aligned_cols=49 Identities=22% Similarity=0.411 Sum_probs=34.6
Q ss_pred hccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHhccCHHHHHHHHHHHHHHH
Q 006551 111 LGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALML 171 (641)
Q Consensus 111 L~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~ll 171 (641)
+..+.+++.+|..++..+|.+|..+ |++|-. .+.|++.++-|..+.+.+
T Consensus 84 ~~~~~~~~~el~~~A~~LK~iLSrI---------Pdei~d---R~~FL~tIK~IAsaIK~l 132 (154)
T PF06840_consen 84 LSRREPEFQELNKRATALKRILSRI---------PDEISD---RRTFLETIKEIASAIKKL 132 (154)
T ss_dssp -SS-SHHHHHHHHHHHHHHHHHHTH---------HHHTTS---HHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhcC---------cHhhcc---hHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999888755 777653 245777776666666554
No 144
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=23.54 E-value=7.8e+02 Score=24.92 Aligned_cols=151 Identities=15% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhH
Q 006551 49 GEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTL 128 (641)
Q Consensus 49 ~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~ 128 (641)
..+..|+.....+.+.+..+|..| .+...+++.|+..+..+..+. .-..|..+=..++..-..+.+++.+ +..
T Consensus 11 ~~i~~Le~~Lk~l~~~~~~l~~~r-~ela~~~~efa~~~~~L~~~E-----~~~~l~~~l~~~a~~~~~~~~~~~~-~a~ 83 (216)
T cd07627 11 QYLDSLESQLKQLYKSLELVSSQR-KELASATEEFAETLEALSSLE-----LSKSLSDLLAALAEVQKRIKESLER-QAL 83 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh-----cchHhHHHHHHHHHHHHHHHHHHHH-HHH
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHhcc-----CHHHHHHHHHHHHHHHhccCCCC-------------CCchHHHHHHHH
Q 006551 129 RHIISLLDQIEGIAKVPARIEKLIAGK-----QYYAAVQLHAQSALMLEREGLQT-------------VGALQDVRSELT 190 (641)
Q Consensus 129 k~mL~iLd~IE~Lk~vP~kIE~lIseK-----~Yl~Av~LL~~s~~ll~~~eL~~-------------I~AL~dLRs~L~ 190 (641)
.+++.+-+.|.+....-.-+...+..+ +|..|..-|......+++....+ |..+..--+...
T Consensus 84 ~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~ 163 (216)
T cd07627 84 QDVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELK 163 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHHHHH
Q 006551 191 KLRGVLFYKVLEDLHA 206 (641)
Q Consensus 191 ~qe~~L~d~LvEELh~ 206 (641)
..-..+-+.+..||.+
T Consensus 164 ~~~e~is~~~k~El~r 179 (216)
T cd07627 164 KEFEEVSELIKSELER 179 (216)
T ss_pred HHHHHHHHHHHHHHHH
No 145
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=22.76 E-value=9e+02 Score=25.36 Aligned_cols=66 Identities=9% Similarity=0.152 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006551 47 REGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQ-ILRLFSESAESIKELKVDLAEAKRRLG 112 (641)
Q Consensus 47 rE~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~-I~~~IseSqe~I~~lK~~L~~aK~~L~ 112 (641)
....+...-+....+..........=.+.|+..+.++.. -...|+..+.++...|=.+..||..+.
