Query 006555
Match_columns 640
No_of_seqs 630 out of 5582
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 00:59:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006555.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006555hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1160 Predicted GTPases [Gen 100.0 3.9E-88 8.4E-93 704.6 46.6 428 154-616 4-443 (444)
2 PRK03003 GTP-binding protein D 100.0 3.4E-71 7.3E-76 611.0 50.4 421 152-613 37-469 (472)
3 TIGR03594 GTPase_EngA ribosome 100.0 7.9E-70 1.7E-74 596.6 50.1 417 155-609 1-429 (429)
4 PRK00093 GTP-binding protein D 100.0 8E-69 1.7E-73 589.3 51.9 418 154-611 2-431 (435)
5 PRK09518 bifunctional cytidyla 100.0 4.1E-67 8.8E-72 603.7 51.2 425 151-614 273-709 (712)
6 KOG1191 Mitochondrial GTPase [ 100.0 4.7E-32 1E-36 282.9 1.2 393 150-616 72-512 (531)
7 COG2262 HflX GTPases [General 99.9 1.3E-27 2.9E-32 246.7 13.5 258 54-326 83-357 (411)
8 PRK11058 GTPase HflX; Provisio 99.9 5.8E-27 1.3E-31 253.6 13.1 257 55-325 89-362 (426)
9 TIGR03156 GTP_HflX GTP-binding 99.9 3.5E-26 7.6E-31 242.2 15.9 253 55-323 81-350 (351)
10 COG1159 Era GTPase [General fu 99.9 1.6E-25 3.4E-30 223.3 16.6 166 155-326 8-173 (298)
11 PF02421 FeoB_N: Ferrous iron 99.9 2.1E-25 4.6E-30 207.4 13.9 146 358-520 1-156 (156)
12 COG1160 Predicted GTPases [Gen 99.9 2.7E-24 5.9E-29 225.7 17.0 218 358-618 4-242 (444)
13 COG0486 ThdF Predicted GTPase 99.9 1.8E-23 3.8E-28 220.2 16.5 155 355-527 215-378 (454)
14 PF02421 FeoB_N: Ferrous iron 99.9 2.7E-23 5.9E-28 193.2 15.5 153 155-320 2-156 (156)
15 TIGR00436 era GTP-binding prot 99.9 7.7E-23 1.7E-27 210.4 18.3 164 155-326 2-165 (270)
16 COG0486 ThdF Predicted GTPase 99.9 8E-23 1.7E-27 215.3 17.9 160 154-326 218-377 (454)
17 COG1159 Era GTPase [General fu 99.9 5.3E-23 1.1E-27 205.2 15.0 164 357-533 6-180 (298)
18 KOG0084 GTPase Rab1/YPT1, smal 99.9 2.4E-22 5.3E-27 187.5 15.0 162 150-326 6-173 (205)
19 PF14714 KH_dom-like: KH-domai 99.9 7.9E-23 1.7E-27 168.1 8.2 80 530-609 1-80 (80)
20 cd01894 EngA1 EngA1 subfamily. 99.9 1.7E-21 3.7E-26 182.6 17.0 156 157-323 1-156 (157)
21 PRK15494 era GTPase Era; Provi 99.9 2.1E-21 4.5E-26 205.5 19.3 166 152-326 51-217 (339)
22 KOG0084 GTPase Rab1/YPT1, smal 99.9 5.5E-22 1.2E-26 185.2 12.9 152 356-529 8-176 (205)
23 PRK12299 obgE GTPase CgtA; Rev 99.9 2.2E-21 4.8E-26 204.0 18.9 172 148-326 153-329 (335)
24 KOG0078 GTP-binding protein SE 99.9 2.5E-21 5.5E-26 183.5 17.1 164 149-326 8-175 (207)
25 TIGR00436 era GTP-binding prot 99.9 1.2E-21 2.6E-26 201.5 15.4 156 359-527 2-166 (270)
26 cd01858 NGP_1 NGP-1. Autoanti 99.9 2.2E-21 4.7E-26 183.3 14.9 156 230-415 2-157 (157)
27 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.9 4E-21 8.6E-26 178.5 14.9 159 154-326 23-186 (221)
28 PRK00089 era GTPase Era; Revie 99.9 6.9E-21 1.5E-25 198.4 18.1 167 154-326 6-172 (292)
29 cd01897 NOG NOG1 is a nucleola 99.9 9.4E-21 2E-25 180.3 17.3 163 154-324 1-167 (168)
30 PRK05291 trmE tRNA modificatio 99.9 1.7E-21 3.8E-26 213.4 13.9 177 132-325 189-370 (449)
31 KOG0078 GTP-binding protein SE 99.9 4E-21 8.6E-26 182.2 14.1 150 355-526 10-175 (207)
32 COG0218 Predicted GTPase [Gene 99.9 1.4E-20 3.1E-25 178.4 17.8 173 145-325 16-197 (200)
33 cd01895 EngA2 EngA2 subfamily. 99.9 2E-20 4.2E-25 178.0 18.3 161 357-523 2-173 (174)
34 KOG0092 GTPase Rab5/YPT51 and 99.9 2.9E-21 6.2E-26 179.7 11.9 158 153-326 5-168 (200)
35 cd04171 SelB SelB subfamily. 99.9 1.6E-20 3.5E-25 177.4 17.2 157 155-322 2-163 (164)
36 KOG0098 GTPase Rab2, small G p 99.9 1.3E-20 2.9E-25 173.6 15.8 160 151-326 4-169 (216)
37 cd04121 Rab40 Rab40 subfamily. 99.9 2.1E-20 4.6E-25 181.8 18.2 160 152-325 5-167 (189)
38 cd01864 Rab19 Rab19 subfamily. 99.9 2.6E-20 5.6E-25 177.0 18.0 158 153-323 3-164 (165)
39 cd04120 Rab12 Rab12 subfamily. 99.8 3.2E-20 7E-25 182.2 18.4 158 155-326 2-164 (202)
40 cd01865 Rab3 Rab3 subfamily. 99.8 3.7E-20 8.1E-25 176.0 18.0 156 154-325 2-163 (165)
41 PRK03003 GTP-binding protein D 99.8 2E-20 4.4E-25 207.0 18.3 171 152-326 210-383 (472)
42 cd04120 Rab12 Rab12 subfamily. 99.8 2E-20 4.3E-25 183.8 15.8 147 358-526 1-164 (202)
43 cd01861 Rab6 Rab6 subfamily. 99.8 5.3E-20 1.2E-24 173.7 18.0 155 155-323 2-160 (161)
44 cd04136 Rap_like Rap-like subf 99.8 3E-20 6.5E-25 175.7 16.3 155 154-323 2-161 (163)
45 cd04106 Rab23_lke Rab23-like s 99.8 4.6E-20 9.9E-25 174.3 17.5 154 155-322 2-160 (162)
46 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 6.7E-20 1.5E-24 180.3 19.3 160 154-326 1-169 (201)
47 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 5.1E-20 1.1E-24 175.0 17.6 157 154-324 3-163 (166)
48 cd01868 Rab11_like Rab11-like. 99.8 5.5E-20 1.2E-24 174.5 17.7 155 153-323 3-163 (165)
49 cd04109 Rab28 Rab28 subfamily. 99.8 5.7E-20 1.2E-24 182.8 18.1 158 154-325 1-166 (215)
50 cd04140 ARHI_like ARHI subfami 99.8 3.8E-20 8.3E-25 176.0 16.1 154 154-322 2-162 (165)
51 cd04122 Rab14 Rab14 subfamily. 99.8 7.5E-20 1.6E-24 174.0 17.8 155 154-324 3-163 (166)
52 cd04145 M_R_Ras_like M-Ras/R-R 99.8 7.8E-20 1.7E-24 173.0 17.8 156 154-324 3-163 (164)
53 cd04144 Ras2 Ras2 subfamily. 99.8 6.5E-20 1.4E-24 178.8 17.6 157 155-326 1-164 (190)
54 cd01866 Rab2 Rab2 subfamily. 99.8 8.8E-20 1.9E-24 174.1 18.2 156 153-324 4-165 (168)
55 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 7.3E-20 1.6E-24 173.9 17.1 156 154-324 1-165 (168)
56 cd04127 Rab27A Rab27a subfamil 99.8 8.2E-20 1.8E-24 176.0 17.6 159 153-325 4-177 (180)
57 PRK12298 obgE GTPase CgtA; Rev 99.8 5.1E-20 1.1E-24 197.4 17.7 171 148-326 154-334 (390)
58 cd01867 Rab8_Rab10_Rab13_like 99.8 9.4E-20 2E-24 173.6 17.7 158 153-324 3-164 (167)
59 PRK15494 era GTPase Era; Provi 99.8 4.9E-20 1.1E-24 195.1 17.3 159 355-527 50-218 (339)
60 COG0370 FeoB Fe2+ transport sy 99.8 3.7E-20 8E-25 202.9 16.7 155 357-528 3-167 (653)
61 cd04142 RRP22 RRP22 subfamily. 99.8 8.8E-20 1.9E-24 178.9 17.7 164 155-324 2-173 (198)
62 cd01895 EngA2 EngA2 subfamily. 99.8 1.7E-19 3.7E-24 171.5 19.1 166 153-322 2-172 (174)
63 cd01898 Obg Obg subfamily. Th 99.8 7.5E-20 1.6E-24 174.3 16.6 162 155-323 2-169 (170)
64 cd04112 Rab26 Rab26 subfamily. 99.8 1.1E-19 2.4E-24 177.3 17.9 160 154-326 1-164 (191)
65 TIGR02729 Obg_CgtA Obg family 99.8 7.3E-20 1.6E-24 192.4 17.6 169 147-324 151-328 (329)
66 KOG0092 GTPase Rab5/YPT51 and 99.8 1.1E-20 2.4E-25 175.8 10.0 147 357-525 5-167 (200)
67 cd01878 HflX HflX subfamily. 99.8 1.9E-20 4.2E-25 184.5 12.3 162 151-323 39-203 (204)
68 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 1.2E-19 2.7E-24 173.9 17.5 157 154-325 3-164 (172)
69 cd04119 RJL RJL (RabJ-Like) su 99.8 1.5E-19 3.2E-24 171.4 17.7 156 155-324 2-166 (168)
70 cd04175 Rap1 Rap1 subgroup. T 99.8 9.5E-20 2.1E-24 172.8 16.4 156 154-324 2-162 (164)
71 cd04142 RRP22 RRP22 subfamily. 99.8 6.4E-20 1.4E-24 179.9 15.5 160 358-530 1-179 (198)
72 smart00173 RAS Ras subfamily o 99.8 8.5E-20 1.8E-24 172.9 15.8 157 154-325 1-162 (164)
73 cd04110 Rab35 Rab35 subfamily. 99.8 2.6E-19 5.7E-24 175.8 19.8 161 152-326 5-168 (199)
74 TIGR03594 GTPase_EngA ribosome 99.8 1.6E-19 3.5E-24 198.3 20.3 170 152-326 171-345 (429)
75 cd04138 H_N_K_Ras_like H-Ras/N 99.8 1.7E-19 3.7E-24 169.9 17.3 154 154-323 2-160 (162)
76 PRK12296 obgE GTPase CgtA; Rev 99.8 1.1E-19 2.4E-24 197.9 18.1 171 148-326 154-341 (500)
77 smart00175 RAB Rab subfamily o 99.8 2.5E-19 5.5E-24 169.3 18.0 156 154-325 1-162 (164)
78 PRK12297 obgE GTPase CgtA; Rev 99.8 2.2E-19 4.7E-24 193.5 19.6 168 148-326 153-328 (424)
79 KOG0079 GTP-binding protein H- 99.8 4.1E-20 8.8E-25 163.5 11.3 160 151-326 6-170 (198)
80 cd04145 M_R_Ras_like M-Ras/R-R 99.8 9.2E-20 2E-24 172.5 14.7 145 357-524 2-163 (164)
81 COG1084 Predicted GTPase [Gene 99.8 4.6E-20 1E-24 185.5 13.1 196 116-323 135-334 (346)
82 cd04121 Rab40 Rab40 subfamily. 99.8 1.4E-19 3E-24 176.0 16.0 148 356-525 5-167 (189)
83 cd01890 LepA LepA subfamily. 99.8 1.6E-19 3.4E-24 173.8 16.2 155 155-325 2-177 (179)
84 cd01874 Cdc42 Cdc42 subfamily. 99.8 1.7E-19 3.7E-24 173.4 16.5 155 154-322 2-172 (175)
85 cd04164 trmE TrmE (MnmE, ThdF, 99.8 3.2E-19 6.9E-24 167.0 17.9 154 154-323 2-155 (157)
86 cd04117 Rab15 Rab15 subfamily. 99.8 3.8E-19 8.2E-24 168.6 18.5 153 155-323 2-160 (161)
87 KOG0098 GTPase Rab2, small G p 99.8 4.2E-20 9.1E-25 170.3 11.2 148 357-526 6-169 (216)
88 cd04113 Rab4 Rab4 subfamily. 99.8 3.1E-19 6.7E-24 168.7 17.5 154 154-323 1-160 (161)
89 cd04124 RabL2 RabL2 subfamily. 99.8 2.7E-19 5.8E-24 169.5 17.0 154 155-325 2-158 (161)
90 PRK00093 GTP-binding protein D 99.8 2.5E-19 5.5E-24 197.1 19.4 171 152-326 172-345 (435)
91 cd01860 Rab5_related Rab5-rela 99.8 2.1E-19 4.5E-24 170.0 16.2 157 154-324 2-162 (163)
92 cd04176 Rap2 Rap2 subgroup. T 99.8 1.3E-19 2.9E-24 171.5 14.7 155 154-323 2-161 (163)
93 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 1.6E-19 3.5E-24 174.6 15.5 156 153-322 5-177 (182)
94 cd04133 Rop_like Rop subfamily 99.8 1.7E-19 3.7E-24 173.4 15.4 157 154-324 2-172 (176)
95 cd04131 Rnd Rnd subfamily. Th 99.8 2.9E-19 6.2E-24 172.4 16.9 155 154-322 2-173 (178)
96 cd04101 RabL4 RabL4 (Rab-like4 99.8 5E-19 1.1E-23 167.6 18.2 157 155-323 2-162 (164)
97 KOG0080 GTPase Rab18, small G 99.8 7.9E-20 1.7E-24 163.9 11.7 158 152-325 10-174 (209)
98 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 2.7E-19 5.9E-24 178.8 16.9 160 153-326 13-189 (232)
99 KOG0087 GTPase Rab11/YPT3, sma 99.8 1.1E-19 2.4E-24 171.5 13.0 161 150-326 11-177 (222)
100 TIGR03598 GTPase_YsxC ribosome 99.8 4.6E-19 9.9E-24 171.1 17.6 160 148-314 13-179 (179)
101 cd04163 Era Era subfamily. Er 99.8 6.9E-19 1.5E-23 165.8 18.5 164 154-323 4-167 (168)
102 PRK05291 trmE tRNA modificatio 99.8 1.6E-19 3.4E-24 198.0 16.2 150 356-526 214-371 (449)
103 cd04126 Rab20 Rab20 subfamily. 99.8 5.6E-19 1.2E-23 175.5 18.6 158 155-328 2-193 (220)
104 TIGR00450 mnmE_trmE_thdF tRNA 99.8 3.8E-19 8.3E-24 193.9 19.0 160 152-326 202-361 (442)
105 cd01879 FeoB Ferrous iron tran 99.8 1.6E-19 3.6E-24 169.5 14.1 145 362-523 1-155 (158)
106 TIGR00450 mnmE_trmE_thdF tRNA 99.8 2.3E-19 5.1E-24 195.5 17.3 151 356-526 202-361 (442)
107 cd01862 Rab7 Rab7 subfamily. 99.8 6.5E-19 1.4E-23 168.0 18.3 160 154-326 1-168 (172)
108 PTZ00369 Ras-like protein; Pro 99.8 2.6E-19 5.5E-24 174.4 15.8 159 153-326 5-168 (189)
109 TIGR03156 GTP_HflX GTP-binding 99.8 1.5E-19 3.2E-24 191.7 15.1 146 357-522 189-349 (351)
110 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 7.8E-20 1.7E-24 169.9 11.1 147 357-525 22-185 (221)
111 PRK12299 obgE GTPase CgtA; Rev 99.8 2.3E-19 5E-24 188.7 16.2 154 358-526 159-329 (335)
112 PLN03118 Rab family protein; P 99.8 3.9E-19 8.5E-24 176.2 16.9 159 153-326 14-178 (211)
113 PRK00454 engB GTP-binding prot 99.8 7.2E-19 1.6E-23 171.8 18.6 172 146-325 17-194 (196)
114 KOG0394 Ras-related GTPase [Ge 99.8 3.3E-20 7.2E-25 170.7 8.2 154 356-529 8-182 (210)
115 cd04136 Rap_like Rap-like subf 99.8 1.9E-19 4E-24 170.2 13.7 143 358-523 2-161 (163)
116 cd04175 Rap1 Rap1 subgroup. T 99.8 1.9E-19 4.2E-24 170.7 13.9 144 358-524 2-162 (164)
117 cd04125 RabA_like RabA-like su 99.8 8.2E-19 1.8E-23 170.6 18.6 159 154-326 1-163 (188)
118 cd04171 SelB SelB subfamily. 99.8 3.4E-19 7.3E-24 168.4 15.4 148 359-522 2-163 (164)
119 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 2.6E-19 5.6E-24 170.2 14.7 146 358-525 3-164 (166)
120 smart00174 RHO Rho (Ras homolo 99.8 1.7E-19 3.6E-24 172.8 13.4 155 156-324 1-171 (174)
121 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 2.1E-19 4.6E-24 172.3 14.1 147 357-526 2-165 (172)
122 PLN03110 Rab GTPase; Provision 99.8 8.4E-19 1.8E-23 174.5 18.8 162 152-327 11-176 (216)
123 TIGR03596 GTPase_YlqF ribosome 99.8 3.7E-19 7.9E-24 183.5 16.6 167 225-418 10-176 (276)
124 cd01849 YlqF_related_GTPase Yl 99.8 3.4E-19 7.3E-24 167.9 14.9 154 238-415 1-155 (155)
125 cd01859 MJ1464 MJ1464. This f 99.8 4E-19 8.8E-24 167.5 15.5 153 228-415 4-156 (156)
126 cd01892 Miro2 Miro2 subfamily. 99.8 2.8E-19 6E-24 171.0 14.5 158 153-324 4-165 (169)
127 cd04111 Rab39 Rab39 subfamily. 99.8 5.7E-19 1.2E-23 175.0 17.2 158 154-327 3-168 (211)
128 PRK09518 bifunctional cytidyla 99.8 4E-19 8.7E-24 205.7 18.7 171 152-326 449-622 (712)
129 KOG0394 Ras-related GTPase [Ge 99.8 1.7E-19 3.8E-24 166.0 12.4 162 151-325 7-178 (210)
130 cd01856 YlqF YlqF. Proteins o 99.8 4.7E-19 1E-23 169.7 16.0 163 225-415 8-170 (171)
131 cd04112 Rab26 Rab26 subfamily. 99.8 2.6E-19 5.6E-24 174.7 14.4 148 358-527 1-165 (191)
132 cd04149 Arf6 Arf6 subfamily. 99.8 4.1E-19 8.9E-24 169.6 15.4 145 356-522 8-167 (168)
133 smart00173 RAS Ras subfamily o 99.8 2.8E-19 6.1E-24 169.4 14.2 145 358-525 1-162 (164)
134 cd01898 Obg Obg subfamily. Th 99.8 2.9E-19 6.3E-24 170.2 14.3 150 359-523 2-169 (170)
135 cd04138 H_N_K_Ras_like H-Ras/N 99.8 6.8E-19 1.5E-23 165.8 16.7 142 358-523 2-160 (162)
136 cd01855 YqeH YqeH. YqeH is an 99.8 2.5E-19 5.4E-24 174.7 14.1 152 226-415 24-190 (190)
137 cd01897 NOG NOG1 is a nucleola 99.8 5.4E-19 1.2E-23 168.1 16.1 149 359-523 2-166 (168)
138 cd01871 Rac1_like Rac1-like su 99.8 5.4E-19 1.2E-23 169.8 16.2 155 154-322 2-172 (174)
139 PLN03118 Rab family protein; P 99.8 1.5E-19 3.3E-24 179.2 12.7 148 356-526 13-178 (211)
140 cd04164 trmE TrmE (MnmE, ThdF, 99.8 8.4E-19 1.8E-23 164.1 17.0 146 358-523 2-155 (157)
141 cd04122 Rab14 Rab14 subfamily. 99.8 3.3E-19 7.2E-24 169.6 14.5 144 358-524 3-163 (166)
142 KOG0410 Predicted GTP binding 99.8 3.1E-20 6.8E-25 184.8 7.4 248 57-326 73-342 (410)
143 cd04132 Rho4_like Rho4-like su 99.8 8.5E-19 1.8E-23 170.2 17.3 158 155-326 2-168 (187)
144 cd01894 EngA1 EngA1 subfamily. 99.8 5E-19 1.1E-23 165.8 15.2 146 361-523 1-156 (157)
145 cd01867 Rab8_Rab10_Rab13_like 99.8 4E-19 8.6E-24 169.3 14.7 147 357-525 3-165 (167)
146 cd01874 Cdc42 Cdc42 subfamily. 99.8 3E-19 6.5E-24 171.8 13.6 154 358-523 2-173 (175)
147 cd01875 RhoG RhoG subfamily. 99.8 5.2E-19 1.1E-23 172.6 15.5 157 154-324 4-176 (191)
148 cd00877 Ran Ran (Ras-related n 99.8 4.6E-19 1E-23 168.9 14.8 156 154-325 1-159 (166)
149 cd04127 Rab27A Rab27a subfamil 99.8 3.2E-19 6.9E-24 171.9 13.8 146 357-524 4-176 (180)
150 cd04143 Rhes_like Rhes_like su 99.8 1.4E-18 3E-23 176.0 19.0 156 155-324 2-170 (247)
151 cd04144 Ras2 Ras2 subfamily. 99.8 3.6E-19 7.9E-24 173.5 14.2 145 359-526 1-164 (190)
152 cd04116 Rab9 Rab9 subfamily. 99.8 1.3E-18 2.9E-23 166.0 17.8 157 153-323 5-169 (170)
153 cd04149 Arf6 Arf6 subfamily. 99.8 8.6E-19 1.9E-23 167.4 16.5 152 153-322 9-167 (168)
154 cd04154 Arl2 Arl2 subfamily. 99.8 5.4E-19 1.2E-23 169.5 15.1 152 153-322 14-172 (173)
155 cd04134 Rho3 Rho3 subfamily. 99.8 3.1E-19 6.6E-24 173.9 13.6 156 155-324 2-173 (189)
156 PRK12296 obgE GTPase CgtA; Rev 99.8 5.1E-19 1.1E-23 192.8 16.7 162 358-535 160-350 (500)
157 KOG1423 Ras-like GTPase ERA [C 99.8 4.5E-19 9.8E-24 175.5 14.5 170 153-325 72-271 (379)
158 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 1.7E-18 3.6E-23 165.7 18.1 156 155-326 2-166 (170)
159 cd04139 RalA_RalB RalA/RalB su 99.8 1.3E-18 2.9E-23 164.2 17.2 156 154-324 1-161 (164)
160 cd04123 Rab21 Rab21 subfamily. 99.8 1.6E-18 3.6E-23 163.2 17.7 156 154-323 1-160 (162)
161 cd01857 HSR1_MMR1 HSR1/MMR1. 99.8 8.1E-19 1.8E-23 162.6 15.3 137 228-416 3-139 (141)
162 cd04109 Rab28 Rab28 subfamily. 99.8 4.9E-19 1.1E-23 176.1 14.7 147 358-526 1-167 (215)
163 cd01879 FeoB Ferrous iron tran 99.8 8E-19 1.7E-23 164.8 15.4 153 158-323 1-155 (158)
164 cd01868 Rab11_like Rab11-like. 99.8 5.3E-19 1.2E-23 167.7 14.1 145 357-523 3-163 (165)
165 KOG0093 GTPase Rab3, small G p 99.8 9.5E-19 2.1E-23 154.8 14.4 163 151-329 19-187 (193)
166 cd04128 Spg1 Spg1p. Spg1p (se 99.8 1.3E-18 2.9E-23 168.3 17.0 158 154-325 1-166 (182)
167 PRK09554 feoB ferrous iron tra 99.8 9.4E-19 2E-23 201.7 18.7 156 357-525 3-168 (772)
168 PRK09563 rbgA GTPase YlqF; Rev 99.8 1.2E-18 2.5E-23 180.7 17.7 167 225-418 13-179 (287)
169 cd04118 Rab24 Rab24 subfamily. 99.8 1.5E-18 3.3E-23 169.3 17.5 158 155-325 2-166 (193)
170 PRK04213 GTP-binding protein; 99.8 1.5E-18 3.3E-23 170.5 17.6 162 152-326 8-193 (201)
171 PRK00089 era GTPase Era; Revie 99.8 7.5E-19 1.6E-23 183.1 16.0 157 357-526 5-172 (292)
172 cd04160 Arfrp1 Arfrp1 subfamil 99.8 5.9E-19 1.3E-23 167.7 13.9 152 155-322 1-166 (167)
173 cd01891 TypA_BipA TypA (tyrosi 99.8 1.4E-18 3.1E-23 169.9 17.0 150 154-318 3-175 (194)
174 cd04157 Arl6 Arl6 subfamily. 99.8 9.2E-19 2E-23 165.3 15.0 149 155-322 1-161 (162)
175 KOG1191 Mitochondrial GTPase [ 99.8 4.7E-19 1E-23 185.9 14.2 171 153-326 268-451 (531)
176 cd04130 Wrch_1 Wrch-1 subfamil 99.8 1E-18 2.3E-23 167.4 15.5 154 154-321 1-170 (173)
177 cd01863 Rab18 Rab18 subfamily. 99.8 1.5E-18 3.3E-23 163.8 16.2 155 154-323 1-160 (161)
178 KOG0091 GTPase Rab39, small G 99.8 4.2E-19 9.1E-24 159.8 11.6 161 154-330 9-178 (213)
179 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 1.1E-18 2.3E-23 171.7 15.8 148 358-526 1-169 (201)
180 cd04115 Rab33B_Rab33A Rab33B/R 99.8 2.5E-18 5.5E-23 164.3 17.8 157 154-324 3-168 (170)
181 cd00154 Rab Rab family. Rab G 99.8 1.7E-18 3.7E-23 161.7 16.3 154 154-321 1-158 (159)
182 cd01865 Rab3 Rab3 subfamily. 99.8 9.3E-19 2E-23 166.4 14.5 145 358-524 2-162 (165)
183 cd04158 ARD1 ARD1 subfamily. 99.8 8E-19 1.7E-23 167.7 14.1 151 155-325 1-161 (169)
184 cd04117 Rab15 Rab15 subfamily. 99.8 8.9E-19 1.9E-23 166.0 14.3 144 358-523 1-160 (161)
185 cd04146 RERG_RasL11_like RERG/ 99.8 7.6E-19 1.6E-23 166.9 13.9 156 155-324 1-163 (165)
186 cd04114 Rab30 Rab30 subfamily. 99.8 3.4E-18 7.4E-23 162.8 18.4 157 153-323 7-167 (169)
187 cd04150 Arf1_5_like Arf1-Arf5- 99.8 2E-18 4.4E-23 163.3 16.6 150 155-322 2-158 (159)
188 cd04133 Rop_like Rop subfamily 99.8 7.3E-19 1.6E-23 169.1 13.7 154 358-524 2-172 (176)
189 PLN03071 GTP-binding nuclear p 99.8 9.8E-19 2.1E-23 174.3 15.0 159 152-326 12-173 (219)
190 TIGR02528 EutP ethanolamine ut 99.8 1.1E-18 2.4E-23 161.5 14.4 140 155-321 2-141 (142)
191 cd01881 Obg_like The Obg-like 99.8 5.3E-19 1.1E-23 169.2 12.6 159 158-323 1-175 (176)
192 PLN00223 ADP-ribosylation fact 99.8 2.6E-18 5.7E-23 166.1 17.4 152 153-325 17-178 (181)
193 cd04119 RJL RJL (RabJ-Like) su 99.8 1.1E-18 2.4E-23 165.4 14.3 144 358-524 1-166 (168)
194 cd04106 Rab23_lke Rab23-like s 99.8 9.6E-19 2.1E-23 165.3 13.9 143 358-522 1-160 (162)
195 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 8.8E-19 1.9E-23 169.5 13.9 156 356-523 4-178 (182)
196 cd01893 Miro1 Miro1 subfamily. 99.8 1.6E-18 3.4E-23 165.1 15.3 156 155-324 2-163 (166)
197 cd04154 Arl2 Arl2 subfamily. 99.8 1.6E-18 3.5E-23 166.2 15.3 145 356-522 13-172 (173)
198 KOG0087 GTPase Rab11/YPT3, sma 99.8 3.9E-19 8.5E-24 167.7 10.7 149 355-525 12-176 (222)
199 cd04150 Arf1_5_like Arf1-Arf5- 99.8 2E-18 4.4E-23 163.3 15.8 143 358-522 1-158 (159)
200 cd00157 Rho Rho (Ras homology) 99.8 9.5E-19 2.1E-23 166.7 13.6 154 155-322 2-170 (171)
201 cd00881 GTP_translation_factor 99.8 2.2E-18 4.7E-23 166.8 16.3 157 155-325 1-187 (189)
202 cd04140 ARHI_like ARHI subfami 99.8 1.1E-18 2.3E-23 166.0 13.9 142 358-522 2-162 (165)
203 PLN03108 Rab family protein; P 99.8 4.3E-18 9.4E-23 168.6 18.7 161 152-326 5-169 (210)
204 cd01889 SelB_euk SelB subfamil 99.8 1.4E-18 3.1E-23 169.6 15.0 155 358-524 1-185 (192)
205 cd04135 Tc10 TC10 subfamily. 99.8 9.2E-19 2E-23 167.6 13.2 156 154-323 1-172 (174)
206 cd01861 Rab6 Rab6 subfamily. 99.8 1.4E-18 3.1E-23 163.9 14.3 144 358-523 1-160 (161)
207 cd04131 Rnd Rnd subfamily. Th 99.8 1.1E-18 2.3E-23 168.4 13.4 154 358-523 2-174 (178)
208 cd01875 RhoG RhoG subfamily. 99.8 1.5E-18 3.3E-23 169.3 14.7 156 357-524 3-176 (191)
209 cd04151 Arl1 Arl1 subfamily. 99.8 1.9E-18 4E-23 163.0 14.8 142 359-522 1-157 (158)
210 cd04151 Arl1 Arl1 subfamily. 99.8 3.2E-18 7E-23 161.4 16.5 150 155-322 1-157 (158)
211 cd01866 Rab2 Rab2 subfamily. 99.8 1.7E-18 3.7E-23 165.1 14.7 146 357-524 4-165 (168)
212 cd04176 Rap2 Rap2 subgroup. T 99.8 9.9E-19 2.1E-23 165.5 13.0 143 358-523 2-161 (163)
213 cd01889 SelB_euk SelB subfamil 99.8 2.3E-18 4.9E-23 168.2 15.8 157 155-325 2-186 (192)
214 cd04126 Rab20 Rab20 subfamily. 99.8 1.2E-18 2.7E-23 173.0 14.1 154 358-525 1-190 (220)
215 cd00876 Ras Ras family. The R 99.8 3.4E-18 7.4E-23 160.7 16.4 154 155-323 1-159 (160)
216 PTZ00133 ADP-ribosylation fact 99.8 3.5E-18 7.7E-23 165.4 16.9 153 153-326 17-179 (182)
217 cd04124 RabL2 RabL2 subfamily. 99.8 2.7E-18 5.8E-23 162.7 15.6 144 358-526 1-159 (161)
218 cd04160 Arfrp1 Arfrp1 subfamil 99.8 1.4E-18 3.1E-23 165.0 13.8 148 359-522 1-166 (167)
219 PTZ00133 ADP-ribosylation fact 99.8 3.7E-18 8E-23 165.2 16.8 148 357-526 17-179 (182)
220 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 3.1E-18 6.7E-23 165.9 16.3 151 357-526 3-171 (183)
221 TIGR02729 Obg_CgtA Obg family 99.8 2.7E-18 5.8E-23 180.5 17.1 150 358-523 158-327 (329)
222 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 2E-18 4.4E-23 172.6 15.3 158 357-526 13-189 (232)
223 cd04111 Rab39 Rab39 subfamily. 99.8 1.1E-18 2.3E-23 173.0 13.1 151 357-529 2-170 (211)
224 cd04125 RabA_like RabA-like su 99.8 1.3E-18 2.8E-23 169.2 13.5 147 358-526 1-163 (188)
225 cd04177 RSR1 RSR1 subgroup. R 99.8 2.7E-18 5.9E-23 163.7 15.4 157 154-324 2-163 (168)
226 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 2E-18 4.3E-23 167.3 14.5 157 154-326 4-171 (183)
227 cd01871 Rac1_like Rac1-like su 99.8 1.2E-18 2.5E-23 167.5 12.8 153 358-522 2-172 (174)
228 PTZ00369 Ras-like protein; Pro 99.8 2.2E-18 4.7E-23 167.9 14.9 147 357-526 5-168 (189)
229 KOG0095 GTPase Rab30, small G 99.8 8.6E-19 1.9E-23 155.2 10.7 146 357-524 7-168 (213)
230 smart00177 ARF ARF-like small 99.8 4.4E-18 9.5E-23 163.6 16.6 151 153-324 13-173 (175)
231 cd04113 Rab4 Rab4 subfamily. 99.8 1.6E-18 3.6E-23 163.7 13.4 144 358-523 1-160 (161)
232 KOG0095 GTPase Rab30, small G 99.8 2.9E-18 6.3E-23 151.9 13.8 161 150-326 4-170 (213)
233 cd01864 Rab19 Rab19 subfamily. 99.8 2.2E-18 4.7E-23 163.7 14.1 146 357-523 3-164 (165)
234 PRK12298 obgE GTPase CgtA; Rev 99.8 2.6E-18 5.7E-23 184.2 16.2 154 359-526 161-334 (390)
235 cd04166 CysN_ATPS CysN_ATPS su 99.8 2.1E-18 4.6E-23 170.6 14.2 152 155-317 1-186 (208)
236 smart00175 RAB Rab subfamily o 99.8 2.9E-18 6.3E-23 162.1 14.5 145 358-525 1-162 (164)
237 PLN03110 Rab GTPase; Provision 99.8 2.5E-18 5.4E-23 171.1 14.7 149 356-526 11-175 (216)
238 cd04157 Arl6 Arl6 subfamily. 99.8 2.5E-18 5.5E-23 162.3 14.0 142 359-522 1-161 (162)
239 PLN00223 ADP-ribosylation fact 99.8 5.6E-18 1.2E-22 163.9 16.6 147 357-525 17-178 (181)
240 cd00877 Ran Ran (Ras-related n 99.8 2.1E-18 4.5E-23 164.4 13.4 143 358-525 1-159 (166)
241 cd04110 Rab35 Rab35 subfamily. 99.8 3.6E-18 7.9E-23 167.7 15.5 148 357-526 6-168 (199)
242 smart00177 ARF ARF-like small 99.8 5.7E-18 1.2E-22 162.9 16.4 146 357-524 13-173 (175)
243 PRK11058 GTPase HflX; Provisio 99.8 1.9E-18 4.2E-23 187.3 14.6 150 358-526 198-363 (426)
244 cd04132 Rho4_like Rho4-like su 99.8 2.5E-18 5.5E-23 166.8 14.0 152 358-528 1-170 (187)
245 cd04101 RabL4 RabL4 (Rab-like4 99.8 3.6E-18 7.9E-23 161.7 14.7 146 358-524 1-163 (164)
246 smart00178 SAR Sar1p-like memb 99.8 3E-18 6.6E-23 166.1 14.5 153 153-323 17-183 (184)
247 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 4.5E-18 9.7E-23 163.4 15.4 144 357-522 15-173 (174)
248 cd04156 ARLTS1 ARLTS1 subfamil 99.8 4.7E-18 1E-22 160.3 15.3 150 155-322 1-159 (160)
249 PF00009 GTP_EFTU: Elongation 99.8 2.5E-18 5.4E-23 167.3 13.8 158 154-325 4-187 (188)
250 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 6.7E-18 1.4E-22 162.2 16.5 151 153-322 15-173 (174)
251 cd01890 LepA LepA subfamily. 99.8 5.5E-18 1.2E-22 163.0 15.9 145 359-523 2-175 (179)
252 cd04115 Rab33B_Rab33A Rab33B/R 99.8 4E-18 8.7E-23 162.9 14.6 146 358-524 3-168 (170)
253 cd01860 Rab5_related Rab5-rela 99.8 2.3E-18 5E-23 162.8 12.6 143 358-523 2-161 (163)
254 KOG0086 GTPase Rab4, small G p 99.8 5.2E-18 1.1E-22 150.9 13.8 160 150-325 6-171 (214)
255 cd04116 Rab9 Rab9 subfamily. 99.8 6.1E-18 1.3E-22 161.4 15.2 145 357-523 5-169 (170)
256 cd04148 RGK RGK subfamily. Th 99.8 6.1E-18 1.3E-22 168.9 15.7 156 154-325 1-163 (221)
257 cd04158 ARD1 ARD1 subfamily. 99.8 8.3E-18 1.8E-22 160.6 16.1 145 359-524 1-160 (169)
258 KOG1423 Ras-like GTPase ERA [C 99.8 4.2E-18 9.1E-23 168.7 14.2 195 353-547 68-302 (379)
259 PRK15467 ethanolamine utilizat 99.8 8.3E-18 1.8E-22 158.9 15.7 145 155-326 3-148 (158)
260 cd04147 Ras_dva Ras-dva subfam 99.8 9E-18 1.9E-22 164.8 16.5 156 155-325 1-163 (198)
261 cd01870 RhoA_like RhoA-like su 99.8 4.9E-18 1.1E-22 162.7 14.3 156 154-323 2-173 (175)
262 cd04118 Rab24 Rab24 subfamily. 99.8 6.4E-18 1.4E-22 164.9 15.2 151 358-526 1-167 (193)
263 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 3.2E-18 7E-23 162.8 12.7 152 155-322 1-163 (164)
264 cd04146 RERG_RasL11_like RERG/ 99.8 2.8E-18 6.1E-23 163.0 12.3 144 359-524 1-163 (165)
265 cd00878 Arf_Arl Arf (ADP-ribos 99.8 7.2E-18 1.6E-22 158.8 14.8 142 359-522 1-157 (158)
266 cd04103 Centaurin_gamma Centau 99.8 1.2E-17 2.7E-22 157.8 16.3 148 155-322 2-156 (158)
267 PLN03071 GTP-binding nuclear p 99.8 3.8E-18 8.3E-23 170.1 13.5 146 356-526 12-173 (219)
268 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 8.6E-18 1.9E-22 160.8 15.4 148 359-526 2-166 (170)
269 cd04128 Spg1 Spg1p. Spg1p (se 99.8 1.1E-17 2.3E-22 162.0 15.9 150 358-525 1-166 (182)
270 cd01873 RhoBTB RhoBTB subfamil 99.8 9.8E-18 2.1E-22 163.9 15.7 154 154-322 3-193 (195)
271 cd00878 Arf_Arl Arf (ADP-ribos 99.8 8.6E-18 1.9E-22 158.2 14.8 150 155-322 1-157 (158)
272 cd04130 Wrch_1 Wrch-1 subfamil 99.8 2.7E-18 5.9E-23 164.6 11.5 153 358-522 1-171 (173)
273 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 9.6E-18 2.1E-22 166.8 15.8 156 154-323 2-174 (222)
274 cd01878 HflX HflX subfamily. 99.8 5.5E-18 1.2E-22 167.0 14.0 148 357-523 41-203 (204)
275 PRK04213 GTP-binding protein; 99.8 1E-17 2.2E-22 164.6 15.9 158 356-525 8-192 (201)
276 cd04135 Tc10 TC10 subfamily. 99.8 4.2E-18 9.1E-23 163.1 12.7 154 358-523 1-172 (174)
277 cd04156 ARLTS1 ARLTS1 subfamil 99.8 7.9E-18 1.7E-22 158.7 14.4 142 359-522 1-159 (160)
278 KOG0079 GTP-binding protein H- 99.8 1.4E-18 3E-23 153.8 8.4 150 357-528 8-172 (198)
279 cd01863 Rab18 Rab18 subfamily. 99.8 1.1E-17 2.3E-22 158.0 15.1 142 358-523 1-160 (161)
280 KOG0080 GTPase Rab18, small G 99.8 1.4E-18 3E-23 156.0 8.4 148 356-525 10-174 (209)
281 smart00174 RHO Rho (Ras homolo 99.8 4E-18 8.7E-23 163.2 12.3 153 360-524 1-171 (174)
282 cd04139 RalA_RalB RalA/RalB su 99.8 7E-18 1.5E-22 159.3 13.7 144 358-525 1-162 (164)
283 PF00009 GTP_EFTU: Elongation 99.8 9.2E-18 2E-22 163.4 14.9 152 358-524 4-186 (188)
284 PRK12297 obgE GTPase CgtA; Rev 99.8 2E-17 4.3E-22 178.4 18.4 151 358-527 159-329 (424)
285 cd04114 Rab30 Rab30 subfamily. 99.8 1E-17 2.3E-22 159.4 14.5 145 357-523 7-167 (169)
286 PF01926 MMR_HSR1: 50S ribosom 99.8 1E-17 2.3E-22 149.6 13.7 116 155-276 1-116 (116)
287 cd04177 RSR1 RSR1 subgroup. R 99.8 9.6E-18 2.1E-22 159.9 14.2 145 358-524 2-163 (168)
288 cd04134 Rho3 Rho3 subfamily. 99.8 6E-18 1.3E-22 164.8 12.9 155 359-525 2-174 (189)
289 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.9E-17 4.1E-22 157.3 16.0 150 359-524 2-165 (168)
290 cd01881 Obg_like The Obg-like 99.8 5.2E-18 1.1E-22 162.3 12.2 146 362-522 1-174 (176)
291 cd00879 Sar1 Sar1 subfamily. 99.8 1.5E-17 3.2E-22 161.9 15.5 153 153-323 19-189 (190)
292 cd04163 Era Era subfamily. Er 99.8 3.1E-17 6.8E-22 154.5 17.2 154 357-522 3-166 (168)
293 smart00176 RAN Ran (Ras-relate 99.8 2E-17 4.3E-22 162.3 16.3 152 159-326 1-155 (200)
294 PF00071 Ras: Ras family; Int 99.8 2.1E-17 4.6E-22 156.1 16.0 156 155-324 1-160 (162)
295 PLN03108 Rab family protein; P 99.8 1.2E-17 2.6E-22 165.4 14.9 147 357-525 6-168 (210)
296 cd04137 RheB Rheb (Ras Homolog 99.8 2.9E-17 6.4E-22 158.2 17.2 158 154-326 2-164 (180)
297 TIGR00437 feoB ferrous iron tr 99.8 1.1E-17 2.4E-22 188.8 16.3 146 364-524 1-154 (591)
298 cd04143 Rhes_like Rhes_like su 99.8 1.4E-17 3E-22 168.7 15.3 145 358-524 1-170 (247)
299 KOG1489 Predicted GTP-binding 99.7 9.3E-18 2E-22 167.3 13.5 166 148-322 191-364 (366)
300 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 1.1E-17 2.4E-22 166.3 14.2 155 358-524 2-175 (222)
301 PRK09554 feoB ferrous iron tra 99.7 2.3E-17 4.9E-22 190.4 18.8 159 154-324 4-167 (772)
302 cd01884 EF_Tu EF-Tu subfamily. 99.7 2.6E-17 5.7E-22 160.6 16.4 144 358-514 3-172 (195)
303 cd04161 Arl2l1_Arl13_like Arl2 99.7 2.5E-17 5.3E-22 157.2 15.4 152 155-322 1-166 (167)
304 cd01892 Miro2 Miro2 subfamily. 99.7 8.7E-18 1.9E-22 160.6 12.2 148 356-524 3-165 (169)
305 cd00881 GTP_translation_factor 99.7 2E-17 4.4E-22 160.0 14.8 151 359-523 1-185 (189)
306 COG1163 DRG Predicted GTPase [ 99.7 6.5E-18 1.4E-22 169.2 11.4 161 150-324 60-288 (365)
307 KOG0086 GTPase Rab4, small G p 99.7 1.2E-17 2.7E-22 148.5 11.8 147 356-525 8-171 (214)
308 cd04103 Centaurin_gamma Centau 99.7 1.3E-17 2.9E-22 157.5 12.8 138 358-522 1-156 (158)
309 TIGR00231 small_GTP small GTP- 99.7 7.7E-17 1.7E-21 149.9 17.8 153 154-321 2-160 (161)
310 cd01862 Rab7 Rab7 subfamily. 99.7 3E-17 6.5E-22 156.5 15.1 148 358-527 1-169 (172)
311 TIGR00157 ribosome small subun 99.7 6.3E-18 1.4E-22 170.9 10.8 152 225-419 25-185 (245)
312 cd00157 Rho Rho (Ras homology) 99.7 1E-17 2.3E-22 159.5 11.8 153 358-522 1-170 (171)
313 cd01873 RhoBTB RhoBTB subfamil 99.7 1.2E-17 2.6E-22 163.3 12.4 154 358-523 3-194 (195)
314 TIGR03597 GTPase_YqeH ribosome 99.7 4.1E-17 8.9E-22 174.1 17.5 206 225-472 52-281 (360)
315 TIGR00487 IF-2 translation ini 99.7 4.2E-17 9.1E-22 183.1 18.4 153 152-322 86-247 (587)
316 cd04148 RGK RGK subfamily. Th 99.7 2.2E-17 4.7E-22 164.9 14.3 144 358-525 1-163 (221)
317 TIGR03598 GTPase_YsxC ribosome 99.7 3.3E-17 7.1E-22 158.1 15.0 149 355-514 16-179 (179)
318 cd00154 Rab Rab family. Rab G 99.7 1.6E-17 3.4E-22 155.2 12.3 142 358-521 1-158 (159)
319 cd04123 Rab21 Rab21 subfamily. 99.7 3E-17 6.4E-22 154.6 14.2 144 358-523 1-160 (162)
320 cd04147 Ras_dva Ras-dva subfam 99.7 3.1E-17 6.7E-22 161.0 14.7 146 359-525 1-163 (198)
321 PRK12289 GTPase RsgA; Reviewed 99.7 1.8E-17 3.8E-22 174.9 13.7 148 230-419 83-238 (352)
322 cd04178 Nucleostemin_like Nucl 99.7 1.7E-17 3.7E-22 158.5 12.0 158 238-415 1-172 (172)
323 cd04137 RheB Rheb (Ras Homolog 99.7 3E-17 6.5E-22 158.2 13.9 148 358-528 2-166 (180)
324 cd04155 Arl3 Arl3 subfamily. 99.7 1.1E-16 2.5E-21 153.0 17.7 149 153-322 14-172 (173)
325 cd00879 Sar1 Sar1 subfamily. 99.7 3.7E-17 8.1E-22 159.0 14.6 149 357-523 19-189 (190)
326 cd01893 Miro1 Miro1 subfamily. 99.7 3E-17 6.4E-22 156.3 13.6 147 358-524 1-163 (166)
327 cd04166 CysN_ATPS CysN_ATPS su 99.7 1.2E-17 2.6E-22 165.2 11.0 144 359-516 1-185 (208)
328 cd04129 Rho2 Rho2 subfamily. 99.7 4.7E-17 1E-21 158.2 15.1 156 155-324 3-172 (187)
329 smart00178 SAR Sar1p-like memb 99.7 6.2E-17 1.4E-21 156.9 15.8 148 357-522 17-182 (184)
330 cd04155 Arl3 Arl3 subfamily. 99.7 5.7E-17 1.2E-21 155.0 15.3 144 357-522 14-172 (173)
331 cd01884 EF_Tu EF-Tu subfamily. 99.7 7E-17 1.5E-21 157.7 16.1 147 154-314 3-172 (195)
332 KOG1490 GTP-binding protein CR 99.7 2.6E-18 5.7E-23 179.8 6.4 188 133-325 149-341 (620)
333 cd04159 Arl10_like Arl10-like 99.7 5.7E-17 1.2E-21 151.5 14.9 148 156-322 2-158 (159)
334 cd01891 TypA_BipA TypA (tyrosi 99.7 7.8E-17 1.7E-21 157.6 16.5 145 359-516 4-173 (194)
335 KOG0093 GTPase Rab3, small G p 99.7 1.6E-17 3.5E-22 147.0 10.2 148 357-526 21-184 (193)
336 cd01896 DRG The developmentall 99.7 7.3E-17 1.6E-21 162.2 16.4 156 155-324 2-225 (233)
337 TIGR02528 EutP ethanolamine ut 99.7 2.9E-17 6.2E-22 152.0 12.3 133 359-521 2-141 (142)
338 PRK05306 infB translation init 99.7 6.3E-17 1.4E-21 185.7 17.8 153 152-322 289-449 (787)
339 cd00876 Ras Ras family. The R 99.7 3.6E-17 7.9E-22 153.6 13.0 142 359-523 1-159 (160)
340 KOG0088 GTPase Rab21, small G 99.7 3.9E-18 8.5E-23 152.6 5.9 160 152-327 12-177 (218)
341 PRK00454 engB GTP-binding prot 99.7 1.3E-16 2.8E-21 155.8 16.9 156 356-524 23-193 (196)
342 cd04161 Arl2l1_Arl13_like Arl2 99.7 5.7E-17 1.2E-21 154.6 13.5 144 359-522 1-166 (167)
343 cd01870 RhoA_like RhoA-like su 99.7 5.6E-17 1.2E-21 155.4 13.1 154 358-523 2-173 (175)
344 TIGR00475 selB selenocysteine- 99.7 9.4E-17 2E-21 181.1 17.0 157 155-325 2-166 (581)
345 CHL00189 infB translation init 99.7 1E-16 2.3E-21 182.2 17.4 154 152-323 243-408 (742)
346 cd00880 Era_like Era (E. coli 99.7 2E-16 4.4E-21 147.2 16.2 159 158-323 1-162 (163)
347 PF00071 Ras: Ras family; Int 99.7 9.3E-17 2E-21 151.7 14.0 145 359-525 1-161 (162)
348 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 8.8E-17 1.9E-21 152.9 13.8 143 359-521 1-162 (164)
349 COG0370 FeoB Fe2+ transport sy 99.7 1.3E-16 2.7E-21 175.3 16.8 159 154-325 4-164 (653)
350 TIGR00231 small_GTP small GTP- 99.7 2.2E-16 4.8E-21 146.8 15.9 140 358-520 2-159 (161)
351 KOG0097 GTPase Rab14, small G 99.7 1.5E-16 3.3E-21 139.6 13.4 160 151-326 9-174 (215)
352 PRK15467 ethanolamine utilizat 99.7 8.1E-17 1.8E-21 152.2 12.7 138 359-526 3-148 (158)
353 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 2.4E-16 5.1E-21 154.5 16.2 169 155-326 2-185 (196)
354 cd01876 YihA_EngB The YihA (En 99.7 4.4E-16 9.4E-21 147.1 17.5 162 155-323 1-169 (170)
355 TIGR00437 feoB ferrous iron tr 99.7 1.7E-16 3.7E-21 179.1 17.3 151 160-323 1-153 (591)
356 smart00176 RAN Ran (Ras-relate 99.7 1.5E-16 3.2E-21 156.1 14.5 140 363-526 1-155 (200)
357 COG0536 Obg Predicted GTPase [ 99.7 1.4E-16 2.9E-21 161.2 14.2 174 148-327 154-335 (369)
358 cd04159 Arl10_like Arl10-like 99.7 2.5E-16 5.4E-21 147.2 15.2 142 360-522 2-158 (159)
359 TIGR00491 aIF-2 translation in 99.7 2.4E-16 5.2E-21 176.6 17.7 160 153-327 4-218 (590)
360 PRK12317 elongation factor 1-a 99.7 1.2E-16 2.6E-21 175.1 14.9 150 356-517 5-197 (425)
361 KOG0083 GTPase Rab26/Rab37, sm 99.7 3.5E-18 7.6E-23 148.6 2.0 149 362-531 2-166 (192)
362 cd01896 DRG The developmentall 99.7 1.8E-16 3.9E-21 159.3 14.5 144 359-524 2-225 (233)
363 TIGR01393 lepA GTP-binding pro 99.7 2.5E-16 5.5E-21 177.7 17.1 158 153-326 3-181 (595)
364 PRK12317 elongation factor 1-a 99.7 1.4E-16 3.1E-21 174.5 14.6 152 154-318 7-198 (425)
365 cd00880 Era_like Era (E. coli 99.7 4.4E-16 9.6E-21 144.9 15.0 151 362-523 1-162 (163)
366 PRK13796 GTPase YqeH; Provisio 99.7 4.3E-16 9.3E-21 166.5 16.2 153 228-418 60-223 (365)
367 TIGR00475 selB selenocysteine- 99.7 3.6E-16 7.9E-21 176.3 16.2 154 358-526 1-167 (581)
368 cd01883 EF1_alpha Eukaryotic e 99.7 2.8E-16 6.1E-21 156.7 13.6 146 359-514 1-194 (219)
369 PRK12288 GTPase RsgA; Reviewed 99.7 3.6E-16 7.9E-21 165.0 15.0 146 233-419 117-271 (347)
370 PRK10512 selenocysteinyl-tRNA- 99.7 7E-16 1.5E-20 174.5 17.5 156 155-324 2-165 (614)
371 TIGR00487 IF-2 translation ini 99.7 6.4E-16 1.4E-20 173.6 16.8 151 356-522 86-247 (587)
372 PRK09866 hypothetical protein; 99.7 6.1E-16 1.3E-20 168.9 16.0 115 203-322 230-350 (741)
373 cd01888 eIF2_gamma eIF2-gamma 99.7 6.2E-16 1.4E-20 152.4 14.6 159 155-326 2-200 (203)
374 PRK05306 infB translation init 99.7 7E-16 1.5E-20 177.1 16.7 150 355-522 288-449 (787)
375 COG2262 HflX GTPases [General 99.7 4.9E-16 1.1E-20 161.3 13.6 151 357-526 192-357 (411)
376 COG1084 Predicted GTPase [Gene 99.7 6.6E-16 1.4E-20 155.7 14.0 152 357-523 168-334 (346)
377 CHL00071 tufA elongation facto 99.7 8.8E-16 1.9E-20 167.0 16.1 145 356-513 11-181 (409)
378 KOG0081 GTPase Rab27, small G 99.7 7.3E-17 1.6E-21 144.6 6.1 163 153-331 9-187 (219)
379 KOG0395 Ras-related GTPase [Ge 99.7 4.3E-16 9.2E-21 151.8 11.9 147 357-526 3-166 (196)
380 KOG0088 GTPase Rab21, small G 99.7 4.6E-17 1E-21 145.8 4.6 147 356-524 12-174 (218)
381 COG1163 DRG Predicted GTPase [ 99.7 3.5E-16 7.7E-21 156.9 11.2 144 358-524 64-288 (365)
382 KOG0083 GTPase Rab26/Rab37, sm 99.7 7.2E-17 1.6E-21 140.5 5.4 156 158-326 2-161 (192)
383 KOG1707 Predicted Ras related/ 99.7 6.4E-15 1.4E-19 157.7 21.3 153 154-321 10-171 (625)
384 COG1161 Predicted GTPases [Gen 99.7 1E-15 2.2E-20 160.6 15.2 169 225-419 23-191 (322)
385 cd01888 eIF2_gamma eIF2-gamma 99.7 6.8E-16 1.5E-20 152.1 12.9 150 358-523 1-197 (203)
386 cd04129 Rho2 Rho2 subfamily. 99.7 5.5E-16 1.2E-20 150.7 11.9 154 358-524 2-172 (187)
387 PF10662 PduV-EutP: Ethanolami 99.7 1.6E-15 3.4E-20 138.2 13.9 141 154-321 2-142 (143)
388 PTZ00132 GTP-binding nuclear p 99.7 2.8E-15 6.1E-20 149.0 16.9 158 152-325 8-168 (215)
389 PRK05433 GTP-binding protein L 99.7 2E-15 4.3E-20 170.6 17.7 160 153-326 7-185 (600)
390 PF01926 MMR_HSR1: 50S ribosom 99.7 1.1E-15 2.3E-20 136.7 12.3 107 359-466 1-116 (116)
391 KOG0091 GTPase Rab39, small G 99.7 2.7E-16 5.9E-21 141.8 8.4 149 357-527 8-175 (213)
392 PF00025 Arf: ADP-ribosylation 99.7 2.3E-15 5E-20 144.8 15.4 147 356-523 13-174 (175)
393 PRK12736 elongation factor Tu; 99.6 1.4E-15 3E-20 164.7 15.3 144 355-511 10-179 (394)
394 KOG0097 GTPase Rab14, small G 99.6 6.2E-16 1.3E-20 135.9 10.1 147 357-526 11-174 (215)
395 cd01899 Ygr210 Ygr210 subfamil 99.6 2.6E-15 5.6E-20 156.7 16.4 161 156-326 1-270 (318)
396 cd00882 Ras_like_GTPase Ras-li 99.6 2.2E-15 4.7E-20 138.5 13.8 151 158-321 1-156 (157)
397 cd04168 TetM_like Tet(M)-like 99.6 3.2E-15 7E-20 150.5 16.1 115 155-281 1-130 (237)
398 PRK10218 GTP-binding protein; 99.6 4E-15 8.6E-20 167.4 18.2 160 153-326 5-196 (607)
399 TIGR01393 lepA GTP-binding pro 99.6 1.9E-15 4.2E-20 170.6 15.8 147 358-524 4-179 (595)
400 PRK00098 GTPase RsgA; Reviewed 99.6 1.4E-15 3.1E-20 158.3 13.3 145 233-418 77-229 (298)
401 KOG1489 Predicted GTP-binding 99.6 9.8E-16 2.1E-20 153.0 11.0 146 359-522 198-364 (366)
402 PRK04004 translation initiatio 99.6 4.9E-15 1.1E-19 166.8 17.8 159 153-326 6-219 (586)
403 PF00025 Arf: ADP-ribosylation 99.6 1.3E-15 2.7E-20 146.6 11.2 153 153-323 14-174 (175)
404 COG0532 InfB Translation initi 99.6 3.7E-15 8.1E-20 159.6 15.8 154 153-324 5-169 (509)
405 CHL00071 tufA elongation facto 99.6 2.9E-15 6.3E-20 162.9 15.4 147 153-313 12-181 (409)
406 cd04165 GTPBP1_like GTPBP1-lik 99.6 5.7E-15 1.2E-19 147.3 16.2 156 155-322 1-220 (224)
407 KOG1145 Mitochondrial translat 99.6 4.8E-15 1E-19 157.0 16.1 158 147-322 147-313 (683)
408 TIGR01394 TypA_BipA GTP-bindin 99.6 5.3E-15 1.1E-19 166.6 17.6 159 154-326 2-192 (594)
409 cd04168 TetM_like Tet(M)-like 99.6 5.9E-15 1.3E-19 148.6 16.1 154 359-523 1-233 (237)
410 cd01883 EF1_alpha Eukaryotic e 99.6 2.9E-15 6.3E-20 149.4 13.6 148 156-314 2-194 (219)
411 CHL00189 infB translation init 99.6 2.7E-15 5.8E-20 170.8 15.0 154 355-524 242-409 (742)
412 PRK12735 elongation factor Tu; 99.6 3.7E-15 8E-20 161.4 15.3 143 356-512 11-180 (396)
413 COG0218 Predicted GTPase [Gene 99.6 1.3E-14 2.7E-19 138.1 16.7 156 357-524 24-196 (200)
414 cd01886 EF-G Elongation factor 99.6 3.9E-15 8.4E-20 152.6 14.2 143 156-310 2-160 (270)
415 PRK05506 bifunctional sulfate 99.6 4E-15 8.6E-20 170.6 15.7 152 153-315 24-211 (632)
416 TIGR00491 aIF-2 translation in 99.6 7.1E-15 1.5E-19 164.9 17.0 157 357-525 4-216 (590)
417 PRK12736 elongation factor Tu; 99.6 5.7E-15 1.2E-19 159.9 15.8 158 153-324 12-200 (394)
418 cd04102 RabL3 RabL3 (Rab-like3 99.6 1.3E-14 2.9E-19 142.3 16.5 144 155-312 2-177 (202)
419 PRK10512 selenocysteinyl-tRNA- 99.6 5.7E-15 1.2E-19 167.2 15.7 149 359-523 2-164 (614)
420 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 6.5E-15 1.4E-19 144.3 14.1 164 358-526 1-185 (196)
421 COG3596 Predicted GTPase [Gene 99.6 5.1E-15 1.1E-19 146.0 13.1 168 154-326 40-223 (296)
422 cd01854 YjeQ_engC YjeQ/EngC. 99.6 5E-15 1.1E-19 153.4 13.8 143 233-418 75-226 (287)
423 TIGR02034 CysN sulfate adenyly 99.6 6.4E-15 1.4E-19 160.0 15.1 152 155-317 2-189 (406)
424 PLN03127 Elongation factor Tu; 99.6 1.7E-14 3.6E-19 157.8 18.0 143 356-512 60-232 (447)
425 TIGR00483 EF-1_alpha translati 99.6 6.9E-15 1.5E-19 161.2 15.0 151 356-518 6-200 (426)
426 KOG0395 Ras-related GTPase [Ge 99.6 8.2E-15 1.8E-19 142.8 13.6 158 153-325 3-165 (196)
427 TIGR00485 EF-Tu translation el 99.6 1.1E-14 2.4E-19 157.8 15.9 143 356-511 11-179 (394)
428 PRK09602 translation-associate 99.6 1.6E-14 3.5E-19 155.2 16.6 162 154-326 2-272 (396)
429 TIGR01394 TypA_BipA GTP-bindin 99.6 9.5E-15 2.1E-19 164.6 15.4 152 359-523 3-189 (594)
430 PRK05124 cysN sulfate adenylyl 99.6 1E-14 2.2E-19 161.0 15.2 155 153-318 27-218 (474)
431 COG0536 Obg Predicted GTPase [ 99.6 1E-14 2.2E-19 147.7 13.9 155 359-528 161-336 (369)
432 PRK00049 elongation factor Tu; 99.6 1.3E-14 2.7E-19 157.2 15.7 144 356-512 11-180 (396)
433 KOG0081 GTPase Rab27, small G 99.6 6.1E-16 1.3E-20 138.7 4.4 147 357-525 9-181 (219)
434 TIGR00483 EF-1_alpha translati 99.6 9.5E-15 2.1E-19 160.1 14.8 153 153-318 7-200 (426)
435 cd01876 YihA_EngB The YihA (En 99.6 2.6E-14 5.7E-19 134.9 16.0 154 359-523 1-169 (170)
436 KOG0073 GTP-binding ADP-ribosy 99.6 2.8E-14 6.2E-19 129.3 15.0 157 153-326 16-179 (185)
437 KOG0073 GTP-binding ADP-ribosy 99.6 3.7E-14 8E-19 128.6 15.8 150 356-526 15-179 (185)
438 PTZ00132 GTP-binding nuclear p 99.6 3.4E-14 7.5E-19 141.2 17.1 146 356-526 8-169 (215)
439 PRK12735 elongation factor Tu; 99.6 1.6E-14 3.5E-19 156.4 15.9 158 153-324 12-202 (396)
440 PRK10218 GTP-binding protein; 99.6 2.1E-14 4.6E-19 161.6 17.3 142 358-512 6-172 (607)
441 cd01886 EF-G Elongation factor 99.6 1.1E-14 2.4E-19 149.3 13.4 104 359-472 1-131 (270)
442 PLN03126 Elongation factor Tu; 99.6 2.1E-14 4.5E-19 157.9 16.4 145 356-513 80-250 (478)
443 TIGR00485 EF-Tu translation el 99.6 2.6E-14 5.6E-19 154.9 16.0 150 153-316 12-185 (394)
444 cd04104 p47_IIGP_like p47 (47- 99.6 2.3E-14 4.9E-19 140.6 14.1 164 154-327 2-186 (197)
445 TIGR03680 eif2g_arch translati 99.6 1.5E-14 3.2E-19 157.2 14.0 159 154-325 5-196 (406)
446 PRK00049 elongation factor Tu; 99.6 3.1E-14 6.8E-19 154.1 16.3 157 154-324 13-202 (396)
447 cd04167 Snu114p Snu114p subfam 99.6 2.3E-14 5.1E-19 142.2 13.9 114 155-280 2-136 (213)
448 PRK05124 cysN sulfate adenylyl 99.6 1.5E-14 3.3E-19 159.5 13.8 150 355-517 25-217 (474)
449 cd04165 GTPBP1_like GTPBP1-lik 99.6 2.7E-14 5.9E-19 142.5 14.2 153 359-521 1-219 (224)
450 PTZ00141 elongation factor 1- 99.6 2.5E-14 5.5E-19 156.6 15.1 150 356-515 6-203 (446)
451 TIGR02034 CysN sulfate adenyly 99.6 1.8E-14 3.9E-19 156.5 13.8 145 358-516 1-188 (406)
452 PLN03127 Elongation factor Tu; 99.6 3E-14 6.5E-19 155.8 15.5 158 154-325 62-252 (447)
453 PRK05433 GTP-binding protein L 99.6 3.1E-14 6.7E-19 161.0 15.8 147 358-524 8-183 (600)
454 cd01899 Ygr210 Ygr210 subfamil 99.6 3.5E-14 7.6E-19 148.2 14.5 86 360-449 1-110 (318)
455 KOG4252 GTP-binding protein [S 99.6 2.1E-15 4.6E-20 137.9 4.4 167 153-333 20-189 (246)
456 COG1100 GTPase SAR1 and relate 99.6 1.2E-13 2.7E-18 137.3 17.5 160 154-326 6-186 (219)
457 cd04102 RabL3 RabL3 (Rab-like3 99.6 8.4E-14 1.8E-18 136.6 15.5 158 358-546 1-198 (202)
458 PRK12739 elongation factor G; 99.6 4.7E-14 1E-18 163.1 16.0 117 152-282 7-140 (691)
459 TIGR03680 eif2g_arch translati 99.5 2.5E-14 5.4E-19 155.5 12.8 152 356-523 3-194 (406)
460 KOG1424 Predicted GTP-binding 99.5 2.8E-14 6E-19 150.9 12.6 185 225-418 163-372 (562)
461 cd01853 Toc34_like Toc34-like 99.5 1.3E-13 2.7E-18 139.5 17.0 131 151-283 29-165 (249)
462 PLN00023 GTP-binding protein; 99.5 8.6E-14 1.9E-18 143.4 15.5 136 151-299 19-189 (334)
463 cd04170 EF-G_bact Elongation f 99.5 3.9E-14 8.4E-19 145.7 13.0 150 155-320 1-168 (268)
464 KOG0462 Elongation factor-type 99.5 3.6E-14 7.7E-19 150.6 12.8 147 358-524 61-234 (650)
465 PRK05506 bifunctional sulfate 99.5 3.7E-14 8E-19 162.6 14.1 147 356-516 23-212 (632)
466 PRK04000 translation initiatio 99.5 5.9E-14 1.3E-18 152.5 14.9 160 153-325 9-201 (411)
467 cd00882 Ras_like_GTPase Ras-li 99.5 3.8E-14 8.2E-19 130.1 11.2 139 362-521 1-156 (157)
468 cd04169 RF3 RF3 subfamily. Pe 99.5 1.4E-13 2.9E-18 141.1 16.2 104 359-472 4-138 (267)
469 cd04167 Snu114p Snu114p subfam 99.5 8.4E-14 1.8E-18 138.3 14.2 146 359-514 2-192 (213)
470 KOG0462 Elongation factor-type 99.5 4.9E-14 1.1E-18 149.6 12.9 165 148-326 55-236 (650)
471 PRK00007 elongation factor G; 99.5 1E-13 2.2E-18 160.3 16.7 116 152-281 9-141 (693)
472 KOG0075 GTP-binding ADP-ribosy 99.5 4.7E-14 1E-18 125.3 10.6 151 154-324 21-181 (186)
473 PRK04004 translation initiatio 99.5 1.4E-13 3.1E-18 155.0 17.4 156 356-523 5-216 (586)
474 cd01885 EF2 EF2 (for archaea a 99.5 1.2E-13 2.7E-18 137.2 14.7 114 155-280 2-138 (222)
475 TIGR00484 EF-G translation elo 99.5 1.1E-13 2.4E-18 160.1 16.6 105 358-472 11-142 (689)
476 PRK09602 translation-associate 99.5 1.1E-13 2.4E-18 148.7 15.4 88 358-449 2-113 (396)
477 cd01885 EF2 EF2 (for archaea a 99.5 1.1E-13 2.5E-18 137.5 14.1 102 359-470 2-138 (222)
478 PLN03126 Elongation factor Tu; 99.5 1.5E-13 3.1E-18 151.2 16.3 147 153-313 81-250 (478)
479 PRK12739 elongation factor G; 99.5 8.7E-14 1.9E-18 160.9 14.9 106 357-472 8-140 (691)
480 TIGR00484 EF-G translation elo 99.5 1.2E-13 2.5E-18 160.0 15.3 143 152-310 9-171 (689)
481 PRK00007 elongation factor G; 99.5 1.6E-13 3.4E-18 158.7 16.0 105 358-472 11-142 (693)
482 cd04169 RF3 RF3 subfamily. Pe 99.5 1.9E-13 4.1E-18 140.0 14.9 117 154-282 3-138 (267)
483 PRK04000 translation initiatio 99.5 8.9E-14 1.9E-18 151.1 13.1 153 356-524 8-200 (411)
484 KOG0075 GTP-binding ADP-ribosy 99.5 9E-14 1.9E-18 123.5 10.4 147 358-525 21-182 (186)
485 PTZ00258 GTP-binding protein; 99.5 2.9E-13 6.3E-18 143.9 16.3 89 153-247 21-126 (390)
486 cd04170 EF-G_bact Elongation f 99.5 2.4E-13 5.1E-18 139.9 14.7 104 359-472 1-131 (268)
487 KOG1490 GTP-binding protein CR 99.5 1.1E-13 2.4E-18 145.4 12.1 174 358-542 169-361 (620)
488 PLN00043 elongation factor 1-a 99.5 2.2E-13 4.7E-18 149.2 14.7 150 356-515 6-203 (447)
489 PRK00741 prfC peptide chain re 99.5 3.8E-13 8.2E-18 149.8 16.5 117 153-281 10-145 (526)
490 COG2229 Predicted GTPase [Gene 99.5 9.6E-13 2.1E-17 122.5 16.3 157 153-323 10-176 (187)
491 PF08477 Miro: Miro-like prote 99.5 5.2E-14 1.1E-18 126.0 7.6 112 155-278 1-119 (119)
492 TIGR00991 3a0901s02IAP34 GTP-b 99.5 4.3E-13 9.4E-18 137.4 15.1 127 152-283 37-169 (313)
493 KOG2484 GTPase [General functi 99.5 1.8E-13 4E-18 140.8 12.1 174 225-418 135-310 (435)
494 cd04104 p47_IIGP_like p47 (47- 99.5 5.5E-13 1.2E-17 130.8 14.8 163 357-528 1-187 (197)
495 PF10662 PduV-EutP: Ethanolami 99.5 4.3E-13 9.3E-18 122.3 12.7 133 359-521 3-142 (143)
496 COG0532 InfB Translation initi 99.5 4E-13 8.7E-18 144.1 14.5 154 357-527 5-172 (509)
497 PTZ00258 GTP-binding protein; 99.5 3.7E-13 8E-18 143.2 14.1 90 356-449 20-126 (390)
498 PRK13351 elongation factor G; 99.5 4.4E-13 9.6E-18 155.4 16.0 119 152-282 7-140 (687)
499 PRK00741 prfC peptide chain re 99.5 7E-13 1.5E-17 147.7 16.8 106 357-472 10-146 (526)
500 COG1162 Predicted GTPases [Gen 99.5 6.6E-13 1.4E-17 134.5 15.0 148 233-420 76-231 (301)
No 1
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=3.9e-88 Score=704.64 Aligned_cols=428 Identities=38% Similarity=0.573 Sum_probs=386.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 233 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 233 (640)
|.|+|||+||||||||||+|++++.++|+++|| +|||+.++...|.+.+|.++||+|++...+ +.+..++.+++..+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pG--vTRDr~y~~~~~~~~~f~lIDTgGl~~~~~-~~l~~~i~~Qa~~A 80 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPG--VTRDRIYGDAEWLGREFILIDTGGLDDGDE-DELQELIREQALIA 80 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCC--CccCCccceeEEcCceEEEEECCCCCcCCc-hHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999 999999999999999999999999985432 34666788999999
Q ss_pred HhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCCh
Q 006555 234 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 313 (640)
Q Consensus 234 ~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~gi 313 (640)
+.+||++|||+|+..++++.|.++.++|++. ++|+|+|+||+|... .+....+++.+|++++++|||.||.|+
T Consensus 81 i~eADvilfvVD~~~Git~~D~~ia~~Lr~~--~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg~Gi 153 (444)
T COG1160 81 IEEADVILFVVDGREGITPADEEIAKILRRS--KKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHGRGI 153 (444)
T ss_pred HHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc--CCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhccCH
Confidence 9999999999999999999999999999965 799999999999874 356788999999999999999999999
Q ss_pred hHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEeCCCCchHHHHHHHhcCCceeecCccccee
Q 006555 314 TELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTR 393 (640)
Q Consensus 314 ~eL~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~ 393 (640)
.+|++.+.+.++ .. +..+......++||+++|+||||||||+|+|+|+++.++++.+|||+
T Consensus 154 ~dLld~v~~~l~-~~------------------e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTR 214 (444)
T COG1160 154 GDLLDAVLELLP-PD------------------EEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTR 214 (444)
T ss_pred HHHHHHHHhhcC-Cc------------------ccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccc
Confidence 999999998763 10 00001111357999999999999999999999999999999999999
Q ss_pred eeEEEEEEECCeEEEEEEeCCCCcc-cccCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEEE
Q 006555 394 DSVRVHFEYQGRTVYLVDTAGWLQR-EKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVV 462 (640)
Q Consensus 394 d~~~~~~~~~~~~~~liDTpG~~~~-~~~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~Il 462 (640)
|.+...+++++++|.++||||+++. ...++.|.+++.++.+++..||+|++|+|++++ .+.+.++++||
T Consensus 215 D~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vI 294 (444)
T COG1160 215 DSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVI 294 (444)
T ss_pred cceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEE
Confidence 9999999999999999999999988 556778999999999999999999999999986 45678999999
Q ss_pred EEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEeccccCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 006555 463 IVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRK 542 (640)
Q Consensus 463 v~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g~gv~~l~~~i~~~~~~~~~~i~t~~l~~~l~~ 542 (640)
|+||||+.+.++ .. .+.+..++...+.+..++|++++||++|.|+.++|+.+.+.++.+..+++|+.||+||+.
