Query 006554
Match_columns 640
No_of_seqs 253 out of 840
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 00:58:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006554.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006554hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2001 Gamma-tubulin complex, 100.0 1E-80 2.2E-85 650.4 49.6 543 3-613 131-714 (734)
2 KOG2000 Gamma-tubulin complex, 100.0 1.9E-79 4.2E-84 677.5 38.7 619 3-639 230-862 (879)
3 KOG2065 Gamma-tubulin ring com 100.0 6.8E-68 1.5E-72 529.9 35.7 543 13-636 36-670 (679)
4 PF04130 Spc97_Spc98: Spc97 / 100.0 6E-67 1.3E-71 587.5 43.0 482 3-504 21-542 (542)
5 KOG4344 Uncharacterized conser 99.9 1.3E-25 2.8E-30 233.0 26.1 505 13-528 331-1044(1121)
6 PF10824 DUF2580: Protein of u 65.2 39 0.00084 27.9 7.9 73 1-79 1-73 (100)
7 KOG2000 Gamma-tubulin complex, 52.7 27 0.00059 41.1 6.1 122 365-505 589-710 (879)
8 PF05597 Phasin: Poly(hydroxya 47.3 37 0.00081 30.3 4.9 45 584-628 75-119 (132)
9 KOG4344 Uncharacterized conser 39.0 14 0.0003 41.0 1.0 123 51-183 450-578 (1121)
10 PF13060 DUF3921: Protein of u 33.1 86 0.0019 22.3 3.8 45 462-506 7-52 (58)
11 PF08673 RsbU_N: Phosphoserine 33.0 1.9E+02 0.004 23.2 6.3 49 474-527 25-74 (77)
No 1
>KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton]
Probab=100.00 E-value=1e-80 Score=650.45 Aligned_cols=543 Identities=25% Similarity=0.468 Sum_probs=451.3
Q ss_pred CceeecCCcCCChhHHHHHHHHhhhhHhHHHHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 006554 3 DGYCLSDLVKVPRATRVMVRKLCELGWLFRKVRGYISESMDRFPAEDVGTVGQAFCAALQDELLEYYKLLAVLEAQAMNP 82 (640)
Q Consensus 3 ~~f~i~~~~~~~~~~~~ll~~l~~lG~~~~~l~~fv~~~~~~~~~~~~g~~~~A~~~al~~~L~~y~~~l~~lE~~~~~~ 82 (640)
-.|.|.|+ +.-+.|+++++++++|.+|..++.||++. +....|.|.+|+|+|+++.|.+|+.+|+++|++.+
T Consensus 131 ~~F~v~~~--fd~~ir~la~eilpl~~yy~~v~~fie~~----s~f~~G~vn~alaaAlr~ll~dyy~li~qlE~e~R-- 202 (734)
T KOG2001|consen 131 IFFMVLPR--FDLAIRELAEEILPLASYYLLVQDFIEET----SFFEYGQVNHALAAALRELLYDYYELISQLEQELR-- 202 (734)
T ss_pred cceeeccc--hhHHHHHHHHHHHHHHHHHHHHHHHHhcc----chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 45888888 77799999999999999999999999985 23389999999999999999999999999999986
Q ss_pred CCccccccCCCCcccHHHHHHHhhchHHHHHHHHHHHHHh--cccCchhHHHHHHHH--cccCCHHHHHHHHHHHHHHhH
Q 006554 83 IPLVSESAGSGNYLSLRRLSVWFAEPMVKMRLMAVLVDKC--RVLRGGAMAGAIHLH--AQHGDLLVHEFMKRLLRRVCS 158 (640)
Q Consensus 83 ~~~~~~~~~~~~~ltL~~l~~~l~~~~~~L~~l~~l~~~~--~~~~G~~lLs~l~~~--~~~Gd~~~~~~~~~ll~~~~~ 158 (640)
.+.+||+.|+.+++|++..|+.++..+... +..+||++|+.+++. ...||+.++.++.++++.+++
T Consensus 203 ----------~~~lslq~L~~y~qP~m~~m~~l~~~~~~~~~~~~~gg~vls~l~~~~~~~~Gd~~a~~ll~~l~r~as~ 272 (734)
T KOG2001|consen 203 ----------TNRLSLQDLWFYMQPMMRSMRRLAVAATTTVKKVCKGGAVLSLLQSSIKENLGDRSARMLLKKLLRNASQ 272 (734)
T ss_pred ----------hccccHHHHHHHHhhhHHHHHHHHHHHhhhhccccCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 357899999999999999999877766543 567999999999986 478999999999999999999
Q ss_pred HHHHHHHHHHhcCeecCCCCcceEeeccC--------CCcccccCceeEecCCCCCcCCHHHHHHHHHhhHHHHHHHHhh
Q 006554 159 PLFEMVRSWVLEGELEDIFAEFFVVGHPV--------KAESLWRDGYRLHSGMLPSFISQSLAQRILRTGKSINFLRVCC 230 (640)
Q Consensus 159 p~~~~L~~Wl~~G~L~Dp~~EFFI~~~~~--------~~~~~W~~~y~l~~~~vP~Fl~~~~a~kIl~~GKsl~~Lr~~~ 230 (640)
||++|+..|++.|.++|||+||||.++.. ..+.||.++|+|+++.+|.|+. +.|+|||.|||++|++|+|+
T Consensus 273 ~Y~~mLe~Wi~~Gii~Dpy~EFmi~d~~~~k~~l~ed~~d~YW~~RY~ir~dqiP~fL~-~~adkIL~tGKYLNVvReC~ 351 (734)
T KOG2001|consen 273 PYCTMLEEWIYQGIINDPYQEFMIYDNLITKEDLPEDYTDKYWDQRYTIRKDQIPGFLL-SEADKILRTGKYLNVVRECG 351 (734)
T ss_pred hHHHHHHHHHhcccccCchHhHhhhhcchhhhcCchhhhHHHHHHhheechhhcchHHH-HHHHHHHHhhhHHHHHHHhC
Confidence 99999999999999999999999998751 2468999999999999999996 79999999999999999999
Q ss_pred cCCCcchhHHHHHHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhcCCcchHHHH
Q 006554 231 DDRGWADAATEAATAAGTSTRRGSLGYGETDALETLVIEAAKRIDKHLLDVIYKRYKFREHCLAIKRYLLLGQGDFVQYL 310 (640)
Q Consensus 231 ~~~~~~~~~~e~~~~~~~~~~~~~l~~~~~~~l~~~I~~~~~~~s~~l~~~l~~~~~L~~hL~~lr~~~Ll~~Gdf~~~f 310 (640)
.....+....+.. .+..+ +...++..|+++|..+|..++++|+++++|..||+.+|+||||.+|||+.+|
T Consensus 352 ~~v~~p~~~n~~~---------~~~~~-~e~~~~e~I~~ay~~A~~~lL~ll~~e~dL~~hLrslK~YfLldQgdF~~~F 421 (734)
T KOG2001|consen 352 KIVTIPQSSNEIN---------DPADL-MESNHEEYIKKAYEFANEILLKLLFEEYDLVGHLRSLKHYFLLDQGDFFVTF 421 (734)
T ss_pred ccCCCCcchhhhc---------ccccc-chhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchHHHH
Confidence 8766543321110 11112 2378999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCCccccchhhHHHHHHHHHh-hhcCCCCCchhhhchheeecc---------------C-------C-----
Q 006554 311 MDIVGPELSEPANTISSFKLAGLLESAIR-SSNAQYDDPDILDRLRVKLMP---------------H-------G----- 362 (640)
Q Consensus 311 ~~~l~~~L~~~~~~~~~~~L~~~L~~ai~-~s~~~~d~~~~~~~l~v~~~~---------------~-------~----- 362 (640)
++.+.++|.+|...+++.+|+.+|+.|+| .|.+.. || .-+.|.|.+.| . +
T Consensus 422 ld~~~eEL~K~v~~i~p~kLqsLL~laLr~~s~a~~-Dp-~k~~L~i~~~~~~L~~ql~~~l~ie~~e~~ans~~dP~~~ 499 (734)
T KOG2001|consen 422 LDKAEEELTKNVENISPEKLQSLLDLALREQSEAAN-DP-MKEDLKICVDPTDLITQLSHILAIEPEEESANSQADPLEH 499 (734)
T ss_pred HHHHHHHHhcchhhcCHHHHHHHHHHHHHhhhcccC-Cc-hhhheeeeecHhhHHHHHHHHHhcCccccccccccCcchh
Confidence 99999999999999999999999999999 444433 33 22233333211 0 0
Q ss_pred CCCccceEEEEEeecCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHHHHHHHHH
Q 006554 363 TGDRGWDVFSLEYDARVPLDTLFTESVMARYLKIFNFLWKLRRVEHALIGAWKAMKPNCITSNSFTKLQHAVKLQLLSTL 442 (640)
Q Consensus 363 ~~~~~~d~~~L~y~v~~PL~~i~t~~~m~~Y~~iF~fL~~lk~~~~~L~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~l 442 (640)
-..+|+++|+|+|+|||||++||++.+|.+||.|||+++.+|++++.|+.+|..... .+.+.. ....+.
