Query 006551
Match_columns 641
No_of_seqs 163 out of 186
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 18:36:03 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006551.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2178-2181//hhsearch_pdb/006551hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d2s_A Exocyst complex compone 1.0 1 1 37.8 8.4 70 136-205 13-86 (235)
2 1j6q_A Cytochrome C maturation 1.0 1 1 20.1 -2.1 69 517-595 30-102 (136)
3 1sr3_A APO-CCME; OB fold, beta 1.0 1 1 19.9 -2.3 70 516-595 25-97 (136)
4 1deq_A Fibrinogen (alpha chain 1.0 1 1 17.7 8.4 11 184-194 177-187 (390)
5 3ghg_A Fibrinogen alpha chain; 1.0 1 1 16.5 12.7 38 63-100 67-104 (562)
6 4akg_A Glutathione S-transfera 1.0 1 1 16.3 11.4 27 11-37 218-244 (2695)
7 3iyk_A VP5; icosahedral virus; 1.0 1 1 15.2 13.6 82 61-143 111-193 (526)
8 2jqq_A Conserved oligomeric go 1.0 1 1 15.1 2.7 28 58-85 13-40 (204)
9 3re2_A Predicted protein; meni 1.0 1 1 14.5 1.0 28 312-339 228-261 (472)
10 4ehp_B Catenin alpha-1; adhere 1.0 1 1 14.3 2.9 34 475-508 49-83 (111)
No 1
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=1.00 E-value=1 Score=37.76 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=58.5
Q ss_pred HHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97888760069999999426999999999999999702198----87776078999999969799999999998
Q 006551 136 DQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGL----QTVGALQDVRSELTKLRGVLFYKVLEDLH 205 (641)
Q Consensus 136 d~IE~Lk~vP~kIE~lIseK~Yl~Av~LL~~s~~lL~~~eL----~~I~AL~dLRs~L~~qe~~L~d~LIEELh 205 (641)
+.+.++...|+.|+-+|++++|-+|++++.+.-..+..-.- .+..++..++..+.+++..|.+.|++||.
T Consensus 13 ~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~ 86 (235)
T 2d2s_A 13 QRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL 86 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 04788871629889999997699999999999999872844456553678999999999999999999999987
No 2
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=1.00 E-value=1 Score=20.06 Aligned_cols=69 Identities=23% Similarity=0.312 Sum_probs=42.1
Q ss_pred HHHHHHHHHCCCCC-CCCCCCCCCCCCEEEEECC-CC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEH
Q ss_conf 79898875227998-4335899889410243236-65--45688884111244456787644347554322579961000
Q 006551 517 AAVQTARLASKAPS-KEKRDGSEDGLTFAFRFTD-AT--ISIPNQGADLIRQGWSRRGTNVLQEGYGTAAVLPEQGIYLA 592 (641)
Q Consensus 517 ~~~~~~~~~~~~~~-~~~~~~s~~g~~~~fr~~d-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (641)
...+..|++...-+ ...|+ ++|+.+.|+.|| .. +.|-|.|. -|.-=|+|-.|..+|. +-+.|.|.|
T Consensus 30 ~~g~~iRvgG~V~~GSv~r~--~~~~~v~F~vtD~~~~~v~V~Y~Gi---lPDlFrEGqgVVa~G~-----l~~~g~F~A 99 (136)
