Query 006554
Match_columns 640
No_of_seqs 229 out of 840
Neff 8.6
Searched_HMMs 29240
Date Tue Mar 26 18:26:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006554.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2182-2186//hhsearch_pdb/006554hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rip_A Gamma-tubulin complex c 1.0 1 1 736.2 52.8 555 3-637 23-658 (677)
2 3tbi_A RNA polymerase-associat 1.0 1 1 12.8 -3.4 13 204-216 76-88 (115)
3 3njc_A YSLB protein; NESG, PSI 1.0 1 1 11.7 -1.0 24 200-223 36-59 (158)
4 3b4q_A Uncharacterized protein 1.0 1 1 10.8 -1.0 32 604-635 50-83 (94)
5 3gio_A Putative uncharacterize 1.0 1 1 10.0 -1.2 37 146-182 97-134 (186)
6 2wcr_A TNF-alpha inducer prote 1.0 1 1 9.8 -0.8 64 108-182 43-107 (159)
7 3eps_A Isocitrate dehydrogenas 1.0 1 1 9.6 1.6 14 385-398 349-362 (578)
8 3omb_A Extracellular solute-bi 1.0 1 1 9.5 5.2 51 448-499 482-533 (535)
9 4ae4_A Ubiquitin-associated pr 1.0 1 1 9.3 2.9 29 13-41 4-32 (118)
10 2j8x_A Uracil-DNA glycosylase; 1.0 1 1 9.1 2.6 23 4-26 78-100 (231)
No 1
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=736.24 Aligned_cols=555 Identities=22% Similarity=0.385 Sum_probs=454.7
Q ss_pred CCEEECCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CC-----CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 7403168868-991299999998566476999999872201589------98-----99772999999999999999999
Q 006554 3 DGYCLSDLVK-VPRATRVMVRKLCELGWLFRKVRGYISESMDRF------PA-----EDVGTVGQAFCAALQDELLEYYK 70 (640)
Q Consensus 3 ~~f~i~~~~~-i~~~~~~ll~~l~~lG~~y~~l~~fi~~~~~~~------~~-----~~~g~~~~al~~~l~~~L~~y~~ 70 (640)
++|+|+|+++ ++|++++++++++++|++|++|++|++...... +. ...|+|.+|||++|+++|.+|++
T Consensus 23 ~~f~v~~~~~~l~~s~r~ll~~l~~lg~~y~~l~~fv~~~~~~~~~~~~~~~~~~~~~~~g~v~~Al~~~i~~~L~~Y~~ 102 (677)
T 3rip_A 23 SGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQQQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPYRQ 102 (677)
T ss_dssp TEEECCSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC-------------CCSCSHHHHHHHHHHHHHTHHHHH
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 76230888898897799999999999999999999999603444575435443346677879999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 99999998429998643346888734088899973115999999999998712--4674249999998801698999999
Q 006554 71 LLAVLEAQAMNPIPLVSESAGSGNYLSLRRLSVWFAEPMVKMRLMAVLVDKCR--VLRGGAMAGAIHLHAQHGDLLVHEF 148 (640)
Q Consensus 71 ~i~~lE~~~~~~~~~~~~~~~~~~~lsL~~l~~~l~~~~~~L~~l~~lv~~~~--~~~g~~lLs~l~~~~~~gd~~~~~~ 148 (640)
.|+++|+++.. .+.+||.++..+++++..+|+.|+.++..+. ..+||++|+.||++..+|||.++++
T Consensus 103 ~i~~lE~~~l~-----------~~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~~~~~G~~lL~~L~~~~~~Gd~~~~~~ 171 (677)
T 3rip_A 103 ALLDLEQEFLG-----------DPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQKIHGCQILETVYKHSCGGLPPVRSA 171 (677)
T ss_dssp HHHHHHHHHHH-----------CTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHTCCTHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHHHHHHC-----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 99999999964-----------9998599999998889999999999999986189878999999999875499899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEECCC-C------------------------------------CCC
Q ss_conf 999999985999999999985281068999635861368-9------------------------------------733
Q 006554 149 MKRLLRRVCSPLFEMVRSWVLEGELEDIFAEFFVVGHPV-K------------------------------------AES 191 (640)
Q Consensus 149 ~~~Ll~~~~~p~~~~L~~Wl~~G~L~Dp~~EFFI~~~~~-~------------------------------------~~~ 191 (640)
+.+|+..|++||++||..||.+|+|.|||+||||.+++. . ...