T Consensus 500 l~lsGlE~faf~Y~vkwPLSlIIsrkal~kYQmLfR~lf~lkhVerqL~~~W~~~~~----~r~~~~-------~~~q~~ 568 (734)
T KOG2001|consen 500 LDLSGLEAFAFDYEVKWPLSLIISRKALIKYQMLFRYLFYLKHVERQLCETWQSHSK----ARSSNT-------KGAQIV 568 (734)
T ss_pred ccccchhhheeeeccCCceeeeEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhccch-------HHHHHH
Confidence 134799999999999999999999999999999999999999999999999996432 111111 124677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Q 006554 443 RRCQVLWDEMNHFVTNLQYYIMFEVLEVSWSNFSNEMEAAKDLDDLLAAHEKYLHSIFEKSLLGERSQSLFKSLFVLFDL 522 (640)
Q Consensus 443 ~~~~~lr~~m~~fv~~l~~Y~~~~VIe~~w~~l~~~l~~~~dld~l~~~H~~fL~~i~~~~~L~~~~~~l~~~l~~il~~ 522 (640)
|..+.||++|++||++|.+|++++||||+|..|.+.+++++++|+++..|+.||+.|+++|+|+.. +.+++.+.++..+
T Consensus 569 r~s~~LR~RMl~fiqsi~~Y~~~eViEp~W~~l~~~l~~a~~vD~Vl~~he~fld~CLk~ClL~~~-~~llk~~~kL~~v 647 (734)
T KOG2001|consen 569 RASFLLRQRMLNFIQSIEYYMTQEVIEPNWHSLEKCLKNARNVDEVLNEHEGFLDTCLKRCLLTLS-PLLLKSFSKLYKV 647 (734)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhccCCh-HHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999999999973 4688999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCCCcCcchhhhHhhhhhH-hHHHHHHHHHHHHHHH
Q 006554 523 ILRFRSHADRLYEGIRELQARTMESSLSSRDKKKSSRQTNDMHTKPGSWLSDGRKALTQRAGE-FLRNMEQELDATANEY 601 (640)
Q Consensus 523 ~~~F~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~f 601 (640)
|+.||++++.+.... ..+.. ..+.+. +++ +...++... .++++.+.++...+.|
T Consensus 648 Cl~f~~~~q~~~~~~-~~~~~------------------~~~~~~-~~~-----d~~~k~~~t~li~~leei~~~~~~~f 702 (734)
T KOG2001|consen 648 CLMFCSFTQKLTQSD-PTDEE------------------KNSVGH-PQF-----DEGRKEDDTLLISKLEEIISNADKNF 702 (734)
T ss_pred HHHHHHHHHHHhccc-chhhh------------------hccccc-cch-----hhhhhhhhHHHHHHHHHHHHHhHHHH
Confidence 999999988775431 00000 000000 111 111111111 2567778888899999
Q ss_pred HHHHHHHHHhcC
Q 006554 602 TSLLEVFLAQLP 613 (640)
Q Consensus 602 ~~~~~~fl~~l~ 613 (640)
.+.+.+|+..|+
T Consensus 703 ~~~l~~L~~rls 714 (734)
T KOG2001|consen 703 RDCLKNLLQRLS 714 (734)
T ss_pred HHHHHHHHHHcc
Confidence 999999988887
No 2
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton]
Probab=100.00 E-value=1.9e-79 Score=677.53 Aligned_cols=619 Identities=41% Similarity=0.689 Sum_probs=535.0
Q ss_pred CceeecCCcCCChhHHHHHHHHhhhhHhHHHHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 006554 3 DGYCLSDLVKVPRATRVMVRKLCELGWLFRKVRGYISESMDRFPAEDVGTVGQAFCAALQDELLEYYKLLAVLEAQAMNP 82 (640)
Q Consensus 3 ~~f~i~~~~~~~~~~~~ll~~l~~lG~~~~~l~~fv~~~~~~~~~~~~g~~~~A~~~al~~~L~~y~~~l~~lE~~~~~~ 82 (640)
++|++.-.+.++.+...++..+.++|++|.++..|+....... ....|++.|||+++++++|++|+..++.+..++.-.
T Consensus 230 ~~~~~k~~~~~~~~~~~l~~~lSelg~l~~~~~~~~~~~~l~~-~~~~g~v~qaf~~~l~~elq~y~~~v~~~~s~~~~~ 308 (879)
T KOG2000|consen 230 ECFVVKGPVHLPRGISGLLYLLSELGVLYQRVSTFSDQLVLDN-PYCIGLVGQAFTAELSDELQYYYALVRSLLTSLSRN 308 (879)
T ss_pred hhhhhhccccchhhHHHHHHHHHHHhHHHHhhhhhcchhhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHhccccceec
Confidence 3456655566788999999999999999999999998843221 225899999999999999999999999999887432
Q ss_pred CCccccccCCCCcccHHHHHHHhhchHHHHHHHHHHHHHhcccCchhHHHHHHHHcccCCHHHHHHHHHHHHHHhHHHHH
Q 006554 83 IPLVSESAGSGNYLSLRRLSVWFAEPMVKMRLMAVLVDKCRVLRGGAMAGAIHLHAQHGDLLVHEFMKRLLRRVCSPLFE 162 (640)
Q Consensus 83 ~~~~~~~~~~~~~ltL~~l~~~l~~~~~~L~~l~~l~~~~~~~~G~~lLs~l~~~~~~Gd~~~~~~~~~ll~~~~~p~~~ 162 (640)
.+....+ .....+||.+++.|+..+..+|++++.+++.|+..+||.++..++.+..+|++.++.++..+|...+.|+.+
T Consensus 309 ~~~~~~~-~~~~~~~l~r~la~~~~~~~rl~i~~~l~e~~~~~~g~~l~~~~~~f~~~g~~~i~~i~~~lL~~~~~p~~~ 387 (879)
T KOG2000|consen 309 KIGIVNL-KLVSEVTLLRLLAWIYEPGIRLQILCKLVEHCQVPKGGKLLSAVHEFLTHGDLYVHPIVFSLLHSSCSPYYR 387 (879)
T ss_pred ccccchh-hhhhhhhHHHHHHHHhhcchhhhHHHHHHHHhcccCCCcchHHHHHHHHhCCCcccHHHHHHhhhcchHHHH
Confidence 2211000 111227999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeecCCCCcceEeecc----CCCcccccCceeEecCCCCCcCCHHHHHHHHHhhHHHHHHHHhhcCCCcchh
Q 006554 163 MVRSWVLEGELEDIFAEFFVVGHP----VKAESLWRDGYRLHSGMLPSFISQSLAQRILRTGKSINFLRVCCDDRGWADA 238 (640)
Q Consensus 163 ~L~~Wl~~G~L~Dp~~EFFI~~~~----~~~~~~W~~~y~l~~~~vP~Fl~~~~a~kIl~~GKsl~~Lr~~~~~~~~~~~ 238 (640)
|+..|++.|++.|+|+||||..++ +..+.+|+++|.++.+++|.||+.++|.||+.|||++|||+.||++..|.+.