T 1j6q_A 30 EAGQRIRVGGMVTVGSMVRD--PNSLHVQFAVHDSLGGEILVTYDDL---LPDLFREGQGIVAQGV-----LGEDGKLAA 99 (136)
T ss_dssp CTTCEEEEEEEECTTCCEEC--TTSSCEEEEEECTTCCCEEEEECSC---CTTSCCSSSEEEEEEE-----ECSTTSEEE
T ss_pred CCCCEEEEEEEEECCCEEEC--CCCCEEEEEEECCCCCEEEEEECCC---CCCCCCCCCEEEEEEE-----ECCCCEEEE
T ss_conf 89987998579957937865--8998799999909998999997898---9844358994999999-----889995999
Q ss_pred HHH
Q ss_conf 122
Q 006551 593 ASI 595 (641)
Q Consensus 593 ~~~ 595 (641)
..|
T Consensus 100 ~eV 102 (136)
T 1j6q_A 100 TEV 102 (136)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 898
No 3
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=1.00 E-value=1 Score=19.85 Aligned_cols=70 Identities=24% Similarity=0.295 Sum_probs=43.3
Q ss_pred HHHHHHHHHHCCCCC-CCCCCCCCCCCCEEEEECCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEH
Q ss_conf 379898875227998-4335899889410243236654568--8884111244456787644347554322579961000
Q 006551 516 DAAVQTARLASKAPS-KEKRDGSEDGLTFAFRFTDATISIP--NQGADLIRQGWSRRGTNVLQEGYGTAAVLPEQGIYLA 592 (641)
Q Consensus 516 ~~~~~~~~~~~~~~~-~~~~~~s~~g~~~~fr~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (641)
....+..|++...-+ ...|+. +|+.+.|+.||..-+++ |.|. -|--=|+|-.|..+|. +-+.|.|.|
T Consensus 25 ~~~g~~iRvgG~V~~GSv~r~~--~~~~v~F~vtD~~~~v~V~Y~Gi---lPDlFrEGqgVVa~G~-----l~~~g~F~A 94 (136)
T 1sr3_A 25 PEVGQRLRVGGMVMPGSVQRDP--NSLKVTFTIYDAEGSVDVSYEGI---LPDLFREGQGVVVQGE-----LEKGNHILA 94 (136)
T ss_dssp CCTTSEEEEEEEECTTTCEECS--SSSEEEEEEECSSCEEEEEEESC---CCTTCCTTSEEEEEEE-----ECSSSEEEE
T ss_pred CCCCCEEEEEEEEECCCEEECC--CCCEEEEEEEECCCEEEEEECCC---CCCCCCCCCEEEEEEE-----ECCCCEEEE
T ss_conf 7899979984699579288769--99879999994992899997897---9845358994999999-----899995998
Q ss_pred HHH
Q ss_conf 122
Q 006551 593 ASI 595 (641)
Q Consensus 593 ~~~ 595 (641)
..|
T Consensus 95 ~eV 97 (136)
T 1sr3_A 95 KEV 97 (136)
T ss_dssp SSC
T ss_pred EEE
T ss_conf 898
No 4
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=1.00 E-value=1 Score=17.67 Aligned_cols=11 Identities=9% Similarity=0.145 Sum_probs=6.0
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999697
Q 006551 184 DVRSELTKLRG 194 (641)
Q Consensus 184 dLRs~L~~qe~ 194 (641)
|++.|-..|++
T Consensus 177 D~e~ye~qqKQ 187 (390)
T 1deq_A 177 DLEDYKNQQKQ 187 (390)
T ss_pred CHHHHHHHHHH
T ss_conf 68889999999
No 5
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=1.00 E-value=1 Score=16.48 Aligned_cols=38 Identities=8% Similarity=0.156 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999757889998782899999999999999999
Q 006551 63 EVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKEL 100 (641)
Q Consensus 63 ~~L~~vV~eH~q~FN~sI~sYs~I~~~IseSqe~I~~l 100 (641)
..|+..|.++.+.++.+-.-|..+.+.+...+.+..+.
