BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006555
(640 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 192 bits (487), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 143/470 (30%), Positives = 235/470 (50%), Gaps = 52/470 (11%)
Query: 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGL 213
P V I+GRPNVGKS +FNR+ R ++V +TP VTRD A+ + F ++D+ G+
Sbjct: 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPG--VTRDRIYSSAEWLNYDFNLIDTGGI 81
Query: 214 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIV- 272
+ L + + + IFM++ R G+ D EV K L + KP+V
Sbjct: 82 DI--GDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTK---KPVVL 136
Query: 273 AMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVL 332
A+NK ++ + + LGFG+P IS GLG+ +L +A+ ++
Sbjct: 137 AVNKLDNTE-----MRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNI----- 186
Query: 333 NDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLT 392
PE ++ +Q ++GRPNVGKS+L+NA+L E+RV+V AG T
Sbjct: 187 ----------------PETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTT 230
Query: 393 RDSVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKNLMRAHVVALVLDAEE- 450
RD+V F Y + +VDTAG ++ K + SV+++ K + R+ VVA+VLD EE
Sbjct: 231 RDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEG 290
Query: 451 ---------VRAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501
A E G+ +V++VNK D + ++ + K +E + Q + P
Sbjct: 291 IIEQDKRIAGYAHEAGKAVVIVVNKWDAVD--KDESTMKEFEENIRDHFQF----LDYAP 344
Query: 502 VVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRH-SWKDQSAQPKIKY 560
++F SAL + +M +I + LR+ T+ LN + + + + ++ KI Y
Sbjct: 345 ILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYY 404
Query: 561 FTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRS 610
TQV +PP+FV F++ + + + RFL +++ F G PI+I R+
Sbjct: 405 ATQVSVKPPSFVVFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFARA 454
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 182 bits (462), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 141/470 (30%), Positives = 229/470 (48%), Gaps = 52/470 (11%)
Query: 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGL 213
P V I+GRPNVGKS +FNR+ R ++V +TP VTRD A+ + F ++D+ G+
Sbjct: 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPG--VTRDRIYSSAEWLNYDFNLIDTGGI 61
Query: 214 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIV- 272
+ L + + IF ++ R G+ D EV K L + KP+V
Sbjct: 62 DI--GDEPFLAQIRQQAEIAXDEADVIIFXVNGREGVTAADEEVAKILYRTK---KPVVL 116
Query: 273 AMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVL 332
A+NK ++ + LGFG+P IS GLG+ +L +A+ ++
Sbjct: 117 AVNKLDNTEXRANIY-----DFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNI----- 166
Query: 333 NDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLT 392
PE ++ +Q ++GRPNVGKS+L+NA L E+RV+V AG T
Sbjct: 167 ----------------PETKYNEEVIQFCLIGRPNVGKSSLVNAXLGEERVIVSNVAGTT 210
Query: 393 RDSVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKNLMRAHVVALVLDAEE- 450
RD+V F Y + +VDTAG ++ K + SV+++ K + R+ VVA+VLD EE
Sbjct: 211 RDAVDTSFTYNQQEFVIVDTAGXRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEG 270
Query: 451 ---------VRAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501
A E G+ +V++VNK D + ++ + K +E + Q + P
Sbjct: 271 IIEQDKRIAGYAHEAGKAVVIVVNKWDAVD--KDESTXKEFEENIRDHFQF----LDYAP 324
Query: 502 VVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRH-SWKDQSAQPKIKY 560
++F SAL + + +I + LR+ T+ LN + + + + ++ KI Y
Sbjct: 325 ILFXSALTKKRIHTLXPAIIKASENHSLRVQTNVLNDVIXDAVAXNPTPTHNGSRLKIYY 384
Query: 561 FTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRS 610
TQV +PP+FV F++ + + RFL +++ F G PI+I R+
Sbjct: 385 ATQVSVKPPSFVVFVNDPELXHFSYERFLENRIRDAFGFEGTPIKIFARA 434
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 138/464 (29%), Positives = 234/464 (50%), Gaps = 49/464 (10%)
Query: 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 214
TV+I+GRPNVGKS LFN+L+++++A+V + ++ VTRD + + FK++D+ G+
Sbjct: 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVED--EEGVTRDPVQDTVEWYGKTFKLVDTCGV- 59
Query: 215 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAM 274
+ I + +T N + + +F++D + G+ D + +LRK + I+
Sbjct: 60 FDNPQDIISQKXKEVTLNXIREADLVLFVVDGKRGITKEDESLADFLRKST--VDTILVA 117
Query: 275 NKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVLND 334
NK E+L + E LGFG+PI +SAE + + E + +E+ L +
Sbjct: 118 NKAENLREFEREVK---PELYSLGFGEPIPVSAEHNINLDTXLETIIKKLEEKGLDL--- 171
Query: 335 SCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRD 394
S ++T +++AIVGRPNVGKSTL NA+L ++R LV P G TRD
Sbjct: 172 ------ESKPEITDA--------IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRD 217
Query: 395 SVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRK---NLMRAHVVALVLDAEEV 451
V GR VDTAG L+R+ P ++ + + ++ +A VV +VLDA +
Sbjct: 218 PVDDEVFIDGRKYVFVDTAG-LRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQG 276
Query: 452 RAVEE----------GRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501
++ GR VV+ NK DL+ R+ KR E + + + + P
Sbjct: 277 ITRQDQRXAGLXERRGRASVVVFNKWDLVVHRE-----KRYDE-FTKLFREKLYFIDYSP 330
Query: 502 VVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQPKIKYF 561
++FTSA +G + Y + ++P+S +N L+KV+ ++ + KI +
Sbjct: 331 LIFTSADKGWNIDRXIDAXNLAYASYTTKVPSSAINSALQKVL---AFTNLPRGLKIFFG 387
Query: 562 TQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKED-FDLGGIPI 604
QV +PPTF+ F++ + + + + FL K +++ F G PI
Sbjct: 388 VQVDIKPPTFLFFVNSIEKVKNPQKIFLRKLIRDYVFPFEGSPI 431
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 94/169 (55%), Gaps = 20/169 (11%)
Query: 156 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 215
V+I+GRPNVGKS+LFNRL+++R A+V + P VTRD++EG+ + RF ++D+ GL