T Consensus 388 ~i~~wi~~G~l~D~y~EFfV~~~~~~~~~~~d~lw~~~~~l~~~~lP~Fi~~~~a~kI~l~GKsinfL~~~c~e~~w~~e 467 (879)
T KOG2000|consen 388 MLRNWLLEGELRDTYGEFFVAENPDPGSVKDDRLWHDGYKLRYEMLPSFIPMELAQKILLIGKSINFLRDCCNEQTWSDE 467 (879)
T ss_pred HHHHHHHcCcccccccceEEeccCCCCccccccccccccccchhhcccccCHHHHHHHHHhhhHHHHHHHhccccccccc
Confidence 999999999999999999999987 5678999999999999999999999999999999999999999999999876
Q ss_pred HHHHHHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhcCCcchHHHHHHhccccc
Q 006554 239 ATEAATAAGTSTRRGSLGYGETDALETLVIEAAKRIDKHLLDVIYKRYKFREHCLAIKRYLLLGQGDFVQYLMDIVGPEL 318 (640)
Q Consensus 239 ~~e~~~~~~~~~~~~~l~~~~~~~l~~~I~~~~~~~s~~l~~~l~~~~~L~~hL~~lr~~~Ll~~Gdf~~~f~~~l~~~L 318 (640)
..+.+...+..++ .+.++....++..|+++|....+++.++|.+.+++.+|+.++|+|+|+|+|||++.+|+.+.+.|
T Consensus 468 ~~~~~~~~~s~~~--~l~~~~~~~l~~~v~~ay~e~inhl~~ll~~~~~l~dh~~a~k~ylllGqgDfid~lme~~~n~l 545 (879)
T KOG2000|consen 468 IDAKASVEESSTR--DLEYASDVGLLGSVSEAYSEIVNHLNDILEEVISLLDHNQALKRYLLLGQSDFIDVLMEEKKNIL 545 (879)
T ss_pred hhHHHHHhhhhhh--hhccCCChhHHHHHhhhhccchHHHHHHHHHHhhHHHHHHHHHHHHHhccchHHHHHHHhhcchh
Confidence 6554433332222 56788889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccchhhHHHHHHHHHhhh-cCCCCCchhhhchheeeccCCCCCccceEEEEEeecCCCcccccCHHHHHHHHHHH
Q 006554 319 SEPANTISSFKLAGLLESAIRSS-NAQYDDPDILDRLRVKLMPHGTGDRGWDVFSLEYDARVPLDTLFTESVMARYLKIF 397 (640)
Q Consensus 319 ~~~~~~~~~~~L~~~L~~ai~~s-~~~~d~~~~~~~l~v~~~~~~~~~~~~d~~~L~y~v~~PL~~i~t~~~m~~Y~~iF 397 (640)
.+|++.+.+++|++.+++|+|++ |++||++++++|+++++++.++|++|||.|+++|.+..|+++|+|+.++.+|-+||
T Consensus 546 ~~p~~tl~~~~lt~~ldsaiR~s~na~yd~~~vL~Rld~~~~~~~~gd~gwdvfsl~y~v~~p~s~v~t~~~~~~ylrif 625 (879)
T KOG2000|consen 546 ARPRDTLPEHKLTGVLDSAVRSSLNAQYDDRDVLNRLDVRVLKLSHGDDGWDVFSLDYAVDGPLSLVLTRELMLKYLRVF 625 (879)
T ss_pred cCcchhhhHhHHHHHHHHHHhhhhccccCChhhhhhhhhHhhhccCCcccceeeeecceecccHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHhhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 006554 398 NFLWKLRRVEHAL-IGAWKAMKPNCITSNSFTKLQHAVKLQLLSTLRRCQVLWDEMNHFVTNLQYYIMFEVLEVSWSNFS 476 (640)
Q Consensus 398 ~fL~~lk~~~~~L-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~lr~~m~~fv~~l~~Y~~~~VIe~~w~~l~ 476 (640)
+|||++||+++.| .++|+.++..|...+...... .+.+...+++|+.+..+|.||+.++|+|+.++|||++|++|.
T Consensus 626 ~flwrlkR~e~~L~~~i~k~~m~~~~~~~~~~~~~---i~~~~~~~~r~h~~~~E~~~f~sq~q~y~~f~vie~~wk~l~ 702 (879)
T KOG2000|consen 626 NFLWKLKRVEFLLELHIWKMLMKDCNVAKRDRLLK---IPEISCALHRCHILTNEMNHFISQMQYYILFEVIECSWKELS 702 (879)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccccchhcc---hHHHHhhhhhhhhHHHHHHHHHHhhhhccccchhhcChHHHH
Confidence 9999999999999 789997654333212211110 124467889999999999999999999999999999999999
Q ss_pred HHhhhCCC-HHHHHHHHHHHHHHHHHhccCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhccccc
Q 006554 477 NEMEAAKD-LDDLLAAHEKYLHSIFEKSLLGERSQ--SLFKSLFVLFDLILRFRSHADRLYEG-IRELQARTMESSLSSR 552 (640)
Q Consensus 477 ~~l~~~~d-ld~l~~~H~~fL~~i~~~~~L~~~~~--~l~~~l~~il~~~~~F~~~~~~l~~~-~~~~~~~~~~~~~~~~ 552 (640)
.+++++.+ +|..+++|+-|++.|.-+|++.++.. .+...+..+++.|+.+......++.. ..+++.|..++...
T Consensus 703 ~~~~~a~~~ld~~~eah~~~~~ti~i~~~l~~~~~~~s~~~~l~~l~e~Il~~~~~~~~~~~~~~~~ls~~~~~s~~~-- 780 (879)
T KOG2000|consen 703 KKMEPARNPLDFQLEAHRPFLDTISIRGILQEKASVESIEHSLSALLELILNLAELQSSFYFGGIRELSARLQESNPE-- 780 (879)
T ss_pred HHHhhccCchHHHHhhccccccceeecccccCcccchhhHHhHHHHHHHHhhhhcccccccccccchhhhhcccccch--
Confidence 99999999 99999999999999999999988543 48899999999999999999998887 44666665322100
Q ss_pred ccccccccccccCCCCCCcCcchhhhH--hhhhhHhHHH--HHHHHHHHHHHHHHHHHHHHHhcCcCCCCCchhhHhhhc
Q 006554 553 DKKKSSRQTNDMHTKPGSWLSDGRKAL--TQRAGEFLRN--MEQELDATANEYTSLLEVFLAQLPVQQHVDLKFLLFRLD 628 (640)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~f~~~~~~fl~~l~~~~~~~l~~L~~rld 628 (640)
.......|.|+..+.... .+...+|.+. ++...+.+.+.|...+.+|+..|+.+++++++++..|+|
T Consensus 781 ---------~~~~~~~~~~~v~ts~~~~~~~~a~~f~~~~~~~~~~~~~~~~y~~~~~~~~~lL~~~~~~~~~l~~~r~~ 851 (879)
T KOG2000|consen 781 ---------ESSFSDRGSWGVGTSLLPLLNQRAKEFLQSIHMCSGYDSLAKMYIFSVLAFLLLLPSFGDQELLLLSFRLD 851 (879)
T ss_pred ---------hhhhhhccCCCcCCCcchhhHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhcccCCCHHHHHHHhhcC
Confidence 111223477766554332 3567778877 677899999999999999999999999999999999999
Q ss_pred cccccccCCCC
Q 006554 629 FTEFYTRLRPS 639 (640)
Q Consensus 629 fn~~Y~~~~~~ 639 (640)
||+||..+++.
T Consensus 852 f~E~~~~~~~~ 862 (879)
T KOG2000|consen 852 FTERYKWRDVF 862 (879)
T ss_pred HHHHHHhhhcc
Confidence 99999877653
No 3
>KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton]
Probab=100.00 E-value=6.8e-68 Score=529.89 Aligned_cols=543 Identities=23% Similarity=0.375 Sum_probs=418.2
Q ss_pred CChhHHHHHHHHhhhhHhHHHHHHHH---hhhccCC-----------CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006554 13 VPRATRVMVRKLCELGWLFRKVRGYI---SESMDRF-----------PAEDVGTVGQAFCAALQDELLEYYKLLAVLEAQ 78 (640)
Q Consensus 13 ~~~~~~~ll~~l~~lG~~~~~l~~fv---~~~~~~~-----------~~~~~g~~~~A~~~al~~~L~~y~~~l~~lE~~ 78 (640)
|+|++|+++++|+++|..|+.+.+|. ++.++.. +..-.|.|..|||.+|...|++|+..|..||+.