T Consensus 67 NELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dN 104 (562)
T 3ghg_A 67 NKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNR 104 (562)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999987601019999999999999998763111
No 6
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=1.00 E-value=1 Score=16.32 Aligned_cols=27 Identities=19% Similarity=0.544 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 985889999998385107999984467
Q 006551 11 PEKAYLREELARIEVSWVAPRFDSLPH 37 (641)
Q Consensus 11 ~d~~~l~evL~~I~~eW~~~~Fd~i~~ 37 (641)
.....+++.|+.|+..|....|+..++
T Consensus 218 skE~~iE~~L~~i~~~W~~~~f~~~~~ 244 (2695)
T 4akg_A 218 SDEFVIEKSLNRIKKFWKEAQYEVIEH 244 (2695)
T ss_dssp ---CHHHHHHHHHHHHHTSCCCEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHCEEEEEEEE
T ss_conf 014458999999998864618999972
No 7
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=1.00 E-value=1 Score=15.19 Aligned_cols=82 Identities=6% Similarity=-0.056 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999975788999878289999999999-9999999999999998822492789999998646999999999788
Q 006551 61 IEEVVDEVVHAYHTGFNKAIQNYSQILRLFSES-AESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIE 139 (641)
Q Consensus 61 ie~~L~~vV~eH~q~FN~sI~sYs~I~~~IseS-qe~I~~lK~~L~~aK~~L~~rr~eLk~Lw~~s~~~k~iL~lLd~IE 139 (641)
+-.+....|-+.+...-..+..|.+....+.+. ++.+..+.+.|......+...+..|.+|...-++ ...++.-|+..
T Consensus 111 ~~~khn~~I~~k~g~~l~~v~~~~~~~~~~e~~e~~q~~~LekAl~s~~~i~~~e~~~l~~L~~AL~k-E~~~Rt~dE~~ 189 (526)
T 3iyk_A 111 VRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQK-EIGERTHAETV 189 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCHHHHH
T ss_conf 99998899999987899999999877544116678899999999999999999998679999999988-88750477999
Q ss_pred HHHC
Q ss_conf 8760
Q 006551 140 GIAK 143 (641)
Q Consensus 140 ~Lk~ 143 (641)
-+..
T Consensus 190 mi~~ 193 (526)
T 3iyk_A 190 MVKE 193 (526)
T ss_pred HHHH
T ss_conf 9999
No 8
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=15.08 Aligned_cols=28 Identities=7% Similarity=0.153 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999757889998782899
Q 006551 58 NDIIEEVVDEVVHAYHTGFNKAIQNYSQ 85 (641)
Q Consensus 58 ~~~ie~~L~~vV~eH~q~FN~sI~sYs~ 85 (641)
.+..+.+|-+-|+.+|.++.+--..|+.
T Consensus 13 sq~m~~~LLe~i~~~YddY~~fC~~f~~ 40 (204)
T 2jqq_A 13 SQKMVQTLLEQIRSNYDDYLTFSNTYTD 40 (204)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999987425889999987079
No 9
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=1.00 E-value=1 Score=14.45 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=16.7
Q ss_pred CCHHHHHH---HHHHHHHHHHCCH---HHHHHHH
Q ss_conf 62258999---9999999951993---8999999
Q 006551 312 APLHVKYL---QTMVECLCILGKV---AAAGAII 339 (641)
Q Consensus 312 ~~dsf~Yi---~~LlEsLn~LgKL---~~AldiI 339 (641)
.+|+..-. |-|+-.|-.+|.| |.|+-.|
T Consensus 228 ~tDs~El~~LQq~LLWLLyD~GhL~rYPmALgnL 261 (472)
T 3re2_A 228 TTDSIQLSQLQQELLWLLYDMGHIKTYPMAIANL 261 (472)
T ss_dssp TEECHHHHHHHHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHHCCHHHCCH
T ss_conf 6546999999999999998306264285353023
No 10
>4ehp_B Catenin alpha-1; adherens junctions, vinculin binding site, vinculin binding helix bundle, cell adhesion; 2.66A {Homo sapiens}
Probab=1.00 E-value=1 Score=14.28 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=23.4
Q ss_pred CCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 998765-5566641031289999999999888303
Q 006551 475 PDSEAS-VTGGYSIGFSMTVLQSECQQLICEILRA 508 (641)
Q Consensus 475 ~d~~~s-~~~~~~~l~~w~~~QsE~~~Ll~~yL~~ 508 (641)
.||.+. -..-=.++.-|+.+++++|.||.+|...
T Consensus 49 aDS~~Tr~e~RerIv~eCnavRqaLQdLlseym~~ 83 (111)
T 4ehp_B 49 ADSSCTRDDRRERIVAECNAVRQALQDLLSEYMGN 83 (111)
T ss_dssp CCCCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 72240357889899999999999999999999986
Done!