T Consensus 295 vvNKWDl~~~~~--~~----~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~ 368 (444)
T COG1160 295 VVNKWDLVEEDE--AT----MEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRISTSLLNRVLED 368 (444)
T ss_pred EEEccccCCchh--hH----HHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence 999999987522 11 233445666678889999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCC-CCCCCcEeeeeecCCCCCEEEEEecCCCCCCHHHHHHHHHHhHhhCCCCceeEEEEEeecCCCCC
Q 006555 543 VMGRHSWKD-QSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSVPRKCG 616 (640)
Q Consensus 543 ~~~~~~~~~-~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~~~~~~~~g~pi~~~~~~~~~~~~ 616 (640)
++..|||+. .|+++|++|++|++++||+|++|||+++.++++|+|||+|+||+.|+|.|+||+|.||.+.+++.
T Consensus 369 a~~~~pP~~~~G~r~ki~Ya~q~~~~PP~fvlf~N~~~~~~~sY~RyL~n~~R~~f~~~g~Pi~l~~k~~~~~~~ 443 (444)
T COG1160 369 AVAKHPPPVRYGRRLKIKYATQVSTNPPTFVLFGNRPKALHFSYKRYLENRLRKAFGFEGTPIRLEFKKKKNPYA 443 (444)
T ss_pred HHHhCCCCccCCceEEEEEEecCCCCCCEEEEEecchhhCchHHHHHHHHHHHHHcCCCCCcEEEEEecCCCccC
Confidence 999998775 49999999999999999999999999999999999999999999999999999999999988765
No 2
>PRK03003 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=3.4e-71 Score=610.97 Aligned_cols=421 Identities=35% Similarity=0.522 Sum_probs=352.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 152 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 152 ~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
..++|+|||+||||||||+|+|++.+.+++.+.+| +|++.......+.+..+.+|||||+.... ..+...+..++.
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~g--vT~d~~~~~~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~ 112 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPG--VTRDRVSYDAEWNGRRFTVVDTGGWEPDA--KGLQASVAEQAE 112 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCC--CCEeeEEEEEEECCcEEEEEeCCCcCCcc--hhHHHHHHHHHH
Confidence 45899999999999999999999988888888888 99999999999999999999999987322 123345566777
Q ss_pred HHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCC
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGL 311 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~ 311 (640)
.++..||++|+|+|++++.+..+.++.++++.. ++|+++|+||+|+.... .....++.+++..++++||++|.
T Consensus 113 ~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~--~~piilV~NK~Dl~~~~-----~~~~~~~~~g~~~~~~iSA~~g~ 185 (472)
T PRK03003 113 VAMRTADAVLFVVDATVGATATDEAVARVLRRS--GKPVILAANKVDDERGE-----ADAAALWSLGLGEPHPVSALHGR 185 (472)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEECccCCccc-----hhhHHHHhcCCCCeEEEEcCCCC
Confidence 889999999999999999988888888888875 78999999999986532 12234567788788999999999
Q ss_pred ChhHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEeCCCCchHHHHHHHhcCCceeecCcccc
Q 006555 312 GMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGL 391 (640)
Q Consensus 312 gi~eL~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gt 391 (640)
|+++|++.|.+.+++.. + . .......++|+++|+||||||||+|+|++.++..+++.+|+
T Consensus 186 gi~eL~~~i~~~l~~~~----------~-------~---~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gt 245 (472)
T PRK03003 186 GVGDLLDAVLAALPEVP----------R-------V---GSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGT 245 (472)
T ss_pred CcHHHHHHHHhhccccc----------c-------c---ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCc
Confidence 99999999987664310 0 0 00011358999999999999999999999888889999999
Q ss_pred eeeeEEEEEEECCeEEEEEEeCCCCccc-ccCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcE
Q 006555 392 TRDSVRVHFEYQGRTVYLVDTAGWLQRE-KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGL 460 (640)
Q Consensus 392 T~d~~~~~~~~~~~~~~liDTpG~~~~~-~~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~ 460 (640)
|+|.....+.+++..+.||||||+++.. ...+.+.+...++..+++.||++++|+|++++ .....++|+
T Consensus 246 T~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~pi 325 (472)
T PRK03003 246 TVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRAL 325 (472)
T ss_pred cCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE
Confidence 9999988899999999999999987652 23345667767777889999999999999875 234578999
Q ss_pred EEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEeccccCCCHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 006555 461 VVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWL 540 (640)
Q Consensus 461 Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g~gv~~l~~~i~~~~~~~~~~i~t~~l~~~l 540 (640)
|+|+||||+.+.... ..+..++...+....++|++++||++|.|++++|+.+.+.++++..+++|+.||+|+
T Consensus 326 IiV~NK~Dl~~~~~~--------~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~ 397 (472)
T PRK03003 326 VLAFNKWDLVDEDRR--------YYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWDTRIPTGRLNAWL 397 (472)
T ss_pred EEEEECcccCChhHH--------HHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 999999999753211 112233344445555689999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCC-CCCCCCcEeeeeecCCCCCEEEEEecCCCCCCHHHHHHHHHHhHhhCCCCceeEEEEEeecCC
Q 006555 541 RKVMGRHSWK-DQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSVPR 613 (640)
Q Consensus 541 ~~~~~~~~~~-~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~~~~~~~~g~pi~~~~~~~~~ 613 (640)
++++..+|+| ..|+++|++|++|+.++||+|++|+| +.++++|+|||+|+||++|+|.|+||+|.||++.|
T Consensus 398 ~~~~~~~~~p~~~g~~~k~~y~~q~~~~pp~f~~~~~--~~~~~~y~~~l~~~~r~~~~~~g~pi~~~~~~~~~ 469 (472)
T PRK03003 398 GELVAATPPPVRGGKQPRILFATQASTRPPTFVLFTT--GFLEAGYRRFLERRLRETFGFEGSPIRISVRVREK 469 (472)
T ss_pred HHHHHcCCCCCCCCeeeeEEEEECCCCCCCEEEEEeC--CCCChHHHHHHHHHHHHHcCCCcceEEEEEEecCc
Confidence 9999999888 67899999999999999999999966 78999999999999999999999999999996643
No 3
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=100.00 E-value=7.9e-70 Score=596.59 Aligned_cols=417 Identities=40% Similarity=0.626 Sum_probs=357.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 234 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 234 (640)
+|+|||+||||||||+|+|++.+.+++++.+| +|++.....+.+++..+.+|||||+.... ..+...+..++..++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g--~t~d~~~~~~~~~~~~~~liDTpG~~~~~--~~~~~~~~~~~~~~~ 76 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPG--VTRDRKYGDAEWGGREFILIDTGGIEEDD--DGLDKQIREQAEIAI 76 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCC--cccCceEEEEEECCeEEEEEECCCCCCcc--hhHHHHHHHHHHHHH
Confidence 48999999999999999999998889999998 99999999999999999999999986322 234456667888899
Q ss_pred hccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCChh
Q 006555 235 AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMT 314 (640)
Q Consensus 235 ~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~gi~ 314 (640)
+++|++++|+|++++.+..+.++.+++++. ++|+++|+||+|+..... ...+++.+|+.+++++||++|.|++
T Consensus 77 ~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~--~~piilVvNK~D~~~~~~-----~~~~~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 77 EEADVILFVVDGREGLTPEDEEIAKWLRKS--GKPVILVANKIDGKKEDA-----VAAEFYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred hhCCEEEEEEeCCCCCCHHHHHHHHHHHHh--CCCEEEEEECccCCcccc-----cHHHHHhcCCCCeEEEeCCcCCChH
Confidence 999999999999999999999999999886 789999999999876432 2345778899899999999999999
Q ss_pred HHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEeCCCCchHHHHHHHhcCCceeecCcccceee
Q 006555 315 ELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRD 394 (640)
Q Consensus 315 eL~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d 394 (640)
++++.+.+.+++.. .........++|+++|++|+|||||+|+|++.++..+++.+|+|++
T Consensus 150 ~ll~~i~~~l~~~~--------------------~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~ 209 (429)
T TIGR03594 150 DLLDAILELLPEEE--------------------EEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRD 209 (429)
T ss_pred HHHHHHHHhcCccc--------------------ccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceEC
Confidence 99999887664310 0001112458999999999999999999999988889999999999
Q ss_pred eEEEEEEECCeEEEEEEeCCCCcccc-cCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEEEE
Q 006555 395 SVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVI 463 (640)
Q Consensus 395 ~~~~~~~~~~~~~~liDTpG~~~~~~-~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~Ilv 463 (640)
.....+.+++..+.+|||||+.+... ....+.+...++..+++.||++|+|+|++++ .....++|+|+|
T Consensus 210 ~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv 289 (429)
T TIGR03594 210 SIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIV 289 (429)
T ss_pred cEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEE
Confidence 99988889999999999999977632 3345677778888899999999999999875 234568999999
Q ss_pred EeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEeccccCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 006555 464 VNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKV 543 (640)
Q Consensus 464 ~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g~gv~~l~~~i~~~~~~~~~~i~t~~l~~~l~~~ 543 (640)
+||||+.+.. +..+ .+..++...+....+++++++||++|.|++++|+.+.+.++++..+++|+.||+||+++
T Consensus 290 ~NK~Dl~~~~---~~~~----~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~ 362 (429)
T TIGR03594 290 VNKWDLVKDE---KTRE----EFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENANRRISTSKLNRVLEEA 362 (429)
T ss_pred EECcccCCCH---HHHH----HHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 9999998321 1122 23344455556666789999999999999999999999999999999999999999999
Q ss_pred HhcCCCC-CCCCCCcEeeeeecCCCCCEEEEEecCCCCCCHHHHHHHHHHhHhhCCCCceeEEEEEe
Q 006555 544 MGRHSWK-DQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQR 609 (640)
Q Consensus 544 ~~~~~~~-~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~~~~~~~~g~pi~~~~~ 609 (640)
+..+++| ..+++.|++|++|+..+||+|++|+|+++.++++|+|||+|+||+.|+|.|+||+|.||
T Consensus 363 ~~~~~~p~~~~~~~k~~y~~q~~~~pp~~~~~~n~~~~~~~~y~~~l~~~~~~~~~~~g~p~~~~~~ 429 (429)
T TIGR03594 363 VAAHPPPLVNGRRLKIKYATQVGTNPPTFVLFGNRPELLPFSYKRYLENQFREAFGFEGTPIRLEFK 429 (429)
T ss_pred HHcCCCCCCCCceeeEEEEECCCCCCCEEEEEEcCcccCCHHHHHHHHHHHHHhcCCCcceEEEEeC
Confidence 9998777 57889999999999999999999999999999999999999999999999999999985
No 4
>PRK00093 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=8e-69 Score=589.33 Aligned_cols=418 Identities=40% Similarity=0.619 Sum_probs=357.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 233 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 233 (640)
++|+|+|++|||||||+|+|++.+.+++.+.++ +|++.....+.+.+..+.+|||||+..... .....+..++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~--~t~d~~~~~~~~~~~~~~liDT~G~~~~~~--~~~~~~~~~~~~~ 77 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPG--VTRDRIYGEAEWLGREFILIDTGGIEPDDD--GFEKQIREQAELA 77 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCC--CcccceEEEEEECCcEEEEEECCCCCCcch--hHHHHHHHHHHHH
Confidence 689999999999999999999998888888888 999999999999999999999999985221 2444566677788
Q ss_pred HhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCCh
Q 006555 234 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 313 (640)
Q Consensus 234 ~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~gi 313 (640)
+..+|++|+|+|++++.+..+.++.+++++. ++|+++|+||+|+... .....+++.+|+..++++||++|.|+
T Consensus 78 ~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~--~~piilv~NK~D~~~~-----~~~~~~~~~lg~~~~~~iSa~~g~gv 150 (435)
T PRK00093 78 IEEADVILFVVDGRAGLTPADEEIAKILRKS--NKPVILVVNKVDGPDE-----EADAYEFYSLGLGEPYPISAEHGRGI 150 (435)
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCcEEEEEECccCccc-----hhhHHHHHhcCCCCCEEEEeeCCCCH
Confidence 9999999999999999999888899999887 8899999999996542 22345567788878999999999999
Q ss_pred hHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEeCCCCchHHHHHHHhcCCceeecCccccee
Q 006555 314 TELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTR 393 (640)
Q Consensus 314 ~eL~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~ 393 (640)
+++++.|....+.. . ........++|+++|++|+|||||+|+|++.++..+++.+|+|+
T Consensus 151 ~~l~~~I~~~~~~~-------------------~--~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~ 209 (435)
T PRK00093 151 GDLLDAILEELPEE-------------------E--EEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTR 209 (435)
T ss_pred HHHHHHHHhhCCcc-------------------c--cccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceE
Confidence 99999987632110 0 00001246899999999999999999999999899999999999
Q ss_pred eeEEEEEEECCeEEEEEEeCCCCccc-ccCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEEE
Q 006555 394 DSVRVHFEYQGRTVYLVDTAGWLQRE-KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVV 462 (640)
Q Consensus 394 d~~~~~~~~~~~~~~liDTpG~~~~~-~~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~Il 462 (640)
+.....+.+++..+.+|||||+.+.. .....+.+...++.++++.+|++|+|+|++++ .....++|+|+
T Consensus 210 ~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~iv 289 (435)
T PRK00093 210 DSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVI 289 (435)
T ss_pred EEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEE
Confidence 99988888999999999999987763 23456777778888899999999999999875 23456899999
Q ss_pred EEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEeccccCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 006555 463 IVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRK 542 (640)
Q Consensus 463 v~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g~gv~~l~~~i~~~~~~~~~~i~t~~l~~~l~~ 542 (640)
|+||||+.+... . +.+..++...+....++|++++||++|.|++++++.+.+.+.++..+++|+.+|+||++
T Consensus 290 v~NK~Dl~~~~~----~----~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~ 361 (435)
T PRK00093 290 VVNKWDLVDEKT----M----EEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENANRRISTSVLNRVLEE 361 (435)
T ss_pred EEECccCCCHHH----H----HHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHcCcCChHHHHHHHHH
Confidence 999999974321 1 22334445555666778999999999999999999999999999999999999999999
Q ss_pred HHhcCCCC-CCCCCCcEeeeeecCCCCCEEEEEecCCCCCCHHHHHHHHHHhHhhCCCCceeEEEEEeec
Q 006555 543 VMGRHSWK-DQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSV 611 (640)
Q Consensus 543 ~~~~~~~~-~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~~~~~~~~g~pi~~~~~~~ 611 (640)
++..+|+| ..++++|++|++|+..+||+|++|+|+++.++++|+|||+|+||++|+|.|+||+|.||.+
T Consensus 362 ~~~~~~~p~~~~~~~k~~~~~q~~~~pp~f~~~~n~~~~~~~~y~~~l~~~~r~~~~~~g~p~~~~~~~~ 431 (435)
T PRK00093 362 AVERHPPPLVKGRRLKIKYATQVGTNPPTFVLFVNDPELLPFSYKRYLENQLREAFDFEGTPIRLEFREK 431 (435)
T ss_pred HHHcCCCCCCCCeeeeEEEEEcCCCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHcCCCcccEEEEEecC
Confidence 99998877 5788999999999999999999999999999999999999999999999999999999964
No 5
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=100.00 E-value=4.1e-67 Score=603.75 Aligned_cols=425 Identities=34% Similarity=0.483 Sum_probs=354.3
Q ss_pred cCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHH
Q 006555 151 NLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMT 230 (640)
Q Consensus 151 ~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 230 (640)
...++|+|+|+||||||||+|+|++.+.+++++.+| +|++.......+++..+.+|||||+.... ..+...+..++
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pG--vT~d~~~~~~~~~~~~~~liDT~G~~~~~--~~~~~~~~~~~ 348 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPG--VTRDRVSYDAEWAGTDFKLVDTGGWEADV--EGIDSAIASQA 348 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCC--eeEEEEEEEEEECCEEEEEEeCCCcCCCC--ccHHHHHHHHH
Confidence 345799999999999999999999998889999998 99999999999999999999999987422 12444566777
Q ss_pred HHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCC
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 310 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g 310 (640)
..++..||++|||+|++++.+..+.++.++|+.. ++|+++|+||+|+.... .....++.+|+..++++||++|
T Consensus 349 ~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~--~~pvIlV~NK~D~~~~~-----~~~~~~~~lg~~~~~~iSA~~g 421 (712)
T PRK09518 349 QIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA--GKPVVLAVNKIDDQASE-----YDAAEFWKLGLGEPYPISAMHG 421 (712)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc--CCCEEEEEECcccccch-----hhHHHHHHcCCCCeEEEECCCC
Confidence 8899999999999999999888888888888875 89999999999986531 2234566778888899999999
Q ss_pred CChhHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEeCCCCchHHHHHHHhcCCceeecCccc
Q 006555 311 LGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAG 390 (640)
Q Consensus 311 ~gi~eL~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~g 390 (640)
.|+++|++.|.+.+++.. . . ..-......++|+++|+||||||||+|+|++.++..+++++|
T Consensus 422 ~GI~eLl~~i~~~l~~~~----------~-------~-~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~g 483 (712)
T PRK09518 422 RGVGDLLDEALDSLKVAE----------K-------T-SGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAG 483 (712)
T ss_pred CCchHHHHHHHHhccccc----------c-------c-ccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCC
Confidence 999999999987764310 0 0 000001124799999999999999999999998888899999
Q ss_pred ceeeeEEEEEEECCeEEEEEEeCCCCccc-ccCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCc
Q 006555 391 LTRDSVRVHFEYQGRTVYLVDTAGWLQRE-KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRG 459 (640)
Q Consensus 391 tT~d~~~~~~~~~~~~~~liDTpG~~~~~-~~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p 459 (640)
||+|.....+.+++..+.+|||||+.+.. ...+.+.+...++..+++.+|++++|+|++++ .....++|
T Consensus 484 tT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~p 563 (712)
T PRK09518 484 TTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRA 563 (712)
T ss_pred CCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 99999988889999999999999987652 22345666667778889999999999999875 23356899
Q ss_pred EEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEeccccCCCHHHHHHHHHHHHHHHhcCCChHHHHHH
Q 006555 460 LVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRW 539 (640)
Q Consensus 460 ~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g~gv~~l~~~i~~~~~~~~~~i~t~~l~~~ 539 (640)
+|+|+||||+.+... .+ .+..++...+....+.+++++||++|.|++++++.+.+.+.++..+++|+.||+|
T Consensus 564 iIiV~NK~DL~~~~~----~~----~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~ 635 (712)
T PRK09518 564 LVLVFNKWDLMDEFR----RQ----RLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQRIPTGKLNAF 635 (712)
T ss_pred EEEEEEchhcCChhH----HH----HHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCChHHHHHH
Confidence 999999999975421 11 1222333334455678899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCC-CCCCCCcEeeeeecCCCCCEEEEEecCCCCCCHHHHHHHHHHhHhhCCCCceeEEEEEeecCCC
Q 006555 540 LRKVMGRHSWK-DQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSVPRK 614 (640)
Q Consensus 540 l~~~~~~~~~~-~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~~~~~~~~g~pi~~~~~~~~~~ 614 (640)
+++++..+|+| ..|+++|++|++|+..+||+|++|+| +.++++|+|||+|+||++|+|.|+||+|.||++.++
T Consensus 636 l~~~~~~~~~p~~~g~~~ki~y~~q~~~~Pp~f~~f~~--~~~~~~y~r~l~~~~r~~~~~~g~pi~~~~~~~~~~ 709 (712)
T PRK09518 636 LGKIQAEHPHPLRGGKQPRILFATQASTRPPRFVIFTT--GFLEHGYRRFLERSLREEFGFEGSPIQISVNIREKK 709 (712)
T ss_pred HHHHHhhCCCCccCCeeeeEEEEECCCCCCCEEEEEcC--CCCChHHHHHHHHHHHHHcCCccceEEEEEEecccc
Confidence 99999998887 67899999999999999999999977 789999999999999999999999999999977543
No 6
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=4.7e-32 Score=282.92 Aligned_cols=393 Identities=34% Similarity=0.388 Sum_probs=236.9
Q ss_pred ccCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHH
Q 006555 150 INLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGM 229 (640)
Q Consensus 150 ~~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 229 (640)
.+..+.+.+.|++|+||++|.|. .....+.+.++ +|+|...+...++...|...||.|+...+........
T Consensus 72 r~L~~s~~v~~~~~~~~~~l~~~---~~r~~~~~e~~--v~~D~~l~l~~~gp~sFtgeD~~el~~hgs~avv~~~---- 142 (531)
T KOG1191|consen 72 RRLLRSVMVPKRRNAGLRALYNP---EVRVYVVDEDG--VTRDRALGLYFLGPQSFTGEDVVELQTHGSSAVVVGV---- 142 (531)
T ss_pred HHhccccccCCCCccccccccCh---hhcccccCCCC--cchhhhhhccccCCceeeeeeeEEEEEecCccchhhH----
Confidence 33456889999999999999999 22233444555 9999999999999999999999999855433222111
Q ss_pred HHHHHh-ccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCC-CcEEeec
Q 006555 230 TANVLA-KTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFG-DPIAISA 307 (640)
Q Consensus 230 ~~~~~~-~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~-~~i~iSA 307 (640)
..++. ..---+-..+..+.......+...+|.+...-..+|.+.|+.-..... .+..-..+.+++. ....+++
T Consensus 143 -l~a~~~sg~~~ir~a~~geft~Raf~ngk~~Ltq~eg~~~lI~a~t~~q~~~Al----~~v~g~~~~l~~~~r~~lIe~ 217 (531)
T KOG1191|consen 143 -LTALGASGIPGIRLAEPGEFTRRAFLNGKLDLTQAEGIIDLIVAETESQRRAAL----DEVAGEALALCFGWRKILIEA 217 (531)
T ss_pred -HHHhhhccCCCccccCchhhhhhhhhccccchhhhcChhhhhhhhhHhhhhhhh----hhhcchhHHhhhhHHHHHHHH
Confidence 11121 000001111111111111122223344432233444444444322111 1111111111111 1112222
Q ss_pred cCCCC----------------------hhHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEeC
Q 006555 308 ETGLG----------------------MTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGR 365 (640)
Q Consensus 308 ~~g~g----------------------i~eL~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~ 365 (640)
..+.+ +.+|++.+...+.. ....+.-+.+++|+|+|+
T Consensus 218 ~a~l~a~idf~e~~~l~~~~t~~~~~~~~~l~d~v~s~l~~---------------------~~~~e~lq~gl~iaIvGr 276 (531)
T KOG1191|consen 218 LAGLEARIDFEEERPLEEIETVEIFIESLSLLDDVLSHLNK---------------------ADEIERLQSGLQIAIVGR 276 (531)
T ss_pred HhccceeechhhcCchhhccchhhhhHHHHHHHHHHHHHHh---------------------hhhHHHhhcCCeEEEEcC
Confidence 22211 11111111111110 001112234689999999
Q ss_pred CCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHHhhccEEEEE
Q 006555 366 PNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALV 445 (640)
Q Consensus 366 ~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~advvllV 445 (640)
||||||||+|+|..+++.++++.+|||||.++..++++|.++.|+||||+++ ......|.+++.++++.+..||++++|
T Consensus 277 PNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe-~~~~~iE~~gI~rA~k~~~~advi~~v 355 (531)
T KOG1191|consen 277 PNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE-ESNDGIEALGIERARKRIERADVILLV 355 (531)
T ss_pred CCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccc-ccCChhHHHhHHHHHHHHhhcCEEEEE
Confidence 9999999999999999999999999999999999999999999999999988 345668899999999999999999999
Q ss_pred ecccHH---------HHHH-------------cCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEE
Q 006555 446 LDAEEV---------RAVE-------------EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVV 503 (640)
Q Consensus 446 vDa~~~---------~~~~-------------~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v 503 (640)
+|+... ..+. ...|++++.||.|+...-.... ......... .-....-.++
T Consensus 356 vda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~--~~~~~~~~~-----~~~~~~~i~~ 428 (531)
T KOG1191|consen 356 VDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMT--KIPVVYPSA-----EGRSVFPIVV 428 (531)
T ss_pred ecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcccccc--CCceecccc-----ccCcccceEE
Confidence 999322 1111 2368899999999976511000 000000000 0000122355
Q ss_pred EeccccCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCC--CCCCCCcEeeeeecCCCCCEEEEEecCCCCC
Q 006555 504 FTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWK--DQSAQPKIKYFTQVKARPPTFVAFLSGKKTL 581 (640)
Q Consensus 504 ~iSAk~g~gv~~l~~~i~~~~~~~~~~i~t~~l~~~l~~~~~~~~~~--~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l 581 (640)
++|+++++|+++|...+ +|.|.+..+..+.++ ..+++.+..+ |....|
T Consensus 429 ~vs~~tkeg~~~L~~al---------------l~~~~~~~~~~~s~~~t~~~~r~~~~~--r~~~~~------------- 478 (531)
T KOG1191|consen 429 EVSCTTKEGCERLSTAL---------------LNIVERLVVSPHSAPPTLSQKRIKELL--RTCAAP------------- 478 (531)
T ss_pred EeeechhhhHHHHHHHH---------------HHHHHHhhcCCCCCchhhcchhHHHHH--Hhhhhh-------------
Confidence 69999999998776555 455555555444443 2333433333 333333
Q ss_pred CHHHHHHHHHHhHhhCCCCceeEEEEEeecCCCCC
Q 006555 582 SDAELRFLTKSLKEDFDLGGIPIRITQRSVPRKCG 616 (640)
Q Consensus 582 ~~~y~r~l~~~~~~~~~~~g~pi~~~~~~~~~~~~ 616 (640)
..|.+|+.++++.+++|.|.|+|+..+...+--+
T Consensus 479 -~l~~~~~~k~~~~D~~la~~~lR~a~~~i~r~tg 512 (531)
T KOG1191|consen 479 -ELERRFLAKQLKEDIDLAGEPLRLAQRSIARITG 512 (531)
T ss_pred -hHHHHHHhhhcccchhhccchHHHHHhhhcccCC
Confidence 7899999999999999999999999887765544
No 7
>COG2262 HflX GTPases [General function prediction only]
Probab=99.95 E-value=1.3e-27 Score=246.72 Aligned_cols=258 Identities=21% Similarity=0.190 Sum_probs=205.7
Q ss_pred chhhhHhhcCCChhhHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccccccC------CCCCccccCCCC
Q 006555 54 GAFFFSRFLGSPFYDFMCFLLLFVNVSIMYWFSGSLYQVGSSLKCNLLPEVPRGFCGVVQNE------ALEDTHVEPEPD 127 (640)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~ 127 (640)
=.+-+.+.++-=+.+..-++|=+|.-.+-.--+ ..|+..++.+|.+||+.+.|.++++.. |+|++.+|.+++
T Consensus 83 Q~~NLe~~l~~kVIDRt~LILdIFa~RA~S~Eg--kLQVeLAqL~Y~lpRl~~~~~~l~~~GggiG~rGpGE~~lE~drR 160 (411)
T COG2262 83 QLRNLEKELGVKVIDRTQLILDIFAQRARSREG--KLQVELAQLRYELPRLVGSGSHLSRLGGGIGFRGPGETQLETDRR 160 (411)
T ss_pred HHHHHHHHHCCEEEehHhHHHHHHHHHhccchh--hhhhhHHhhhhhhhHhHhhhhhcccccCCCCCCCCCchHHHHHHH
Confidence 345667788888999999999777766644433 668889999999999999999998433 789999999999
Q ss_pred CCccccccchhhcCCCcccc--------ccccCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEE
Q 006555 128 GVVEDHKVKPLYEKPVDFTK--------IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAK 199 (640)
Q Consensus 128 ~~~~~~~~~~l~~~l~~~~~--------~~~~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~ 199 (640)
.+ +.|+..+++++..+.+ ......|.|++|||+|+|||||+|+|++... .+.+..+ +|.|.....+.
T Consensus 161 ~i--r~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~-~~~d~LF--ATLdpttR~~~ 235 (411)
T COG2262 161 RI--RRRIAKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADV-YVADQLF--ATLDPTTRRIE 235 (411)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCe-ecccccc--ccccCceeEEE
Confidence 99 9999999999886554 3445789999999999999999999998653 3344444 89999999998
Q ss_pred EC-CeeEEEEeCCCCccccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHH-HHHHHHHh-CCCCcEEEEecC
Q 006555 200 LG-DLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-APQIKPIVAMNK 276 (640)
Q Consensus 200 ~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~L~~~-~~~~p~ilV~NK 276 (640)
+. |.++.+.||.||....|+.. -+.++.|++....||++++|+|++++...+..+ +.+.|.+. ..++|+|+|+||
T Consensus 236 l~~g~~vlLtDTVGFI~~LP~~L--V~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NK 313 (411)
T COG2262 236 LGDGRKVLLTDTVGFIRDLPHPL--VEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNK 313 (411)
T ss_pred eCCCceEEEecCccCcccCChHH--HHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEec
Confidence 87 68999999999998877543 377899999999999999999999985554433 45666664 347899999999
Q ss_pred CCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCChhHHHHHhccchHH
Q 006555 277 CESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 277 ~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~gi~eL~~~I~~~l~~ 326 (640)
+|+..+.. ....... +.+.++++||++|.|++.|++.|.+.+..
T Consensus 314 iD~~~~~~-----~~~~~~~-~~~~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 314 IDLLEDEE-----ILAELER-GSPNPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred ccccCchh-----hhhhhhh-cCCCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 99886532 1111112 22368999999999999999999987753
No 8
>PRK11058 GTPase HflX; Provisional
Probab=99.94 E-value=5.8e-27 Score=253.56 Aligned_cols=257 Identities=19% Similarity=0.195 Sum_probs=196.1
Q ss_pred hhhhHhhcCCChhhHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccccccC------CCCCccccCCCCC
Q 006555 55 AFFFSRFLGSPFYDFMCFLLLFVNVSIMYWFSGSLYQVGSSLKCNLLPEVPRGFCGVVQNE------ALEDTHVEPEPDG 128 (640)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~ 128 (640)
..-+...|+-.+++...++|-+|...+-..-+ ..|+..++.+|.+||+.+.+.+++++. |+|++.+|.+++.
T Consensus 89 ~~nle~~~~~~v~DR~~lil~IF~~rA~t~e~--klqvelA~l~y~~prl~~~~~~l~~~~gg~g~~g~ge~~~e~d~r~ 166 (426)
T PRK11058 89 ERNLERLCECRVIDRTGLILDIFAQRARTHEG--KLQVELAQLRHLATRLVRGWTHLERQKGGIGLRGPGETQLETDRRL 166 (426)
T ss_pred HHHHHHHHCCeEecchhHHHHHHHHhcCChHH--HHHHHHHhhhhhhhhhhccccchhhhcCCCCCCCCChhHhHHHHHH
Confidence 34567788999999999999887777655543 678888999999999998888888775 6899999999998
Q ss_pred CccccccchhhcCCCccccc--------cccCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEE
Q 006555 129 VVEDHKVKPLYEKPVDFTKI--------DINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL 200 (640)
Q Consensus 129 ~~~~~~~~~l~~~l~~~~~~--------~~~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~ 200 (640)
+ +.+++.+.+++..+... .....|+|+|||+||||||||+|+|++.+.. +.+.++ +|+|.....+.+
T Consensus 167 i--~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~--tTld~~~~~i~l 241 (426)
T PRK11058 167 L--RNRIVQILSRLERVEKQREQGRRARIKADVPTVSLVGYTNAGKSTLFNRITEARVY-AADQLF--ATLDPTLRRIDV 241 (426)
T ss_pred H--HHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCEEEEECCCCCCHHHHHHHHhCCcee-eccCCC--CCcCCceEEEEe
Confidence 8 88888888777655331 1124589999999999999999999998765 667777 899998888888
Q ss_pred CCe-eEEEEeCCCCccccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHH-HHHHHHHh-CCCCcEEEEecCC
Q 006555 201 GDL-RFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-APQIKPIVAMNKC 277 (640)
Q Consensus 201 ~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~L~~~-~~~~p~ilV~NK~ 277 (640)
.+. ++.+|||||+....+.. ... .+..+...+..||++|+|+|++++.+.++.. +.+++... ..++|+++|+||+
T Consensus 242 ~~~~~~~l~DTaG~~r~lp~~-lve-~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKi 319 (426)
T PRK11058 242 ADVGETVLADTVGFIRHLPHD-LVA-AFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKI 319 (426)
T ss_pred CCCCeEEEEecCcccccCCHH-HHH-HHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcc
Confidence 764 89999999996443322 222 3455778899999999999999877666543 34555543 2368999999999
Q ss_pred CCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCChhHHHHHhccchH
Q 006555 278 ESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVE 325 (640)
Q Consensus 278 Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~gi~eL~~~I~~~l~ 325 (640)
|+..... ... .....+....+++||++|.|+++|++.|.+.+.
T Consensus 320 DL~~~~~----~~~-~~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 320 DMLDDFE----PRI-DRDEENKPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred cCCCchh----HHH-HHHhcCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 9875311 111 112234433588999999999999999987764
No 9
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.94 E-value=3.5e-26 Score=242.18 Aligned_cols=253 Identities=20% Similarity=0.229 Sum_probs=188.5
Q ss_pred hhhhHhhcCCChhhHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccccccC------CCCCccccCCCCC
Q 006555 55 AFFFSRFLGSPFYDFMCFLLLFVNVSIMYWFSGSLYQVGSSLKCNLLPEVPRGFCGVVQNE------ALEDTHVEPEPDG 128 (640)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~ 128 (640)
..-+...|+-.+++...++|-+|...+-..-+ ..|+..++..|.+|++.+.+.++.+.. |++++.++.+++.
T Consensus 81 ~~nl~~~~~~~v~Dr~~lil~iF~~ra~t~e~--klqv~la~l~~~l~r~~~~~~~l~~~~~~i~~~g~gE~~~~~~~~~ 158 (351)
T TIGR03156 81 ERNLEKALGCRVIDRTGLILDIFAQRARTHEG--KLQVELAQLKYLLPRLVGGWTHLSRQGGGIGTRGPGETQLETDRRL 158 (351)
T ss_pred HHHHHHHhCCcccchHHHHHHHHHHhccChHH--HHHHHHHhccchhhhhhhhHHHHHhhcCCCCCCCCChhHHHHHHHH
Confidence 44567888999999999999888877765544 556667788999999887776665554 4566666667776
Q ss_pred CccccccchhhcCCCccccc--------cccCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEE
Q 006555 129 VVEDHKVKPLYEKPVDFTKI--------DINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL 200 (640)
Q Consensus 129 ~~~~~~~~~l~~~l~~~~~~--------~~~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~ 200 (640)
+ +.++..+++++..+... ..+..++|+|+|+||||||||+|+|++.. ..+.+.++ +|+|.....+.+
T Consensus 159 i--~~ri~~l~~~L~~~~~~~~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~--tT~d~~~~~i~~ 233 (351)
T TIGR03156 159 I--RERIAQLKKELEKVEKQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLF--ATLDPTTRRLDL 233 (351)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCc--cccCCEEEEEEe
Confidence 6 77888888777755431 12356899999999999999999999987 56777777 899999998888
Q ss_pred -CCeeEEEEeCCCCccccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHH-HHHHHHHhC-CCCcEEEEecCC
Q 006555 201 -GDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKHA-PQIKPIVAMNKC 277 (640)
Q Consensus 201 -~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~L~~~~-~~~p~ilV~NK~ 277 (640)
++.++.+|||||+....+.. .. +.+..+..++.+||++++|+|++++...++.. +.+++.... .++|+++|+||+
T Consensus 234 ~~~~~i~l~DT~G~~~~l~~~-li-e~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~ 311 (351)
T TIGR03156 234 PDGGEVLLTDTVGFIRDLPHE-LV-AAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKI 311 (351)
T ss_pred CCCceEEEEecCcccccCCHH-HH-HHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEee
Confidence 67899999999996443322 22 23456777899999999999999887665532 345555532 378999999999
Q ss_pred CCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCChhHHHHHhccc
Q 006555 278 ESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPS 323 (640)
Q Consensus 278 Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~gi~eL~~~I~~~ 323 (640)
|+..... . .... .+..+++++||++|.|+++|++.|.+.
T Consensus 312 Dl~~~~~-----v-~~~~-~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 312 DLLDEPR-----I-ERLE-EGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred cCCChHh-----H-HHHH-hCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 9975321 1 1111 122357999999999999999988653
No 10
>COG1159 Era GTPase [General function prediction only]
Probab=99.93 E-value=1.6e-25 Score=223.26 Aligned_cols=166 Identities=26% Similarity=0.382 Sum_probs=143.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 234 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 234 (640)
.|+|||+||||||||+|+|+|.+.++|++.+. |||....+.+..++.++.++||||+... .......+.+.+...+
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~Q--TTR~~I~GI~t~~~~QiIfvDTPGih~p--k~~l~~~m~~~a~~sl 83 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQ--TTRNRIRGIVTTDNAQIIFVDTPGIHKP--KHALGELMNKAARSAL 83 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcc--hhhhheeEEEEcCCceEEEEeCCCCCCc--chHHHHHHHHHHHHHh
Confidence 69999999999999999999999999999998 9999999999999999999999999854 3344455667888899
Q ss_pred hccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCChh
Q 006555 235 AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMT 314 (640)
Q Consensus 235 ~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~gi~ 314 (640)
.++|+++||+|++++....|..+++.|++. +.|+++++||+|..++................+..++++||++|.|++
T Consensus 84 ~dvDlilfvvd~~~~~~~~d~~il~~lk~~--~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~ 161 (298)
T COG1159 84 KDVDLILFVVDADEGWGPGDEFILEQLKKT--KTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVD 161 (298)
T ss_pred ccCcEEEEEEeccccCCccHHHHHHHHhhc--CCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHH
Confidence 999999999999999999998999998874 689999999999988654222223333445667789999999999999
Q ss_pred HHHHHhccchHH
Q 006555 315 ELYEALRPSVED 326 (640)
Q Consensus 315 eL~~~I~~~l~~ 326 (640)
.|.+.+.+.+++
T Consensus 162 ~L~~~i~~~Lpe 173 (298)
T COG1159 162 TLLEIIKEYLPE 173 (298)
T ss_pred HHHHHHHHhCCC
Confidence 999999988865
No 11
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.93 E-value=2.1e-25 Score=207.38 Aligned_cols=146 Identities=31% Similarity=0.433 Sum_probs=112.5
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHH-
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL- 436 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i- 436 (640)
++|+++|+||||||||+|+|+|.. ..++++||+|++...+.+.+++..+.++||||++........|. -+..++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~----v~~~~l~ 75 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEER----VARDYLL 75 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHH----HHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHH----HHHHHHh
Confidence 589999999999999999999987 88999999999999999999999999999999987632222221 223333
Q ss_pred -hhccEEEEEecccHH--------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEecc
Q 006555 437 -MRAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 507 (640)
Q Consensus 437 -~~advvllVvDa~~~--------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSA 507 (640)
..+|++++|+|+++. +..+.++|+|+|+||+|+..+.......+.+.+.+ ++|++++||
T Consensus 76 ~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L------------g~pvi~~sa 143 (156)
T PF02421_consen 76 SEKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERL------------GVPVIPVSA 143 (156)
T ss_dssp HTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHH------------TS-EEEEBT
T ss_pred hcCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHh------------CCCEEEEEe
Confidence 579999999999986 45678999999999999987655433334333222 689999999
Q ss_pred ccCCCHHHHHHHH
Q 006555 508 LEGRGRIAVMHQV 520 (640)
Q Consensus 508 k~g~gv~~l~~~i 520 (640)
++|+|+++++++|
T Consensus 144 ~~~~g~~~L~~~I 156 (156)
T PF02421_consen 144 RTGEGIDELKDAI 156 (156)
T ss_dssp TTTBTHHHHHHHH
T ss_pred CCCcCHHHHHhhC
Confidence 9999999998875
No 12
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.92 E-value=2.7e-24 Score=225.70 Aligned_cols=218 Identities=28% Similarity=0.338 Sum_probs=158.5
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHHh
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 437 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 437 (640)
..|+|||+||||||||+|+|++...++++++||+|||...+...+.+..+.++||+|+.... ++........+++.++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~-~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD-EDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCC-chHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999987542 12344556678899999
Q ss_pred hccEEEEEecccHH---------H-HHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEecc
Q 006555 438 RAHVVALVLDAEEV---------R-AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 507 (640)
Q Consensus 438 ~advvllVvDa~~~---------~-~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSA 507 (640)
.||++|||+|+..+ . ....++|+|+|+||+|-.+.+. .. .+ +.....-.+++|||
T Consensus 83 eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~--~~------------~e-fyslG~g~~~~ISA 147 (444)
T COG1160 83 EADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEE--LA------------YE-FYSLGFGEPVPISA 147 (444)
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhh--hH------------HH-HHhcCCCCceEeeh
Confidence 99999999999875 2 2245699999999999764311 01 11 11223346889999
Q ss_pred ccCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCCCCCCCCcEeeeeecCCCCCEEEEEecCCCCCCHHH--
Q 006555 508 LEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAE-- 585 (640)
Q Consensus 508 k~g~gv~~l~~~i~~~~~~~~~~i~t~~l~~~l~~~~~~~~~~~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y-- 585 (640)
.+|.|+.+|++++.+.+. .....+.. ......|+- +-.+|. -++++|-|..
T Consensus 148 ~Hg~Gi~dLld~v~~~l~-~~e~~~~~----------------~~~~~ikia----iiGrPN------vGKSsLiN~ilg 200 (444)
T COG1160 148 EHGRGIGDLLDAVLELLP-PDEEEEEE----------------EETDPIKIA----IIGRPN------VGKSSLINAILG 200 (444)
T ss_pred hhccCHHHHHHHHHhhcC-Cccccccc----------------ccCCceEEE----EEeCCC------CCchHHHHHhcc
Confidence 999999999999887643 11111000 000112222 223444 4566665553
Q ss_pred -HHH--------HHHHhHhhCCCCceeEEEEEeecCCCCCCC
Q 006555 586 -LRF--------LTKSLKEDFDLGGIPIRITQRSVPRKCGSS 618 (640)
Q Consensus 586 -~r~--------l~~~~~~~~~~~g~pi~~~~~~~~~~~~~~ 618 (640)
.|- ..+.+..+|.+.|..+.++++++.|+++.-
T Consensus 201 eeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki 242 (444)
T COG1160 201 EERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKI 242 (444)
T ss_pred CceEEecCCCCccccceeeeEEECCeEEEEEECCCCCccccc
Confidence 122 238899999999999999999998776543
No 13
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.90 E-value=1.8e-23 Score=220.20 Aligned_cols=155 Identities=34% Similarity=0.472 Sum_probs=132.3
Q ss_pred cCCceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 355 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 355 ~~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
...++++|+|+||||||||+|+|++.++++|++.||||||..+..+.++|.++.|+||||+++. .+..|...+.++++
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet--~d~VE~iGIeRs~~ 292 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRET--DDVVERIGIERAKK 292 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccC--ccHHHHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999999999999999999999854 45578899999999
Q ss_pred HHhhccEEEEEecccHH---------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEe
Q 006555 435 NLMRAHVVALVLDAEEV---------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFT 505 (640)
Q Consensus 435 ~i~~advvllVvDa~~~---------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~i 505 (640)
.+..||++|+|+|++++ .....++|+++|.||+||....... .. ....+.+++.+
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~~~------------~~----~~~~~~~~i~i 356 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIELE------------SE----KLANGDAIISI 356 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhcccccccc------------hh----hccCCCceEEE
Confidence 99999999999999984 2234678999999999998763211 00 11224479999
Q ss_pred ccccCCCHHHHHHHHHHHHHHH
Q 006555 506 SALEGRGRIAVMHQVIDTYQKW 527 (640)
Q Consensus 506 SAk~g~gv~~l~~~i~~~~~~~ 527 (640)
||++|+|+++|.++|.+.+...
T Consensus 357 Sa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 357 SAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EecCccCHHHHHHHHHHHHhhc
Confidence 9999999999999998877654
No 14
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.90 E-value=2.7e-23 Score=193.24 Aligned_cols=153 Identities=30% Similarity=0.421 Sum_probs=116.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 234 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 234 (640)
+|+++|.||||||||||+|+|.+ ..+++.|| +|.+...+.+..++..+.++||||+..-.+.. .. + +.+..++
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG--~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s-~e-e--~v~~~~l 74 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK-QKVGNWPG--TTVEKKEGIFKLGDQQVELVDLPGIYSLSSKS-EE-E--RVARDYL 74 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-EEEEESTT--SSSEEEEEEEEETTEEEEEEE----SSSSSSS-HH-H--HHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ceecCCCC--CCeeeeeEEEEecCceEEEEECCCcccCCCCC-cH-H--HHHHHHH
Confidence 79999999999999999999998 67899999 99999999999999999999999987543221 11 1 2333333
Q ss_pred --hccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCC
Q 006555 235 --AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLG 312 (640)
Q Consensus 235 --~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~g 312 (640)
...|++++|+|++. ...+..+..++.+. ++|+++|+||+|......... +.......+|. +++++||++|.|
T Consensus 75 ~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~--g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~-pvi~~sa~~~~g 148 (156)
T PF02421_consen 75 LSEKPDLIIVVVDATN--LERNLYLTLQLLEL--GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGV-PVIPVSARTGEG 148 (156)
T ss_dssp HHTSSSEEEEEEEGGG--HHHHHHHHHHHHHT--TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS--EEEEBTTTTBT
T ss_pred hhcCCCEEEEECCCCC--HHHHHHHHHHHHHc--CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCC-CEEEEEeCCCcC
Confidence 68999999999986 34445677777776 899999999999887544322 23344455777 799999999999
Q ss_pred hhHHHHHh
Q 006555 313 MTELYEAL 320 (640)
Q Consensus 313 i~eL~~~I 320 (640)
+++|+++|
T Consensus 149 ~~~L~~~I 156 (156)
T PF02421_consen 149 IDELKDAI 156 (156)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99999875
No 15
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.90 E-value=7.7e-23 Score=210.44 Aligned_cols=164 Identities=21% Similarity=0.256 Sum_probs=125.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 234 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 234 (640)
+|+++|+||||||||+|+|++.+.+++++.++ ||++...+....++.++.+|||||+.... ......+...+..++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~--TTr~~i~~i~~~~~~qii~vDTPG~~~~~--~~l~~~~~~~~~~~l 77 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQ--TTRNRISGIHTTGASQIIFIDTPGFHEKK--HSLNRLMMKEARSAI 77 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCC--cccCcEEEEEEcCCcEEEEEECcCCCCCc--chHHHHHHHHHHHHH
Confidence 69999999999999999999999888988888 99998877777777889999999997432 122223445567788
Q ss_pred hccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCChh
Q 006555 235 AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMT 314 (640)
Q Consensus 235 ~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~gi~ 314 (640)
..+|++++|+|++++.+.. ..+.+.++.. ++|+++|+||+|+..... ............++.+++++||++|.|++
T Consensus 78 ~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~--~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 78 GGVDLILFVVDSDQWNGDG-EFVLTKLQNL--KRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred hhCCEEEEEEECCCCCchH-HHHHHHHHhc--CCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 9999999999999866554 4556666654 789999999999974321 11111222233455578999999999999
Q ss_pred HHHHHhccchHH
Q 006555 315 ELYEALRPSVED 326 (640)
Q Consensus 315 eL~~~I~~~l~~ 326 (640)
+|++.|.+.+++
T Consensus 154 ~L~~~l~~~l~~ 165 (270)
T TIGR00436 154 FLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHhCCC
Confidence 999999887754
No 16
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.90 E-value=8e-23 Score=215.26 Aligned_cols=160 Identities=29% Similarity=0.398 Sum_probs=131.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 233 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 233 (640)
.+|+|+|+||||||||+|+|++++.++|++.|| ||||.....+.++|.++.++||+|+-+... .....-.......
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~G--TTRDviee~i~i~G~pv~l~DTAGiRet~d--~VE~iGIeRs~~~ 293 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAG--TTRDVIEEDINLNGIPVRLVDTAGIRETDD--VVERIGIERAKKA 293 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceEecCCCC--CccceEEEEEEECCEEEEEEecCCcccCcc--HHHHHHHHHHHHH
Confidence 599999999999999999999999999999999 999999999999999999999999984332 3333345677889
Q ss_pred HhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCCh
Q 006555 234 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 313 (640)
Q Consensus 234 ~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~gi 313 (640)
+++||+||+|+|++.+.+..+..+.+ ....++|+++|.||+|+..+...... ....+. ..+.+||++|+|+
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~~~~---~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~-~~i~iSa~t~~Gl 364 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLALIE---LLPKKKPIIVVLNKADLVSKIELESE-----KLANGD-AIISISAKTGEGL 364 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHHHHH---hcccCCCEEEEEechhcccccccchh-----hccCCC-ceEEEEecCccCH
Confidence 99999999999999988888777666 22337899999999999876431111 111222 5799999999999
Q ss_pred hHHHHHhccchHH
Q 006555 314 TELYEALRPSVED 326 (640)
Q Consensus 314 ~eL~~~I~~~l~~ 326 (640)
++|.++|...+..
T Consensus 365 ~~L~~~i~~~~~~ 377 (454)
T COG0486 365 DALREAIKQLFGK 377 (454)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887754
No 17
>COG1159 Era GTPase [General function prediction only]
Probab=99.89 E-value=5.3e-23 Score=205.24 Aligned_cols=164 Identities=26% Similarity=0.349 Sum_probs=131.0
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 436 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 436 (640)
...|+|+|+||||||||+|+|+|+..+++++.++|||..+.+..+.+..++.++||||+.+++ .....+....+..++
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk--~~l~~~m~~~a~~sl 83 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK--HALGELMNKAARSAL 83 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc--hHHHHHHHHHHHHHh
Confidence 357999999999999999999999999999999999999999999999999999999998773 234566677788999
Q ss_pred hhccEEEEEecccHH---------HHHH-cCCcEEEEEeCCCCCCCcc-chHHHHHHHHHcHHHHHhhCCCCCCCcEEEe
Q 006555 437 MRAHVVALVLDAEEV---------RAVE-EGRGLVVIVNKMDLLSGRQ-NSALYKRVKEAVPQEIQTVIPQVTGIPVVFT 505 (640)
Q Consensus 437 ~~advvllVvDa~~~---------~~~~-~~~p~Ilv~NK~Dl~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~i 505 (640)
..+|++++|+|+++. +.+. ...|+++++||+|..+... ... +.......+ ....++++
T Consensus 84 ~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~--------~~~~~~~~~---~f~~ivpi 152 (298)
T COG1159 84 KDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLK--------LIAFLKKLL---PFKEIVPI 152 (298)
T ss_pred ccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHH--------HHHHHHhhC---CcceEEEe
Confidence 999999999999984 2222 2579999999999987643 111 111222222 23489999
Q ss_pred ccccCCCHHHHHHHHHHHHHHHhcCCCh
Q 006555 506 SALEGRGRIAVMHQVIDTYQKWCLRLPT 533 (640)
Q Consensus 506 SAk~g~gv~~l~~~i~~~~~~~~~~i~t 533 (640)
||++|.|++.+.+.+...+.+.....|.
T Consensus 153 SA~~g~n~~~L~~~i~~~Lpeg~~~yp~ 180 (298)
T COG1159 153 SALKGDNVDTLLEIIKEYLPEGPWYYPE 180 (298)
T ss_pred eccccCCHHHHHHHHHHhCCCCCCcCCh
Confidence 9999999999999998887665444443
No 18
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.4e-22 Score=187.50 Aligned_cols=162 Identities=19% Similarity=0.285 Sum_probs=136.6
Q ss_pred ccCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHH
Q 006555 150 INLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTA 227 (640)
Q Consensus 150 ~~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~ 227 (640)
.+.+++|+|+|++|||||+|+-|+.+..... ....+...|.....+.++| .++++|||+|++ |++
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e---~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQE----------RFr 72 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTE---SYISTIGVDFKIRTVELDGKTIKLQIWDTAGQE----------RFR 72 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcch---hhcceeeeEEEEEEeeecceEEEEEeeeccccH----------HHh
Confidence 4557899999999999999999999876633 2234477888888888877 479999999998 888
Q ss_pred HHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHh----CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcE
Q 006555 228 GMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPI 303 (640)
Q Consensus 228 ~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~----~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i 303 (640)
..+..|+++|++||+|+|+++..++. .+..|+.+. ..++|.++|+||||+.+...++.++....+..++....+
T Consensus 73 tit~syYR~ahGii~vyDiT~~~SF~--~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ 150 (205)
T KOG0084|consen 73 TITSSYYRGAHGIIFVYDITKQESFN--NVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFL 150 (205)
T ss_pred hhhHhhccCCCeEEEEEEcccHHHhh--hHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCccee
Confidence 99999999999999999999987777 455666553 346799999999999998888888887888888885589
Q ss_pred EeeccCCCChhHHHHHhccchHH
Q 006555 304 AISAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 304 ~iSA~~g~gi~eL~~~I~~~l~~ 326 (640)
++||+.+.|+++.|..|...+..
T Consensus 151 ETSAK~~~NVe~~F~~la~~lk~ 173 (205)
T KOG0084|consen 151 ETSAKDSTNVEDAFLTLAKELKQ 173 (205)
T ss_pred ecccCCccCHHHHHHHHHHHHHH
Confidence 99999999999999998877654
No 19
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=99.88 E-value=7.9e-23 Score=168.09 Aligned_cols=80 Identities=43% Similarity=0.720 Sum_probs=64.4
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCCCCcEeeeeecCCCCCEEEEEecCCCCCCHHHHHHHHHHhHhhCCCCceeEEEEEe
Q 006555 530 RLPTSRLNRWLRKVMGRHSWKDQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQR 609 (640)
Q Consensus 530 ~i~t~~l~~~l~~~~~~~~~~~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~~~~~~~~g~pi~~~~~ 609 (640)
+++|+.||+||++++..+++|..|+++|++|++|++.+||+|++|||+++.++++|+|||+|+||++|||.|+||+|.||
T Consensus 1 Ri~T~~LN~~l~~~~~~~~pp~~g~~~Ki~Y~tQv~~~PPtFv~f~N~~~~~~~sY~ryL~n~lRe~f~f~G~Pi~l~~R 80 (80)
T PF14714_consen 1 RISTSELNRFLQKALERHPPPSKGKRLKIYYATQVGTRPPTFVLFVNDPELLPESYKRYLENQLREAFGFEGVPIRLIFR 80 (80)
T ss_dssp ---HHHHHHHHHHHHCCS--SETTCC--EEEEEEEETTTTEEEEEES-CCC--HHHHHHHHHHHHHHH--TTS--EEEEE
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCceeEEEEEEeCCCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHCCCCceeEEEEeC
Confidence 58999999999999999988878899999999999999999999999999999999999999999999999999999986
No 20
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=1.7e-21 Score=182.58 Aligned_cols=156 Identities=41% Similarity=0.668 Sum_probs=126.2
Q ss_pred EEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHHHhc
Q 006555 157 MIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAK 236 (640)
Q Consensus 157 ~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 236 (640)
+++|.+|||||||+|+|++.+...++..++ +|++.........+..+.+|||||+..... .....+...+...+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~~~~~~~~~~~~~~ 76 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPG--VTRDRIYGEAEWGGREFILIDTGGIEPDDE--GISKEIREQAELAIEE 76 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCC--ceeCceeEEEEECCeEEEEEECCCCCCchh--HHHHHHHHHHHHHHHh
Confidence 589999999999999999987666666666 899998888888899999999999985432 2223344556677899
Q ss_pred cceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCChhHH
Q 006555 237 TQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTEL 316 (640)
Q Consensus 237 ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~gi~eL 316 (640)
+|++++|+|++++.+..+.++.++++.. +.|+++|+||+|+..... ....+..++..+++++||++|.|++++
T Consensus 77 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~--~~piiiv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 77 ADVILFVVDGREGLTPADEEIAKYLRKS--KKPVILVVNKVDNIKEED-----EAAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred CCEEEEEEeccccCCccHHHHHHHHHhc--CCCEEEEEECcccCChHH-----HHHHHHhcCCCCeEEEecccCCCHHHH
Confidence 9999999999988877777788888775 689999999999976432 133455567767899999999999999
Q ss_pred HHHhccc
Q 006555 317 YEALRPS 323 (640)
Q Consensus 317 ~~~I~~~ 323 (640)
++.|.+.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9998764
No 21
>PRK15494 era GTPase Era; Provisional
Probab=99.87 E-value=2.1e-21 Score=205.49 Aligned_cols=166 Identities=26% Similarity=0.304 Sum_probs=129.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 152 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 152 ~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
...+|+++|+||||||||+|+|++.+.+++++.++ +|++...+.+..++.++.+|||||+.... ......+.+.+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~--tTr~~~~~~~~~~~~qi~~~DTpG~~~~~--~~l~~~~~r~~~ 126 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQ--TTRSIITGIITLKDTQVILYDTPGIFEPK--GSLEKAMVRCAW 126 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCC--CccCcEEEEEEeCCeEEEEEECCCcCCCc--ccHHHHHHHHHH
Confidence 34689999999999999999999999888888777 89998888888899999999999996322 123334455666
Q ss_pred HHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcC-CCCcEEeeccCC
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLG-FGDPIAISAETG 310 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g-~~~~i~iSA~~g 310 (640)
.++..||++++|+|++++....+..+++.++.. +.|.++|+||+|+.... ..+....+...+ ...++++||++|
T Consensus 127 ~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~~---~~~~~~~l~~~~~~~~i~~iSAktg 201 (339)
T PRK15494 127 SSLHSADLVLLIIDSLKSFDDITHNILDKLRSL--NIVPIFLLNKIDIESKY---LNDIKAFLTENHPDSLLFPISALSG 201 (339)
T ss_pred HHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc--CCCEEEEEEhhcCcccc---HHHHHHHHHhcCCCcEEEEEeccCc
Confidence 778999999999999887766666666777654 67889999999986431 222333333333 346899999999
Q ss_pred CChhHHHHHhccchHH
Q 006555 311 LGMTELYEALRPSVED 326 (640)
Q Consensus 311 ~gi~eL~~~I~~~l~~ 326 (640)
.|++++++.|.+.+++
T Consensus 202 ~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 202 KNIDGLLEYITSKAKI 217 (339)
T ss_pred cCHHHHHHHHHHhCCC
Confidence 9999999999887754
No 22
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=5.5e-22 Score=185.15 Aligned_cols=152 Identities=20% Similarity=0.208 Sum_probs=121.2
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHH
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 433 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 433 (640)
..+||+++|+.|||||+|+.++.+.. +.-+......+|.....++++|. +++||||+|+.++. ..+.