T Consensus 36 ihPsEr~i~~rliklg~~Y~e~~rFtswIrsvTsH~~~r~~~~s~q~~~~lhg~Ylra~a~Gi~~~L~~Yr~ail~lEq~ 115 (679)
T KOG2065|consen 36 IHPSEREIFMRLIKLGKVYQEVERFTSWIRSVTSHSSGRKSDTSGQLPDSLHGYYLRALAKGIEMALEEYRAAILRLEQY 115 (679)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccccccCCCccchHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999997777665 3332211 223578999999999999999999999999999
Q ss_pred hcCCCCccccccCCCCcccHHHHHHHhhchHHHHHHHHHHHHHh--cccCchhHHHHHHHHcccCCHHHHHHHHHHHHHH
Q 006554 79 AMNPIPLVSESAGSGNYLSLRRLSVWFAEPMVKMRLMAVLVDKC--RVLRGGAMAGAIHLHAQHGDLLVHEFMKRLLRRV 156 (640)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ltL~~l~~~l~~~~~~L~~l~~l~~~~--~~~~G~~lLs~l~~~~~~Gd~~~~~~~~~ll~~~ 156 (640)
+.. .+..+|..+...+......+..+..++.++ .+.+||+||..||+. -+|.|.+|..+.+++..|
T Consensus 116 ~Lg-----------~~~~sls~V~~~L~~ff~Lfp~~~~vi~eI~~~~irGcqlL~~l~k~-HCg~p~ir~~l~~~l~~~ 183 (679)
T KOG2065|consen 116 CLG-----------NERNSLSYVYNALYAFFPLFPFMRNVITEIHVLNIRGCQLLHNLHKQ-HCGHPDIRLELAIKLKPV 183 (679)
T ss_pred HhC-----------CCCchHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhHHHHHHHHh-ccCCCcHHHHHHHHHhhh
Confidence 874 345678888888887777777888888765 578999999999997 489999999999999999
Q ss_pred hHHHHHHHHHHHhcCeecCCCCcceEeecc---CC--------Ccccc-----------cC----ceeEecCCCCCcCCH
Q 006554 157 CSPLFEMVRSWVLEGELEDIFAEFFVVGHP---VK--------AESLW-----------RD----GYRLHSGMLPSFISQ 210 (640)
Q Consensus 157 ~~p~~~~L~~Wl~~G~L~Dp~~EFFI~~~~---~~--------~~~~W-----------~~----~y~l~~~~vP~Fl~~ 210 (640)
..+++++|..||.+|.|.||++||||+..+ ++ .+++- -. .|...-...|.|.+-
T Consensus 184 h~vmy~qLaaWml~Gvl~D~H~EFFIK~q~~~~~d~ss~~ee~~e~L~vhsLTgi~l~~l~D~rl~~E~nm~a~~~~~sl 263 (679)
T KOG2065|consen 184 HNVMYSQLAAWMLFGVLDDVHSEFFIKFQPTDAVDGSSFSEEATESLLVHSLTGIALKNLEDYRLQYEVNMSALPGFFSL 263 (679)
T ss_pred HHHHHHHHHHHHHHHhhcccchheEEeccCCCCCCcccCchhhhhhhhhcccchhhhhchhhhhHHHHHhhhccccceee
Confidence 999999999999999999999999998544 10 00000 01 122223456888887
Q ss_pred HHHHHHHHhhHHHHHHHHhhcCC-------CcchhHHHHHHhcCCccccccccC------------------CCchhHHH
Q 006554 211 SLAQRILRTGKSINFLRVCCDDR-------GWADAATEAATAAGTSTRRGSLGY------------------GETDALET 265 (640)
Q Consensus 211 ~~a~kIl~~GKsl~~Lr~~~~~~-------~~~~~~~e~~~~~~~~~~~~~l~~------------------~~~~~l~~ 265 (640)
..+.++|.+|+...+.....+.. +.+....|.-.+. ..+++.- -..-.||.
T Consensus 264 ~~~s~~l~v~~~~s~~~~~R~~~~i~F~~~~~~~~e~eld~dl----t~G~ll~~~Ed~f~aml~dLk~~~~f~~~~fE~ 339 (679)
T KOG2065|consen 264 VLASKVLFVGQTVSVFKMGRNVKVINFKTDPLAAKEAELDSDL----TYGQLLSGREDEFFAMLVDLKNEDTFNVFRFEK 339 (679)
T ss_pred eccccceeeccchHHHhhccceeeeeccCCchhhHHhhccccc----hhhhhcCCChHHHHHHHHhhhcCCceeeeeHHH
Confidence 78899999999998887543211 1111111110000 0011100 02346899
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhcCCcchHHHHHHhcccccCCCccccchhhHHHHHHHHHhhhcCCC
Q 006554 266 LVIEAAKRIDKHLLDVIYKRYKFREHCLAIKRYLLLGQGDFVQYLMDIVGPELSEPANTISSFKLAGLLESAIRSSNAQY 345 (640)
Q Consensus 266 ~I~~~~~~~s~~l~~~l~~~~~L~~hL~~lr~~~Ll~~Gdf~~~f~~~l~~~L~~~~~~~~~~~L~~~L~~ai~~s~~~~ 345 (640)
.|++..+.|+.+||++..++-+|..|++++|+|||||+|||++.|++.+...|..|+.....++++..++.|-..+.+
T Consensus 340 vVd~ir~~va~hLw~l~V~e~DL~gqlk~iKDffLLgrGeffq~F~~~~~~~m~tpp~~~tE~dv~v~FqlaAtkt~~-- 417 (679)
T KOG2065|consen 340 VVDDIRNYVAAHLWELAVNEVDLEGQLKLIKDFFLLGRGEFFQEFCSQMVGTMETPPEERTEKDVTVSFQLAATKTGI-- 417 (679)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhHHhHHHHHHHHHHhcccHHHHHHHHHHHHHhhCCchhhcccccchhhhhhhhhccc--
Confidence 999999999999999999999999999999999999999999999999999999998877788888888877654432
Q ss_pred CCchhhhchheeeccC--------------------CCCCccceEEEEEeecCCCcccccCHHHHHHHHHHHHHHHHHHH
Q 006554 346 DDPDILDRLRVKLMPH--------------------GTGDRGWDVFSLEYDARVPLDTLFTESVMARYLKIFNFLWKLRR 405 (640)
Q Consensus 346 d~~~~~~~l~v~~~~~--------------------~~~~~~~d~~~L~y~v~~PL~~i~t~~~m~~Y~~iF~fL~~lk~ 405 (640)
+|..++++++.++... .....|||++.|.|+|+||++++|||.++++||.||++|+++||
T Consensus 418 ~dDkyl~~~sL~~~~~grs~~aD~~~~~tGka~ltsdtsvdGWdAl~L~Y~v~WPl~llFtp~~~e~yn~VF~yLl~irr 497 (679)
T KOG2065|consen 418 TDDKYLDKFSLICQRSGRSEPADTSDFNTGKAFLTSDTSVDGWDALSLKYEVEWPLNLLFTPTTIERYNNVFRYLLIIRR 497 (679)
T ss_pred cccccccceEEEecccCCCCccchhhhccCcccccCCCCccchhhhceeeEeccchheeechhHHHHHHHHHHHHHHHHH
Confidence 3444667776655321 12457999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhCCC
Q 006554 406 VEHALIGAWKA-MKPNCITSNSFTKLQHAVKLQLLSTLRRCQVLWDEMNHFVTNLQYYIMFEVLEVSWSNFSNEMEAAKD 484 (640)
Q Consensus 406 ~~~~L~~~w~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~lr~~m~~fv~~l~~Y~~~~VIe~~w~~l~~~l~~~~d 484 (640)
.++.|+++|.. |...+..+. ..++ .+.++ |.+|+.|.++++++|||++.||||++|..++..|+...|
T Consensus 498 ~Q~Elq~~WA~qm~r~h~~s~----q~~d-----~~~I~--WRlRnhmaFl~~NlQyYiQVDVlESQf~~L~~~I~s~~D 566 (679)
T KOG2065|consen 498 YQYELQRVWAKQMWRAHSASD----QPPD-----NKIIT--WRLRNHMAFLLNNLQYYIQVDVLESQFGILMNVIKSRSD 566 (679)
T ss_pred HHHHHHHHHHHHHHHHHhhcc----CCCC-----Cccch--HHHHHHHHHHHhhhheeeeehhHHHHHHHHHHHhcchhh
Confidence 99999999974 322221111 0011 11222 779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccc
Q 006554 485 LDDLLAAHEKYLHSIFEKSLLGERSQSLFKSLFVLFDLILRFRSHADRLYEGIRELQARTMESSLSSRDKKKSSRQTNDM 564 (640)
Q Consensus 485 ld~l~~~H~~fL~~i~~~~~L~~~~~~l~~~l~~il~~~~~F~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (640)
++.|..+|..||.+++.+|||.. .|+..+|.+|+++|.+||+++.. ..