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVP--GVTRDLKEGVVETDRGRFLLVDTGGL-- 59
Query: 216 EATSGSILDRTAGMTAN-VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPI--V 272
SG ++ + L + +F +D R+ L D EV ++LR+ KP+ V
Sbjct: 60 --WSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKG---KPVILV 114
Query: 273 AMNKCESLHN-GTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 320
A + H G L G LGFGDPI S+E G+ EL EA+
Sbjct: 115 ATKVDDPKHELYLGPLYG-------LGFGDPIPTSSEHARGLEELLEAI 156
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAG---- 414
++ IVGRPNVGKS+L N LL++ +V G+TRD E LVDT G
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG 62
Query: 415 --WLQREKEK 422
W ++ +EK
Sbjct: 63 DKWEKKIQEK 72
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 94/184 (51%), Gaps = 16/184 (8%)
Query: 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 417
L++AIVGRPNVGKS+LLNA Q DR +V G TRD V G V ++DTAG
Sbjct: 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGI-- 282
Query: 418 REKEKGPASLSVMQSRKNLMRAHVVALVLDA--------EEVRAVEEGRGLVVIVNKMDL 469
RE + V +SR+ A +V L +DA +E+ + R L++++NK+DL
Sbjct: 283 RETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDL 342
Query: 470 LSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALE----GRGRIAVMHQVIDTYQ 525
+ + ++L E + Q + T Q GI + T+ LE G+ + A M I+ Q
Sbjct: 343 VEKQLITSL--EYPENITQIVHTAAAQKQGIDSLETAILEIVQTGKVQAADMDLAINQRQ 400
Query: 526 KWCL 529
L
Sbjct: 401 AAAL 404
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 16/127 (12%)
Query: 156 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 215
V I+GRPNVGKS+L N + A+V + P TRD+ E +G + +VLD+AG+
Sbjct: 227 VAIVGRPNVGKSSLLNAWSQSDRAIVTDLPG--TTRDVVESQLVVGGIPVQVLDTAGIRE 284
Query: 216 EATS----GSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPI 271
+ G R A TA+++ + ID +G D E+ + + KH P I
Sbjct: 285 TSDQVEKIGVERSRQAANTADLV------LLTIDAATGWTTGDQEIYEQV-KHRP---LI 334
Query: 272 VAMNKCE 278
+ MNK +
Sbjct: 335 LVMNKID 341
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 9/122 (7%)
Query: 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 417
L++ IVG+PNVGKSTLLN LL EDR +V G TRD + +G +VDTAG ++
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAG-VR 302
Query: 418 REKEKGPASLSVMQSRKNLMRAHVVALVLDA-----EEVRAVEE---GRGLVVIVNKMDL 469
E L + ++ + + +A +V VLDA EE R + E + +V++NK+D+
Sbjct: 303 SETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDV 362
Query: 470 LS 471
+
Sbjct: 363 VE 364
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 92/193 (47%), Gaps = 20/193 (10%)
Query: 156 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 215
++I+G+PNVGKS L NRL+ A+V + P TRD+ + + F+++D+AG+ +
Sbjct: 246 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIP--GTTRDVISEEIVIRGILFRIVDTAGVRS 303
Query: 216 EATSGSILDRTA-GMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAM 274
E + +++R T + K +F++D S PLD E K L + + + +V +
Sbjct: 304 E--TNDLVERLGIERTLQEIEKADIVLFVLDASS---PLDEEDRKILERIKNK-RYLVVI 357
Query: 275 NKCESLHNGTGSLAGAAAESLMLGFGDP---IAISAETGLGMTELYEALRPSVEDYMLRV 331
NK + + E + G + ISA G G+ +L E++ ++ R
Sbjct: 358 NKVDVVEK-------INEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRETQEIFERG 410
Query: 332 LNDSCTQNNSSTQ 344
+DS N Q
Sbjct: 411 -SDSLITNLRQKQ 422
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 417
+++ I GRPN GKS+LLNAL + +V AG TRD +R H G ++++DTAG
Sbjct: 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGL-- 62
Query: 418 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVE 455
RE + + ++ + + +A V ++D AV+
Sbjct: 63 REASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVD 100
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 156 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGL 213
V+I GRPN GKS+L N L R A+V + TRD+ + + ++D+AGL
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAG--TTRDVLREHIHIDGMPLHIIDTAGL 62
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 417
+++ I GRPN GKS+LLNAL + +V AG TRD +R H G ++++DTAG
Sbjct: 8 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGL-- 65
Query: 418 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVE 455
RE + + ++ + + +A V ++D AV+
Sbjct: 66 REASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVD 103
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 156 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGL 213
V+I GRPN GKS+L N L R A+V + TRD+ + + ++D+AGL
Sbjct: 10 VVIAGRPNAGKSSLLNALAGREAAIVTDIAG--TTRDVLREHIHIDGMPLHIIDTAGL 65
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 418
++ I GRPN GKS+LLNAL + +V AG TRD +R H G ++++DTAG R
Sbjct: 6 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGL--R 63
Query: 419 EKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVE 455
E + + ++ + + +A V +D AV+
Sbjct: 64 EASDEVERIGIERAWQEIEQADRVLFXVDGTTTDAVD 100
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 156 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGL 213
V+I GRPN GKS+L N L R A+V + TRD+ + ++D+AGL
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAG--TTRDVLREHIHIDGXPLHIIDTAGL 62
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 68/163 (41%), Gaps = 28/163 (17%)
Query: 362 IVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE 421
I G+PN GKSTLLN LL ++R +V G TRD + F + L DTAG RE
Sbjct: 238 IAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGL--REAG 295
Query: 422 KGPASLSVMQSRKNLMRAHVVALVLD------------AEEVRAVEEGRGLVVIVNKMDL 469
+ + +SR + A ++ +LD E++A + + NK+D
Sbjct: 296 EEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLD- 354
Query: 470 LSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 512
+ A + I TG V+ SAL G G
Sbjct: 355 -------------RAANADALIRAIADGTGTEVIGISALNGDG 384
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 16/170 (9%)