T Consensus 79 lg~~L~~~g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~ 145 (244)
T cd07595 79 LGKVLKLCGEAQNTLARELVDHEMNVEEDVLSPLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRYN 145 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 334444444444555555555555555677777777763 456777777777777777777777764
No 146
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.56 E-value=1.4e+03 Score=27.96 Aligned_cols=8 Identities=13% Similarity=0.244 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 006551 320 QTMVECLC 327 (641)
Q Consensus 320 ~~LlEsLn 327 (641)
..++.-++
T Consensus 702 ~~~v~~ik 709 (717)
T PF10168_consen 702 DELVKQIK 709 (717)
T ss_pred HHHHHHHH
Confidence 33333333
No 147
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=22.16 E-value=5.7e+02 Score=22.87 Aligned_cols=75 Identities=13% Similarity=0.343 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhccCcHHHHHHH
Q 006551 49 GEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEA------KRRLGTRNKQLHQLW 122 (641)
Q Consensus 49 ~e~~~Le~~~~~l~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~L~~a------K~~L~~rr~eLk~Lw 122 (641)
.+...+++..+.+++.-..++....+++...+..=..++..|....+....+-..+... ...+. .+.+|..+|
T Consensus 12 ~~~~~~~~L~~ll~~e~~~l~~~d~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~~~~~~l~~~~~-~~~~l~~~~ 90 (143)
T PF05130_consen 12 EQIELLQELLELLEEEREALISGDIDELEELVEEKQELLEELRELEKQRQQLLAKLGAEPEEATLSELIE-EREELQALW 90 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SCHHHHHHHHC-CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHh-ccHHHHHHH
Confidence 34445555566777778888888888888888888888888888887777766665433 22222 666777776
Q ss_pred HH
Q 006551 123 YR 124 (641)
Q Consensus 123 ~~ 124 (641)
.+
T Consensus 91 ~~ 92 (143)
T PF05130_consen 91 RE 92 (143)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 148
>PF11053 DNA_Packaging: Terminase DNA packaging enzyme; InterPro: IPR020342 This entry represents the DNA-packaging protein Gp16 found in Enterobacteria phage T4 (Bacteriophage T4). Double-stranded DNA packaging in bacteriophages is driven by a molecular motor. The phage T4 motor is composed of the small terminase protein, Gpl6 (18kDa), the large terminase protein, Gp17 (70kDa), and the dodecameric portal protein Gp20 (61kDa). Gp16 is involved in the recognition of the viral DNA substrate, the very first step in the DNA packaging pathway, and stimulates the ATPase and packaging activities associated with Gp17 []. Gp16 modulates the activity of Gp17 [] and is required to translocate phage T4 DNA into the head []. ; PDB: 3TXS_D 3TXQ_I.
Probab=21.27 E-value=5.5e+02 Score=25.44 Aligned_cols=56 Identities=9% Similarity=0.220 Sum_probs=41.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH------------HhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006551 46 DREGEVQILKDQNDIIEEVVDEVVH------------AYHTGFNKAIQNYSQILRLFSESAESIKELK 101 (641)
Q Consensus 46 ~rE~e~~~Le~~~~~l~~~L~~vV~------------eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK 101 (641)
+.+.+|...+++.......+.+.+. .||+.|...|.+...+-..|-+-|.+++.|-
T Consensus 46 D~e~DY~~~R~nlh~q~q~~~~a~~~aLe~Ak~SesPRa~EVf~~Lm~~m~~~nk~Ll~lqK~MKdIt 113 (153)
T PF11053_consen 46 DLEDDYEYVRDNLHFQQQMGQDAAKIALEVAKNSESPRAYEVFAQLMKQMTDTNKKLLDLQKKMKDIT 113 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4577777777666666666666655 6888888888888887777777777777766
No 149
>PF15449 Retinal: Retinal protein
Probab=20.84 E-value=9.2e+02 Score=30.94 Aligned_cols=116 Identities=19% Similarity=0.232 Sum_probs=61.9
Q ss_pred HHHHHhHHHH---HHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccCcHHHHHHHHHhhhHHHHHHHHHH---
