Query 006553
Match_columns 641
No_of_seqs 318 out of 1900
Neff 6.7
Searched_HMMs 13730
Date Tue Mar 26 18:14:12 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006553.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2182-2186//hhsearch_scop/006553hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xhba2 c.68.1.17 (A:95-422) P 99.9 1.2E-22 8.8E-27 150.4 12.7 202 88-376 17-245 (328)
2 d1qg8a_ c.68.1.1 (A:) Spore co 99.7 2.6E-16 1.9E-20 112.5 13.3 214 93-389 1-220 (255)
3 d1omza_ c.68.1.15 (A:) Alpha-1 99.3 2.5E-13 1.8E-17 94.6 3.0 161 92-301 2-164 (265)
4 d2bo4a1 c.68.1.18 (A:2-382) Ma 98.5 1E-06 7.3E-11 55.0 10.9 110 97-239 3-119 (381)
5 d1fo8a_ c.68.1.10 (A:) N-acety 94.5 0.092 6.7E-06 25.3 12.1 161 92-301 1-176 (343)
6 d1w55a1 c.68.1.13 (A:3-207) Is 84.8 0.72 5.2E-05 20.0 4.7 51 178-239 64-114 (205)
7 d1fxoa_ c.68.1.6 (A:) RmlA (Rf 12.9 24 0.0018 10.8 5.6 85 156-250 49-137 (292)
8 d1w77a1 c.68.1.13 (A:75-300) 4 10.1 30 0.0022 10.3 8.9 44 195-240 83-126 (226)
9 d1kmma1 c.51.1.1 (A:326-424) H 7.6 41 0.003 9.4 1.2 16 93-108 2-17 (99)
10 d1pzta_ c.68.1.2 (A:) beta 1,4 6.5 51 0.0037 8.9 1.8 142 193-406 95-246 (271)
No 1
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.89 E-value=1.2e-22 Score=150.44 Aligned_cols=202 Identities=14% Similarity=0.064 Sum_probs=132.8
Q ss_pred CCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCHH
Q ss_conf 04999932899825899999802565699999999999507886888731158643344334578845279876289916
Q 006553 88 YEEKLPGVDILVCTADPILEPPAMKQYEDMKIQIESATEKGSISEELRSQHKGFLEWDHKVSKQNHQPIVQIIIDGRDTN 167 (641)
Q Consensus 88 ~~~~~P~VdV~I~t~nE~~e~~~~~~y~~~~~~I~~a~~~~~~p~~~~~~~~~f~~w~~~~~~~~h~~~I~VldD~~~~~ 167 (641)
++++.|.|+|+||||||..+. +.++|+++++ +++|. ...+|.|+||+++|+
T Consensus 17 ~~~~~P~vSIIIp~yNe~~~~--------l~~~l~Si~~-qt~~~--------------------~~~EIIvVDdgS~d~ 67 (328)
T d1xhba2 17 YPDNLPTTSVVIVFHNEAWST--------LLRTVHSVIN-RSPRH--------------------MIEEIVLVDDASERD 67 (328)
T ss_dssp CCSCCCCEEEEEEESSCCHHH--------HHHHHHHHHH-SSCGG--------------------GEEEEEEEECSCCCG
T ss_pred CCCCCCCEEEEEECCCCCHHH--------HHHHHHHHHH-CCCCC--------------------CCEEEEEEECCCCHH
T ss_conf 899999889999226781799--------9999999996-47777--------------------972999997999703
Q ss_pred HH----HH-HCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 88----63-05889948999905799999998089999999861567899889995699888966899999998653359
Q 006553 168 AV----DN-EGCQLPTLVYMAREKRPECPHNFKAGAMNALIRVSSEISNGPIILNLDCDMYANDADAIREALCFFMDEKR 242 (641)
Q Consensus 168 ~~----~~-~~~~~p~l~Yi~R~~rp~~~~~~KAGaLN~~l~~s~~~t~~~~ililDaD~~~~~p~~L~~~v~~f~d~~~ 242 (641)
.. +. .....+.+++++.++ ..|.++|.|.|++. ++||+|+.+|+|.++ +|++|.+++..|.+.+
T Consensus 68 ~~~~~l~~~~~~~~~~i~vi~~~~-----n~G~~~a~N~Gi~~----a~gd~i~flD~D~~~-~p~~l~~l~~~~~~~~- 136 (328)