T Consensus 172 ~~~Ll~~~~~~~~~~L~~Wl~~G~L~Dp~~EFFI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 251 (677)
T 3rip_A 172 LEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLA 251 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCCTTSCSSEEEC-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCC
T ss_conf 99999999999999999999687417876200367354434444453211111233456664321033320000002332
Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 3458646706998876797889999986679999997606787-----10167899774187655566668994169999
Q 006554 192 LWRDGYRLHSGMLPSFISQSLAQRILRTGKSINFLRVCCDDRG-----WADAATEAATAAGTSTRRGSLGYGETDALETL 266 (640)
Q Consensus 192 ~W~~~y~l~~~~iP~Fl~~~~a~kIl~~GKsl~~Lr~~~~~~~-----~~~~~~e~~~~~~~~~~~~~l~~~~~~~l~~~ 266 (640)
+|..+|.++.+++|+|+++++|+|||.|||++||||+++.... +.....+...... ........+...++.+
T Consensus 252 ~w~~~y~l~~~~lP~Fl~~~~A~kIl~~GKsln~lr~~~~~~~~~~~~~~~~~~~~~~~l~---~L~~~~~~~~~~~e~~ 328 (677)
T 3rip_A 252 PSLKQFSLRVEILPSYIPVRVAEKILFVGESVQMFENQNVNLTRKGSILKNQEDTFAAELH---RLKQQPLFSLVDFEQV 328 (677)
T ss_dssp -CCCCEEECGGGSCTTSCHHHHHHHHHHHHHHHTCCC-CCSCC---CTTCSHHHHHHHHHH---HHHTCSSCCHHHHHHH
T ss_pred CHHCCEEECHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH---HHHCCCCCCHHHHHHH
T ss_conf 2104634557657674688999999985178998870688887533445536899999999---8731456777879999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999999998011389999999897733785618889981221358985554153689999999822027889
Q 006554 267 VIEAAKRIDKHLLDVIYKRYKFREHCLAIKRYLLLGQGDFVQYLMDIVGPELSEPANTISSFKLAGLLESAIRSSNAQYD 346 (640)
Q Consensus 267 I~~~~~~~s~~l~~~l~~~~~L~~hL~~l~~~~LL~~gdf~~~l~~~l~~~L~~~~~~~~~~~L~~~L~~ai~~s~~~~d 346 (640)
|+++|..+|+.|+++++++++|.+||+++|+||||++|||+..|++.++++|.+|+.++.++.|+..|+.|++.+. .+
T Consensus 329 I~~~~~~as~~Ll~lL~~~~~L~~hL~~Lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~~~~~~~L~~~L~~a~~~~~--~~ 406 (677)
T 3rip_A 329 VDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQSAHKVL--LD 406 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHTT--CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC--CC
T ss_conf 9999999999999998506579999999999780477729999999999986289752579999999999999746--79
Q ss_pred CCHHHHCHHEEECCC---------------------CCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 902220011031369---------------------99986403899875428884311497789999999999998997
Q 006554 347 DPDILDRLRVKLMPH---------------------GTGDRGWDVFSLEYDARVPLDTLFTESVMARYLKIFNFLWKLRR 405 (640)
Q Consensus 347 ~~~~~~~l~v~~~~~---------------------~~~~~~~d~l~L~y~v~~PL~~iit~~~l~~Y~~iF~fL~~lk~ 405 (640)
++++.++|++++... ..+.+|||+|+|+|+|||||++|||+.+|.+|++||+|||++||
T Consensus 407 ~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~L~Y~v~~PL~liit~~~l~~Y~~iF~~Ll~lkr 486 (677)
T 3rip_A 407 DDNLLPLLHLTIEYHGKEHKDATQAREGPSRETSPREAPASGWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRR 486 (677)