Q 006551 67 EVVHAYHTGF---NKAIQNYSQILRLFSESAE---SIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQ--- 137 (641)
Q Consensus 67 ~vV~eH~q~F---N~sI~sYs~I~~~IseSqe---~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~mL~iLd~--- 137 (641)
-+|.+|+.+| |.+|..|-.|+.-+.++.+ -++.|-..|.-|= +|+-+|..+-.+--++ +|.+
T Consensus 185 ~LVkAHq~aY~yL~~~lskYeail~~~~qa~qtq~~lq~mv~fl~l~f-------eEinqll~ei~~dGe~--ll~ev~~ 255 (1287)
T PF15449_consen 185 PLVKAHQHAYAYLHPSLSKYEAILCLAHQATQTQELLQPMVSFLLLRF-------EEINQLLGEIAKDGEV--LLKEVGG 255 (1287)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH--HHHHhcc
Confidence 4677776664 7899999999887766543 3444444443322 2222221111111110 1111
Q ss_pred -------HHHHhcchHHHHHHHhccCH-HHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHhHHHHHHHH
Q 006551 138 -------IEGIAKVPARIEKLIAGKQY-YAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKV 200 (641)
Q Consensus 138 -------IE~Lk~vP~kIE~lIseK~Y-l~Av~LL~~s~~ll~~~eL~~I~AL~dLRs~L~~qe~~L~d~L 200 (641)
..+-+.-||-+++|+. | ..-.++|.-+...|-. .+|.+-..||......|.++|
T Consensus 256 ~lawP~~k~~~~~qPdLLqQLLq---ytv~kmq~l~~tva~lt~------~~Le~s~~y~~s~a~~L~~kl 317 (1287)
T PF15449_consen 256 DLAWPSGKGEPQEQPDLLQQLLQ---YTVNKMQVLNGTVASLTS------SALEGSSSYLQSAASHLEEKL 317 (1287)
T ss_pred cccccccCCCCCCCchHHHHHHH---HHHHHHHHhhhhHHhhhh------hhhhhhHHHHHHHHHHHHhhh
Confidence 1223345777777763 3 2233344444444433 578888899988887777765
No 150
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=20.76 E-value=1.7e+03 Score=27.75 Aligned_cols=121 Identities=19% Similarity=0.203 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH--hhhHHHHHHHHHHH---------------------HHHhcch
Q 006551 89 LFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYR--SVTLRHIISLLDQI---------------------EGIAKVP 145 (641)
Q Consensus 89 ~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~--s~~~k~mL~iLd~I---------------------E~Lk~vP 145 (641)
.++.+..+++..++.|.+|-+. +...+||.+|-.+ ....++|-++-++. +.|...=
T Consensus 466 ~ls~A~~~Lr~AQe~L~eAL~~-gAs~eEI~rLm~eLR~A~~~ym~~LAeq~~~~~~~~~~p~~~~~~~~~~~~dL~~mm 544 (820)
T PF13779_consen 466 DLSDAERRLRAAQEALREALER-GASDEEIARLMQELREAMQDYMQALAEQAQRNPQQQDQPPDQGNSQMMSQQDLQRMM 544 (820)
T ss_pred cHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCcccccCcccchhhhccCHHHHHHHH
Confidence 3556666666666666666554 4455667666332 22233333332222 4455666
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHhHHHHHHHHHH--HHHHhHhcCC
Q 006551 146 ARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLE--DLHAHLYNRG 212 (641)
Q Consensus 146 ~kIE~lIseK~Yl~Av~LL~~s~~ll~~~eL~~I~AL~dLRs~L~~qe~~L~d~LvE--ELh~hLYlKs 212 (641)
++|+.++.+++--+|.++|.+=..++++=....=. +.-.++...+-..|-|++-+ +|.++-|...
T Consensus 545 d~ie~la~~G~~~~A~q~L~qlq~mmenmq~~~~q--~~~~~~~~q~m~~L~dl~r~Qq~L~D~tfr~~ 611 (820)
T PF13779_consen 545 DRIEELARSGRMDEARQLLEQLQQMMENMQNAQPQ--QQQQQEMQQAMEELGDLLRRQQQLMDETFRQL 611 (820)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999752222211 24444555555566666654 6778888654
No 151
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=20.66 E-value=5e+02 Score=27.97 Aligned_cols=129 Identities=18% Similarity=0.239 Sum_probs=0.0
Q ss_pred hHHHhhcCCCchhHHHHHHHHHHHHH--------------------HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHH
Q 006551 36 PHVVHILTSKDREGEVQILKDQNDII--------------------EEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAE 95 (641)
Q Consensus 36 ~~vL~lLss~~rE~e~~~Le~~~~~l--------------------~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe 95 (641)
+-|+-.|.......-...|+...-.+ ...|-+..+.++....+...+++. ...+++-..