T d1xhba2 68 FLKRPLESYVKKLKVPVHVIRMEQ-----RSGLIRARLKGAAV----SRGQVITFLDAHCEC-TAGWLEPLLARIKHDR- 136 (328)
T ss_dssp GGTHHHHHHHHSSSSCEEEEECSS-----CCCHHHHHHHHHHH----CCSSEEEEEESSEEE-CTTCHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHCCCCEEEEEECC-----CCCCHHHHHHHHHH----HHCCEEEECCCCCCC-CHHHHHHHHHHHHCCC-
T ss_conf 579999999985689709997324-----43216887899986----311002201765566-7369999999996389-
Q ss_pred CCEEEEEECCCCCCCCC-------CCCCCCC-------C-HHHHHHHHHHHHHHC----CCCEECCCCEEEEHHHHCCCC
Q ss_conf 96299991674112378-------6632222-------0-246788898864205----980000343448536421764
Q 006553 243 GHEIAFVQHPQCFDIIS-------ENDLYGH-------Y-NLVENQVELAGLGGY----DAAMYCGTACFHRRDSLSGAK 303 (641)
Q Consensus 243 ~~~va~VQ~pq~f~n~~-------~~d~~~~-------~-~~~~~~~~~~g~d~~----~~~~~~Gtg~~~RR~aL~~~~ 303 (641)
. +.|..+....+.+ .....+. . ............... ..+..+|+++++||+++.+
T Consensus 137 --~-~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~-- 211 (328)
T d1xhba2 137 --R-TVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQE-- 211 (328)
T ss_dssp --T-EEEEEEEEEECSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHHH--
T ss_pred --C-EEEECCEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCEECCEEEEEEHHHHHH--
T ss_conf --7-47741044661676022157753334433122322245624543202345566632341322111322999998--
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC---CCHHHHHHHHHHCCCEEEEECC
Q ss_conf 665321100001223103689999611110244445787662013458875---6529999999985985997199
Q 006553 304 YSYDCRNINEARNKDKRSVDELEKASKVLASCSYEKDTQWGREMGLVYGYA---VEDVVTGLTIQCRGWKSMHYNP 376 (641)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~ig~~a~~v~~c~Ye~~t~wG~~~G~~~~sv---tED~~t~~~l~~~Gwrs~y~~~ 376 (641)
+| ||+++-. .||+++++|+..+||++.|.+.
T Consensus 212 ---------------------vG---------------------gfDe~~~~~g~ED~Dl~~R~~~~G~~i~~~p~ 245 (328)
T d1xhba2 212 ---------------------IG---------------------TYDAGMDIWGGENLEISFRIWQCGGTLEIVTC 245 (328)
T ss_dssp ---------------------TT---------------------SCCTTSCTTCCCCSHHHHHHHHTTCEEEEEEE
T ss_pred ---------------------HC---------------------CCCCCCCCCCCHHHHHHHHHHHHCCEEEEECC
T ss_conf ---------------------18---------------------99987767675699999999980991999377
No 2
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=99.69 E-value=2.6e-16 Score=112.45 Aligned_cols=214 Identities=13% Similarity=0.063 Sum_probs=135.6
Q ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 93289982589999980256569999999999950788688873115864334433457884527987628991688630
Q 006553 93 PGVDILVCTADPILEPPAMKQYEDMKIQIESATEKGSISEELRSQHKGFLEWDHKVSKQNHQPIVQIIIDGRDTNAVDNE 172 (641)
Q Consensus 93 P~VdV~I~t~nE~~e~~~~~~y~~~~~~I~~a~~~~~~p~~~~~~~~~f~~w~~~~~~~~h~~~I~VldD~~~~~~~~~~ 172 (641)
|.|+|+|||||++.- ++++++++++ ++|+ + ..|.|+||++.|++.+..