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~-f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFr----------tit~ 76 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDT-FTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFR----------TITS 76 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCC-cchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHh----------hhhH
Confidence 45899999999999999999998653 44445556677888888888887 57899999986553 3566
Q ss_pred HHHhhccEEEEEecccHH-------H-------HHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCC
Q 006555 434 KNLMRAHVVALVLDAEEV-------R-------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 499 (640)
Q Consensus 434 ~~i~~advvllVvDa~~~-------~-------~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 499 (640)
.++++||++|+|||+++. . ....+.|.++|+||+|+.+. +.+..+.++.++...+
T Consensus 77 syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~-----------~~v~~~~a~~fa~~~~ 145 (205)
T KOG0084|consen 77 SYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEK-----------RVVSTEEAQEFADELG 145 (205)
T ss_pred hhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhh-----------eecCHHHHHHHHHhcC
Confidence 899999999999999976 1 12246799999999999765 3445556666666778
Q ss_pred Cc-EEEeccccCCCHHHHHHHHHHHHHHHhc
Q 006555 500 IP-VVFTSALEGRGRIAVMHQVIDTYQKWCL 529 (640)
Q Consensus 500 ~~-~v~iSAk~g~gv~~l~~~i~~~~~~~~~ 529 (640)
.| ++++|||++.||++.|..+...+.+...
T Consensus 146 ~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~ 176 (205)
T KOG0084|consen 146 IPIFLETSAKDSTNVEDAFLTLAKELKQRKG 176 (205)
T ss_pred CcceeecccCCccCHHHHHHHHHHHHHHhcc
Confidence 88 9999999999999999999887665443
No 23
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=2.2e-21 Score=203.96 Aligned_cols=172 Identities=26% Similarity=0.321 Sum_probs=127.3
Q ss_pred ccccCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEE-CCeeEEEEeCCCCccccCccchHHHH
Q 006555 148 IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-GDLRFKVLDSAGLETEATSGSILDRT 226 (640)
Q Consensus 148 ~~~~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~ 226 (640)
++...++.|+|||+||||||||+|+|++.+. .++++++ ||++...+.+.+ ++.++.+|||||+.+....+.- .
T Consensus 153 lelk~~adVglVG~PNaGKSTLln~ls~a~~-~va~ypf--TT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~g---L 226 (335)
T PRK12299 153 LELKLLADVGLVGLPNAGKSTLISAVSAAKP-KIADYPF--TTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAG---L 226 (335)
T ss_pred EEEcccCCEEEEcCCCCCHHHHHHHHHcCCC-ccCCCCC--ceeCceEEEEEeCCCcEEEEEeCCCccCCCCcccc---H
Confidence 4566678999999999999999999998764 4677777 999999999988 5678999999999865543322 2
Q ss_pred HHHHHHHHhccceEEEEeecCCCCChhhHH-HHHHHHHhC---CCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCc
Q 006555 227 AGMTANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKHA---PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDP 302 (640)
Q Consensus 227 ~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~L~~~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~ 302 (640)
......++++++++++|+|+++..+.++.+ +.+.|.... .++|+++|+||+|+..................+. ++
T Consensus 227 g~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~-~i 305 (335)
T PRK12299 227 GHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGG-PV 305 (335)
T ss_pred HHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCC-CE
Confidence 234466788999999999999765555433 344444432 3689999999999976433221122222233443 78
Q ss_pred EEeeccCCCChhHHHHHhccchHH
Q 006555 303 IAISAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 303 i~iSA~~g~gi~eL~~~I~~~l~~ 326 (640)
+++||++++|+++|++.|.+.+.+
T Consensus 306 ~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 306 FLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999887654
No 24
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.5e-21 Score=183.50 Aligned_cols=164 Identities=20% Similarity=0.238 Sum_probs=138.9
Q ss_pred cccCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCe--eEEEEeCCCCccccCccchHHHH
Q 006555 149 DINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRT 226 (640)
Q Consensus 149 ~~~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~ 226 (640)
..+..++|+++|++|||||+++-++....... ....+...|.....+.+++. ++++|||+|++ ++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~---~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQe----------rf 74 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNT---SFISTIGIDFKIKTIELDGKKIKLQIWDTAGQE----------RF 74 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcC---CccceEEEEEEEEEEEeCCeEEEEEEEEcccch----------hH
Confidence 34567899999999999999999999876532 22334678888888888774 68999999999 88
Q ss_pred HHHHHHHHhccceEEEEeecCCCCChhh-HHHHHHHHHhCC-CCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEE
Q 006555 227 AGMTANVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHAP-QIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 304 (640)
Q Consensus 227 ~~~~~~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~L~~~~~-~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~ 304 (640)
..++..|++.|+.+++|||+++..+.++ ..|.+++.+..+ +.|.+||+||+|+...+.+..+.....+.++|. .+++
T Consensus 75 ~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~-~F~E 153 (207)
T KOG0078|consen 75 RTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGI-KFFE 153 (207)
T ss_pred HHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCC-eEEE
Confidence 8999999999999999999999888875 335566666533 899999999999999888888888888999998 8999
Q ss_pred eeccCCCChhHHHHHhccchHH
Q 006555 305 ISAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 305 iSA~~g~gi~eL~~~I~~~l~~ 326 (640)
+||++|.||++.+-.+.+.+..
T Consensus 154 tSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 154 TSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred ccccCCCCHHHHHHHHHHHHHh
Confidence 9999999999999988876654
No 25
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.87 E-value=1.2e-21 Score=201.53 Aligned_cols=156 Identities=24% Similarity=0.307 Sum_probs=117.3
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHHhh
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 438 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 438 (640)
+|+++|+||||||||+|+|++.....+++.++||++...+....++.++.+|||||+.+... .........+..++..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~--~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH--SLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc--hHHHHHHHHHHHHHhh
Confidence 68999999999999999999998888999999999988777777778899999999865421 1122233445678889
Q ss_pred ccEEEEEecccHH---------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEecccc
Q 006555 439 AHVVALVLDAEEV---------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALE 509 (640)
Q Consensus 439 advvllVvDa~~~---------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~ 509 (640)
+|++++|+|+++. .....++|+++|+||+|+..... ..+.+ ...... ....+++++||++
T Consensus 80 aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~~~---~~~~~-----~~~~~~---~~~~~v~~iSA~~ 148 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFKDK---LLPLI-----DKYAIL---EDFKDIVPISALT 148 (270)
T ss_pred CCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCHHH---HHHHH-----HHHHhh---cCCCceEEEecCC
Confidence 9999999999864 12235789999999999974321 11111 111111 1223799999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 006555 510 GRGRIAVMHQVIDTYQKW 527 (640)
Q Consensus 510 g~gv~~l~~~i~~~~~~~ 527 (640)
|.|++++++.+.+.+...
T Consensus 149 g~gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 149 GDNTSFLAAFIEVHLPEG 166 (270)
T ss_pred CCCHHHHHHHHHHhCCCC
Confidence 999999999998876543
No 26
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.87 E-value=2.2e-21 Score=183.27 Aligned_cols=156 Identities=23% Similarity=0.285 Sum_probs=117.1
Q ss_pred HHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccC
Q 006555 230 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 309 (640)
Q Consensus 230 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~ 309 (640)
.+..+.++|++++|+|++++....+..+.+.+.....++|+++|+||+|+.++.. .......+.+......+++||++
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~--~~~~~~~~~~~~~~~~~~iSa~~ 79 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWV--TARWVKILSKEYPTIAFHASINN 79 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHH--HHHHHHHHhcCCcEEEEEeeccc
Confidence 4567899999999999999877777788888876544689999999999975321 11222222222111257899999
Q ss_pred CCChhHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEeCCCCchHHHHHHHhcCCceeecCcc
Q 006555 310 GLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA 389 (640)
Q Consensus 310 g~gi~eL~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~ 389 (640)
+.|+++|++.+.+.+... .....++|+++|.||||||||+|+|.+.....+++.+
T Consensus 80 ~~~~~~L~~~l~~~~~~~-------------------------~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~ 134 (157)
T cd01858 80 PFGKGSLIQLLRQFSKLH-------------------------SDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIP 134 (157)
T ss_pred cccHHHHHHHHHHHHhhh-------------------------ccccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCC
Confidence 999999999987643210 0012468999999999999999999999989999999
Q ss_pred cceeeeEEEEEEECCeEEEEEEeCCC
Q 006555 390 GLTRDSVRVHFEYQGRTVYLVDTAGW 415 (640)
Q Consensus 390 gtT~d~~~~~~~~~~~~~~liDTpG~ 415 (640)
|+|++..... .+..+.|+||||+
T Consensus 135 g~T~~~~~~~---~~~~~~liDtPGi 157 (157)
T cd01858 135 GETKVWQYIT---LMKRIYLIDCPGV 157 (157)
T ss_pred CeeEeEEEEE---cCCCEEEEECcCC
Confidence 9999865433 2345899999995
No 27
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=4e-21 Score=178.49 Aligned_cols=159 Identities=18% Similarity=0.267 Sum_probs=132.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|..+|||||||++++.+.+- ....+++..|.....+.+.| .+++||||+|++ ++..++.
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd---~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQE----------RFrslip 89 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFD---NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRSLIP 89 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhc---ccccceeeeEEEEEEEEEcCcEEEEEEEecccHH----------HHhhhhh
Confidence 69999999999999999999987652 23344578888888888877 478999999999 8999999
Q ss_pred HHHhccceEEEEeecCCCCChhhH-HHHHHHHHh-CC-CCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeecc
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-AP-QIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~-~~-~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~ 308 (640)
.|++++.++|+|+|+++..++++. .+++-++.. .. +.-++||+||.||.++++...++....+.+++. .++++||+
T Consensus 90 sY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a-~f~etsak 168 (221)
T KOG0094|consen 90 SYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNA-EFIETSAK 168 (221)
T ss_pred hhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCc-EEEEeccc
Confidence 999999999999999998888852 233333333 22 467789999999999988877777788888888 88999999
Q ss_pred CCCChhHHHHHhccchHH
Q 006555 309 TGLGMTELYEALRPSVED 326 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~l~~ 326 (640)
.|.||.++|..|...+++
T Consensus 169 ~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 169 AGENVKQLFRRIAAALPG 186 (221)
T ss_pred CCCCHHHHHHHHHHhccC
Confidence 999999999999888765
No 28
>PRK00089 era GTPase Era; Reviewed
Probab=99.86 E-value=6.9e-21 Score=198.39 Aligned_cols=167 Identities=24% Similarity=0.365 Sum_probs=128.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 233 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 233 (640)
..|+|+|.||||||||+|+|++.+.+.++..+. +|++...+....++.++.+|||||+.... ......+...+...
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~--tt~~~i~~i~~~~~~qi~~iDTPG~~~~~--~~l~~~~~~~~~~~ 81 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQ--TTRHRIRGIVTEDDAQIIFVDTPGIHKPK--RALNRAMNKAAWSS 81 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCC--cccccEEEEEEcCCceEEEEECCCCCCch--hHHHHHHHHHHHHH
Confidence 369999999999999999999999988888887 88888877777677899999999997432 12223344566778
Q ss_pred HhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCCh
Q 006555 234 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 313 (640)
Q Consensus 234 ~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~gi 313 (640)
+..+|++++|+|++++.+..+..+.+.++.. +.|+++|+||+|+..................++.+++++||++|.|+
T Consensus 82 ~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~--~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv 159 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGPGDEFILEKLKKV--KTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV 159 (292)
T ss_pred HhcCCEEEEEEeCCCCCChhHHHHHHHHhhc--CCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence 8999999999999987777766777777643 68999999999997432211111222222345668899999999999
Q ss_pred hHHHHHhccchHH
Q 006555 314 TELYEALRPSVED 326 (640)
Q Consensus 314 ~eL~~~I~~~l~~ 326 (640)
++|++.+.+.+++
T Consensus 160 ~~L~~~L~~~l~~ 172 (292)
T PRK00089 160 DELLDVIAKYLPE 172 (292)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999887753
No 29
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.86 E-value=9.4e-21 Score=180.26 Aligned_cols=163 Identities=25% Similarity=0.236 Sum_probs=112.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 233 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 233 (640)
|+|+++|++|||||||+|+|++.... +...++ +|.+........++.++.+|||||+......... .........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-~~~~~~--~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~--~~~~~~~~~ 75 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPF--TTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERN--TIEMQAITA 75 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-cCCCCC--cccceeEEEEccCceEEEEEECCCcCCccccCCc--hHHHHHHHH
Confidence 58999999999999999999997643 333444 7888887777778899999999999632211111 111111212
Q ss_pred -HhccceEEEEeecCCCCCh--h-hHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccC
Q 006555 234 -LAKTQFAIFMIDVRSGLHP--L-DLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 309 (640)
Q Consensus 234 -~~~ad~vl~VvD~s~~~~~--~-~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~ 309 (640)
...+|++++|+|+++..+. + ..++.+.++....+.|+++|+||+|+........ ...+...+..+++++||++
T Consensus 76 ~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~---~~~~~~~~~~~~~~~Sa~~ 152 (168)
T cd01897 76 LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE---IEEEEELEGEEVLKISTLT 152 (168)
T ss_pred HHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH---HHHhhhhccCceEEEEecc
Confidence 2346899999999876542 2 2345555555445789999999999976433211 2222333334789999999
Q ss_pred CCChhHHHHHhccch
Q 006555 310 GLGMTELYEALRPSV 324 (640)
Q Consensus 310 g~gi~eL~~~I~~~l 324 (640)
|.|++++++.+.+.+
T Consensus 153 ~~gi~~l~~~l~~~~ 167 (168)
T cd01897 153 EEGVDEVKNKACELL 167 (168)
T ss_pred cCCHHHHHHHHHHHh
Confidence 999999999987654
No 30
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.86 E-value=1.7e-21 Score=213.38 Aligned_cols=177 Identities=25% Similarity=0.321 Sum_probs=132.8
Q ss_pred ccccchhhcCCCccccc-----cccCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEE
Q 006555 132 DHKVKPLYEKPVDFTKI-----DINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFK 206 (640)
Q Consensus 132 ~~~~~~l~~~l~~~~~~-----~~~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~ 206 (640)
..+++.+++++..+... .....++|+++|+||||||||+|+|++.+.+++++.++ +|+|.....+.+++.++.
T Consensus 189 ~~~i~~l~~~l~~l~~~~~~~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~g--tT~d~~~~~i~~~g~~i~ 266 (449)
T PRK05291 189 LEKLEELIAELEALLASARQGEILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAG--TTRDVIEEHINLDGIPLR 266 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC--cccccEEEEEEECCeEEE
Confidence 45566666665543321 11234699999999999999999999988888888888 999999999999999999
Q ss_pred EEeCCCCccccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccc
Q 006555 207 VLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS 286 (640)
Q Consensus 207 liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~ 286 (640)
+|||||+.+. .+.........+..++..+|++++|+|++++.+.++.+++. . ..++|+++|+||+|+.......
T Consensus 267 l~DT~G~~~~--~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~---~-~~~~piiiV~NK~DL~~~~~~~ 340 (449)
T PRK05291 267 LIDTAGIRET--DDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILE---E-LKDKPVIVVLNKADLTGEIDLE 340 (449)
T ss_pred EEeCCCCCCC--ccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHH---h-cCCCCcEEEEEhhhccccchhh
Confidence 9999999732 11221122345677899999999999999887776544332 2 3478999999999997543211
Q ss_pred hHHHHHHHHhcCCCCcEEeeccCCCChhHHHHHhccchH
Q 006555 287 LAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVE 325 (640)
Q Consensus 287 ~~~~~~~~~~~g~~~~i~iSA~~g~gi~eL~~~I~~~l~ 325 (640)
...+ .+++++||++|.|+++|++.|.+.+.
T Consensus 341 --------~~~~-~~~i~iSAktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 341 --------EENG-KPVIRISAKTGEGIDELREAIKELAF 370 (449)
T ss_pred --------hccC-CceEEEEeeCCCCHHHHHHHHHHHHh
Confidence 1222 36799999999999999999987664
No 31
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=4e-21 Score=182.18 Aligned_cols=150 Identities=20% Similarity=0.174 Sum_probs=123.1
Q ss_pred cCCceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHH
Q 006555 355 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQS 432 (640)
Q Consensus 355 ~~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~ 432 (640)
+..+||+++|+++||||+++.++.. +.+..+......+|.....++.+|. .+++|||+|+.++. ..+
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d-~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~----------ti~ 78 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSD-DSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFR----------TIT 78 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhh-ccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHH----------HHH
Confidence 4568999999999999999999984 4455566666778888888888887 45799999976553 346
Q ss_pred HHHHhhccEEEEEecccHH--------------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCC
Q 006555 433 RKNLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 498 (640)
Q Consensus 433 ~~~i~~advvllVvDa~~~--------------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 498 (640)
..|+++|+++++|||.++. +....+.|.+||+||+|+... +.+..+.++.++...
T Consensus 79 ~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~-----------R~V~~e~ge~lA~e~ 147 (207)
T KOG0078|consen 79 TAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEK-----------RQVSKERGEALAREY 147 (207)
T ss_pred HHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccc-----------ccccHHHHHHHHHHh
Confidence 6899999999999999976 122358899999999999764 455666677777777
Q ss_pred CCcEEEeccccCCCHHHHHHHHHHHHHH
Q 006555 499 GIPVVFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 499 ~~~~v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
+++++++|||+|.||++.|..+++.+.+
T Consensus 148 G~~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 148 GIKFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred CCeEEEccccCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999988775
No 32
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.86 E-value=1.4e-20 Score=178.43 Aligned_cols=173 Identities=23% Similarity=0.276 Sum_probs=135.2
Q ss_pred cccccccCCCEEEEEeCCCCCHHHHHHHHHcCC-ceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchH
Q 006555 145 FTKIDINLLPTVMIIGRPNVGKSALFNRLIRRR-EALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSIL 223 (640)
Q Consensus 145 ~~~~~~~~~~~V~lvG~~nvGKSSLin~L~~~~-~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ 223 (640)
+.+.+.+..+.|+++|++|||||||+|+|++++ .+.++.+|| .|+...+..+. + .+.++|.||+....-.....
T Consensus 16 ~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPG--rTq~iNff~~~--~-~~~lVDlPGYGyAkv~k~~~ 90 (200)
T COG0218 16 IKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPG--RTQLINFFEVD--D-ELRLVDLPGYGYAKVPKEVK 90 (200)
T ss_pred HhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCC--ccceeEEEEec--C-cEEEEeCCCcccccCCHHHH
Confidence 345566678899999999999999999999965 699999999 88888766554 2 38999999999776555666
Q ss_pred HHHHHHHHHHHhc---cceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCC-
Q 006555 224 DRTAGMTANVLAK---TQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF- 299 (640)
Q Consensus 224 ~~~~~~~~~~~~~---ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~- 299 (640)
+++..++.+|++. -.++++++|++++....|.++.+|+... +.|+++|+||+|..+..+.... .......++.
T Consensus 91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~--~i~~~vv~tK~DKi~~~~~~k~-l~~v~~~l~~~ 167 (200)
T COG0218 91 EKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL--GIPVIVVLTKADKLKKSERNKQ-LNKVAEELKKP 167 (200)
T ss_pred HHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEccccCChhHHHHH-HHHHHHHhcCC
Confidence 6777778888764 3478999999999999999999999988 8999999999999985432111 1111112221
Q ss_pred --CC--cEEeeccCCCChhHHHHHhccchH
Q 006555 300 --GD--PIAISAETGLGMTELYEALRPSVE 325 (640)
Q Consensus 300 --~~--~i~iSA~~g~gi~eL~~~I~~~l~ 325 (640)
.. ++..|+..+.|+++|...|.+.+.
T Consensus 168 ~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 168 PPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred CCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 12 688999999999999999887664
No 33
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.86 E-value=2e-20 Score=178.02 Aligned_cols=161 Identities=45% Similarity=0.699 Sum_probs=123.3
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccc-cCCchhhHHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKN 435 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~-~~~~~~~~~~~~~~~ 435 (640)
+++|+++|.+|+|||||+|+|++.......+.+++|++.....+..++..+.+|||||+.+... ....+.+.......+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 5799999999999999999999887777888999999988888888999999999999876521 223344554566677
Q ss_pred HhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEe
Q 006555 436 LMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFT 505 (640)
Q Consensus 436 i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~i 505 (640)
+..+|++++|+|++++ .....++|+++++||+|+.+..+ ...+. +...+.+.+....+.+++++
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDS--KTMKE----FKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccH--HHHHH----HHHHHHhhcccccCCceEEE
Confidence 8899999999999775 22335899999999999976521 11111 22233334444446789999
Q ss_pred ccccCCCHHHHHHHHHHH
Q 006555 506 SALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 506 SAk~g~gv~~l~~~i~~~ 523 (640)
||+++.|++++++.+.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999988764
No 34
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.9e-21 Score=179.69 Aligned_cols=158 Identities=22% Similarity=0.255 Sum_probs=126.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCcee--ecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREAL--VYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAG 228 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~--v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~ 228 (640)
..||+|+|..|||||||+-|+..+.+.. .+. +..-.....+..++ .++.||||+|++ ++..
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~T-----IGaaF~tktv~~~~~~ikfeIWDTAGQE----------Ry~s 69 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPT-----IGAAFLTKTVTVDDNTIKFEIWDTAGQE----------RYHS 69 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccccccc-----cccEEEEEEEEeCCcEEEEEEEEcCCcc----------cccc
Confidence 3699999999999999999999876533 222 33334444445555 788999999999 6777
Q ss_pred HHHHHHhccceEEEEeecCCCCChhh-HHHHHHHHHh-CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEee
Q 006555 229 MTANVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 306 (640)
Q Consensus 229 ~~~~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~L~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iS 306 (640)
+...|+++|+++|+|+|+++..++.. .++++.|++. .++.-+.||+||+|+...+.+..++....+...|+ .++++|
T Consensus 70 lapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gl-l~~ETS 148 (200)
T KOG0092|consen 70 LAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGL-LFFETS 148 (200)
T ss_pred cccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCC-EEEEEe
Confidence 88899999999999999998777765 3355555553 33455678999999999888888888888888888 889999
Q ss_pred ccCCCChhHHHHHhccchHH
Q 006555 307 AETGLGMTELYEALRPSVED 326 (640)
Q Consensus 307 A~~g~gi~eL~~~I~~~l~~ 326 (640)
|++|.|+++++..|.+.++.
T Consensus 149 AKTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 149 AKTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred cccccCHHHHHHHHHHhccC
Confidence 99999999999999988865
No 35
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.85 E-value=1.6e-20 Score=177.38 Aligned_cols=157 Identities=17% Similarity=0.140 Sum_probs=109.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEEC-CeeEEEEeCCCCccccCccchHHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG-DLRFKVLDSAGLETEATSGSILDRTAGMTANV 233 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 233 (640)
.|+++|++|||||||+|+|++............++|.+.......+. +..+.+|||||+. ++......+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~----------~~~~~~~~~ 71 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE----------KFIKNMLAG 71 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH----------HHHHHHHhh
Confidence 58999999999999999999754322222111226777777777776 7899999999986 454556677
Q ss_pred HhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCcc--chHHHHHHHHhc--CCCCcEEeeccC
Q 006555 234 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTG--SLAGAAAESLML--GFGDPIAISAET 309 (640)
Q Consensus 234 ~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~--g~~~~i~iSA~~ 309 (640)
+..+|++++|+|++++...+..+....++.. ..+|+++|+||+|+...... ...+....+... ...+++++||++
T Consensus 72 ~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (164)
T cd04171 72 AGGIDLVLLVVAADEGIMPQTREHLEILELL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVT 150 (164)
T ss_pred hhcCCEEEEEEECCCCccHhHHHHHHHHHHh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCC
Confidence 8899999999999876555544444444443 23499999999999753210 011222222222 123789999999
Q ss_pred CCChhHHHHHhcc
Q 006555 310 GLGMTELYEALRP 322 (640)
Q Consensus 310 g~gi~eL~~~I~~ 322 (640)
|.|++++++.+..
T Consensus 151 ~~~v~~l~~~l~~ 163 (164)
T cd04171 151 GEGIEELKEYLDE 163 (164)
T ss_pred CcCHHHHHHHHhh
Confidence 9999999988753
No 36
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.3e-20 Score=173.58 Aligned_cols=160 Identities=19% Similarity=0.225 Sum_probs=134.3
Q ss_pred cCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHH
Q 006555 151 NLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAG 228 (640)
Q Consensus 151 ~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~ 228 (640)
...++++++|++|||||+|+.+++.+++.-+.+ .+...+.....+.+++ .++++|||+|++ .+..
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd---~TiGvefg~r~~~id~k~IKlqiwDtaGqe----------~frs 70 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD---LTIGVEFGARMVTIDGKQIKLQIWDTAGQE----------SFRS 70 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCcccccc---ceeeeeeceeEEEEcCceEEEEEEecCCcH----------HHHH
Confidence 346799999999999999999999988754444 2367778788888876 478999999998 7788
Q ss_pred HHHHHHhccceEEEEeecCCCCChhhHHHHHHHHH---h-CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEE
Q 006555 229 MTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRK---H-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 304 (640)
Q Consensus 229 ~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~---~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~ 304 (640)
.+.+|++.|..+|+|+|++...++.. +..||.+ . .++..++|++||+|+...+++..++....+.+.|+ ..++
T Consensus 71 v~~syYr~a~GalLVydit~r~sF~h--L~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgL-ifmE 147 (216)
T KOG0098|consen 71 VTRSYYRGAAGALLVYDITRRESFNH--LTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGL-IFME 147 (216)
T ss_pred HHHHHhccCcceEEEEEccchhhHHH--HHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCc-eeeh
Confidence 89999999999999999998888774 4455544 3 46889999999999999999999999999999998 7789
Q ss_pred eeccCCCChhHHHHHhccchHH
Q 006555 305 ISAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 305 iSA~~g~gi~eL~~~I~~~l~~ 326 (640)
+||++++|++|.|..+...+-+
T Consensus 148 TSakt~~~VEEaF~nta~~Iy~ 169 (216)
T KOG0098|consen 148 TSAKTAENVEEAFINTAKEIYR 169 (216)
T ss_pred hhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999877665544
No 37
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.85 E-value=2.1e-20 Score=181.77 Aligned_cols=160 Identities=18% Similarity=0.192 Sum_probs=123.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHH
Q 006555 152 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGM 229 (640)
Q Consensus 152 ~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 229 (640)
...+|+++|..+||||||++++....... ... .+.+.+.....+..++ ..+.+|||+|+. ++..+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~--~~~-~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~----------~~~~l 71 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTES--PYG-YNMGIDYKTTTILLDGRRVKLQLWDTSGQG----------RFCTI 71 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC--CCC-CcceeEEEEEEEEECCEEEEEEEEeCCCcH----------HHHHH
Confidence 34699999999999999999999765421 111 1245555555566666 578999999997 56567
Q ss_pred HHHHHhccceEEEEeecCCCCChhhHH-HHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeecc
Q 006555 230 TANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 230 ~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~ 308 (640)
...+++.||++|+|+|++++.+.++.. +.+.+.+..++.|+|+|+||+|+.....+..++....+...+. .++++||+
T Consensus 72 ~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~-~~~e~SAk 150 (189)
T cd04121 72 FRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGM-TFFEVSPL 150 (189)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCC-EEEEecCC
Confidence 778899999999999999988877632 4444444456899999999999987655556666666777776 78999999
Q ss_pred CCCChhHHHHHhccchH
Q 006555 309 TGLGMTELYEALRPSVE 325 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~l~ 325 (640)
+|.||+++|+.|.+.+.
T Consensus 151 ~g~~V~~~F~~l~~~i~ 167 (189)
T cd04121 151 CNFNITESFTELARIVL 167 (189)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987654
No 38
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=2.6e-20 Score=176.98 Aligned_cols=158 Identities=18% Similarity=0.191 Sum_probs=116.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 230 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 230 (640)
.++|+++|.+|||||||++++.+....... ..+.+.+.....+.+++ ..+.+|||||+. ++....
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~ 69 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQ---GNTIGVDFTMKTLEIEGKRVKLQIWDTAGQE----------RFRTIT 69 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccC---CCccceEEEEEEEEECCEEEEEEEEECCChH----------HHHHHH
Confidence 469999999999999999999876543221 11133455555566666 478999999986 555667
Q ss_pred HHHHhccceEEEEeecCCCCChhh-HHHHHHHHHh-CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeecc
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~L~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~ 308 (640)
..+++.+|++++|+|++++.+.+. ..+...+... ..+.|+++|+||+|+..................+...++++||+
T Consensus 70 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 149 (165)
T cd01864 70 QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAK 149 (165)
T ss_pred HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECC
Confidence 778899999999999998766554 2233333332 34789999999999987655444555555666666578999999
Q ss_pred CCCChhHHHHHhccc
Q 006555 309 TGLGMTELYEALRPS 323 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~ 323 (640)
+|.|++++++.+.+.
T Consensus 150 ~~~~v~~~~~~l~~~ 164 (165)
T cd01864 150 ESQNVEEAFLLMATE 164 (165)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999988753
No 39
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.85 E-value=3.2e-20 Score=182.23 Aligned_cols=158 Identities=21% Similarity=0.242 Sum_probs=119.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
.|+++|.+|||||||+++++...... ... .+++.+.....+.+++ ..+.+|||+|++ ++..+...
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~--~~~-~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe----------~~~~l~~~ 68 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCE--ACK-SGVGVDFKIKTVELRGKKIRLQIWDTAGQE----------RFNSITSA 68 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCC--cCC-CcceeEEEEEEEEECCEEEEEEEEeCCCch----------hhHHHHHH
Confidence 69999999999999999999876532 111 1245566666677766 678999999998 66677788
Q ss_pred HHhccceEEEEeecCCCCChhhH-HHHHHHHHh-CCCCcEEEEecCCCCCcCCccchHHHHHHHHhc-CCCCcEEeeccC
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLML-GFGDPIAISAET 309 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~-g~~~~i~iSA~~ 309 (640)
+++.||++++|+|++++.+.++. .+.+.++.. ..+.|+++|+||+|+...+.+...+....+... +. .++++||++
T Consensus 69 y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~-~~~etSAkt 147 (202)
T cd04120 69 YYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGM-RFCEASAKD 147 (202)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCC-EEEEecCCC
Confidence 99999999999999998777753 233444443 347899999999999765555444444444443 44 689999999
Q ss_pred CCChhHHHHHhccchHH
Q 006555 310 GLGMTELYEALRPSVED 326 (640)
Q Consensus 310 g~gi~eL~~~I~~~l~~ 326 (640)
|.||+++|+.+.+.+.+
T Consensus 148 g~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 148 NFNVDEIFLKLVDDILK 164 (202)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999876643
No 40
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.85 E-value=3.7e-20 Score=176.02 Aligned_cols=156 Identities=21% Similarity=0.286 Sum_probs=112.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|.+|||||||+|+|++.+..... .+. ++.+.....+..++ ..+.+|||||+. ++.....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~~~l~Dt~g~~----------~~~~~~~ 68 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAF-VST--VGIDFKVKTVFRNDKRVKLQIWDTAGQE----------RYRTITT 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCc--eeeEEEEEEEEECCEEEEEEEEECCChH----------HHHHHHH
Confidence 58999999999999999999987653221 121 33333333333333 579999999987 4555667
Q ss_pred HHHhccceEEEEeecCCCCChhhHHHHHHHHH---hC-CCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeec
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRK---HA-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 307 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~---~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA 307 (640)
.+++.+|++++|+|++++.+.+ ++.+|+.. .. .+.|+++|+||+|+.+......+........+++ +++++||
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 145 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFN--AVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGF-EFFEASA 145 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCC-EEEEEEC
Confidence 7899999999999998765544 33344433 22 4689999999999977654444444445556676 6899999
Q ss_pred cCCCChhHHHHHhccchH
Q 006555 308 ETGLGMTELYEALRPSVE 325 (640)
Q Consensus 308 ~~g~gi~eL~~~I~~~l~ 325 (640)
++|.|++++++.+.+.+.
T Consensus 146 ~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 146 KENINVKQVFERLVDIIC 163 (165)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999887653
No 41
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=2e-20 Score=207.04 Aligned_cols=171 Identities=25% Similarity=0.346 Sum_probs=128.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHH-HH
Q 006555 152 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAG-MT 230 (640)
Q Consensus 152 ~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~-~~ 230 (640)
..++|+++|+||||||||+|+|++.....++..++ +|+|.....+.+++..+.+|||||+..........+.+.. .+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~g--tT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAG--TTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCC--ccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHH
Confidence 35799999999999999999999988777888888 9999988888889999999999998633221111112222 23
Q ss_pred HHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccc-h-HHHHHHHHhcCCCCcEEeecc
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS-L-AGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~-~-~~~~~~~~~~g~~~~i~iSA~ 308 (640)
..+++.||++++|+|++++.+..+..++..+... ++|+|+|+||+|+....... . .+....+....+.+++++||+
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~--~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk 365 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEA--GRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAK 365 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECC
Confidence 4568999999999999999998887777766654 78999999999997532111 0 111112223344578999999
Q ss_pred CCCChhHHHHHhccchHH
Q 006555 309 TGLGMTELYEALRPSVED 326 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~l~~ 326 (640)
+|.|++++++.+...++.
T Consensus 366 ~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 366 TGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999877653
No 42
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.84 E-value=2e-20 Score=183.76 Aligned_cols=147 Identities=22% Similarity=0.290 Sum_probs=104.2
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECC--eEEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
++|+++|..|||||||++++.... +.....+.++.+.....+.+++ ..+.||||||+.++ . ..+..+
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~-f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~---------~-~l~~~y 69 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDT-FCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERF---------N-SITSAY 69 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCC-CCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhh---------H-HHHHHH
Confidence 368999999999999999999654 3222334445566666677777 46689999996433 2 123467
Q ss_pred HhhccEEEEEecccHH----------HHH----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCC-CCCC
Q 006555 436 LMRAHVVALVLDAEEV----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ-VTGI 500 (640)
Q Consensus 436 i~~advvllVvDa~~~----------~~~----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~ 500 (640)
+++||++|+|+|+++. ..+ ..+.|+|+|+||+|+...+.. ..+..+.++. ..+.
T Consensus 70 ~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v-----------~~~~~~~~a~~~~~~ 138 (202)
T cd04120 70 YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREI-----------SRQQGEKFAQQITGM 138 (202)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccccc-----------CHHHHHHHHHhcCCC
Confidence 8899999999999986 111 246899999999999754221 1111111111 1246
Q ss_pred cEEEeccccCCCHHHHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
+++++||++|.||+++|+++++.+.+
T Consensus 139 ~~~etSAktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 139 RFCEASAKDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999987654
No 43
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.84 E-value=5.3e-20 Score=173.69 Aligned_cols=155 Identities=17% Similarity=0.230 Sum_probs=116.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
+|+++|++|||||||+|+|++..... ...+. ++.+.....+..++ .++.+|||||.. ++......
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~l~~~D~~G~~----------~~~~~~~~ 68 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN-QYQAT--IGIDFLSKTMYLEDKTVRLQLWDTAGQE----------RFRSLIPS 68 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc-cCCCc--eeeeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHHH
Confidence 79999999999999999999887643 23343 77777777777766 468999999986 55566777
Q ss_pred HHhccceEEEEeecCCCCChhhH-HHHHHHHH-hCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCC
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRK-HAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 310 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g 310 (640)
++..+|++++|+|.+++.+.++. .+...+.. ...+.|+++|+||+|+.........+........+. .++++||++|
T Consensus 69 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 147 (161)
T cd01861 69 YIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNA-MFIETSAKAG 147 (161)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCC-EEEEEeCCCC
Confidence 89999999999999987666542 23333322 223589999999999965444444444444555565 6899999999
Q ss_pred CChhHHHHHhccc
Q 006555 311 LGMTELYEALRPS 323 (640)
Q Consensus 311 ~gi~eL~~~I~~~ 323 (640)
.|++++++.|.+.
T Consensus 148 ~~v~~l~~~i~~~ 160 (161)
T cd01861 148 HNVKELFRKIASA 160 (161)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998754
No 44
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.84 E-value=3e-20 Score=175.66 Aligned_cols=155 Identities=19% Similarity=0.211 Sum_probs=112.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
++|+++|.+|||||||++++++.... ..... ++.+.....+..++ ..+.+|||||++ ++.....
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKYDP--TIEDSYRKQIEVDGQQCMLEILDTAGTE----------QFTAMRD 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCC--chhhhEEEEEEECCEEEEEEEEECCCcc----------ccchHHH
Confidence 58999999999999999999976542 22222 44455555566666 457789999987 4445566
Q ss_pred HHHhccceEEEEeecCCCCChhhH-HHHHHHHHh--CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeecc
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~ 308 (640)
.+++.+|++++|+|++++.+.++. .+.+.+.+. ..+.|+++|+||+|+.........+........+. +++++||+
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 146 (163)
T cd04136 68 LYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGC-PFYETSAK 146 (163)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCC-eEEEecCC
Confidence 788999999999999987665542 233444432 34789999999999976544333333334445553 78999999
Q ss_pred CCCChhHHHHHhccc
Q 006555 309 TGLGMTELYEALRPS 323 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~ 323 (640)
+|.|++++++.+.+.
T Consensus 147 ~~~~v~~l~~~l~~~ 161 (163)
T cd04136 147 SKINVDEVFADLVRQ 161 (163)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998754
No 45
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.84 E-value=4.6e-20 Score=174.33 Aligned_cols=154 Identities=21% Similarity=0.236 Sum_probs=113.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEEC----CeeEEEEeCCCCccccCccchHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG----DLRFKVLDSAGLETEATSGSILDRTAGMT 230 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 230 (640)
+|+++|.+|||||||+|++++...... ..+ +.+.+.....+.+. ..++.+|||||+. ++....
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~ 68 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKD-YKK--TIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE----------EFDAIT 68 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC-CCC--cEEEEEEEEEEEEcCCCCEEEEEEeeCCchH----------HHHHhH
Confidence 799999999999999999998654221 122 24455444444444 4679999999986 555666
Q ss_pred HHHHhccceEEEEeecCCCCChhhH-HHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccC
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 309 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~ 309 (640)
..+++.+|++++|+|++++.+.++. .+...+.....+.|+++|+||+|+..+.....++.......+++ +++++||++
T Consensus 69 ~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~ 147 (162)
T cd04106 69 KAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQL-PLFRTSVKD 147 (162)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCC-eEEEEECCC
Confidence 7789999999999999886655532 22333333456899999999999987655444555555666777 789999999
Q ss_pred CCChhHHHHHhcc
Q 006555 310 GLGMTELYEALRP 322 (640)
Q Consensus 310 g~gi~eL~~~I~~ 322 (640)
|.|++++++.|..
T Consensus 148 ~~~v~~l~~~l~~ 160 (162)
T cd04106 148 DFNVTELFEYLAE 160 (162)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999998864
No 46
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.84 E-value=6.7e-20 Score=180.30 Aligned_cols=160 Identities=21% Similarity=0.204 Sum_probs=118.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEEC---CeeEEEEeCCCCccccCccchHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG---DLRFKVLDSAGLETEATSGSILDRTAGMT 230 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 230 (640)
++|+++|.+|||||||+++|++....... .+ +++.+.....+.+. ...+.+|||||.+ ++..+.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~-~~--t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~----------~~~~~~ 67 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHY-KA--TIGVDFALKVIEWDPNTVVRLQLWDIAGQE----------RFGGMT 67 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCC-CC--ceeEEEEEEEEEECCCCEEEEEEEECCCch----------hhhhhH
Confidence 48999999999999999999987542211 12 24445555555555 3578999999996 455666
Q ss_pred HHHHhccceEEEEeecCCCCChhhHH-HHHHHHHh-----CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEE
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 304 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~L~~~-----~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~ 304 (640)
..+++++|++++|+|++++.+.+... +...+... ..+.|+++|+||+|+........++....+...++..+++
T Consensus 68 ~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e 147 (201)
T cd04107 68 RVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFE 147 (201)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEE
Confidence 78899999999999999877666422 22333221 2478999999999997544444555566666777557899
Q ss_pred eeccCCCChhHHHHHhccchHH
Q 006555 305 ISAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 305 iSA~~g~gi~eL~~~I~~~l~~ 326 (640)
+||++|.|++++++.|.+.+.+
T Consensus 148 ~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 148 TSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887654
No 47
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.84 E-value=5.1e-20 Score=175.04 Aligned_cols=157 Identities=18% Similarity=0.241 Sum_probs=115.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
++|+++|.+|||||||++++++...... ..+. .+.+.....+..++ .++.+|||||+. ++.....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~-~~~t--~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~ 69 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTES-YIST--IGVDFKIRTIELDGKTIKLQIWDTAGQE----------RFRTITS 69 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCc--cceeEEEEEEEECCEEEEEEEEECCCcH----------hHHHHHH
Confidence 5899999999999999999998765332 1222 44455555555555 478999999987 5556667
Q ss_pred HHHhccceEEEEeecCCCCChhhH-HHHHHHHHhC-CCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccC
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHA-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 309 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~ 309 (640)
.+++.+|++++|+|++++.+..+. ++...+.... ++.|+++|+||+|+.........+........+. +++++||++
T Consensus 70 ~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (166)
T cd01869 70 SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGI-PFLETSAKN 148 (166)
T ss_pred HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCC-eEEEEECCC
Confidence 788999999999999986555532 2233333332 4689999999999876555444445555556666 789999999
Q ss_pred CCChhHHHHHhccch
Q 006555 310 GLGMTELYEALRPSV 324 (640)
Q Consensus 310 g~gi~eL~~~I~~~l 324 (640)
|.|++++++.|.+.+
T Consensus 149 ~~~v~~~~~~i~~~~ 163 (166)
T cd01869 149 ATNVEQAFMTMAREI 163 (166)
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999988654
No 48
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.84 E-value=5.5e-20 Score=174.51 Aligned_cols=155 Identities=24% Similarity=0.316 Sum_probs=114.3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 230 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 230 (640)
..+|+++|.+|||||||+|++++....... .+. ++.+.....+..++ ..+.+|||||+. ++....
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~ 69 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDS-KST--IGVEFATRSIQIDGKTIKAQIWDTAGQE----------RYRAIT 69 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCc--cceEEEEEEEEECCEEEEEEEEeCCChH----------HHHHHH
Confidence 468999999999999999999987653322 232 45555556666666 468999999987 455566
Q ss_pred HHHHhccceEEEEeecCCCCChhhHHHHHHHH---HhC-CCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEee
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLR---KHA-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 306 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~---~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iS 306 (640)
..++..++++++|+|++++.+..+ +.+|+. +.. .+.|+++|+||+|+........++........+. .++++|
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S 146 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFEN--VERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGL-SFIETS 146 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCC-EEEEEE
Confidence 778899999999999997666553 334443 333 2589999999999976554444444444445554 689999
Q ss_pred ccCCCChhHHHHHhccc
Q 006555 307 AETGLGMTELYEALRPS 323 (640)
Q Consensus 307 A~~g~gi~eL~~~I~~~ 323 (640)
|++|.|++++++.+...
T Consensus 147 a~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 147 ALDGTNVEEAFKQLLTE 163 (165)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999988754
No 49
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.84 E-value=5.7e-20 Score=182.79 Aligned_cols=158 Identities=20% Similarity=0.213 Sum_probs=117.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC---eeEEEEeCCCCccccCccchHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD---LRFKVLDSAGLETEATSGSILDRTAGMT 230 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~ 230 (640)
.+|+++|++|||||||+|+|++....... .+ +++.+.....+.+.+ ..+.||||||+. .+....
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~-~~--T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~----------~~~~l~ 67 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSY-KQ--TIGLDFFSKRVTLPGNLNVTLQVWDIGGQS----------IGGKML 67 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCC-CC--ceeEEEEEEEEEeCCCCEEEEEEEECCCcH----------HHHHHH
Confidence 37999999999999999999987543211 22 255676666666643 578999999986 444566
Q ss_pred HHHHhccceEEEEeecCCCCChhhH-HHHHHHHHhC----CCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEe
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHA----PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 305 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~~----~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~i 305 (640)
..+++.+|++|+|+|++++.+.++. ++.+.+.+.. .+.|+++|+||+|+........+.........+. ..+++
T Consensus 68 ~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~~i 146 (215)
T cd04109 68 DKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGM-ESCLV 146 (215)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEE
Confidence 7789999999999999987666643 2444444432 2457899999999976555444444555556665 68999
Q ss_pred eccCCCChhHHHHHhccchH
Q 006555 306 SAETGLGMTELYEALRPSVE 325 (640)
Q Consensus 306 SA~~g~gi~eL~~~I~~~l~ 325 (640)
||++|.|++++++.|...+.
T Consensus 147 SAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 147 SAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999987664
No 50
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.84 E-value=3.8e-20 Score=175.96 Aligned_cols=154 Identities=21% Similarity=0.238 Sum_probs=109.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEE--CCeeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|.+|||||||++++++....... .+ +........+.. ....+.+|||||+. ++..+..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~-~~---t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESY-IP---TIEDTYRQVISCSKNICTLQITDTTGSH----------QFPAMQR 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCc-CC---cchheEEEEEEECCEEEEEEEEECCCCC----------cchHHHH
Confidence 48999999999999999999987642211 11 111222222222 34578999999997 3445556
Q ss_pred HHHhccceEEEEeecCCCCChhh-HHHHHHHHHh----CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEee
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 306 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~L~~~----~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iS 306 (640)
.++..+|++++|+|++++.+.++ ..+.+.++.. .++.|+++|+||+|+.........+........+. .++++|
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~S 146 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNC-AFMETS 146 (165)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCC-cEEEee
Confidence 67889999999999998777654 3344555543 14789999999999976444434444444445555 679999
Q ss_pred ccCCCChhHHHHHhcc
Q 006555 307 AETGLGMTELYEALRP 322 (640)
Q Consensus 307 A~~g~gi~eL~~~I~~ 322 (640)
|++|.|++++++.|.+
T Consensus 147 A~~g~~v~~~f~~l~~ 162 (165)
T cd04140 147 AKTNHNVQELFQELLN 162 (165)
T ss_pred cCCCCCHHHHHHHHHh
Confidence 9999999999999874
No 51
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.84 E-value=7.5e-20 Score=174.04 Aligned_cols=155 Identities=18% Similarity=0.256 Sum_probs=114.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|.+|||||||++++++.... ...+. ++..+.....+..++ .++.+|||||+. ++.....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~--~~~~~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 69 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPH-TIGVEFGTRIIEVNGQKIKLQIWDTAGQE----------RFRAVTR 69 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCCc-ccceeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHH
Confidence 58999999999999999999987542 22221 123333333445554 468999999987 5556667
Q ss_pred HHHhccceEEEEeecCCCCChhhHHHHHHHHH---h-CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeec
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRK---H-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 307 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~---~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA 307 (640)
.+++.+|++++|+|++++.+.+. +.+|+.. . .++.|+++|+||+|+........++....+...+. .++++||
T Consensus 70 ~~~~~~~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa 146 (166)
T cd04122 70 SYYRGAAGALMVYDITRRSTYNH--LSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGL-LFLECSA 146 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCC-EEEEEEC
Confidence 88999999999999998766553 3344433 2 34689999999999987665555555555666665 7899999
Q ss_pred cCCCChhHHHHHhccch
Q 006555 308 ETGLGMTELYEALRPSV 324 (640)
Q Consensus 308 ~~g~gi~eL~~~I~~~l 324 (640)
++|.|+++++..+...+
T Consensus 147 ~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 147 KTGENVEDAFLETAKKI 163 (166)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999998887644
No 52
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.84 E-value=7.8e-20 Score=172.96 Aligned_cols=156 Identities=18% Similarity=0.182 Sum_probs=112.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|.+|||||||++++++... +..... ++.+.......+++ ..+.+|||||+. ++..+..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 68 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF--VTDYDP--TIEDSYTKQCEIDGQWAILDILDTAGQE----------EFSAMRE 68 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--CcccCC--CccceEEEEEEECCEEEEEEEEECCCCc----------chhHHHH
Confidence 5899999999999999999998654 233333 44454454555655 468899999987 4445566
Q ss_pred HHHhccceEEEEeecCCCCChhhH-HHHHHHHHh--CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeecc
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~ 308 (640)
.++..+|++++|+|++++.+..+. ++...+... ..+.|+++|+||+|+..................+. +++++||+
T Consensus 69 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 147 (164)
T cd04145 69 QYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKI-PYIETSAK 147 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCC-cEEEeeCC
Confidence 788999999999999986655432 222223222 24789999999999976544444444445555666 78999999
Q ss_pred CCCChhHHHHHhccch
Q 006555 309 TGLGMTELYEALRPSV 324 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~l 324 (640)
+|.|++++++.|.+.+
T Consensus 148 ~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 148 DRLNVDKAFHDLVRVI 163 (164)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 9999999999987643
No 53
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.84 E-value=6.5e-20 Score=178.77 Aligned_cols=157 Identities=19% Similarity=0.217 Sum_probs=114.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCe--eEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
+|+++|.+|||||||+++|+...... ..+. ++.+.....+..++. .+.+|||||.. ++......
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~--~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~ 66 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE--TYDP--TIEDSYRKQVVVDGQPCMLEVLDTAGQE----------EYTALRDQ 66 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--cCCC--chHhhEEEEEEECCEEEEEEEEECCCch----------hhHHHHHH
Confidence 58999999999999999999765432 2222 333444444555554 58899999987 45556667
Q ss_pred HHhccceEEEEeecCCCCChhh-HHHHHHHHHh----CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeec
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 307 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~-~~~~~~L~~~----~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA 307 (640)
++..+|++++|+|+++..+.++ ..+.+.+... ..+.|+++|+||+|+.........+........+. .++++||
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA 145 (190)
T cd04144 67 WIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGC-EFIEASA 145 (190)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCC-EEEEecC
Confidence 8999999999999998766654 2233334332 24689999999999976554444444444555665 6899999
Q ss_pred cCCCChhHHHHHhccchHH
Q 006555 308 ETGLGMTELYEALRPSVED 326 (640)
Q Consensus 308 ~~g~gi~eL~~~I~~~l~~ 326 (640)
++|.|++++++.+.+.+.+
T Consensus 146 k~~~~v~~l~~~l~~~l~~ 164 (190)
T cd04144 146 KTNVNVERAFYTLVRALRQ 164 (190)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999876654
No 54
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.84 E-value=8.8e-20 Score=174.05 Aligned_cols=156 Identities=19% Similarity=0.260 Sum_probs=115.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 230 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 230 (640)
.++|+++|.+|||||||++++++.+........ .+.+.....+..++ ..+.+|||||.. ++....
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t---~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~ 70 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT---IGVEFGARMITIDGKQIKLQIWDTAGQE----------SFRSIT 70 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc---cceeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHH
Confidence 469999999999999999999987653332221 34444444445544 578999999976 555667
Q ss_pred HHHHhccceEEEEeecCCCCChhhHHHHHHHHHh----CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEee
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 306 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~----~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iS 306 (640)
..+++.+|++++|+|++++.+..+ +..|+... .++.|+++|+||+|+........+.....+...+. .++++|
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~S 147 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNH--LTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGL-IFMETS 147 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEe
Confidence 788899999999999997655553 34455332 35789999999999986544444444455556666 789999
Q ss_pred ccCCCChhHHHHHhccch
Q 006555 307 AETGLGMTELYEALRPSV 324 (640)
Q Consensus 307 A~~g~gi~eL~~~I~~~l 324 (640)
|++|.|++++++.+.+.+
T Consensus 148 a~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 148 AKTASNVEEAFINTAKEI 165 (168)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999887655
No 55
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.84 E-value=7.3e-20 Score=173.88 Aligned_cols=156 Identities=23% Similarity=0.301 Sum_probs=113.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEEC---CeeEEEEeCCCCccccCccchHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG---DLRFKVLDSAGLETEATSGSILDRTAGMT 230 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 230 (640)
|.|+|+|++|||||||+|+|++...... ..++ +|.+.....+... +..+.+|||||+. .+....
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~-~~~~--~t~~~~~~~~~~~~~~~~~~~iiDtpG~~----------~~~~~~ 67 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAG-EAGG--ITQHIGAFEVPAEVLKIPGITFIDTPGHE----------AFTNMR 67 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccc-cCCC--eEEeeccEEEecccCCcceEEEEeCCCcH----------HHHHHH
Confidence 5799999999999999999998765432 2233 6766665566654 6789999999986 344455
Q ss_pred HHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHh-----cC-CCCcEE
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLM-----LG-FGDPIA 304 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~-----~g-~~~~i~ 304 (640)
...+..+|++++|+|++++......+...+++.. ++|+++|+||+|+................. .+ ..++++
T Consensus 68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (168)
T cd01887 68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKAA--NVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVP 145 (168)
T ss_pred HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHc--CCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEE
Confidence 6678899999999999987766666666666654 789999999999875432111111111111 11 126799
Q ss_pred eeccCCCChhHHHHHhccch
Q 006555 305 ISAETGLGMTELYEALRPSV 324 (640)
Q Consensus 305 iSA~~g~gi~eL~~~I~~~l 324 (640)
+||++|.|++++++.|.+..
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 146 TSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred eecccCCCHHHHHHHHHHhh
Confidence 99999999999999987654
No 56
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.84 E-value=8.2e-20 Score=176.03 Aligned_cols=159 Identities=20% Similarity=0.205 Sum_probs=114.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEEC------------CeeEEEEeCCCCccccCcc
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG------------DLRFKVLDSAGLETEATSG 220 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~------------~~~~~liDTpG~~~~~~~~ 220 (640)
..+|+++|.+|||||||++++++...... ..+ +++.+.....+.+. ...+.+|||||+.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------ 74 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPK-FIT--TVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE------ 74 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcc-CCC--ccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH------
Confidence 46899999999999999999998654211 111 13334433333332 2679999999987
Q ss_pred chHHHHHHHHHHHHhccceEEEEeecCCCCChhhH-HHHHHHHHh--CCCCcEEEEecCCCCCcCCccchHHHHHHHHhc
Q 006555 221 SILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLML 297 (640)
Q Consensus 221 ~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~ 297 (640)
++......+++++|++++|+|++++.+..+. .+...+... .++.|+++|+||+|+.+.......+....+...
T Consensus 75 ----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~ 150 (180)
T cd04127 75 ----RFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKY 150 (180)
T ss_pred ----HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHc
Confidence 5556677889999999999999976655542 223333332 246799999999999875554445555556667
Q ss_pred CCCCcEEeeccCCCChhHHHHHhccchH
Q 006555 298 GFGDPIAISAETGLGMTELYEALRPSVE 325 (640)
Q Consensus 298 g~~~~i~iSA~~g~gi~eL~~~I~~~l~ 325 (640)
+. +++++||++|.|++++++.|.+.+-
T Consensus 151 ~~-~~~e~Sak~~~~v~~l~~~l~~~~~ 177 (180)
T cd04127 151 GI-PYFETSAATGTNVEKAVERLLDLVM 177 (180)
T ss_pred CC-eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 76 7899999999999999999986553
No 57
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=5.1e-20 Score=197.37 Aligned_cols=171 Identities=25% Similarity=0.298 Sum_probs=123.7
Q ss_pred ccccCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC-eeEEEEeCCCCccccCccchHHHH
Q 006555 148 IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD-LRFKVLDSAGLETEATSGSILDRT 226 (640)
Q Consensus 148 ~~~~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~ 226 (640)
++...+..|+|||+||||||||+|+|++.+. +++++|+ ||+....+.+...+ .++.++||||+......+..+.
T Consensus 154 lelk~iadValVG~PNaGKSTLln~Lt~~k~-~vs~~p~--TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg-- 228 (390)
T PRK12298 154 LELKLLADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPF--TTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLG-- 228 (390)
T ss_pred EeeeccccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCC--CccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHH--
Confidence 3455567899999999999999999998774 7788887 99999999998875 5699999999986543322221
Q ss_pred HHHHHHHHhccceEEEEeecCC---CCChhh-HHHHHHHHHhC---CCCcEEEEecCCCCCcCCccchHHHHHH-HHhcC
Q 006555 227 AGMTANVLAKTQFAIFMIDVRS---GLHPLD-LEVGKWLRKHA---PQIKPIVAMNKCESLHNGTGSLAGAAAE-SLMLG 298 (640)
Q Consensus 227 ~~~~~~~~~~ad~vl~VvD~s~---~~~~~~-~~~~~~L~~~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~~~~g 298 (640)
.....+++++|++++|+|++. ....++ ..+.+.+.... .++|.++|+||+|+..... ..+.... ....+
T Consensus 229 -~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e--l~~~l~~l~~~~~ 305 (390)
T PRK12298 229 -IRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE--AEERAKAIVEALG 305 (390)
T ss_pred -HHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH--HHHHHHHHHHHhC
Confidence 223457899999999999873 222222 33444454432 3689999999999875422 1122222 23334
Q ss_pred CC-CcEEeeccCCCChhHHHHHhccchHH
Q 006555 299 FG-DPIAISAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 299 ~~-~~i~iSA~~g~gi~eL~~~I~~~l~~ 326 (640)
.. .++++||+++.|+++|++.|.+.+++
T Consensus 306 ~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 306 WEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred CCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 32 68999999999999999999887754
No 58
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.84 E-value=9.4e-20 Score=173.63 Aligned_cols=158 Identities=19% Similarity=0.277 Sum_probs=114.0
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 230 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 230 (640)
..+|+++|.+|||||||++++++....... .+. .+.+.....+...+ ..+.+|||||+. ++....
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~-~~t--~~~~~~~~~~~~~~~~~~l~l~D~~g~~----------~~~~~~ 69 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSF-IST--IGIDFKIRTIELDGKKIKLQIWDTAGQE----------RFRTIT 69 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCccc-ccC--ccceEEEEEEEECCEEEEEEEEeCCchH----------HHHHHH
Confidence 469999999999999999999987643211 222 33344444555555 478999999987 444556
Q ss_pred HHHHhccceEEEEeecCCCCChhhH-HHHHHHHHh-CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeecc
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~ 308 (640)
..++++||++++|+|++++.+..+. ++...+... ..+.|+++|+||+|+.+......++....+...+. +++++||+
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 148 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGI-KFLETSAK 148 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeCC
Confidence 6788999999999999887665542 223333332 24689999999999986554444444445555666 68999999
Q ss_pred CCCChhHHHHHhccch
Q 006555 309 TGLGMTELYEALRPSV 324 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~l 324 (640)
+|.|++++++.+.+.+
T Consensus 149 ~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 149 ANINVEEAFFTLAKDI 164 (167)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999988765
No 59
>PRK15494 era GTPase Era; Provisional
Probab=99.84 E-value=4.9e-20 Score=195.10 Aligned_cols=159 Identities=23% Similarity=0.285 Sum_probs=118.6
Q ss_pred cCCceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 355 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 355 ~~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
.+.++|+++|+||||||||+|+|++.....+++.+++|++...+.+..++.++.+|||||+.+.... ........+..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~--l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGS--LEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCccc--HHHHHHHHHHH
Confidence 3457999999999999999999999888888999999999888888899999999999998644211 22222334456
Q ss_pred HHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEE
Q 006555 435 NLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVF 504 (640)
Q Consensus 435 ~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~ 504 (640)
++..||++|+|+|+++. .....+.|.|+|+||+|+.+. .. ..+.+ .+... ....++++
T Consensus 128 ~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~~----~~~~~----~l~~~---~~~~~i~~ 195 (339)
T PRK15494 128 SLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-YL----NDIKA----FLTEN---HPDSLLFP 195 (339)
T ss_pred HhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-cH----HHHHH----HHHhc---CCCcEEEE
Confidence 78899999999998753 112346788999999998643 11 11111 11111 12357999
Q ss_pred eccccCCCHHHHHHHHHHHHHHH
Q 006555 505 TSALEGRGRIAVMHQVIDTYQKW 527 (640)
Q Consensus 505 iSAk~g~gv~~l~~~i~~~~~~~ 527 (640)
+||++|.|++++++.+.....+.
T Consensus 196 iSAktg~gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 196 ISALSGKNIDGLLEYITSKAKIS 218 (339)
T ss_pred EeccCccCHHHHHHHHHHhCCCC
Confidence 99999999999999998876543
No 60
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.84 E-value=3.7e-20 Score=202.92 Aligned_cols=155 Identities=27% Similarity=0.397 Sum_probs=127.0
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 436 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 436 (640)
..+|+++|+||||||||+|+|+|. +..++++||+|++..++.+.+.+.++.++|+||.+........| .-+++++
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~-~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE----~Var~~l 77 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGA-NQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDE----KVARDFL 77 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhcc-CceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchH----HHHHHHH
Confidence 357999999999999999999987 48899999999999999999999999999999998774332222 2234555
Q ss_pred h--hccEEEEEecccHH--------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEec
Q 006555 437 M--RAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTS 506 (640)
Q Consensus 437 ~--~advvllVvDa~~~--------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iS 506 (640)
. ++|+++.|+|+++. +..+.++|+|+++|++|..++.....+.+++.+ ..++|++++|
T Consensus 78 l~~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~------------~LGvPVv~tv 145 (653)
T COG0370 78 LEGKPDLIVNVVDATNLERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSK------------LLGVPVVPTV 145 (653)
T ss_pred hcCCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHH------------HhCCCEEEEE
Confidence 4 58999999999986 667889999999999999877654444444432 2389999999
Q ss_pred cccCCCHHHHHHHHHHHHHHHh
Q 006555 507 ALEGRGRIAVMHQVIDTYQKWC 528 (640)
Q Consensus 507 Ak~g~gv~~l~~~i~~~~~~~~ 528 (640)
|++|.|++++.+++.+..++..
T Consensus 146 A~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 146 AKRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred eecCCCHHHHHHHHHHhccccc
Confidence 9999999999999987665443
No 61
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.84 E-value=8.8e-20 Score=178.91 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=112.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
+|+|+|.+|||||||++++++....... .|. ++.+.....+.+++ ..+.+|||||+..... ....++......