T Consensus 567 Fe~i~~aH~~fLsnllsqsFll~--~pV~~~L~~i~~lC~~Fcn~~~Q---------~~--------------------- 614 (679)
T KOG2065|consen 567 FEVIQRAHTVFLSNLLSQSFLLN--EPVYGTLLKIFGLCEKFCNHMTQ---------TK--------------------- 614 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHhhc---------cC---------------------
Confidence 99999999999999999999987 68999999999999999975321 00
Q ss_pred CCCCCCcCcchhhhHhhhhhHhHHHHHHHHHHHHHHHH---HHHHHHHHhcCc-CCCCCchhhHhhhccccccccC
Q 006554 565 HTKPGSWLSDGRKALTQRAGEFLRNMEQELDATANEYT---SLLEVFLAQLPV-QQHVDLKFLLFRLDFTEFYTRL 636 (640)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~---~~~~~fl~~l~~-~~~~~l~~L~~rldfn~~Y~~~ 636 (640)
+..+ ++ .+.++.+.++|. +.+.+.|....+ |-.++|+.|+.|||||.||+..
T Consensus 615 ----~P~d-~~---------------~~el~~l~e~F~~qs~sL~~iL~svk~~q~~~~L~qlLLRLdfN~~y~aA 670 (679)
T KOG2065|consen 615 ----DPSD-DL---------------EDELDQLNESFGVQSASLIQILVSVKSAQCLGPLSQLLLRLDFNCWYSAA 670 (679)
T ss_pred ----CCcc-cc---------------hHHHHHHHHHhhhhHHHHHHHHHHccccccccHHHHHHHHhchhHHHHhc
Confidence 0000 01 223455566663 445556666554 4567799999999999999873
No 4
>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin. The SPB functions as the microtubule-organising centre in yeast, with the microtubule cytoskeleton playing an essential role in chromosome segregation, cellular organisation and vesicle trafficking in eukaryotic cells. In most cells, the centrosome is the primary microtubule-organising centre that nucleates and organises microtubules. Gamma-tubulin localises to centrosomes and is required for microtubule nucleation. In Saccharomyces cerevisiae, gamma-tubulin forms a stable complex with Spc97 and Spc98 [].; GO: 0000226 microtubule cytoskeleton organization, 0000922 spindle pole, 0005815 microtubule organizing center; PDB: 3RIP_A.
Probab=100.00 E-value=6e-67 Score=587.45 Aligned_cols=482 Identities=32% Similarity=0.584 Sum_probs=344.0
Q ss_pred CceeecCCc---CCChhHHHHHHHHhhhhHhHHHHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006554 3 DGYCLSDLV---KVPRATRVMVRKLCELGWLFRKVRGYISESMDRFPAEDVGTVGQAFCAALQDELLEYYKLLAVLEAQA 79 (640)
Q Consensus 3 ~~f~i~~~~---~~~~~~~~ll~~l~~lG~~~~~l~~fv~~~~~~~~~~~~g~~~~A~~~al~~~L~~y~~~l~~lE~~~ 79 (640)
++|++.+++ ..++++++++++++++|++|++|++|++..... ....|++.+||+++|+++|.+|++.|+.+|.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~g~~~~~l~~~i~~~~~~--~~~~~~~~~a~~~~l~~~L~~y~~~l~~le~~~ 98 (542)
T PF04130_consen 21 DRFELRPNISSHLSPPSLRSILNEILEIGTLYRRLRSFIERVSSS--SSERGPTLQAFASALSSILQEYREFLSELEESI 98 (542)
T ss_dssp TEEE--S----TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHTS------S-SHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CeEEECCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999987 378899999999999999999999999974211 113799999999999999999999999999998
Q ss_pred cCCCCccccccCCCCcccHHHHHHHhhchHHHHHHHHHHHHHh------cccCchhHHHHHHHHc---ccCCHHHHHHHH
Q 006554 80 MNPIPLVSESAGSGNYLSLRRLSVWFAEPMVKMRLMAVLVDKC------RVLRGGAMAGAIHLHA---QHGDLLVHEFMK 150 (640)
Q Consensus 80 ~~~~~~~~~~~~~~~~ltL~~l~~~l~~~~~~L~~l~~l~~~~------~~~~G~~lLs~l~~~~---~~Gd~~~~~~~~ 150 (640)
.. .+.+||..+..+++++..+++.|+.++..+ ...+|+.+|+.||... .+|+|..++++.
T Consensus 99 ~~-----------~~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~g~~lL~~L~~~~~~~~~g~~~~~~~l~ 167 (542)
T PF04130_consen 99 LS-----------NGSLSLLQLLAQLRPWFRRLEALADLIQEIIQLSLSQNLRGGQLLSILYERIYHQQSGDPELRKILQ 167 (542)
T ss_dssp HH------------TT--HHHHHHHTHHHHHHHHHHHHHHHHH----HHHT--THHHHHHHHHHH---HS--HHHHHHHH
T ss_pred hc-----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcHHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 63 256899999999999999999999999986 6789999999999987 789999999999
Q ss_pred HHHHHHhHHHHHHHHHHHhcCeecCCCCcceEeecc----CCCcccccCceeEecCCCCCcCCHHHHHHHHHhhHHHHHH
Q 006554 151 RLLRRVCSPLFEMVRSWVLEGELEDIFAEFFVVGHP----VKAESLWRDGYRLHSGMLPSFISQSLAQRILRTGKSINFL 226 (640)
Q Consensus 151 ~ll~~~~~p~~~~L~~Wl~~G~L~Dp~~EFFI~~~~----~~~~~~W~~~y~l~~~~vP~Fl~~~~a~kIl~~GKsl~~L 226 (640)
.|+.++++||++++..||.+|++.||++||||..++ ...+.+|.++|.++++++|.|++.++|++|+.+||++++|
T Consensus 168 ~ll~~~~~p~l~~l~~Wl~~G~l~D~~~EFfI~~~~~~~~~~~~~~w~~~f~l~~~~~P~fl~~~~a~~Il~~Gk~~~lL 247 (542)
T PF04130_consen 168 RLLNRCLQPYLRMLDSWLYRGELDDPYDEFFIQRNKESNSESSEDFWDDRFVLRESRVPSFLSKDLAEKILEIGKSLRLL 247 (542)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----TTS-SSEEE----------------EEE-GGGS-TTS-HHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHhCCccCCCccceeEeecccccCcccchhhccCEEECcccCChhcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999882 4567899999999999999999889999999999999999
Q ss_pred HHhhcCCCcchhHHHHHHhc-C-----CccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Q 006554 227 RVCCDDRGWADAATEAATAA-G-----TSTRRGSLGYGETDALETLVIEAAKRIDKHLLDVIYKRYKFREHCLAIKRYLL 300 (640)
Q Consensus 227 r~~~~~~~~~~~~~e~~~~~-~-----~~~~~~~l~~~~~~~l~~~I~~~~~~~s~~l~~~l~~~~~L~~hL~~lr~~~L 300 (640)
+.++....+........... . ...............++..|++.+..+++.++++++++++|.+|++++|+|||
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~l~~~~~l~~~l~~l~~~~L 327 (542)
T PF04130_consen 248 RSCNPEHEWCSDQELSSDLCLSDKESSESSSLQPFEPLDQDKLESKIESQYKLVNKSLLDLLFEDYNLLEHLKALRDFFL 327 (542)
T ss_dssp -----S------TT-SHHH----HHHHHHHHHHT-SS--HHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHTT
T ss_pred HHhccccccchhccchhhhhhhhhhhhhHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99988765432111000000 0 00000112223567899999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHhcccccCCCccccchhhHHHHHHHHHhhhcCCCCCc------------------hhhhchheeeccCC
Q 006554 301 LGQGDFVQYLMDIVGPELSEPANTISSFKLAGLLESAIRSSNAQYDDP------------------DILDRLRVKLMPHG 362 (640)
Q Consensus 301 l~~Gdf~~~f~~~l~~~L~~~~~~~~~~~L~~~L~~ai~~s~~~~d~~------------------~~~~~l~v~~~~~~ 362 (640)
||+|||+..|++.+++.+.++..+.....++..++.+++.+.....+. ......+.......