T Consensus 1 P~vSiiip~yN~~~~---------l~~~l~Si~~-Qt~~--------~--------------~eiivvdd~S~d~t~~~l 48 (255)
T d1qg8a_ 1 PKVSVIMTSYNKSDY---------VAKSISSILS-QTFS--------D--------------FELFIMDDNSNEETLNVI 48 (255)
T ss_dssp CCEEEEEEESSCTTT---------HHHHHHHHHT-CSCC--------C--------------EEEEEEECSCCHHHHHHH
T ss_pred CEEEEEEECCCCHHH---------HHHHHHHHHH-CCCC--------C--------------EEEEEEECCCCCCHHHHH
T ss_conf 979999962798899---------9999999982-8899--------8--------------599999898973189999
Q ss_pred C--CCCCCEEEEECCCCC---CCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 5--889948999905799---99999808999999986156789988999569988896689999999865335996299
Q 006553 173 G--CQLPTLVYMAREKRP---ECPHNFKAGAMNALIRVSSEISNGPIILNLDCDMYANDADAIREALCFFMDEKRGHEIA 247 (641)
Q Consensus 173 ~--~~~p~l~Yi~R~~rp---~~~~~~KAGaLN~~l~~s~~~t~~~~ililDaD~~~~~p~~L~~~v~~f~d~~~~~~va 247 (641)
. ...+++.++.-+... .....++++|+|.|++. ++||+|+.+|+|..+ +|+++.+++..|... ++++
T Consensus 49 ~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~a~N~gi~~----a~g~~i~~lD~Dd~~-~p~~l~~~~~~~~~~---~~~~ 120 (255)
T d1qg8a_ 49 RPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIEM----AEGEYITYATDDNIY-MPDRLLKMVRELDTH---PEKA 120 (255)
T ss_dssp GGGGGSTTEEEEECCCCSHHHHHSSCHHHHHHHHHHHH----CCCSEEEEEETTEEE-CTTHHHHHHHHHHHC---TTCC
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCC----CCCCCCCCCCCCCCC-CCCHHHHHHHHHHHC---CCCC
T ss_conf 99643012221111234543223210000122222234----566634333665320-025588999999849---8777
Q ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-EECCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99167411237866322220246788898864205980-00034344853642176466532110000122310368999
Q 006553 248 FVQHPQCFDIISENDLYGHYNLVENQVELAGLGGYDAA-MYCGTACFHRRDSLSGAKYSYDCRNINEARNKDKRSVDELE 326 (641)
Q Consensus 248 ~VQ~pq~f~n~~~~d~~~~~~~~~~~~~~~g~d~~~~~-~~~Gtg~~~RR~aL~~~~~~~~~~~~~~~~~~~~~~~~~ig 326 (641)
+|.+....++.+.+.......... .....++.. .+.+++.++||+++.. ++
T Consensus 121 ~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~ 172 (255)
T d1qg8a_ 121 VIYSASKTYHLNENRDIVKETVRP-----AAQVTWNAPCAIDHCSVMHRYSVLEK-----------------------VK 172 (255)
T ss_dssp EEEEEEEEEEEC---CEEEEEEEC-----CCSCBSCCTTTSCGGGEEEETHHHHH-----------------------HH
T ss_pred EEEECCEEEEECCCCCEEEEECCC-----CHHHHHHHCCCCCCHHHHHHHHHHHH-----------------------HH
T ss_conf 686310353307887476530364-----04566642123453067889999999-----------------------87
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCH
Q ss_conf 961111024444578766201345887565299999999859859971999772124589998
Q 006553 327 KASKVLASCSYEKDTQWGREMGLVYGYAVEDVVTGLTIQCRGWKSMHYNPERPAFLGLAPVTL 389 (641)
Q Consensus 327 ~~a~~v~~c~Ye~~t~wG~~~G~~~~svtED~~t~~~l~~~Gwrs~y~~~~~~a~~g~aP~~l 389 (641)
+. .++|.. . ... ....||.+..+++. ++++..++++.. ..+-..|.++
T Consensus 173 ~~-----~~~~~~-----~--~~~-~~~~~D~dl~lrl~-~~~~~~~i~~~l-~~~~~~~~s~ 220 (255)
T d1qg8a_ 173 EK-----FGSYWD-----E--SPA-FYRIGDARFFWRVN-HFYPFYPLDEEL-DLNYITDQSI 220 (255)
T ss_dssp HH-----HSSSSC-----C--CGG-GSTTHHHHHHHHHT-TTCCBEEEEEEE-EEEEEC----
T ss_pred HH-----HCCCCC-----C--CCH-HCCHHHHHHHHHHH-CCCCEEEECCCE-EEEEECCCCC
T ss_conf 76-----178764-----5--501-20100599999998-379899956878-9999869831
No 3
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.32 E-value=2.5e-13 Score=94.61 Aligned_cols=161 Identities=10% Similarity=0.014 Sum_probs=92.4
Q ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHH
Q ss_conf 99328998258999998025656999999999995078868887311586433443345788452798762899168863
Q 006553 92 LPGVDILVCTADPILEPPAMKQYEDMKIQIESATEKGSISEELRSQHKGFLEWDHKVSKQNHQPIVQIIIDGRDTNAVDN 171 (641)
Q Consensus 92 ~P~VdV~I~t~nE~~e~~~~~~y~~~~~~I~~a~~~~~~p~~~~~~~~~f~~w~~~~~~~~h~~~I~VldD~~~~~~~~~ 171 (641)
+-+.+|+|||||++.. +++.|+++.+ ++||. .+|.|.||++++.....