T ss_dssp CTTTGGGEEEEECCCC-----------------------CCTTTTEEEEECCCTTGGGTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEEECCCHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 65567412377643664444556665443322344567755011278987679708873799999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 99999999860024453445321004679998899887999999999999999999998987345099999976307999
Q 006554 406 VEHALIGAWKAMKPNCITSNSFTKLQHAVKLQLLSTLRRCQVLWDEMNHFVTNLQYYIMFEVLEVSWSNFSNEMEAAKDL 485 (640)
Q Consensus 406 ~~~~L~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~m~~fi~~l~~Y~~~~VIe~~w~~l~~~l~~~~~l 485 (640)
+++.|+++|+..... +.... + ...+++ +.+|++|+|||+++++|++++||+++|.+|.+++++++|+
T Consensus 487 ~~~~L~~~w~~~~~~----~~~~~--~------~~~~~~-~~lr~~m~~Fv~~l~~Y~~~~Vie~~w~~~~~~l~~~~~~ 553 (677)
T 3rip_A 487 VQAELQHCWALQMQR----KHLKS--N------QTDAIK-WRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDF 553 (677)
T ss_dssp HHHHHHHHHHHHTSG----GGCCS--S------HHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHC----CCCCC--C------CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 999999999999852----35688--7------356999-9999999999999999998987999999999734558999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999999971059986089999999999999999999999998899999977420012100002333345668
Q 006554 486 DDLLAAHEKYLHSIFEKSLLGERSQSLFKSLFVLFDLILRFRSHADRLYEGIRELQARTMESSLSSRDKKKSSRQTNDMH 565 (640)
Q Consensus 486 d~l~~~H~~fL~~i~~~~lL~~~~~~l~~~l~~il~~~~~F~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (640)
|+++.+|+.||++|+..|||+. +++.+.+.+||++|++||.++.+.
T Consensus 554 d~l~~~H~~~L~~i~~~c~L~~--~~v~~~l~~il~~~~~F~~~~~~~-------------------------------- 599 (677)
T 3rip_A 554 ESIRLAHDHFLSNLLAQSFILL--KPVFHCLNEILDLCHSFCSLVSQN-------------------------------- 599 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHH--------------------------------
T ss_conf 9999999999999999875186--699999999999999999999863--------------------------------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC-CCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 89997676102567665467679999999999999999999999855---96-99987013576605543354478
Q 006554 566 TKPGSWLSDGRKALTQRAGEFLRNMEQELDATANEYTSLLEVFLAQL---PV-QQHVDLKFLLFRLDFTEFYTRLR 637 (640)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~fl~~l---~~-~~~~~l~~L~~rldfn~fY~~~~ 637 (640)
.+ ..... ..+.++.+.++|...+..|+..| .. ...+.+..|+.|||||+||+...
T Consensus 600 --~~---~~~~~------------~~~~~~~l~~~F~~~~~~L~~~l~~l~~~~~~~~l~~Ll~rLd~N~~y~~~~ 658 (677)
T 3rip_A 600 --LG---PLDER------------GAAQLSILVKGFSRQSSLLFKILSSVRNHQINSDLAQLLLRLDYNKYYTQAG 658 (677)
T ss_dssp --C-----CCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHC----
T ss_pred --CC---CCCCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHCCCC
T ss_conf --03---33523------------5899999999999999999999998835688538999999938523113799
No 2
>3tbi_A RNA polymerase-associated protein GP33; transcription accessory protein, transcription; 3.00A {Enterobacteria phage T4}
Probab=1.00 E-value=1 Score=12.75 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=4.3
Q ss_pred CCCCCCHHHHHHH
Q ss_conf 8876797889999
Q 006554 204 LPSFISQSLAQRI 216 (640)
Q Consensus 204 iP~Fl~~~~a~kI 216 (640)
+|.+|++.+.+||
T Consensus 76 ~~K~Ip~~IiEKI 88 (115)
