Query 006554
Match_columns 640
No_of_seqs 229 out of 840
Neff 8.6
Searched_HMMs 13730
Date Tue Mar 26 18:30:27 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006554.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2182-2186//hhsearch_scop/006554hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2i10a2 a.121.1.1 (A:79-194) P 7.4 42 0.0031 9.1 2.8 48 126-174 25-72 (116)
2 d1pb6a2 a.121.1.1 (A:86-211) H 7.3 44 0.0032 9.1 4.4 42 486-529 49-90 (126)
3 d2hyja2 a.121.1.1 (A:83-200) P 6.5 51 0.0037 8.6 8.3 77 127-234 26-102 (118)
4 d1hynp_ d.112.1.2 (P:) Erythro 3.1 1.3E+02 0.0091 6.2 3.8 28 473-500 237-264 (293)
5 d2g7sa2 a.121.1.1 (A:77-192) P 3.0 1.3E+02 0.0097 6.0 9.0 77 126-233 24-100 (116)
6 d1m98a1 a.175.1.1 (A:2-175) Or 2.8 1.4E+02 0.01 5.8 5.4 30 146-175 94-123 (174)
7 d3buxb1 a.39.1.7 (B:178-263) C 2.8 1.5E+02 0.011 5.8 1.7 51 119-169 32-83 (86)
8 d1rkta2 a.121.1.1 (A:83-205) H 2.6 1.6E+02 0.012 5.6 8.8 36 139-174 35-70 (123)
9 d1pzma_ c.61.1.1 (A:) Hypoxant 2.0 2.1E+02 0.015 4.8 0.7 19 213-231 105-123 (183)
10 d1vhna_ c.1.4.1 (A:) Putative 2.0 2.2E+02 0.016 4.7 4.5 30 470-499 275-304 (305)
No 1
>d2i10a2 a.121.1.1 (A:79-194) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=7.44 E-value=42 Score=9.14 Aligned_cols=48 Identities=8% Similarity=0.082 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEC
Q ss_conf 7424999999880169899999999999998599999999998528106
Q 006554 126 RGGAMAGAIHLHAQHGDLLVHEFMKRLLRRVCSPLFEMVRSWVLEGELE 174 (640)
Q Consensus 126 ~g~~lLs~l~~~~~~gd~~~~~~~~~Ll~~~~~p~~~~L~~Wl~~G~L~ 174 (640)
+||-+.+...+. ...|+.++..+...+......+...+.+-...|+|.
T Consensus 25 ~GCl~~~~~~E~-~~~d~~i~~~l~~~~~~~~~~l~~~l~~a~~~Gel~ 72 (116)
T d2i10a2 25 FGCMTVQAGLAS-GEPHHEIVDLLTAAREQMRQTVLDRFEKALADGDLP 72 (116)
T ss_dssp -CCCCSSCBTTT-BCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSC
T ss_pred CCCHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 977999857530-566099999999999999999999999998768998
No 2
>d1pb6a2 a.121.1.1 (A:86-211) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=7.28 E-value=44 Score=9.06 Aligned_cols=42 Identities=7% Similarity=0.179 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999971059986089999999999999999999
Q 006554 486 DDLLAAHEKYLHSIFEKSLLGERSQSLFKSLFVLFDLILRFRSH 529 (640)
Q Consensus 486 d~l~~~H~~fL~~i~~~~lL~~~~~~l~~~l~~il~~~~~F~~~ 529 (640)
......-.+.++.-.....+.+ -+.......|...|.-+...