T Consensus 2 ~~~~tvii~tyn~~~~---------l~~~l~sl~~-q~~~~----------------------~~iiV~d~~sd~~~~~i 49 (265)
T d1omza_ 2 LDSFTLIMQTYNRTDL---------LLRLLNHYQA-VPSLH----------------------KVIVVWNNVGEKGPEEL 49 (265)
T ss_dssp TTCEEEEEEESSCHHH---------HHHHHHHHTT-STTEE----------------------EEEEEECCTTCCCTHHH
T ss_pred CCCEEEEEECCCCHHH---------HHHHHHHHHC-CCCCC----------------------EEEEEECCCCCCCHHHH
T ss_conf 8868999972799899---------9999999973-89959----------------------69999898999609999
Q ss_pred --HCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf --058899489999057999999980899999998615678998899956998889668999999986533599629999
Q 006553 172 --EGCQLPTLVYMAREKRPECPHNFKAGAMNALIRVSSEISNGPIILNLDCDMYANDADAIREALCFFMDEKRGHEIAFV 249 (641)
Q Consensus 172 --~~~~~p~l~Yi~R~~rp~~~~~~KAGaLN~~l~~s~~~t~~~~ililDaD~~~~~p~~L~~~v~~f~d~~~~~~va~V 249 (641)
.....+..++... + +.|+++|+|.+++. ++||+|+.+|+|..+ .|++|++++..+.+.+ +.. |
T Consensus 50 ~~~~~~~~~~~~~~~-~-----~~g~~~a~n~~~~~----a~ge~i~~lD~D~~~-~~~~l~~l~~~~~~~~---~~~-v 114 (265)
T d1omza_ 50 WNSLGPHPIPVIFKP-Q-----TANKMRNRLQVFPE----VETNAVLMVDDDTLI-SAQDLVFAFSIWQQFP---DQI-I 114 (265)
T ss_dssp HHHTCCCSSCEEEEE-C-----SSCCGGGGGSCCTT----CCSSEEEEECTTEEE-CHHHHHHHHHHHTTST---TSE-E
T ss_pred HHHHCCCCEEEEEEC-C-----CCCCHHHHHHHHHH----CCCCEEEEECCCCCC-CHHHHHHHHHHHHHCC---CCC-E
T ss_conf 987535653898723-7-----88823454254886----896789996765577-8799999999998588---742-2
Q ss_pred ECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCCEEEEHHHHCC
Q ss_conf 1674112378663222202467888988642059800003434485364217
Q 006553 250 QHPQCFDIISENDLYGHYNLVENQVELAGLGGYDAAMYCGTACFHRRDSLSG 301 (641)
Q Consensus 250 Q~pq~f~n~~~~d~~~~~~~~~~~~~~~g~d~~~~~~~~Gtg~~~RR~aL~~ 301 (641)
+...................... ..............|++.++||+++..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~~~~ 164 (265)
T d1omza_ 115 GFVPRKHVSTSSGIYSYGGFELQ--TPGPGNGDQYSMVLIGASFFNSKYLEL 164 (265)
T ss_dssp ESCEEEEEEEETTEEEEECTTSC--CCSSSSSCCBSEECTTEEEEETHHHHH
T ss_pred ECCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCEECCCEEEECHHHHHH
T ss_conf 11332001267764212443224--554344553200024316851789999
No 4
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]}
Probab=98.48 E-value=1e-06 Score=55.04 Aligned_cols=110 Identities=16% Similarity=-0.012 Sum_probs=65.2
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH--C-
Q ss_conf 9982589999980256569999999999950788688873115864334433457884527987628991688630--5-
Q 006553 97 ILVCTADPILEPPAMKQYEDMKIQIESATEKGSISEELRSQHKGFLEWDHKVSKQNHQPIVQIIIDGRDTNAVDNE--G- 173 (641)
Q Consensus 97 V~I~t~nE~~e~~~~~~y~~~~~~I~~a~~~~~~p~~~~~~~~~f~~w~~~~~~~~h~~~I~VldD~~~~~~~~~~--~- 173 (641)
|.||++||+.+. +..++ .+.+ .+| +..+|.|.||++++...+.. .