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~-~pt--~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~--~~~~e~~~~~~~ 76 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEY-IPT--EHRRLYRPAVVLSGRVYDLHILDVPNMQRYPG--TAGQEWMDPRFR 76 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCccc-CCc--cccccceeEEEECCEEEEEEEEeCCCcccCCc--cchhHHHHHHHh
Confidence 7999999999999999999987654332 232 44454444556666 4688999999863221 111122333456
Q ss_pred HHhccceEEEEeecCCCCChhhH-HHHHHHHHh----CCCCcEEEEecCCCCCcCCccchHHHHHHHH-hcCCCCcEEee
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESL-MLGFGDPIAIS 306 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~----~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~-~~g~~~~i~iS 306 (640)
++..+|++++|+|++++.+.+.. .+.+.+... ..+.|+++|+||+|+...+....+.....+. ..+. +++++|
T Consensus 77 ~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~e~S 155 (198)
T cd04142 77 GLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKC-GYLECS 155 (198)
T ss_pred hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCC-cEEEec
Confidence 68899999999999987666542 233444332 2578999999999997654433333322222 3344 689999
Q ss_pred ccCCCChhHHHHHhccch
Q 006555 307 AETGLGMTELYEALRPSV 324 (640)
Q Consensus 307 A~~g~gi~eL~~~I~~~l 324 (640)
|++|.|++++++.+...+
T Consensus 156 ak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 156 AKYNWHILLLFKELLISA 173 (198)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999888654
No 62
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.83 E-value=1.7e-19 Score=171.52 Aligned_cols=166 Identities=23% Similarity=0.395 Sum_probs=121.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHH-HHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTA-GMTA 231 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~-~~~~ 231 (640)
.++|+++|.+|+|||||+|+|++.......+.++ +|++........++..+.+|||||+..........+.+. ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAG--TTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCC--CccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 3589999999999999999999987666666666 888887777888888999999999975432222222221 2334
Q ss_pred HHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHH-Hhc---CCCCcEEeec
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAES-LML---GFGDPIAISA 307 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~-~~~---g~~~~i~iSA 307 (640)
.++..+|++++|+|++++.+..+..+...+... ++|+++|+||+|+............... ..+ +..+++++||
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLRIAGLILEE--GKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA 157 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc--CCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEec
Confidence 567899999999999998887766666665544 7899999999999865321122111122 122 2347899999
Q ss_pred cCCCChhHHHHHhcc
Q 006555 308 ETGLGMTELYEALRP 322 (640)
Q Consensus 308 ~~g~gi~eL~~~I~~ 322 (640)
++|.|++++++.+..
T Consensus 158 ~~~~~i~~~~~~l~~ 172 (174)
T cd01895 158 LTGQGVDKLFDAIDE 172 (174)
T ss_pred cCCCCHHHHHHHHHH
Confidence 999999999998764
No 63
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.83 E-value=7.5e-20 Score=174.29 Aligned_cols=162 Identities=24% Similarity=0.215 Sum_probs=112.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCe-eEEEEeCCCCccccCccchHHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL-RFKVLDSAGLETEATSGSILDRTAGMTANV 233 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 233 (640)
.|+++|++|||||||+|+|++... .++..++ +|++...+.+...+. ++.+|||||+........ .........
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~--~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~---~~~~~~~~~ 75 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPF--TTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGK---GLGHRFLRH 75 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCc--cccCCcceEEEcCCCCeEEEEecCcccCcccccC---CchHHHHHH
Confidence 589999999999999999998654 4556666 677777777777776 999999999863322111 112233445
Q ss_pred HhccceEEEEeecCCC-CChhh-HHHHHHHHHhC---CCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeecc
Q 006555 234 LAKTQFAIFMIDVRSG-LHPLD-LEVGKWLRKHA---PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 234 ~~~ad~vl~VvD~s~~-~~~~~-~~~~~~L~~~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~ 308 (640)
+..+|++++|+|++++ .+..+ ..+.+.+.... .++|+++|+||+|+.+..... .............+++++||+
T Consensus 76 ~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~ 154 (170)
T cd01898 76 IERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELF-ELLKELLKELWGKPVFPISAL 154 (170)
T ss_pred HHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhH-HHHHHHHhhCCCCCEEEEecC
Confidence 6789999999999986 34443 23444444432 368999999999987644321 111222222223368999999
Q ss_pred CCCChhHHHHHhccc
Q 006555 309 TGLGMTELYEALRPS 323 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~ 323 (640)
+|.|++++++.|.+.
T Consensus 155 ~~~gi~~l~~~i~~~ 169 (170)
T cd01898 155 TGEGLDELLRKLAEL 169 (170)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999988754
No 64
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.83 E-value=1.1e-19 Score=177.31 Aligned_cols=160 Identities=18% Similarity=0.194 Sum_probs=114.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|.+|||||||++++++.........+. ++.+.....+.+++ ..+.||||||+. ++.....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 68 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIAT--VGIDFRNKVVTVDGVKVKLQIWDTAGQE----------RFRSVTH 68 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCc--ccceeEEEEEEECCEEEEEEEEeCCCcH----------HHHHhhH
Confidence 379999999999999999999876432111221 33344333445554 578999999986 5555667
Q ss_pred HHHhccceEEEEeecCCCCChhh-HHHHHHHHHhC-CCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccC
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHA-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 309 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~L~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~ 309 (640)
.++..+|++++|+|+++..+.++ ..+...+.+.. .+.|+++|+||+|+..+......+........+. +++++||++
T Consensus 69 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~-~~~e~Sa~~ 147 (191)
T cd04112 69 AYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGV-PFMETSAKT 147 (191)
T ss_pred HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 78899999999999998665553 22334444433 3689999999999976544433444444555665 789999999
Q ss_pred CCChhHHHHHhccchHH
Q 006555 310 GLGMTELYEALRPSVED 326 (640)
Q Consensus 310 g~gi~eL~~~I~~~l~~ 326 (640)
|.|++++++.|.+.+.+
T Consensus 148 ~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 148 GLNVELAFTAVAKELKH 164 (191)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887754
No 65
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.83 E-value=7.3e-20 Score=192.38 Aligned_cols=169 Identities=27% Similarity=0.328 Sum_probs=122.7
Q ss_pred cccccCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC-eeEEEEeCCCCccccCccchHHH
Q 006555 147 KIDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD-LRFKVLDSAGLETEATSGSILDR 225 (640)
Q Consensus 147 ~~~~~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~ 225 (640)
.++...++.|+|||+||||||||+|+|++.+. .++++++ ||++...+.+.+.+ .++.+|||||+.+.......
T Consensus 151 ~lelk~~adV~lvG~pnaGKSTLl~~lt~~~~-~va~y~f--TT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~g--- 224 (329)
T TIGR02729 151 RLELKLLADVGLVGLPNAGKSTLISAVSAAKP-KIADYPF--TTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAG--- 224 (329)
T ss_pred EEEeeccccEEEEcCCCCCHHHHHHHHhcCCc-cccCCCC--CccCCEEEEEEeCCceEEEEEeCCCcccCCccccc---
Confidence 34556678999999999999999999998763 4667776 89999999988877 89999999999865443221
Q ss_pred HHHHHHHHHhccceEEEEeecCCC---CChhhH-HHHHHHHHh---CCCCcEEEEecCCCCCcCCccchHHHHHH-HHhc
Q 006555 226 TAGMTANVLAKTQFAIFMIDVRSG---LHPLDL-EVGKWLRKH---APQIKPIVAMNKCESLHNGTGSLAGAAAE-SLML 297 (640)
Q Consensus 226 ~~~~~~~~~~~ad~vl~VvD~s~~---~~~~~~-~~~~~L~~~---~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~~~~ 297 (640)
.......+++++|++++|+|+++. ...++. .+.+.|... ..++|+++|+||+|+..... ..+.... ...+
T Consensus 225 Lg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~--~~~~~~~l~~~~ 302 (329)
T TIGR02729 225 LGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE--LAELLKELKKAL 302 (329)
T ss_pred HHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH--HHHHHHHHHHHc
Confidence 223345678899999999999865 222332 233444433 23789999999999976422 2222222 2234
Q ss_pred CCCCcEEeeccCCCChhHHHHHhccch
Q 006555 298 GFGDPIAISAETGLGMTELYEALRPSV 324 (640)
Q Consensus 298 g~~~~i~iSA~~g~gi~eL~~~I~~~l 324 (640)
+. +++++||++++|++++++.|.+.+
T Consensus 303 ~~-~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 303 GK-PVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred CC-cEEEEEccCCcCHHHHHHHHHHHh
Confidence 54 789999999999999999987654
No 66
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.1e-20 Score=175.82 Aligned_cols=147 Identities=19% Similarity=0.221 Sum_probs=107.4
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECC--eEEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
.+||+++|..|||||||+-++.... +.....+.+........+..++ .++.||||+|+.+++ . .+..
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~-F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~------s----lapM 73 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQ-FHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYH------S----LAPM 73 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCc-cccccccccccEEEEEEEEeCCcEEEEEEEEcCCccccc------c----cccc
Confidence 5899999999999999999999654 3332233344445555666666 577899999987763 1 1235
Q ss_pred HHhhccEEEEEecccHH-------HH---H-H---cCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 435 NLMRAHVVALVLDAEEV-------RA---V-E---EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 435 ~i~~advvllVvDa~~~-------~~---~-~---~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
|+++|+++|+|||+++. .+ + + .++-+.||+||+||...+ ++..+.++.++...+.
T Consensus 74 YyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R-----------~V~~~ea~~yAe~~gl 142 (200)
T KOG0092|consen 74 YYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERR-----------EVEFEEAQAYAESQGL 142 (200)
T ss_pred eecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcc-----------cccHHHHHHHHHhcCC
Confidence 78899999999999986 11 1 1 234466799999998742 3334444455555688
Q ss_pred cEEEeccccCCCHHHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDTYQ 525 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~~~ 525 (640)
.++++|||+|.|++++|..|.+.+.
T Consensus 143 l~~ETSAKTg~Nv~~if~~Ia~~lp 167 (200)
T KOG0092|consen 143 LFFETSAKTGENVNEIFQAIAEKLP 167 (200)
T ss_pred EEEEEecccccCHHHHHHHHHHhcc
Confidence 9999999999999999999988653
No 67
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.83 E-value=1.9e-20 Score=184.48 Aligned_cols=162 Identities=25% Similarity=0.302 Sum_probs=114.6
Q ss_pred cCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCe-eEEEEeCCCCccccCccchHHHHHHH
Q 006555 151 NLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL-RFKVLDSAGLETEATSGSILDRTAGM 229 (640)
Q Consensus 151 ~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~ 229 (640)
+..++|+|+|++|||||||+|+|++... .+.+.++ +|.+.....+...+. .+.+|||||+....+. ..... ...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~-~~~~~~~--~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-~~~~~-~~~ 113 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADV-YAEDQLF--ATLDPTTRRLRLPDGREVLLTDTVGFIRDLPH-QLVEA-FRS 113 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchh-ccCCccc--eeccceeEEEEecCCceEEEeCCCccccCCCH-HHHHH-HHH
Confidence 5568999999999999999999999753 2333444 666666666666664 8999999999643221 12122 233
Q ss_pred HHHHHhccceEEEEeecCCCCChhhH-HHHHHHHHhC-CCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeec
Q 006555 230 TANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHA-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 307 (640)
Q Consensus 230 ~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA 307 (640)
....+..+|++++|+|++++.+..+. .+.++++... .++|+++|+||+|+...... ..... ....+++++||
T Consensus 114 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~-~~~~~~~~~Sa 187 (204)
T cd01878 114 TLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLE-AGRPDAVFISA 187 (204)
T ss_pred HHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhh-cCCCceEEEEc
Confidence 44567899999999999987766543 3445555432 36899999999999764321 12222 23347899999
Q ss_pred cCCCChhHHHHHhccc
Q 006555 308 ETGLGMTELYEALRPS 323 (640)
Q Consensus 308 ~~g~gi~eL~~~I~~~ 323 (640)
++|.|++++++.|...
T Consensus 188 ~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 188 KTGEGLDELLEAIEEL 203 (204)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999988754
No 68
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.83 E-value=1.2e-19 Score=173.91 Aligned_cols=157 Identities=15% Similarity=0.134 Sum_probs=118.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|.+|||||||++++.+...... ... +..+.....+.+++ ..+.+|||||.. ++..+..
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~--~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~l~~ 68 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDY--HDP--TIEDAYKQQARIDNEPALLDILDTAGQA----------EFTAMRD 68 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCC--cCC--cccceEEEEEEECCEEEEEEEEeCCCch----------hhHHHhH
Confidence 4899999999999999999998765321 111 33334444455666 568999999997 5556677
Q ss_pred HHHhccceEEEEeecCCCCChhhHH-HHHHHHHh--CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeecc
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~L~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~ 308 (640)
.++..+|++++|+|++++.+.++.. +.+++... .++.|+++|+||+|+........++....+...+. +++++||+
T Consensus 69 ~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sa~ 147 (172)
T cd04141 69 QYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNC-PFFETSAA 147 (172)
T ss_pred HHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCC-EEEEEecC
Confidence 7899999999999999988877633 34445442 34789999999999976655555555555566676 78999999
Q ss_pred CCCChhHHHHHhccchH
Q 006555 309 TGLGMTELYEALRPSVE 325 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~l~ 325 (640)
+|.||+++++.+...+.
T Consensus 148 ~~~~v~~~f~~l~~~~~ 164 (172)
T cd04141 148 LRHYIDDAFHGLVREIR 164 (172)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987554
No 69
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.83 E-value=1.5e-19 Score=171.43 Aligned_cols=156 Identities=22% Similarity=0.238 Sum_probs=112.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
+|+++|.+|||||||+|+|++.+... ...+ +++.+.....+...+ ..+.+|||||.. ++..+...
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~ 68 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-KYLP--TIGIDYGVKKVSVRNKEVRVNFFDLSGHP----------EYLEVRNE 68 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCC--ccceeEEEEEEEECCeEEEEEEEECCccH----------HHHHHHHH
Confidence 79999999999999999999876432 1122 244454444555544 578899999987 45556677
Q ss_pred HHhccceEEEEeecCCCCChhhH-HHHHHHHHhC------CCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEe
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHA------PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 305 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~~------~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~i 305 (640)
++..+|++++|+|.+++.+.++. .+...+.+.. .+.|+++|+||+|+..+.....++........+. +++++
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~ 147 (168)
T cd04119 69 FYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGF-KYFET 147 (168)
T ss_pred HhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCC-eEEEE
Confidence 88999999999999987555432 2333333322 3689999999999975444334444445555665 68999
Q ss_pred eccCCCChhHHHHHhccch
Q 006555 306 SAETGLGMTELYEALRPSV 324 (640)
Q Consensus 306 SA~~g~gi~eL~~~I~~~l 324 (640)
||++|.|++++++.|.+.+
T Consensus 148 Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 148 SACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999999987654
No 70
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.83 E-value=9.5e-20 Score=172.81 Aligned_cols=156 Identities=17% Similarity=0.215 Sum_probs=112.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCe--eEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
++|+++|.+|||||||+++++.... +...+. ++.+.....+..++. .+.+|||||+. ++..+..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF--VEKYDP--TIEDSYRKQVEVDGQQCMLEILDTAGTE----------QFTAMRD 67 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC--CcccCC--cchheEEEEEEECCEEEEEEEEECCCcc----------cchhHHH
Confidence 4899999999999999999996543 222332 455544555666654 56799999997 4445667
Q ss_pred HHHhccceEEEEeecCCCCChhhH-HHHHHHHHh--CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeecc
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~ 308 (640)
.+++.+|++++|+|.++..+.++. ++...+... ..+.|+++|+||+|+.................++. +++++||+
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 146 (164)
T cd04175 68 LYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGC-AFLETSAK 146 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCC-EEEEeeCC
Confidence 789999999999999876665542 233333321 35789999999999976544333333334455564 78999999
Q ss_pred CCCChhHHHHHhccch
Q 006555 309 TGLGMTELYEALRPSV 324 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~l 324 (640)
+|.|+++++++|.+.+
T Consensus 147 ~~~~v~~~~~~l~~~l 162 (164)
T cd04175 147 AKINVNEIFYDLVRQI 162 (164)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999987654
No 71
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.83 E-value=6.4e-20 Score=179.91 Aligned_cols=160 Identities=16% Similarity=0.163 Sum_probs=107.7
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|||||||++++++.+.. ....|.++.+.....+.++|. .+.||||||+.+.......+.. .....+
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~-~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~--~~~~~~ 77 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFP-EEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWM--DPRFRG 77 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCC-cccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHH--HHHHhh
Confidence 48999999999999999999976532 223444444544445667775 5679999998654212222221 123456
Q ss_pred HhhccEEEEEecccHH-----------HHH------HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCC
Q 006555 436 LMRAHVVALVLDAEEV-----------RAV------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 498 (640)
Q Consensus 436 i~~advvllVvDa~~~-----------~~~------~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 498 (640)
++.+|++|+|+|+++. ... ..++|+|+|+||+|+...+... .+ +......+..
T Consensus 78 ~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~--~~--------~~~~~~~~~~ 147 (198)
T cd04142 78 LRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAP--RH--------VLSVLVRKSW 147 (198)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccccccc--HH--------HHHHHHHHhc
Confidence 7899999999999876 011 2468999999999996542111 00 1111111123
Q ss_pred CCcEEEeccccCCCHHHHHHHHHHHHHHHhcC
Q 006555 499 GIPVVFTSALEGRGRIAVMHQVIDTYQKWCLR 530 (640)
Q Consensus 499 ~~~~v~iSAk~g~gv~~l~~~i~~~~~~~~~~ 530 (640)
+++++++||++|.|++++|+.+.+.+..+.+.
T Consensus 148 ~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 148 KCGYLECSAKYNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred CCcEEEecCCCCCCHHHHHHHHHHHhhccCCC
Confidence 67999999999999999999999876655443
No 72
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.83 E-value=8.5e-20 Score=172.94 Aligned_cols=157 Identities=15% Similarity=0.185 Sum_probs=112.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|.+|||||||+|++++..... .... ++.+........++ ..+.+|||||+. ++.....
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~g~~----------~~~~~~~ 66 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVD--DYDP--TIEDSYRKQIEIDGEVCLLDILDTAGQE----------EFSAMRD 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc--ccCC--chhhhEEEEEEECCEEEEEEEEECCCcc----------cchHHHH
Confidence 379999999999999999999875432 2222 44455445555555 468899999987 3445556
Q ss_pred HHHhccceEEEEeecCCCCChhhH-HHHHHHHHh--CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeecc
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~ 308 (640)
.++..+|++++|+|++++.+.++. .+...+.+. ..+.|+++|+||+|+........+.........+. +++++||+
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 145 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGC-PFLETSAK 145 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCC-EEEEeecC
Confidence 778999999999999986655542 223333332 23689999999999976544333444444455554 78999999
Q ss_pred CCCChhHHHHHhccchH
Q 006555 309 TGLGMTELYEALRPSVE 325 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~l~ 325 (640)
+|.|++++++.|.+.+.
T Consensus 146 ~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 146 ERVNVDEAFYDLVREIR 162 (164)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999886553
No 73
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.83 E-value=2.6e-19 Score=175.83 Aligned_cols=161 Identities=19% Similarity=0.236 Sum_probs=116.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHH
Q 006555 152 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGM 229 (640)
Q Consensus 152 ~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 229 (640)
..++|+++|.+|||||||++++++..... ....+.+.+.....+...+ ..+.||||||+. ++...
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~----------~~~~~ 71 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSG---SYITTIGVDFKIRTVEINGERVKLQIWDTAGQE----------RFRTI 71 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCC---CcCccccceeEEEEEEECCEEEEEEEEeCCCch----------hHHHH
Confidence 35799999999999999999999876421 1111133444444555555 478999999987 44556
Q ss_pred HHHHHhccceEEEEeecCCCCChhhH-HHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeecc
Q 006555 230 TANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 230 ~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~ 308 (640)
...++..+|++++|+|++++.+.++. .+++.+.......|+++|+||+|+.+.......+........+. .++++||+
T Consensus 72 ~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~ 150 (199)
T cd04110 72 TSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGI-SLFETSAK 150 (199)
T ss_pred HHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEEECC
Confidence 67788999999999999987665532 23344444455789999999999986544444444444555665 78999999
Q ss_pred CCCChhHHHHHhccchHH
Q 006555 309 TGLGMTELYEALRPSVED 326 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~l~~ 326 (640)
+|.|++++++.|...+..
T Consensus 151 ~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 151 ENINVEEMFNCITELVLR 168 (199)
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 999999999999887644
No 74
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.83 E-value=1.6e-19 Score=198.34 Aligned_cols=170 Identities=23% Similarity=0.354 Sum_probs=130.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHH-HHHH
Q 006555 152 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRT-AGMT 230 (640)
Q Consensus 152 ~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~-~~~~ 230 (640)
...+|+++|++|||||||+|+|++.....+++.++ +|++.....+..++..+.+|||||+..........+.+ ...+
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~g--tt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAG--TTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCC--ceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 34699999999999999999999988778888888 99999888888889999999999997543322222222 2345
Q ss_pred HHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHH----HHhcCCCCcEEee
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAE----SLMLGFGDPIAIS 306 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~----~~~~g~~~~i~iS 306 (640)
..+++.||++++|+|++++.+..+..+...+.+. ++|+++|+||+|+... .......... +...+..+++++|
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~--~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi~~S 325 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLRIAGLILEA--GKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPIVFIS 325 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc--CCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCceEEEe
Confidence 5688999999999999999999888777777665 7899999999999832 1111111111 2223445789999
Q ss_pred ccCCCChhHHHHHhccchHH
Q 006555 307 AETGLGMTELYEALRPSVED 326 (640)
Q Consensus 307 A~~g~gi~eL~~~I~~~l~~ 326 (640)
|++|.|++++++.+.+.+..
T Consensus 326 A~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 326 ALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999876643
No 75
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.83 E-value=1.7e-19 Score=169.90 Aligned_cols=154 Identities=20% Similarity=0.221 Sum_probs=109.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCe--eEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
++|+++|.+|||||||+|+|++..... .... ++.+.....+.+++. .+.+|||||.. ++..+..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~l~~ 67 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVD--EYDP--TIEDSYRKQVVIDGETCLLDILDTAGQE----------EYSAMRD 67 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcC--CcCC--cchheEEEEEEECCEEEEEEEEECCCCc----------chHHHHH
Confidence 489999999999999999999875422 2222 444444455556553 57889999987 4555667
Q ss_pred HHHhccceEEEEeecCCCCChhhH-HHHHHHHHh--CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeecc
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~ 308 (640)
.+++.+|++++|+|+++..+.++. .+...+.+. ..+.|+++|+||+|+... .....+........+. +++++||+
T Consensus 68 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~ 145 (162)
T cd04138 68 QYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR-TVSSRQGQDLAKSYGI-PYIETSAK 145 (162)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc-eecHHHHHHHHHHhCC-eEEEecCC
Confidence 789999999999999976555542 233333332 247899999999999763 2223333344445565 78999999
Q ss_pred CCCChhHHHHHhccc
Q 006555 309 TGLGMTELYEALRPS 323 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~ 323 (640)
+|.|++++++.+.+.
T Consensus 146 ~~~gi~~l~~~l~~~ 160 (162)
T cd04138 146 TRQGVEEAFYTLVRE 160 (162)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999988753
No 76
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.83 E-value=1.1e-19 Score=197.85 Aligned_cols=171 Identities=22% Similarity=0.248 Sum_probs=124.0
Q ss_pred ccccCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHH
Q 006555 148 IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTA 227 (640)
Q Consensus 148 ~~~~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~ 227 (640)
++......|+|||+||||||||+|+|++.+.. ++++|+ ||++...+.+...+.++.+|||||+.+....+.- ..
T Consensus 154 leLk~~adV~LVG~PNAGKSTLln~Ls~akpk-Iadypf--TTl~P~lGvv~~~~~~f~laDtPGliegas~g~g---Lg 227 (500)
T PRK12296 154 LELKSVADVGLVGFPSAGKSSLISALSAAKPK-IADYPF--TTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKG---LG 227 (500)
T ss_pred EEecccceEEEEEcCCCCHHHHHHHHhcCCcc-ccccCc--ccccceEEEEEECCeEEEEEECCCCccccchhhH---HH
Confidence 45566789999999999999999999997654 577777 9999999999999999999999999854433221 11
Q ss_pred HHHHHHHhccceEEEEeecCCCC----ChhhHH-HHHHHHHh------------CCCCcEEEEecCCCCCcCCccchHHH
Q 006555 228 GMTANVLAKTQFAIFMIDVRSGL----HPLDLE-VGKWLRKH------------APQIKPIVAMNKCESLHNGTGSLAGA 290 (640)
Q Consensus 228 ~~~~~~~~~ad~vl~VvD~s~~~----~~~~~~-~~~~L~~~------------~~~~p~ilV~NK~Dl~~~~~~~~~~~ 290 (640)
...+.+++++|++++|+|+++.. ..++.+ +.+.|... ..++|.|+|+||+|+...... .+..
T Consensus 228 ~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l 306 (500)
T PRK12296 228 LDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFV 306 (500)
T ss_pred HHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHH
Confidence 23456789999999999997521 222222 22233221 136899999999999753221 1112
Q ss_pred HHHHHhcCCCCcEEeeccCCCChhHHHHHhccchHH
Q 006555 291 AAESLMLGFGDPIAISAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 291 ~~~~~~~g~~~~i~iSA~~g~gi~eL~~~I~~~l~~ 326 (640)
...+...++ ++++|||+++.|+++|+++|.+.+.+
T Consensus 307 ~~~l~~~g~-~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 307 RPELEARGW-PVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred HHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 223334455 78999999999999999999887754
No 77
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.83 E-value=2.5e-19 Score=169.33 Aligned_cols=156 Identities=21% Similarity=0.293 Sum_probs=115.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|.+|||||||++++++..... ....+.+.+.....+...+ ..+.+|||||.. ++.....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~ 67 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSE---QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE----------RFRSITS 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC---CCCCceeeEEEEEEEEECCEEEEEEEEECCChH----------HHHHHHH
Confidence 379999999999999999999876522 2222244455555556665 578999999986 4556667
Q ss_pred HHHhccceEEEEeecCCCCChhhHHHHHHHHH---h-CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeec
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRK---H-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 307 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~---~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA 307 (640)
.++..+|++++|+|++++.+.++ +..|+.. . .++.|+++|+||+|+........+.........++ +++++||
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~--~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa 144 (164)
T smart00175 68 SYYRGAVGALLVYDITNRESFEN--LKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGL-PFFETSA 144 (164)
T ss_pred HHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCC-eEEEEeC
Confidence 78899999999999988666553 3334433 2 24789999999999876544344444445556676 6899999
Q ss_pred cCCCChhHHHHHhccchH
Q 006555 308 ETGLGMTELYEALRPSVE 325 (640)
Q Consensus 308 ~~g~gi~eL~~~I~~~l~ 325 (640)
++|.|++++++.|.+.+.
T Consensus 145 ~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 145 KTNTNVEEAFEELAREIL 162 (164)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999987654
No 78
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.83 E-value=2.2e-19 Score=193.47 Aligned_cols=168 Identities=25% Similarity=0.263 Sum_probs=122.8
Q ss_pred ccccCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEEC-CeeEEEEeCCCCccccCccchHHHH
Q 006555 148 IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG-DLRFKVLDSAGLETEATSGSILDRT 226 (640)
Q Consensus 148 ~~~~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~ 226 (640)
++...++.|+|||+||||||||+|+|++.+.. +++.|+ ||.+...+.+.+. +.++.+|||||+.+....+.. .
T Consensus 153 lelk~~adVglVG~pNaGKSTLLn~Lt~ak~k-Ia~ypf--TTl~PnlG~v~~~~~~~~~laD~PGliega~~~~g---L 226 (424)
T PRK12297 153 LELKLLADVGLVGFPNVGKSTLLSVVSNAKPK-IANYHF--TTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVG---L 226 (424)
T ss_pred EeecccCcEEEEcCCCCCHHHHHHHHHcCCCc-cccCCc--ceeceEEEEEEEeCCceEEEEECCCCcccccccch---H
Confidence 44556789999999999999999999987744 466777 9999999988887 789999999999864443221 2
Q ss_pred HHHHHHHHhccceEEEEeecCCC---CChhh-HHHHHHHHHhC---CCCcEEEEecCCCCCcCCccchHHHHHHHHhcCC
Q 006555 227 AGMTANVLAKTQFAIFMIDVRSG---LHPLD-LEVGKWLRKHA---PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF 299 (640)
Q Consensus 227 ~~~~~~~~~~ad~vl~VvD~s~~---~~~~~-~~~~~~L~~~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~ 299 (640)
......++++++++++|+|+++. ...++ ..+.+.|.... .++|.++|+||+|+... ..........++
T Consensus 227 g~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~- 301 (424)
T PRK12297 227 GHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLG- 301 (424)
T ss_pred HHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhC-
Confidence 23345667889999999999753 22232 23455555532 37899999999998432 111222233344
Q ss_pred CCcEEeeccCCCChhHHHHHhccchHH
Q 006555 300 GDPIAISAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 300 ~~~i~iSA~~g~gi~eL~~~I~~~l~~ 326 (640)
.+++++||++++|+++|++.|.+.+.+
T Consensus 302 ~~i~~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 302 PKVFPISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 378999999999999999999877643
No 79
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.83 E-value=4.1e-20 Score=163.48 Aligned_cols=160 Identities=22% Similarity=0.325 Sum_probs=134.2
Q ss_pred cCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHH
Q 006555 151 NLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAG 228 (640)
Q Consensus 151 ~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~ 228 (640)
+++++.+|+|+|+||||||+-++....+...+. .++..|....++++.| .+++||||+|++ ++..
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYi---tTiGvDfkirTv~i~G~~VkLqIwDtAGqE----------rFrt 72 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYI---TTIGVDFKIRTVDINGDRVKLQIWDTAGQE----------RFRT 72 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhcccccceE---EEeeeeEEEEEeecCCcEEEEEEeecccHH----------HHHH
Confidence 345788999999999999999998765432221 2256788888888877 579999999999 8888
Q ss_pred HHHHHHhccceEEEEeecCCCCChhhHHHHHHHHH---hCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEe
Q 006555 229 MTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRK---HAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 305 (640)
Q Consensus 229 ~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~---~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~i 305 (640)
++..+++..+++++|+|++++.++. ++.+||++ .++..|-++|+||+|..+.+.+..+++..++...|+ ..|++
T Consensus 73 itstyyrgthgv~vVYDVTn~ESF~--Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgi-e~FET 149 (198)
T KOG0079|consen 73 ITSTYYRGTHGVIVVYDVTNGESFN--NVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGI-ELFET 149 (198)
T ss_pred HHHHHccCCceEEEEEECcchhhhH--hHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCc-hheeh
Confidence 9999999999999999999988887 45566655 466789999999999999888888888888889998 89999
Q ss_pred eccCCCChhHHHHHhccchHH
Q 006555 306 SAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 306 SA~~g~gi~eL~~~I~~~l~~ 326 (640)
||+...|++..|..|.+.+..
T Consensus 150 SaKe~~NvE~mF~cit~qvl~ 170 (198)
T KOG0079|consen 150 SAKENENVEAMFHCITKQVLQ 170 (198)
T ss_pred hhhhcccchHHHHHHHHHHHH
Confidence 999999999999998876643
No 80
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.82 E-value=9.2e-20 Score=172.49 Aligned_cols=145 Identities=23% Similarity=0.277 Sum_probs=103.0
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
.+||+++|.+|||||||++++++.. .+..+.+++.+.....+.+++. .+.+|||||+.+.. .....
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~ 69 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSY--FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFS----------AMREQ 69 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCC--CCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchh----------HHHHH
Confidence 3799999999999999999999764 3455666666655555666665 57799999965432 12335
Q ss_pred HHhhccEEEEEecccHH-----------HHH----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCC
Q 006555 435 NLMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 499 (640)
Q Consensus 435 ~i~~advvllVvDa~~~-----------~~~----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 499 (640)
+++.+|++++|+|+++. ... ..+.|+++|+||+|+........ +.. .+. ....+
T Consensus 70 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~--~~~-----~~~----~~~~~ 138 (164)
T cd04145 70 YMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSR--EEG-----QEL----ARKLK 138 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecH--HHH-----HHH----HHHcC
Confidence 67889999999999875 111 13689999999999975422110 010 011 11224
Q ss_pred CcEEEeccccCCCHHHHHHHHHHHH
Q 006555 500 IPVVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 500 ~~~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
.+++++||++|.|++++|+.+.+..
T Consensus 139 ~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 139 IPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred CcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 6899999999999999999987653
No 81
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.82 E-value=4.6e-20 Score=185.50 Aligned_cols=196 Identities=23% Similarity=0.324 Sum_probs=142.0
Q ss_pred CCCCccccCCCCCCccccccchhhcCCCccccccccCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEE
Q 006555 116 ALEDTHVEPEPDGVVEDHKVKPLYEKPVDFTKIDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIRE 195 (640)
Q Consensus 116 g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~ 195 (640)
|...+.+++..+.+ ..+.+.+.++++++.++.+ .|+|+|.|+||||||||++++++.+. .+.++| |||+....
T Consensus 135 GR~aSiik~i~~~L---~fL~~~r~~l~~LP~Idp~-~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YP--FTTK~i~v 207 (346)
T COG1084 135 GRVASIIKKIDDDL---EFLRKARDHLKKLPAIDPD-LPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYP--FTTKGIHV 207 (346)
T ss_pred HHHHHHHHHhhHHH---HHHHHHHHHHhcCCCCCCC-CCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCC--ccccceeE
Confidence 33333444444444 6677778888888888766 57999999999999999999999764 334455 49999999
Q ss_pred EEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHHHh-ccceEEEEeecCCCCCh--hh-HHHHHHHHHhCCCCcEE
Q 006555 196 GLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLA-KTQFAIFMIDVRSGLHP--LD-LEVGKWLRKHAPQIKPI 271 (640)
Q Consensus 196 ~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~-~ad~vl~VvD~s~~~~~--~~-~~~~~~L~~~~~~~p~i 271 (640)
++...++.++++|||||+.+...+ .+++...++..+++ -+++|+|++|.+..+.. ++ ..+++.++..+. .|++
T Consensus 208 Ghfe~~~~R~QvIDTPGlLDRPl~--ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v 284 (346)
T COG1084 208 GHFERGYLRIQVIDTPGLLDRPLE--ERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIV 284 (346)
T ss_pred eeeecCCceEEEecCCcccCCChH--HhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeE
Confidence 999999999999999999854332 22234344444444 45789999999875544 32 335555555554 8999
Q ss_pred EEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCChhHHHHHhccc
Q 006555 272 VAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPS 323 (640)
Q Consensus 272 lV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~gi~eL~~~I~~~ 323 (640)
+|+||+|...... .++........|...+..+|+..+.+++.+.+.+...
T Consensus 285 ~V~nK~D~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 285 VVINKIDIADEEK--LEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred EEEecccccchhH--HHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHH
Confidence 9999999885432 2333344556666567899999999999888877665
No 82
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.82 E-value=1.4e-19 Score=176.02 Aligned_cols=148 Identities=20% Similarity=0.190 Sum_probs=104.9
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHH
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 433 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 433 (640)
..+||+++|.++||||||+.++.+... .....+..+.+.....+.+++. .+.+|||||+.+. .. ...
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~---------~~-l~~ 73 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGST-ESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRF---------CT-IFR 73 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHH---------HH-HHH
Confidence 358999999999999999999996532 2222234455655556667774 6679999996433 21 234
Q ss_pred HHHhhccEEEEEecccHH-----------HH--HHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 434 KNLMRAHVVALVLDAEEV-----------RA--VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 434 ~~i~~advvllVvDa~~~-----------~~--~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
.+++++|++|+|+|+++. +. ...+.|+|||+||+|+.+... +..+..+.+++..+.
T Consensus 74 ~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~-----------v~~~~~~~~a~~~~~ 142 (189)
T cd04121 74 SYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQ-----------VATEQAQAYAERNGM 142 (189)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccC-----------CCHHHHHHHHHHcCC
Confidence 567899999999999976 11 124789999999999965422 111222222233467
Q ss_pred cEEEeccccCCCHHHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDTYQ 525 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~~~ 525 (640)
+++++||++|.||+++|+++.+.+.
T Consensus 143 ~~~e~SAk~g~~V~~~F~~l~~~i~ 167 (189)
T cd04121 143 TFFEVSPLCNFNITESFTELARIVL 167 (189)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999987654
No 83
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.82 E-value=1.6e-19 Score=173.82 Aligned_cols=155 Identities=21% Similarity=0.269 Sum_probs=106.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceee--------cC------CCCCceeeeeEEEEEEE-----CCeeEEEEeCCCCcc
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALV--------YN------TPDDHVTRDIREGLAKL-----GDLRFKVLDSAGLET 215 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v--------~~------~~~~~tT~~~~~~~~~~-----~~~~~~liDTpG~~~ 215 (640)
.|+++|.+|||||||+++|++...++. .+ ..| +|.........+ .+..+.+|||||+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g--~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~- 78 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERG--ITIKAQTVRLNYKAKDGQEYLLNLIDTPGHV- 78 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCC--CeEecceEEEEEecCCCCcEEEEEEECCCCh-
Confidence 599999999999999999997432211 01 112 333332222222 45678999999997
Q ss_pred ccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHH
Q 006555 216 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESL 295 (640)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~ 295 (640)
++...+..++..+|++++|+|++++.+..+.+....+.. .++|+++|+||+|+...... ........
T Consensus 79 ---------~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~--~~~~~~~~ 145 (179)
T cd01890 79 ---------DFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE--NNLEIIPVINKIDLPSADPE--RVKQQIED 145 (179)
T ss_pred ---------hhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH--cCCCEEEEEECCCCCcCCHH--HHHHHHHH
Confidence 455666778999999999999998777665544443333 37899999999998653211 11112223
Q ss_pred hcCC--CCcEEeeccCCCChhHHHHHhccchH
Q 006555 296 MLGF--GDPIAISAETGLGMTELYEALRPSVE 325 (640)
Q Consensus 296 ~~g~--~~~i~iSA~~g~gi~eL~~~I~~~l~ 325 (640)
.+++ ..++++||++|.|+++|++.+.+.++
T Consensus 146 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 146 VLGLDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred HhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 3344 25799999999999999999987653
No 84
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.82 E-value=1.7e-19 Score=173.45 Aligned_cols=155 Identities=14% Similarity=0.103 Sum_probs=110.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|.+|||||||+++++..... ..... +..+.....+..++ .++.+|||+|++ ++.....
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~--~~~~p--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVP--TVFDNYAVTVMIGGEPYTLGLFDTAGQE----------DYDRLRP 67 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCC--ceeeeeEEEEEECCEEEEEEEEECCCcc----------chhhhhh
Confidence 48999999999999999999986542 22221 33333333455566 578899999997 3444555
Q ss_pred HHHhccceEEEEeecCCCCChhhH--HHHHHHHHhCCCCcEEEEecCCCCCcCC------------ccchHHHHHHHHhc
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNG------------TGSLAGAAAESLML 297 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~L~~~~~~~p~ilV~NK~Dl~~~~------------~~~~~~~~~~~~~~ 297 (640)
.+++.+|++++|+|++++.+.++. .+...++...++.|+++|+||+|+.... .+..++........
T Consensus 68 ~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~ 147 (175)
T cd01874 68 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDL 147 (175)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHh
Confidence 688999999999999988777653 2444454445678999999999986531 12223333344455
Q ss_pred CCCCcEEeeccCCCChhHHHHHhcc
Q 006555 298 GFGDPIAISAETGLGMTELYEALRP 322 (640)
Q Consensus 298 g~~~~i~iSA~~g~gi~eL~~~I~~ 322 (640)
+...++++||++|.|++++++.+..
T Consensus 148 ~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 148 KAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHH
Confidence 5447899999999999999998765
No 85
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.82 E-value=3.2e-19 Score=166.96 Aligned_cols=154 Identities=33% Similarity=0.468 Sum_probs=119.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 233 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 233 (640)
.+|+++|.+|+|||||+|++++...+.+...++ +|.+.......+.+.++.+|||||+..... .............
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~~~~~~~~~~~ 77 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAG--TTRDVIEESIDIGGIPVRLIDTAGIRETED--EIEKIGIERAREA 77 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCC--CccceEEEEEEeCCEEEEEEECCCcCCCcc--hHHHHHHHHHHHH
Confidence 379999999999999999999988777777776 888888888888888999999999874432 1111223445567
Q ss_pred HhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCCh
Q 006555 234 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 313 (640)
Q Consensus 234 ~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~gi 313 (640)
+.++|++++|+|++++.+..+...... ..++|+++|+||+|+...... .......+++++||+++.|+
T Consensus 78 ~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~vi~v~nK~D~~~~~~~--------~~~~~~~~~~~~Sa~~~~~v 145 (157)
T cd04164 78 IEEADLVLFVIDASRGLDEEDLEILEL----PADKPIIVVLNKSDLLPDSEL--------LSLLAGKPIIAISAKTGEGL 145 (157)
T ss_pred HhhCCEEEEEEECCCCCCHHHHHHHHh----hcCCCEEEEEEchhcCCcccc--------ccccCCCceEEEECCCCCCH
Confidence 889999999999998777776554433 347899999999999864331 12222237899999999999
Q ss_pred hHHHHHhccc
Q 006555 314 TELYEALRPS 323 (640)
Q Consensus 314 ~eL~~~I~~~ 323 (640)
+++++.|.+.
T Consensus 146 ~~l~~~l~~~ 155 (157)
T cd04164 146 DELKEALLEL 155 (157)
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 86
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.82 E-value=3.8e-19 Score=168.55 Aligned_cols=153 Identities=20% Similarity=0.272 Sum_probs=113.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
+|+++|.+|||||||++++++.... ..+.++.+.+.....+...+ ..+.+|||||.. ++......
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~----------~~~~~~~~ 68 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFH---SSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE----------RYQTITKQ 68 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC---CCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcH----------hHHhhHHH
Confidence 7999999999999999999987652 12222244555555566665 468899999987 45556677
Q ss_pred HHhccceEEEEeecCCCCChhhHHHHHHHH---HhC-CCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeecc
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLR---KHA-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~---~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~ 308 (640)
++..+|++++|+|+++..+.++ +.+|+. ... .+.|+++|+||+|+........++........+. +++++||+
T Consensus 69 ~~~~~~~~i~v~d~~~~~sf~~--~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~ 145 (161)
T cd04117 69 YYRRAQGIFLVYDISSERSYQH--IMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGM-DFFETSAC 145 (161)
T ss_pred HhcCCcEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeCC
Confidence 8899999999999998766654 334443 332 3689999999999977665544555555555664 68999999
Q ss_pred CCCChhHHHHHhccc
Q 006555 309 TGLGMTELYEALRPS 323 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~ 323 (640)
+|.|++++++.|.+.
T Consensus 146 ~~~~v~~~f~~l~~~ 160 (161)
T cd04117 146 TNSNIKESFTRLTEL 160 (161)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999988753
No 87
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=4.2e-20 Score=170.27 Aligned_cols=148 Identities=20% Similarity=0.173 Sum_probs=117.9
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
.+|++++|+.+||||+|+-+++... +.........++.....+.++++ +++||||+|+..+. .-+..
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~kr-F~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~fr----------sv~~s 74 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKR-FQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFR----------SVTRS 74 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccC-ccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHH----------HHHHH
Confidence 4799999999999999999999664 44444455666777777777776 56799999965432 34668
Q ss_pred HHhhccEEEEEecccHH--------------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 435 NLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 435 ~i~~advvllVvDa~~~--------------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
+++.|-++|||||.+.. +...++.-++|++||+||... +.+..+..+.|+...+.
T Consensus 75 yYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r-----------R~Vs~EEGeaFA~ehgL 143 (216)
T KOG0098|consen 75 YYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEAR-----------REVSKEEGEAFAREHGL 143 (216)
T ss_pred HhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcc-----------ccccHHHHHHHHHHcCc
Confidence 89999999999999976 112357889999999999876 45667777788888899
Q ss_pred cEEEeccccCCCHHHHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
.++++||++++||+|+|......+..
T Consensus 144 ifmETSakt~~~VEEaF~nta~~Iy~ 169 (216)
T KOG0098|consen 144 IFMETSAKTAENVEEAFINTAKEIYR 169 (216)
T ss_pred eeehhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999887765443
No 88
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.82 E-value=3.1e-19 Score=168.68 Aligned_cols=154 Identities=21% Similarity=0.274 Sum_probs=114.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|.+|||||||+++|++....... .+. .+.+.....+..++ ..+.+|||||+. ++.....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~l~l~D~~G~~----------~~~~~~~ 67 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDS-QHT--IGVEFGSKIIRVGGKRVKLQIWDTAGQE----------RFRSVTR 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCc--eeeeEEEEEEEECCEEEEEEEEECcchH----------HHHHhHH
Confidence 37999999999999999999987643221 111 33344444445544 578999999987 4555667
Q ss_pred HHHhccceEEEEeecCCCCChhhHHHHHHHH---Hh-CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeec
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLR---KH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 307 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~---~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA 307 (640)
.+++.+|++++|+|++++.+..+ +.+|+. .. .++.|+++|+||+|+.........+........+. .++++||
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 144 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEA--LPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGL-LFLETSA 144 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCC-EEEEEEC
Confidence 78899999999999998766654 333433 22 35789999999999987555555555666667775 7999999
Q ss_pred cCCCChhHHHHHhccc
Q 006555 308 ETGLGMTELYEALRPS 323 (640)
Q Consensus 308 ~~g~gi~eL~~~I~~~ 323 (640)
++|.|++++++.+.+.
T Consensus 145 ~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 145 LTGENVEEAFLKCARS 160 (161)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999988753
No 89
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.82 E-value=2.7e-19 Score=169.53 Aligned_cols=154 Identities=21% Similarity=0.201 Sum_probs=108.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
+|+++|.+|||||||++++++....... .+. ...+........++ ..+.+|||||++ ++..+...
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~ 68 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQ-LST--YALTLYKHNAKFEGKTILVDFWDTAGQE----------RFQTMHAS 68 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc-CCc--eeeEEEEEEEEECCEEEEEEEEeCCCch----------hhhhhhHH
Confidence 7999999999999999999986542211 111 22233333334443 468899999987 55566778
Q ss_pred HHhccceEEEEeecCCCCChhh-HHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCC
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGL 311 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~-~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~ 311 (640)
+++.+|++++|+|++++.+..+ ..+...+++..++.|+++|+||+|+.... ..+........+. +++++||++|.
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~~~-~~~~~Sa~~~~ 144 (161)
T cd04124 69 YYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV---TQKKFNFAEKHNL-PLYYVSAADGT 144 (161)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH---HHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 8999999999999998766654 23445555545579999999999985321 1122222333444 68999999999
Q ss_pred ChhHHHHHhccchH
Q 006555 312 GMTELYEALRPSVE 325 (640)
Q Consensus 312 gi~eL~~~I~~~l~ 325 (640)
|++++++.+.+.+.
T Consensus 145 gv~~l~~~l~~~~~ 158 (161)
T cd04124 145 NVVKLFQDAIKLAV 158 (161)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999886553
No 90
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=2.5e-19 Score=197.11 Aligned_cols=171 Identities=23% Similarity=0.360 Sum_probs=131.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHH-HHHH
Q 006555 152 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRT-AGMT 230 (640)
Q Consensus 152 ~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~-~~~~ 230 (640)
..++|+++|++|||||||+|+|++.....+++.+| +|++.....+..++..+.+|||||+..........+.+ ...+
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~g--tt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAG--TTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCC--ceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 35799999999999999999999988888888888 99999888888899999999999987544332222222 2345
Q ss_pred HHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccc-h-HHHHHHHHhcCCCCcEEeecc
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS-L-AGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~-~-~~~~~~~~~~g~~~~i~iSA~ 308 (640)
..++..+|++|+|+|++++.+..+..+...+.+. ++|+++|+||+|+....... . ......+...+..+++++||+
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~--~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~ 327 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLRIAGLALEA--GRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISAL 327 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc--CCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCC
Confidence 5688999999999999999999888887777665 78999999999997432110 0 011111222334578999999
Q ss_pred CCCChhHHHHHhccchHH
Q 006555 309 TGLGMTELYEALRPSVED 326 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~l~~ 326 (640)
+|.|++++++.+.+...+
T Consensus 328 ~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 328 TGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999998876543
No 91
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.82 E-value=2.1e-19 Score=170.00 Aligned_cols=157 Identities=22% Similarity=0.249 Sum_probs=111.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|.+|||||||+|+|++...... ..+. ...+.....+.+++ ..+.+|||||.. ++.....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t--~~~~~~~~~v~~~~~~~~~~i~D~~G~~----------~~~~~~~ 68 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSEN-QEST--IGAAFLTQTVNLDDTTVKFEIWDTAGQE----------RYRSLAP 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCc--cceeEEEEEEEECCEEEEEEEEeCCchH----------HHHHHHH
Confidence 4899999999999999999998865331 1121 22223333444444 578999999986 4445556
Q ss_pred HHHhccceEEEEeecCCCCChhh-HHHHHHHHHhC-CCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccC
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHA-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 309 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~L~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~ 309 (640)
.+++.+|++++|+|++++.+... ..+...+.... ++.|+++|+||+|+..................+. .++++||++
T Consensus 69 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 147 (163)
T cd01860 69 MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGL-LFFETSAKT 147 (163)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCC-EEEEEECCC
Confidence 78889999999999987655443 22334443332 5689999999999886544444444455566665 689999999
Q ss_pred CCChhHHHHHhccch
Q 006555 310 GLGMTELYEALRPSV 324 (640)
Q Consensus 310 g~gi~eL~~~I~~~l 324 (640)
|.|++++++.|.+.+
T Consensus 148 ~~~v~~l~~~l~~~l 162 (163)
T cd01860 148 GENVNELFTEIAKKL 162 (163)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999987654
No 92
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.82 E-value=1.3e-19 Score=171.55 Aligned_cols=155 Identities=19% Similarity=0.152 Sum_probs=110.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCe--eEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
++|+++|.+|||||||++++....... .... +..+.....+..++. .+.+|||||++ ++.....
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE--KYDP--TIEDFYRKEIEVDSSPSVLEILDTAGTE----------QFASMRD 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--CCCC--chhheEEEEEEECCEEEEEEEEECCCcc----------cccchHH
Confidence 489999999999999999999875432 1222 333454555555554 57899999987 3334556
Q ss_pred HHHhccceEEEEeecCCCCChhh-HHHHHHHHHh--CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeecc
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~L~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~ 308 (640)
.+++++|++++|+|++++.+..+ .++..++.+. ..++|+++|+||+|+.........+........+. +++++||+
T Consensus 68 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 146 (163)
T cd04176 68 LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGC-PFMETSAK 146 (163)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCC-EEEEecCC
Confidence 67899999999999998766554 2334444443 24789999999999876444333333333444555 67999999
Q ss_pred CCCChhHHHHHhccc
Q 006555 309 TGLGMTELYEALRPS 323 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~ 323 (640)
+|.|++++++.+.+.
T Consensus 147 ~~~~v~~l~~~l~~~ 161 (163)
T cd04176 147 SKTMVNELFAEIVRQ 161 (163)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999988754
No 93
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.82 E-value=1.6e-19 Score=174.59 Aligned_cols=156 Identities=12% Similarity=0.125 Sum_probs=116.9
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 230 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 230 (640)
..+|+++|.++||||||+++++...... .... |..+.....+..++ ..+.+|||+|++ ++..+.
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~~--~~~p--T~~~~~~~~~~~~~~~~~l~iwDtaG~e----------~~~~~~ 70 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFPE--NYVP--TVFENYTASFEIDTQRIELSLWDTSGSP----------YYDNVR 70 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCC--ccCC--ceeeeeEEEEEECCEEEEEEEEECCCch----------hhHhhh
Confidence 4689999999999999999999875422 1211 22233333444544 579999999997 555566
Q ss_pred HHHHhccceEEEEeecCCCCChhhH--HHHHHHHHhCCCCcEEEEecCCCCCcC------------CccchHHHHHHHHh
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLM 296 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~L~~~~~~~p~ilV~NK~Dl~~~------------~~~~~~~~~~~~~~ 296 (640)
..+++.||++++|+|++++.+.+.. .+.+.+++..++.|+++|+||+|+... ..+..++....+..
T Consensus 71 ~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~ 150 (182)
T cd04172 71 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQ 150 (182)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHH
Confidence 7789999999999999998777752 345555555668899999999998642 23555666677777
Q ss_pred cCCCCcEEeeccCCCC-hhHHHHHhcc
Q 006555 297 LGFGDPIAISAETGLG-MTELYEALRP 322 (640)
Q Consensus 297 ~g~~~~i~iSA~~g~g-i~eL~~~I~~ 322 (640)
.+...++++||++|.| |+++|+.+..
T Consensus 151 ~~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 151 IGAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred cCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 7755789999999998 9999988765
No 94
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.82 E-value=1.7e-19 Score=173.41 Aligned_cols=157 Identities=14% Similarity=0.120 Sum_probs=116.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|.++||||||+.+++...... .... |..+.....+..++ .++.+|||+|++ ++..+..
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~--~~~~--Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~----------~~~~~~~ 67 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPT--DYIP--TVFDNFSANVSVDGNTVNLGLWDTAGQE----------DYNRLRP 67 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC--CCCC--cceeeeEEEEEECCEEEEEEEEECCCCc----------cccccch
Confidence 489999999999999999999876522 1111 22233333445544 578999999998 4445566
Q ss_pred HHHhccceEEEEeecCCCCChhhH--HHHHHHHHhCCCCcEEEEecCCCCCcCC----------ccchHHHHHHHHhcCC
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNG----------TGSLAGAAAESLMLGF 299 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~L~~~~~~~p~ilV~NK~Dl~~~~----------~~~~~~~~~~~~~~g~ 299 (640)
.+++.||++|+|+|++++.+.++. .+...+++..++.|+++|+||+|+.+.. .+..++....+...+.
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 147 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGA 147 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCC
Confidence 789999999999999998888763 3445455445689999999999996542 2444555566666776
Q ss_pred CCcEEeeccCCCChhHHHHHhccch
Q 006555 300 GDPIAISAETGLGMTELYEALRPSV 324 (640)
Q Consensus 300 ~~~i~iSA~~g~gi~eL~~~I~~~l 324 (640)
..++++||++|.||+++++.+.+.+
T Consensus 148 ~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 148 AAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred CEEEECCCCcccCHHHHHHHHHHHH
Confidence 4589999999999999999988654
No 95
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.82 E-value=2.9e-19 Score=172.36 Aligned_cols=155 Identities=12% Similarity=0.121 Sum_probs=115.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|.+|||||||++++.+.... ..... |..+.....+.+++ ..+.+|||+|++ ++.....
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~--~~~~~--t~~~~~~~~~~~~~~~~~l~iwDt~G~~----------~~~~~~~ 67 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP--ETYVP--TVFENYTASFEIDEQRIELSLWDTSGSP----------YYDNVRP 67 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC--CCcCC--ceEEEEEEEEEECCEEEEEEEEECCCch----------hhhhcch
Confidence 48999999999999999999987542 12211 22233333445555 568999999987 4445556
Q ss_pred HHHhccceEEEEeecCCCCChhhH--HHHHHHHHhCCCCcEEEEecCCCCCcC------------CccchHHHHHHHHhc
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLML 297 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~L~~~~~~~p~ilV~NK~Dl~~~------------~~~~~~~~~~~~~~~ 297 (640)
.+++.||++|+|+|++++.+.++. .+...+++..++.|+++|+||+|+..+ ..+..++....+..+
T Consensus 68 ~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~ 147 (178)
T cd04131 68 LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQL 147 (178)
T ss_pred hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 688999999999999998887752 355556666678999999999998642 234455666677777
Q ss_pred CCCCcEEeeccCCCC-hhHHHHHhcc
Q 006555 298 GFGDPIAISAETGLG-MTELYEALRP 322 (640)
Q Consensus 298 g~~~~i~iSA~~g~g-i~eL~~~I~~ 322 (640)
+...++++||++|+| |+++|..+..
T Consensus 148 ~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 148 GAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred CCCEEEECccCcCCcCHHHHHHHHHH
Confidence 765689999999995 9999998776
No 96
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.82 E-value=5e-19 Score=167.63 Aligned_cols=157 Identities=20% Similarity=0.192 Sum_probs=108.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEE---CCeeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL---GDLRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
+|+++|.+|||||||+++|............. ++..+.....+.. ...++.+|||||+. ++..+..
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 70 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLM-TTGCDFVVKEVPVDTDNTVELFIFDSAGQE----------LYSDMVS 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCC-ceEEEEEEEEEEeCCCCEEEEEEEECCCHH----------HHHHHHH
Confidence 79999999999999999998642211122221 1223443344433 23689999999986 4445667
Q ss_pred HHHhccceEEEEeecCCCCChhhH-HHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCC
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 310 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g 310 (640)
.++.++|++++|+|.+++.+..+. .+.+.+.....+.|+++|+||+|+.+................+. .++++||++|
T Consensus 71 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 149 (164)
T cd04101 71 NYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQL-KFFKTSALRG 149 (164)
T ss_pred HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCC-eEEEEeCCCC
Confidence 788999999999999876555432 23333333334689999999999976544333333333444554 6799999999
Q ss_pred CChhHHHHHhccc
Q 006555 311 LGMTELYEALRPS 323 (640)
Q Consensus 311 ~gi~eL~~~I~~~ 323 (640)
.|++++++.+.+.
T Consensus 150 ~gi~~l~~~l~~~ 162 (164)
T cd04101 150 VGYEEPFESLARA 162 (164)
T ss_pred CChHHHHHHHHHH
Confidence 9999999988764
No 97
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.82 E-value=7.9e-20 Score=163.95 Aligned_cols=158 Identities=22% Similarity=0.235 Sum_probs=130.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHH
Q 006555 152 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGM 229 (640)
Q Consensus 152 ~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 229 (640)
..++|.++|.+|||||||+-+++...+.. ....++..|.....+.++| .++.||||+|++ +++.+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~---~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqE----------rFRtL 76 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDD---LHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQE----------RFRTL 76 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCc---cCCceeeeeEEEEEEEEcCceEEEEEEeccchH----------hhhcc
Confidence 35799999999999999999999876532 2222366788888877776 478999999999 88899
Q ss_pred HHHHHhccceEEEEeecCCCCChhhHHHHHHHHHh-----CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEE
Q 006555 230 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 304 (640)
Q Consensus 230 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~-----~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~ 304 (640)
+..|++.|..+|+|+|++.+.++... --|+++. .+++-.++|+||+|...++.+..++....+++++. -.++
T Consensus 77 TpSyyRgaqGiIlVYDVT~Rdtf~kL--d~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~-LFiE 153 (209)
T KOG0080|consen 77 TPSYYRGAQGIILVYDVTSRDTFVKL--DIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRC-LFIE 153 (209)
T ss_pred CHhHhccCceeEEEEEccchhhHHhH--HHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCc-EEEE
Confidence 99999999999999999998888754 3455542 34666789999999988888888888888888887 7799
Q ss_pred eeccCCCChhHHHHHhccchH
Q 006555 305 ISAETGLGMTELYEALRPSVE 325 (640)
Q Consensus 305 iSA~~g~gi~eL~~~I~~~l~ 325 (640)
+||++.+|+...|+.+.+.+-
T Consensus 154 ~SAkt~~~V~~~FeelveKIi 174 (209)
T KOG0080|consen 154 CSAKTRENVQCCFEELVEKII 174 (209)
T ss_pred cchhhhccHHHHHHHHHHHHh
Confidence 999999999999988876553
No 98
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.82 E-value=2.7e-19 Score=178.83 Aligned_cols=160 Identities=11% Similarity=0.072 Sum_probs=119.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 230 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 230 (640)
..+|+++|.+|||||||++++++..+.. .... |..+.....+..++ ..+.||||+|.+ ++..+.
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~--~y~p--Ti~~~~~~~i~~~~~~v~l~iwDTaG~e----------~~~~~~ 78 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPE--TYVP--TVFENYTAGLETEEQRVELSLWDTSGSP----------YYDNVR 78 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCC--CcCC--ceeeeeEEEEEECCEEEEEEEEeCCCch----------hhHHHH
Confidence 4589999999999999999999875422 1111 22222223344444 579999999987 555666
Q ss_pred HHHHhccceEEEEeecCCCCChhh--HHHHHHHHHhCCCCcEEEEecCCCCCcC------------CccchHHHHHHHHh
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLM 296 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~--~~~~~~L~~~~~~~p~ilV~NK~Dl~~~------------~~~~~~~~~~~~~~ 296 (640)
..++..||++++|+|++++.+... ..+...+++..++.|+|+|+||+|+... ..+..++....+..
T Consensus 79 ~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~ 158 (232)
T cd04174 79 PLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQ 158 (232)
T ss_pred HHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHH
Confidence 778999999999999998887764 2345555555568899999999998642 34555667777778
Q ss_pred cCCCCcEEeeccCCC-ChhHHHHHhccchHH
Q 006555 297 LGFGDPIAISAETGL-GMTELYEALRPSVED 326 (640)
Q Consensus 297 ~g~~~~i~iSA~~g~-gi~eL~~~I~~~l~~ 326 (640)
++...++++||++|. ||+++|+.+...+.+
T Consensus 159 ~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 159 LGAEVYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred cCCCEEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence 887568999999998 899999998876543
No 99
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.1e-19 Score=171.46 Aligned_cols=161 Identities=19% Similarity=0.248 Sum_probs=134.2
Q ss_pred ccCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCe--eEEEEeCCCCccccCccchHHHHH
Q 006555 150 INLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRTA 227 (640)
Q Consensus 150 ~~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~ 227 (640)
.+..++|+++|+++||||-|+.+++...+...+.. +...+.....+.++++ +.+||||+|++ +++
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~Sks---TIGvef~t~t~~vd~k~vkaqIWDTAGQE----------Ryr 77 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKS---TIGVEFATRTVNVDGKTVKAQIWDTAGQE----------RYR 77 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCccccc---ceeEEEEeeceeecCcEEEEeeecccchh----------hhc
Confidence 45678999999999999999999999877554332 3677777777777774 67999999999 888
Q ss_pred HHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHh----CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcE
Q 006555 228 GMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPI 303 (640)
Q Consensus 228 ~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~----~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i 303 (640)
..+..|++.|..+++|+|++...+++ .+.+||++. .+++++++|+||+||...+.+..++....+...++ ..+
T Consensus 78 AitSaYYrgAvGAllVYDITr~~Tfe--nv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l-~f~ 154 (222)
T KOG0087|consen 78 AITSAYYRGAVGALLVYDITRRQTFE--NVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGL-FFL 154 (222)
T ss_pred cccchhhcccceeEEEEechhHHHHH--HHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCc-eEE
Confidence 89999999999999999999988888 556666553 35889999999999999887777877777777777 789
Q ss_pred EeeccCCCChhHHHHHhccchHH
Q 006555 304 AISAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 304 ~iSA~~g~gi~eL~~~I~~~l~~ 326 (640)
++||..+.|+++.++.+...+-.
T Consensus 155 EtSAl~~tNVe~aF~~~l~~I~~ 177 (222)
T KOG0087|consen 155 ETSALDATNVEKAFERVLTEIYK 177 (222)
T ss_pred EecccccccHHHHHHHHHHHHHH
Confidence 99999999999999877765543
No 100
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.82 E-value=4.6e-19 Score=171.10 Aligned_cols=160 Identities=24% Similarity=0.289 Sum_probs=112.0
Q ss_pred ccccCCCEEEEEeCCCCCHHHHHHHHHcCC-ceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHH
Q 006555 148 IDINLLPTVMIIGRPNVGKSALFNRLIRRR-EALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRT 226 (640)
Q Consensus 148 ~~~~~~~~V~lvG~~nvGKSSLin~L~~~~-~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ 226 (640)
.+.+..++|+|+|.+|||||||+|+|++.. ...++..++ +|++...... + ..+.+|||||+...........++
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~--~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~ 87 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPG--RTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKW 87 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCC--cceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHH
Confidence 344567899999999999999999999975 455666666 7777654433 2 379999999987543322223334
Q ss_pred HHHHHHHHh---ccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCcc--chHHHHHHHHhcCC-C
Q 006555 227 AGMTANVLA---KTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTG--SLAGAAAESLMLGF-G 300 (640)
Q Consensus 227 ~~~~~~~~~---~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~g~-~ 300 (640)
......+++ .+|++++|+|++.+.+..+.++.+++... ++|+++|+||+|+..+.+. ...+....+...+. .
T Consensus 88 ~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~--~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (179)
T TIGR03598 88 QKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER--GIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP 165 (179)
T ss_pred HHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence 444444554 45799999999998888887777777665 7899999999999753221 11222233333332 2
Q ss_pred CcEEeeccCCCChh
Q 006555 301 DPIAISAETGLGMT 314 (640)
Q Consensus 301 ~~i~iSA~~g~gi~ 314 (640)
.++++||++|+|++
T Consensus 166 ~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKTGID 179 (179)
T ss_pred ceEEEECCCCCCCC
Confidence 78999999999984
No 101
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.82 E-value=6.9e-19 Score=165.79 Aligned_cols=164 Identities=24% Similarity=0.345 Sum_probs=120.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 233 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 233 (640)
.+|+++|.+|+|||||+|+|++.+.+.+...+. ++++.........+..+.+|||||+...... ............
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~--~~~~~~~~~~~~ 79 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQ--TTRNRIRGIYTDDDAQIIFVDTPGIHKPKKK--LGERMVKAAWSA 79 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCCC--ceeceEEEEEEcCCeEEEEEECCCCCcchHH--HHHHHHHHHHHH
Confidence 589999999999999999999988776665555 6777666666667789999999999743321 111233445567
Q ss_pred HhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCCh
Q 006555 234 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 313 (640)
Q Consensus 234 ~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~gi 313 (640)
+..+|++++|+|++++.+..+..+.+.+... +.|+++|+||+|+..................+..+++++|++++.|+
T Consensus 80 ~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 80 LKDVDLVLFVVDASEPIGEGDEFILELLKKS--KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred HHhCCEEEEEEECCCccCchHHHHHHHHHHh--CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 8999999999999987666656666666654 68999999999997432211111222222333457899999999999
Q ss_pred hHHHHHhccc
Q 006555 314 TELYEALRPS 323 (640)
Q Consensus 314 ~eL~~~I~~~ 323 (640)
+++++.|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999988654
No 102
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.82 E-value=1.6e-19 Score=198.04 Aligned_cols=150 Identities=35% Similarity=0.494 Sum_probs=120.9
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
..++|+++|.||+|||||+|+|++.+..++++.+|+|+|.....+.++|.++.+|||||+.+. ....+.+...++..+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~--~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRET--DDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCC--ccHHHHHHHHHHHHH
Confidence 358999999999999999999999887889999999999999999999999999999998643 122333444566778
Q ss_pred HhhccEEEEEecccHH------HHH--HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEecc
Q 006555 436 LMRAHVVALVLDAEEV------RAV--EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 507 (640)
Q Consensus 436 i~~advvllVvDa~~~------~~~--~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSA 507 (640)
+..+|++++|+|++++ ... ..++|+++|+||+|+.+.... . .....+++++||
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~~~-----------~--------~~~~~~~i~iSA 352 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGEIDL-----------E--------EENGKPVIRISA 352 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccccchh-----------h--------hccCCceEEEEe
Confidence 8999999999999875 111 257899999999999754210 0 112457899999
Q ss_pred ccCCCHHHHHHHHHHHHHH
Q 006555 508 LEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 508 k~g~gv~~l~~~i~~~~~~ 526 (640)
++|.|++++++.+.+.+..