T Consensus 49 ~~~~~~~~~il~~g~~~G~~r~--vdp~~l~~~I~~~~~~y~~~ 90 (126)
T d1pb6a2 49 KALIDEKSALIAGWVKSGKLAP--IDPQHLIFMIWASTQHYADF 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCS--CCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCCC--CCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999997798654--77999999999999999818
No 3
>d2hyja2 a.121.1.1 (A:83-200) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=6.46 E-value=51 Score=8.64 Aligned_cols=77 Identities=19% Similarity=0.154 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEECCCCCCCCCCCCEEEECCCCCC
Q ss_conf 42499999988016989999999999999859999999999852810689996358613689733345864670699887
Q 006554 127 GGAMAGAIHLHAQHGDLLVHEFMKRLLRRVCSPLFEMVRSWVLEGELEDIFAEFFVVGHPVKAESLWRDGYRLHSGMLPS 206 (640)
Q Consensus 127 g~~lLs~l~~~~~~gd~~~~~~~~~Ll~~~~~p~~~~L~~Wl~~G~L~Dp~~EFFI~~~~~~~~~~W~~~y~l~~~~iP~ 206 (640)
||-+.+..- .....++.+++.+...+.....-+.+.|......|++.. +.-|
T Consensus 26 GC~~~~~~~-E~~~~~~~ir~~l~~~~~~~~~~l~~~l~~a~~~G~i~~--------------------------~~d~- 77 (118)
T d2hyja2 26 GCLLTAALS-EYDGRPGRVRDAVAEVWSRWREQLRADLTAAVDKGELPA--------------------------GFDV- 77 (118)
T ss_dssp SCHHHHHHH-HHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCT--------------------------TCCH-
T ss_pred CCHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--------------------------CCCH-
T ss_conf 985676897-717799899999999999999999999999998698788--------------------------8999-
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 6797889999986679999997606787
Q 006554 207 FISQSLAQRILRTGKSINFLRVCCDDRG 234 (640)
Q Consensus 207 Fl~~~~a~kIl~~GKsl~~Lr~~~~~~~ 234 (640)
..+|..+..+.....+.....++..
T Consensus 78 ---~~lA~~l~~~~~G~~~~~r~~~d~~ 102 (118)
T d2hyja2 78 ---EQALFEIVAAGLALNAAMQLQHDRT 102 (118)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf ---9999999999999999999809858
No 4
>d1hynp_ d.112.1.2 (P:) Erythrocite membrane Band 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.13 E-value=1.3e+02 Score=6.21 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=24.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999976307999999999999999999
Q 006554 473 SNFSNEMEAAKDLDDLLAAHEKYLHSIF 500 (640)
Q Consensus 473 ~~l~~~l~~~~~ld~l~~~H~~fL~~i~ 500 (640)
..|.+.+-+|++-++++.+-++||+...
T Consensus 237 ~~F~~~~~~A~s~~dll~~IdEFLd~~~ 264 (293)
T d1hynp_ 237 RVFRIDAYMAQSRGELLHSLEGFLDCSL 264 (293)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCE
T ss_conf 9999999978999999999999736766
No 5
>d2g7sa2 a.121.1.1 (A:77-192) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=2.97 E-value=1.3e+02 Score=6.03 Aligned_cols=77 Identities=12% Similarity=-0.089 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEECCCCCCCCCCCCEEEECCCCC
Q ss_conf 74249999998801698999999999999985999999999985281068999635861368973334586467069988
Q 006554 126 RGGAMAGAIHLHAQHGDLLVHEFMKRLLRRVCSPLFEMVRSWVLEGELEDIFAEFFVVGHPVKAESLWRDGYRLHSGMLP 205 (640)
Q Consensus 126 ~g~~lLs~l~~~~~~gd~~~~~~~~~Ll~~~~~p~~~~L~~Wl~~G~L~Dp~~EFFI~~~~~~~~~~W~~~y~l~~~~iP 205 (640)
+||.+.+...+ ...-++.+++.+...+.....-+-+.+..-...|++..+. =
T Consensus 24 ~gCl~~~~a~E-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~a~~~g~~~~~~--------------------------d- 75 (116)
T d2g7sa2 24 PFCVCALLASE-IPVLPETVVLEVRAHFRSLSDWLTAVLERGIAQGRLVLTG--------------------------T- 75 (116)
T ss_dssp CSCHHHHHHTT-GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCSS--------------------------C-
T ss_pred CCCHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--------------------------C-
T ss_conf 99879899876-6108889999999999999999999999998868978763--------------------------5-
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 7679788999998667999999760678
Q 006554 206 SFISQSLAQRILRTGKSINFLRVCCDDR 233 (640)
Q Consensus 206 ~Fl~~~~a~kIl~~GKsl~~Lr~~~~~~ 233 (640)
+..+|.-|+.+-....++-+..++.