T Consensus 3 VVIP~~NEe~~i--------l~~~v-~~~a--~~P---------------------~~~eIvVvDdsSdDtt~~i~~~~~ 50 (381)
T d2bo4a1 3 VVFPFKHEHPEV--------LLHNV-RVAA--AHP---------------------RVHEVLCIGYERDQTYEAVERAAP 50 (381)
T ss_dssp EEEECCSSCHHH--------HHHHH-HHHH--HST---------------------TCCEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHH--------HHHHH-HHHH--HCC---------------------CEEEEEEECCCCCCCHHHHHHHHH
T ss_conf 999727885889--------99999-9997--589---------------------814999986999875999999852
Q ss_pred ----CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf ----889948999905799999998089999999861567899889995699888966899999998653
Q 006553 174 ----CQLPTLVYMAREKRPECPHNFKAGAMNALIRVSSEISNGPIILNLDCDMYANDADAIREALCFFMD 239 (641)
Q Consensus 174 ----~~~p~l~Yi~R~~rp~~~~~~KAGaLN~~l~~s~~~t~~~~ililDaD~~~~~p~~L~~~v~~f~d 239 (641)
..-..+.-.-+++-+. .+.+|..++..++......++||+++.+|||....+|+.+.+++....+
T Consensus 51 ~~~~~~~~~v~~~~~~~l~~-~~~GKG~g~~~A~~~g~~~a~gd~lvflDADl~~~~pe~i~~L~~~i~~ 119 (381)
T d2bo4a1 51 EISRATGTPVSVRLQERLGT-LRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADF 119 (381)
T ss_dssp HHHHHHSCCEEEEECCCCSS-SSSSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHHT
T ss_pred HHHCCCCCCCHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 30011332100111002354-6578848899999999970888889997587676779999999998763
No 5
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=94.54 E-value=0.092 Score=25.30 Aligned_cols=161 Identities=9% Similarity=-0.008 Sum_probs=84.4
Q ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHH
Q ss_conf 99328998258999998025656999999999995078868887311586433443345788452798762899168863
Q 006553 92 LPGVDILVCTADPILEPPAMKQYEDMKIQIESATEKGSISEELRSQHKGFLEWDHKVSKQNHQPIVQIIIDGRDTNAVDN 171 (641)
Q Consensus 92 ~P~VdV~I~t~nE~~e~~~~~~y~~~~~~I~~a~~~~~~p~~~~~~~~~f~~w~~~~~~~~h~~~I~VldD~~~~~~~~~ 171 (641)
+|-+-|+|-+||=+ . ++++++++++. -| . ... ..|+|..||.+++..++
T Consensus 1 ~~viPVlv~a~NRP-~---------l~r~LesLlk~--~p--------~---------~~~--~~I~Vs~DG~~~~~~~~ 49 (343)
T d1fo8a_ 1 LAVIPILVIACDRS-T---------VRRCLDKLLHY--RP--------S---------AEL--FPIIVSQDCGHEETAQV 49 (343)
T ss_dssp CCCCCEEEEESSCT-T---------HHHHHHHHHHH--CS--------C---------TTT--SCEEEEECTTCHHHHHH
T ss_pred CCCCCEEEEECCHH-H---------HHHHHHHHHHC--CC--------C---------CCC--CCEEEEECCCCHHHHHH
T ss_conf 98304899975778-8---------99999999842--75--------5---------668--53899964995457999
Q ss_pred HCCCCCCEEEEECCCCCCCCCC---CH-HHHHH------HHHHHCCCCCCCCEEEEECCCCCCCCHHHH---HHHHHHHH
Q ss_conf 0588994899990579999999---80-89999------999861567899889995699888966899---99999865
Q 006553 172 EGCQLPTLVYMAREKRPECPHN---FK-AGAMN------ALIRVSSEISNGPIILNLDCDMYANDADAI---REALCFFM 238 (641)
Q Consensus 172 ~~~~~p~l~Yi~R~~rp~~~~~---~K-AGaLN------~~l~~s~~~t~~~~ililDaD~~~~~p~~L---~~~v~~f~ 238 (641)
...-.-.+.++...+..+.++. .| -||.. .|+...-..-+.+.++++.-|..+ .|||+ ..++..+.