T Consensus 353 ktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 353 KTGEGIDELREAIKELAFG 371 (449)
T ss_pred eCCCCHHHHHHHHHHHHhh
Confidence 9999999999999887654
No 103
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.82 E-value=5.6e-19 Score=175.54 Aligned_cols=158 Identities=25% Similarity=0.215 Sum_probs=112.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 234 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 234 (640)
+|+++|.+|||||||++++++...... .+ ++..+. ....+....+.+|||||+. ++......++
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~~--~~--Tig~~~--~~~~~~~~~l~iwDt~G~e----------~~~~l~~~~~ 65 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKDT--VS--TVGGAF--YLKQWGPYNISIWDTAGRE----------QFHGLGSMYC 65 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCC--CC--ccceEE--EEEEeeEEEEEEEeCCCcc----------cchhhHHHHh
Confidence 799999999999999999998765321 22 122222 2334456789999999997 3444556778
Q ss_pred hccceEEEEeecCCCCChhhHH-HHHHHHH-hCCCCcEEEEecCCCCCc-------------------CCccchHHHHHH
Q 006555 235 AKTQFAIFMIDVRSGLHPLDLE-VGKWLRK-HAPQIKPIVAMNKCESLH-------------------NGTGSLAGAAAE 293 (640)
Q Consensus 235 ~~ad~vl~VvD~s~~~~~~~~~-~~~~L~~-~~~~~p~ilV~NK~Dl~~-------------------~~~~~~~~~~~~ 293 (640)
+.+|++|+|+|++++.+.++.. ++..+.+ ...+.|+|+|+||+|+.. .+.+..++....
T Consensus 66 ~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~ 145 (220)
T cd04126 66 RGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAF 145 (220)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHH
Confidence 9999999999999887776532 2222222 234689999999999975 233444555555
Q ss_pred HHhcCC-------------CCcEEeeccCCCChhHHHHHhccchHHHH
Q 006555 294 SLMLGF-------------GDPIAISAETGLGMTELYEALRPSVEDYM 328 (640)
Q Consensus 294 ~~~~g~-------------~~~i~iSA~~g~gi~eL~~~I~~~l~~~~ 328 (640)
+...+. ..++++||++|.||+++++.+.+.+.+.+
T Consensus 146 a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~ 193 (220)
T cd04126 146 YKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLI 193 (220)
T ss_pred HHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence 555541 25799999999999999999987765533
No 104
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.82 E-value=3.8e-19 Score=193.86 Aligned_cols=160 Identities=26% Similarity=0.333 Sum_probs=122.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 152 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 152 ~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
..++|+++|.||||||||+|+|++...+++++.++ +|++.....+.+++.++.+|||||+.+... .........+.
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pg--tTrd~~~~~i~~~g~~v~l~DTaG~~~~~~--~ie~~gi~~~~ 277 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKG--TTRDVVEGDFELNGILIKLLDTAGIREHAD--FVERLGIEKSF 277 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCC--cEEEEEEEEEEECCEEEEEeeCCCcccchh--HHHHHHHHHHH
Confidence 34699999999999999999999988888888888 999999999999999999999999974321 11111224556
Q ss_pred HHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCC
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGL 311 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~ 311 (640)
.+++.+|++++|+|++++.+.++. ++..+.. .++|+++|+||+|+... + . ......++. +++++||++ .
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~--~~~piIlV~NK~Dl~~~-~--~---~~~~~~~~~-~~~~vSak~-~ 346 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF-LIIDLNK--SKKPFILVLNKIDLKIN-S--L---EFFVSSKVL-NSSNLSAKQ-L 346 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH-HHHHHhh--CCCCEEEEEECccCCCc-c--h---hhhhhhcCC-ceEEEEEec-C
Confidence 788999999999999988776654 3333332 37899999999998653 1 1 111223344 578999998 6
Q ss_pred ChhHHHHHhccchHH
Q 006555 312 GMTELYEALRPSVED 326 (640)
Q Consensus 312 gi~eL~~~I~~~l~~ 326 (640)
|++++++.+.+.+.+
T Consensus 347 gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 347 KIKALVDLLTQKINA 361 (442)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999998877654
No 105
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.82 E-value=1.6e-19 Score=169.54 Aligned_cols=145 Identities=29% Similarity=0.395 Sum_probs=107.6
Q ss_pred EEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHH--hhc
Q 006555 362 IVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL--MRA 439 (640)
Q Consensus 362 ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i--~~a 439 (640)
++|++|||||||+|++++.. ..+++++|+|++.....+.+++..+.+|||||+.+......... ....++ ..+
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~----~~~~~~~~~~~ 75 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEK----VARDFLLGEKP 75 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHH----HHHHHhcCCCC
Confidence 57999999999999999875 67788899999988888889999999999999866532111111 122334 489
Q ss_pred cEEEEEecccHH--------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEeccccCC
Q 006555 440 HVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGR 511 (640)
Q Consensus 440 dvvllVvDa~~~--------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g~ 511 (640)
|++++|+|+++. .....++|+++|+||+|+.+........+ .+.. ..+.+++++||++|.
T Consensus 76 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~--------~~~~----~~~~~~~~iSa~~~~ 143 (158)
T cd01879 76 DLIVNVVDATNLERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLD--------KLSE----LLGVPVVPTSARKGE 143 (158)
T ss_pred cEEEEEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHH--------HHHH----hhCCCeEEEEccCCC
Confidence 999999999875 22346899999999999976532211111 1111 124689999999999
Q ss_pred CHHHHHHHHHHH
Q 006555 512 GRIAVMHQVIDT 523 (640)
Q Consensus 512 gv~~l~~~i~~~ 523 (640)
|++++++.+.+.
T Consensus 144 ~~~~l~~~l~~~ 155 (158)
T cd01879 144 GIDELKDAIAEL 155 (158)
T ss_pred CHHHHHHHHHHH
Confidence 999999988765
No 106
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.82 E-value=2.3e-19 Score=195.52 Aligned_cols=151 Identities=32% Similarity=0.391 Sum_probs=118.8
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
..++|+++|+||||||||+|+|++.+..++++++|||+|.....+.++|..+.+|||||+.+.. ...+.....++..+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~--~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA--DFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch--hHHHHHHHHHHHHH
Confidence 4689999999999999999999998888899999999999999999999999999999986542 11233444566788
Q ss_pred HhhccEEEEEecccHH---------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEec
Q 006555 436 LMRAHVVALVLDAEEV---------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTS 506 (640)
Q Consensus 436 i~~advvllVvDa~~~---------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iS 506 (640)
++.+|++++|+|++++ .....++|+|+|+||+|+.+. +. +. + ....+.+++++|
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~~-~~----~~--------~----~~~~~~~~~~vS 342 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKIN-SL----EF--------F----VSSKVLNSSNLS 342 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCCCc-ch----hh--------h----hhhcCCceEEEE
Confidence 8999999999999865 112257899999999999643 11 00 1 111245789999
Q ss_pred cccCCCHHHHHHHHHHHHHH
Q 006555 507 ALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 507 Ak~g~gv~~l~~~i~~~~~~ 526 (640)
|++ .|++++++.+.+.+.+
T Consensus 343 ak~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 343 AKQ-LKIKALVDLLTQKINA 361 (442)
T ss_pred Eec-CCHHHHHHHHHHHHHH
Confidence 998 6999999988876654
No 107
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.82 E-value=6.5e-19 Score=168.02 Aligned_cols=160 Identities=18% Similarity=0.217 Sum_probs=113.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|++|||||||+|++++....... .+ +.+.+.....+.+.+ ..+.+|||||+. .+..+..
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~-~~--t~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~ 67 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQY-KA--TIGADFLTKEVTVDDKLVTLQIWDTAGQE----------RFQSLGV 67 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCc-CC--ccceEEEEEEEEECCEEEEEEEEeCCChH----------HHHhHHH
Confidence 37999999999999999999987643211 11 134444444555555 457799999986 4445667
Q ss_pred HHHhccceEEEEeecCCCCChhhHH-HHHHHHHhC-----CCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEe
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKHA-----PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 305 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~L~~~~-----~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~i 305 (640)
.+++.+|++|+|+|++++.+.++.. +.+.+.... .++|+++|+||+|+..+.....+.........+...++++
T Consensus 68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFET 147 (172)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEE
Confidence 7889999999999999876554322 222222221 2789999999999985443333444445556665588999
Q ss_pred eccCCCChhHHHHHhccchHH
Q 006555 306 SAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 306 SA~~g~gi~eL~~~I~~~l~~ 326 (640)
||++|.|++++++.+.+.+.+
T Consensus 148 Sa~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 148 SAKEAINVEQAFETIARKALE 168 (172)
T ss_pred ECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999876543
No 108
>PTZ00369 Ras-like protein; Provisional
Probab=99.82 E-value=2.6e-19 Score=174.42 Aligned_cols=159 Identities=17% Similarity=0.183 Sum_probs=112.9
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 230 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 230 (640)
.++|+++|.+|||||||++++.+...... ... +..+.....+..++ ..+.+|||||+. ++..+.
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~l~ 70 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDE--YDP--TIEDSYRKQCVIDEETCLLDILDTAGQE----------EYSAMR 70 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcC--cCC--chhhEEEEEEEECCEEEEEEEEeCCCCc----------cchhhH
Confidence 46999999999999999999998754321 111 22233334444444 468899999997 444556
Q ss_pred HHHHhccceEEEEeecCCCCChhhH-HHHHHHHHh--CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeec
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 307 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA 307 (640)
..++..+|++++|+|++++.+.++. .+.+.+.+. ..+.|+++|+||+|+.........+.......++. +++++||
T Consensus 71 ~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~-~~~e~Sa 149 (189)
T PTZ00369 71 DQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGI-PFLETSA 149 (189)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCC-EEEEeeC
Confidence 6788999999999999987665542 233333332 23789999999999876544343344444555565 6899999
Q ss_pred cCCCChhHHHHHhccchHH
Q 006555 308 ETGLGMTELYEALRPSVED 326 (640)
Q Consensus 308 ~~g~gi~eL~~~I~~~l~~ 326 (640)
++|.|++++++.|.+.+.+
T Consensus 150 k~~~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 150 KQRVNVDEAFYELVREIRK 168 (189)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999877654
No 109
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.81 E-value=1.5e-19 Score=191.69 Aligned_cols=146 Identities=27% Similarity=0.383 Sum_probs=111.0
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEE-CCeEEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY-QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
.++|+++|.||||||||+|+|++.+ ..+.+.+++|+|+....+.+ ++..+.||||||+.+.......+.+ ..+...
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f--~~tle~ 265 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAF--RATLEE 265 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHH--HHHHHH
Confidence 4799999999999999999999876 77889999999999888888 6789999999998543212212222 345667
Q ss_pred HhhccEEEEEecccHH----------HHHH----cCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 436 LMRAHVVALVLDAEEV----------RAVE----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 436 i~~advvllVvDa~~~----------~~~~----~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
+..||++|+|+|++++ ..+. .++|+++|+||+|+.+... +.. ... ...+
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----------v~~-~~~-----~~~~ 328 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----------IER-LEE-----GYPE 328 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----------HHH-HHh-----CCCC
Confidence 8899999999999865 1111 2789999999999975311 100 000 1236
Q ss_pred EEEeccccCCCHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVID 522 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~ 522 (640)
++++||++|.|++++++.|.+
T Consensus 329 ~i~iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 329 AVFVSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred EEEEEccCCCCHHHHHHHHHh
Confidence 899999999999999998865
No 110
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=7.8e-20 Score=169.92 Aligned_cols=147 Identities=20% Similarity=0.221 Sum_probs=112.8
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
..|++++|+.+||||||++++.... +.....+.+..|.....+.+.|+ .++||||||++++. ...-.
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~-fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFr----------slips 90 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDK-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR----------SLIPS 90 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhh-hcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHh----------hhhhh
Confidence 3799999999999999999999653 55556667778888888888776 56799999976653 12347
Q ss_pred HHhhccEEEEEecccHH-------HHHH--------cCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCC
Q 006555 435 NLMRAHVVALVLDAEEV-------RAVE--------EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 499 (640)
Q Consensus 435 ~i~~advvllVvDa~~~-------~~~~--------~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 499 (640)
|++++.++|+|||.++. .+++ .+.-++||+||.||.+.+ ++..+.++..++..+
T Consensus 91 Y~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkr-----------qvs~eEg~~kAkel~ 159 (221)
T KOG0094|consen 91 YIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKR-----------QVSIEEGERKAKELN 159 (221)
T ss_pred hccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchh-----------hhhHHHHHHHHHHhC
Confidence 89999999999999986 1111 135578999999999863 333334444445557
Q ss_pred CcEEEeccccCCCHHHHHHHHHHHHH
Q 006555 500 IPVVFTSALEGRGRIAVMHQVIDTYQ 525 (640)
Q Consensus 500 ~~~v~iSAk~g~gv~~l~~~i~~~~~ 525 (640)
+-++++||+.|.||.++|..|...+.
T Consensus 160 a~f~etsak~g~NVk~lFrrIaa~l~ 185 (221)
T KOG0094|consen 160 AEFIETSAKAGENVKQLFRRIAAALP 185 (221)
T ss_pred cEEEEecccCCCCHHHHHHHHHHhcc
Confidence 78999999999999999999876543
No 111
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.81 E-value=2.3e-19 Score=188.70 Aligned_cols=154 Identities=22% Similarity=0.317 Sum_probs=114.0
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEE-CCeEEEEEEeCCCCcccccCCchhhHHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY-QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 436 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 436 (640)
-.|+|||.||||||||+|+|++.. ..++++++||+++..+.+.+ ++.++.+|||||+.+..... ..+ ....++++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~--~gL-g~~flrhi 234 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEG--AGL-GHRFLKHI 234 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcc--ccH-HHHHHHHh
Confidence 369999999999999999999764 56899999999999998888 66789999999987542111 112 23556788
Q ss_pred hhccEEEEEecccHH----------HHHH------cCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 437 MRAHVVALVLDAEEV----------RAVE------EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 437 ~~advvllVvDa~~~----------~~~~------~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
+++|++|+|+|+++. ..+. .++|+++|+||+|+.+..... +.. ... .. .....
T Consensus 235 e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~---~~~---~~~-~~----~~~~~ 303 (335)
T PRK12299 235 ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEER---EKR---AAL-EL----AALGG 303 (335)
T ss_pred hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHH---HHH---HHH-HH----HhcCC
Confidence 899999999999853 1111 368999999999997542211 100 000 11 11246
Q ss_pred cEEEeccccCCCHHHHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
+++++||++++|++++++.+.+.+.+
T Consensus 304 ~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 304 PVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 89999999999999999999877654
No 112
>PLN03118 Rab family protein; Provisional
Probab=99.81 E-value=3.9e-19 Score=176.25 Aligned_cols=159 Identities=22% Similarity=0.223 Sum_probs=115.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 230 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 230 (640)
.++|+++|.+|||||||+++|++........+ ++.+.....+.+++ ..+.+|||||+. ++..+.
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~ 79 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVEDLAPT----IGVDFKIKQLTVGGKRLKLTIWDTAGQE----------RFRTLT 79 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCcCCC----ceeEEEEEEEEECCEEEEEEEEECCCch----------hhHHHH
Confidence 46999999999999999999998765332222 33344444445544 578999999987 555666
Q ss_pred HHHHhccceEEEEeecCCCCChhhHH--HHHHHHHh--CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEee
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLDLE--VGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 306 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~~~--~~~~L~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iS 306 (640)
..+++.+|++++|+|.+++.+..+.. +...+... ..+.|+++|+||+|+.........+........+. .++++|
T Consensus 80 ~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~-~~~e~S 158 (211)
T PLN03118 80 SSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGC-LFLECS 158 (211)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCC-EEEEEe
Confidence 78899999999999999876666432 22233322 23679999999999976554444444444555665 679999
Q ss_pred ccCCCChhHHHHHhccchHH
Q 006555 307 AETGLGMTELYEALRPSVED 326 (640)
Q Consensus 307 A~~g~gi~eL~~~I~~~l~~ 326 (640)
|++|.|++++++.|...+.+
T Consensus 159 Ak~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 159 AKTRENVEQCFEELALKIME 178 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999987754
No 113
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.81 E-value=7.2e-19 Score=171.85 Aligned_cols=172 Identities=23% Similarity=0.298 Sum_probs=119.6
Q ss_pred ccccccCCCEEEEEeCCCCCHHHHHHHHHcCC-ceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHH
Q 006555 146 TKIDINLLPTVMIIGRPNVGKSALFNRLIRRR-EALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILD 224 (640)
Q Consensus 146 ~~~~~~~~~~V~lvG~~nvGKSSLin~L~~~~-~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~ 224 (640)
.+...+..++|+++|.+|||||||+|+|++.+ .+.++..++ +|++...... +.++.+|||||+...........
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~--~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~ 91 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPG--RTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKE 91 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCC--ceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHH
Confidence 33445567899999999999999999999875 455566666 7776654332 47899999999864332222233
Q ss_pred HHHHHHHHHHhc---cceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccch--HHHHHHHHhcCC
Q 006555 225 RTAGMTANVLAK---TQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSL--AGAAAESLMLGF 299 (640)
Q Consensus 225 ~~~~~~~~~~~~---ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~--~~~~~~~~~~g~ 299 (640)
++......++.. .+++++|+|.+.+.+..+.++.+++... ++|+++++||+|+....+... ......+... .
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~-~ 168 (196)
T PRK00454 92 KWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEY--GIPVLIVLTKADKLKKGERKKQLKKVRKALKFG-D 168 (196)
T ss_pred HHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHc--CCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc-C
Confidence 443444445554 4688899999888777776777777665 789999999999976432111 1111222222 2
Q ss_pred CCcEEeeccCCCChhHHHHHhccchH
Q 006555 300 GDPIAISAETGLGMTELYEALRPSVE 325 (640)
Q Consensus 300 ~~~i~iSA~~g~gi~eL~~~I~~~l~ 325 (640)
..++++||++|.|++++++.|.+.+.
T Consensus 169 ~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 169 DEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 37899999999999999999887664
No 114
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.81 E-value=3.3e-20 Score=170.69 Aligned_cols=154 Identities=21% Similarity=0.219 Sum_probs=112.2
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHH
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 433 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 433 (640)
..+||+++|++|||||||+|++.... +.......+..|.....+.++++ .++||||+|+.++. .+. .
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~k-F~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFq---------sLg-~ 76 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKK-FSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQ---------SLG-V 76 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH-HHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhh---------hcc-c
Confidence 46899999999999999999999764 33334445556677777777776 56799999976663 111 2
Q ss_pred HHHhhccEEEEEecccHH-----------HHH-------HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhC-
Q 006555 434 KNLMRAHVVALVLDAEEV-----------RAV-------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVI- 494 (640)
Q Consensus 434 ~~i~~advvllVvDa~~~-----------~~~-------~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~- 494 (640)
..+++||++++|||+.+. +.+ .+..|.||++||+|+..... +.++.+.++.+
T Consensus 77 aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~---------r~VS~~~Aq~WC 147 (210)
T KOG0394|consen 77 AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKS---------RQVSEKKAQTWC 147 (210)
T ss_pred ceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCcc---------ceeeHHHHHHHH
Confidence 467899999999999876 000 14679999999999976322 23333333333
Q ss_pred CCCCCCcEEEeccccCCCHHHHHHHHHHHHHHHhc
Q 006555 495 PQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCL 529 (640)
Q Consensus 495 ~~~~~~~~v~iSAk~g~gv~~l~~~i~~~~~~~~~ 529 (640)
....++|++++|||.+.||++.|+.+.+.......
T Consensus 148 ~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 148 KSKGNIPYFETSAKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred HhcCCceeEEecccccccHHHHHHHHHHHHHhccc
Confidence 33457899999999999999999999887654443
No 115
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.81 E-value=1.9e-19 Score=170.21 Aligned_cols=143 Identities=24% Similarity=0.233 Sum_probs=100.2
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|||||||++++.+... ...+.+|+.+.....+..++. .+.||||||+.+.. .....+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~~~~ 69 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFT----------AMRDLY 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCccccc----------hHHHHH
Confidence 6899999999999999999997642 334455555555556667765 45689999975432 112346
Q ss_pred HhhccEEEEEecccHH-----------HHH----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 436 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 436 i~~advvllVvDa~~~-----------~~~----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
++++|++++|+|+++. ... ..++|+++|+||+|+.+...... +. . ..+.+ ..+.
T Consensus 70 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~-~----~~~~~----~~~~ 138 (163)
T cd04136 70 IKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSR--EE-G----QALAR----QWGC 138 (163)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecH--HH-H----HHHHH----HcCC
Confidence 7789999999999875 111 13689999999999975422110 00 0 11111 1236
Q ss_pred cEEEeccccCCCHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
+++++||++|.|++++|+++.+.
T Consensus 139 ~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 139 PFYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred eEEEecCCCCCCHHHHHHHHHHh
Confidence 89999999999999999998764
No 116
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.81 E-value=1.9e-19 Score=170.71 Aligned_cols=144 Identities=22% Similarity=0.230 Sum_probs=101.2
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeE--EEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|||||||+++++... ....+++++.+.....+..++.. +.+|||||+.+.. . ....+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~-~~~~~ 69 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT---------A-MRDLY 69 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcchheEEEEEEECCEEEEEEEEECCCcccch---------h-HHHHH
Confidence 689999999999999999998553 33445566666555666777654 5699999964432 1 12346
Q ss_pred HhhccEEEEEecccHH-----------HHH----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 436 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 436 i~~advvllVvDa~~~-----------~~~----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
++.+|++++|+|.++. ... ..+.|+++|+||+|+........ +.. .++.+ ..+.
T Consensus 70 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~-----~~~~~----~~~~ 138 (164)
T cd04175 70 MKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK--EQG-----QNLAR----QWGC 138 (164)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcH--HHH-----HHHHH----HhCC
Confidence 7889999999998764 111 14689999999999975432110 000 11111 1246
Q ss_pred cEEEeccccCCCHHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
+++++||++|.|++++|.++.+.+
T Consensus 139 ~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 139 AFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHh
Confidence 899999999999999999998654
No 117
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.81 E-value=8.2e-19 Score=170.59 Aligned_cols=159 Identities=17% Similarity=0.173 Sum_probs=115.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
++|+++|.+|||||||+++|++....... .+ +.+.+.....+..++ ..+.+|||||.. ++.....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~-~~--t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~----------~~~~~~~ 67 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSEST-KS--TIGVDFKIKTVYIENKIIKLQIWDTNGQE----------RFRSLNN 67 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCC-CC--ceeeEEEEEEEEECCEEEEEEEEECCCcH----------HHHhhHH
Confidence 47999999999999999999987653211 12 144444444555544 467899999986 4445667
Q ss_pred HHHhccceEEEEeecCCCCChhhH-HHHHHHHHh-CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccC
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 309 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~ 309 (640)
.++..+|++++|+|++++.+..+. .+...+... ....|+++|+||+|+.+................++ +++++||++
T Consensus 68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~~ 146 (188)
T cd04125 68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNI-PFFETSAKQ 146 (188)
T ss_pred HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 789999999999999987665532 223333332 23579999999999986554444444445555666 789999999
Q ss_pred CCChhHHHHHhccchHH
Q 006555 310 GLGMTELYEALRPSVED 326 (640)
Q Consensus 310 g~gi~eL~~~I~~~l~~ 326 (640)
|.|++++++.+.+.+.+
T Consensus 147 ~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 147 SINVEEAFILLVKLIIK 163 (188)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887654
No 118
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.81 E-value=3.4e-19 Score=168.37 Aligned_cols=148 Identities=19% Similarity=0.216 Sum_probs=101.2
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCce--eecCcccceeeeEEEEEEEC-CeEEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRV--LVGPEAGLTRDSVRVHFEYQ-GRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~--~~~~~~gtT~d~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
.|+++|++|||||||+|+|++.... .....+++|.+.....+.+. +..+.+|||||+.++ . .....+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~---------~-~~~~~~ 71 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF---------I-KNMLAG 71 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHH---------H-HHHHhh
Confidence 5899999999999999999975322 22234577887766667776 789999999996432 1 223456
Q ss_pred HhhccEEEEEecccHH------H---HH-HcC-CcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEE
Q 006555 436 LMRAHVVALVLDAEEV------R---AV-EEG-RGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVF 504 (640)
Q Consensus 436 i~~advvllVvDa~~~------~---~~-~~~-~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~ 504 (640)
+..+|++++|+|+++. . .. ..+ +|+++|+||+|+..........+ .+...+... .....++++
T Consensus 72 ~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~ 145 (164)
T cd04171 72 AGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEE----EIRELLAGT--FLADAPIFP 145 (164)
T ss_pred hhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHH----HHHHHHHhc--CcCCCcEEE
Confidence 7789999999999862 1 11 124 49999999999975421111111 111112111 013568999
Q ss_pred eccccCCCHHHHHHHHHH
Q 006555 505 TSALEGRGRIAVMHQVID 522 (640)
Q Consensus 505 iSAk~g~gv~~l~~~i~~ 522 (640)
+||++|.|++++++.+..
T Consensus 146 ~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 146 VSAVTGEGIEELKEYLDE 163 (164)
T ss_pred EeCCCCcCHHHHHHHHhh
Confidence 999999999999988753
No 119
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.81 E-value=2.6e-19 Score=170.19 Aligned_cols=146 Identities=22% Similarity=0.254 Sum_probs=102.6
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|||||||++++++... .....++.+.+.....+..++. .+.+|||||+.+.. .....+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~~~~~ 71 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR----------TITSSY 71 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHH----------HHHHHH
Confidence 6999999999999999999997643 2334455555555555666664 67899999964321 122456
Q ss_pred HhhccEEEEEecccHH-------HH---H----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 436 LMRAHVVALVLDAEEV-------RA---V----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 436 i~~advvllVvDa~~~-------~~---~----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
++.+|++|+|+|+++. .. . ..+.|+++|+||+|+....... .+. ...++...+++
T Consensus 72 ~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~--~~~---------~~~~~~~~~~~ 140 (166)
T cd01869 72 YRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVD--YSE---------AQEFADELGIP 140 (166)
T ss_pred hCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCC--HHH---------HHHHHHHcCCe
Confidence 7789999999999875 11 1 1468999999999987543211 011 11111123568
Q ss_pred EEEeccccCCCHHHHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVIDTYQ 525 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~~~~ 525 (640)
++++||++|.|++++|+.+.+.+.
T Consensus 141 ~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 141 FLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999987654
No 120
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.81 E-value=1.7e-19 Score=172.77 Aligned_cols=155 Identities=15% Similarity=0.118 Sum_probs=111.2
Q ss_pred EEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCe--eEEEEeCCCCccccCccchHHHHHHHHHHH
Q 006555 156 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRTAGMTANV 233 (640)
Q Consensus 156 V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 233 (640)
|+|+|.+|||||||++++++...... ... +..+.....+..++. .+.+|||||+. ++......+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~ 66 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPED--YVP--TVFENYSADVEVDGKPVELGLWDTAGQE----------DYDRLRPLS 66 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCC--CCC--cEEeeeeEEEEECCEEEEEEEEECCCCc----------ccchhchhh
Confidence 68999999999999999998765321 111 333444444555554 68999999987 333444567
Q ss_pred HhccceEEEEeecCCCCChhhH--HHHHHHHHhCCCCcEEEEecCCCCCcCCc------------cchHHHHHHHHhcCC
Q 006555 234 LAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNGT------------GSLAGAAAESLMLGF 299 (640)
Q Consensus 234 ~~~ad~vl~VvD~s~~~~~~~~--~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~------------~~~~~~~~~~~~~g~ 299 (640)
+..+|++++|+|++++.+.++. .+...+.+..++.|+++|+||+|+..+.. +..++....+...+.
T Consensus 67 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 146 (174)
T smart00174 67 YPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGA 146 (174)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCC
Confidence 8899999999999987666543 24444544556899999999999875321 223334445666776
Q ss_pred CCcEEeeccCCCChhHHHHHhccch
Q 006555 300 GDPIAISAETGLGMTELYEALRPSV 324 (640)
Q Consensus 300 ~~~i~iSA~~g~gi~eL~~~I~~~l 324 (640)
..++++||++|.|++++++.+.+.+
T Consensus 147 ~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 147 VKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999887643
No 121
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.81 E-value=2.1e-19 Score=172.28 Aligned_cols=147 Identities=18% Similarity=0.189 Sum_probs=101.9
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
.+||+++|.+|||||||++++.+... ...+..|..+.....+.+++. .+.||||||..+.. .....
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~l~~~ 69 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSF--PDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFT----------AMRDQ 69 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--CCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhH----------HHhHH
Confidence 37999999999999999999997643 223333333444445666674 57799999964331 12345
Q ss_pred HHhhccEEEEEecccHH----------HHH-----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCC
Q 006555 435 NLMRAHVVALVLDAEEV----------RAV-----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 499 (640)
Q Consensus 435 ~i~~advvllVvDa~~~----------~~~-----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 499 (640)
+++.+|++|+|+|+++. ..+ ..++|+|+|+||+|+.+..... .+....+++..+
T Consensus 70 ~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~-----------~~~~~~~a~~~~ 138 (172)
T cd04141 70 YMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVT-----------TEEGRNLAREFN 138 (172)
T ss_pred HhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccC-----------HHHHHHHHHHhC
Confidence 67889999999999876 011 1368999999999986542211 111111222235
Q ss_pred CcEEEeccccCCCHHHHHHHHHHHHHH
Q 006555 500 IPVVFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 500 ~~~v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
++++++||++|.||+++|+++.+.+.+
T Consensus 139 ~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 139 CPFFETSAALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred CEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 799999999999999999999876543
No 122
>PLN03110 Rab GTPase; Provisional
Probab=99.81 E-value=8.4e-19 Score=174.49 Aligned_cols=162 Identities=19% Similarity=0.221 Sum_probs=120.0
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHH
Q 006555 152 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGM 229 (640)
Q Consensus 152 ~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 229 (640)
...+|+++|.+|||||||+++|++....... .+ +++.+.....+.+++ ..+.||||||++ ++...
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~-~~--t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~----------~~~~~ 77 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLES-KS--TIGVEFATRTLQVEGKTVKAQIWDTAGQE----------RYRAI 77 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCC-CC--ceeEEEEEEEEEECCEEEEEEEEECCCcH----------HHHHH
Confidence 4569999999999999999999987653221 22 245565556666655 589999999987 55567
Q ss_pred HHHHHhccceEEEEeecCCCCChhhH-HHHHHHHHh-CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeec
Q 006555 230 TANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 307 (640)
Q Consensus 230 ~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA 307 (640)
...+++.++++++|+|.++..+.++. .++..++.. ..+.|+++|+||+|+........+.........++ .++++||
T Consensus 78 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~-~~~e~SA 156 (216)
T PLN03110 78 TSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGL-SFLETSA 156 (216)
T ss_pred HHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCC-EEEEEeC
Confidence 77889999999999999987666542 233333332 23789999999999976554444444444445555 7899999
Q ss_pred cCCCChhHHHHHhccchHHH
Q 006555 308 ETGLGMTELYEALRPSVEDY 327 (640)
Q Consensus 308 ~~g~gi~eL~~~I~~~l~~~ 327 (640)
++|.|++++++.|...+.+.
T Consensus 157 ~~g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 157 LEATNVEKAFQTILLEIYHI 176 (216)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999998877653
No 123
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.81 E-value=3.7e-19 Score=183.47 Aligned_cols=167 Identities=22% Similarity=0.288 Sum_probs=123.8
Q ss_pred HHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEE
Q 006555 225 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 304 (640)
Q Consensus 225 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~ 304 (640)
+..++....+..||+|++|+|++.+.+..+..+.+.+ .++|+++|+||+|+.+... .......+...+. .+++
T Consensus 10 k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~~~-~vi~ 82 (276)
T TIGR03596 10 KARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR----GNKPRLIVLNKADLADPAV--TKQWLKYFEEKGI-KALA 82 (276)
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH----CCCCEEEEEEccccCCHHH--HHHHHHHHHHcCC-eEEE
Confidence 5567778899999999999999998887776666655 2689999999999864311 1122222333343 6799
Q ss_pred eeccCCCChhHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEeCCCCchHHHHHHHhcCCcee
Q 006555 305 ISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVL 384 (640)
Q Consensus 305 iSA~~g~gi~eL~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKStL~n~l~~~~~~~ 384 (640)
+||+++.|+++|.+.+.+.+++..... .........++++++|.||||||||+|+|++.....
T Consensus 83 iSa~~~~gi~~L~~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~ 145 (276)
T TIGR03596 83 INAKKGKGVKKIIKAAKKLLKEKNEKL-----------------KAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAK 145 (276)
T ss_pred EECCCcccHHHHHHHHHHHHHHhhhhh-----------------hhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccc
Confidence 999999999999999887765421100 000011235899999999999999999999988888
Q ss_pred ecCcccceeeeEEEEEEECCeEEEEEEeCCCCcc
Q 006555 385 VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 418 (640)
Q Consensus 385 ~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~ 418 (640)
+++.+|+|+...... . +..+.|+||||+...
T Consensus 146 ~~~~~g~T~~~~~~~--~-~~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 146 VGNRPGVTKGQQWIK--L-SDGLELLDTPGILWP 176 (276)
T ss_pred cCCCCCeecceEEEE--e-CCCEEEEECCCcccC
Confidence 999999999876433 3 346899999998655
No 124
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.81 E-value=3.4e-19 Score=167.92 Aligned_cols=154 Identities=25% Similarity=0.329 Sum_probs=110.6
Q ss_pred ceEEEEeecCCCCChhhHHHH-HHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCChhHH
Q 006555 238 QFAIFMIDVRSGLHPLDLEVG-KWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTEL 316 (640)
Q Consensus 238 d~vl~VvD~s~~~~~~~~~~~-~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~gi~eL 316 (640)
|++++|+|++++.+..+..+. ..+.. .++|+|+|+||+|+..... .......+.......++++||++|.|+++|
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~--~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE--KGKKLILVLNKADLVPKEV--LRKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc--CCCCEEEEEechhcCCHHH--HHHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 789999999988777765555 34433 3789999999999965321 112222233333446799999999999999
Q ss_pred HHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeE
Q 006555 317 YEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSV 396 (640)
Q Consensus 317 ~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~ 396 (640)
.+.+.+.+.+........ .......+++++|.|||||||++|+|++.....+++.+|+|++..
T Consensus 77 ~~~i~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~ 139 (155)
T cd01849 77 ESAFTKQTNSNLKSYAKD-----------------GKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ 139 (155)
T ss_pred HHHHHHHhHHHHHHHHhc-----------------cccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE
Confidence 999876654321111000 001234789999999999999999999987778899999999987
Q ss_pred EEEEEECCeEEEEEEeCCC
Q 006555 397 RVHFEYQGRTVYLVDTAGW 415 (640)
Q Consensus 397 ~~~~~~~~~~~~liDTpG~ 415 (640)
...+ +..+.++||||+
T Consensus 140 ~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 140 EVKL---DNKIKLLDTPGI 155 (155)
T ss_pred EEEe---cCCEEEEECCCC
Confidence 6543 356899999995
No 125
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.81 E-value=4e-19 Score=167.51 Aligned_cols=153 Identities=21% Similarity=0.320 Sum_probs=112.9
Q ss_pred HHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeec
Q 006555 228 GMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 307 (640)
Q Consensus 228 ~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA 307 (640)
++....++++|++++|+|++++....+.++.+++... ++|+++|+||+|+.+... ...........+. +++++||
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~--~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~-~~~~iSa 78 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLEL--GKKLLIVLNKADLVPKEV--LEKWKSIKESEGI-PVVYVSA 78 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhC--CCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCC-cEEEEEc
Confidence 3445667789999999999987777766666666544 789999999999864211 1111111222333 6799999
Q ss_pred cCCCChhHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEeCCCCchHHHHHHHhcCCceeecC
Q 006555 308 ETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGP 387 (640)
Q Consensus 308 ~~g~gi~eL~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~ 387 (640)
++|.|+++|++.+.+.++. .....+++++|.+|+||||++|+|.+.....+++
T Consensus 79 ~~~~gi~~L~~~l~~~~~~---------------------------~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~ 131 (156)
T cd01859 79 KERLGTKILRRTIKELAKI---------------------------DGKEGKVGVVGYPNVGKSSIINALKGRHSASTSP 131 (156)
T ss_pred cccccHHHHHHHHHHHHhh---------------------------cCCCcEEEEECCCCCCHHHHHHHHhCCCccccCC
Confidence 9999999999998876642 0124689999999999999999999877777888
Q ss_pred cccceeeeEEEEEEECCeEEEEEEeCCC
Q 006555 388 EAGLTRDSVRVHFEYQGRTVYLVDTAGW 415 (640)
Q Consensus 388 ~~gtT~d~~~~~~~~~~~~~~liDTpG~ 415 (640)
.+|+|++.... . .+..+.+|||||+
T Consensus 132 ~~~~t~~~~~~--~-~~~~~~~~DtpGi 156 (156)
T cd01859 132 SPGYTKGEQLV--K-ITSKIYLLDTPGV 156 (156)
T ss_pred CCCeeeeeEEE--E-cCCCEEEEECcCC
Confidence 99988764322 2 2347899999995
No 126
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.81 E-value=2.8e-19 Score=170.98 Aligned_cols=158 Identities=15% Similarity=0.120 Sum_probs=109.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 230 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 230 (640)
.++|+++|.+|||||||++++++.... +..... ++..+.....+..++ ..+.+|||+|.. ++..+.
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~-T~~~~~~~~~~~~~~~~~~l~~~d~~g~~----------~~~~~~ 71 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSP-TIKPRYAVNTVEVYGQEKYLILREVGEDE----------VAILLN 71 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCC-ccCcceEEEEEEECCeEEEEEEEecCCcc----------cccccc
Confidence 569999999999999999999987653 122222 122333334455555 568899999987 233445
Q ss_pred HHHHhccceEEEEeecCCCCChhhHHHHHHHHHh--CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeecc
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~ 308 (640)
..++.++|++++|+|++++.+.+ .+..|+... ..+.|+++|+||+|+.+...............++...++++||+
T Consensus 72 ~~~~~~~d~~llv~d~~~~~s~~--~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (169)
T cd01892 72 DAELAACDVACLVYDSSDPKSFS--YCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSK 149 (169)
T ss_pred hhhhhcCCEEEEEEeCCCHHHHH--HHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEec
Confidence 56789999999999998764433 334444432 23689999999999965433222222333455666567999999
Q ss_pred CCCChhHHHHHhccch
Q 006555 309 TGLGMTELYEALRPSV 324 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~l 324 (640)
+|.|++++++.+.+.+
T Consensus 150 ~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 150 LGDSSNELFTKLATAA 165 (169)
T ss_pred cCccHHHHHHHHHHHh
Confidence 9999999999987654
No 127
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.81 E-value=5.7e-19 Score=175.05 Aligned_cols=158 Identities=25% Similarity=0.348 Sum_probs=117.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEEC-C--eeEEEEeCCCCccccCccchHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG-D--LRFKVLDSAGLETEATSGSILDRTAGMT 230 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 230 (640)
++|+++|.+|||||||+|+|++......+. + +++.+.....+... + ..+.+|||||+. ++....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~-~--ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~----------~~~~~~ 69 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSD-P--TVGVDFFSRLIEIEPGVRIKLQLWDTAGQE----------RFRSIT 69 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC-c--eeceEEEEEEEEECCCCEEEEEEEeCCcch----------hHHHHH
Confidence 589999999999999999999876544322 2 24556655555552 3 578999999987 455666
Q ss_pred HHHHhccceEEEEeecCCCCChhhHHHHHHHHH---h-C-CCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEe
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRK---H-A-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 305 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~---~-~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~i 305 (640)
..++..+|++++|+|++++.+.++ +.+|+.. . . ...|+++|+||+|+.........+.......++. .++++
T Consensus 70 ~~~~~~~d~iilv~D~~~~~Sf~~--l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~ 146 (211)
T cd04111 70 RSYYRNSVGVLLVFDITNRESFEH--VHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGM-KYIET 146 (211)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCC-EEEEE
Confidence 778999999999999998766554 3344433 2 1 2467899999999987555444555555566664 78999
Q ss_pred eccCCCChhHHHHHhccchHHH
Q 006555 306 SAETGLGMTELYEALRPSVEDY 327 (640)
Q Consensus 306 SA~~g~gi~eL~~~I~~~l~~~ 327 (640)
||++|.|++++++.|.+.+.+.
T Consensus 147 Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 147 SARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998877654
No 128
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.81 E-value=4e-19 Score=205.69 Aligned_cols=171 Identities=22% Similarity=0.319 Sum_probs=128.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHH-HHH
Q 006555 152 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTA-GMT 230 (640)
Q Consensus 152 ~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~-~~~ 230 (640)
..++|+++|+||||||||+|+|++.+..++++.++ ||++.....+.+++.++.+|||||+..........+.+. ..+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~g--tT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAG--TTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCC--CCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHH
Confidence 45799999999999999999999998778888888 999998888888999999999999864322111111111 123
Q ss_pred HHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccch-HHH-HHHHHhcCCCCcEEeecc
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSL-AGA-AAESLMLGFGDPIAISAE 308 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~-~~~-~~~~~~~g~~~~i~iSA~ 308 (640)
..+++.+|++++|+|++++.+..+..+...+... ++|+++|+||+|+.+...... ... ...+....+.+++++||+
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i~~~~~~~--~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAk 604 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKVMSMAVDA--GRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAK 604 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECC
Confidence 5668999999999999999998887777766654 789999999999975322111 111 111112234467999999
Q ss_pred CCCChhHHHHHhccchHH
Q 006555 309 TGLGMTELYEALRPSVED 326 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~l~~ 326 (640)
+|.|+++|++.+.+.+++
T Consensus 605 tg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 605 TGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999887654
No 129
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.81 E-value=1.7e-19 Score=165.96 Aligned_cols=162 Identities=19% Similarity=0.236 Sum_probs=126.8
Q ss_pred cCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHH
Q 006555 151 NLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAG 228 (640)
Q Consensus 151 ~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~ 228 (640)
..+.+|.|.|++|||||||+|+++..++...+. .++..|.....+.+++ ..+++|||+|++ ++..
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qyk---aTIgadFltKev~Vd~~~vtlQiWDTAGQE----------RFqs 73 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYK---ATIGADFLTKEVQVDDRSVTLQIWDTAGQE----------RFQS 73 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhc---cccchhheeeEEEEcCeEEEEEEEecccHH----------Hhhh
Confidence 446799999999999999999999877643222 2244555555555555 468999999999 7777
Q ss_pred HHHHHHhccceEEEEeecCCCCChhhHH-H-HHHHHHhC----CCCcEEEEecCCCCCcC--CccchHHHHHHHHhcCCC
Q 006555 229 MTANVLAKTQFAIFMIDVRSGLHPLDLE-V-GKWLRKHA----PQIKPIVAMNKCESLHN--GTGSLAGAAAESLMLGFG 300 (640)
Q Consensus 229 ~~~~~~~~ad~vl~VvD~s~~~~~~~~~-~-~~~L~~~~----~~~p~ilV~NK~Dl~~~--~~~~~~~~~~~~~~~g~~ 300 (640)
+-...++.||.+++|+|+..+-+.+..+ + -++|.... ..-|+|+++||+|+... +.++...+..++...|--
T Consensus 74 Lg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gni 153 (210)
T KOG0394|consen 74 LGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNI 153 (210)
T ss_pred cccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCc
Confidence 7788899999999999999887777644 2 23444432 25799999999999763 557778888999999877
Q ss_pred CcEEeeccCCCChhHHHHHhccchH
Q 006555 301 DPIAISAETGLGMTELYEALRPSVE 325 (640)
Q Consensus 301 ~~i~iSA~~g~gi~eL~~~I~~~l~ 325 (640)
++|++|||.+.||++.|+.+.....
T Consensus 154 pyfEtSAK~~~NV~~AFe~ia~~aL 178 (210)
T KOG0394|consen 154 PYFETSAKEATNVDEAFEEIARRAL 178 (210)
T ss_pred eeEEecccccccHHHHHHHHHHHHH
Confidence 8999999999999999998876543
No 130
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.81 E-value=4.7e-19 Score=169.72 Aligned_cols=163 Identities=23% Similarity=0.259 Sum_probs=118.6
Q ss_pred HHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEE
Q 006555 225 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 304 (640)
Q Consensus 225 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~ 304 (640)
+...++...+++||++++|+|++++....+..+.+.+ .++|.++|+||+|+.++.. .......+... ...++.
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~-~~~vi~ 80 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL----GNKPRIIVLNKADLADPKK--TKKWLKYFESK-GEKVLF 80 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh----cCCCEEEEEehhhcCChHH--HHHHHHHHHhc-CCeEEE
Confidence 5667788999999999999999987776655554433 2579999999999964311 11111222222 336799
Q ss_pred eeccCCCChhHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEeCCCCchHHHHHHHhcCCcee
Q 006555 305 ISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVL 384 (640)
Q Consensus 305 iSA~~g~gi~eL~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKStL~n~l~~~~~~~ 384 (640)
+||+++.|+++|.+.+...++.. .+ . .........++++++|.+|||||||+|+|++.....
T Consensus 81 iSa~~~~gi~~L~~~l~~~l~~~-~~----------------~-~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~ 142 (171)
T cd01856 81 VNAKSGKGVKKLLKAAKKLLKDI-EK----------------L-KAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAK 142 (171)
T ss_pred EECCCcccHHHHHHHHHHHHHHH-hh----------------h-hhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCcee
Confidence 99999999999999988766421 00 0 000112235789999999999999999999887778
Q ss_pred ecCcccceeeeEEEEEEECCeEEEEEEeCCC
Q 006555 385 VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGW 415 (640)
Q Consensus 385 ~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~ 415 (640)
+++.+|+|++.....+. ..+.+|||||+
T Consensus 143 ~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 143 VGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred ecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 88999999987665442 56889999996
No 131
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.81 E-value=2.6e-19 Score=174.69 Aligned_cols=148 Identities=20% Similarity=0.184 Sum_probs=100.9
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|||||||++++++.+.......++++.+.....+.+++. .+.||||||+.+.. .....+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~ 70 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFR----------SVTHAY 70 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHH----------HhhHHH
Confidence 489999999999999999999765322223333344444445566664 67799999953321 122356
Q ss_pred HhhccEEEEEecccHH-----------HH---HHcCCcEEEEEeCCCCCCCccch-HHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 436 LMRAHVVALVLDAEEV-----------RA---VEEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 436 i~~advvllVvDa~~~-----------~~---~~~~~p~Ilv~NK~Dl~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
++.+|++|+|+|+++. .. ...++|+++|+||+|+....... +..+ .+. ...+.
T Consensus 71 ~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~--------~l~----~~~~~ 138 (191)
T cd04112 71 YRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGE--------RLA----KEYGV 138 (191)
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHH--------HHH----HHcCC
Confidence 7789999999999875 11 11368999999999996432211 1111 111 11246
Q ss_pred cEEEeccccCCCHHHHHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDTYQKW 527 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~~~~~ 527 (640)
+++++||++|.|++++|+.+.+.+...
T Consensus 139 ~~~e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 139 PFMETSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 899999999999999999998876543
No 132
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.81 E-value=4.1e-19 Score=169.64 Aligned_cols=145 Identities=17% Similarity=0.166 Sum_probs=97.4
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+.+||+++|.+|||||||+++|........ .|+++.+.. .+..++..+.+|||||+.+. . .....+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~--~~t~g~~~~--~~~~~~~~~~l~Dt~G~~~~---------~-~~~~~~ 73 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTT--IPTVGFNVE--TVTYKNVKFNVWDVGGQDKI---------R-PLWRHY 73 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccc--cCCcccceE--EEEECCEEEEEEECCCCHHH---------H-HHHHHH
Confidence 357999999999999999999986544332 233333322 34457789999999996432 1 123457
Q ss_pred HhhccEEEEEecccHH-----------HHH----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 436 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 436 i~~advvllVvDa~~~-----------~~~----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
++++|++|+|+|+++. ... ..++|++||+||+|+.+..... .+. ..+..........
T Consensus 74 ~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~----~i~----~~~~~~~~~~~~~ 145 (168)
T cd04149 74 YTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPH----EIQ----EKLGLTRIRDRNW 145 (168)
T ss_pred hccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHH----HHH----HHcCCCccCCCcE
Confidence 7899999999999985 111 1368999999999986532211 111 1111000011234
Q ss_pred cEEEeccccCCCHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVID 522 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~ 522 (640)
+++++||++|.|++++|++|.+
T Consensus 146 ~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 146 YVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EEEEeeCCCCCChHHHHHHHhc
Confidence 6899999999999999998854
No 133
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.81 E-value=2.8e-19 Score=169.35 Aligned_cols=145 Identities=24% Similarity=0.260 Sum_probs=100.7
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|||||||++++++... ...+.+++.+.....+..++. .+.+|||||+.+.. .....+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~----------~~~~~~ 68 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHF--VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFS----------AMRDQY 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCcccch----------HHHHHH
Confidence 4899999999999999999997642 333444555555555566664 56799999975432 112346
Q ss_pred HhhccEEEEEecccHH-----------HHH----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 436 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 436 i~~advvllVvDa~~~-----------~~~----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
++.+|++++|+|+++. ... ..++|+++|+||+|+.+...... +.. ....+ ..+.
T Consensus 69 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~--~~~-----~~~~~----~~~~ 137 (164)
T smart00173 69 MRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVST--EEG-----KELAR----QWGC 137 (164)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcH--HHH-----HHHHH----HcCC
Confidence 7789999999999875 111 13689999999999976422110 000 01111 1246
Q ss_pred cEEEeccccCCCHHHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDTYQ 525 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~~~ 525 (640)
+++++||++|.|++++|+.+.+.+.
T Consensus 138 ~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 138 PFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred EEEEeecCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999987654
No 134
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.81 E-value=2.9e-19 Score=170.23 Aligned_cols=150 Identities=23% Similarity=0.300 Sum_probs=107.3
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe-EEEEEEeCCCCcccccCCchhhHHHHHHHHHh
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR-TVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 437 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 437 (640)
.|+++|++|||||||+|+|.+.. ..++..+++|+++..+.+.+++. .+.+|||||+.+..... ..+ ...+.+.+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~-~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~-~~~~~~~~~ 77 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK-PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG--KGL-GHRFLRHIE 77 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC-ccccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc--CCc-hHHHHHHHH
Confidence 58999999999999999999764 46777888898887777777776 99999999985432111 111 123345566
Q ss_pred hccEEEEEecccHH-----------HHH-H-----cCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 438 RAHVVALVLDAEEV-----------RAV-E-----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 438 ~advvllVvDa~~~-----------~~~-~-----~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
.+|++++|+|+++. ..+ . .++|+++|+||+|+.+.....+..+ .........
T Consensus 78 ~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~-----------~~~~~~~~~ 146 (170)
T cd01898 78 RTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLK-----------ELLKELWGK 146 (170)
T ss_pred hCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHH-----------HHHhhCCCC
Confidence 79999999999753 011 1 3689999999999976532211111 111111356
Q ss_pred cEEEeccccCCCHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
+++++||+++.|++++++.+.+.
T Consensus 147 ~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 147 PVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CEEEEecCCCCCHHHHHHHHHhh
Confidence 89999999999999999988753
No 135
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.81 E-value=6.8e-19 Score=165.76 Aligned_cols=142 Identities=25% Similarity=0.274 Sum_probs=99.3
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|||||||+|+|++... ...+.+++.+.....+.+++. .+.+|||||..+. ..+ ...+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~l-~~~~ 69 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY---------SAM-RDQY 69 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcch---------HHH-HHHH
Confidence 6899999999999999999997642 334445555555555666665 4678999996433 112 2357
Q ss_pred HhhccEEEEEecccHH-----------HHH----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 436 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 436 i~~advvllVvDa~~~-----------~~~----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
++.+|++++|+|.++. ... ..++|+++|+||+|+.+.......... .. ...+.
T Consensus 70 ~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~--------~~----~~~~~ 137 (162)
T cd04138 70 MRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQD--------LA----KSYGI 137 (162)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHH--------HH----HHhCC
Confidence 7789999999999864 111 137899999999999763211111111 11 11246
Q ss_pred cEEEeccccCCCHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
+++++||++|.|++++|+++.+.
T Consensus 138 ~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 138 PYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred eEEEecCCCCCCHHHHHHHHHHH
Confidence 89999999999999999998764
No 136
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.81 E-value=2.5e-19 Score=174.67 Aligned_cols=152 Identities=28% Similarity=0.349 Sum_probs=110.4
Q ss_pred HHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHH-----HhcCC-
Q 006555 226 TAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAES-----LMLGF- 299 (640)
Q Consensus 226 ~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~-----~~~g~- 299 (640)
+..+...+++++|++++|+|+++.....+.++ .....++|+++|+||+|+...... ........ ...++
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l----~~~~~~~~~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~ 98 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRL----RLFGGNNPVILVGNKIDLLPKDKN-LVRIKNWLRAKAAAGLGLK 98 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhH----HHhcCCCcEEEEEEchhcCCCCCC-HHHHHHHHHHHHHhhcCCC
Confidence 35667788899999999999987654443333 112237899999999999754321 11111111 22332
Q ss_pred -CCcEEeeccCCCChhHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEeCCCCchHHHHHHHh
Q 006555 300 -GDPIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALL 378 (640)
Q Consensus 300 -~~~i~iSA~~g~gi~eL~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKStL~n~l~ 378 (640)
..++++||++|.|+++|++.|.+.++. ..+++++|.+|||||||+|+|+
T Consensus 99 ~~~i~~vSA~~~~gi~eL~~~l~~~l~~------------------------------~~~~~~~G~~nvGKStliN~l~ 148 (190)
T cd01855 99 PKDVILISAKKGWGVEELINAIKKLAKK------------------------------GGDVYVVGATNVGKSTLINALL 148 (190)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhhc------------------------------CCcEEEEcCCCCCHHHHHHHHH
Confidence 367999999999999999998876531 2479999999999999999999
Q ss_pred cCC--------ceeecCcccceeeeEEEEEEECCeEEEEEEeCCC
Q 006555 379 QED--------RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGW 415 (640)
Q Consensus 379 ~~~--------~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~ 415 (640)
+.. ...++..+|||++.....+. ..+.|+||||+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 149 KKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred HhcccccccccccccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 753 24678889999998766553 25799999995
No 137
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.81 E-value=5.4e-19 Score=168.11 Aligned_cols=149 Identities=29% Similarity=0.373 Sum_probs=103.8
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHH-h
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL-M 437 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i-~ 437 (640)
+|+++|++|||||||+|+|++.. ..+++++++|.+.......+++.++.||||||+.+..... ...+. ..+..++ .
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-~~~~~-~~~~~~~~~ 78 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAK-PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEE-RNTIE-MQAITALAH 78 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC-CccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccC-CchHH-HHHHHHHHh
Confidence 68999999999999999999875 3456678888887777777788899999999985432111 11110 1111122 2
Q ss_pred hccEEEEEecccHH-------------HHHH--cCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcE
Q 006555 438 RAHVVALVLDAEEV-------------RAVE--EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 502 (640)
Q Consensus 438 ~advvllVvDa~~~-------------~~~~--~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 502 (640)
.+|++|+|+|+++. .... .++|+|+|+||+|+.......+ ...+......++
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~-------------~~~~~~~~~~~~ 145 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE-------------IEEEEELEGEEV 145 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH-------------HHHhhhhccCce
Confidence 36999999999752 1112 2789999999999976422111 011122235689
Q ss_pred EEeccccCCCHHHHHHHHHHH
Q 006555 503 VFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 503 v~iSAk~g~gv~~l~~~i~~~ 523 (640)
+++||++|.|++++++++.+.
T Consensus 146 ~~~Sa~~~~gi~~l~~~l~~~ 166 (168)
T cd01897 146 LKISTLTEEGVDEVKNKACEL 166 (168)
T ss_pred EEEEecccCCHHHHHHHHHHH
Confidence 999999999999999998765
No 138
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.81 E-value=5.4e-19 Score=169.82 Aligned_cols=155 Identities=15% Similarity=0.120 Sum_probs=110.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|.+|||||||+.+++..... ..... +..+.....+..++ .++.+|||||+. ++.....
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP--GEYIP--TVFDNYSANVMVDGKPVNLGLWDTAGQE----------DYDRLRP 67 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CcCCC--cceeeeEEEEEECCEEEEEEEEECCCch----------hhhhhhh
Confidence 38999999999999999999976542 11111 33333333444554 578899999987 4445556
Q ss_pred HHHhccceEEEEeecCCCCChhhH--HHHHHHHHhCCCCcEEEEecCCCCCcCC------------ccchHHHHHHHHhc
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNG------------TGSLAGAAAESLML 297 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~L~~~~~~~p~ilV~NK~Dl~~~~------------~~~~~~~~~~~~~~ 297 (640)
.++..+|++|+|+|++++.+..+. .+...+....++.|+++|+||+|+.+.. .+...+....+..+
T Consensus 68 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 147 (174)
T cd01871 68 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 147 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 678999999999999987776653 2444454445578999999999996432 12333444455566
Q ss_pred CCCCcEEeeccCCCChhHHHHHhcc
Q 006555 298 GFGDPIAISAETGLGMTELYEALRP 322 (640)
Q Consensus 298 g~~~~i~iSA~~g~gi~eL~~~I~~ 322 (640)
+...++++||++|.|++++++.+.+
T Consensus 148 ~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 148 GAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred CCcEEEEecccccCCHHHHHHHHHH
Confidence 6446799999999999999998764
No 139
>PLN03118 Rab family protein; Provisional
Probab=99.81 E-value=1.5e-19 Score=179.19 Aligned_cols=148 Identities=20% Similarity=0.209 Sum_probs=102.0
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECC--eEEEEEEeCCCCcccccCCchhhHHHHHH
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 433 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 433 (640)
..+||+++|.+|||||||+++|++.......+..| .+.....+.+++ ..+.||||||+.++. ....
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~----------~~~~ 80 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIG--VDFKIKQLTVGGKRLKLTIWDTAGQERFR----------TLTS 80 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCce--eEEEEEEEEECCEEEEEEEEECCCchhhH----------HHHH
Confidence 45899999999999999999999875433333333 333334455555 467899999965432 1234
Q ss_pred HHHhhccEEEEEecccHH-------H----HH-----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCC
Q 006555 434 KNLMRAHVVALVLDAEEV-------R----AV-----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 497 (640)
Q Consensus 434 ~~i~~advvllVvDa~~~-------~----~~-----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 497 (640)
.+++.+|++|+|+|+++. . .. ..+.|+++|+||+|+........ +.. .... ..
T Consensus 81 ~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~--~~~-----~~~~----~~ 149 (211)
T PLN03118 81 SYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSR--EEG-----MALA----KE 149 (211)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCH--HHH-----HHHH----HH
Confidence 577899999999999875 0 11 13578999999999975432110 000 0111 12
Q ss_pred CCCcEEEeccccCCCHHHHHHHHHHHHHH
Q 006555 498 TGIPVVFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 498 ~~~~~v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
.+++++++||++|.|++++|+.+...+..
T Consensus 150 ~~~~~~e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 150 HGCLFLECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 25689999999999999999999987644
No 140
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.81 E-value=8.4e-19 Score=164.12 Aligned_cols=146 Identities=33% Similarity=0.532 Sum_probs=115.1
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHHh
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 437 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 437 (640)
++|+++|++|+|||||+|++++.....+++.+++|.+.....+.+++.++.+|||||+.+... ..+.....+....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETED--EIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcc--hHHHHHHHHHHHHHh
Confidence 589999999999999999999887777888999999988888888889999999999865521 122222334556777
Q ss_pred hccEEEEEecccHH------HHH--HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEecccc
Q 006555 438 RAHVVALVLDAEEV------RAV--EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALE 509 (640)
Q Consensus 438 ~advvllVvDa~~~------~~~--~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~ 509 (640)
.+|++++|+|+++. ... ..++|+++|+||+|+...... .......+++++||++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~~~------------------~~~~~~~~~~~~Sa~~ 141 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSEL------------------LSLLAGKPIIAISAKT 141 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCcccc------------------ccccCCCceEEEECCC
Confidence 89999999999954 111 357999999999999865321 1123356899999999
Q ss_pred CCCHHHHHHHHHHH
Q 006555 510 GRGRIAVMHQVIDT 523 (640)
Q Consensus 510 g~gv~~l~~~i~~~ 523 (640)
+.|++++++++.+.
T Consensus 142 ~~~v~~l~~~l~~~ 155 (157)
T cd04164 142 GEGLDELKEALLEL 155 (157)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999988764
No 141
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.81 E-value=3.3e-19 Score=169.58 Aligned_cols=144 Identities=20% Similarity=0.207 Sum_probs=98.9
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccce-eeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLT-RDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT-~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
+||+++|++|||||||++++.+... ...++++. .+.....+..++. .+.||||||+.+. . .....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~-~~~~~ 70 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERF---------R-AVTRS 70 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHH---------H-HHHHH
Confidence 6999999999999999999997642 23333332 3333334555654 5689999996432 1 12345
Q ss_pred HHhhccEEEEEecccHH-------HHH-------HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 435 NLMRAHVVALVLDAEEV-------RAV-------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 435 ~i~~advvllVvDa~~~-------~~~-------~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
+++++|++|+|+|+++. ... ..+.|+++|+||+|+....... .+.. ..++...+.
T Consensus 71 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~--~~~~---------~~~~~~~~~ 139 (166)
T cd04122 71 YYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVT--YEEA---------KQFADENGL 139 (166)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcC--HHHH---------HHHHHHcCC
Confidence 77899999999999975 111 2457999999999997653211 0111 111112356
Q ss_pred cEEEeccccCCCHHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
+++++||++|.|++++|..+.+.+
T Consensus 140 ~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 140 LFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 899999999999999999988654
No 142
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.81 E-value=3.1e-20 Score=184.82 Aligned_cols=248 Identities=17% Similarity=0.112 Sum_probs=184.0
Q ss_pred hhHhhcCCChhhHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccccccC-----CCCCccccCCC-CCCc
Q 006555 57 FFSRFLGSPFYDFMCFLLLFVNVSIMYWFSGSLYQVGSSLKCNLLPEVPRGFCGVVQNE-----ALEDTHVEPEP-DGVV 130 (640)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~~~~~-~~~~ 130 (640)
=.++.+.-++++..-.++-++..-+..--+ ..|+..+...|..+++.+.+.+..++. |+++..++.+. +.+
T Consensus 73 ek~r~~~VrvfDr~~~vl~if~q~a~T~ea--rlqvalAempy~~~rl~r~~~hl~r~~g~~v~gsges~id~d~~rll- 149 (410)
T KOG0410|consen 73 EKSRLVRVRVFDRRHTVLQIFEQEAVTAEA--RLQVALAEMPYVGGRLERELQHLRRQSGGQVKGSGESIIDRDIRRLL- 149 (410)
T ss_pred HHhhhcceeeecchhhHHHHHHHHhhhHHH--HHhhhhhcCccccchHHHHHHHHHhcCCCcccCccchHhHHHHHHHH-
Confidence 357888889999999999888877765543 456667788899999988888888765 67777777666 344
Q ss_pred cccccchhhcCCCcccc-------ccccCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEE-CC
Q 006555 131 EDHKVKPLYEKPVDFTK-------IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-GD 202 (640)
Q Consensus 131 ~~~~~~~l~~~l~~~~~-------~~~~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~-~~ 202 (640)
+.+++++++.|.+..+ ......|.|++|||+|+|||||+++|++... ...+. .|.|.|........ .|
T Consensus 150 -r~kea~lrKeL~~vrrkr~~r~gr~~~s~pviavVGYTNaGKsTLikaLT~Aal-~p~dr--LFATLDpT~h~a~Lpsg 225 (410)
T KOG0410|consen 150 -RIKEAQLRKELQRVRRKRQRRVGREGESSPVIAVVGYTNAGKSTLIKALTKAAL-YPNDR--LFATLDPTLHSAHLPSG 225 (410)
T ss_pred -HHHHHHHHHHHHHHHHHHhhhhccccCCCceEEEEeecCccHHHHHHHHHhhhc-Cccch--hheeccchhhhccCCCC
Confidence 5666666666665443 2234568999999999999999999996432 12223 34677776665555 67
Q ss_pred eeEEEEeCCCCccccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHH-HHHHHHHhCCCCc-------EEEEe
Q 006555 203 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKHAPQIK-------PIVAM 274 (640)
Q Consensus 203 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~L~~~~~~~p-------~ilV~ 274 (640)
..+.+.||.||....|.+.+ ..++.+++.+.+||++++|+|+++|.-.++.+ ++..|+.. +.| +|-|-
T Consensus 226 ~~vlltDTvGFisdLP~~Lv--aAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~i--gv~~~pkl~~mieVd 301 (410)
T KOG0410|consen 226 NFVLLTDTVGFISDLPIQLV--AAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQI--GVPSEPKLQNMIEVD 301 (410)
T ss_pred cEEEEeechhhhhhCcHHHH--HHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhc--CCCcHHHHhHHHhhc
Confidence 88999999999988775544 67889999999999999999999988777644 66777765 333 57788
Q ss_pred cCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCChhHHHHHhccchHH
Q 006555 275 NKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 275 NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~gi~eL~~~I~~~l~~ 326 (640)
||+|..+..... ... ..+++||.+|+|++++.+.+...+..