T Consensus 328 l~~gdf~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (542)
T PF04130_consen 328 LGDGDFADSFLESLFEKLESPSSRSSDSNLNSILQEALRASSADWSDESSNLRSGEISSSTSLSSNLSSNDSSSRNSNNS 407 (542)
T ss_dssp ---HHHHHHHHHHHHHHHSS---TTHHHHHHHHHHHHHHHTT---TTSGGGEEE--------------------------
T ss_pred hcCcHHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHhCccccccchhhhhhccccccccchhhhhhhhhhccccccc
Confidence 999999999999999999999888888899999998887654332111 00011111111223
Q ss_pred CCCccceEEEEEeecCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHHHHHHHHH
Q 006554 363 TGDRGWDVFSLEYDARVPLDTLFTESVMARYLKIFNFLWKLRRVEHALIGAWKAMKPNCITSNSFTKLQHAVKLQLLSTL 442 (640)
Q Consensus 363 ~~~~~~d~~~L~y~v~~PL~~i~t~~~m~~Y~~iF~fL~~lk~~~~~L~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~l 442 (640)
.+..+|+.+.|+|++||||++|||+++|.+|++||+|||++|++++.|+++|..++... +.... ........+
T Consensus 408 ~~~~~~~~l~L~y~~~~PL~lilt~~~~~~Y~~IF~~Ll~lk~~~~~L~~~w~~~~~~~---~~~~~----~~~~~~~~~ 480 (542)
T PF04130_consen 408 SSLEGWDALTLSYKVPWPLNLILTPSVMEKYNRIFRFLLQLKRAEWALQSVWRQLRRLS---RKFGK----PDRQSRPQL 480 (542)
T ss_dssp ----TTTTEEEEE---TTGGGTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGG---G------------S-SHH
T ss_pred ccccccceeEEEecCCccHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhccc----hhhhhhHHH
Confidence 46789999999999999999999999999999999999999999999999999754311 11000 011123467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHhcc
Q 006554 443 RRCQVLWDEMNHFVTNLQYYIMFEVLEVSWSNFSNEMEAAKDLDDLLAAHEKYLHSIFEKSL 504 (640)
Q Consensus 443 ~~~~~lr~~m~~fv~~l~~Y~~~~VIe~~w~~l~~~l~~~~dld~l~~~H~~fL~~i~~~~~ 504 (640)
++++.+|++|.||++++++|++++||++.|.+|.++|+++.|+|+|+++|++||++|.++||
T Consensus 481 ~~~~~lr~~m~~fv~~l~~y~~~~vI~~~~~~f~~~l~~~~~~d~l~~~H~~yL~~i~~~~f 542 (542)
T PF04130_consen 481 RRLQILRHRMQHFVNSLQSYLQFDVIEPSWSEFMEKLEKAKSLDELIEAHDDYLDRILRRCF 542 (542)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhhC
Confidence 88899999999999999999999999999999999999999999999999999999999997
No 5
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=232.97 Aligned_cols=505 Identities=18% Similarity=0.227 Sum_probs=337.6
Q ss_pred CChhHHHHHHHHhhhhHhHHHHHHHHhhhccCCCC-----------C---CCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006554 13 VPRATRVMVRKLCELGWLFRKVRGYISESMDRFPA-----------E---DVGTVGQAFCAALQDELLEYYKLLAVLEAQ 78 (640)
Q Consensus 13 ~~~~~~~ll~~l~~lG~~~~~l~~fv~~~~~~~~~-----------~---~~g~~~~A~~~al~~~L~~y~~~l~~lE~~ 78 (640)
-+|..+..+..+.-+|.-...|..|+.+..+.-|. . ..=.+-+||..++-+.--.|.+.++.++.=
T Consensus 331 ahpcdnfaleqiaalghnafgLlafidekmghepcllleglfmfpkkascafFefdkAfmralvkdfisfkeelaeIckc 410 (1121)
T KOG4344|consen 331 AHPCDNFALEQIAALGHNAFGLLAFIDEKMGHEPCLLLEGLFMFPKKASCAFFEFDKAFMRALVKDFISFKEELAEICKC 410 (1121)
T ss_pred ccchHHHHHHHHHHhhhhHHHHHhccchhccCCchHhhhhcccccCccccchhhHHHHHHHHHHHHHhhhHHHHHhHHhh
Confidence 45678899999999999999999999886543210 0 112467888888877777888889999987
Q ss_pred hcCCCCccccccCCCCcccHHHHHHHhhchHHH--HHHHHHHHH----H-----hcccCchhHHHHHHHH----cccCC-
Q 006554 79 AMNPIPLVSESAGSGNYLSLRRLSVWFAEPMVK--MRLMAVLVD----K-----CRVLRGGAMAGAIHLH----AQHGD- 142 (640)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ltL~~l~~~l~~~~~~--L~~l~~l~~----~-----~~~~~G~~lLs~l~~~----~~~Gd- 142 (640)
+.+. ...++|..++..+.+.+.. +..+..+.. + ........|++.|++. ...|+
T Consensus 411 iann----------dqnflLadVVdaLadmlelrhiidlHklffhGVaetppdeffavgardLlnpickaiiaYddrgea 480 (1121)
T KOG4344|consen 411 IANN----------DQNFLLADVVDALADMLELRHIIDLHKLFFHGVAETPPDEFFAVGARDLLNPICKAIIAYDDRGEA 480 (1121)
T ss_pred hhcC----------CceeeHHHHHHHHHHHHhhHHHHHHHHHhhcccccCCCchhhhhhHHHHHHHHHHHHHHhcccccc
Confidence 6543 3456787777777654432 222333211 1 1112335678888764 33443
Q ss_pred -HHH-HHHHHHHHHHHhHHHHHHHHHHHhcCeecCCCCcceEeecc---CCCccccc---------------CceeEe--
Q 006554 143 -LLV-HEFMKRLLRRVCSPLFEMVRSWVLEGELEDIFAEFFVVGHP---VKAESLWR---------------DGYRLH-- 200 (640)
Q Consensus 143 -~~~-~~~~~~ll~~~~~p~~~~L~~Wl~~G~L~Dp~~EFFI~~~~---~~~~~~W~---------------~~y~l~-- 200 (640)
|.. ..++-.|......|+++.++.|..+|.|.|.-.||.|.... ++...+|- ++|...
T Consensus 481 deakntlilFsiefeehfpqLqlldElaedghLddGaaefiiarlknrlvkHrdfqyaphqklataekfeneekmcdiad 560 (1121)
T KOG4344|consen 481 DEAKNTLILFSIEFEEHFPQLQLLDELAEDGHLDDGAAEFIIARLKNRLVKHRDFQYAPHQKLATAEKFENEEKMCDIAD 560 (1121)
T ss_pred CcccceEEEEEEehhhhhHHHHHHHHHHHhccccccHHHHHHHHHhccccccchhhhccHHHHHHHHHhhhHHHHhhhhc
Confidence 332 22344566778899999999999999999999999986653 33344441 122221
Q ss_pred ----cCCCC--------CcCCHHHHHHHHHhhHHHHHHHHh-hcCCCcc-------------------------------
Q 006554 201 ----SGMLP--------SFISQSLAQRILRTGKSINFLRVC-CDDRGWA------------------------------- 236 (640)
Q Consensus 201 ----~~~vP--------~Fl~~~~a~kIl~~GKsl~~Lr~~-~~~~~~~------------------------------- 236 (640)
....| +|..+ .-..|...||+...+... |.+.+..