Query: 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 214
+ +I G+PN GKS L N L+ + A+V + P TRD E F++ D+AGL
Sbjct: 235 STVIAGKPNAGKSTLLNTLLGQERAIVSHMPG--TTRDYIEECFIHDKTMFRLTDTAGLR 292
Query: 215 TEATSGSILDRTAGMTANV-LAKTQFAIFMIDVRSGLHPLDLEVG--KWLRKHAPQIKPI 271
+G ++ + + +A+ ++++D+ G LD E+ + L+ P K +
Sbjct: 293 ---EAGEEIEHEGIRRSRMKMAEADLILYLLDL--GTERLDDELTEIRELKAAHPAAKFL 347
Query: 272 VAMNKCESLHNGTGSLAGAAAESLMLGFG-DPIAISAETGLGMTELYEAL 320
NK + N A A ++ G G + I ISA G G+ L + +
Sbjct: 348 TVANKLDRAAN-----ADALIRAIADGTGTEVIGISALNGDGIDTLKQHM 392
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 31/184 (16%)
Query: 360 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRV----HFEYQGRTVYLVDTAGW 415
+AIVG+PNVGKSTLLN LL ++ P+AG TR +RV + + + ++L DT G
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTR--MRVLGVKNIPNEAQIIFL-DTPGI 68
Query: 416 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEE-VRAVEE----------GRGLVVIV 464
+ +K V ++++L A V+ ++DA E R +E + ++V++
Sbjct: 69 YEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVI 128
Query: 465 NKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 524
NK+D + +N + EI P++T I V SAL+G A + +++ T
Sbjct: 129 NKIDKIGPAKNVL-------PLIDEIHKKHPELTEI--VPISALKG----ANLDELVKTI 175
Query: 525 QKWC 528
K+
Sbjct: 176 LKYL 179
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 156 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-GDLRFKVLDSAGLE 214
V I+G+PNVGKS L N L+ + +++ +P TR G+ + + + LD+ G+
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSII--SPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIY 69
Query: 215 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKP-IVA 273
S + + L + +FMID G P D E+ + K P KP IV
Sbjct: 70 EPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIK--PLNKPVIVV 127
Query: 274 MNKCESL 280
+NK + +
Sbjct: 128 INKIDKI 134
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 31/184 (16%)
Query: 360 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRV----HFEYQGRTVYLVDTAGW 415
+AIVG+PNVGKSTLLN LL ++ P+AG TR +RV + + + ++L DT G
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTR--MRVLGVKNIPNEAQIIFL-DTPGI 69
Query: 416 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEE-VRAVEE----------GRGLVVIV 464
+ +K V ++++L A V+ ++DA E R +E + ++V++
Sbjct: 70 YEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVI 129
Query: 465 NKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 524
NK+D + +N + EI P++T I V SAL+G A + +++ T
Sbjct: 130 NKIDKIGPAKNVL-------PLIDEIHKKHPELTEI--VPISALKG----ANLDELVKTI 176
Query: 525 QKWC 528
K+
Sbjct: 177 LKYL 180
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 156 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-GDLRFKVLDSAGLE 214
V I+G+PNVGKS L N L+ + +++ +P TR G+ + + + LD+ G+
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSII--SPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIY 70
Query: 215 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKP-IVA 273
S + + L + +FMID G P D E+ + K P KP IV
Sbjct: 71 EPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIK--PLNKPVIVV 128
Query: 274 MNKCESL 280
+NK + +
Sbjct: 129 INKIDKI 135
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAG---W 415
++A++G PNVGKST+ NAL E+ V +G G+T + FEY G +VD G
Sbjct: 5 EIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63
Query: 416 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAE---EVRAVEEGRGLVVIVNKMDL 469
++ A ++ + +L+ V A L+ ++ +E G L++ +NKMDL
Sbjct: 64 TANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDL 120
Score = 35.4 bits (80), Expect = 0.095, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 15/173 (8%)
Query: 156 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 215
+ +IG PNVGKS +FN L + N P VT + +EG + +FKV+D G+ +
Sbjct: 6 IALIGNPNVGKSTIFNALT-GENVYIGNWPG--VTVEKKEGEFEYNGEKFKVVDLPGVYS 62
Query: 216 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKP--IVA 273
T+ SI D + K + ++D + LE +L ++ ++A
Sbjct: 63 -LTANSI-DEIIARDYIINEKPDLVVNIVDATA------LERNLYLTLQLMEMGANLLLA 114
Query: 274 MNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVED 326
+NK + L G +LG + +SA +G+ EL +A+ +V+D
Sbjct: 115 LNKMD-LAKSLGIEIDVDKLEKILGV-KVVPLSAAKKMGIEELKKAISIAVKD 165
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAG---W 415
++A++G PNVGKST+ NAL E+ V +G G+T + FEY G +VD G
Sbjct: 5 EIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63
Query: 416 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAE---EVRAVEEGRGLVVIVNKMDL 469
++ A ++ + +L+ V A L+ ++ +E G L++ +NKMDL
Sbjct: 64 TANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDL 120
Score = 35.4 bits (80), Expect = 0.098, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 15/173 (8%)
Query: 156 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 215
+ +IG PNVGKS +FN L + N P VT + +EG + +FKV+D G+ +
Sbjct: 6 IALIGNPNVGKSTIFNALT-GENVYIGNWPG--VTVEKKEGEFEYNGEKFKVVDLPGVYS 62
Query: 216 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKP--IVA 273
T+ SI D + K + ++D + LE +L ++ ++A
Sbjct: 63 -LTANSI-DEIIARDYIINEKPDLVVNIVDATA------LERNLYLTLQLMEMGANLLLA 114
Query: 274 MNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVED 326
+NK + L G +LG + +SA +G+ EL +A+ +V+D
Sbjct: 115 LNKMD-LAKSLGIEIDVDKLEKILGV-KVVPLSAAKKMGIEELKKAISIAVKD 165
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAG---W 415
++A++G PNVGKST+ NAL E+ V +G G+T + FEY G +VD G
Sbjct: 9 EIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67
Query: 416 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAE---EVRAVEEGRGLVVIVNKMDL 469
++ A ++ + +L+ V A L+ ++ +E G L++ +NKMDL
Sbjct: 68 TANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDL 124
Score = 35.4 bits (80), Expect = 0.097, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 15/173 (8%)