T Consensus 302 nkiD~e~~~~e~--------E~n---~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 302 NKIDYEEDEVEE--------EKN---LDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred cccccccccCcc--------ccC---CccccccccCccHHHHHHHHHHHhhh
Confidence 999976643211 111 25899999999999999988876643
No 143
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.81 E-value=8.5e-19 Score=170.15 Aligned_cols=158 Identities=12% Similarity=0.057 Sum_probs=112.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEEC-C--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG-D--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
+|+++|.+|||||||+++|++..... .... ++.+.....+... + ..+.+|||||++ ++.....
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~--~~~~--t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPE--EYVP--TVFENYVTNIQGPNGKIIELALWDTAGQE----------EYDRLRP 67 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCC--CCCC--eeeeeeEEEEEecCCcEEEEEEEECCCch----------hHHHHHH
Confidence 79999999999999999999876421 1211 3222223334443 2 478999999987 4445556
Q ss_pred HHHhccceEEEEeecCCCCChhhHH--HHHHHHHhCCCCcEEEEecCCCCCcCC----ccchHHHHHHHHhcCCCCcEEe
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDLE--VGKWLRKHAPQIKPIVAMNKCESLHNG----TGSLAGAAAESLMLGFGDPIAI 305 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~~--~~~~L~~~~~~~p~ilV~NK~Dl~~~~----~~~~~~~~~~~~~~g~~~~i~i 305 (640)
.++..+|++++|+|++++.+.++.. +...+....++.|+++|+||+|+.... .....+........+...++++
T Consensus 68 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 147 (187)
T cd04132 68 LSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLEC 147 (187)
T ss_pred HhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEc
Confidence 6789999999999999877666432 233333334578999999999987543 1223344445556666578999
Q ss_pred eccCCCChhHHHHHhccchHH
Q 006555 306 SAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 306 SA~~g~gi~eL~~~I~~~l~~ 326 (640)
||++|.|++++++.+.+.+..
T Consensus 148 Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 148 SAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred cCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999877654
No 144
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.81 E-value=5e-19 Score=165.78 Aligned_cols=146 Identities=30% Similarity=0.413 Sum_probs=109.0
Q ss_pred EEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHHhhcc
Q 006555 361 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAH 440 (640)
Q Consensus 361 ~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad 440 (640)
+++|.+|+|||||+|+|++.....+++.+++|++.......+++..+.+|||||+.+... .........+...++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE--GISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh--HHHHHHHHHHHHHHHhCC
Confidence 578999999999999999887677888999999988888888899999999999865421 011111123445678899
Q ss_pred EEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEeccccC
Q 006555 441 VVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEG 510 (640)
Q Consensus 441 vvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g 510 (640)
++++|+|+.+. .....++|+++|+||+|+.+.... ..... .....+++++||++|
T Consensus 79 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-----------~~~~~----~~~~~~~~~~Sa~~~ 143 (157)
T cd01894 79 VILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE-----------AAEFY----SLGFGEPIPISAEHG 143 (157)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH-----------HHHHH----hcCCCCeEEEecccC
Confidence 99999999764 122357999999999999764211 01111 111236899999999
Q ss_pred CCHHHHHHHHHHH
Q 006555 511 RGRIAVMHQVIDT 523 (640)
Q Consensus 511 ~gv~~l~~~i~~~ 523 (640)
.|++++++++.+.
T Consensus 144 ~gv~~l~~~l~~~ 156 (157)
T cd01894 144 RGIGDLLDAILEL 156 (157)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998764
No 145
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.81 E-value=4e-19 Score=169.28 Aligned_cols=147 Identities=20% Similarity=0.180 Sum_probs=101.0
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
.+||+++|.+|||||||++++++.. +.....+..+.+.....+.+++. .+.+|||||+.+.. .....
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~----------~~~~~ 71 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDS-FNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFR----------TITTA 71 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCc-CCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHH----------HHHHH
Confidence 4799999999999999999999764 22223333334444444556664 67899999964321 12335
Q ss_pred HHhhccEEEEEecccHH-------H----H---HHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 435 NLMRAHVVALVLDAEEV-------R----A---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 435 ~i~~advvllVvDa~~~-------~----~---~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
+++++|++++|+|+++. . . ...+.|+++|+||+|+.+..... .+... +.. ...+.
T Consensus 72 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~-----~~~----~~~~~ 140 (167)
T cd01867 72 YYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVS--KEEGE-----ALA----DEYGI 140 (167)
T ss_pred HhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC--HHHHH-----HHH----HHcCC
Confidence 67899999999999876 1 1 12468999999999997542211 01110 111 12246
Q ss_pred cEEEeccccCCCHHHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDTYQ 525 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~~~ 525 (640)
+++++||++|.|++++|+++.+.+.
T Consensus 141 ~~~~~Sa~~~~~v~~~~~~i~~~~~ 165 (167)
T cd01867 141 KFLETSAKANINVEEAFFTLAKDIK 165 (167)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999987653
No 146
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.80 E-value=3e-19 Score=171.77 Aligned_cols=154 Identities=18% Similarity=0.180 Sum_probs=102.7
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|||||||++++..... ...+.+|..+.....+.+++. .+.||||||+.+.. .. ...+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~-~~~~ 69 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD---------RL-RPLS 69 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchh---------hh-hhhh
Confidence 6899999999999999999997542 334444544444445666774 56799999975432 11 1246
Q ss_pred HhhccEEEEEecccHH-------H-H---H---HcCCcEEEEEeCCCCCCCccchHHHHHH-HHHcHHHHHhhCCCCCC-
Q 006555 436 LMRAHVVALVLDAEEV-------R-A---V---EEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQVTG- 499 (640)
Q Consensus 436 i~~advvllVvDa~~~-------~-~---~---~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~- 499 (640)
++.+|++|+|+|+++. . + . ..+.|+|||+||+|+.+.....+..... .+.+..+.++.++...+
T Consensus 70 ~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~ 149 (175)
T cd01874 70 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKA 149 (175)
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCC
Confidence 7789999999999875 0 1 1 2368999999999986542211111100 01222333333333233
Q ss_pred CcEEEeccccCCCHHHHHHHHHHH
Q 006555 500 IPVVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 500 ~~~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
.+++++||++|.|++++|+.++..
T Consensus 150 ~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 150 VKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHH
Confidence 689999999999999999998764
No 147
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.80 E-value=5.2e-19 Score=172.60 Aligned_cols=157 Identities=15% Similarity=0.153 Sum_probs=113.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|.+|||||||+++++........ .| |..+.....+..++ ..+.+|||+|++ ++..+..
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~-~~---t~~~~~~~~~~~~~~~~~l~i~Dt~G~e----------~~~~l~~ 69 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEY-IP---TVFDNYSAQTAVDGRTVSLNLWDTAGQE----------EYDRLRT 69 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcCC-CC---ceEeeeEEEEEECCEEEEEEEEECCCch----------hhhhhhh
Confidence 58999999999999999999986542211 12 22233333344444 578999999998 5556667
Q ss_pred HHHhccceEEEEeecCCCCChhhHH--HHHHHHHhCCCCcEEEEecCCCCCcCCc------------cchHHHHHHHHhc
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDLE--VGKWLRKHAPQIKPIVAMNKCESLHNGT------------GSLAGAAAESLML 297 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~~--~~~~L~~~~~~~p~ilV~NK~Dl~~~~~------------~~~~~~~~~~~~~ 297 (640)
.+++.||++|+|+|++++.+.++.. +...+....++.|+++|+||+|+.+... +..++....+...
T Consensus 70 ~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 149 (191)
T cd01875 70 LSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQI 149 (191)
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 7899999999999999887776532 3343444456899999999999965421 2223334445556
Q ss_pred CCCCcEEeeccCCCChhHHHHHhccch
Q 006555 298 GFGDPIAISAETGLGMTELYEALRPSV 324 (640)
Q Consensus 298 g~~~~i~iSA~~g~gi~eL~~~I~~~l 324 (640)
+...++++||++|.|++++++.+.+.+
T Consensus 150 ~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 150 HAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 644789999999999999999998755
No 148
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.80 E-value=4.6e-19 Score=168.90 Aligned_cols=156 Identities=19% Similarity=0.180 Sum_probs=104.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEE--CCeeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|.+|||||||+++++...... .... +...+.....+.. ....+.+|||||+.. +.....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~--~~~~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~ 67 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEK--KYVA-TLGVEVHPLDFHTNRGKIRFNVWDTAGQEK----------FGGLRD 67 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCC-ceeeEEEEEEEEECCEEEEEEEEECCCChh----------hccccH
Confidence 389999999999999999998654321 1111 1222222222222 336799999999872 223334
Q ss_pred HHHhccceEEEEeecCCCCChhhH-HHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCC
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 310 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g 310 (640)
.++..+|++++|+|++++.+.... .+.+.+.+...+.|+++|+||+|+..... . ......... ....++++||++|
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~-~-~~~~~~~~~-~~~~~~e~Sa~~~ 144 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKV-K-AKQITFHRK-KNLQYYEISAKSN 144 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccC-C-HHHHHHHHH-cCCEEEEEeCCCC
Confidence 567899999999999987666542 23344444444799999999999974322 1 222222223 3337899999999
Q ss_pred CChhHHHHHhccchH
Q 006555 311 LGMTELYEALRPSVE 325 (640)
Q Consensus 311 ~gi~eL~~~I~~~l~ 325 (640)
.|++++++.|.+.+.
T Consensus 145 ~~v~~~f~~l~~~~~ 159 (166)
T cd00877 145 YNFEKPFLWLARKLL 159 (166)
T ss_pred CChHHHHHHHHHHHH
Confidence 999999999987653
No 149
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.80 E-value=3.2e-19 Score=171.90 Aligned_cols=146 Identities=23% Similarity=0.204 Sum_probs=99.5
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEEC------------CeEEEEEEeCCCCcccccCCc
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ------------GRTVYLVDTAGWLQREKEKGP 424 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~------------~~~~~liDTpG~~~~~~~~~~ 424 (640)
.+||+++|.+|||||||++++.+.. +.....+.++.+.....+.+. ...+.||||||+.+.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------ 76 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNK-FNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERF------ 76 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC-CCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHH------
Confidence 4799999999999999999998764 222333334444444444432 257889999995432
Q ss_pred hhhHHHHHHHHHhhccEEEEEecccHH-----------HHH----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHH
Q 006555 425 ASLSVMQSRKNLMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQE 489 (640)
Q Consensus 425 ~~~~~~~~~~~i~~advvllVvDa~~~-----------~~~----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~ 489 (640)
. .....+++++|++++|+|+++. ... ..+.|+++|+||+|+.+...... +
T Consensus 77 ---~-~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~-----------~ 141 (180)
T cd04127 77 ---R-SLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSE-----------E 141 (180)
T ss_pred ---H-HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCH-----------H
Confidence 1 2234577899999999999876 111 13679999999999975422110 0
Q ss_pred HHhhCCCCCCCcEEEeccccCCCHHHHHHHHHHHH
Q 006555 490 IQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 490 ~~~~~~~~~~~~~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
....++...+++++++||++|.|++++|+.+.+.+
T Consensus 142 ~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 142 QAKALADKYGIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 01111112256899999999999999999998754
No 150
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.80 E-value=1.4e-18 Score=175.99 Aligned_cols=156 Identities=14% Similarity=0.165 Sum_probs=110.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
+|+++|.+|||||||++++++..... .... |+.+.....+.+++ ..+.||||+|.. .+..+...
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~--~y~p--Ti~d~~~k~~~i~~~~~~l~I~Dt~G~~----------~~~~~~~~ 67 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEE--QYTP--TIEDFHRKLYSIRGEVYQLDILDTSGNH----------PFPAMRRL 67 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCC--CCCC--ChhHhEEEEEEECCEEEEEEEEECCCCh----------hhhHHHHH
Confidence 79999999999999999999765432 2222 44466556666666 568899999987 33344455
Q ss_pred HHhccceEEEEeecCCCCChhhH-HHHHHHHHh----------CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCC
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH----------APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGD 301 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~----------~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~ 301 (640)
++..+|++|+|+|+++..+.++. .+.+++... ..++|+|+|+||+|+.....+...+....+.......
T Consensus 68 ~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~ 147 (247)
T cd04143 68 SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCA 147 (247)
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCE
Confidence 78899999999999987666542 233444321 2478999999999997644443333333332221226
Q ss_pred cEEeeccCCCChhHHHHHhccch
Q 006555 302 PIAISAETGLGMTELYEALRPSV 324 (640)
Q Consensus 302 ~i~iSA~~g~gi~eL~~~I~~~l 324 (640)
++++||++|.|++++++.|....
T Consensus 148 ~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 148 YFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHh
Confidence 79999999999999999998644
No 151
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.80 E-value=3.6e-19 Score=173.48 Aligned_cols=145 Identities=19% Similarity=0.206 Sum_probs=100.0
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeE--EEEEEeCCCCcccccCCchhhHHHHHHHHH
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSRKNL 436 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 436 (640)
||+++|.+|||||||+++|++... ...+++++.+.....+.+++.. +.||||||..+. .. ....++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~~-~~~~~~ 68 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF--VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY---------TA-LRDQWI 68 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchHhhEEEEEEECCEEEEEEEEECCCchhh---------HH-HHHHHH
Confidence 589999999999999999996542 2334455544444455666654 778999996433 11 223578
Q ss_pred hhccEEEEEecccHH----------HHH-------HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCC
Q 006555 437 MRAHVVALVLDAEEV----------RAV-------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 499 (640)
Q Consensus 437 ~~advvllVvDa~~~----------~~~-------~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 499 (640)
+.+|++|+|+|.++. ..+ ..+.|+|+|+||+|+........ +....++...+
T Consensus 69 ~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~-----------~~~~~~~~~~~ 137 (190)
T cd04144 69 REGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVST-----------EEGAALARRLG 137 (190)
T ss_pred HhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCH-----------HHHHHHHHHhC
Confidence 899999999999875 111 13689999999999975422111 00111111224
Q ss_pred CcEEEeccccCCCHHHHHHHHHHHHHH
Q 006555 500 IPVVFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 500 ~~~v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
++++++||++|.|++++|+.+.+.+.+
T Consensus 138 ~~~~e~SAk~~~~v~~l~~~l~~~l~~ 164 (190)
T cd04144 138 CEFIEASAKTNVNVERAFYTLVRALRQ 164 (190)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999876543
No 152
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.80 E-value=1.3e-18 Score=165.96 Aligned_cols=157 Identities=18% Similarity=0.142 Sum_probs=111.3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 230 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 230 (640)
..+|+++|.+|||||||++++++...... ..+ +.+.+.....+..++ ..+.+|||||+. ++..+.
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~ 71 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQ-LFH--TIGVEFLNKDLEVDGHFVTLQIWDTAGQE----------RFRSLR 71 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcC-cCC--ceeeEEEEEEEEECCeEEEEEEEeCCChH----------HHHHhH
Confidence 35899999999999999999998654221 112 134444444455555 467899999987 555667
Q ss_pred HHHHhccceEEEEeecCCCCChhhHH-HHHHHHHh-----CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEE
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 304 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~L~~~-----~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~ 304 (640)
..+++.+|++++|+|++++.+.+... +...+... ..+.|+++|+||+|+.. ......+.......++...+++
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e 150 (170)
T cd04116 72 TPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE-RQVSTEEAQAWCRENGDYPYFE 150 (170)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc-cccCHHHHHHHHHHCCCCeEEE
Confidence 77899999999999999876555422 22222221 13679999999999873 3333344455556666657899
Q ss_pred eeccCCCChhHHHHHhccc
Q 006555 305 ISAETGLGMTELYEALRPS 323 (640)
Q Consensus 305 iSA~~g~gi~eL~~~I~~~ 323 (640)
+||++|.|+.++++.+.+.
T Consensus 151 ~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 151 TSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 9999999999999988753
No 153
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.80 E-value=8.6e-19 Score=167.42 Aligned_cols=152 Identities=16% Similarity=0.148 Sum_probs=103.4
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
..+|+++|.+|||||||+++|....... ..|. ++.+. ..+...+.++.+|||||+. ++......
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~--~~~t--~g~~~--~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~ 72 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVT--TIPT--VGFNV--ETVTYKNVKFNVWDVGGQD----------KIRPLWRH 72 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCcc--ccCC--cccce--EEEEECCEEEEEEECCCCH----------HHHHHHHH
Confidence 3699999999999999999998755422 2222 22222 3445577899999999997 45556677
Q ss_pred HHhccceEEEEeecCCCCChhhH--HHHHHHHHh-CCCCcEEEEecCCCCCcCCccchHHHHHHHHh---cC-CCCcEEe
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLM---LG-FGDPIAI 305 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~L~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~---~g-~~~~i~i 305 (640)
++.++|++++|+|+++..+..+. .+.+.+... .++.|+++|+||+|+.... ..++....... .. ...++++
T Consensus 73 ~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~ 150 (168)
T cd04149 73 YYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPS 150 (168)
T ss_pred HhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC--CHHHHHHHcCCCccCCCcEEEEEe
Confidence 89999999999999986555432 122222221 2468999999999986532 12222222111 01 0146899
Q ss_pred eccCCCChhHHHHHhcc
Q 006555 306 SAETGLGMTELYEALRP 322 (640)
Q Consensus 306 SA~~g~gi~eL~~~I~~ 322 (640)
||++|.|+++++++|.+
T Consensus 151 SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 151 CATSGDGLYEGLTWLSS 167 (168)
T ss_pred eCCCCCChHHHHHHHhc
Confidence 99999999999998864
No 154
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.80 E-value=5.4e-19 Score=169.45 Aligned_cols=152 Identities=16% Similarity=0.150 Sum_probs=105.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
.++|+++|.+|||||||+++|++.....+.. |.......+..++.++.+|||||+. .+..+...
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~------t~g~~~~~~~~~~~~l~l~D~~G~~----------~~~~~~~~ 77 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDIDTISP------TLGFQIKTLEYEGYKLNIWDVGGQK----------TLRPYWRN 77 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCC------ccccceEEEEECCEEEEEEECCCCH----------HHHHHHHH
Confidence 4689999999999999999999875432222 2223334455678899999999987 34455667
Q ss_pred HHhccceEEEEeecCCCCChhhH--HHHHHHHH-hCCCCcEEEEecCCCCCcCCccchHHHHHHHHhc----CCCCcEEe
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRK-HAPQIKPIVAMNKCESLHNGTGSLAGAAAESLML----GFGDPIAI 305 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~L~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~----g~~~~i~i 305 (640)
+++.+|++++|+|++++.+..+. .+..++.. ...+.|+++|+||+|+..... ..+....+... ...+++++
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 155 (173)
T cd04154 78 YFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALS--EEEIREALELDKISSHHWRIQPC 155 (173)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCC--HHHHHHHhCccccCCCceEEEec
Confidence 88999999999999986544431 12223222 124789999999999976432 12222222111 11268999
Q ss_pred eccCCCChhHHHHHhcc
Q 006555 306 SAETGLGMTELYEALRP 322 (640)
Q Consensus 306 SA~~g~gi~eL~~~I~~ 322 (640)
||++|.|++++++++.+
T Consensus 156 Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 156 SAVTGEGLLQGIDWLVD 172 (173)
T ss_pred cCCCCcCHHHHHHHHhc
Confidence 99999999999998764
No 155
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.80 E-value=3.1e-19 Score=173.88 Aligned_cols=156 Identities=20% Similarity=0.220 Sum_probs=109.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
+|+++|.+|||||||++++++....... .| +..+.....+..++ ..+.+|||||++ ++......
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~-~~---t~~~~~~~~i~~~~~~~~l~i~Dt~G~~----------~~~~l~~~ 67 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVY-EP---TVFENYVHDIFVDGLHIELSLWDTAGQE----------EFDRLRSL 67 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCcc-CC---cceeeeEEEEEECCEEEEEEEEECCCCh----------hccccccc
Confidence 7999999999999999999987653321 11 22222223344444 578999999997 33334445
Q ss_pred HHhccceEEEEeecCCCCChhhHH--HHHHHHHhCCCCcEEEEecCCCCCcCCc------------cchHHHHHHHHhcC
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLDLE--VGKWLRKHAPQIKPIVAMNKCESLHNGT------------GSLAGAAAESLMLG 298 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~~~--~~~~L~~~~~~~p~ilV~NK~Dl~~~~~------------~~~~~~~~~~~~~g 298 (640)
++..+|++++|+|+++..+.+..+ +...+....++.|+++|+||+|+..... ...++....+...+
T Consensus 68 ~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (189)
T cd04134 68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRIN 147 (189)
T ss_pred cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 788999999999999887776532 4445555556889999999999976432 11222333344455
Q ss_pred CCCcEEeeccCCCChhHHHHHhccch
Q 006555 299 FGDPIAISAETGLGMTELYEALRPSV 324 (640)
Q Consensus 299 ~~~~i~iSA~~g~gi~eL~~~I~~~l 324 (640)
...++++||++|.|++++++.+.+.+
T Consensus 148 ~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 148 ALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred CCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 33679999999999999999988755
No 156
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=5.1e-19 Score=192.78 Aligned_cols=162 Identities=21% Similarity=0.242 Sum_probs=121.1
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHHh
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 437 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 437 (640)
..|+|||.||+|||||+|+|++.. ..++++++||+++..+.+.+++.++.||||||+.+..... ..+ ....+++++
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g--~gL-g~~fLrhie 235 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEG--KGL-GLDFLRHIE 235 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEECCeEEEEEECCCCccccchh--hHH-HHHHHHHHH
Confidence 579999999999999999999764 5678999999999999999999999999999987542111 111 134567888
Q ss_pred hccEEEEEecccH------H---------HH--------------HHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHH
Q 006555 438 RAHVVALVLDAEE------V---------RA--------------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQ 488 (640)
Q Consensus 438 ~advvllVvDa~~------~---------~~--------------~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~ 488 (640)
++|++|+|+|+++ + +. ...++|+|||+||+|+.+... ..+.+. .
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e---l~e~l~----~ 308 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE---LAEFVR----P 308 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH---HHHHHH----H
Confidence 9999999999963 1 01 113689999999999975421 111111 1
Q ss_pred HHHhhCCCCCCCcEEEeccccCCCHHHHHHHHHHHHHHHhcCCChHH
Q 006555 489 EIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSR 535 (640)
Q Consensus 489 ~~~~~~~~~~~~~~v~iSAk~g~gv~~l~~~i~~~~~~~~~~i~t~~ 535 (640)
.+.. .+.++++|||+++.|++++++++.+.+.......++..
T Consensus 309 ~l~~-----~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~~~~~~ 350 (500)
T PRK12296 309 ELEA-----RGWPVFEVSAASREGLRELSFALAELVEEARAAEPEAE 350 (500)
T ss_pred HHHH-----cCCeEEEEECCCCCCHHHHHHHHHHHHHhhhcccCccc
Confidence 1211 14689999999999999999999999887765554433
No 157
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.80 E-value=4.5e-19 Score=175.52 Aligned_cols=170 Identities=22% Similarity=0.294 Sum_probs=131.9
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccc--hHHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGS--ILDRTAGMT 230 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~--~~~~~~~~~ 230 (640)
...|+++|.||||||||.|.++|.+++.|+..+. ||+....+.+.-+..++.+.||||+........ ......+-.
T Consensus 72 ~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~--TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 72 SLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVH--TTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred EEEEEEEcCCCcchhhhhhHhhCCcccccccccc--ceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 4689999999999999999999999999999887 999999999999999999999999996543211 111223345
Q ss_pred HHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCcc-------------c--hHHHHHHHH
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTG-------------S--LAGAAAESL 295 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~-------------~--~~~~~~~~~ 295 (640)
+.++..||+|++|+|+++.-.+....++..+++. .+.|.|+|.||+|....... . ..+..+.+.
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~ 228 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFT 228 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhc
Confidence 6789999999999999976566666777777775 47899999999998765421 0 111222222
Q ss_pred hc-------------CCCCcEEeeccCCCChhHHHHHhccchH
Q 006555 296 ML-------------GFGDPIAISAETGLGMTELYEALRPSVE 325 (640)
Q Consensus 296 ~~-------------g~~~~i~iSA~~g~gi~eL~~~I~~~l~ 325 (640)
.. +|.++|.+||+.|+||++|.++|....+
T Consensus 229 ~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 229 DVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred cCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 22 2556899999999999999999987654
No 158
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.80 E-value=1.7e-18 Score=165.75 Aligned_cols=156 Identities=17% Similarity=0.214 Sum_probs=110.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
+|++||.+|||||||+++++++.... .. .+++..+.....+..++ ..+.+|||||++ ++......
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~--~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~ 68 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDK--NY-KATIGVDFEMERFEILGVPFSLQLWDTAGQE----------RFKCIAST 68 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC--CC-CCceeeEEEEEEEEECCEEEEEEEEeCCChH----------HHHhhHHH
Confidence 79999999999999999999875421 11 11244455445555555 579999999997 55566778
Q ss_pred HHhccceEEEEeecCCCCChhhHHHHHHHHH---h-CC-CCcEEEEecCCCCCcCCcc--chHHHHHHHHhcCCCCcEEe
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRK---H-AP-QIKPIVAMNKCESLHNGTG--SLAGAAAESLMLGFGDPIAI 305 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~---~-~~-~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~g~~~~i~i 305 (640)
+++.+|++++|+|+++..+... +.+|+.. . .+ ..|+++|+||+|+.+.... ..+........++. +++++
T Consensus 69 ~~~~ad~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~e~ 145 (170)
T cd04108 69 YYRGAQAIIIVFDLTDVASLEH--TRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQA-EYWSV 145 (170)
T ss_pred HhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCC-eEEEE
Confidence 8999999999999987544443 2334432 2 22 3568999999998654331 12223334455555 67999
Q ss_pred eccCCCChhHHHHHhccchHH
Q 006555 306 SAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 306 SA~~g~gi~eL~~~I~~~l~~ 326 (640)
||++|.|++++++.|...+.+
T Consensus 146 Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 146 SALSGENVREFFFRVAALTFE 166 (170)
T ss_pred ECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999876643
No 159
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.80 E-value=1.3e-18 Score=164.24 Aligned_cols=156 Identities=19% Similarity=0.188 Sum_probs=110.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
++|+++|.+|||||||+++++..... ....+ ++.+........++ ..+.+|||||+. ++.....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~ 66 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV--EDYEP--TKADSYRKKVVLDGEDVQLNILDTAGQE----------DYAAIRD 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc--cccCC--cchhhEEEEEEECCEEEEEEEEECCChh----------hhhHHHH
Confidence 48999999999999999999976542 22222 44444444445544 579999999987 3445556
Q ss_pred HHHhccceEEEEeecCCCCChhh-HHHHHHHHHh--CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeecc
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~L~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~ 308 (640)
.+++.+|.+++|+|++++.+... ..+...+... ..++|+++|+||+|+.................++. +++++||+
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 145 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGV-PYVETSAK 145 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCC-eEEEeeCC
Confidence 78899999999999987654433 1222222222 24799999999999976433333333444455665 78999999
Q ss_pred CCCChhHHHHHhccch
Q 006555 309 TGLGMTELYEALRPSV 324 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~l 324 (640)
+|.|++++++.+.+.+
T Consensus 146 ~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 146 TRQNVEKAFYDLVREI 161 (164)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987655
No 160
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.80 E-value=1.6e-18 Score=163.17 Aligned_cols=156 Identities=21% Similarity=0.243 Sum_probs=110.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|.+|||||||+|+|++....... .+ +++.+.....+...+ ..+.+|||||.. .+.....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKH-ES--TTQASFFQKTVNIGGKRIDLAIWDTAGQE----------RYHALGP 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc-CC--ccceeEEEEEEEECCEEEEEEEEECCchH----------HHHHhhH
Confidence 37999999999999999999987653311 12 133444444555544 468999999986 4445566
Q ss_pred HHHhccceEEEEeecCCCCChhhHH-HHHHHHHh-CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccC
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 309 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~L~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~ 309 (640)
.++..+|++++|+|.+++.+.++.. +.+.++.. ..++|+++|+||+|+..................+. .++++||++
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~ 146 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGA-KHFETSAKT 146 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 6788999999999998876555422 22333333 23689999999999986544333333444455565 679999999
Q ss_pred CCChhHHHHHhccc
Q 006555 310 GLGMTELYEALRPS 323 (640)
Q Consensus 310 g~gi~eL~~~I~~~ 323 (640)
|.|++++++.+.+.
T Consensus 147 ~~gi~~~~~~l~~~ 160 (162)
T cd04123 147 GKGIEELFLSLAKR 160 (162)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998754
No 161
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.80 E-value=8.1e-19 Score=162.61 Aligned_cols=137 Identities=25% Similarity=0.335 Sum_probs=108.3
Q ss_pred HHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeec
Q 006555 228 GMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 307 (640)
Q Consensus 228 ~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA 307 (640)
......+.++|++++|+|++++.+..+.++.+++.....++|+++|+||+|+.++.. .......+...+. .++++||
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~-~ii~iSa 79 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGI-VVVFFSA 79 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCC-eEEEEEe
Confidence 456788999999999999999988888888888876545789999999999965321 1223334445554 7899999
Q ss_pred cCCCChhHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEeCCCCchHHHHHHHhcCCceeecC
Q 006555 308 ETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGP 387 (640)
Q Consensus 308 ~~g~gi~eL~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~ 387 (640)
++|.+ +++++|.+|||||||+|+|++.....++.
T Consensus 80 ~~~~~----------------------------------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~ 113 (141)
T cd01857 80 LKENA----------------------------------------------TIGLVGYPNVGKSSLINALVGKKKVSVSA 113 (141)
T ss_pred cCCCc----------------------------------------------EEEEECCCCCCHHHHHHHHhCCCceeeCC
Confidence 86543 58999999999999999999988778899
Q ss_pred cccceeeeEEEEEEECCeEEEEEEeCCCC
Q 006555 388 EAGLTRDSVRVHFEYQGRTVYLVDTAGWL 416 (640)
Q Consensus 388 ~~gtT~d~~~~~~~~~~~~~~liDTpG~~ 416 (640)
.+|+|++.... ..++ .+.||||||+.
T Consensus 114 ~~~~~~~~~~~--~~~~-~~~i~DtpG~~ 139 (141)
T cd01857 114 TPGKTKHFQTI--FLTP-TITLCDCPGLV 139 (141)
T ss_pred CCCcccceEEE--EeCC-CEEEEECCCcC
Confidence 99999986543 3333 68999999974
No 162
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.80 E-value=4.9e-19 Score=176.09 Aligned_cols=147 Identities=22% Similarity=0.239 Sum_probs=102.3
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECC---eEEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG---RTVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
+||+++|.+|||||||+++|++.. +.....+.++.|.....+.+++ ..+.||||||+..+. .....
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~-~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~----------~l~~~ 69 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEG-FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG----------KMLDK 69 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH----------HHHHH
Confidence 589999999999999999999764 3333445555676666666643 578899999963321 12335
Q ss_pred HHhhccEEEEEecccHH----------HHH-------HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCC
Q 006555 435 NLMRAHVVALVLDAEEV----------RAV-------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 497 (640)
Q Consensus 435 ~i~~advvllVvDa~~~----------~~~-------~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 497 (640)
+++.+|++|+|+|+++. ..+ ..+.|+|+|+||+|+.+.+... .+....++..
T Consensus 70 ~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~-----------~~~~~~~~~~ 138 (215)
T cd04109 70 YIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVK-----------DDKHARFAQA 138 (215)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccC-----------HHHHHHHHHH
Confidence 67899999999999975 001 1235799999999997542211 1111111122
Q ss_pred CCCcEEEeccccCCCHHHHHHHHHHHHHH
Q 006555 498 TGIPVVFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 498 ~~~~~v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
.+.+++++||++|.|++++|+.+.+.+..
T Consensus 139 ~~~~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 139 NGMESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35689999999999999999999887654
No 163
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.80 E-value=8e-19 Score=164.83 Aligned_cols=153 Identities=27% Similarity=0.354 Sum_probs=109.8
Q ss_pred EEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHHH--h
Q 006555 158 IIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL--A 235 (640)
Q Consensus 158 lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~--~ 235 (640)
|+|++|||||||+|++++.. ..++..++ +|.+.....+.+.+..+.+|||||+........ . ......++ .
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~--~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~---~~~~~~~~~~~ 73 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPG--VTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSE-D---EKVARDFLLGE 73 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCC--cccccceEEEeeCCeEEEEEECCCccccCCCCh-h---HHHHHHHhcCC
Confidence 58999999999999999875 44555666 888888888888889999999999974332110 0 11223334 4
Q ss_pred ccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCChhH
Q 006555 236 KTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 315 (640)
Q Consensus 236 ~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~gi~e 315 (640)
.+|++++|+|+++... ...+...+.+. ++|+++|+||+|+......... .......++. +++++||.+|.|+++
T Consensus 74 ~~d~vi~v~d~~~~~~--~~~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~-~~~~iSa~~~~~~~~ 147 (158)
T cd01879 74 KPDLIVNVVDATNLER--NLYLTLQLLEL--GLPVVVALNMIDEAEKRGIKID-LDKLSELLGV-PVVPTSARKGEGIDE 147 (158)
T ss_pred CCcEEEEEeeCCcchh--HHHHHHHHHHc--CCCEEEEEehhhhcccccchhh-HHHHHHhhCC-CeEEEEccCCCCHHH
Confidence 9999999999986432 22344444444 7899999999999765432221 2223344455 789999999999999
Q ss_pred HHHHhccc
Q 006555 316 LYEALRPS 323 (640)
Q Consensus 316 L~~~I~~~ 323 (640)
+++.+...
T Consensus 148 l~~~l~~~ 155 (158)
T cd01879 148 LKDAIAEL 155 (158)
T ss_pred HHHHHHHH
Confidence 99988764
No 164
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.80 E-value=5.3e-19 Score=167.74 Aligned_cols=145 Identities=21% Similarity=0.273 Sum_probs=101.1
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
.+||+++|.+|||||||++++++... .....+.++.+.....+..++. .+.+|||||+.+. . .....
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~-~~~~~ 71 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEF-NLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERY---------R-AITSA 71 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHH---------H-HHHHH
Confidence 36999999999999999999997653 3334455555555556666664 6789999996432 1 12235
Q ss_pred HHhhccEEEEEecccHH-------HH-------HHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 435 NLMRAHVVALVLDAEEV-------RA-------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 435 ~i~~advvllVvDa~~~-------~~-------~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
+++.+|++|+|+|+++. .. ...++|+++|+||+|+....... .+... .++...++
T Consensus 72 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~--~~~~~---------~~~~~~~~ 140 (165)
T cd01868 72 YYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP--TEEAK---------AFAEKNGL 140 (165)
T ss_pred HHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCC--HHHHH---------HHHHHcCC
Confidence 67789999999999875 11 11358999999999987542211 01111 11112356
Q ss_pred cEEEeccccCCCHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
+++++||++|.|++++|+.+...
T Consensus 141 ~~~~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 141 SFIETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 89999999999999999998764
No 165
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=9.5e-19 Score=154.78 Aligned_cols=163 Identities=21% Similarity=0.278 Sum_probs=129.5
Q ss_pred cCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEEC--CeeEEEEeCCCCccccCccchHHHHHH
Q 006555 151 NLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAG 228 (640)
Q Consensus 151 ~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~ 228 (640)
+..+++.|+|.+.||||||+-+.++....... ..++..+....++.-. ..++++|||+|++ +...
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~af---vsTvGidFKvKTvyr~~kRiklQiwDTagqE----------ryrt 85 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAF---VSTVGIDFKVKTVYRSDKRIKLQIWDTAGQE----------RYRT 85 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccce---eeeeeeeEEEeEeeecccEEEEEEEecccch----------hhhH
Confidence 44579999999999999999999987652211 1124445554444333 3579999999999 6778
Q ss_pred HHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHh----CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEE
Q 006555 229 MTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 304 (640)
Q Consensus 229 ~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~----~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~ 304 (640)
.+..+++.|+.+|+++|+++..+... +-.|.... +.+.|+|+|+||||+..++.+..+........+|+ +.|+
T Consensus 86 iTTayyRgamgfiLmyDitNeeSf~s--vqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf-efFE 162 (193)
T KOG0093|consen 86 ITTAYYRGAMGFILMYDITNEESFNS--VQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF-EFFE 162 (193)
T ss_pred HHHHHhhccceEEEEEecCCHHHHHH--HHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhCh-HHhh
Confidence 88999999999999999997655553 33444332 45899999999999999998888989999999999 9999
Q ss_pred eeccCCCChhHHHHHhccchHHHHh
Q 006555 305 ISAETGLGMTELYEALRPSVEDYML 329 (640)
Q Consensus 305 iSA~~g~gi~eL~~~I~~~l~~~~~ 329 (640)
+||+.+.|+.++++.+...+.+.+.
T Consensus 163 tSaK~NinVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 163 TSAKENINVKQVFERLVDIICDKMS 187 (193)
T ss_pred hcccccccHHHHHHHHHHHHHHHhh
Confidence 9999999999999999988876543
No 166
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.80 E-value=1.3e-18 Score=168.32 Aligned_cols=158 Identities=13% Similarity=0.146 Sum_probs=109.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|.+|||||||++++++...... ..| ++..+.....+..++ ..+.+|||+|.. ++..+..
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~~--T~g~~~~~~~i~~~~~~~~l~iwDt~G~~----------~~~~~~~ 67 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDED-YIQ--TLGVNFMEKTISIRGTEITFSIWDLGGQR----------EFINMLP 67 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-CCC--ccceEEEEEEEEECCEEEEEEEEeCCCch----------hHHHhhH
Confidence 3799999999999999999998754321 112 233455445566666 578999999997 4555666
Q ss_pred HHHhccceEEEEeecCCCCChhhH-HHHHHHHHhCCCCcEEEEecCCCCCcCCc-----cchHHHHHHHHhcCCCCcEEe
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGT-----GSLAGAAAESLMLGFGDPIAI 305 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~-----~~~~~~~~~~~~~g~~~~i~i 305 (640)
.++++||++++|+|++++.+..+. ++.+.+++..+..+.|+|+||+|+..+.. ....+....+...+. .++++
T Consensus 68 ~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~e~ 146 (182)
T cd04128 68 LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKA-PLIFC 146 (182)
T ss_pred HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcCC-EEEEE
Confidence 789999999999999987776652 23333433322333478999999963211 111222333445564 78999
Q ss_pred eccCCCChhHHHHHhccchH
Q 006555 306 SAETGLGMTELYEALRPSVE 325 (640)
Q Consensus 306 SA~~g~gi~eL~~~I~~~l~ 325 (640)
||++|.|++++++.+.+.+.
T Consensus 147 SAk~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 147 STSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999987654
No 167
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.80 E-value=9.4e-19 Score=201.74 Aligned_cols=156 Identities=25% Similarity=0.300 Sum_probs=117.7
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 436 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 436 (640)
.++|+++|+||||||||+|+|+|.. ..+++++|+|++...+.+.+++.++.+|||||+++........+.....+..++
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~-~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 4689999999999999999999875 578999999999999999999999999999999876321110011111122333
Q ss_pred --hhccEEEEEecccHH--------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEec
Q 006555 437 --MRAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTS 506 (640)
Q Consensus 437 --~~advvllVvDa~~~--------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iS 506 (640)
..+|++++|+|+++. +..+.++|+++|+||+|+.+........+.+. + ..++|++++|
T Consensus 82 ~~~~aD~vI~VvDat~ler~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~--------~----~LG~pVvpiS 149 (772)
T PRK09554 82 LSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALS--------A----RLGCPVIPLV 149 (772)
T ss_pred hccCCCEEEEEecCCcchhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHH--------H----HhCCCEEEEE
Confidence 479999999999975 34467899999999999875533322222221 1 2367999999
Q ss_pred cccCCCHHHHHHHHHHHHH
Q 006555 507 ALEGRGRIAVMHQVIDTYQ 525 (640)
Q Consensus 507 Ak~g~gv~~l~~~i~~~~~ 525 (640)
|++|+|++++.+.+.+..+
T Consensus 150 A~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 150 STRGRGIEALKLAIDRHQA 168 (772)
T ss_pred eecCCCHHHHHHHHHHhhh
Confidence 9999999999999887653
No 168
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.80 E-value=1.2e-18 Score=180.66 Aligned_cols=167 Identities=22% Similarity=0.284 Sum_probs=123.6
Q ss_pred HHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEE
Q 006555 225 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 304 (640)
Q Consensus 225 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~ 304 (640)
+..++....+..||+||+|+|++.+.+..+..+.+.+. ++|.++|+||+|+.+... .......+...+. .++.
T Consensus 13 k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~----~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~-~vi~ 85 (287)
T PRK09563 13 KARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG----NKPRLLILNKSDLADPEV--TKKWIEYFEEQGI-KALA 85 (287)
T ss_pred HHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC----CCCEEEEEEchhcCCHHH--HHHHHHHHHHcCC-eEEE
Confidence 45567788999999999999999988877766555442 689999999999864311 1122222333343 6799
Q ss_pred eeccCCCChhHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEeCCCCchHHHHHHHhcCCcee
Q 006555 305 ISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVL 384 (640)
Q Consensus 305 iSA~~g~gi~eL~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKStL~n~l~~~~~~~ 384 (640)
+||+++.|+++|.+.+.+.+++...+.. ........++++++|.||||||||+|+|++.....
T Consensus 86 vSa~~~~gi~~L~~~l~~~l~~~~~~~~-----------------~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~ 148 (287)
T PRK09563 86 INAKKGQGVKKILKAAKKLLKEKNERRK-----------------AKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAK 148 (287)
T ss_pred EECCCcccHHHHHHHHHHHHHHHHhhhh-----------------hcccCcCceEEEEECCCCCCHHHHHHHHhcCCccc
Confidence 9999999999999998887755311100 00011245799999999999999999999988889
Q ss_pred ecCcccceeeeEEEEEEECCeEEEEEEeCCCCcc
Q 006555 385 VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 418 (640)
Q Consensus 385 ~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~ 418 (640)
+++.+|+|++..... . +..+.|+||||+...
T Consensus 149 ~~~~~g~T~~~~~~~--~-~~~~~l~DtPGi~~~ 179 (287)
T PRK09563 149 TGNRPGVTKAQQWIK--L-GKGLELLDTPGILWP 179 (287)
T ss_pred cCCCCCeEEEEEEEE--e-CCcEEEEECCCcCCC
Confidence 999999999975432 2 456899999999755
No 169
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.80 E-value=1.5e-18 Score=169.29 Aligned_cols=158 Identities=17% Similarity=0.190 Sum_probs=109.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCe--eEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
+|+++|.+|||||||++++++.+... ..+.. ++..+.....+..++. .+.+|||||.. ++......
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~-~~~~~-t~~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~ 69 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLV-GPYQN-TIGAAFVAKRMVVGERVVTLGIWDTAGSE----------RYEAMSRI 69 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCC-cCccc-ceeeEEEEEEEEECCEEEEEEEEECCCch----------hhhhhhHh
Confidence 79999999999999999999876431 11221 1222333345556654 56799999986 33344556
Q ss_pred HHhccceEEEEeecCCCCChhh-HHHHHHHHHhCCCCcEEEEecCCCCCcCC----ccchHHHHHHHHhcCCCCcEEeec
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHAPQIKPIVAMNKCESLHNG----TGSLAGAAAESLMLGFGDPIAISA 307 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~-~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~----~~~~~~~~~~~~~~g~~~~i~iSA 307 (640)
++..+|++++|+|+++..+.++ ..+.+.++...++.|+++|+||+|+.... .....+........+. .++++||
T Consensus 70 ~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa 148 (193)
T cd04118 70 YYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKA-QHFETSS 148 (193)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCC-eEEEEeC
Confidence 7889999999999988655543 23444454444578999999999986432 1112223333444454 6799999
Q ss_pred cCCCChhHHHHHhccchH
Q 006555 308 ETGLGMTELYEALRPSVE 325 (640)
Q Consensus 308 ~~g~gi~eL~~~I~~~l~ 325 (640)
++|.|++++++.+.+.+-
T Consensus 149 ~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 149 KTGQNVDELFQKVAEDFV 166 (193)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987664
No 170
>PRK04213 GTP-binding protein; Provisional
Probab=99.80 E-value=1.5e-18 Score=170.49 Aligned_cols=162 Identities=29% Similarity=0.440 Sum_probs=106.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccC-ccchHHHHHHHH
Q 006555 152 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEAT-SGSILDRTAGMT 230 (640)
Q Consensus 152 ~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~-~~~~~~~~~~~~ 230 (640)
..++|+++|++|||||||+|+|++... .++..++ +|++... ..++ .+.+|||||+..... .....+++...+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~--~t~~~~~--~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPG--VTRKPNH--YDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCc--eeeCceE--Eeec--ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 356999999999999999999998763 3455666 7776543 3333 699999999742211 111122333333
Q ss_pred HHHH----hccceEEEEeecCCCCC-----------hhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHH
Q 006555 231 ANVL----AKTQFAIFMIDVRSGLH-----------PLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESL 295 (640)
Q Consensus 231 ~~~~----~~ad~vl~VvD~s~~~~-----------~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~ 295 (640)
..++ ..++++++|+|.+.... ..+.++.+.+... ++|+++|+||+|+..... ........
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~p~iiv~NK~Dl~~~~~---~~~~~~~~ 155 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL--GIPPIVAVNKMDKIKNRD---EVLDEIAE 155 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc--CCCeEEEEECccccCcHH---HHHHHHHH
Confidence 3333 45679999999865321 1223455555544 789999999999865431 11222223
Q ss_pred hcCC--------CCcEEeeccCCCChhHHHHHhccchHH
Q 006555 296 MLGF--------GDPIAISAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 296 ~~g~--------~~~i~iSA~~g~gi~eL~~~I~~~l~~ 326 (640)
.++. ..++++||++| |++++++.|.+.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 156 RLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 3443 14699999999 999999999876643
No 171
>PRK00089 era GTPase Era; Reviewed
Probab=99.80 E-value=7.5e-19 Score=183.08 Aligned_cols=157 Identities=27% Similarity=0.379 Sum_probs=116.8
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 436 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 436 (640)
.-.|+++|+||||||||+|+|+|.....+++.++||++...+....++.++.+|||||+.+.... ........+..++
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~--l~~~~~~~~~~~~ 82 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRA--LNRAMNKAAWSSL 82 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhH--HHHHHHHHHHHHH
Confidence 34699999999999999999999988899999999999887776666789999999998654311 1222233455678
Q ss_pred hhccEEEEEecccHH---------HHH-HcCCcEEEEEeCCCCCCC-ccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEe
Q 006555 437 MRAHVVALVLDAEEV---------RAV-EEGRGLVVIVNKMDLLSG-RQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFT 505 (640)
Q Consensus 437 ~~advvllVvDa~~~---------~~~-~~~~p~Ilv~NK~Dl~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~i 505 (640)
..+|++++|+|+++. ..+ ..+.|+++|+||+|+... .......+ .+... ....+++++
T Consensus 83 ~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~--------~l~~~---~~~~~i~~i 151 (292)
T PRK00089 83 KDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLE--------ELSEL---MDFAEIVPI 151 (292)
T ss_pred hcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHH--------HHHhh---CCCCeEEEe
Confidence 899999999999873 111 236899999999999743 11111111 11111 224679999
Q ss_pred ccccCCCHHHHHHHHHHHHHH
Q 006555 506 SALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 506 SAk~g~gv~~l~~~i~~~~~~ 526 (640)
||++|.|++++++.+.+.+..
T Consensus 152 SA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 152 SALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred cCCCCCCHHHHHHHHHHhCCC
Confidence 999999999999999887643
No 172
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.80 E-value=5.9e-19 Score=167.68 Aligned_cols=152 Identities=21% Similarity=0.201 Sum_probs=105.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCce---eecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREA---LVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~---~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
+|+++|.+|||||||+|+|++.... ....... .|.......+.+++.++.+|||||+. ++..+..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKIT--PTVGLNIGTIEVGNARLKFWDLGGQE----------SLRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccC--CccccceEEEEECCEEEEEEECCCCh----------hhHHHHH
Confidence 4899999999999999999875321 1111222 45555556777788999999999997 4455667
Q ss_pred HHHhccceEEEEeecCCCCChhhHHHHHHHHHh-----CCCCcEEEEecCCCCCcCCccchHHHHHHHHh----cCC--C
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLM----LGF--G 300 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~-----~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~----~g~--~ 300 (640)
.++..+|++++|+|++++.+..+ ...++... ..+.|+++|+||+|+..... ..+....+.. .+. .
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~~~--~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~ 144 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFEE--SKSALEKVLRNEALEGVPLLILANKQDLPDALS--VEEIKEVFQDKAEEIGRRDC 144 (167)
T ss_pred HHhCCCCEEEEEEECchHHHHHH--HHHHHHHHHhChhhcCCCEEEEEEccccccCCC--HHHHHHHhccccccccCCce
Confidence 78999999999999987543332 22232221 24789999999999866422 1222222211 121 2
Q ss_pred CcEEeeccCCCChhHHHHHhcc
Q 006555 301 DPIAISAETGLGMTELYEALRP 322 (640)
Q Consensus 301 ~~i~iSA~~g~gi~eL~~~I~~ 322 (640)
+++++||++|.|+++++++|.+
T Consensus 145 ~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 145 LVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EEEEeeCCCCcCHHHHHHHHhc
Confidence 5799999999999999998864
No 173
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.80 E-value=1.4e-18 Score=169.90 Aligned_cols=150 Identities=21% Similarity=0.276 Sum_probs=105.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecC---------------CCCCceeeeeEEEEEEECCeeEEEEeCCCCccccC
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYN---------------TPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEAT 218 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~---------------~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 218 (640)
.+|+++|.+|||||||+|+|++........ ..| +|.+.....+..++.++.+|||||+.
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g--~t~~~~~~~~~~~~~~~~l~DtpG~~---- 76 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERG--ITILAKNTAVTYKDTKINIVDTPGHA---- 76 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcc--cccccceeEEEECCEEEEEEECCCcH----
Confidence 489999999999999999999632111111 123 56666666677788999999999997
Q ss_pred ccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccc-hHHHHHHHHh-
Q 006555 219 SGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS-LAGAAAESLM- 296 (640)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~- 296 (640)
++......+++.+|++++|+|++++.......++..+... ++|+++|+||+|+....... ..+....+..
T Consensus 77 ------~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 148 (194)
T cd01891 77 ------DFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALEL--GLKPIVVINKIDRPDARPEEVVDEVFDLFIEL 148 (194)
T ss_pred ------HHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHc--CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 5666778889999999999999986555444444444443 78999999999997543211 1122222222
Q ss_pred ------cCCCCcEEeeccCCCChhHHHH
Q 006555 297 ------LGFGDPIAISAETGLGMTELYE 318 (640)
Q Consensus 297 ------~g~~~~i~iSA~~g~gi~eL~~ 318 (640)
.++ +++++||++|.|+.++.+
T Consensus 149 ~~~~~~~~~-~iv~~Sa~~g~~~~~~~~ 175 (194)
T cd01891 149 GATEEQLDF-PVLYASAKNGWASLNLED 175 (194)
T ss_pred CCccccCcc-CEEEeehhcccccccccc
Confidence 233 679999999988865533
No 174
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.80 E-value=9.2e-19 Score=165.26 Aligned_cols=149 Identities=21% Similarity=0.244 Sum_probs=100.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCc--eeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRRE--ALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~--~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
+|+++|.+|||||||+++|++... ....++.+ . ........+.++.+|||||.. ++......
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g--~----~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~ 64 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVG--F----NVESFEKGNLSFTAFDMSGQG----------KYRGLWEH 64 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccc--c----ceEEEEECCEEEEEEECCCCH----------hhHHHHHH
Confidence 489999999999999999998642 22222222 2 223344577899999999987 45566677
Q ss_pred HHhccceEEEEeecCCCCChhhH-HHHH-HHHHh---CCCCcEEEEecCCCCCcCCccchHHHHHHHHhc---C-C-CCc
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLDL-EVGK-WLRKH---APQIKPIVAMNKCESLHNGTGSLAGAAAESLML---G-F-GDP 302 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~-~L~~~---~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~---g-~-~~~ 302 (640)
++..+|++++|+|++++.+.... ..++ .++.. ..++|+++|+||+|+..... ..+. .....+ . . ..+
T Consensus 65 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~-~~~l~~~~~~~~~~~~ 141 (162)
T cd04157 65 YYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKI-TQLLGLENIKDKPWHI 141 (162)
T ss_pred HHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHH-HHHhCCccccCceEEE
Confidence 88999999999999986654321 1222 22211 13789999999999875422 1111 111111 1 1 136
Q ss_pred EEeeccCCCChhHHHHHhcc
Q 006555 303 IAISAETGLGMTELYEALRP 322 (640)
Q Consensus 303 i~iSA~~g~gi~eL~~~I~~ 322 (640)
+++||++|.|+++++++|.+
T Consensus 142 ~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 142 FASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EEeeCCCCCchHHHHHHHhc
Confidence 89999999999999998864
No 175
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=4.7e-19 Score=185.92 Aligned_cols=171 Identities=23% Similarity=0.309 Sum_probs=132.1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
-++|+|+|+||||||||+|+|++++.++|++.+| ||||.....++++|.++.|+||+|+-+.. .+............
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~G--TTRDaiea~v~~~G~~v~L~DTAGiRe~~-~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPG--TTRDAIEAQVTVNGVPVRLSDTAGIREES-NDGIEALGIERARK 344 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCC--cchhhheeEeecCCeEEEEEecccccccc-CChhHHHhHHHHHH
Confidence 3699999999999999999999999999999999 99999999999999999999999998622 12233334566677
Q ss_pred HHhccceEEEEeecCCCCChhhHHHHHHHHHhC----------CCCcEEEEecCCCCCcCCccchH-HHH-HHHHhc-CC
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHA----------PQIKPIVAMNKCESLHNGTGSLA-GAA-AESLML-GF 299 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~----------~~~p~ilV~NK~Dl~~~~~~~~~-~~~-~~~~~~-g~ 299 (640)
.+..||++++|+|+....+.++..+.+.+.... ...|++++.||+|+..+-..... ... ...... .+
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~ 424 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVF 424 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCccc
Confidence 899999999999998778888888888777632 24789999999999876221111 000 001111 22
Q ss_pred CCcEEeeccCCCChhHHHHHhccchHH
Q 006555 300 GDPIAISAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 300 ~~~i~iSA~~g~gi~eL~~~I~~~l~~ 326 (640)
....++|+++++|+++|.+.+.+.+..
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 234569999999999999999877654
No 176
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.80 E-value=1e-18 Score=167.45 Aligned_cols=154 Identities=17% Similarity=0.161 Sum_probs=112.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|.+|||||||++++.+... ...... ++.+.....+..++ .++.+|||||+. ++.....
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 66 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY--PTEYVP--TAFDNFSVVVLVDGKPVRLQLCDTAGQD----------EFDKLRP 66 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCC--ceeeeeeEEEEECCEEEEEEEEECCCCh----------hhccccc
Confidence 3799999999999999999987653 223332 55555555566655 578899999997 3334445
Q ss_pred HHHhccceEEEEeecCCCCChhhH--HHHHHHHHhCCCCcEEEEecCCCCCcC------------CccchHHHHHHHHhc
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLML 297 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~L~~~~~~~p~ilV~NK~Dl~~~------------~~~~~~~~~~~~~~~ 297 (640)
.+++.+|++++|+|++++.+.++. .+...++...++.|+++|+||+|+... ..+..++........
T Consensus 67 ~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 146 (173)
T cd04130 67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKI 146 (173)
T ss_pred cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHh
Confidence 578899999999999987776642 244445444457899999999998643 223334445555666
Q ss_pred CCCCcEEeeccCCCChhHHHHHhc
Q 006555 298 GFGDPIAISAETGLGMTELYEALR 321 (640)
Q Consensus 298 g~~~~i~iSA~~g~gi~eL~~~I~ 321 (640)
+...++++||++|.|++++++.+.
T Consensus 147 ~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 147 GACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHH
Confidence 766789999999999999998764
No 177
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.80 E-value=1.5e-18 Score=163.85 Aligned_cols=155 Identities=21% Similarity=0.186 Sum_probs=107.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|.+|||||||+|+|++...... ..+. .+.+.....+...+ ..+.+|||||+. ++.....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~ 67 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPD-LAAT--IGVDFKVKTLTVDGKKVKLAIWDTAGQE----------RFRTLTS 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc-cCCc--ccceEEEEEEEECCEEEEEEEEECCCch----------hhhhhhH
Confidence 3799999999999999999998765321 1121 22233333333443 578999999986 4445556
Q ss_pred HHHhccceEEEEeecCCCCChhhHH-HHHHHHHh--CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeecc
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~L~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~ 308 (640)
.+++.+|++++|+|.+++.+.++.. +.+.+.+. ..+.|+++|+||+|+.... ...++........++ .++++||+
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~Sa~ 145 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENRE-VTREEGLKFARKHNM-LFIETSAK 145 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccc-cCHHHHHHHHHHcCC-EEEEEecC
Confidence 6788999999999998876655422 23333332 2478999999999997432 223334444445565 68999999
Q ss_pred CCCChhHHHHHhccc
Q 006555 309 TGLGMTELYEALRPS 323 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~ 323 (640)
+|.|++++++.+.+.
T Consensus 146 ~~~gi~~~~~~~~~~ 160 (161)
T cd01863 146 TRDGVQQAFEELVEK 160 (161)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999987653
No 178
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.80 E-value=4.2e-19 Score=159.76 Aligned_cols=161 Identities=19% Similarity=0.279 Sum_probs=134.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC---eeEEEEeCCCCccccCccchHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD---LRFKVLDSAGLETEATSGSILDRTAGMT 230 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~ 230 (640)
+++.++|++-||||||+..++..+.+..++.. +..|.....++... .+++||||+|++ ++...+
T Consensus 9 frlivigdstvgkssll~~ft~gkfaelsdpt---vgvdffarlie~~pg~riklqlwdtagqe----------rfrsit 75 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSDPT---VGVDFFARLIELRPGYRIKLQLWDTAGQE----------RFRSIT 75 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccCCCc---cchHHHHHHHhcCCCcEEEEEEeeccchH----------HHHHHH
Confidence 58999999999999999999998887766433 67777766666532 589999999999 889999
Q ss_pred HHHHhccceEEEEeecCCCCChhhHHHHHHHHHh-----CCCCcE-EEEecCCCCCcCCccchHHHHHHHHhcCCCCcEE
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-----APQIKP-IVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 304 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~-----~~~~p~-ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~ 304 (640)
..|++++-.+++|+|.++..+++. +-.|+.+. .+.+++ .+|+.|+|+...+++..++....+..+|. ..++
T Consensus 76 ksyyrnsvgvllvyditnr~sfeh--v~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM-~FVE 152 (213)
T KOG0091|consen 76 KSYYRNSVGVLLVYDITNRESFEH--VENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGM-AFVE 152 (213)
T ss_pred HHHhhcccceEEEEeccchhhHHH--HHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCc-eEEE
Confidence 999999999999999999888874 44566542 245554 68999999999998888888888889998 8899
Q ss_pred eeccCCCChhHHHHHhccchHHHHhh
Q 006555 305 ISAETGLGMTELYEALRPSVEDYMLR 330 (640)
Q Consensus 305 iSA~~g~gi~eL~~~I~~~l~~~~~~ 330 (640)
+||++|.|++|.++.|.+.+...+++
T Consensus 153 TSak~g~NVeEAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 153 TSAKNGCNVEEAFDMLAQEIFQAIQQ 178 (213)
T ss_pred ecccCCCcHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998877655443
No 179
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.80 E-value=1.1e-18 Score=171.74 Aligned_cols=148 Identities=19% Similarity=0.138 Sum_probs=100.5
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEEC-C--eEEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ-G--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
+||+++|.+|||||||+++|++.. ......+.+..+.....+.++ + ..+.||||||..+.. .....
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~-~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~----------~~~~~ 69 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGI-FSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG----------GMTRV 69 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhh----------hhHHH
Confidence 589999999999999999999764 222233444445555555655 4 467899999964331 12346
Q ss_pred HHhhccEEEEEecccHHH----------HH--------HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCC
Q 006555 435 NLMRAHVVALVLDAEEVR----------AV--------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ 496 (640)
Q Consensus 435 ~i~~advvllVvDa~~~~----------~~--------~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~ 496 (640)
+++++|++|+|+|+++.. .+ ..++|+|||+||+|+.+..... .+.+. ++...
T Consensus 70 ~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~--~~~~~-----~~~~~--- 139 (201)
T cd04107 70 YYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKD--GEQMD-----QFCKE--- 139 (201)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccC--HHHHH-----HHHHH---
Confidence 778999999999998750 00 1467999999999997422110 01111 11111
Q ss_pred CCCCcEEEeccccCCCHHHHHHHHHHHHHH
Q 006555 497 VTGIPVVFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 497 ~~~~~~v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
....+++++||++|.|++++|+.+.+.+.+
T Consensus 140 ~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 140 NGFIGWFETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 112579999999999999999999887643
No 180
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.79 E-value=2.5e-18 Score=164.32 Aligned_cols=157 Identities=20% Similarity=0.230 Sum_probs=111.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHH-HHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTA-GMT 230 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~-~~~ 230 (640)
.+|+++|.+|||||||++++++...... ..+ +.+.+.....+.+.+ ..+.+|||||++ ++. ...
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 69 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPER-TEA--TIGVDFRERTVEIDGERIKVQLWDTAGQE----------RFRKSMV 69 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCc-ccc--ceeEEEEEEEEEECCeEEEEEEEeCCChH----------HHHHhhH
Confidence 5899999999999999999998654221 112 244455555566655 578999999987 332 245
Q ss_pred HHHHhccceEEEEeecCCCCChhhH-HHHHHHHHh--CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeec
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 307 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA 307 (640)
..+++.+|++++|+|++++.+..+. .+.+.+... ..+.|+++|+||+|+..................+. +++++||
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa 148 (170)
T cd04115 70 QHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSM-PLFETSA 148 (170)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCC-cEEEEec
Confidence 5678899999999999987766643 233333332 24689999999999986655444444444444444 7899999
Q ss_pred cC---CCChhHHHHHhccch
Q 006555 308 ET---GLGMTELYEALRPSV 324 (640)
Q Consensus 308 ~~---g~gi~eL~~~I~~~l 324 (640)
++ +.|+++++..+.+.+
T Consensus 149 ~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 149 KDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred cCCcCCCCHHHHHHHHHHHh
Confidence 99 889999998877543
No 181
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.79 E-value=1.7e-18 Score=161.75 Aligned_cols=154 Identities=23% Similarity=0.259 Sum_probs=109.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEE--CCeeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|.+|||||||+|+|++....... .+. ++.+.....+.. ....+.+|||||+. .+.....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~ 67 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENY-KST--IGVDFKSKTIEIDGKTVKLQIWDTAGQE----------RFRSITP 67 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCcc-CCc--eeeeeEEEEEEECCEEEEEEEEecCChH----------HHHHHHH
Confidence 37999999999999999999987754431 221 344444444444 34678999999986 4555677
Q ss_pred HHHhccceEEEEeecCCCCChhh-HHHHHHHHHhC-CCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccC
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHA-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 309 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~L~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~ 309 (640)
.+++++|++++|+|.+++.+.++ ..+...+.... .+.|+++|+||+|+..+.....++........+. +++++||++
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~ 146 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGL-LFFETSAKT 146 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCC-eEEEEecCC
Confidence 78899999999999987544332 22333333332 4689999999999974443334444444444455 789999999
Q ss_pred CCChhHHHHHhc
Q 006555 310 GLGMTELYEALR 321 (640)
Q Consensus 310 g~gi~eL~~~I~ 321 (640)
|.|++++++.|.
T Consensus 147 ~~~i~~~~~~i~ 158 (159)
T cd00154 147 GENVEELFQSLA 158 (159)
T ss_pred CCCHHHHHHHHh
Confidence 999999999875
No 182
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.79 E-value=9.3e-19 Score=166.40 Aligned_cols=145 Identities=19% Similarity=0.166 Sum_probs=97.7
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECC--eEEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|||||||+++|++.... ....+.++.+.....+..++ ..+.+|||||+.+. . .....+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~---------~-~~~~~~ 70 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERY---------R-TITTAY 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHH---------H-HHHHHH
Confidence 68999999999999999999976532 22223333333333344444 46889999996432 1 123466
Q ss_pred HhhccEEEEEecccHH-----------HHH---HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 436 LMRAHVVALVLDAEEV-----------RAV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 436 i~~advvllVvDa~~~-----------~~~---~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
++.+|++++|+|+++. ... ....|+++|+||+|+.+..... .+.. .++.+ ..+.+
T Consensus 71 ~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~-----~~~~~----~~~~~ 139 (165)
T cd01865 71 YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVS--SERG-----RQLAD----QLGFE 139 (165)
T ss_pred ccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccC--HHHH-----HHHHH----HcCCE
Confidence 7899999999999875 111 1367999999999997643211 0100 11111 12458
Q ss_pred EEEeccccCCCHHHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
++++||++|.|++++|+.+....