T Consensus 50 v~~~~~~v~~I~~~~~~~~~~~~~~~k~~~n~giarhy~~AL~~~F~~~~~~~~IiLEDDl~~-spdFf~y~~~~l~~~~ 128 (343)
T d1fo8a_ 50 IASYGSAVTHIRQPDLSNIAVQPDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEV-APDFFEYFQATYPLLK 128 (343)
T ss_dssp HHTTGGGSEEEECSCCCCCCCCTTCGGGHHHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEE-CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCEECCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEE-EHHHHHHHHHHHHHHH
T ss_conf 999888988730775456354211320331167888999999987411577649999257504-0779999999999972
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHCCCCEECCCCEEEEHHHHCC
Q ss_conf 335996299991674112378663222--202467888988642059800003434485364217
Q 006553 239 DEKRGHEIAFVQHPQCFDIISENDLYG--HYNLVENQVELAGLGGYDAAMYCGTACFHRRDSLSG 301 (641)
Q Consensus 239 d~~~~~~va~VQ~pq~f~n~~~~d~~~--~~~~~~~~~~~~g~d~~~~~~~~Gtg~~~RR~aL~~ 301 (641)
+ ++.+..|-+ .|.+....+. +....+| ...++.|=|=+..|+.-.+
T Consensus 129 ~---D~~i~~IS~----wNdnG~~~~~~~~~~~~ly----------rs~~fpg~GW~~~r~~W~e 176 (343)
T d1fo8a_ 129 A---DPSLWCVSA----WNDNGKEQMVDSSKPELLY----------RTDFFPGLGWLLLAELWAE 176 (343)
T ss_dssp H---CTTEEEEES----CCTTCBGGGSCTTCTTCEE----------EESSCCCSSEEEEHHHHHH
T ss_pred C---CCCEEEEEC----CCCCCCCCCCCCCCCCEEE----------EECCCCCHHHHEEHHHHHH
T ss_conf 6---997799966----6567886656689875188----------6068872332221988987
No 6
>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]}
Probab=84.77 E-value=0.72 Score=19.96 Aligned_cols=51 Identities=4% Similarity=0.101 Sum_probs=35.2
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHC
Q ss_conf 48999905799999998089999999861567899889995699888966899999998653
Q 006553 178 TLVYMAREKRPECPHNFKAGAMNALIRVSSEISNGPIILNLDCDMYANDADAIREALCFFMD 239 (641)
Q Consensus 178 ~l~Yi~R~~rp~~~~~~KAGaLN~~l~~s~~~t~~~~ililDaD~~~~~p~~L~~~v~~f~d 239 (641)
.+.++.-. ......+-++++. .+.++|++.|||.-.-.++.+.+.+.....