Query: 156 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 215
+ +IG PNVGKS +FN L + N P VT + +EG + +FKV+D G+ +
Sbjct: 10 IALIGNPNVGKSTIFNALT-GENVYIGNWPG--VTVEKKEGEFEYNGEKFKVVDLPGVYS 66
Query: 216 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKP--IVA 273
T+ SI D + K + ++D + LE +L ++ ++A
Sbjct: 67 -LTANSI-DEIIARDYIINEKPDLVVNIVDATA------LERNLYLTLQLMEMGANLLLA 118
Query: 274 MNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVED 326
+NK + L G +LG + +SA +G+ EL +A+ +V+D
Sbjct: 119 LNKMD-LAKSLGIEIDVDKLEKILGV-KVVPLSAAKKMGIEELKKAISIAVKD 169
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 109/224 (48%), Gaps = 21/224 (9%)
Query: 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 417
+++A+ G PNVGK++L NAL + V G+T + F Y+G T+ L+D G
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64
Query: 418 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQNSA 477
G +S+ +R L++ ++L A+ V E+ L++ + +M+ +A
Sbjct: 65 L----GYSSIDEKIARDYLLKGDADLVILVADSVNP-EQSLYLLLEILEMEKKVILAMTA 119
Query: 478 LYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLN 537
+ + K + + + + + GIPVVFTS++ G G + ++++ QK N
Sbjct: 120 IDEAKKTGMKID-RYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQK----------N 168
Query: 538 RWLRKVMGRHSWKDQSAQPKIKYF---TQVKARPPTF-VAFLSG 577
L +++ + K +S K++ F +++ P F + +LSG
Sbjct: 169 TILHRMILDYGEKVESEIKKVENFLRDKKLRINPRYFALKYLSG 212
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 45/169 (26%), Positives = 86/169 (50%), Gaps = 7/169 (4%)
Query: 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 417
+++A+ G PNVGK++L NAL + V G+T + F Y+G T+ L+D G
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPG--- 61
Query: 418 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQNSA 477
G +S+ +R L++ ++L A+ V E+ L++ + +M+ +A
Sbjct: 62 -TYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP-EQSLYLLLEILEMEKKVILAMTA 119
Query: 478 LYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 526
+ + K + + + + + GIPVVFTS++ G G + ++++ QK
Sbjct: 120 IDEAKKTGMKID-RYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQK 167
Score = 28.9 bits (63), Expect = 8.1, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 156 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAG 212
V + G PNVGK++LFN L ++ V N P VT + +EG+ ++D G
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQ-YVANWPG--VTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Query: 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAG---W 415
++A++G PNVGKST+ NAL E+ V +G G+T + FEY G +VD G
Sbjct: 6 EIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 64
Query: 416 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAE---EVRAVEEGRGLVVIVNKMDL 469
++ A ++ + +L+ V A L+ ++ E G L++ +NK DL
Sbjct: 65 TANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLXEXGANLLLALNKXDL 121
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 156 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGL 213
+ +IG PNVGKS +FN L + N P VT + +EG + +FKV+D G+
Sbjct: 7 IALIGNPNVGKSTIFNALT-GENVYIGNWPG--VTVEKKEGEFEYNGEKFKVVDLPGV 61
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 102/226 (45%), Gaps = 25/226 (11%)
Query: 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 417
+++A+ G PNVGK++L NAL + V G+T + F Y+G T+ L+D G
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64
Query: 418 REKEKGPASLSVMQSRKNLMR--AHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQN 475
G +S+ +R L++ A +V LV D+ ++ K +L+
Sbjct: 65 L----GYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEXEKKVILAXTAI 120
Query: 476 SALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSR 535
K + E+Q + GIPVVFTS++ G G + ++++ QK
Sbjct: 121 DEAKKTGXKIDRYELQKHL----GIPVVFTSSVTGEGLEELKEKIVEYAQK--------- 167
Query: 536 LNRWLRKVMGRHSWKDQSAQPKIKYF---TQVKARPPTF-VAFLSG 577
N L + + + K +S K++ F +++ P F + +LSG
Sbjct: 168 -NTILHRXILDYGEKVESEIKKVENFLRDKKLRINPRYFALKYLSG 212
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 87/191 (45%), Gaps = 18/191 (9%)
Query: 148 IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKV 207
ID + + I+GRPNVGKS L N+L+ ++ ++ + TR G+ G +
Sbjct: 3 IDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISI--TSRKAQTTRHRIVGIHTEGAYQAIY 60
Query: 208 LDSAGLETEATSG--SILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHA 265
+D+ GL E ++++ A ++ + + IF+++ ++ + K A
Sbjct: 61 VDTPGLHMEEKRAINRLMNKAA---SSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKA 117
Query: 266 PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSV- 324
P I+A+NK +++ L + + F D + ISAETGL + + +R +
Sbjct: 118 P---VILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP 174
Query: 325 -------EDYM 328
EDY+
Sbjct: 175 EATHHFPEDYI 185
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 360 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDS-VRVHFEYQGRTVYLVDTAGWLQR 418
+AIVGRPNVGKSTLLN LL + + +A TR V +H E + +Y VDT G
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIY-VDTPGLHME 69
Query: 419 EK 420
EK
Sbjct: 70 EK 71
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 84/183 (45%), Gaps = 18/183 (9%)
Query: 156 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 215
+ I+GRPNVGKS L N+L+ ++ ++ + TR G+ G + +D+ GL
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISI--TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM 65
Query: 216 EATSG--SILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVA 273
E ++++ A ++ + + IF+++ ++ + K AP I+A
Sbjct: 66 EEKRAINRLMNKAA---SSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAP---VILA 119
Query: 274 MNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSV--------E 325
+NK +++ L + + F D + ISAETGL + + +R + E