T Consensus 140 ~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 140 FFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998754
No 183
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.79 E-value=8e-19 Score=167.70 Aligned_cols=151 Identities=17% Similarity=0.171 Sum_probs=104.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 234 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 234 (640)
+|+++|.+|||||||+++|++.... . +. .|.......+...+.++.+|||||+. ++......++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~--~~--~T~~~~~~~~~~~~~~i~l~Dt~G~~----------~~~~~~~~~~ 64 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--Q--PI--PTIGFNVETVEYKNLKFTIWDVGGKH----------KLRPLWKHYY 64 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--C--cC--CcCceeEEEEEECCEEEEEEECCCCh----------hcchHHHHHh
Confidence 5899999999999999999986432 1 22 33333334566778899999999987 3445566788
Q ss_pred hccceEEEEeecCCCCChhhHHHHHHHHHh-----CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcC--CC---CcEE
Q 006555 235 AKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLG--FG---DPIA 304 (640)
Q Consensus 235 ~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~-----~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g--~~---~~i~ 304 (640)
..+|++++|+|++++.+..+ +..|+... ..+.|+++|+||+|+.... ..++........+ .. .+++
T Consensus 65 ~~ad~ii~V~D~s~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 140 (169)
T cd04158 65 LNTQAVVFVVDSSHRDRVSE--AHSELAKLLTEKELRDALLLIFANKQDVAGAL--SVEEMTELLSLHKLCCGRSWYIQG 140 (169)
T ss_pred ccCCEEEEEEeCCcHHHHHH--HHHHHHHHhcChhhCCCCEEEEEeCcCcccCC--CHHHHHHHhCCccccCCCcEEEEe
Confidence 99999999999998655543 22333221 2358999999999986432 2222222222111 11 4578
Q ss_pred eeccCCCChhHHHHHhccchH
Q 006555 305 ISAETGLGMTELYEALRPSVE 325 (640)
Q Consensus 305 iSA~~g~gi~eL~~~I~~~l~ 325 (640)
+||++|.|+++++++|.+.+.
T Consensus 141 ~Sa~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 141 CDARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred CcCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999986554
No 184
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.79 E-value=8.9e-19 Score=165.99 Aligned_cols=144 Identities=22% Similarity=0.239 Sum_probs=100.6
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|||||||++++++... .....+..+.+.....+..++. .+.+|||||..+.. .....+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~----------~~~~~~ 69 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEF-HSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQ----------TITKQY 69 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHH----------hhHHHH
Confidence 4799999999999999999997643 3333444455555556667664 56799999964331 123356
Q ss_pred HhhccEEEEEecccHH-------H------HH-HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 436 LMRAHVVALVLDAEEV-------R------AV-EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 436 i~~advvllVvDa~~~-------~------~~-~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
++.+|++++|+|+++. . .. ..+.|+++|+||+|+.+..... .+....++...+++
T Consensus 70 ~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~-----------~~~~~~~~~~~~~~ 138 (161)
T cd04117 70 YRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVG-----------DEQGNKLAKEYGMD 138 (161)
T ss_pred hcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCC-----------HHHHHHHHHHcCCE
Confidence 7789999999999876 1 11 1368999999999997543211 11111112223468
Q ss_pred EEEeccccCCCHHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
++++||++|.|++++|++|.+.
T Consensus 139 ~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 139 FFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred EEEEeCCCCCCHHHHHHHHHhh
Confidence 9999999999999999998753
No 185
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.79 E-value=7.6e-19 Score=166.88 Aligned_cols=156 Identities=18% Similarity=0.213 Sum_probs=110.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCe--eEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
+|+++|.+|||||||+++++..... ...+. ++.+.......+++. .+.+|||||.... .......
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~ 67 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI--GEYDP--NLESLYSRQVTIDGEQVSLEILDTAGQQQA---------DTEQLER 67 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc--cccCC--ChHHhceEEEEECCEEEEEEEEECCCCccc---------ccchHHH
Confidence 4899999999999999999875432 22332 333333444455554 6889999999731 1123345
Q ss_pred HHhccceEEEEeecCCCCChhh-HHHHHHHHHh---CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeecc
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKH---APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~-~~~~~~L~~~---~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~ 308 (640)
+++.+|++++|+|++++.+.+. ..+..++... ..+.|+++|+||+|+.........+........+. .++++||+
T Consensus 68 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~ 146 (165)
T cd04146 68 SIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGC-LFFEVSAA 146 (165)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCC-EEEEeCCC
Confidence 6889999999999998766654 2344555543 23799999999999876544444444455556665 68999999
Q ss_pred CC-CChhHHHHHhccch
Q 006555 309 TG-LGMTELYEALRPSV 324 (640)
Q Consensus 309 ~g-~gi~eL~~~I~~~l 324 (640)
+| .|++++++.+.+.+
T Consensus 147 ~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 147 EDYDGVHSVFHELCREV 163 (165)
T ss_pred CCchhHHHHHHHHHHHH
Confidence 99 59999999987644
No 186
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=3.4e-18 Score=162.76 Aligned_cols=157 Identities=19% Similarity=0.163 Sum_probs=110.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 230 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 230 (640)
.++|+++|.+|||||||++++++.... ...+.+.+.+.....+.+.+ ..+.+|||||+. ++....
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~ 73 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFP---PGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE----------RFRSIT 73 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH----------HHHHHH
Confidence 479999999999999999999975432 22233355566666667766 458899999986 444555
Q ss_pred HHHHhccceEEEEeecCCCCChhhH-HHHHHHHHhC-CCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeecc
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHA-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~ 308 (640)
..++..+|++++|+|++++.+.+.. .+...++... .+.|+++|+||+|+........... ..+....-..++++||+
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~-~~~~~~~~~~~~~~Sa~ 152 (169)
T cd04114 74 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRA-EEFSDAQDMYYLETSAK 152 (169)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHH-HHHHHHcCCeEEEeeCC
Confidence 6788999999999999876554421 2233333322 3689999999999876544332222 22333222467999999
Q ss_pred CCCChhHHHHHhccc
Q 006555 309 TGLGMTELYEALRPS 323 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~ 323 (640)
+|.|++++++.|.+.
T Consensus 153 ~~~gv~~l~~~i~~~ 167 (169)
T cd04114 153 ESDNVEKLFLDLACR 167 (169)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999998754
No 187
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.79 E-value=2e-18 Score=163.29 Aligned_cols=150 Identities=17% Similarity=0.197 Sum_probs=100.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 234 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 234 (640)
+|+++|.+|||||||++++...... ...|. +. .....+.....++.+|||||+. ++......++
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~--~~~pt--~g--~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~~ 65 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV--TTIPT--IG--FNVETVEYKNISFTVWDVGGQD----------KIRPLWRHYF 65 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc--ccCCC--CC--cceEEEEECCEEEEEEECCCCH----------hHHHHHHHHh
Confidence 7999999999999999999765442 22221 22 2223455677899999999997 5556667789
Q ss_pred hccceEEEEeecCCCCChhhH--HHHHHHHH-hCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCC----CCcEEeec
Q 006555 235 AKTQFAIFMIDVRSGLHPLDL--EVGKWLRK-HAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF----GDPIAISA 307 (640)
Q Consensus 235 ~~ad~vl~VvD~s~~~~~~~~--~~~~~L~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~----~~~i~iSA 307 (640)
+.+|++++|+|+++..+..+. ++.+.+.. ...+.|+++|+||+|+.+... ..+.........+ ..++++||
T Consensus 66 ~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa 143 (159)
T cd04150 66 QNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS--AAEVTDKLGLHSLRNRNWYIQATCA 143 (159)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC--HHHHHHHhCccccCCCCEEEEEeeC
Confidence 999999999999876544431 12222222 123689999999999865322 1121111111011 13468999
Q ss_pred cCCCChhHHHHHhcc
Q 006555 308 ETGLGMTELYEALRP 322 (640)
Q Consensus 308 ~~g~gi~eL~~~I~~ 322 (640)
++|.|+++++++|.+
T Consensus 144 k~g~gv~~~~~~l~~ 158 (159)
T cd04150 144 TSGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCCHHHHHHHHhc
Confidence 999999999998864
No 188
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.79 E-value=7.3e-19 Score=169.06 Aligned_cols=154 Identities=17% Similarity=0.153 Sum_probs=101.7
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.++||||||+.+++... +. ..+..|..+.....+..++. ++.||||+|+.++.. + ...+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~-f~-~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~---------~-~~~~ 69 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK-FP-TDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNR---------L-RPLS 69 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC-CC-CCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccc---------c-chhh
Confidence 589999999999999999999654 32 23333333444445566664 567999999755421 1 2246
Q ss_pred HhhccEEEEEecccHH----H--------H--HHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC-
Q 006555 436 LMRAHVVALVLDAEEV----R--------A--VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI- 500 (640)
Q Consensus 436 i~~advvllVvDa~~~----~--------~--~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~- 500 (640)
+++||++|+|+|.++. . . ...+.|+|||+||+||.+..... ..+.-.+.+..+..+.+++..+.
T Consensus 70 ~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~-~~~~~~~~v~~~~~~~~a~~~~~~ 148 (176)
T cd04133 70 YRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYL-ADHPGASPITTAQGEELRKQIGAA 148 (176)
T ss_pred cCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhh-hhccCCCCCCHHHHHHHHHHcCCC
Confidence 7899999999999875 1 1 12468999999999996532100 00000011222233333333455
Q ss_pred cEEEeccccCCCHHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
+++++||++|.||+++|+.+++..
T Consensus 149 ~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 149 AYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred EEEECCCCcccCHHHHHHHHHHHH
Confidence 699999999999999999998754
No 189
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.79 E-value=9.8e-19 Score=174.33 Aligned_cols=159 Identities=19% Similarity=0.223 Sum_probs=111.0
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEE--CCeeEEEEeCCCCccccCccchHHHHHHH
Q 006555 152 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGM 229 (640)
Q Consensus 152 ~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 229 (640)
...+|++||.+|||||||+++++........ .+. +..+.....+.. ....+.+|||||+. ++...
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~-~~t--ig~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~ 78 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-EPT--IGVEVHPLDFFTNCGKIRFYCWDTAGQE----------KFGGL 78 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCcc-CCc--cceeEEEEEEEECCeEEEEEEEECCCch----------hhhhh
Confidence 3469999999999999999998876542211 111 222333333333 33689999999997 44455
Q ss_pred HHHHHhccceEEEEeecCCCCChhhH-HHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeecc
Q 006555 230 TANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 230 ~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~ 308 (640)
...++..+|++|+|+|++++.+..+. .+.+.+++...+.|+++|+||+|+..... .... .......++ .++++||+
T Consensus 79 ~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v-~~~~-~~~~~~~~~-~~~e~SAk 155 (219)
T PLN03071 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQ-VTFHRKKNL-QYYEISAK 155 (219)
T ss_pred hHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccC-CHHH-HHHHHhcCC-EEEEcCCC
Confidence 56788999999999999987766542 23344444456899999999999864322 2222 233344444 68999999
Q ss_pred CCCChhHHHHHhccchHH
Q 006555 309 TGLGMTELYEALRPSVED 326 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~l~~ 326 (640)
+|.|+++++++|.+.+.+
T Consensus 156 ~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 156 SNYNFEKPFLYLARKLAG 173 (219)
T ss_pred CCCCHHHHHHHHHHHHHc
Confidence 999999999999876643
No 190
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.79 E-value=1.1e-18 Score=161.45 Aligned_cols=140 Identities=16% Similarity=0.111 Sum_probs=97.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 234 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 234 (640)
+|+++|++|||||||+|+|++.... .. .|. .+.+.+ .+|||||+... ..++.......+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~---~t~-----~~~~~~---~~iDt~G~~~~------~~~~~~~~~~~~ 60 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YK---KTQ-----AVEYND---GAIDTPGEYVE------NRRLYSALIVTA 60 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----cc---cce-----eEEEcC---eeecCchhhhh------hHHHHHHHHHHh
Confidence 7999999999999999999987542 11 121 112222 68999998411 112233334568
Q ss_pred hccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCChh
Q 006555 235 AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMT 314 (640)
Q Consensus 235 ~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~gi~ 314 (640)
+++|++++|+|++++.+..+..+.+ .. ..|+++|+||+|+.+. ....+.....+...+..+++++||++|.|++
T Consensus 61 ~~ad~vilv~d~~~~~s~~~~~~~~---~~--~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 134 (142)
T TIGR02528 61 ADADVIALVQSATDPESRFPPGFAS---IF--VKPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPIFEISSVDEQGLE 134 (142)
T ss_pred hcCCEEEEEecCCCCCcCCChhHHH---hc--cCCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcEEEEecCCCCCHH
Confidence 9999999999999988776543332 22 3599999999998753 2222333334445565578999999999999
Q ss_pred HHHHHhc
Q 006555 315 ELYEALR 321 (640)
Q Consensus 315 eL~~~I~ 321 (640)
++++.+.
T Consensus 135 ~l~~~l~ 141 (142)
T TIGR02528 135 ALVDYLN 141 (142)
T ss_pred HHHHHHh
Confidence 9998874
No 191
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.79 E-value=5.3e-19 Score=169.18 Aligned_cols=159 Identities=23% Similarity=0.229 Sum_probs=109.2
Q ss_pred EEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEEC-CeeEEEEeCCCCccccCccchHHHHHHHHHHHHhc
Q 006555 158 IIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG-DLRFKVLDSAGLETEATSGSILDRTAGMTANVLAK 236 (640)
Q Consensus 158 lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 236 (640)
++|.+|||||||+|+|++.+. .+.+.++ +|.+...+.+.++ +.++.+|||||+........ .........+..
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~--~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~---~~~~~~~~~~~~ 74 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPF--TTLEPNLGVVEVPDGARIQVADIPGLIEGASEGR---GLGNQFLAHIRR 74 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCc--eeecCcceEEEcCCCCeEEEEeccccchhhhcCC---CccHHHHHHHhc
Confidence 589999999999999999865 4555666 8888888888888 89999999999864322111 111233456788
Q ss_pred cceEEEEeecCCCC------ChhhH-HHHHHHHHhC--------CCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCC
Q 006555 237 TQFAIFMIDVRSGL------HPLDL-EVGKWLRKHA--------PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGD 301 (640)
Q Consensus 237 ad~vl~VvD~s~~~------~~~~~-~~~~~L~~~~--------~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~ 301 (640)
+|++++|+|+++.. +..+. .+...+.... .++|+++|+||+|+.......... ...........
T Consensus 75 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~ 153 (176)
T cd01881 75 ADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL-VRELALEEGAE 153 (176)
T ss_pred cCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH-HHHHhcCCCCC
Confidence 99999999998863 22221 2222232211 368999999999997643321111 11222223347
Q ss_pred cEEeeccCCCChhHHHHHhccc
Q 006555 302 PIAISAETGLGMTELYEALRPS 323 (640)
Q Consensus 302 ~i~iSA~~g~gi~eL~~~I~~~ 323 (640)
++++||++|.|++++++.+...
T Consensus 154 ~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 154 VVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EEEEehhhhcCHHHHHHHHHhh
Confidence 8999999999999999988653
No 192
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.79 E-value=2.6e-18 Score=166.13 Aligned_cols=152 Identities=18% Similarity=0.216 Sum_probs=106.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
..+|+++|.+|||||||++++....... ..|. +.. ....+..++..+.+|||||+. ++..++..
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~--~~pt--~g~--~~~~~~~~~~~~~i~D~~Gq~----------~~~~~~~~ 80 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVT--TIPT--IGF--NVETVEYKNISFTVWDVGGQD----------KIRPLWRH 80 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCcc--ccCC--cce--eEEEEEECCEEEEEEECCCCH----------HHHHHHHH
Confidence 3699999999999999999998654422 1221 222 233456778899999999987 55567778
Q ss_pred HHhccceEEEEeecCCCCChhhH--HHHHHHHH-hCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCC-------Cc
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRK-HAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFG-------DP 302 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~L~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~-------~~ 302 (640)
+++++|++++|+|+++..+..+. ++.+.+.. ..++.|+++|+||+|+..... .++ ....+++. .+
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~--~~~---~~~~l~l~~~~~~~~~~ 155 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAE---ITDKLGLHSLRQRHWYI 155 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCC--HHH---HHHHhCccccCCCceEE
Confidence 89999999999999976554431 12222221 124789999999999876432 111 12223332 23
Q ss_pred EEeeccCCCChhHHHHHhccchH
Q 006555 303 IAISAETGLGMTELYEALRPSVE 325 (640)
Q Consensus 303 i~iSA~~g~gi~eL~~~I~~~l~ 325 (640)
+++||++|+|+++++++|.+.+.
T Consensus 156 ~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 156 QSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred EeccCCCCCCHHHHHHHHHHHHh
Confidence 57999999999999999977654
No 193
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.79 E-value=1.1e-18 Score=165.43 Aligned_cols=144 Identities=19% Similarity=0.183 Sum_probs=98.9
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|++|||||||+++|++... .....+.++.+.....+..++. .+.+|||||..+. . .....+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~-~~~~~~ 69 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRF-VSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY---------L-EVRNEF 69 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHH---------H-HHHHHH
Confidence 5899999999999999999997753 3334444445554445555554 6779999996322 1 122356
Q ss_pred HhhccEEEEEecccHH-----------HH---HH-----cCCcEEEEEeCCCCCCCcc-chHHHHHHHHHcHHHHHhhCC
Q 006555 436 LMRAHVVALVLDAEEV-----------RA---VE-----EGRGLVVIVNKMDLLSGRQ-NSALYKRVKEAVPQEIQTVIP 495 (640)
Q Consensus 436 i~~advvllVvDa~~~-----------~~---~~-----~~~p~Ilv~NK~Dl~~~~~-~~~~~~~~~~~v~~~~~~~~~ 495 (640)
++.+|++|+|+|.++. .. .. .+.|+++|+||+|+.+... ..+.... . .
T Consensus 70 ~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~--------~----~ 137 (168)
T cd04119 70 YKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRL--------W----A 137 (168)
T ss_pred hccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHH--------H----H
Confidence 7789999999999865 01 11 3589999999999974321 1111111 1 1
Q ss_pred CCCCCcEEEeccccCCCHHHHHHHHHHHH
Q 006555 496 QVTGIPVVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 496 ~~~~~~~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
...+.+++++||++|.|++++|+.+.+.+
T Consensus 138 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 138 ESKGFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred HHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 11246899999999999999999998754
No 194
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.79 E-value=9.6e-19 Score=165.25 Aligned_cols=143 Identities=17% Similarity=0.223 Sum_probs=98.1
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEEC----CeEEEEEEeCCCCcccccCCchhhHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ----GRTVYLVDTAGWLQREKEKGPASLSVMQSR 433 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 433 (640)
+||+++|.+|+|||||++++++... .....++.+.+.....+.+. +..+.||||||+.+. . ....
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~-~~~~ 69 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIF-TKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF---------D-AITK 69 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH---------H-HhHH
Confidence 4899999999999999999997642 22223344445444445544 457889999995432 1 1234
Q ss_pred HHHhhccEEEEEecccHH----------HHH---HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 434 KNLMRAHVVALVLDAEEV----------RAV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 434 ~~i~~advvllVvDa~~~----------~~~---~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
.+++.+|++++|+|+++. ... ..++|+|+|+||+|+........ +.. .++.+ ..+.
T Consensus 70 ~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~--~~~-----~~~~~----~~~~ 138 (162)
T cd04106 70 AYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITN--EEA-----EALAK----RLQL 138 (162)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCH--HHH-----HHHHH----HcCC
Confidence 577899999999999875 111 13789999999999976432111 000 11111 2256
Q ss_pred cEEEeccccCCCHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVID 522 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~ 522 (640)
+++++||++|.|++++|+.+..
T Consensus 139 ~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 139 PLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 8999999999999999998864
No 195
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.79 E-value=8.8e-19 Score=169.48 Aligned_cols=156 Identities=15% Similarity=0.152 Sum_probs=104.3
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHH
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 433 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 433 (640)
..+||+++|.++||||||+++++.... ...+..|..+.....+.+++. .+.||||+|..++ ... ..
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f--~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~---------~~~-~~ 71 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY---------DNV-RP 71 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC--CCccCCceeeeeEEEEEECCEEEEEEEEECCCchhh---------Hhh-hh
Confidence 357999999999999999999997642 233333333444445566665 5779999996433 212 23
Q ss_pred HHHhhccEEEEEecccHH----H----H------HHcCCcEEEEEeCCCCCCCccchHHHHH-HHHHcHHHHHhhCCCCC
Q 006555 434 KNLMRAHVVALVLDAEEV----R----A------VEEGRGLVVIVNKMDLLSGRQNSALYKR-VKEAVPQEIQTVIPQVT 498 (640)
Q Consensus 434 ~~i~~advvllVvDa~~~----~----~------~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 498 (640)
.+++++|++|+|+|+++. . + ...+.|+|||+||+||.+.......... -.+.+..+.++.+++..
T Consensus 72 ~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 151 (182)
T cd04172 72 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQI 151 (182)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHc
Confidence 467899999999999986 1 1 1136899999999998642110000000 00123444445555555
Q ss_pred CC-cEEEeccccCCC-HHHHHHHHHHH
Q 006555 499 GI-PVVFTSALEGRG-RIAVMHQVIDT 523 (640)
Q Consensus 499 ~~-~~v~iSAk~g~g-v~~l~~~i~~~ 523 (640)
++ +++++||++|.| |+++|..+++.
T Consensus 152 ~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 152 GAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred CCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 64 899999999998 99999998874
No 196
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.79 E-value=1.6e-18 Score=165.06 Aligned_cols=156 Identities=17% Similarity=0.187 Sum_probs=105.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeE-EEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIR-EGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 233 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~-~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 233 (640)
+|+++|.+|||||||+|+|++..... ..+. ++.+.. .......+.++.+|||||.. +.......+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~ 67 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPE--NVPR--VLPEITIPADVTPERVPTTIVDTSSRP----------QDRANLAAE 67 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc--cCCC--cccceEeeeeecCCeEEEEEEeCCCch----------hhhHHHhhh
Confidence 79999999999999999999876532 2221 111111 11122245689999999987 233344556
Q ss_pred HhccceEEEEeecCCCCChhhH--HHHHHHHHhCCCCcEEEEecCCCCCcCCccc-hHHH-HHHHHhc-CCCCcEEeecc
Q 006555 234 LAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNGTGS-LAGA-AAESLML-GFGDPIAISAE 308 (640)
Q Consensus 234 ~~~ad~vl~VvD~s~~~~~~~~--~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~-~~~~~~~-g~~~~i~iSA~ 308 (640)
+..+|++++|+|++++.+.++. .+.+.++....+.|+++|+||+|+.+..... .+.. ......+ +...++++||+
T Consensus 68 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 147 (166)
T cd01893 68 IRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAK 147 (166)
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccc
Confidence 7999999999999987776652 2445555545578999999999997654321 1111 1111222 22367999999
Q ss_pred CCCChhHHHHHhccch
Q 006555 309 TGLGMTELYEALRPSV 324 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~l 324 (640)
+|.|++++++.+...+
T Consensus 148 ~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 148 TLINVSEVFYYAQKAV 163 (166)
T ss_pred cccCHHHHHHHHHHHh
Confidence 9999999999887643
No 197
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.79 E-value=1.6e-18 Score=166.19 Aligned_cols=145 Identities=23% Similarity=0.327 Sum_probs=99.8
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
..++|+++|.+|||||||+++|.+.....+.++.|. ....+.+++..+.+|||||+.... .....+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~----~~~~~~~~~~~l~l~D~~G~~~~~----------~~~~~~ 78 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGF----QIKTLEYEGYKLNIWDVGGQKTLR----------PYWRNY 78 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCcccc----ceEEEEECCEEEEEEECCCCHHHH----------HHHHHH
Confidence 357999999999999999999997744333333332 223455678899999999964321 123467
Q ss_pred HhhccEEEEEecccHH-----------HH----HHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 436 LMRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 436 i~~advvllVvDa~~~-----------~~----~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
++.+|++++|+|+++. .. ...++|+++|+||+|+.+.....+ +.+ .+..........
T Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~----~~~----~~~~~~~~~~~~ 150 (173)
T cd04154 79 FESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEE----IRE----ALELDKISSHHW 150 (173)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHH----HHH----HhCccccCCCce
Confidence 7899999999999875 11 115789999999999975422111 111 111000112356
Q ss_pred cEEEeccccCCCHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVID 522 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~ 522 (640)
+++++||++|.|++++|+++..
T Consensus 151 ~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 151 RIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred EEEeccCCCCcCHHHHHHHHhc
Confidence 8999999999999999988753
No 198
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=3.9e-19 Score=167.71 Aligned_cols=149 Identities=21% Similarity=0.248 Sum_probs=117.9
Q ss_pred cCCceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHH
Q 006555 355 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQS 432 (640)
Q Consensus 355 ~~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~ 432 (640)
+..+||+++|+++||||-|+.+++..+ +.....+...++.....+.++++ +.+||||+|+.++. ..+
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnE-F~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyr----------Ait 80 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNE-FSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYR----------AIT 80 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccc-cCcccccceeEEEEeeceeecCcEEEEeeecccchhhhc----------ccc
Confidence 356899999999999999999999654 55556666667777777778777 56799999976653 223
Q ss_pred HHHHhhccEEEEEecccHH-------HH-------HHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCC
Q 006555 433 RKNLMRAHVVALVLDAEEV-------RA-------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 498 (640)
Q Consensus 433 ~~~i~~advvllVvDa~~~-------~~-------~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 498 (640)
-.++++|.++++|||++.. ++ .+.++++++|+||+||.+. +.++.+.++.++...
T Consensus 81 SaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~l-----------raV~te~~k~~Ae~~ 149 (222)
T KOG0087|consen 81 SAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHL-----------RAVPTEDGKAFAEKE 149 (222)
T ss_pred chhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhc-----------cccchhhhHhHHHhc
Confidence 4688899999999999875 11 2358899999999999774 345566666677777
Q ss_pred CCcEEEeccccCCCHHHHHHHHHHHHH
Q 006555 499 GIPVVFTSALEGRGRIAVMHQVIDTYQ 525 (640)
Q Consensus 499 ~~~~v~iSAk~g~gv~~l~~~i~~~~~ 525 (640)
+..++++||+.+.|+++.|+.++..+.
T Consensus 150 ~l~f~EtSAl~~tNVe~aF~~~l~~I~ 176 (222)
T KOG0087|consen 150 GLFFLETSALDATNVEKAFERVLTEIY 176 (222)
T ss_pred CceEEEecccccccHHHHHHHHHHHHH
Confidence 889999999999999999988876654
No 199
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.79 E-value=2e-18 Score=163.27 Aligned_cols=143 Identities=18% Similarity=0.205 Sum_probs=95.7
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHHh
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 437 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 437 (640)
+||+++|.+|||||||++++...... ...|.+..+. ..+.++...+.+|||||+.+.. .....+++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~--~~~pt~g~~~--~~~~~~~~~~~l~D~~G~~~~~----------~~~~~~~~ 66 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNV--ETVEYKNISFTVWDVGGQDKIR----------PLWRHYFQ 66 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--ccCCCCCcce--EEEEECCEEEEEEECCCCHhHH----------HHHHHHhc
Confidence 48999999999999999999755432 2233222222 2455678899999999964321 12346788
Q ss_pred hccEEEEEecccHH-----------HHHH----cCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcE
Q 006555 438 RAHVVALVLDAEEV-----------RAVE----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 502 (640)
Q Consensus 438 ~advvllVvDa~~~-----------~~~~----~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 502 (640)
++|++|+|+|+++. .... ...|++|++||+|+.+.....+.. ..+...........+
T Consensus 67 ~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~--------~~~~~~~~~~~~~~~ 138 (159)
T cd04150 67 NTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVT--------DKLGLHSLRNRNWYI 138 (159)
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHH--------HHhCccccCCCCEEE
Confidence 99999999999874 1111 258999999999996542211111 111111111223467
Q ss_pred EEeccccCCCHHHHHHHHHH
Q 006555 503 VFTSALEGRGRIAVMHQVID 522 (640)
Q Consensus 503 v~iSAk~g~gv~~l~~~i~~ 522 (640)
+++||++|.|++++|++|.+
T Consensus 139 ~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 139 QATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred EEeeCCCCCCHHHHHHHHhc
Confidence 89999999999999998853
No 200
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.79 E-value=9.5e-19 Score=166.71 Aligned_cols=154 Identities=16% Similarity=0.157 Sum_probs=108.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEEC--CeeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
+|+++|.+|||||||+|+|++.+... ...+ +..+......... ...+.+|||||++.. ......
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~----------~~~~~~ 67 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPT-EYVP---TVFDNYSATVTVDGKQVNLGLWDTAGQEEY----------DRLRPL 67 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCC---ceeeeeEEEEEECCEEEEEEEEeCCCcccc----------cccchh
Confidence 79999999999999999999876421 1122 2333333333443 357999999999832 222334
Q ss_pred HHhccceEEEEeecCCCCChhh--HHHHHHHHHhCCCCcEEEEecCCCCCcCCcc-----------chHHHHHHHHhcCC
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKHAPQIKPIVAMNKCESLHNGTG-----------SLAGAAAESLMLGF 299 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~--~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~-----------~~~~~~~~~~~~g~ 299 (640)
.+..+|++++|+|.+++.+... ..+...+.....++|+++|+||+|+...... ............+.
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 147 (171)
T cd00157 68 SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGA 147 (171)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCC
Confidence 5689999999999987655543 2234445545557999999999999765432 23334445556666
Q ss_pred CCcEEeeccCCCChhHHHHHhcc
Q 006555 300 GDPIAISAETGLGMTELYEALRP 322 (640)
Q Consensus 300 ~~~i~iSA~~g~gi~eL~~~I~~ 322 (640)
..++++||++|.|++++++.|.+
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 148 IGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred eEEEEeecCCCCCHHHHHHHHhh
Confidence 57899999999999999998864
No 201
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.79 E-value=2.2e-18 Score=166.81 Aligned_cols=157 Identities=24% Similarity=0.272 Sum_probs=116.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeec---------------CCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCc
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVY---------------NTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATS 219 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~---------------~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 219 (640)
+|+++|.+|+|||||+|+|++....... ...+ +|.+.......+.+..+.+|||||+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~liDtpG~~----- 73 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERG--ITIKSGVATFEWPDRRVNFIDTPGHE----- 73 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcC--CCeecceEEEeeCCEEEEEEeCCCcH-----
Confidence 4899999999999999999987543221 1122 56666666677778899999999987
Q ss_pred cchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccc--hHHHHHHHHhc
Q 006555 220 GSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS--LAGAAAESLML 297 (640)
Q Consensus 220 ~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~--~~~~~~~~~~~ 297 (640)
++......++..+|++++|+|++++......+....+... ++|+++|+||+|+..+.... .......+...
T Consensus 74 -----~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~--~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~ 146 (189)
T cd00881 74 -----DFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREG--GLPIIVAINKIDRVGEEDLEEVLREIKELLGLI 146 (189)
T ss_pred -----HHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHC--CCCeEEEEECCCCcchhcHHHHHHHHHHHHccc
Confidence 4445667788899999999999988877766766666653 78999999999998632211 11122222222
Q ss_pred C-------------CCCcEEeeccCCCChhHHHHHhccchH
Q 006555 298 G-------------FGDPIAISAETGLGMTELYEALRPSVE 325 (640)
Q Consensus 298 g-------------~~~~i~iSA~~g~gi~eL~~~I~~~l~ 325 (640)
+ ..+++++||++|.|++++++.+...++
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 147 GFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 2 246799999999999999999987764
No 202
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.79 E-value=1.1e-18 Score=165.97 Aligned_cols=142 Identities=19% Similarity=0.182 Sum_probs=94.0
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEEC--CeEEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ--GRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|||||||++++++.... ....+ +..+.....+..+ ...+.+|||||+.+.. .....+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~~~~ 69 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIP-TIEDTYRQVISCSKNICTLQITDTTGSHQFP----------AMQRLS 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CCcCC-cchheEEEEEEECCEEEEEEEEECCCCCcch----------HHHHHH
Confidence 68999999999999999999976532 22222 2212222223333 3467899999975432 112346
Q ss_pred HhhccEEEEEecccHH-------H----HHH------cCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCC
Q 006555 436 LMRAHVVALVLDAEEV-------R----AVE------EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 498 (640)
Q Consensus 436 i~~advvllVvDa~~~-------~----~~~------~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 498 (640)
+..+|++|+|+|+++. . ... .++|+++|+||+|+.+...... +....++...
T Consensus 70 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~-----------~~~~~~~~~~ 138 (165)
T cd04140 70 ISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSS-----------NEGAACATEW 138 (165)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecH-----------HHHHHHHHHh
Confidence 6789999999999875 0 111 4689999999999975322110 0111111122
Q ss_pred CCcEEEeccccCCCHHHHHHHHHH
Q 006555 499 GIPVVFTSALEGRGRIAVMHQVID 522 (640)
Q Consensus 499 ~~~~v~iSAk~g~gv~~l~~~i~~ 522 (640)
.++++++||++|.|++++|++|..
T Consensus 139 ~~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 139 NCAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred CCcEEEeecCCCCCHHHHHHHHHh
Confidence 468999999999999999999875
No 203
>PLN03108 Rab family protein; Provisional
Probab=99.79 E-value=4.3e-18 Score=168.63 Aligned_cols=161 Identities=19% Similarity=0.226 Sum_probs=117.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHH
Q 006555 152 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGM 229 (640)
Q Consensus 152 ~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 229 (640)
...+|+|+|.+|||||||+|+|++.+..... .+. ++.+.....+.+++ ..+.+|||||.+ ++..+
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~-~~t--i~~~~~~~~i~~~~~~i~l~l~Dt~G~~----------~~~~~ 71 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLT--IGVEFGARMITIDNKPIKLQIWDTAGQE----------SFRSI 71 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCC--ccceEEEEEEEECCEEEEEEEEeCCCcH----------HHHHH
Confidence 3579999999999999999999987653322 222 44444445555655 468899999987 45556
Q ss_pred HHHHHhccceEEEEeecCCCCChhhH-HHHHHHHHh-CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeec
Q 006555 230 TANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 307 (640)
Q Consensus 230 ~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA 307 (640)
...++..+|++++|+|++++.+.+.. ++...+... ..+.|+++|+||+|+........++....+...++ .++++||
T Consensus 72 ~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa 150 (210)
T PLN03108 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASA 150 (210)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCC-EEEEEeC
Confidence 67788999999999999986665542 222222222 34789999999999987555444555555666676 7899999
Q ss_pred cCCCChhHHHHHhccchHH
Q 006555 308 ETGLGMTELYEALRPSVED 326 (640)
Q Consensus 308 ~~g~gi~eL~~~I~~~l~~ 326 (640)
++|.|++++++.+.+.+-+
T Consensus 151 ~~~~~v~e~f~~l~~~~~~ 169 (210)
T PLN03108 151 KTAQNVEEAFIKTAAKIYK 169 (210)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999988876644
No 204
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.79 E-value=1.4e-18 Score=169.60 Aligned_cols=155 Identities=21% Similarity=0.296 Sum_probs=105.2
Q ss_pred ceEEEEeCCCCchHHHHHHHhcC------CceeecCcccceeeeEEEEEEEC--------------CeEEEEEEeCCCCc
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQE------DRVLVGPEAGLTRDSVRVHFEYQ--------------GRTVYLVDTAGWLQ 417 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~------~~~~~~~~~gtT~d~~~~~~~~~--------------~~~~~liDTpG~~~ 417 (640)
++|+++|++|+|||||+++|++. +....+..+|+|.+.....+.+. +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999999963 22233445678888766555554 67899999999632
Q ss_pred ccccCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcH
Q 006555 418 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVP 487 (640)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~ 487 (640)
. ..........+|++++|+|++++ .....++|+++|+||+|+..........+.+.+.+.
T Consensus 81 ~----------~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~ 150 (192)
T cd01889 81 L----------IRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQ 150 (192)
T ss_pred H----------HHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHH
Confidence 1 12233455678999999999863 111247899999999999754322222232222221
Q ss_pred HHHHhhCCCCCCCcEEEeccccCCCHHHHHHHHHHHH
Q 006555 488 QEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 488 ~~~~~~~~~~~~~~~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
..+... ...+.+++++||++|.|++++++.+...+
T Consensus 151 ~~~~~~--~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 151 KTLEKT--RFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred HHHHhc--CcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 111110 12357899999999999999999887643
No 205
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.79 E-value=9.2e-19 Score=167.62 Aligned_cols=156 Identities=14% Similarity=0.112 Sum_probs=111.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCe--eEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|.+|||||||++++++.... ..... +..+.....+..++. .+.+|||||.... .....
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~ 66 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFP--EEYVP--TVFDHYAVSVTVGGKQYLLGLYDTAGQEDY----------DRLRP 66 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCC--ceeeeeEEEEEECCEEEEEEEEeCCCcccc----------ccccc
Confidence 37999999999999999999987642 12222 444444445556554 4779999998732 22334
Q ss_pred HHHhccceEEEEeecCCCCChhhH--HHHHHHHHhCCCCcEEEEecCCCCCcCC------------ccchHHHHHHHHhc
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNG------------TGSLAGAAAESLML 297 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~L~~~~~~~p~ilV~NK~Dl~~~~------------~~~~~~~~~~~~~~ 297 (640)
.++..+|++++|+|.+++.+.++. .+...++...++.|+++|+||+|+.+.. .....+.......+
T Consensus 67 ~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 146 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEI 146 (174)
T ss_pred ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 567899999999999987666553 2455555545689999999999986532 12233344555667
Q ss_pred CCCCcEEeeccCCCChhHHHHHhccc
Q 006555 298 GFGDPIAISAETGLGMTELYEALRPS 323 (640)
Q Consensus 298 g~~~~i~iSA~~g~gi~eL~~~I~~~ 323 (640)
+...++++||++|.|++++++.+...
T Consensus 147 ~~~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 147 GAHCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred CCCEEEEecCCcCCCHHHHHHHHHHH
Confidence 76678999999999999999988754
No 206
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.79 E-value=1.4e-18 Score=163.91 Aligned_cols=144 Identities=20% Similarity=0.205 Sum_probs=103.7
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
.||+++|++|||||||++++++... .....++++.+.....+.+++. .+.+|||||..+.. ......
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~----------~~~~~~ 69 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTF-DNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFR----------SLIPSY 69 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHH----------HHHHHH
Confidence 3799999999999999999998753 3456777888887777777774 57899999954321 123456
Q ss_pred HhhccEEEEEecccHH-----------HH-HHc--CCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 436 LMRAHVVALVLDAEEV-----------RA-VEE--GRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 436 i~~advvllVvDa~~~-----------~~-~~~--~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
++.+|++++|+|++++ .. ... +.|+++|+||+|+........ +.. . .. ....+++
T Consensus 70 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~--~~~-~----~~----~~~~~~~ 138 (161)
T cd01861 70 IRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVST--EEG-E----KK----AKELNAM 138 (161)
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCH--HHH-H----HH----HHHhCCE
Confidence 7889999999999875 11 112 489999999999964322110 110 0 01 1112478
Q ss_pred EEEeccccCCCHHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
++++||++|.|+++++.++.+.
T Consensus 139 ~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 139 FIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred EEEEeCCCCCCHHHHHHHHHHh
Confidence 9999999999999999998763
No 207
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=1.1e-18 Score=168.40 Aligned_cols=154 Identities=16% Similarity=0.148 Sum_probs=102.8
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|||||||++++.+.. + ...+..|..+.....+.+++. .+.||||||..+.. .. ...+
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~-f-~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~---------~~-~~~~ 69 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDC-Y-PETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYD---------NV-RPLC 69 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-C-CCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhh---------hc-chhh
Confidence 689999999999999999999764 2 233333433333445566665 56799999964432 11 1246
Q ss_pred HhhccEEEEEecccHH----HH----------HHcCCcEEEEEeCCCCCCCccchHHHHHH-HHHcHHHHHhhCCCCCCC
Q 006555 436 LMRAHVVALVLDAEEV----RA----------VEEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 436 i~~advvllVvDa~~~----~~----------~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~ 500 (640)
++++|++|+|+|.++. .. .....|+|||+||+||.+.......+... .+.+..+.++.++...++
T Consensus 70 ~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~ 149 (178)
T cd04131 70 YPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGA 149 (178)
T ss_pred cCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCC
Confidence 7799999999999876 11 12478999999999996431100000000 012334444455555565
Q ss_pred -cEEEeccccCCC-HHHHHHHHHHH
Q 006555 501 -PVVFTSALEGRG-RIAVMHQVIDT 523 (640)
Q Consensus 501 -~~v~iSAk~g~g-v~~l~~~i~~~ 523 (640)
+++++||++|+| |+++|..+.+.
T Consensus 150 ~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 150 EIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred CEEEECccCcCCcCHHHHHHHHHHH
Confidence 799999999995 99999998874
No 208
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.79 E-value=1.5e-18 Score=169.34 Aligned_cols=156 Identities=16% Similarity=0.168 Sum_probs=102.7
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
.+||+++|.++||||||++++..... . ..+..|..+.....+.+++. .+.||||||+.+. ..+ ...
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~---------~~l-~~~ 70 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAF-P-KEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEY---------DRL-RTL 70 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCC-C-cCCCCceEeeeEEEEEECCEEEEEEEEECCCchhh---------hhh-hhh
Confidence 47999999999999999999996542 2 22333333333344556664 5679999996443 212 234
Q ss_pred HHhhccEEEEEecccHH--------HHH------HcCCcEEEEEeCCCCCCCccchHHHHHH-HHHcHHHHHhhCCCCCC
Q 006555 435 NLMRAHVVALVLDAEEV--------RAV------EEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQVTG 499 (640)
Q Consensus 435 ~i~~advvllVvDa~~~--------~~~------~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~ 499 (640)
++++||++|+|||+++. .+. ..+.|++||+||.||.+.....+..... .+.+..+.++.++...+
T Consensus 71 ~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 150 (191)
T cd01875 71 SYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIH 150 (191)
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 67899999999999876 111 1478999999999996542211111110 01122233333333334
Q ss_pred -CcEEEeccccCCCHHHHHHHHHHHH
Q 006555 500 -IPVVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 500 -~~~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
.+++++||++|.||+++|+.+++.+
T Consensus 151 ~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 151 AVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999998755
No 209
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.79 E-value=1.9e-18 Score=163.05 Aligned_cols=142 Identities=21% Similarity=0.261 Sum_probs=96.1
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHHhh
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 438 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 438 (640)
||+++|++|||||||+++|.........++.+ .+ ...+.+.+..+.+|||||+.+.. ..+..++..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~--~~--~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~~~~ 66 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIG--FN--VETVTYKNLKFQVWDLGGQTSIR----------PYWRCYYSN 66 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccC--cC--eEEEEECCEEEEEEECCCCHHHH----------HHHHHHhcC
Confidence 68999999999999999997654332222212 22 23455678899999999964331 234467789
Q ss_pred ccEEEEEecccHH-----------HHHH----cCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEE
Q 006555 439 AHVVALVLDAEEV-----------RAVE----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVV 503 (640)
Q Consensus 439 advvllVvDa~~~-----------~~~~----~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v 503 (640)
+|++|+|+|+++. .... .++|+++|+||+|+.+..... . +...+........+.+++
T Consensus 67 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~----~----i~~~~~~~~~~~~~~~~~ 138 (158)
T cd04151 67 TDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEA----E----ISEKLGLSELKDRTWSIF 138 (158)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHH----H----HHHHhCccccCCCcEEEE
Confidence 9999999999864 1111 368999999999997542111 1 111111111112235799
Q ss_pred EeccccCCCHHHHHHHHHH
Q 006555 504 FTSALEGRGRIAVMHQVID 522 (640)
Q Consensus 504 ~iSAk~g~gv~~l~~~i~~ 522 (640)
++||++|.|++++|+++.+
T Consensus 139 ~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 139 KTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EeeccCCCCHHHHHHHHhc
Confidence 9999999999999998864
No 210
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.79 E-value=3.2e-18 Score=161.40 Aligned_cols=150 Identities=19% Similarity=0.161 Sum_probs=102.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 234 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 234 (640)
+|+++|++|||||||+++|....... ..+ |.......+...+.++.+|||||+. ++..+...++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~--~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~ 64 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT--TIP----TIGFNVETVTYKNLKFQVWDLGGQT----------SIRPYWRCYY 64 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC--cCC----ccCcCeEEEEECCEEEEEEECCCCH----------HHHHHHHHHh
Confidence 58999999999999999997765422 112 2222233456677899999999997 4555667789
Q ss_pred hccceEEEEeecCCCCChhh--HHHHHHHHHh-CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCC----CCcEEeec
Q 006555 235 AKTQFAIFMIDVRSGLHPLD--LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF----GDPIAISA 307 (640)
Q Consensus 235 ~~ad~vl~VvD~s~~~~~~~--~~~~~~L~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~----~~~i~iSA 307 (640)
..+|++++|+|++++.+... ..+...++.. ..++|+++|+||+|+.+... ..+....+..... .+++++||
T Consensus 65 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa 142 (158)
T cd04151 65 SNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS--EAEISEKLGLSELKDRTWSIFKTSA 142 (158)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC--HHHHHHHhCccccCCCcEEEEEeec
Confidence 99999999999987543322 2233333321 24789999999999875421 1111111111111 14899999
Q ss_pred cCCCChhHHHHHhcc
Q 006555 308 ETGLGMTELYEALRP 322 (640)
Q Consensus 308 ~~g~gi~eL~~~I~~ 322 (640)
++|.|++++++.|.+
T Consensus 143 ~~~~gi~~l~~~l~~ 157 (158)
T cd04151 143 IKGEGLDEGMDWLVN 157 (158)
T ss_pred cCCCCHHHHHHHHhc
Confidence 999999999998864
No 211
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.79 E-value=1.7e-18 Score=165.14 Aligned_cols=146 Identities=21% Similarity=0.160 Sum_probs=99.1
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECC--eEEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
.+||+++|.+|||||||++++++.... ....+..+.+.....+..++ ..+.||||||..+ +. .....
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~---------~~-~~~~~ 72 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES---------FR-SITRS 72 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH---------HH-HHHHH
Confidence 379999999999999999999976532 22223333444344455555 4678999999532 22 12346
Q ss_pred HHhhccEEEEEecccHH-------H----HH---HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 435 NLMRAHVVALVLDAEEV-------R----AV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 435 ~i~~advvllVvDa~~~-------~----~~---~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
+++.+|++|+|+|+++. . .. ..+.|+|+|+||+|+........ +.. ..+....+.
T Consensus 73 ~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~--~~~---------~~~~~~~~~ 141 (168)
T cd01866 73 YYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSY--EEG---------EAFAKEHGL 141 (168)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCH--HHH---------HHHHHHcCC
Confidence 77889999999999875 1 11 13689999999999974322110 111 111112356
Q ss_pred cEEEeccccCCCHHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
+++++||++|.|++++|..+.+..
T Consensus 142 ~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 142 IFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999988764
No 212
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.79 E-value=9.9e-19 Score=165.54 Aligned_cols=143 Identities=20% Similarity=0.207 Sum_probs=98.2
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|||||||++++++.... ..+.++..+.....+..++. .+.||||||+.+.. . ....+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~-~~~~~ 69 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA---------S-MRDLY 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCchhheEEEEEEECCEEEEEEEEECCCccccc---------c-hHHHH
Confidence 68999999999999999999976432 23334444444555666665 46789999965442 1 12346
Q ss_pred HhhccEEEEEecccHHH-----------HH----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 436 LMRAHVVALVLDAEEVR-----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 436 i~~advvllVvDa~~~~-----------~~----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
++++|++++|+|+++.. .. ..++|+++|+||+|+........ +. . ..+.. ..+.
T Consensus 70 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~--~~-~----~~~~~----~~~~ 138 (163)
T cd04176 70 IKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSS--AE-G----RALAE----EWGC 138 (163)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCH--HH-H----HHHHH----HhCC
Confidence 77899999999998761 11 14789999999999865322110 00 0 11111 1246
Q ss_pred cEEEeccccCCCHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
+++++||++|.|++++|..+.+.
T Consensus 139 ~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 139 PFMETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred EEEEecCCCCCCHHHHHHHHHHh
Confidence 89999999999999999998764
No 213
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.79 E-value=2.3e-18 Score=168.20 Aligned_cols=157 Identities=18% Similarity=0.181 Sum_probs=109.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCC------ceeecCCCCCceeeeeEEEEEEEC--------------CeeEEEEeCCCCc
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRR------EALVYNTPDDHVTRDIREGLAKLG--------------DLRFKVLDSAGLE 214 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~------~~~v~~~~~~~tT~~~~~~~~~~~--------------~~~~~liDTpG~~ 214 (640)
+|+++|++|+|||||+++|++.. ...+...++ +|.+.......+. +..+.+|||||+.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g--~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERG--ITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcC--CeeeecceEEEecccccccccccccccCceEEEEECCCcH
Confidence 69999999999999999999731 111222334 6666665555554 6789999999985
Q ss_pred cccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCcc--chHHHHH
Q 006555 215 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTG--SLAGAAA 292 (640)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~ 292 (640)
.+.......+..+|++++|+|++++.+..+.+...+.... ++|+++|+||+|+...... ...+...
T Consensus 80 ----------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~ 147 (192)
T cd01889 80 ----------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKK 147 (192)
T ss_pred ----------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHH
Confidence 3444455667889999999999987766654444444333 6799999999998753221 1111111
Q ss_pred H----HHhcCC--CCcEEeeccCCCChhHHHHHhccchH
Q 006555 293 E----SLMLGF--GDPIAISAETGLGMTELYEALRPSVE 325 (640)
Q Consensus 293 ~----~~~~g~--~~~i~iSA~~g~gi~eL~~~I~~~l~ 325 (640)
. +...+. .+++++||++|.|+++|++.+.+.++
T Consensus 148 ~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 148 KLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 1 111122 26799999999999999999988764
No 214
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.78 E-value=1.2e-18 Score=173.05 Aligned_cols=154 Identities=19% Similarity=0.135 Sum_probs=98.3
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHHh
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 437 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 437 (640)
+||+++|.+|||||||+++|++..... ..+.+..+... ..+....+.||||||+..+. . ....+++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~--~~~Tig~~~~~--~~~~~~~l~iwDt~G~e~~~---------~-l~~~~~~ 66 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD--TVSTVGGAFYL--KQWGPYNISIWDTAGREQFH---------G-LGSMYCR 66 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC--CCCccceEEEE--EEeeEEEEEEEeCCCcccch---------h-hHHHHhc
Confidence 589999999999999999999775432 22322223222 23345678999999975432 1 1234678
Q ss_pred hccEEEEEecccHH-----------HHH---HcCCcEEEEEeCCCCCCCccc-------h-HHHHHHHHHcHHHHHhhCC
Q 006555 438 RAHVVALVLDAEEV-----------RAV---EEGRGLVVIVNKMDLLSGRQN-------S-ALYKRVKEAVPQEIQTVIP 495 (640)
Q Consensus 438 ~advvllVvDa~~~-----------~~~---~~~~p~Ilv~NK~Dl~~~~~~-------~-~~~~~~~~~v~~~~~~~~~ 495 (640)
.+|++|+|||+++. ... ..+.|+|||+||+|+.+.... . .....-.+.+..+.++.++
T Consensus 67 ~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a 146 (220)
T cd04126 67 GAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFY 146 (220)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHH
Confidence 99999999999985 011 135899999999999751100 0 0000000111122221111
Q ss_pred C--------------CCCCcEEEeccccCCCHHHHHHHHHHHHH
Q 006555 496 Q--------------VTGIPVVFTSALEGRGRIAVMHQVIDTYQ 525 (640)
Q Consensus 496 ~--------------~~~~~~v~iSAk~g~gv~~l~~~i~~~~~ 525 (640)
. ..+++++++||++|.||+++|..+++.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 147 KRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred HHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1 12368999999999999999999987654
No 215
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.78 E-value=3.4e-18 Score=160.65 Aligned_cols=154 Identities=18% Similarity=0.201 Sum_probs=111.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
+|+++|.+|||||||++++++... +..... ++.+.........+ ..+.+|||||.. .+......
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~ 66 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF--VEEYDP--TIEDSYRKTIVVDGETYTLDILDTAGQE----------EFSAMRDL 66 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CcCcCC--ChhHeEEEEEEECCEEEEEEEEECCChH----------HHHHHHHH
Confidence 589999999999999999998652 233333 45555555566654 578999999987 44455667
Q ss_pred HHhccceEEEEeecCCCCChhh-HHHHHHHHHhC--CCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccC
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHA--PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 309 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~-~~~~~~L~~~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~ 309 (640)
.++.+|++++|+|.+++.+..+ ..+...+.... ...|+++|+||+|+........+.........+. +++++||++
T Consensus 67 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~ 145 (160)
T cd00876 67 YIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGC-PFIETSAKD 145 (160)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCC-cEEEeccCC
Confidence 8899999999999987654443 22233333322 3789999999999987544444444445555554 789999999
Q ss_pred CCChhHHHHHhccc
Q 006555 310 GLGMTELYEALRPS 323 (640)
Q Consensus 310 g~gi~eL~~~I~~~ 323 (640)
|.|++++++.|.+.
T Consensus 146 ~~~i~~l~~~l~~~ 159 (160)
T cd00876 146 NINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998754
No 216
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.78 E-value=3.5e-18 Score=165.39 Aligned_cols=153 Identities=18% Similarity=0.208 Sum_probs=105.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
..+|+++|.+|||||||++++....... ..| |.......+...+..+.+|||||+. ++..++..
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~--~~~----T~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~ 80 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT--TIP----TIGFNVETVEYKNLKFTMWDVGGQD----------KLRPLWRH 80 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc--cCC----ccccceEEEEECCEEEEEEECCCCH----------hHHHHHHH
Confidence 3589999999999999999997654321 112 2222334566678899999999997 55567778
Q ss_pred HHhccceEEEEeecCCCCChhh--HHHHHHHHH-hCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCC-------Cc
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRK-HAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFG-------DP 302 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~--~~~~~~L~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~-------~~ 302 (640)
+++.+|++|+|+|+++..+..+ .++.+.+.. ...+.|+++|+||+|+..... ..+. ...++.. .+
T Consensus 81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i---~~~l~~~~~~~~~~~~ 155 (182)
T PTZ00133 81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMS--TTEV---TEKLGLHSVRQRNWYI 155 (182)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCC--HHHH---HHHhCCCcccCCcEEE
Confidence 8999999999999987554443 122233322 124689999999999865322 1111 1222221 24
Q ss_pred EEeeccCCCChhHHHHHhccchHH
Q 006555 303 IAISAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 303 i~iSA~~g~gi~eL~~~I~~~l~~ 326 (640)
+++||++|.|++++++.|.+.+.+
T Consensus 156 ~~~Sa~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 156 QGCCATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred EeeeCCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999876654
No 217
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.78 E-value=2.7e-18 Score=162.68 Aligned_cols=144 Identities=19% Similarity=0.302 Sum_probs=96.6
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|||||||++++++... .....+....+........++. .+.+|||||..++. .....+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~ 69 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGY-EPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQ----------TMHASY 69 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhh----------hhhHHH
Confidence 5899999999999999999997643 2222222222222333444554 57799999964431 123457
Q ss_pred HhhccEEEEEecccHH----------HHH---HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcE
Q 006555 436 LMRAHVVALVLDAEEV----------RAV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 502 (640)
Q Consensus 436 i~~advvllVvDa~~~----------~~~---~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 502 (640)
++.+|++|+|+|+++. ... ..++|+++|+||+|+.... . +.. .++.+ ..+.++
T Consensus 70 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~--~---~~~-----~~~~~----~~~~~~ 135 (161)
T cd04124 70 YHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV--T---QKK-----FNFAE----KHNLPL 135 (161)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH--H---HHH-----HHHHH----HcCCeE
Confidence 7899999999999875 111 1378999999999985321 0 100 01111 124689
Q ss_pred EEeccccCCCHHHHHHHHHHHHHH
Q 006555 503 VFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 503 v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
+++||++|.|++++|+.+.+...+
T Consensus 136 ~~~Sa~~~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 136 YYVSAADGTNVVKLFQDAIKLAVS 159 (161)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999876554
No 218
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.78 E-value=1.4e-18 Score=165.03 Aligned_cols=148 Identities=22% Similarity=0.215 Sum_probs=98.9
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCce---eecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRV---LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~---~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+|+++|++|||||||+++|++.... .......+|.......+.+++..+.+|||||+.+.. .....+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~~~ 70 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLR----------SLWDKY 70 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhH----------HHHHHH
Confidence 5899999999999999999864211 111222334444445677788999999999975331 123456
Q ss_pred HhhccEEEEEecccHH-----------HHH----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 436 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 436 i~~advvllVvDa~~~-----------~~~----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
+..+|++++|+|+++. ... ..++|+++++||+|+.......+. .+.+..... . ......
T Consensus 71 ~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~----~~~~~~~~~-~-~~~~~~ 144 (167)
T cd04160 71 YAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEI----KEVFQDKAE-E-IGRRDC 144 (167)
T ss_pred hCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHH----HHHhccccc-c-ccCCce
Confidence 7899999999999875 111 247899999999998764322111 111111000 0 112346
Q ss_pred cEEEeccccCCCHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVID 522 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~ 522 (640)
+++++||++|.|+++++++|.+
T Consensus 145 ~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 145 LVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EEEEeeCCCCcCHHHHHHHHhc
Confidence 8999999999999999998864
No 219
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.78 E-value=3.7e-18 Score=165.25 Aligned_cols=148 Identities=19% Similarity=0.207 Sum_probs=99.6
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 436 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 436 (640)
.+||+++|.+|||||||++++.........++.| .+ ...+..++..+.+|||||+.+.. ..+..++
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~--~~--~~~~~~~~~~~~l~D~~G~~~~~----------~~~~~~~ 82 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIG--FN--VETVEYKNLKFTMWDVGGQDKLR----------PLWRHYY 82 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCCccc--cc--eEEEEECCEEEEEEECCCCHhHH----------HHHHHHh
Confidence 4799999999999999999997554332222222 22 23455678899999999964321 2345678
Q ss_pred hhccEEEEEecccHH-----------HHHH----cCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 437 MRAHVVALVLDAEEV-----------RAVE----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 437 ~~advvllVvDa~~~-----------~~~~----~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
+.+|++|+|+|+++. .... ..+|++||+||.|+.+.....+ + ...+..........+
T Consensus 83 ~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~----i----~~~l~~~~~~~~~~~ 154 (182)
T PTZ00133 83 QNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTE----V----TEKLGLHSVRQRNWY 154 (182)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHH----H----HHHhCCCcccCCcEE
Confidence 899999999999875 1111 3589999999999865422111 1 111111111112345
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
++++||++|.|++++|+++.+.+.+
T Consensus 155 ~~~~Sa~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 155 IQGCCATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred EEeeeCCCCCCHHHHHHHHHHHHHH
Confidence 7789999999999999999876543
No 220
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.78 E-value=3.1e-18 Score=165.95 Aligned_cols=151 Identities=19% Similarity=0.216 Sum_probs=99.1
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEE---CCeEEEEEEeCCCCcccccCCchhhHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY---QGRTVYLVDTAGWLQREKEKGPASLSVMQSR 433 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 433 (640)
.+||+++|.+|||||||++++++..... ..+..+.+.....+.. .+..+.+|||||+.+. . ..+.
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---------~-~~~~ 70 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN--TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL---------R-PLWK 70 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCC--cCCccccceeEEEeeccCCCceEEEEEECCCcHhH---------H-HHHH
Confidence 5799999999999999999998765432 2332222322223322 4568999999996432 1 1234
Q ss_pred HHHhhccEEEEEecccHHH-----------H----HHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCC
Q 006555 434 KNLMRAHVVALVLDAEEVR-----------A----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 498 (640)
Q Consensus 434 ~~i~~advvllVvDa~~~~-----------~----~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 498 (640)
.+++.+|++++|+|+++.. . ...++|+++|+||+|+.......+ .+.+.. . .......
T Consensus 71 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~-~~~~~~-----~-~~~~~~~ 143 (183)
T cd04152 71 SYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSE-VEKLLA-----L-HELSAST 143 (183)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHH-HHHHhC-----c-cccCCCC
Confidence 5677899999999998750 1 124689999999999864322111 111000 0 0011112
Q ss_pred CCcEEEeccccCCCHHHHHHHHHHHHHH
Q 006555 499 GIPVVFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 499 ~~~~v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
..+++++||++|.|++++++.|.+.+.+
T Consensus 144 ~~~~~~~SA~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 144 PWHVQPACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred ceEEEEeecccCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999877643
No 221
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.78 E-value=2.7e-18 Score=180.54 Aligned_cols=150 Identities=24% Similarity=0.319 Sum_probs=111.7
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECC-eEEEEEEeCCCCcccccCCchhhHHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG-RTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 436 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 436 (640)
-.|++||.||||||||+|+|++.. ..++++++||.++....+.+++ .++.||||||+.+..... ..+ ....++++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~--~gL-g~~flrhi 233 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEG--AGL-GHRFLKHI 233 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccc--ccH-HHHHHHHH
Confidence 479999999999999999999764 5688999999999998888877 899999999986542111 011 23456778
Q ss_pred hhccEEEEEecccHH-------------HHH------HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCC
Q 006555 437 MRAHVVALVLDAEEV-------------RAV------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 497 (640)
Q Consensus 437 ~~advvllVvDa~~~-------------~~~------~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 497 (640)
+++|++|+|+|+++. ..+ ...+|++||+||+|+...... +.+.+ ++.+.
T Consensus 234 erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~----~~~~~----~l~~~---- 301 (329)
T TIGR02729 234 ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEEL----AELLK----ELKKA---- 301 (329)
T ss_pred HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHH----HHHHH----HHHHH----
Confidence 899999999999842 011 136899999999999754221 11111 12211
Q ss_pred CCCcEEEeccccCCCHHHHHHHHHHH
Q 006555 498 TGIPVVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 498 ~~~~~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
.+.+++++||++++|++++++.+.+.
T Consensus 302 ~~~~vi~iSAktg~GI~eL~~~I~~~ 327 (329)
T TIGR02729 302 LGKPVFPISALTGEGLDELLYALAEL 327 (329)
T ss_pred cCCcEEEEEccCCcCHHHHHHHHHHH
Confidence 13589999999999999999998764
No 222
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.78 E-value=2e-18 Score=172.59 Aligned_cols=158 Identities=16% Similarity=0.141 Sum_probs=105.3
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
.+||+++|.++||||+|++++++.. +. ..+..|..+.....+..++. .+.||||||..++ .. ....
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~-F~-~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~---------~~-~~~~ 80 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDC-YP-ETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYY---------DN-VRPL 80 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCC-CC-CCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhh---------HH-HHHH
Confidence 5799999999999999999999764 22 23333333333344566664 5779999996433 11 2235
Q ss_pred HHhhccEEEEEecccHH----HH-------H---HcCCcEEEEEeCCCCCCCccc-hHHHHHHHHHcHHHHHhhCCCCCC
Q 006555 435 NLMRAHVVALVLDAEEV----RA-------V---EEGRGLVVIVNKMDLLSGRQN-SALYKRVKEAVPQEIQTVIPQVTG 499 (640)
Q Consensus 435 ~i~~advvllVvDa~~~----~~-------~---~~~~p~Ilv~NK~Dl~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~ 499 (640)
++++||++|+|||+++. .. + ..+.|+|||+||+||...... .+....-.+.+..+.++.++...+
T Consensus 81 ~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~ 160 (232)
T cd04174 81 CYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLG 160 (232)
T ss_pred HcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcC
Confidence 77899999999999876 11 1 246799999999998642110 000000012344444555555556
Q ss_pred C-cEEEeccccCC-CHHHHHHHHHHHHHH
Q 006555 500 I-PVVFTSALEGR-GRIAVMHQVIDTYQK 526 (640)
Q Consensus 500 ~-~~v~iSAk~g~-gv~~l~~~i~~~~~~ 526 (640)
+ +++++||++|. ||+++|..++..+.+
T Consensus 161 ~~~~~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 161 AEVYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred CCEEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence 6 69999999998 899999999886543
No 223
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.78 E-value=1.1e-18 Score=173.05 Aligned_cols=151 Identities=23% Similarity=0.213 Sum_probs=103.9
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEE-CC--eEEEEEEeCCCCcccccCCchhhHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY-QG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 433 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~-~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 433 (640)
.+||+++|.+|||||||+++|++..... ...++++.+.....+.+ ++ ..+.+|||||+.+. . ....
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~-~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~---------~-~~~~ 70 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAE-VSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF---------R-SITR 70 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhH---------H-HHHH
Confidence 3799999999999999999999765322 22344455655555555 33 46789999996432 1 1234
Q ss_pred HHHhhccEEEEEecccHH-----------HHHH----cCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCC
Q 006555 434 KNLMRAHVVALVLDAEEV-----------RAVE----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 498 (640)
Q Consensus 434 ~~i~~advvllVvDa~~~-----------~~~~----~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 498 (640)
.+++++|++|+|+|+++. .... ...|++||+||+|+....... .+....++...