T Consensus 64 ~~~~v~Gg-------~~r~~Sv~~gl~~----~~~~~VlIhd~~rP~i~~~~i~~li~~~~~ 114 (205)
T d1w55a1 64 NYEFIEGG-------DTRAESLKKALEL----IDSEFVMVSDVARVLVSKNLFDRLIENLDK 114 (205)
T ss_dssp SSEEEECC-------SSHHHHHHHHHTT----CCSSEEEEEETTCTTCCHHHHHHHHTTGGG
T ss_pred CCCCCCCC-------CCHHHHHHHHHHH----HHHCCEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf 22212454-------3101444203565----531203651257615759898887765431
No 7
>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=12.85 E-value=24 Score=10.81 Aligned_cols=85 Identities=21% Similarity=0.144 Sum_probs=52.6
Q ss_pred EEEEEECCCCHH-HHHHHC--CCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 279876289916-886305--889-9489999057999999980899999998615678998899956998889668999
Q 006553 156 IVQIIIDGRDTN-AVDNEG--CQL-PTLVYMAREKRPECPHNFKAGAMNALIRVSSEISNGPIILNLDCDMYANDADAIR 231 (641)
Q Consensus 156 ~I~VldD~~~~~-~~~~~~--~~~-p~l~Yi~R~~rp~~~~~~KAGaLN~~l~~s~~~t~~~~ililDaD~~~~~p~~L~ 231 (641)
.|.++-.....+ ..+..+ ... -.+.|+.-++ | .|-|||+..+.... .+.++++++-+|.+. +.+ +.
T Consensus 49 ei~ii~~~~~~~~i~~~~~~~~~~g~~I~y~~q~~-~----~Gta~ai~~a~~~i---~~~~~~lil~dD~~~-~~d-l~ 118 (292)
T d1fxoa_ 49 EILIISTPQDTPRFQQLLGDGSNWGLDLQYAVQPS-P----DGLAQAFLIGESFI---GNDLSALVLGDNLYY-GHD-FH 118 (292)
T ss_dssp EEEEEECTTTHHHHHHHHTTSGGGTCEEEEEECSS-C----CCGGGHHHHTHHHH---TTSEEEEEETTEEEE-CTT-HH
T ss_pred EEEEEECCCCHHHHHHHHCCCCCCCEEEEECCCCC-C----CCHHHHHHHHHHHC---CCCCEEEEECCCCCC-CCC-HH
T ss_conf 89999576779999999651552684899823899-7----74789998644423---887638997564224-869-89
Q ss_pred HHHHHHHCCCCCCEEEEEE
Q ss_conf 9999865335996299991
Q 006553 232 EALCFFMDEKRGHEIAFVQ 250 (641)
Q Consensus 232 ~~v~~f~d~~~~~~va~VQ 250 (641)
..+.++.+.+.+..+...+
T Consensus 119 ~ll~~h~~~~~~~~i~~~~ 137 (292)
T d1fxoa_ 119 ELLGSASQRQTGASVFAYH 137 (292)
T ss_dssp HHHHHHHTCCSSEEEEEEE
T ss_pred HHHHHHHHCCCCCEEEEEE
T ss_conf 9999998379992899998
No 8
>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}
Probab=10.14 E-value=30 Score=10.26 Aligned_cols=44 Identities=7% Similarity=-0.043 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 0899999998615678998899956998889668999999986533
Q 006553 195 KAGAMNALIRVSSEISNGPIILNLDCDMYANDADAIREALCFFMDE 240 (641)
Q Consensus 195 KAGaLN~~l~~s~~~t~~~~ililDaD~~~~~p~~L~~~v~~f~d~ 240 (641)
.+.+.-+++... ..+.++|++.|+|.-...++.+.+++....+.
T Consensus 83 r~~sv~~~l~~~--~~~~~~Vli~d~~~P~i~~~~i~~l~~~~~~~ 126 (226)
T d1w77a1 83 RQDSVYSGLQEI--DVNSELVCIHDSARPLVNTEDVEKVLKDGSAV 126 (226)
T ss_dssp HHHHHHHHHHTS--CTTCSEEEEEETTCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--CCCCCCCEECCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 355556667653--02553202213323036687754345544324
No 9
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.64 E-value=41 Score=9.43 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=12.8
Q ss_pred CCEEEEEECCCCCCCC
Q ss_conf 9328998258999998
Q 006553 93 PGVDILVCTADPILEP 108 (641)
Q Consensus 93 P~VdV~I~t~nE~~e~ 108 (641)
|.|||+|...+|+...