Sbjct: 120 VNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPE 179
Query: 326 DYM 328
DY+
Sbjct: 180 DYI 182
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 360 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDS-VRVHFEYQGRTVYLVDTAGWLQR 418
+AIVGRPNVGKSTLLN LL + + +A TR V +H E + +Y VDT G
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIY-VDTPGLHME 66
Query: 419 EK 420
EK
Sbjct: 67 EK 68
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 65/137 (47%), Gaps = 14/137 (10%)
Query: 360 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG-RTVYLVDTAGWLQR 418
+ + GR NVGKS+ +NAL+ ++ +V AG T D V E V LVDT G L
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPG-LDD 95
Query: 419 EKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGL--------VVIVNKMDLL 470
E G L V ++R+ RA LV D+ ++ L VV+VNK+D+L
Sbjct: 96 VGELG--RLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVL 153
Query: 471 SGRQNS--ALYKRVKEA 485
+ LY+ EA
Sbjct: 154 GEKAEELKGLYESRYEA 170
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 25/192 (13%)
Query: 348 SPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTV 407
+P D L ++A VGR NVGKS+LLNAL V G TR ++F
Sbjct: 14 TPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRS---INFYLVNSKY 70
Query: 408 YLVDTAGW---LQREKEKGPASLSVMQSRKNLMRAHVVALVLDA------EEVRAVEEGR 458
Y VD G+ +KE+ V KN +V L++D ++ VE +
Sbjct: 71 YFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMK 130
Query: 459 GL----VVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRI 514
L +++ KMD + +R K+ +E + V + ++ TS++ G G I
Sbjct: 131 SLNIPFTIVLTKMD------KVKMSERAKKL--EEHRKVFSKYGEYTIIPTSSVTGEG-I 181
Query: 515 AVMHQVIDTYQK 526
+ + +I T K
Sbjct: 182 SELLDLISTLLK 193
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 156 VMIIGRPNVGKSALFNRLIRRREALVYNTP 185
V +GR NVGKS+L N L R+ A V TP
Sbjct: 26 VAFVGRSNVGKSSLLNALFNRKIAFVSKTP 55
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%)
Query: 360 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAG 414
+AIVG+PNVGKSTLLN LL + P TR +R R + VDT G
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPG 64
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 156 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 215
V I+G+PNVGKS L N L+ + A + +P TR G+ G + +D+ GL
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPI--SPRPQTTRKRLRGILTEGRRQIVFVDTPGLHK 67
Query: 216 EATS-GSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAM 274
+ G +D+ LA ++++D+R P D V + L+ ++ ++
Sbjct: 68 PMDALGEFMDQE---VYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVG 124
Query: 275 NKCES 279
NK ++
Sbjct: 125 NKLDA 129
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 84/208 (40%), Gaps = 50/208 (24%)
Query: 360 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAG---LTRDSVRV------HFEYQGRTVYLV 410
+ I G PNVGKSTLL AL PE T + V +F YQ ++
Sbjct: 170 VVIAGHPNVGKSTLLKAL-----TTAKPEIASYPFTTRGINVGQFEDGYFRYQ-----II 219
Query: 411 DTAGWLQRE-KEKGPASLSVMQSRKNLMRAHVVALVLD---------AEEVRAVEEGRG- 459
DT G L R E+ + + + L +++ + D E++ EE G
Sbjct: 220 DTPGLLDRPISERNEIEKQAILALRYL--GNLIIYIFDPSEHCGFPLEEQIHLFEEVHGE 277
Query: 460 -----LVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRI 514
+V++NK+D+ L K VKE G+ + SAL+G G
Sbjct: 278 FKDLPFLVVINKIDVADEENIKRLEKFVKE-------------KGLNPIKISALKGTGID 324
Query: 515 AVMHQVIDTYQKWCLRLPTSRLNRWLRK 542
V ++I T + ++ ++ R LR+
Sbjct: 325 LVKEEIIKTLRPLAEKVAREKIERELRR 352
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 25/194 (12%)
Query: 144 DFTKIDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPD----DHVTRDIREGLAK 199
D +D+ + PTV+I G PNVGKS L +AL P+ TR I G +
Sbjct: 159 DLPVVDLEI-PTVVIAGHPNVGKSTLL-------KALTTAKPEIASYPFTTRGINVGQFE 210
Query: 200 LGDLRFKVLDSAG-LETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVG 258
G R++++D+ G L+ + + +++ A + L IF G PL+ ++
Sbjct: 211 DGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGF-PLEEQIH 269
Query: 259 KWLRKHA--PQIKPIVAMNKCE-SLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM-- 313
+ H + +V +NK + + L E + +PI ISA G G+
Sbjct: 270 LFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGL----NPIKISALKGTGIDL 325
Query: 314 --TELYEALRPSVE 325
E+ + LRP E
Sbjct: 326 VKEEIIKTLRPLAE 339
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 32/166 (19%)
Query: 360 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 419
+A+VG PNVGK+T+ NAL R VG G+T + EY+ + +VD G
Sbjct: 6 VALVGNPNVGKTTIFNALTGL-RQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLT 64
Query: 420 KEK------------GPASLSV-MQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNK 466
G A + V + LMR + L L EV + +++++NK
Sbjct: 65 AHSIDELIARNFILDGNADVIVDIVDSTCLMRNLFLTLELFEMEV------KNIILVLNK 118
Query: 467 MDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 512
DLL + K++++ + G+PV+ T+A +G G
Sbjct: 119 FDLLKKKGAKIDIKKMRKEL------------GVPVIPTNAKKGEG 152
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 152 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSA 211
+L TV ++G PNVGK+ +FN L R+ V N P VT + +EG+ + + F V+D
Sbjct: 2 VLKTVALVGNPNVGKTTIFNALTGLRQH-VGNWPG--VTVEKKEGIMEYREKEFLVVDLP 58
Query: 212 GL 213
G+
Sbjct: 59 GI 60
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 362 IVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAG--WLQRE 419
I+G PNVGKSTL+N L +++ G G+T V G+ + L+DT G W + E
Sbjct: 125 IIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV---GKELELLDTPGILWPKFE 181
Query: 420 KE 421
E
Sbjct: 182 DE 183
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 157 MIIGRPNVGKSALFNRLIRRREALVYNTP 185
+IIG PNVGKS L NRL ++ A + P
Sbjct: 124 LIIGIPNVGKSTLINRLAKKNIAKTGDRP 152
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 129 VVEDHKVKPLYEKPVDFTKIDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDH 188