T Consensus 561 assgraagedhlqefiVeFcke-edaniimagkrkqllgnlqcaEddKOGaeafdaeqscpLYqLfLEhalergehgddl 639 (1121)
T KOG4344|consen 561 ASSGRAAGEDHLQEFIVEFCKE-EDANIIMAGKRKQLLGNLQCAEDDLCLAEAFDAEQSCPLYQLFLEHALERGEHGDDL 639 (1121)
T ss_pred cccccccChHHHHHHHHHHHHH-HHHHHHHhhhHHHhhccccccchhhHHHHhhhhhhcCcHHHHHHHHHHHhccccccc
Confidence 11223 35644 445688899999988731 1111100
Q ss_pred ---hhHHHHHHhcCCc--------------------cccccccC----------------C-------------------
Q 006554 237 ---DAATEAATAAGTS--------------------TRRGSLGY----------------G------------------- 258 (640)
Q Consensus 237 ---~~~~e~~~~~~~~--------------------~~~~~l~~----------------~------------------- 258 (640)
+..+|..++..+. +......| +
T Consensus 640 cspntLsEmlqankEiqLmklhdeaeshffalddVhcgadaidfadepeedkDfedkfacgdvcvdrsqeirncelFaif 719 (1121)
T KOG4344|consen 640 CSPNTLSEMLQANKEIQLMKLHDEAESHFFALDDVHCGADAIDFADEPEEDKDFEDKFACGDVCVDRSQEIRNCELFAIF 719 (1121)
T ss_pred cCHHHHHHHHhhccccchhhHHHHHHHhHHHHhhccCcccccchhhCCCccccHHHhhccccccccccccceehhhHHHH
Confidence 0001110000000 00000000 0
Q ss_pred CchhHHHHHHHH--HHHHHHHHHHHHHhhccHHHHHHHHHHHHhcCCcchHHHHHHhcccccCCCccccchhhHHHHHHH
Q 006554 259 ETDALETLVIEA--AKRIDKHLLDVIYKRYKFREHCLAIKRYLLLGQGDFVQYLMDIVGPELSEPANTISSFKLAGLLES 336 (640)
Q Consensus 259 ~~~~l~~~I~~~--~~~~s~~l~~~l~~~~~L~~hL~~lr~~~Ll~~Gdf~~~f~~~l~~~L~~~~~~~~~~~L~~~L~~ 336 (640)
...-++..|+++ |-..+..|+..+.+++.+.+.|++.+.|+++..||.+..|.-..+......-.+.+...++..|++
T Consensus 720 lqpclephidkQrerLdccgnLManikKdlelsecLQakreffeaegedlmrdfwlaiedaIRakckeqnVaekmrfLqe 799 (1121)
T KOG4344|consen 720 LQPCLEPHIDKQRERLDCCGNLMANIKKDLELSECLQAKREFFEAEGEDLMRDFWLAIEDAIRAKCKEQNVAEKMRFLQE 799 (1121)
T ss_pred hhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 012466778888 566788999999999999999999999999999999888877766655433333344455666766
Q ss_pred HHhh---------hcCC---CCC------------------------chhhhchheeeccCC-----CCCccceEEEEEe
Q 006554 337 AIRS---------SNAQ---YDD------------------------PDILDRLRVKLMPHG-----TGDRGWDVFSLEY 375 (640)
Q Consensus 337 ai~~---------s~~~---~d~------------------------~~~~~~l~v~~~~~~-----~~~~~~d~~~L~y 375 (640)
|..- +|+- +++ |.+...|.|++.+.- ....++|++.|+|
T Consensus 800 amglekrYlfvedsnaLfirfEnvdnakkaLgsvltsklcavllphypqlahylhvklisqinsnsikvveaLdaieLdf 879 (1121)
T KOG4344|consen 800 AMGLEKRYLFVEDSNALFIRFENVDNAKKALGSVLTSKLCAVLLPHYPQLAHYLHVKLISQINSNSIKVVEALDAIELDF 879 (1121)
T ss_pred HhhhhhcccccccccceeEEeecccchhhhcchhhhhhhhhhhcccchhhhhHHHHHHHhhhcccchhhhhhhhheeecc
Confidence 6541 1110 000 112222333332211 1146789999999
Q ss_pred e--cCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccccccccc-ccc--chh------hHHHHHHHHHHH
Q 006554 376 D--ARVPLDTLFTESVMARYLKIFNFLWKLRRVEHALIGAWK-AMKPNCITSN-SFT--KLQ------HAVKLQLLSTLR 443 (640)
Q Consensus 376 ~--v~~PL~~i~t~~~m~~Y~~iF~fL~~lk~~~~~L~~~w~-~~~~~~~~~~-~~~--~~~------~~~~~~l~~~l~ 443 (640)
+ ++||..+|+++.+|+.||.+|..|+++|++.|.|+.+-. .+.......+ ++. ..+ ..-+..++..+|
T Consensus 880 erpmamhqdiiislacmkdYNqVflLlLkiKWAkwkLdnllfgelvsmaekpRakegliheqdtvaqfcapkdliglqIh 959 (1121)
T KOG4344|consen 880 ERPMAMHQDIIISLACMKDYNQVFLLLLKIKWAKWKLDNLLFGELVSMAEKPRAKEGLIHEQDTVAQFCAPKDLIGLQIH 959 (1121)
T ss_pred cCCcccchheEecHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhccccccccccccCCCccchHHHHHH
Confidence 9 899999999999999999999999999999999998533 2111000000 000 000 011234577899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHH
Q 006554 444 RCQVLWDEMNHFVTNLQYYIMFEVLEVSWSNFSNEMEAAKDLDDLLAAHEKYLHSIFEKSLLGERSQSLFKSLFVLFDLI 523 (640)
Q Consensus 444 ~~~~lr~~m~~fv~~l~~Y~~~~VIe~~w~~l~~~l~~~~dld~l~~~H~~fL~~i~~~~~L~~~~~~l~~~l~~il~~~ 523 (640)
++.++|.+++|||++|+.|+|..|+++.-.+|..++++|+|+|+++..|.+||..|..+|+|+++.+.+..+|.+||.++
T Consensus 960 RleilRfkLiffiNnLHahIMeailhStgleFehqieEaKdldeLiiiHdehLatihdhClLrdefkafkeAidkifhLa 1039 (1121)
T KOG4344|consen 960 RLEILRFKLIFFINNLHAHIMEAILHSTGLEFEHQIEEAKDLDELIIIHDEHLATIHDHCLLRDEFKAFKEAIDKIFHLA 1039 (1121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred HHHHH
Q 006554 524 LRFRS 528 (640)
Q Consensus 524 ~~F~~ 528 (640)
+-|..
T Consensus 1040 lmfad 1044 (1121)
T KOG4344|consen 1040 LMFAD 1044 (1121)
T ss_pred HHHhc
Confidence 99975
No 6
>PF10824 DUF2580: Protein of unknown function (DUF2580); InterPro: IPR022536 This entry represents the ESX-1 secretion-associated protein EspC protein family.