T Consensus 2 p~vdv~vi~~~~~~~~ 17 (99)
T d1kmma1 2 PVVDIYLVASGADTQS 17 (99)
T ss_dssp CSCSEEEECCSTTHHH
T ss_pred CCCEEEEEECCHHHHH
T ss_conf 9887999977879999
No 10
>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.49 E-value=51 Score=8.88 Aligned_cols=142 Identities=13% Similarity=0.092 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 98089999999861567899889995699888966899999998653359962999916741123786632222024678
Q 006553 193 NFKAGAMNALIRVSSEISNGPIILNLDCDMYANDADAIREALCFFMDEKRGHEIAFVQHPQCFDIISENDLYGHYNLVEN 272 (641)
Q Consensus 193 ~~KAGaLN~~l~~s~~~t~~~~ililDaD~~~~~p~~L~~~v~~f~d~~~~~~va~VQ~pq~f~n~~~~d~~~~~~~~~~ 272 (641)
--|+..+|.|..........++++..|-|+.|. .+... +...+ .|..+.. ..+.+ .+
T Consensus 95 FNRg~llNiGf~~a~~~~~~~~~ifHDVDllP~-~~~~~----Y~~~~----------~p~h~~~--~~~~~------~~ 151 (271)
T d1pzta_ 95 FNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPM-NDHNT----YRCFS----------QPRHISV--AMDKF------GF 151 (271)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCEEEEECTTEEES-BTTSC----CSCCS----------SCEECCC--EEGGG------TT
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC-CCCCC----CCCCC----------CCCCEEE--ECCCC------CC
T ss_conf 245556607899963235864799964786755-45443----43566----------6742254--03555------66
Q ss_pred HHHHHHHHHCCCCEECCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 88988642059800003434485364217646653211000012231036899996111102444457876620134588
Q 006553 273 QVELAGLGGYDAAMYCGTACFHRRDSLSGAKYSYDCRNINEARNKDKRSVDELEKASKVLASCSYEKDTQWGREMGLVYG 352 (641)
Q Consensus 273 ~~~~~g~d~~~~~~~~Gtg~~~RR~aL~~~~~~~~~~~~~~~~~~~~~~~~~ig~~a~~v~~c~Ye~~t~wG~~~G~~~~ 352 (641)
......+.|-...+.++.+.. |+ ||- +..| ||
T Consensus 152 --------~~~y~~~~GGv~~~~k~~f~k-----------------------IN---------Gfs-N~yw----GW--- 183 (271)
T d1pzta_ 152 --------SLPYVQYFGGVSALSKQQFLS-----------------------IN---------GFP-NNYW----GA--- 183 (271)
T ss_dssp --------SCSCTTCCCSEEEEEHHHHHH-----------------------TT---------SCC-SCCC----SS---
T ss_pred --------CCCCCCCCCEEEEECHHHHHH-----------------------CC---------CCC-CCCC----CC---
T ss_conf --------555233025355300999965-----------------------58---------997-2443----77---
Q ss_pred CCCCHHHHHHHHHHCCCEEEEECCCCCCC----------CCCCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 75652999999998598599719997721----------2458999899999775440200567
Q 006553 353 YAVEDVVTGLTIQCRGWKSMHYNPERPAF----------LGLAPVTLDNSLVQIKRWSEGLFQI 406 (641)
Q Consensus 353 svtED~~t~~~l~~~Gwrs~y~~~~~~a~----------~g~aP~~l~~~~~Qr~RWa~G~~qi 406 (641)
-.||-++..|+...|.+..-.+....-. .-..|..+..+..++.||....+.-
T Consensus 184 -GgEDddl~~R~~~~g~~i~R~~~~~~~y~~l~H~~d~~~~~n~~r~~~l~~~~~~~~~dGLns 246 (271)
T d1pzta_ 184 -GGEDDDIYNRLAFRGMSVSRPNAVIGKTRMIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNS 246 (271)
T ss_dssp -SSHHHHHHHHHHHTTCCCBCCCTTTTEEEECCCSSCCCCCCCCCCCCCHHHHHHHTTTSSGGG
T ss_pred -CCCCHHHHHHHHHCCCEEECCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf -534699999999849869716877565255645687344645279999998764066799801
Done!