V+ HK +P + V K+ + L V+I+G PN GKS + N+L +R + V P
Sbjct: 78 VITTHKGEP---RKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRASSVGAQPG-- 132
Query: 189 VTRDIREGLAKLGDLRFKVLDSAGL 213
+T+ I+ + G K+LD+ G+
Sbjct: 133 ITKGIQWFSLENG---VKILDTPGI 154
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 418
++ IVG PN GKST++N L + VG + G+T+ E V ++DT G L +
Sbjct: 101 RVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLE---NGVKILDTPGILYK 157
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVL 208
V I+G PNVGKS LFN L R AL N P + +++ G+ L D R L
Sbjct: 3 AVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNV--GVVPLEDERLYAL 53
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 358 LQLAIVGRPNVGKSTLLNAL 377
L + IVG PNVGKSTL NAL
Sbjct: 2 LAVGIVGLPNVGKSTLFNAL 21
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVL 208
V I+G PNVGKS LFN L R AL N P + +++ G+ L D R L
Sbjct: 3 AVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNV--GVVPLEDERLYAL 53
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 358 LQLAIVGRPNVGKSTLLNAL 377
L + IVG PNVGKSTL NAL
Sbjct: 2 LAVGIVGLPNVGKSTLFNAL 21
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 26/161 (16%)
Query: 364 GRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE-K 422
G PNVGKS+ +N ++ V V + T++ HF+++ ++DT G L R E +
Sbjct: 36 GAPNVGKSSFMN-IVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENR 94
Query: 423 GPASLSVMQSRKNLMRAHVVALVLDAEE---------------VRAVEEGRGLVVIVNK- 466
++ + + ++ V+ ++D E +++V + +V+ NK
Sbjct: 95 NTIEMTTITALAHI--NGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKI 152
Query: 467 ----MDLLSGRQNSALYKRVKEAVPQEIQ-TVIPQVTGIPV 502
MD LS N L K++ + V I+ + +TG+ V
Sbjct: 153 DKCNMDSLS-IDNKLLIKQILDNVKNPIKFSSFSTLTGVGV 192
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 33/188 (17%)
Query: 147 KIDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG-DLRF 205
++++ L+ V ++G PN GKS+L + R + P T G+ ++ + RF
Sbjct: 151 RLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKI---APYPFTTLSPNLGVVEVSEEERF 207
Query: 206 KVLDSAGLETEATSGSILDRTAGMTANVL---AKTQFAIFMIDVR----SGLHPLDLEVG 258
+ D G+ A+ G G+ L A+T+ ++++D L L EVG
Sbjct: 208 TLADIPGIIEGASEGK------GLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVG 261
Query: 259 KW----LRKHAPQIKPIVAMNKCESL-HNGTGSLAGA-AAESLMLGFGDPIAISAETGLG 312
+ LR+ + +VA+NK + L +LA A A E L + + +SA TG G
Sbjct: 262 AYDPALLRRPS-----LVALNKVDLLEEEAVKALADALAREGLAV-----LPVSALTGAG 311
Query: 313 MTELYEAL 320
+ L EAL
Sbjct: 312 LPALKEAL 319
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 24/178 (13%)
Query: 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 417
L + ++G PN GK+TL N L R VG AG+T + F V LVD G
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGS-RQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62
Query: 418 REKEKGPASLSVMQSRKNLMR--AHVVALVLDAEEVR--------AVEEGRGLVVIVNKM 467
SL + ++ A ++ V+DA + +E G +V +N +
Sbjct: 63 LTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNXL 122
Query: 468 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQ 525
D+ K+ + EI + ++ G PV+ + GRG I + ID Y+
Sbjct: 123 DIAE-----------KQNIRIEIDALSARL-GCPVIPLVSTRGRG-IEALKLAIDRYK 167
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 155 TVMIIGRPNVGKSALFNRLIRRRE 178
T+ +IG PN GK+ LFN+L R+
Sbjct: 5 TIGLIGNPNSGKTTLFNQLTGSRQ 28
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 417
+ + ++G+ VGKS+ +N+L+ E V V P V V G T+ ++DT G +
Sbjct: 36 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV- 94
Query: 418 REKEKGPASLSVMQSRKNLM--RAHVVALVLDAEEVRAVEEGRGLVVI 463
E G + ++ K + R V L +D +V AV+E VVI
Sbjct: 95 ---EAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVI 139
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 417
+ + ++G+ VGKS+ +N+L+ E V V P V V G T+ ++DT G +
Sbjct: 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV- 95
Query: 418 REKEKGPASLSVMQSRKNLM--RAHVVALVLDAEEVRAVEEGRGLVVI 463
E G + ++ K + R V L +D +V AV+E VVI
Sbjct: 96 ---EAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVI 140
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 24/178 (13%)
Query: 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 417
L + ++G PN GK+TL N L R VG AG+T + F V LVD G
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGS-RQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62
Query: 418 REKEKGPASLSVMQSRKNLMR--AHVVALVLDAEEVR--------AVEEGRGLVVIVNKM 467
SL + ++ A ++ V+DA + +E G +V +N +
Sbjct: 63 LTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNML 122
Query: 468 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQ 525
D+ K+ + EI + ++ G PV+ + GRG I + ID Y+
Sbjct: 123 DIAE-----------KQNIRIEIDALSARL-GCPVIPLVSTRGRG-IEALKLAIDRYK 167
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 155 TVMIIGRPNVGKSALFNRLIRRRE 178
T+ +IG PN GK+ LFN+L R+
Sbjct: 5 TIGLIGNPNSGKTTLFNQLTGSRQ 28
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 24/178 (13%)
Query: 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 417
L + ++G PN GK+TL N L R VG AG+T + F V LVD G
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGS-RQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62
Query: 418 REKEKGPASLSVMQSRKNLMR--AHVVALVLDAEEVR--------AVEEGRGLVVIVNKM 467
SL + ++ A ++ V+DA + +E G +V +N +
Sbjct: 63 LTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNML 122
Query: 468 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQ 525
D+ K+ + EI + ++ G PV+ + GRG I + ID Y+
Sbjct: 123 DIAE-----------KQNIRIEIDALSARL-GCPVIPLVSTRGRG-IEALKLAIDRYK 167
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 155 TVMIIGRPNVGKSALFNRLIRRRE 178
T+ +IG PN GK+ LFN+L R+
Sbjct: 5 TIGLIGNPNSGKTTLFNQLTGSRQ 28
>pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus.