Probab=65.22 E-value=39 Score=27.88 Aligned_cols=73 Identities=22% Similarity=0.214 Sum_probs=54.1
Q ss_pred CCCceeecCCcCCChhHHHHHHHHhhhhHhHHHHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006554 1 MVDGYCLSDLVKVPRATRVMVRKLCELGWLFRKVRGYISESMDRFPAEDVGTVGQAFCAALQDELLEYYKLLAVLEAQA 79 (640)
Q Consensus 1 ~~~~f~i~~~~~~~~~~~~ll~~l~~lG~~~~~l~~fv~~~~~~~~~~~~g~~~~A~~~al~~~L~~y~~~l~~lE~~~ 79 (640)
|++.++|+|. .++.+-..+-.++.-......-+.... ......+|++..+|..++...+......+..+-..+
T Consensus 1 Ms~~l~Vdp~-----~Lr~~A~~~~~~A~~~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (100)
T PF10824_consen 1 MSDPLHVDPE-----ALRQAAAQLDDIADQLAAAASAVAGAS-AAVAAAFGPIGAAFAAALAEALEARQAALEQLAEAL 73 (100)
T ss_pred CCCCceECHH-----HHHHHHHHHHHHHHHHHHHHHhhcchh-ccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888887 888888888888888888777662111 113447899999999999888888777776665543
No 7
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton]
Probab=52.75 E-value=27 Score=41.10 Aligned_cols=122 Identities=8% Similarity=-0.120 Sum_probs=89.6
Q ss_pred CccceEEEEEeecCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHHHHHHHHHHH
Q 006554 365 DRGWDVFSLEYDARVPLDTLFTESVMARYLKIFNFLWKLRRVEHALIGAWKAMKPNCITSNSFTKLQHAVKLQLLSTLRR 444 (640)
Q Consensus 365 ~~~~d~~~L~y~v~~PL~~i~t~~~m~~Y~~iF~fL~~lk~~~~~L~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 444 (640)
..+||.....|+++.|++-.++.-+ . ..+|.++|++.+-.|.+.+.|..+.. .+ +....+. .+.
T Consensus 589 ~~~gd~gwdvfsl~y~v~~p~s~v~-t--~~~~~~ylrif~flwrlkR~e~~L~~-~i----~k~~m~~-----~~~--- 652 (879)
T KOG2000|consen 589 LSHGDDGWDVFSLDYAVDGPLSLVL-T--RELMLKYLRVFNFLWKLKRVEFLLEL-HI----WKMLMKD-----CNV--- 652 (879)
T ss_pred ccCCcccceeeeecceecccHHHHh-h--HHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HHhhhhh-----hcc---
Confidence 4688999999999999999998743 3 99999999999999999999986521 00 0000000 010
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHhccC
Q 006554 445 CQVLWDEMNHFVTNLQYYIMFEVLEVSWSNFSNEMEAAKDLDDLLAAHEKYLHSIFEKSLL 505 (640)
Q Consensus 445 ~~~lr~~m~~fv~~l~~Y~~~~VIe~~w~~l~~~l~~~~dld~l~~~H~~fL~~i~~~~~L 505 (640)
.-..+..|+|++.+...++...+.|-+|.. .+++--..++ ++..|-.++...+.....
T Consensus 653 ~~~~~~~~i~~~~~~~~r~h~~~~E~~~f~--sq~q~y~~f~-vie~~wk~l~~~~~~a~~ 710 (879)
T KOG2000|consen 653 AKRDRLLKIPEISCALHRCHILTNEMNHFI--SQMQYYILFE-VIECSWKELSKKMEPARN 710 (879)
T ss_pred cccchhcchHHHHhhhhhhhhHHHHHHHHH--Hhhhhccccc-hhhcChHHHHHHHhhccC
Confidence 234677899999999999988888777754 3443333444 999999999999888777
No 8
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=47.31 E-value=37 Score=30.31 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=37.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCchhhHhhhc
Q 006554 584 GEFLRNMEQELDATANEYTSLLEVFLAQLPVQQHVDLKFLLFRLD 628 (640)
Q Consensus 584 ~~~~~~~~~~~~~~~~~f~~~~~~fl~~l~~~~~~~l~~L~~rld 628 (640)
++.-......++++.+.|+..|.+.|..|..-+..|+..|.-|+|
T Consensus 75 ~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId 119 (132)
T PF05597_consen 75 DDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARID 119 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 334455677889999999999999999999887778888988886
No 9
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.98 E-value=14 Score=41.00 Aligned_cols=123 Identities=15% Similarity=0.129 Sum_probs=85.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCcccHHHHHHHhhchHHHHHHHHHHHHHhcccCchh-
Q 006554 51 GTVGQAFCAALQDELLEYYKLLAVLEAQAMNPIPLVSESAGSGNYLSLRRLSVWFAEPMVKMRLMAVLVDKCRVLRGGA- 129 (640)
Q Consensus 51 g~~~~A~~~al~~~L~~y~~~l~~lE~~~~~~~~~~~~~~~~~~~ltL~~l~~~l~~~~~~L~~l~~l~~~~~~~~G~~- 129 (640)
.+...-|+.+++..|+..++.|...|.....+ ...-|+..+..|+++....|+.+..++....-.+|.+
T Consensus 450 tppdeffavgardLlnpickaiiaYddrgead----------eakntlilFsiefeehfpqLqlldElaedghLddGaae 519 (1121)
T KOG4344|consen 450 TPPDEFFAVGARDLLNPICKAIIAYDDRGEAD----------EAKNTLILFSIEFEEHFPQLQLLDELAEDGHLDDGAAE 519 (1121)
T ss_pred CCCchhhhhhHHHHHHHHHHHHHHhccccccC----------cccceEEEEEEehhhhhHHHHHHHHHHHhccccccHHH
Confidence 45667889999999999999998888654321 1111333445677888888888888877654445543
Q ss_pred -----HHHHHHHHcccCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcCeecCCCCcceEe
Q 006554 130 -----MAGAIHLHAQHGDLLVHEFMKRLLRRVCSPLFEMVRSWVLEGELEDIFAEFFVV 183 (640)
Q Consensus 130 -----lLs~l~~~~~~Gd~~~~~~~~~ll~~~~~p~~~~L~~Wl~~G~L~Dp~~EFFI~ 183 (640)
+.+.++.+...-....+++.........+-|+...+.|.......|.-+||+|.
T Consensus 520 fiiarlknrlvkHrdfqyaphqklataekfeneekmcdiadassgraagedhlqefiVe 578 (1121)
T KOG4344|consen 520 FIIARLKNRLVKHRDFQYAPHQKLATAEKFENEEKMCDIADASSGRAAGEDHLQEFIVE 578 (1121)
T ss_pred HHHHHHhccccccchhhhccHHHHHHHHHhhhHHHHhhhhccccccccChHHHHHHHHH
Confidence 233333322212122366777777888899999999999999999999999884
No 10
>PF13060 DUF3921: Protein of unknown function (DUF3921)
Probab=33.06 E-value=86 Score=22.35 Aligned_cols=45 Identities=16% Similarity=0.400 Sum_probs=32.4
Q ss_pred HHHHHHhhhhHHHHHHHhhh-CCCHHHHHHHHHHHHHHHHHhccCC
Q 006554 462 YIMFEVLEVSWSNFSNEMEA-AKDLDDLLAAHEKYLHSIFEKSLLG 506 (640)
Q Consensus 462 Y~~~~VIe~~w~~l~~~l~~-~~dld~l~~~H~~fL~~i~~~~~L~ 506 (640)
-+....|+..+.++-+.++. -.-.|+|..+.++||..+....+++
T Consensus 7 smiqkaih~tydelgkei~~~g~~~d~i~kaqeeylsals~et~id 52 (58)
T PF13060_consen 7 SMIQKAIHRTYDELGKEIDLQGVIADEIQKAQEEYLSALSHETLID 52 (58)
T ss_pred HHHHHHHHHhHHHHhHHhhhcchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34455677778888777763 3457999999999998876655543
No 11
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=33.01 E-value=1.9e+02 Score=23.24 Aligned_cols=49 Identities=12% Similarity=0.341 Sum_probs=33.9
Q ss_pred HHHH-HhhhCCCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHH
Q 006554 474 NFSN-EMEAAKDLDDLLAAHEKYLHSIFEKSLLGERSQSLFKSLFVLFDLILRFR 527 (640)
Q Consensus 474 ~l~~-~l~~~~dld~l~~~H~~fL~~i~~~~~L~~~~~~l~~~l~~il~~~~~F~ 527 (640)
+|-+ .+++.-+.++|+..|.+++..+...+ ...+..++.=++++...|.
T Consensus 25 ~~~r~~i~~~I~PEeIv~iH~~~v~~l~~~~-----~~~v~~sld~LlEvm~~yg 74 (77)
T PF08673_consen 25 EFGRELIEKDISPEEIVEIHKSAVQELSPSL-----PEDVLDSLDFLLEVMIGYG 74 (77)
T ss_dssp HHHHHHHHTT--HHHHHHHHHHHHHHH-TTS------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcccc-----HHHHHHHHHHHHHHHHHcC
Confidence 4443 34567799999999999999998776 2567777777777766653
Done!