T Consensus 76 ---~~~lA~~l~~~~~G~~~~ar~~~d~ 100 (116)
T d2g7sa2 76 ---ARANAEIFMATVHGAMLSARAHGDA 100 (116)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHSSCCT
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf ---7898999999999999999872989
No 6
>d1m98a1 a.175.1.1 (A:2-175) Orange carotenoid protein, N-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]}
Probab=2.79 E-value=1.4e+02 Score=5.83 Aligned_cols=30 Identities=3% Similarity=-0.013 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCEECC
Q ss_conf 999999999985999999999985281068
Q 006554 146 HEFMKRLLRRVCSPLFEMVRSWVLEGELED 175 (640)
Q Consensus 146 ~~~~~~Ll~~~~~p~~~~L~~Wl~~G~L~D 175 (640)
......+-...---++-.|..||..|.+..
T Consensus 94 sR~Y~~ls~n~KL~fWY~Lae~M~~G~Vip 123 (174)
T d1m98a1 94 CRTYASWSPNIKLGFWYELGRFMDQGLVAP 123 (174)
T ss_dssp HHHHHTBCHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 899860588506799999998860782762
No 7
>d3buxb1 a.39.1.7 (B:178-263) Cbl {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.77 E-value=1.5e+02 Score=5.81 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=30.1
Q ss_pred HHHHCCCCCHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9871246742499999988-01698999999999999985999999999985
Q 006554 119 VDKCRVLRGGAMAGAIHLH-AQHGDLLVHEFMKRLLRRVCSPLFEMVRSWVL 169 (640)
Q Consensus 119 v~~~~~~~g~~lLs~l~~~-~~~gd~~~~~~~~~Ll~~~~~p~~~~L~~Wl~ 169 (640)
..++.....|.-.-.|.+. -.+++..+..+=-.++.+..+||-..|.+|=.
T Consensus 32 L~~vH~i~sg~ea~ALKsTIDLTcnd~IS~FEFDvFTRLFqPW~tll~NW~~ 83 (86)
T d3buxb1 32 LHEVHPISSGLEAMALKSTIDLTCNDYISVFEFDIFTRLFQPWSSLLRNWNS 83 (86)
T ss_dssp HHHHSCCCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHTCCGGGHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9985788985899998865131016713331000256622748999976777
No 8
>d1rkta2 a.121.1.1 (A:83-205) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=2.57 E-value=1.6e+02 Score=5.57 Aligned_cols=36 Identities=6% Similarity=0.168 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEC
Q ss_conf 169899999999999998599999999998528106
Q 006554 139 QHGDLLVHEFMKRLLRRVCSPLFEMVRSWVLEGELE 174 (640)
Q Consensus 139 ~~gd~~~~~~~~~Ll~~~~~p~~~~L~~Wl~~G~L~ 174 (640)
..-||.++..+...+......+-.+|...+..|++.
T Consensus 35 a~Rdpeir~~~~~~~~~~~~~l~~~i~~g~~~Ge~~ 70 (123)
T d1rkta2 35 AWRNEERRQYLEKRYDLFVERFSRLLQKGIDQGEFQ 70 (123)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 732999999999999999999999999999859868
No 9
>d1pzma_ c.61.1.1 (A:) Hypoxanthine-guanine-xanthine PRTase {Leishmania tarentolae [TaxId: 5689]}
Probab=2.02 E-value=2.1e+02 Score=4.79 Aligned_cols=19 Identities=11% Similarity=0.205 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHC
Q ss_conf 9999986679999997606
Q 006554 213 AQRILRTGKSINFLRVCCD 231 (640)
Q Consensus 213 a~kIl~~GKsl~~Lr~~~~ 231 (640)
.+.|+.+|+++..+.....
T Consensus 105 VDDI~DTG~Tl~~~~~~l~ 123 (183)
T d1pzma_ 105 VEDIVDSAITLQYLMRFML 123 (183)
T ss_dssp EEEEESSCHHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHH
T ss_conf 7206500389999999998
No 10
>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]}
Probab=1.99 E-value=2.2e+02 Score=4.74 Aligned_cols=30 Identities=7% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 509999997630799999999999999999
Q 006554 470 VSWSNFSNEMEAAKDLDDLLAAHEKYLHSI 499 (640)
Q Consensus 470 ~~w~~l~~~l~~~~~ld~l~~~H~~fL~~i 499 (640)
+.-++|..++.++++.+++.++.++|++.+
T Consensus 275 p~ak~~R~~l~~~~~~~el~~~l~~~~~e~ 304 (305)
T d1vhna_ 275 KGARRFREKVMKIEEVQILKEMFYNFIKEV 304 (305)
T ss_dssp TTHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 868999999984899999999999999963
Done!