pdb|3DM5|B Chain B, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus
Length = 443
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 21/169 (12%)
Query: 399 HFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDA-------EEV 451
+F+ +G + +VDTAG + +K A + M+ N++ H V LV+D +
Sbjct: 177 YFKSKGVDIIIVDTAGRHKEDK----ALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA 232
Query: 452 RAVEEGRGL-VVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI----PVVFTS 506
A +E + +IV K+D S + AL P + ++ I P F S
Sbjct: 233 LAFKEATPIGSIIVTKLD-GSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVS 291
Query: 507 ALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQ 555
L G G I + + +K + + R+LR G+ + KD AQ
Sbjct: 292 RLLGLGDIQGLLEKFKELEKEV-EIKEEDIERFLR---GKFTLKDMYAQ 336
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 356 LPLQLAIVGRPNVGKSTLLNALLQ 379
+ + IVG PNVGKSTL NAL +
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTK 24
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 158 IIGRPNVGKSALFNRLIR 175
I+G PNVGKS LFN L +
Sbjct: 7 IVGLPNVGKSTLFNALTK 24
>pdb|3TCS|A Chain A, Crystal Structure Of A Putative Racemase From Roseobacter
Denitrificans
pdb|3TCS|B Chain B, Crystal Structure Of A Putative Racemase From Roseobacter
Denitrificans
Length = 388
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 402 YQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLD------AEEVRAVE 455
Y R + VDTA W R K++G V+ L+RA+ ++ D AE ++ +
Sbjct: 99 YLRRAMAGVDTAIWDLRGKQQGKPVAEVLGGTPGLIRAYASSMKRDITPRDEAERLKRLR 158
Query: 456 EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVP 487
+ +G + GR R +E +P
Sbjct: 159 DTQGFTAFKVRAGAEVGRNRDEWPGRTEEIIP 190
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 417
+ + ++G+ VGKS+ +N+L+ E V V P V V G T+ ++DT G +
Sbjct: 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV- 95
Query: 418 REKEKGPASLSVMQSRKNLM--RAHVVALVLDAEEVRAVEEGRGLVVI 463
E G + ++ K + R V L +D +V V+E VVI
Sbjct: 96 ---EAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVI 140
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 417
+ + ++G+ VGKS+ +N+L+ E V V P V V G T+ ++DT G +
Sbjct: 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV- 95
Query: 418 REKEKGPASLSVMQSRKNLM--RAHVVALVLDAEEVRAVEEGRGLVVI 463
E G + ++ K + R V L +D +V V+E VVI
Sbjct: 96 ---EAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVI 140
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAG 414
L + ++G PN GK+TL N L R VG AG+T + F V LVD G
Sbjct: 4 LTVGLIGNPNSGKTTLFNQLTGA-RQRVGNWAGVTVERKEGIFATTDHQVTLVDLPG 59
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 155 TVMIIGRPNVGKSALFNRLIRRRE 178
TV +IG PN GK+ LFN+L R+
Sbjct: 5 TVGLIGNPNSGKTTLFNQLTGARQ 28
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 11/166 (6%)
Query: 157 MIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETE 216
++IG PN GK+ LFN L + V N P VT + + G LG+ ++ D G+ +
Sbjct: 5 LLIGNPNCGKTTLFNALTNANQR-VGNWPG--VTVEKKTGEFLLGEHLIEITDLPGVYSL 61
Query: 217 ATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQI-KP-IVAM 274
+ + + + A + ++ +I+V H LE +L ++ KP +VA+
Sbjct: 62 VANAEGISQDEQIAAQSVIDLEYDC-IINVIDACH---LERHLYLTSQLFELGKPVVVAL 117
Query: 275 NKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 320
N + + S+ ESL LG I I A +G+ L ++L
Sbjct: 118 NMMDIAEHRGISIDTEKLESL-LGCS-VIPIQAHKNIGIPALQQSL 161
>pdb|3LUL|A Chain A, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
pdb|3LUL|B Chain B, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
Length = 272
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 251 HPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 310
HP+ L WLR A + + ++N E++ ++A A ++L + + +
Sbjct: 120 HPVRLISINWLRDKANPLYQLXSVNYLEAIIAQRQAIAVGADDALFFNTENHVTETTCAN 179
Query: 311 LGMTELYEALRPSVEDYML------RVLNDSCTQNNSSTQDVT 347
L + E P VED +L R+++ C Q+ S Q+++
Sbjct: 180 LFLIENNILYTPRVEDGILPGITRARLIS-HCQQHKXSVQEIS 221
>pdb|1T9H|A Chain A, The Crystal Structure Of Yloq, A Circularly Permuted
Gtpase
Length = 307
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 11/58 (18%)
Query: 362 IVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHF---EYQGRTVYLVDTAGWL 416
G+ VGKS+LLNA + PE GL + + H ++ R V L+ T+G L
Sbjct: 178 FAGQSGVGKSSLLNA--------ISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGL 227
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 13/60 (21%)
Query: 360 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 419
+A+VG+ GKS+LL+ALL E D V H +G Y+ A W+Q +
Sbjct: 34 VAVVGQVGCGKSSLLSALLAE------------MDKVEGHVAIKGSVAYVPQQA-WIQND 80
>pdb|1DMT|A Chain A, Structure Of Human Neutral Endopeptidase Complexed With
Phosphoramidon
pdb|1R1H|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1R1I|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1R1J|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1Y8J|A Chain A, Crystal Structure Of Human Nep Complexed With An
Imidazo[4,5- C]pyridine Inhibitor
pdb|2QPJ|A Chain A, Human Nep Complexed With A Bifunctional NepDPP IV
INHIBITOR
pdb|2YB9|A Chain A, Crystal Structure Of Human Neutral Endopeptidase Complexed
With A Heteroarylalanine Diacid
Length = 696
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 90 YQVGSSLKCNLLPEVPR--GFCGVVQNE---ALEDTHVEPEPDGVVEDHKVKPLYEKPVD 144
Y G LK N++PE G ++++E L+D EP+ + +V K K LY ++
Sbjct: 32 YACGGWLKRNVIPETSSRYGNFDILRDELEVVLKDVLQEPKTEDIVAVQKAKALYRSCIN 91
Query: 145 FTKID-------INLLPTV 156
+ ID + LLP +
Sbjct: 92 ESAIDSRGGEPLLKLLPDI 110
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 358 LQLAIVGRPNVGKSTLLNAL 377
L++ IVG PNVGKST N L
Sbjct: 23 LKIGIVGLPNVGKSTFFNVL 42
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 156 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVL 208
+ I+G PNVGKS FN ++ +A N P T D E + D RF L
Sbjct: 25 IGIVGLPNVGKSTFFN-VLTNSQASAENFP--FCTIDPNESRVPVPDERFDFL 74
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 152 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSA 211
L + +IG VGK+ NR++ R YN V + + ++F V D+A
Sbjct: 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTA 69
Query: 212 GLETEA---------TSGSIL--DRTAGMTANVLAK 236
G E +A SG+IL D T+ +T LA+
Sbjct: 70 GQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLAR 105
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 30/165 (18%)
Query: 359 QLAIVGRPNVGKSTLLNALL-QEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 417
++A++G PN GK++L N + RV P + R S V + + + + D G