T 3tbi_A 76 FAKFIPSGIIEKI 88 (115)
T ss_dssp HHHHSCHHHHHHH
T ss_pred HHHHCCHHHHHHH
T ss_conf 5674579999999
No 3
>3njc_A YSLB protein; NESG, PSI, structural genomics, protein structure initiative northeast structural genomics consortium, unknown function; 1.69A {Bacillus subtilis subsp}
Probab=1.00 E-value=1 Score=11.66 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=10.3
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 069988767978899999866799
Q 006554 200 HSGMLPSFISQSLAQRILRTGKSI 223 (640)
Q Consensus 200 ~~~~iP~Fl~~~~a~kIl~~GKsl 223 (640)
|+..+|..+..+....+.-+||.+
T Consensus 36 Rd~lLp~iLG~d~~~ILYWAGK~L 59 (158)
T 3njc_A 36 REIVLPDMLGQDYSSMMYWAGKHL 59 (158)
T ss_dssp HTTHHHHHHGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCEEEECCHHH
T ss_conf 970688983898765313322779
No 4
>3b4q_A Uncharacterized protein; APC90667.1, conserved protein domain, structural genomics, PSI-2, protein structure initiative; 1.55A {Corynebacterium diphtheriae NCTC13129}
Probab=1.00 E-value=1 Score=10.79 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=17.6
Q ss_pred HHHHHHHHCCCCCCCC--CHHHHHHHCCCCCCCC
Q ss_conf 9999998559699987--0135766055433544
Q 006554 604 LLEVFLAQLPVQQHVD--LKFLLFRLDFTEFYTR 635 (640)
Q Consensus 604 ~~~~fl~~l~~~~~~~--l~~L~~rldfn~fY~~ 635 (640)
.+...+..-..+-+.+ =.+=+.|=|||.||..
T Consensus 50 ~v~~~l~~~Gi~Vp~ev~~~Y~ANr~d~n~fY~a 83 (94)
T 3b4q_A 50 AIKVRLAGTGLGIPPQIEAFYQANRTNFNGFYMA 83 (94)
T ss_dssp HHHHHHHC---CCCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999849988889999999808769999998
No 5
>3gio_A Putative uncharacterized protein; antiparallel beta sheet, four-helix bundle, loop, DNA binding protein; 2.40A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=9.98 Aligned_cols=37 Identities=11% Similarity=0.224 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCC-CCEE
Q ss_conf 999999999985999999999985281068999-6358
Q 006554 146 HEFMKRLLRRVCSPLFEMVRSWVLEGELEDIFA-EFFV 182 (640)
Q Consensus 146 ~~~~~~Ll~~~~~p~~~~L~~Wl~~G~L~Dp~~-EFFI 182 (640)
+.+-..+|..+.+|...-|.+|..-|+--.|.+ |-|-
T Consensus 97 k~~d~eiF~qiTQaIaaSl~~~~qLGeYINPNN~EVFm 134 (186)
T 3gio_A 97 QKITNEMFIQMTQPIYDSLMNVDRLGIYINPNNEEVFA 134 (186)
T ss_dssp SCCCHHHHHHHHHHHHHHEEEEEEEEEEEETTTTEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCEECCCCCEEEE
T ss_conf 65408999999999999987588761401899700478
No 6
>2wcr_A TNF-alpha inducer protein; HP0596, TIP-alpha, immune system; 1.70A {Helicobacter pylori} PDB: 2wcq_A 3guq_A
Probab=1.00 E-value=1 Score=9.79 Aligned_cols=64 Identities=13% Similarity=0.217 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCC-CCEE
Q ss_conf 59999999999987124674249999998801698999999999999985999999999985281068999-6358
Q 006554 108 PMVKMRLMAVLVDKCRVLRGGAMAGAIHLHAQHGDLLVHEFMKRLLRRVCSPLFEMVRSWVLEGELEDIFA-EFFV 182 (640)
Q Consensus 108 ~~~~L~~l~~lv~~~~~~~g~~lLs~l~~~~~~gd~~~~~~~~~Ll~~~~~p~~~~L~~Wl~~G~L~Dp~~-EFFI 182 (640)
...++|....|+++.. -+|. ...+..-+.+-..+|....+|....+..|..-|+--.|.+ |-|-
T Consensus 43 eRA~~RvA~~Ia~KiK---------~~Y~--~~qN~~qk~~~~E~F~eiTQ~i~~Sl~k~~qLG~YINPNN~EVF~ 107 (159)