T Consensus 83 ~~VL~~lgkeelqkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se-~rv~~el~~ 161 (268)
T PF11802_consen 83 PEVLLTLGKEELQKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSE-SRVFQELKT 161 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch-HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHh-----------------ccCcHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHhccCHH
Q 006551 96 SIKELKVDLAEAKRRL-----------------GTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYY 158 (641)
Q Consensus 96 ~I~~lK~~L~~aK~~L-----------------~~rr~eLk~Lw~~s~~~k~mL~iLd~IE~Lk~vP~kIE~lIseK~Yl 158 (641)
++..+|+.-..-...| ..++....+--.....+++||+.| |..+..+|..==--|....|+
T Consensus 162 K~~~~k~~~e~Ll~~LgeFLeeHfPlp~~~~~~~Kkk~~~~e~~~~~~~l~eilE~L--mN~l~~~p~DpYv~i~~~~WP 239 (268)
T PF11802_consen 162 KIEKIKEYKEKLLSFLGEFLEEHFPLPDEQGNAKKKKKGEDEPSAQLITLREILEIL--MNKLLDSPHDPYVKIDDSFWP 239 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcccchhhhhhccccccchhhhHHHHHHHHH--HHHhcCCCCCCceecCcccCh
Q ss_pred HHHHHHHHH
Q 006551 159 AAVQLHAQS 167 (641)
Q Consensus 159 ~Av~LL~~s 167 (641)
.++++|+++
T Consensus 240 pyie~LlR~ 248 (268)
T PF11802_consen 240 PYIELLLRS 248 (268)
T ss_pred HHHHHHHHc
No 152
>PF13514 AAA_27: AAA domain
Probab=20.54 E-value=1.8e+03 Score=28.06 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=9.5
Q ss_pred HHHHHHHHhHhhhC
Q 006551 15 YLREELARIEVSWV 28 (641)
Q Consensus 15 ~l~evL~~I~~eW~ 28 (641)
.+++-+.....+|.
T Consensus 698 ~~~~~~~~~~~~w~ 711 (1111)
T PF13514_consen 698 EAQEALEEWQEEWQ 711 (1111)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566677777777
No 153
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.31 E-value=1.1e+03 Score=25.60 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=14.6
Q ss_pred HHHHHHHHhccCCCCCCchHHHHHHHHH
Q 006551 164 HAQSALMLEREGLQTVGALQDVRSELTK 191 (641)
Q Consensus 164 L~~s~~ll~~~eL~~I~AL~dLRs~L~~ 191 (641)
|.++-+..+.-.-|+..=+..|+..+..
T Consensus 255 I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~ 282 (312)
T smart00787 255 IAEAEKKLEQCRGFTFKEIEKLKEQLKL 282 (312)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3444444544455555555566655544
No 154
>PRK10807 paraquat-inducible protein B; Provisional
Probab=20.19 E-value=1.1e+03 Score=27.57 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhcc
Q 006551 98 KELKVDLAEAKRRLGT 113 (641)
Q Consensus 98 ~~lK~~L~~aK~~L~~ 113 (641)
.++++.|.+.+..|..
T Consensus 476 ~~L~~TL~~l~~~l~~ 491 (547)
T PRK10807 476 ADMQKTLRELNRSMQG 491 (547)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4555555555555544
No 155
>PRK11637 AmiB activator; Provisional
Probab=20.11 E-value=1.2e+03 Score=25.94 Aligned_cols=47 Identities=13% Similarity=0.222 Sum_probs=28.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHH
Q 006551 77 NKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWY 123 (641)
Q Consensus 77 N~sI~sYs~I~~~IseSqe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~ 123 (641)
...-..+..+...|...+.++..+.+.+...+..|...++.|.++-.
T Consensus 85 ~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 85 SQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566666666666666666666666666666666655433
No 156
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=20.01 E-value=5.5e+02 Score=25.88 Aligned_cols=42 Identities=12% Similarity=0.129 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006551 62 EEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVD 103 (641)
Q Consensus 62 ~~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~lK~~ 103 (641)
-.+|...|++++.+....|..-..=+..+.+.+.+.+.+|..
T Consensus 111 f~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnK 152 (171)
T PF04799_consen 111 FARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNK 152 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444433
Done!