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVK---KNKDLEIQDLPGIYS 61
Query: 418 REKEKGPASLSVMQSRKNLM--RAHVVALVLDAEEV--------RAVEEGRGLVVIVNKM 467
P S +R L+ RA + V+DA + + +E G + + +N +
Sbjct: 62 M----SPYSPEAKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMI 117
Query: 468 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 512
D+L G+ ++ + G+PVV TSAL+ G
Sbjct: 118 DVLDGQGKKINVDKLSYHL------------GVPVVATSALKQTG 150
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 30/165 (18%)
Query: 359 QLAIVGRPNVGKSTLLNALL-QEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 417
++A++G PN GK++L N + RV P + R S V + + + + D G
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVAVERKSGLVK---KNKDLEIQDLPGIYS 61
Query: 418 REKEKGPASLSVMQSRKNLM--RAHVVALVLDAEEV--------RAVEEGRGLVVIVNKM 467
P S +R L+ RA + V+DA + + +E G + + +N +
Sbjct: 62 M----SPYSPEEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMI 117
Query: 468 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 512
D+L G+ ++ + G+PVV TSAL+ G
Sbjct: 118 DVLDGQGKKINVDKLSYHL------------GVPVVATSALKQTG 150
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 356 LPLQLAIVGRPNVGKSTLLNALLQED----RVLVGPEAGLTR----DSVRVHFEYQGRTV 407
L +VG +GKSTL+N+L D RV+ G + R ++ V E +G +
Sbjct: 17 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKL 76
Query: 408 YL--VDTAGW 415
L VDT G+
Sbjct: 77 RLTVVDTPGY 86
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 17/73 (23%)
Query: 360 LAIVGRPNVGKSTLLNALL-------QEDRVLVG-------PEAGLTRDSVRVHFE---Y 402
+A+VG GK+TL ALL + RV G PEA L R +VR +
Sbjct: 12 VALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF 71
Query: 403 QGRTVYLVDTAGW 415
+G V+L+D G+
Sbjct: 72 RGHRVFLLDAPGY 84
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 30/165 (18%)
Query: 359 QLAIVGRPNVGKSTLLNALL-QEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 417
++A++G PN GK++L N + RV P + R S V + + + + D G
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVSVERKSGLVK---KNKDLEIQDLPGIYS 61
Query: 418 REKEKGPASLSVMQSRKNLM--RAHVVALVLDAEEV--------RAVEEGRGLVVIVNKM 467
P S +R L+ RA + V+DA + + +E G + + +N +
Sbjct: 62 M----SPYSPEEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMI 117
Query: 468 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 512
D+L G+ ++ + G+PVV TSAL+ G
Sbjct: 118 DVLDGQGKKINVDKLSYHL------------GVPVVATSALKQTG 150
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 30/165 (18%)
Query: 359 QLAIVGRPNVGKSTLLNALL-QEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 417
++A++G PN GK++L N + RV P + R S V + + + + D G
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVK---KNKDLEIQDLPGIYS 61
Query: 418 REKEKGPASLSVMQSRKNLM--RAHVVALVLDAEEV--------RAVEEGRGLVVIVNKM 467
P S + +R L+ RA + V+DA + + +E G + + +N +
Sbjct: 62 M----SPYSPAEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMI 117
Query: 468 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 512
D+L G+ ++ + G+PVV TSAL+ G
Sbjct: 118 DVLDGQGKKINVDKLSYHL------------GVPVVATSALKQTG 150
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 27/173 (15%)
Query: 156 VMIIGRPNVGKSALFNRLIRRREALVYN--TPDDHVTRDIREGLAKLGDLRFKVLDSAGL 213
++++G P VGKSAL +LI+ Y+ D + + + +G L D +LD+AG
Sbjct: 6 LVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLD----ILDTAGQ 61
Query: 214 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVA 273
E + RT V FAI +H ++ + K + + ++
Sbjct: 62 EEYSAMRDQYMRTGEGFLCV-----FAINNTKSFEDIHQYREQIKRV--KDSDDVPMVLV 114
Query: 274 MNKCESLHNGTGSLAGAAAES-----LMLGFGDP-IAISAETGLGMTELYEAL 320
NKC+ LAG ES L +G P I SA+T G+ + + L
Sbjct: 115 GNKCD--------LAGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 360 LAIVGRPNVGKSTLLNALLQED----RVLVGPEAGLTR----DSVRVHFEYQGRTVYL-- 409
L +VG +GKSTL+N+L D RV+ G + R ++ V E +G + L
Sbjct: 40 LMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTV 99
Query: 410 VDTAGW 415
VDT G+
Sbjct: 100 VDTPGY 105
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 360 LAIVGRPNVGKSTLLNALLQED----RVLVGPEAGLTR----DSVRVHFEYQGRTVYL-- 409
L +VG +GKSTL+N+L D RV+ G + R ++ V E +G + L
Sbjct: 40 LXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTV 99
Query: 410 VDTAGW 415
VDT G+
Sbjct: 100 VDTPGY 105
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 353 ESKLPLQLAIVGRPNVGKSTLLNALLQ 379
E LP ++A+ GR NVGKS+ +N+L+
Sbjct: 20 EGGLP-EIALAGRSNVGKSSFINSLIN 45
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 17/168 (10%)
Query: 156 VMIIGRPNVGKSALFNRLIRRREALVYN--TPDDHVTRDIREGLAKLGDLRFKVLDSAGL 213
++++G P VGKSAL +LI+ Y+ D + + + +G L D +LD+AG
Sbjct: 6 LVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLD----ILDTAGQ 61
Query: 214 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVA 273
E + RT V FAI +H ++ + K + + ++
Sbjct: 62 EEYSAMRDQYMRTGEGFLCV-----FAINNTKSFEDIHQYREQIKRV--KDSDDVPMVLV 114
Query: 274 MNKCESLHNGTGSLAGAAAESLMLGFGDP-IAISAETGLGMTELYEAL 320
NKC+ ++ A+ L +G P I SA+T G+ + + L
Sbjct: 115 GNKCDL---AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 30/165 (18%)
Query: 359 QLAIVGRPNVGKSTLLNALL-QEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 417
++A++G PN GK++L N + RV P + R S V + + + + D G
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVK---KNKDLEIQDLPGIYS 61
Query: 418 REKEKGPASLSVMQSRKNLM--RAHVVALVLDAEEV--------RAVEEGRGLVVIVNKM 467
P S +R L+ RA + V+DA + + +E G + + +N +
Sbjct: 62 M----SPYSPEEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMI 117
Query: 468 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 512
D+L G+ ++ + G+PVV TSAL+ G
Sbjct: 118 DVLDGQGKKINVDKLSYHL------------GVPVVATSALKQTG 150
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 360 LAIVGRPNVGKSTLLNALLQED----RVLVGPEAGLTR----DSVRVHFEYQGRTVYL-- 409
L +VG +GKSTL+N+L D R++ G + R ++ V E +G + L
Sbjct: 8 LMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEASTVEIEERGVKLRLTV 67
Query: 410 VDTAGW 415
VDT G+
Sbjct: 68 VDTPGY 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,862,120
Number of Sequences: 62578
Number of extensions: 733200
Number of successful extensions: 2596
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 2445
Number of HSP's gapped (non-prelim): 154
length of query: 640
length of database: 14,973,337
effective HSP length: 105
effective length of query: 535
effective length of database: 8,402,647
effective search space: 4495416145
effective search space used: 4495416145
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)