T 2wcr_A 43 KRATIRVAQNIVHKLK---------EAYL--SKTNRIKQKITNEMFIQMTQPIYDSLMNVDRLGIYINPNNEEVFA 107 (159)
T ss_dssp HHHHHHHHHHHHHHHH---------HHHH--STTCCCCSCCCHHHHHHHHHHHHHHEEEEEEEEEEECTTTCCEEE
T ss_pred HHHHHHHHHHHHHHHH---------HHHH--CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCEECCCCHHEEE
T ss_conf 7789889999999988---------8885--013302065418999999899999986488861501899710278
No 7
>3eps_A Isocitrate dehydrogenase kinase/phosphatase; ATP-binding, glyoxylate bypass, nucleotide-binding, protein phosphatase; HET: AMP ATP; 2.80A {Escherichia coli O157} PDB: 3lcb_A* 3lc6_A*
Probab=1.00 E-value=1 Score=9.57 Aligned_cols=14 Identities=21% Similarity=0.105 Sum_probs=9.0
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 49778999999999
Q 006554 385 FTESVMARYLKIFN 398 (640)
Q Consensus 385 it~~~l~~Y~~iF~ 398 (640)
=-..+..+|+.+.+
T Consensus 349 tr~~Vk~KY~LVK~ 362 (578)
T 3eps_A 349 SAAHVRACYQLVKE 362 (578)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH
T ss_conf 79999999999876
No 8
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=1.00 E-value=1 Score=9.54 Aligned_cols=51 Identities=8% Similarity=0.215 Sum_probs=34.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999-99999898734509999997630799999999999999999
Q 006554 448 LWDEMNHFVTN-LQYYIMFEVLEVSWSNFSNEMEAAKDLDDLLAAHEKYLHSI 499 (640)
Q Consensus 448 lr~~m~~fi~~-l~~Y~~~~VIe~~w~~l~~~l~~~~~ld~l~~~H~~fL~~i 499 (640)
+...+..++++ ...+++...++..|.++.++|+++. +|++++.++...++-
T Consensus 482 ~~~~i~~~~~~~~~~~i~g~~~~~~wd~y~~~l~~~g-~~~~~~~~q~~yd~~ 533 (535)
T 3omb_A 482 NNAEIFNTTMQKTATWMSKGGIDEEWDAYCKQLDSIG-LQESTKIWQKWYDTY 533 (535)
T ss_dssp HHHHHTTTHHHHHHHHHHHCCHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_conf 8734999999999999848982777999999999879-199999999999974
No 9
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=1.00 E-value=1 Score=9.26 Aligned_cols=29 Identities=14% Similarity=0.310 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99129999999856647699999987220
Q 006554 13 VPRATRVMVRKLCELGWLFRKVRGYISES 41 (640)
Q Consensus 13 i~~~~~~ll~~l~~lG~~y~~l~~fi~~~ 41 (640)
++|+++.++..+.++|+-..+..+-+...
T Consensus 4 l~~~e~~~v~~l~~MGFp~~~~~kAl~~~ 32 (118)
T 4ae4_A 4 MSPSERQCVETVVNMGYSYECVLRAMKAA 32 (118)
T ss_dssp SCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 98899999999998399899999999998
No 10
>2j8x_A Uracil-DNA glycosylase; hydrolase-inhibitor complex, hydrolase/inhibitor complex, EB repair, lytic protein, epstein-BARR virus; 2.3A {Epstein-barr virus} SCOP: c.18.1.1
Probab=1.00 E-value=1 Score=9.09 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=0.0
Q ss_pred CEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 40316886899129999999856
Q 006554 4 GYCLSDLVKVPRATRVMVRKLCE 26 (640)
Q Consensus 4 ~f~i~~~~~i~~~~~~ll~~l~~ 26 (640)
+|-+.+.+++|||++.+..++..
T Consensus 78 aFSv~~~v~~PpSL~NI~kEL~~ 100 (231)
T 2j8x_A 78 AFSVAYGFPVPPSLRNIYAELHR 100 (231)
T ss_dssp SSCCCTTSCCCHHHHHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHHHH
T ss_conf 55458999835489999999997
Done!