BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006553
         (641 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
           Translocation Intermediate
          Length = 802

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 147/378 (38%), Gaps = 80/378 (21%)

Query: 90  EKLPGVDILVCTADPILEPPAMKQYEDMKIQIESATEKGSISEELRSQHKGFLEWDHKVS 149
           E+LP VDILV         P+  +  DM     +A +       LR+     L  D    
Sbjct: 137 EELPTVDILV---------PSYNEPADMLSVTLAAAKNMIYPARLRTV---VLCDDGGTD 184

Query: 150 KQNHQPIVQIIIDGRDTNAVDNEGCQLPTLVYMAREKRPECPHNFKAGAMNALIRVSSEI 209
           ++   P  ++    ++      + C+   +VY  RE+      + KAG M+A +    E 
Sbjct: 185 QRCMSPDPELAQKAQERRRELQQLCRELGVVYSTRERN----EHAKAGNMSAAL----ER 236

Query: 210 SNGPIILNLDCDMYANDADAIREALCFFMDEKRGHEIAFVQHPQCF---DIISENDLYGH 266
             G +++  D D +    D +   + +F+++    ++  VQ P  F   D I  N   G 
Sbjct: 237 LKGELVVVFDAD-HVPSRDFLARTVGYFVEDP---DLFLVQTPHFFINPDPIQRNLALGD 292

Query: 267 YNLVENQVELA----GLGGYDAAMYCGTACFHRRDSLSGAKYSYDCRNINEARNKDKRSV 322
               EN++       GL  +  A +CG+A   RR                       R++
Sbjct: 293 RCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRR-----------------------RAL 329

Query: 323 DELEKASKVLASCSYEKDTQWGREMGLVYGYAVEDVVTGLTIQCRGWKSMHYNPERPAFL 382
           DE         +  +  +T              ED  T L I  RGWKS++ +  R    
Sbjct: 330 DE---------AGGFAGET------------ITEDAETALEIHSRGWKSLYID--RAMIA 366

Query: 383 GLAPVTLDNSLVQIKRWSEGLFQIFFSKYCPFIYGYGKIKLGARMGYCNYLLWAPLSLPT 442
           GL P T  + + Q  RW+ G+ Q+   K   F  G G   +  R+ Y N + +    L  
Sbjct: 367 GLQPETFASFIQQRGRWATGMMQMLLLKNPLFRRGLG---IAQRLCYLNSMSFWFFPLVR 423

Query: 443 LFYVIVPPVCLLHGISLF 460
           + +++ P + L  GI +F
Sbjct: 424 MMFLVAPLIYLFFGIEIF 441


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,682,355
Number of Sequences: 62578
Number of extensions: 694411
Number of successful extensions: 2036
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2034
Number of HSP's gapped (non-prelim): 3
length of query: 641
length of database: 14,973,337
effective HSP length: 105
effective length of query: 536
effective length of database: 8,402,647
effective search space: 4503818792
effective search space used: 4503818792
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)