T Consensus 71 ~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~-----------~~~~~~~~~~~ 139 (211)
T cd04111 71 SYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVT-----------REEAEKLAKDL 139 (211)
T ss_pred HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccC-----------HHHHHHHHHHh
Confidence 577899999999999875 1111 246789999999997642211 01111111223
Q ss_pred CCcEEEeccccCCCHHHHHHHHHHHHHHHhc
Q 006555 499 GIPVVFTSALEGRGRIAVMHQVIDTYQKWCL 529 (640)
Q Consensus 499 ~~~~v~iSAk~g~gv~~l~~~i~~~~~~~~~ 529 (640)
+++++++||++|.|++++|+.|.+.+.+...
T Consensus 140 ~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~~ 170 (211)
T cd04111 140 GMKYIETSARTGDNVEEAFELLTQEIYERIK 170 (211)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 4789999999999999999999987665543
No 224
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.78 E-value=1.3e-18 Score=169.16 Aligned_cols=147 Identities=20% Similarity=0.204 Sum_probs=100.6
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|||||||+++|++.... ....+..+.+.....+.+++. .+.+|||||..+.. ......
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~----------~~~~~~ 69 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFS-ESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFR----------SLNNSY 69 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH----------hhHHHH
Confidence 48999999999999999999976532 222333334444445556554 56799999954321 123456
Q ss_pred HhhccEEEEEecccHH-------H----H---HHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 436 LMRAHVVALVLDAEEV-------R----A---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 436 i~~advvllVvDa~~~-------~----~---~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
++.+|++|+|+|+++. . . .....|+|+|+||+|+.+..... .+....++...+++
T Consensus 70 ~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~-----------~~~~~~~~~~~~~~ 138 (188)
T cd04125 70 YRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVD-----------SNIAKSFCDSLNIP 138 (188)
T ss_pred ccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCC-----------HHHHHHHHHHcCCe
Confidence 7899999999999876 1 1 11357999999999997543211 11111111123568
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
++++||++|.|++++|+.+.+.+.+
T Consensus 139 ~~evSa~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 139 FFETSAKQSINVEEAFILLVKLIIK 163 (188)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999887654
No 225
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.78 E-value=2.7e-18 Score=163.71 Aligned_cols=157 Identities=18% Similarity=0.175 Sum_probs=111.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
++|+++|.+|||||||++++.+.... ..... ++.+.....+..++ ..+.+|||||+. ++..+..
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 67 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI--ESYDP--TIEDSYRKQVEIDGRQCDLEILDTAGTE----------QFTAMRE 67 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCC--cchheEEEEEEECCEEEEEEEEeCCCcc----------cchhhhH
Confidence 47999999999999999999976542 22222 34344444455544 578999999987 4445666
Q ss_pred HHHhccceEEEEeecCCCCChhhH-HHHHHHHHh--CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeecc
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~ 308 (640)
.++..++.+++|+|.+++.+.+.. .+.+.+.+. ..+.|+++|+||+|+........++........+..+++++||+
T Consensus 68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 147 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSAR 147 (168)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCC
Confidence 778899999999999986655542 233333332 34789999999999976554444444444455553468999999
Q ss_pred CCCChhHHHHHhccch
Q 006555 309 TGLGMTELYEALRPSV 324 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~l 324 (640)
+|.|++++++.+...+
T Consensus 148 ~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 148 KRTNVDEVFIDLVRQI 163 (168)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987644
No 226
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.78 E-value=2e-18 Score=167.31 Aligned_cols=157 Identities=15% Similarity=0.102 Sum_probs=103.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEE---ECCeeEEEEeCCCCccccCccchHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAK---LGDLRFKVLDSAGLETEATSGSILDRTAGMT 230 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 230 (640)
.+|+++|.+|||||||++++++.... ...|. .+.+.....+. ..+..+.+|||||+. ++..++
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~--~~~~t--~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~ 69 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPT--KGFNTEKIKVSLGNSKGITFHFWDVGGQE----------KLRPLW 69 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcC--CcCCc--cccceeEEEeeccCCCceEEEEEECCCcH----------hHHHHH
Confidence 48999999999999999999886543 22221 22222222332 245789999999986 455566
Q ss_pred HHHHhccceEEEEeecCCCCChhhHH-HHHHHHH--hCCCCcEEEEecCCCCCcCCccchHHHHHHH--HhcCC---CCc
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRK--HAPQIKPIVAMNKCESLHNGTGSLAGAAAES--LMLGF---GDP 302 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~L~~--~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~--~~~g~---~~~ 302 (640)
..+++.+|++++|+|++++.+.++.. +...+.+ ...++|+++|+||+|+..... ..+..... ...+. ..+
T Consensus 70 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 147 (183)
T cd04152 70 KSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALS--VSEVEKLLALHELSASTPWHV 147 (183)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCC--HHHHHHHhCccccCCCCceEE
Confidence 67789999999999998764443311 1221212 123789999999999865322 11111111 11111 146
Q ss_pred EEeeccCCCChhHHHHHhccchHH
Q 006555 303 IAISAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 303 i~iSA~~g~gi~eL~~~I~~~l~~ 326 (640)
+++||++|.|++++++.|.+.+.+
T Consensus 148 ~~~SA~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 148 QPACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred EEeecccCCCHHHHHHHHHHHHHH
Confidence 899999999999999999887754
No 227
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.78 E-value=1.2e-18 Score=167.50 Aligned_cols=153 Identities=18% Similarity=0.218 Sum_probs=100.2
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|||||||+.+++... + ...+..+..+.....+.+++. .+.||||||..+.. .....+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~-f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~~~~ 69 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA-F-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD----------RLRPLS 69 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-C-CCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhh----------hhhhhh
Confidence 689999999999999999999653 2 233334444444445556664 67799999964332 112346
Q ss_pred HhhccEEEEEecccHH----H----H---H---HcCCcEEEEEeCCCCCCCccch-HHHHHHHHHcHHHHHhhCCCCCC-
Q 006555 436 LMRAHVVALVLDAEEV----R----A---V---EEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVTG- 499 (640)
Q Consensus 436 i~~advvllVvDa~~~----~----~---~---~~~~p~Ilv~NK~Dl~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~- 499 (640)
++++|++|+|+|+++. . + . ..+.|+|||+||+|+.+..... ...+...+.+..+..+.++...+
T Consensus 70 ~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 149 (174)
T cd01871 70 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 149 (174)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCC
Confidence 7789999999999875 0 1 1 1368999999999996532111 11010011232333333333233
Q ss_pred CcEEEeccccCCCHHHHHHHHHH
Q 006555 500 IPVVFTSALEGRGRIAVMHQVID 522 (640)
Q Consensus 500 ~~~v~iSAk~g~gv~~l~~~i~~ 522 (640)
.+++++||++|.|++++|+.+.+
T Consensus 150 ~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 150 VKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred cEEEEecccccCCHHHHHHHHHH
Confidence 58999999999999999998875
No 228
>PTZ00369 Ras-like protein; Provisional
Probab=99.78 E-value=2.2e-18 Score=167.86 Aligned_cols=147 Identities=24% Similarity=0.255 Sum_probs=100.0
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
.+||+++|.+|||||||++++.+... ...+..|..+.....+.+++. .+.+|||||+.+.. .+ ...
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~l-~~~ 72 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHF--IDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYS---------AM-RDQ 72 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC--CcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccch---------hh-HHH
Confidence 47999999999999999999997643 223333333334445556665 46689999975432 11 234
Q ss_pred HHhhccEEEEEecccHH-----------HHH----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCC
Q 006555 435 NLMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 499 (640)
Q Consensus 435 ~i~~advvllVvDa~~~-----------~~~----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 499 (640)
+++.+|++++|+|+++. ... ..+.|+++|+||+|+.+...... +.. .+..+ ..+
T Consensus 73 ~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~--~~~-----~~~~~----~~~ 141 (189)
T PTZ00369 73 YMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVST--GEG-----QELAK----SFG 141 (189)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCH--HHH-----HHHHH----HhC
Confidence 67789999999999875 111 13679999999999865422110 000 01111 124
Q ss_pred CcEEEeccccCCCHHHHHHHHHHHHHH
Q 006555 500 IPVVFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 500 ~~~v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
.+++++||++|.|++++|+++.+.+.+
T Consensus 142 ~~~~e~Sak~~~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 142 IPFLETSAKQRVNVDEAFYELVREIRK 168 (189)
T ss_pred CEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999876543
No 229
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=8.6e-19 Score=155.22 Aligned_cols=146 Identities=23% Similarity=0.241 Sum_probs=111.6
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
-+||++||+.|||||+|+.+++.. .+..+..+.+.+|.....++++|. +++||||+|+.++. ..+..
T Consensus 7 lfkivlvgnagvgktclvrrftqg-lfppgqgatigvdfmiktvev~gekiklqiwdtagqerfr----------sitqs 75 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQG-LFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFR----------SITQS 75 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhcc-CCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHH----------HHHHH
Confidence 579999999999999999999843 455555555667777777777775 56799999976553 45678
Q ss_pred HHhhccEEEEEecccHH-------HH-------HHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 435 NLMRAHVVALVLDAEEV-------RA-------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 435 ~i~~advvllVvDa~~~-------~~-------~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
+++.||++|+|||++-. ++ .....--|+|+||+|+.+. ++++..+++.++.....
T Consensus 76 yyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~dr-----------revp~qigeefs~~qdm 144 (213)
T KOG0095|consen 76 YYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADR-----------REVPQQIGEEFSEAQDM 144 (213)
T ss_pred HhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhh-----------hhhhHHHHHHHHHhhhh
Confidence 99999999999999742 11 1233456899999999765 33455555555555677
Q ss_pred cEEEeccccCCCHHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
.++++||++..|+++||..+...+
T Consensus 145 yfletsakea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 145 YFLETSAKEADNVEKLFLDLACRL 168 (213)
T ss_pred hhhhhcccchhhHHHHHHHHHHHH
Confidence 899999999999999999887543
No 230
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.78 E-value=4.4e-18 Score=163.63 Aligned_cols=151 Identities=18% Similarity=0.195 Sum_probs=103.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
..+|+++|.+|||||||++++...... ...|. +..+. ......+..+.+|||||+. ++......
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~--~~~~t--~~~~~--~~~~~~~~~l~l~D~~G~~----------~~~~~~~~ 76 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV--TTIPT--IGFNV--ETVTYKNISFTVWDVGGQD----------KIRPLWRH 76 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC--CcCCc--cccce--EEEEECCEEEEEEECCCCh----------hhHHHHHH
Confidence 368999999999999999999754432 22221 33332 3455677899999999987 45566777
Q ss_pred HHhccceEEEEeecCCCCChhh-HHHH-HHHHH-hCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCC-------Cc
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLD-LEVG-KWLRK-HAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFG-------DP 302 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~-~~~~-~~L~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~-------~~ 302 (640)
++++||++|+|+|++++.+.++ .+.+ +.+.. ...+.|+++|+||+|+..... ..+... .++.. .+
T Consensus 77 ~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~---~~~~~~~~~~~~~~ 151 (175)
T smart00177 77 YYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMK--AAEITE---KLGLHSIRDRNWYI 151 (175)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCC--HHHHHH---HhCccccCCCcEEE
Confidence 8999999999999997655443 1222 22222 124689999999999875322 111111 12221 35
Q ss_pred EEeeccCCCChhHHHHHhccch
Q 006555 303 IAISAETGLGMTELYEALRPSV 324 (640)
Q Consensus 303 i~iSA~~g~gi~eL~~~I~~~l 324 (640)
+++||++|.|+++++++|.+.+
T Consensus 152 ~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 152 QPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred EEeeCCCCCCHHHHHHHHHHHh
Confidence 6899999999999999987653
No 231
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.78 E-value=1.6e-18 Score=163.68 Aligned_cols=144 Identities=20% Similarity=0.218 Sum_probs=98.2
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|||||||+++|++... .....+..+.+.....+.+++. .+.+|||||+.+.. ......
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~----------~~~~~~ 69 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKF-KEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFR----------SVTRSY 69 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHH----------HhHHHH
Confidence 4899999999999999999997653 2222333333444444555554 67899999964331 123456
Q ss_pred HhhccEEEEEecccHH----------H----HHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 436 LMRAHVVALVLDAEEV----------R----AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 436 i~~advvllVvDa~~~----------~----~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
++.+|++++|+|+++. . ....+.|+++|+||+|+........ +.. .... ...+.+
T Consensus 70 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~--~~~-----~~~~----~~~~~~ 138 (161)
T cd04113 70 YRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTF--LEA-----SRFA----QENGLL 138 (161)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCH--HHH-----HHHH----HHcCCE
Confidence 7789999999999975 1 1124789999999999975422110 010 0111 122468
Q ss_pred EEEeccccCCCHHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
++++||++|.|++++|+++.+.
T Consensus 139 ~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 139 FLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999999999998763
No 232
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=2.9e-18 Score=151.89 Aligned_cols=161 Identities=17% Similarity=0.181 Sum_probs=121.6
Q ss_pred ccCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHH
Q 006555 150 INLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTA 227 (640)
Q Consensus 150 ~~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~ 227 (640)
.+.+++|++||..|||||+|+.+++..-+ .+..|+++..|....+++++| .++++|||+|++ ++.
T Consensus 4 ykflfkivlvgnagvgktclvrrftqglf---ppgqgatigvdfmiktvev~gekiklqiwdtagqe----------rfr 70 (213)
T KOG0095|consen 4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLF---PPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQE----------RFR 70 (213)
T ss_pred cceeEEEEEEccCCcCcchhhhhhhccCC---CCCCCceeeeeEEEEEEEECCeEEEEEEeeccchH----------HHH
Confidence 34578999999999999999999997543 334456677888888888877 578999999999 888
Q ss_pred HHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHH---h-CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcE
Q 006555 228 GMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRK---H-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPI 303 (640)
Q Consensus 228 ~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~---~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i 303 (640)
..+..|++.|+.+++|+|++...++. -+-+||++ . ....-.|+|+||+|+.+.+++..... +++.+.-..-..
T Consensus 71 sitqsyyrsahalilvydiscqpsfd--clpewlreie~yan~kvlkilvgnk~d~~drrevp~qig-eefs~~qdmyfl 147 (213)
T KOG0095|consen 71 SITQSYYRSAHALILVYDISCQPSFD--CLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIG-EEFSEAQDMYFL 147 (213)
T ss_pred HHHHHHhhhcceEEEEEecccCcchh--hhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHH-HHHHHhhhhhhh
Confidence 99999999999999999999766655 33455554 2 22445689999999988765543322 222222222357
Q ss_pred EeeccCCCChhHHHHHhccchHH
Q 006555 304 AISAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 304 ~iSA~~g~gi~eL~~~I~~~l~~ 326 (640)
++||+..+|++.|+..+.-.+-.
T Consensus 148 etsakea~nve~lf~~~a~rli~ 170 (213)
T KOG0095|consen 148 ETSAKEADNVEKLFLDLACRLIS 170 (213)
T ss_pred hhcccchhhHHHHHHHHHHHHHH
Confidence 99999999999999888765543
No 233
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.78 E-value=2.2e-18 Score=163.72 Aligned_cols=146 Identities=18% Similarity=0.175 Sum_probs=98.4
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
.+||+++|.+|+|||||++++.+.... ....+..+.+.....+.+++. .+.||||||+.+. . .....
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------~-~~~~~ 71 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFS-ERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERF---------R-TITQS 71 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCc-ccCCCccceEEEEEEEEECCEEEEEEEEECCChHHH---------H-HHHHH
Confidence 479999999999999999999865422 222222333444455666764 6789999995322 1 22345
Q ss_pred HHhhccEEEEEecccHH----------H-HH---HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 435 NLMRAHVVALVLDAEEV----------R-AV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 435 ~i~~advvllVvDa~~~----------~-~~---~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
.++.+|++++|+|+++. . .. ..+.|+++|+||+|+.+.+... .+.. .++.+. ....
T Consensus 72 ~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~-----~~~~~~---~~~~ 141 (165)
T cd01864 72 YYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVL--FEEA-----CTLAEK---NGML 141 (165)
T ss_pred HhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccC--HHHH-----HHHHHH---cCCc
Confidence 67789999999999986 1 11 1368999999999997543211 0110 011111 1124
Q ss_pred cEEEeccccCCCHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
+++++||++|.|++++|+.+.+.
T Consensus 142 ~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 142 AVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999998753
No 234
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=2.6e-18 Score=184.20 Aligned_cols=154 Identities=22% Similarity=0.264 Sum_probs=112.3
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECC-eEEEEEEeCCCCcccccCCchhhHHHHHHHHHh
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG-RTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 437 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 437 (640)
.|+|||.||||||||+|+|++.. ..++++|+||+.+..+.+.+++ +++.++||||+.+..... ..+ ..+..+++.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~--~~L-g~~~l~~i~ 236 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEG--AGL-GIRFLKHLE 236 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccch--hhH-HHHHHHHHH
Confidence 69999999999999999999875 5899999999999999988865 579999999987642111 011 234457889
Q ss_pred hccEEEEEeccc---H--H--------HH-HH-----cCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCC
Q 006555 438 RAHVVALVLDAE---E--V--------RA-VE-----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 498 (640)
Q Consensus 438 ~advvllVvDa~---~--~--------~~-~~-----~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 498 (640)
++|++++|+|++ . . .. .. .++|+|+|+||+|+...... .+.+ + ++.+.+. .
T Consensus 237 radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el---~~~l-~----~l~~~~~--~ 306 (390)
T PRK12298 237 RCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA---EERA-K----AIVEALG--W 306 (390)
T ss_pred hCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH---HHHH-H----HHHHHhC--C
Confidence 999999999987 1 1 11 11 36899999999999754221 1111 1 1111111 1
Q ss_pred CCcEEEeccccCCCHHHHHHHHHHHHHH
Q 006555 499 GIPVVFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 499 ~~~~v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
..+++++||+++.|++++++.|.+.+.+
T Consensus 307 ~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 307 EGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 2378999999999999999998876544
No 235
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.78 E-value=2.1e-18 Score=170.60 Aligned_cols=152 Identities=21% Similarity=0.230 Sum_probs=108.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCC------------------------C----CCceeeeeEEEEEEECCeeEE
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNT------------------------P----DDHVTRDIREGLAKLGDLRFK 206 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~------------------------~----~~~tT~~~~~~~~~~~~~~~~ 206 (640)
+|+|+|++|+|||||+++|+....+++.+. . ..++|++.....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 489999999999999999987654443211 0 023788988888889999999
Q ss_pred EEeCCCCccccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccc
Q 006555 207 VLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS 286 (640)
Q Consensus 207 liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~ 286 (640)
+|||||+. ++...+..++..+|++++|+|++.+....+.....++... ...++|+|+||+|+.......
T Consensus 81 liDTpG~~----------~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~-~~~~iIvviNK~D~~~~~~~~ 149 (208)
T cd04166 81 IADTPGHE----------QYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLL-GIRHVVVAVNKMDLVDYSEEV 149 (208)
T ss_pred EEECCcHH----------HHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHc-CCCcEEEEEEchhcccCCHHH
Confidence 99999986 4444556678999999999999988766665555555544 124578899999987532211
Q ss_pred h----HHHHHHHHhcCCC--CcEEeeccCCCChhHHH
Q 006555 287 L----AGAAAESLMLGFG--DPIAISAETGLGMTELY 317 (640)
Q Consensus 287 ~----~~~~~~~~~~g~~--~~i~iSA~~g~gi~eL~ 317 (640)
. .+....+..+++. +++++||++|.|+++..
T Consensus 150 ~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~ 186 (208)
T cd04166 150 FEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSRS 186 (208)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccCC
Confidence 1 1122233455643 47999999999998643
No 236
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.78 E-value=2.9e-18 Score=162.09 Aligned_cols=145 Identities=21% Similarity=0.190 Sum_probs=101.8
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECC--eEEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|++|+|||||++++++... .....+.++.+.....+.+++ ..+.+|||||..+. . ......
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---------~-~~~~~~ 69 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERF---------R-SITSSY 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHH---------H-HHHHHH
Confidence 5899999999999999999997653 333444445555555666666 46789999995332 1 223456
Q ss_pred HhhccEEEEEecccHH-------HHH----H---cCCcEEEEEeCCCCCCCccc-hHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 436 LMRAHVVALVLDAEEV-------RAV----E---EGRGLVVIVNKMDLLSGRQN-SALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 436 i~~advvllVvDa~~~-------~~~----~---~~~p~Ilv~NK~Dl~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
++.+|++++|+|++++ ... . .++|+++|+||+|+...... .+..+. +. ...++
T Consensus 70 ~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~--------~~----~~~~~ 137 (164)
T smart00175 70 YRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEA--------FA----EEHGL 137 (164)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHH--------HH----HHcCC
Confidence 7789999999999876 111 1 46899999999998753221 111111 11 12256
Q ss_pred cEEEeccccCCCHHHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDTYQ 525 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~~~ 525 (640)
+++++||++|.|++++++.+.+.+.
T Consensus 138 ~~~e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 138 PFFETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 7999999999999999999987653
No 237
>PLN03110 Rab GTPase; Provisional
Probab=99.78 E-value=2.5e-18 Score=171.12 Aligned_cols=149 Identities=19% Similarity=0.225 Sum_probs=105.6
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHH
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 433 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 433 (640)
..+||+++|++|||||||+++|++... .....+.+..+.....+.+++. .+.||||||+.+. . ....
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~-~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~---------~-~~~~ 79 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEF-CLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY---------R-AITS 79 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHH---------H-HHHH
Confidence 358999999999999999999997653 3333455555665566666664 7789999995432 1 1234
Q ss_pred HHHhhccEEEEEecccHH-------HHH-------HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCC
Q 006555 434 KNLMRAHVVALVLDAEEV-------RAV-------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 499 (640)
Q Consensus 434 ~~i~~advvllVvDa~~~-------~~~-------~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 499 (640)
.+++.+|++|+|+|+++. .++ ..+.|+++|+||+|+.+...... +....++...+
T Consensus 80 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~-----------~~~~~l~~~~~ 148 (216)
T PLN03110 80 AYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAE-----------EDGQALAEKEG 148 (216)
T ss_pred HHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCH-----------HHHHHHHHHcC
Confidence 577899999999999865 111 14689999999999965432111 11111112236
Q ss_pred CcEEEeccccCCCHHHHHHHHHHHHHH
Q 006555 500 IPVVFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 500 ~~~v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
++++++||++|.|++++|+.+...+.+
T Consensus 149 ~~~~e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 149 LSFLETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 799999999999999999999876654
No 238
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.78 E-value=2.5e-18 Score=162.27 Aligned_cols=142 Identities=18% Similarity=0.225 Sum_probs=96.0
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCc--eeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHH
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDR--VLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 436 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~--~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 436 (640)
+|+++|.+|||||||+++|++... ..+.++.|.+.. .+..++..+.+|||||..+.. .....++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~----~~~~~~~~~~l~Dt~G~~~~~----------~~~~~~~ 66 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE----SFEKGNLSFTAFDMSGQGKYR----------GLWEHYY 66 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE----EEEECCEEEEEEECCCCHhhH----------HHHHHHH
Confidence 589999999999999999997642 233444454332 345678899999999964331 1234567
Q ss_pred hhccEEEEEecccHHH-----------HH------HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCC
Q 006555 437 MRAHVVALVLDAEEVR-----------AV------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 499 (640)
Q Consensus 437 ~~advvllVvDa~~~~-----------~~------~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 499 (640)
+.+|++|+|+|+++.. .. ..++|+++|+||+|+.+.....+ +.+ .+.........
T Consensus 67 ~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~----~~~----~l~~~~~~~~~ 138 (162)
T cd04157 67 KNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVK----ITQ----LLGLENIKDKP 138 (162)
T ss_pred ccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHH----HHH----HhCCccccCce
Confidence 8999999999998751 11 13689999999999975422111 111 11000001112
Q ss_pred CcEEEeccccCCCHHHHHHHHHH
Q 006555 500 IPVVFTSALEGRGRIAVMHQVID 522 (640)
Q Consensus 500 ~~~v~iSAk~g~gv~~l~~~i~~ 522 (640)
.+++++||++|.|++++|++|.+
T Consensus 139 ~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 139 WHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EEEEEeeCCCCCchHHHHHHHhc
Confidence 46899999999999999998864
No 239
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.78 E-value=5.6e-18 Score=163.86 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=99.2
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 436 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 436 (640)
.+||+++|.+|||||||++++........ .|++..+. ..++.++..+.||||||+.+. . ..+..++
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~~--~pt~g~~~--~~~~~~~~~~~i~D~~Gq~~~---------~-~~~~~~~ 82 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNV--ETVEYKNISFTVWDVGGQDKI---------R-PLWRHYF 82 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCccc--cCCcceeE--EEEEECCEEEEEEECCCCHHH---------H-HHHHHHh
Confidence 47999999999999999999986543322 23222332 245677889999999996332 1 2244678
Q ss_pred hhccEEEEEecccHH-----------HHH----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 437 MRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 437 ~~advvllVvDa~~~-----------~~~----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
+++|++|+|+|+++. ... ..+.|++||+||+|+.+..+..+ +. ..+.-.........
T Consensus 83 ~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~----~~----~~l~l~~~~~~~~~ 154 (181)
T PLN00223 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAE----IT----DKLGLHSLRQRHWY 154 (181)
T ss_pred ccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHH----HH----HHhCccccCCCceE
Confidence 899999999999975 111 13689999999999976532211 11 11110000011234
Q ss_pred EEEeccccCCCHHHHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVIDTYQ 525 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~~~~ 525 (640)
++++||++|+|++++|+++.+.+.
T Consensus 155 ~~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 155 IQSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred EEeccCCCCCCHHHHHHHHHHHHh
Confidence 668999999999999999987654
No 240
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.78 E-value=2.1e-18 Score=164.37 Aligned_cols=143 Identities=15% Similarity=0.121 Sum_probs=95.5
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCce-eecCcccceeeeEEEEEEECC--eEEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRV-LVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~-~~~~~~gtT~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
+||+++|.+|||||||+++++..... ...++.+. +.....+..++ ..+.+|||||+.+... ....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~~ 68 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGV--EVHPLDFHTNRGKIRFNVWDTAGQEKFGG----------LRDG 68 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee--EEEEEEEEECCEEEEEEEEECCCChhhcc----------ccHH
Confidence 48999999999999999999855321 12222222 22223333333 4778999999754321 1123
Q ss_pred HHhhccEEEEEecccHHH-------------HHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 435 NLMRAHVVALVLDAEEVR-------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 435 ~i~~advvllVvDa~~~~-------------~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
++..+|++|+|+|+++.. ....++|+++|+||+|+.......+ . .++ ......+
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~---~------~~~----~~~~~~~ 135 (166)
T cd00877 69 YYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAK---Q------ITF----HRKKNLQ 135 (166)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHH---H------HHH----HHHcCCE
Confidence 566899999999999760 1112799999999999974321110 0 011 1123568
Q ss_pred EEEeccccCCCHHHHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVIDTYQ 525 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~~~~ 525 (640)
++++||++|.|++++|+++.+.+.
T Consensus 136 ~~e~Sa~~~~~v~~~f~~l~~~~~ 159 (166)
T cd00877 136 YYEISAKSNYNFEKPFLWLARKLL 159 (166)
T ss_pred EEEEeCCCCCChHHHHHHHHHHHH
Confidence 999999999999999999987654
No 241
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.78 E-value=3.6e-18 Score=167.73 Aligned_cols=148 Identities=20% Similarity=0.148 Sum_probs=101.4
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
.+||+++|.+|||||||++++.+... .....+..+.+.....+..++. .+.||||||+.... .....
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~----------~~~~~ 74 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTF-SGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFR----------TITST 74 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHH----------HHHHH
Confidence 58999999999999999999997642 2222333334444445555554 67899999964331 12345
Q ss_pred HHhhccEEEEEecccHHH-------------HHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 435 NLMRAHVVALVLDAEEVR-------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 435 ~i~~advvllVvDa~~~~-------------~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
+++.+|++++|+|+++.. ......|++||+||+|+.+...... +.. . .+. ...+.+
T Consensus 75 ~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~--~~~-~----~~~----~~~~~~ 143 (199)
T cd04110 75 YYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVET--EDA-Y----KFA----GQMGIS 143 (199)
T ss_pred HhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCH--HHH-H----HHH----HHcCCE
Confidence 778899999999998761 1123589999999999976432110 000 0 111 112468
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
++++||++|.|++++|+++.+.+..
T Consensus 144 ~~e~Sa~~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 144 LFETSAKENINVEEMFNCITELVLR 168 (199)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999887643
No 242
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.78 E-value=5.7e-18 Score=162.87 Aligned_cols=146 Identities=16% Similarity=0.181 Sum_probs=98.3
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 436 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 436 (640)
.+||+++|.+|||||||++++...... ...|.+..+. ..+.+++..+.+|||||+.+.. .....++
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~--~~~~t~~~~~--~~~~~~~~~l~l~D~~G~~~~~----------~~~~~~~ 78 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV--TTIPTIGFNV--ETVTYKNISFTVWDVGGQDKIR----------PLWRHYY 78 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC--CcCCccccce--EEEEECCEEEEEEECCCChhhH----------HHHHHHh
Confidence 589999999999999999999754322 2233333332 2345678899999999964331 2344668
Q ss_pred hhccEEEEEecccHH-----------HHH----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 437 MRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 437 ~~advvllVvDa~~~-----------~~~----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
++||++|+|+|+++. ... ..+.|++||+||+|+.+.....+.. ..+.........+.
T Consensus 79 ~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~--------~~~~~~~~~~~~~~ 150 (175)
T smart00177 79 TNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEIT--------EKLGLHSIRDRNWY 150 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHH--------HHhCccccCCCcEE
Confidence 899999999999875 111 1357999999999997543211111 11111111122345
Q ss_pred EEEeccccCCCHHHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
++++||++|.|++++|++|.+..
T Consensus 151 ~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 151 IQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHh
Confidence 77899999999999999987653
No 243
>PRK11058 GTPase HflX; Provisional
Probab=99.77 E-value=1.9e-18 Score=187.29 Aligned_cols=150 Identities=21% Similarity=0.303 Sum_probs=111.2
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe-EEEEEEeCCCCcccccCCchhhHHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR-TVYLVDTAGWLQREKEKGPASLSVMQSRKNL 436 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 436 (640)
.+|+++|.||||||||+|+|++.+.. +.+.+|+|+|+....+.+.+. .+.+|||||+.+.......+. ...+...+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~--f~~tl~~~ 274 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAA--FKATLQET 274 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHH--HHHHHHHh
Confidence 58999999999999999999987644 788999999998888887664 899999999854311111122 24466778
Q ss_pred hhccEEEEEecccHH----H------HH----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc-
Q 006555 437 MRAHVVALVLDAEEV----R------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP- 501 (640)
Q Consensus 437 ~~advvllVvDa~~~----~------~~----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~- 501 (640)
..||++|+|+|++++ . .+ ..++|+++|+||+|+.+... . . +.. .. .+.+
T Consensus 275 ~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~--~---~----~~~--~~-----~~~~~ 338 (426)
T PRK11058 275 RQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE--P---R----IDR--DE-----ENKPI 338 (426)
T ss_pred hcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh--H---H----HHH--Hh-----cCCCc
Confidence 899999999999875 1 01 13689999999999974311 0 0 000 00 1233
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
++++||++|.|++++++.+.+.+..
T Consensus 339 ~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 339 RVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 5889999999999999999887643
No 244
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.77 E-value=2.5e-18 Score=166.80 Aligned_cols=152 Identities=16% Similarity=0.123 Sum_probs=99.7
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEEC-C--eEEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ-G--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
+||+++|.+|||||||+++|++... . ..+..++.+.....+... + ..+.||||||+.+. ... ...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~-~-~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~---------~~~-~~~ 68 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKF-P-EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEY---------DRL-RPL 68 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcC-C-CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhH---------HHH-HHH
Confidence 4899999999999999999997642 2 233333333333334443 3 36789999996432 111 223
Q ss_pred HHhhccEEEEEecccHH--------HHH------HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 435 NLMRAHVVALVLDAEEV--------RAV------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 435 ~i~~advvllVvDa~~~--------~~~------~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
+++.+|++++|+|+++. ... ..+.|+|+|+||+|+....... +.+..+..+.++...+.
T Consensus 69 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-------~~v~~~~~~~~~~~~~~ 141 (187)
T cd04132 69 SYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLD-------RKVTPAQAESVAKKQGA 141 (187)
T ss_pred hCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcccc-------CCcCHHHHHHHHHHcCC
Confidence 66789999999999875 011 1368999999999997542110 01111111111122234
Q ss_pred -cEEEeccccCCCHHHHHHHHHHHHHHHh
Q 006555 501 -PVVFTSALEGRGRIAVMHQVIDTYQKWC 528 (640)
Q Consensus 501 -~~v~iSAk~g~gv~~l~~~i~~~~~~~~ 528 (640)
+++++||++|.|++++|+.+.+.+....
T Consensus 142 ~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 170 (187)
T cd04132 142 FAYLECSAKTMENVEEVFDTAIEEALKKE 170 (187)
T ss_pred cEEEEccCCCCCCHHHHHHHHHHHHHhhh
Confidence 8999999999999999999988765443
No 245
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.77 E-value=3.6e-18 Score=161.73 Aligned_cols=146 Identities=22% Similarity=0.225 Sum_probs=97.6
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCccc-ceeeeEEEEEEEC---CeEEEEEEeCCCCcccccCCchhhHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAG-LTRDSVRVHFEYQ---GRTVYLVDTAGWLQREKEKGPASLSVMQSR 433 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~g-tT~d~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 433 (640)
+||+++|.+|||||||+++|.+........+.. +..+.....+.++ ..++.+|||||+... .. ...
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~~-~~~ 70 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELY---------SD-MVS 70 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHH---------HH-HHH
Confidence 589999999999999999998542222233333 3344444444442 357889999995322 11 234
Q ss_pred HHHhhccEEEEEecccHHH-----------H--HHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 434 KNLMRAHVVALVLDAEEVR-----------A--VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 434 ~~i~~advvllVvDa~~~~-----------~--~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
.+++.+|++++|+|+++.. . ...+.|+|+|+||+|+.+..+.... ..+.+....+.
T Consensus 71 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-----------~~~~~~~~~~~ 139 (164)
T cd04101 71 NYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDA-----------QAQAFAQANQL 139 (164)
T ss_pred HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHH-----------HHHHHHHHcCC
Confidence 5678899999999998751 1 1136899999999999755322110 00011112246
Q ss_pred cEEEeccccCCCHHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
+++++||++|.|++++|+.+.+.+
T Consensus 140 ~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 140 KFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHh
Confidence 899999999999999999988753
No 246
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.77 E-value=3e-18 Score=166.14 Aligned_cols=153 Identities=14% Similarity=0.177 Sum_probs=106.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
..+|+++|.+|||||||+|++.+...+.+. .|.......+..++.++.+|||||+. ++......
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~------~t~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~~ 80 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQ------PTQHPTSEELAIGNIKFTTFDLGGHQ----------QARRLWKD 80 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccC------CccccceEEEEECCEEEEEEECCCCH----------HHHHHHHH
Confidence 468999999999999999999987654331 23333445566788999999999987 44456667
Q ss_pred HHhccceEEEEeecCCCCChhhH--HHHHHHHH-hCCCCcEEEEecCCCCCcCCccchHHHHHHHHh-----------cC
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRK-HAPQIKPIVAMNKCESLHNGTGSLAGAAAESLM-----------LG 298 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~L~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~-----------~g 298 (640)
++..+|++++|+|++++.+..+. .+.+.++. ...++|+++|+||+|+..... .++....+.. ..
T Consensus 81 ~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~l~l~~~~~~~~~~~~~ 158 (184)
T smart00178 81 YFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAAS--EDELRYALGLTNTTGSKGKVGVR 158 (184)
T ss_pred HhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCC--HHHHHHHcCCCcccccccccCCc
Confidence 89999999999999876433321 22222221 124789999999999864322 2222222110 01
Q ss_pred CCCcEEeeccCCCChhHHHHHhccc
Q 006555 299 FGDPIAISAETGLGMTELYEALRPS 323 (640)
Q Consensus 299 ~~~~i~iSA~~g~gi~eL~~~I~~~ 323 (640)
...++++||++|.|+++++++|.+.
T Consensus 159 ~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 159 PLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred eeEEEEeecccCCChHHHHHHHHhh
Confidence 2247999999999999999998753
No 247
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.77 E-value=4.5e-18 Score=163.38 Aligned_cols=144 Identities=20% Similarity=0.246 Sum_probs=98.8
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 436 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 436 (640)
..+|+++|.+|+|||||++++++.......++.|.+ ...+.+++..+.+|||||+.+.. .....++
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~l~D~~G~~~~~----------~~~~~~~ 80 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSN----VEEIVYKNIRFLMWDIGGQESLR----------SSWNTYY 80 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc----eEEEEECCeEEEEEECCCCHHHH----------HHHHHHh
Confidence 469999999999999999999876543333333332 23556778899999999964321 1234567
Q ss_pred hhccEEEEEecccHH-----------HHHH----cCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 437 MRAHVVALVLDAEEV-----------RAVE----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 437 ~~advvllVvDa~~~-----------~~~~----~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
+.+|++++|+|+++. .... .++|+++++||+|+.......+ + ...+..........+
T Consensus 81 ~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~----i----~~~l~~~~~~~~~~~ 152 (174)
T cd04153 81 TNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAE----I----SESLGLTSIRDHTWH 152 (174)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHH----H----HHHhCcccccCCceE
Confidence 899999999999875 1111 3589999999999865322111 1 111111111122457
Q ss_pred EEEeccccCCCHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVID 522 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~ 522 (640)
++++||++|.|++++|++|.+
T Consensus 153 ~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 153 IQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred EEecccCCCCCHHHHHHHHhc
Confidence 999999999999999998864
No 248
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.77 E-value=4.7e-18 Score=160.32 Aligned_cols=150 Identities=20% Similarity=0.232 Sum_probs=100.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEE-CCeeEEEEeCCCCccccCccchHHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-GDLRFKVLDSAGLETEATSGSILDRTAGMTANV 233 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 233 (640)
+|+++|.+|||||||+|++++...... .+ |.......+.. .+..+.+|||||+. ++......+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~--~~----t~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~~ 64 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT--IP----TVGFNVEMLQLEKHLSLTVWDVGGQE----------KMRTVWKCY 64 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc--cC----ccCcceEEEEeCCceEEEEEECCCCH----------hHHHHHHHH
Confidence 489999999999999999998765322 22 11122233333 34689999999987 444555677
Q ss_pred HhccceEEEEeecCCCCChhh--HHHHHHHHHh-CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCC-----CCcEEe
Q 006555 234 LAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF-----GDPIAI 305 (640)
Q Consensus 234 ~~~ad~vl~VvD~s~~~~~~~--~~~~~~L~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~-----~~~i~i 305 (640)
+..+|++++|+|++++.+..+ ..+.+.++.. ..+.|+++|+||+|+..... ..+.........+ .+++++
T Consensus 65 ~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~ 142 (160)
T cd04156 65 LENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT--AEEITRRFKLKKYCSDRDWYVQPC 142 (160)
T ss_pred hccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC--HHHHHHHcCCcccCCCCcEEEEec
Confidence 899999999999998654332 2223333321 24789999999999864321 1222111111111 147899
Q ss_pred eccCCCChhHHHHHhcc
Q 006555 306 SAETGLGMTELYEALRP 322 (640)
Q Consensus 306 SA~~g~gi~eL~~~I~~ 322 (640)
||++|+|++++++.|..
T Consensus 143 Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 143 SAVTGEGLAEAFRKLAS 159 (160)
T ss_pred ccccCCChHHHHHHHhc
Confidence 99999999999998864
No 249
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.77 E-value=2.5e-18 Score=167.32 Aligned_cols=158 Identities=26% Similarity=0.305 Sum_probs=119.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceee-----------------cCCCCCceeeeeEEEEEE--ECCeeEEEEeCCCCc
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALV-----------------YNTPDDHVTRDIREGLAK--LGDLRFKVLDSAGLE 214 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v-----------------~~~~~~~tT~~~~~~~~~--~~~~~~~liDTpG~~ 214 (640)
..|+++|..++|||||+++|++...... ....+ .|.+....... ..+..+.++||||+.
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERG--ITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCT--SSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcc--cccccccccccccccccceeeccccccc
Confidence 5899999999999999999996432110 01123 66677777777 788999999999997
Q ss_pred cccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHH-HH-H
Q 006555 215 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAG-AA-A 292 (640)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~-~~-~ 292 (640)
++...+...+..+|++++|+|+.++......+.+..++.. ++|+++|+||+|+...+.....+ .. .
T Consensus 82 ----------~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~--~~p~ivvlNK~D~~~~~~~~~~~~~~~~ 149 (188)
T PF00009_consen 82 ----------DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL--GIPIIVVLNKMDLIEKELEEIIEEIKEK 149 (188)
T ss_dssp ----------HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT--T-SEEEEEETCTSSHHHHHHHHHHHHHH
T ss_pred ----------ceeecccceecccccceeeeeccccccccccccccccccc--ccceEEeeeeccchhhhHHHHHHHHHHH
Confidence 6667778889999999999999999999888888888877 88999999999998322111111 11 1
Q ss_pred HHHhcCCC-----CcEEeeccCCCChhHHHHHhccchH
Q 006555 293 ESLMLGFG-----DPIAISAETGLGMTELYEALRPSVE 325 (640)
Q Consensus 293 ~~~~~g~~-----~~i~iSA~~g~gi~eL~~~I~~~l~ 325 (640)
.....+.. +++++||.+|.|+++|++.|.+.+|
T Consensus 150 l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 150 LLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred hccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 12233433 4899999999999999999988765
No 250
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.77 E-value=6.7e-18 Score=162.16 Aligned_cols=151 Identities=19% Similarity=0.111 Sum_probs=104.3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
..+|+++|++|||||||+++|++....... .|.........+++.++.+|||||+. ++......
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~------~t~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~ 78 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTS------PTIGSNVEEIVYKNIRFLMWDIGGQE----------SLRSSWNT 78 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcC------CccccceEEEEECCeEEEEEECCCCH----------HHHHHHHH
Confidence 468999999999999999999876543221 12222334566678899999999987 45556667
Q ss_pred HHhccceEEEEeecCCCCChhh--HHHHHHHHHh-CCCCcEEEEecCCCCCcCCccchHHHHHHHH-----hcCCCCcEE
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESL-----MLGFGDPIA 304 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~--~~~~~~L~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~-----~~g~~~~i~ 304 (640)
+++.+|++++|+|++++.+... .++.+.++.. ..+.|+++|+||+|+..... ..+...... ..++ ++++
T Consensus 79 ~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~--~~~i~~~l~~~~~~~~~~-~~~~ 155 (174)
T cd04153 79 YYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMT--PAEISESLGLTSIRDHTW-HIQG 155 (174)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCC--HHHHHHHhCcccccCCce-EEEe
Confidence 8899999999999987644432 1222333221 23689999999999865321 122111111 1122 4689
Q ss_pred eeccCCCChhHHHHHhcc
Q 006555 305 ISAETGLGMTELYEALRP 322 (640)
Q Consensus 305 iSA~~g~gi~eL~~~I~~ 322 (640)
+||++|.|++++++.|.+
T Consensus 156 ~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 156 CCALTGEGLPEGLDWIAS 173 (174)
T ss_pred cccCCCCCHHHHHHHHhc
Confidence 999999999999998864
No 251
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.77 E-value=5.5e-18 Score=163.00 Aligned_cols=145 Identities=26% Similarity=0.396 Sum_probs=98.5
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCcee--------e------cCcccceeeeEEEEEEE-----CCeEEEEEEeCCCCccc
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVL--------V------GPEAGLTRDSVRVHFEY-----QGRTVYLVDTAGWLQRE 419 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~--------~------~~~~gtT~d~~~~~~~~-----~~~~~~liDTpG~~~~~ 419 (640)
+|+++|++|||||||+++|++..... . ....|+|.+.....+.+ .+..+.||||||+.+..
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 58999999999999999999743211 1 12335666554444433 34567899999975431
Q ss_pred ccCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHH
Q 006555 420 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQE 489 (640)
Q Consensus 420 ~~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~ 489 (640)
..+..+++.+|++|+|+|+++. .....++|+++|+||+|+.+... .... .+
T Consensus 82 ----------~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~-~~~~--------~~ 142 (179)
T cd01890 82 ----------YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADP-ERVK--------QQ 142 (179)
T ss_pred ----------HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCH-HHHH--------HH
Confidence 2344678899999999999864 22346899999999999864321 1111 11
Q ss_pred HHhhCCCCCCCcEEEeccccCCCHHHHHHHHHHH
Q 006555 490 IQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 490 ~~~~~~~~~~~~~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
+.+.+. ....+++++||++|.|++++++.+.+.
T Consensus 143 ~~~~~~-~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 143 IEDVLG-LDPSEAILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred HHHHhC-CCcccEEEeeccCCCCHHHHHHHHHhh
Confidence 222221 122358999999999999999998764
No 252
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.77 E-value=4e-18 Score=162.91 Aligned_cols=146 Identities=21% Similarity=0.234 Sum_probs=100.4
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECC--eEEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|++|||||||++++++.. ......+..+.+.....+.+++ ..+.||||||..+. .......+
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~ 72 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGR-FPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERF---------RKSMVQHY 72 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHH---------HHhhHHHh
Confidence 689999999999999999998754 2222333444455555566666 46789999996432 11123356
Q ss_pred HhhccEEEEEecccHH-------H---HH-----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 436 LMRAHVVALVLDAEEV-------R---AV-----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 436 i~~advvllVvDa~~~-------~---~~-----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
++.+|++++|+|++++ . .+ ..++|+|+|+||+|+....... .+..+.++....+
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-----------~~~~~~~~~~~~~ 141 (170)
T cd04115 73 YRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVP-----------TDLAQRFADAHSM 141 (170)
T ss_pred hcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCC-----------HHHHHHHHHHcCC
Confidence 7789999999999876 1 11 1368999999999987543211 1111111122347
Q ss_pred cEEEecccc---CCCHHHHHHHHHHHH
Q 006555 501 PVVFTSALE---GRGRIAVMHQVIDTY 524 (640)
Q Consensus 501 ~~v~iSAk~---g~gv~~l~~~i~~~~ 524 (640)
+++++||++ +.|++++|..+.+.+
T Consensus 142 ~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 142 PLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred cEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 899999999 899999999987654
No 253
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.77 E-value=2.3e-18 Score=162.80 Aligned_cols=143 Identities=20% Similarity=0.199 Sum_probs=96.3
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCcee-ecCcccceeeeEEEEEEECC--eEEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVL-VGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~-~~~~~gtT~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
+||+++|++|||||||+|++++.+... ..+..|.+... ..+.+++ ..+.+|||||..+. . .....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~v~~~~~~~~~~i~D~~G~~~~---------~-~~~~~ 69 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLT--QTVNLDDTTVKFEIWDTAGQERY---------R-SLAPM 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEE--EEEEECCEEEEEEEEeCCchHHH---------H-HHHHH
Confidence 699999999999999999999876433 23333433332 3334444 56789999995332 1 12235
Q ss_pred HHhhccEEEEEecccHH-------H----HHH---cCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 435 NLMRAHVVALVLDAEEV-------R----AVE---EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 435 ~i~~advvllVvDa~~~-------~----~~~---~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
+++.+|++++|+|+++. . ... .+.|+++++||+|+........ +...+ .. ...+.
T Consensus 70 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~--~~~~~-----~~----~~~~~ 138 (163)
T cd01860 70 YYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVST--EEAQE-----YA----DENGL 138 (163)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCH--HHHHH-----HH----HHcCC
Confidence 67789999999999865 1 011 3578999999999874322110 11110 11 11236
Q ss_pred cEEEeccccCCCHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
+++++||++|.|+.++|+++.+.
T Consensus 139 ~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd01860 139 LFFETSAKTGENVNELFTEIAKK 161 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 89999999999999999998875
No 254
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=5.2e-18 Score=150.92 Aligned_cols=160 Identities=19% Similarity=0.268 Sum_probs=129.6
Q ss_pred ccCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHH
Q 006555 150 INLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTA 227 (640)
Q Consensus 150 ~~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~ 227 (640)
.+.+++++++|..|.|||+|+.+++..+.. +....++..+.....+.+++ .+++||||+|++ ++.
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfk---DdssHTiGveFgSrIinVGgK~vKLQIWDTAGQE----------rFR 72 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFK---DDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQE----------RFR 72 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhhc---ccccceeeeeecceeeeecCcEEEEEEeecccHH----------HHH
Confidence 456789999999999999999999987652 22222356677777777766 579999999999 888
Q ss_pred HHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHh----CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcE
Q 006555 228 GMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPI 303 (640)
Q Consensus 228 ~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~----~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i 303 (640)
..+..|++.|...++|+|++...+++ ++..||... .+++-+++++||.|+..++++...++...+.+..+ ...
T Consensus 73 SVtRsYYRGAAGAlLVYD~Tsrdsfn--aLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel-~fl 149 (214)
T KOG0086|consen 73 SVTRSYYRGAAGALLVYDITSRDSFN--ALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENEL-MFL 149 (214)
T ss_pred HHHHHHhccccceEEEEeccchhhHH--HHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccce-eee
Confidence 99999999999999999999888777 566777653 35777899999999999888877777666666555 678
Q ss_pred EeeccCCCChhHHHHHhccchH
Q 006555 304 AISAETGLGMTELYEALRPSVE 325 (640)
Q Consensus 304 ~iSA~~g~gi~eL~~~I~~~l~ 325 (640)
++||.+|+|++|.|-.....+-
T Consensus 150 ETSa~TGeNVEEaFl~c~~tIl 171 (214)
T KOG0086|consen 150 ETSALTGENVEEAFLKCARTIL 171 (214)
T ss_pred eecccccccHHHHHHHHHHHHH
Confidence 9999999999999877665543
No 255
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.77 E-value=6.1e-18 Score=161.39 Aligned_cols=145 Identities=19% Similarity=0.193 Sum_probs=98.5
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
.+||+++|.+|||||||++++++.. ......+..+.+.....+.+++. .+.||||||+.+. .. ....
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------~~-~~~~ 73 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNK-FDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERF---------RS-LRTP 73 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC-CCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHH---------HH-hHHH
Confidence 4899999999999999999999654 33333444444544455566665 5679999996432 11 2335
Q ss_pred HHhhccEEEEEecccHH-----------HHH-------HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCC
Q 006555 435 NLMRAHVVALVLDAEEV-----------RAV-------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ 496 (640)
Q Consensus 435 ~i~~advvllVvDa~~~-----------~~~-------~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~ 496 (640)
+++.+|++++|+|.++. ... ..+.|+++|+||+|+.+.....+..+. ..+ .
T Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~--------~~~---~ 142 (170)
T cd04116 74 FYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQA--------WCR---E 142 (170)
T ss_pred HhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHH--------HHH---H
Confidence 67889999999998865 011 135799999999998643211111111 111 1
Q ss_pred CCCCcEEEeccccCCCHHHHHHHHHHH
Q 006555 497 VTGIPVVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 497 ~~~~~~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
....+++++||++|.|+.++|+.+++.
T Consensus 143 ~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 143 NGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 123479999999999999999998763
No 256
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.77 E-value=6.1e-18 Score=168.87 Aligned_cols=156 Identities=19% Similarity=0.187 Sum_probs=108.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCce-eecCCCCCceeeeeEEEEEEEC--CeeEEEEeCCCCccccCccchHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREA-LVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMT 230 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~-~v~~~~~~~tT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 230 (640)
.+|+++|.+|||||||++++++.... .....+ ...+.....+.+. ...+.+|||||++ .+ ..
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t---~~~~~~~~~i~~~~~~~~l~i~Dt~G~~----------~~--~~ 65 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDAS---GDDDTYERTVSVDGEESTLVVIDHWEQE----------MW--TE 65 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCC---ccccceEEEEEECCEEEEEEEEeCCCcc----------hH--HH
Confidence 37999999999999999999876543 211111 1123444445553 3679999999997 11 11
Q ss_pred HHHHh-ccceEEEEeecCCCCChhh-HHHHHHHHHh--CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEee
Q 006555 231 ANVLA-KTQFAIFMIDVRSGLHPLD-LEVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 306 (640)
Q Consensus 231 ~~~~~-~ad~vl~VvD~s~~~~~~~-~~~~~~L~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iS 306 (640)
..++. .+|++++|+|++++.+.+. .++...+... ..+.|+|+|+||+|+.....+..++........+. .++++|
T Consensus 66 ~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~S 144 (221)
T cd04148 66 DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDC-KFIETS 144 (221)
T ss_pred hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCC-eEEEec
Confidence 22345 8999999999998766653 2344444443 24789999999999976655444444444445565 689999
Q ss_pred ccCCCChhHHHHHhccchH
Q 006555 307 AETGLGMTELYEALRPSVE 325 (640)
Q Consensus 307 A~~g~gi~eL~~~I~~~l~ 325 (640)
|++|.|++++++.+.+.+.
T Consensus 145 A~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 145 AGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987664
No 257
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.77 E-value=8.3e-18 Score=160.65 Aligned_cols=145 Identities=17% Similarity=0.177 Sum_probs=96.5
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHHhh
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 438 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 438 (640)
||+++|.+|||||||+++|.+... ....+ |.......+++++..+.+|||||+.+.. ..+..+++.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~~~~--T~~~~~~~~~~~~~~i~l~Dt~G~~~~~----------~~~~~~~~~ 66 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQPIP--TIGFNVETVEYKNLKFTIWDVGGKHKLR----------PLWKHYYLN 66 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CCcCC--cCceeEEEEEECCEEEEEEECCCChhcc----------hHHHHHhcc
Confidence 689999999999999999997642 22222 2322223566788899999999975431 123456788
Q ss_pred ccEEEEEecccHH-----------HHH----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEE
Q 006555 439 AHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVV 503 (640)
Q Consensus 439 advvllVvDa~~~-----------~~~----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v 503 (640)
+|++++|+|+++. ... ..+.|++||+||+|+.......+ +.+.+. ... +.......++
T Consensus 67 ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~----~~~~~~--~~~-~~~~~~~~~~ 139 (169)
T cd04158 67 TQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEE----MTELLS--LHK-LCCGRSWYIQ 139 (169)
T ss_pred CCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHH----HHHHhC--Ccc-ccCCCcEEEE
Confidence 9999999999875 111 13479999999999964322111 110000 000 0001123688
Q ss_pred EeccccCCCHHHHHHHHHHHH
Q 006555 504 FTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 504 ~iSAk~g~gv~~l~~~i~~~~ 524 (640)
++||++|.|++++|+++.+.+
T Consensus 140 ~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 140 GCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred eCcCCCCCCHHHHHHHHHHHH
Confidence 999999999999999997654
No 258
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.77 E-value=4.2e-18 Score=168.69 Aligned_cols=195 Identities=22% Similarity=0.278 Sum_probs=135.4
Q ss_pred cccCCceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCc-hhh-HHH
Q 006555 353 ESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGP-ASL-SVM 430 (640)
Q Consensus 353 ~~~~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~-~~~-~~~ 430 (640)
+..+.+.|+++|.||||||||.|.++|...+.++....||+..+.+.++-+..++.++||||+...+..... ... ...
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 345678999999999999999999999999999999999999999999999999999999999766322211 111 122
Q ss_pred HHHHHHhhccEEEEEecccHH------H---H--HHcCCcEEEEEeCCCCCCCccc-hHHHHHHHH----HcHHHHHhhC
Q 006555 431 QSRKNLMRAHVVALVLDAEEV------R---A--VEEGRGLVVIVNKMDLLSGRQN-SALYKRVKE----AVPQEIQTVI 494 (640)
Q Consensus 431 ~~~~~i~~advvllVvDa~~~------~---~--~~~~~p~Ilv~NK~Dl~~~~~~-~~~~~~~~~----~v~~~~~~~~ 494 (640)
..+.++..||++++|+|+++. . . .-..+|-|+|.||+|....... ....+.+.+ ....+.++.+
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f 227 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKF 227 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHh
Confidence 456788899999999999954 1 1 1257899999999998765321 111111111 1112233333
Q ss_pred CCCC-------------CCcEEEeccccCCCHHHHHHHHHHHHHH----HhcCCChHHH-----HHHHHHHHhcC
Q 006555 495 PQVT-------------GIPVVFTSALEGRGRIAVMHQVIDTYQK----WCLRLPTSRL-----NRWLRKVMGRH 547 (640)
Q Consensus 495 ~~~~-------------~~~~v~iSAk~g~gv~~l~~~i~~~~~~----~~~~i~t~~l-----~~~l~~~~~~~ 547 (640)
.... +-.+|++||++|+||+++-+++...... +...+.|+.- -+.+++.+..+
T Consensus 228 ~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~e~VReklLd~ 302 (379)
T KOG1423|consen 228 TDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCSESVREKLLDH 302 (379)
T ss_pred ccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHHHHHHHHHHhh
Confidence 2221 3358999999999999999999887653 2233444332 24455555544
No 259
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.77 E-value=8.3e-18 Score=158.92 Aligned_cols=145 Identities=17% Similarity=0.193 Sum_probs=101.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 234 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 234 (640)
+|+++|++|||||||+|+|.+.... . . .|... .+.+. .+|||||+....+ ++.......+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~--~~~~v-----~~~~~--~~iDtpG~~~~~~------~~~~~~~~~~ 62 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A---R--KTQAV-----EFNDK--GDIDTPGEYFSHP------RWYHALITTL 62 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C---c--cceEE-----EECCC--CcccCCccccCCH------HHHHHHHHHH
Confidence 7999999999999999999875421 1 1 22222 22222 2699999863321 2333445568
Q ss_pred hccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCC-CCcEEeeccCCCCh
Q 006555 235 AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF-GDPIAISAETGLGM 313 (640)
Q Consensus 235 ~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~-~~~i~iSA~~g~gi 313 (640)
..||++++|+|++++.+.... ++.....++|+++++||+|+.... .+.....+..+++ .+++++||++|.|+
T Consensus 63 ~~ad~il~v~d~~~~~s~~~~----~~~~~~~~~~ii~v~nK~Dl~~~~---~~~~~~~~~~~~~~~p~~~~Sa~~g~gi 135 (158)
T PRK15467 63 QDVDMLIYVHGANDPESRLPA----GLLDIGVSKRQIAVISKTDMPDAD---VAATRKLLLETGFEEPIFELNSHDPQSV 135 (158)
T ss_pred hcCCEEEEEEeCCCcccccCH----HHHhccCCCCeEEEEEccccCccc---HHHHHHHHHHcCCCCCEEEEECCCccCH
Confidence 899999999999987655433 333333468999999999986532 2334445556665 37899999999999
Q ss_pred hHHHHHhccchHH
Q 006555 314 TELYEALRPSVED 326 (640)
Q Consensus 314 ~eL~~~I~~~l~~ 326 (640)
++|++.+.+.+.+
T Consensus 136 ~~l~~~l~~~~~~ 148 (158)
T PRK15467 136 QQLVDYLASLTKQ 148 (158)
T ss_pred HHHHHHHHHhchh
Confidence 9999999887654
No 260
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.77 E-value=9e-18 Score=164.80 Aligned_cols=156 Identities=15% Similarity=0.185 Sum_probs=107.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
+|+++|.+|||||||++++++.... ..... ++.+.....+.+.+ ..+.+|||||.. ++..+...
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~ 66 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRR--TVEEMHRKEYEVGGVSLTLDILDTSGSY----------SFPAMRKL 66 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCC--chhhheeEEEEECCEEEEEEEEECCCch----------hhhHHHHH
Confidence 5899999999999999999987643 22222 44445555566666 578999999987 33344556
Q ss_pred HHhccceEEEEeecCCCCChhhH-HHHHHHHHh--CCCCcEEEEecCCCCCcC-CccchHHHHHHHH-hcCCCCcEEeec
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHN-GTGSLAGAAAESL-MLGFGDPIAISA 307 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~--~~~~p~ilV~NK~Dl~~~-~~~~~~~~~~~~~-~~g~~~~i~iSA 307 (640)
++..+|++++|+|++++.+.++. .+...+... ..++|+++|+||+|+... ............. ..+. .++++||
T Consensus 67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~-~~~~~Sa 145 (198)
T cd04147 67 SIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNC-GFVETSA 145 (198)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCC-cEEEecC
Confidence 78999999999999886655542 222333332 237899999999998753 2222222222222 2222 6789999
Q ss_pred cCCCChhHHHHHhccchH
Q 006555 308 ETGLGMTELYEALRPSVE 325 (640)
Q Consensus 308 ~~g~gi~eL~~~I~~~l~ 325 (640)
++|.|++++++.+.+.+.
T Consensus 146 ~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 146 KDNENVLEVFKELLRQAN 163 (198)
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999987653
No 261
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.77 E-value=4.9e-18 Score=162.74 Aligned_cols=156 Identities=15% Similarity=0.143 Sum_probs=106.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|.+|||||||++++.+...... ... +..+.....+.+++ ..+.+|||||+. ++.....
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEV--YVP--TVFENYVADIEVDGKQVELALWDTAGQE----------DYDRLRP 67 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCC--CCC--ccccceEEEEEECCEEEEEEEEeCCCch----------hhhhccc
Confidence 5899999999999999999998754321 211 33333334455555 468999999987 2323333
Q ss_pred HHHhccceEEEEeecCCCCChhhHH--HHHHHHHhCCCCcEEEEecCCCCCcCCc------------cchHHHHHHHHhc
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDLE--VGKWLRKHAPQIKPIVAMNKCESLHNGT------------GSLAGAAAESLML 297 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~~--~~~~L~~~~~~~p~ilV~NK~Dl~~~~~------------~~~~~~~~~~~~~ 297 (640)
.++..+|++++|+|+++..+.++.. +...++....+.|+++|+||+|+..... .............
T Consensus 68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~ 147 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKI 147 (175)
T ss_pred cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHc
Confidence 4678999999999999765554421 3333444445889999999999865321 1112223334445
Q ss_pred CCCCcEEeeccCCCChhHHHHHhccc
Q 006555 298 GFGDPIAISAETGLGMTELYEALRPS 323 (640)
Q Consensus 298 g~~~~i~iSA~~g~gi~eL~~~I~~~ 323 (640)
+...++++||++|.|++++++.|...
T Consensus 148 ~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 148 GAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred CCcEEEEeccccCcCHHHHHHHHHHH
Confidence 55578999999999999999988743
No 262
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.77 E-value=6.4e-18 Score=164.93 Aligned_cols=151 Identities=20% Similarity=0.220 Sum_probs=99.8
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceee-eEEEEEEECCeE--EEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRD-SVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d-~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
+||+++|.+|||||||+++|++.. +...++.++... .....+..++.. +.+|||||..+.. .....
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~----------~~~~~ 69 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHR-FLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYE----------AMSRI 69 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-cCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhh----------hhhHh
Confidence 489999999999999999999764 333334444333 333456667664 5599999964331 11224
Q ss_pred HHhhccEEEEEecccHHH-------H------HHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 435 NLMRAHVVALVLDAEEVR-------A------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 435 ~i~~advvllVvDa~~~~-------~------~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
+++.+|++++|+|+++.. . ...+.|+++|+||+|+....... +.+..+....+....+.+
T Consensus 70 ~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~-------~~v~~~~~~~~~~~~~~~ 142 (193)
T cd04118 70 YYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSL-------RQVDFHDVQDFADEIKAQ 142 (193)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccccccccc-------CccCHHHHHHHHHHcCCe
Confidence 567899999999998751 1 12368999999999986532100 000000011111122468
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
++++||++|.|++++|+.+.+.+.+
T Consensus 143 ~~~~Sa~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 143 HFETSSKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999999887643
No 263
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.77 E-value=3.2e-18 Score=162.78 Aligned_cols=152 Identities=16% Similarity=0.120 Sum_probs=101.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 234 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 234 (640)
.|+++|.+|||||||++++++..... ...|. +. .....+..++.++.+|||||.. ++..+...++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~-~~~pt--~g--~~~~~i~~~~~~l~i~Dt~G~~----------~~~~~~~~~~ 65 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLE-SVVPT--TG--FNSVAIPTQDAIMELLEIGGSQ----------NLRKYWKRYL 65 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcc-ccccc--CC--cceEEEeeCCeEEEEEECCCCc----------chhHHHHHHH
Confidence 38999999999999999999865321 11111 12 2223456677899999999987 4445667789
Q ss_pred hccceEEEEeecCCCCChhh-HHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHH----HHHHHHhcCCCCcEEeeccC
Q 006555 235 AKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAG----AAAESLMLGFGDPIAISAET 309 (640)
Q Consensus 235 ~~ad~vl~VvD~s~~~~~~~-~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~----~~~~~~~~g~~~~i~iSA~~ 309 (640)
+.+|++++|+|.+++.+... ..++..+....+++|+++|+||+|+.......... ........++ .++++||++
T Consensus 66 ~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~Sa~~ 144 (164)
T cd04162 66 SGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRW-ILQGTSLDD 144 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCce-EEEEeeecC
Confidence 99999999999988654432 11222222223589999999999987654322100 1111122233 467888887
Q ss_pred ------CCChhHHHHHhcc
Q 006555 310 ------GLGMTELYEALRP 322 (640)
Q Consensus 310 ------g~gi~eL~~~I~~ 322 (640)
++||+++++.+..
T Consensus 145 ~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 145 DGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred CCChhHHHHHHHHHHHHhc
Confidence 9999999998753
No 264
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.77 E-value=2.8e-18 Score=162.96 Aligned_cols=144 Identities=25% Similarity=0.318 Sum_probs=97.6
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHHH
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKNL 436 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 436 (640)
||+++|.+|||||||+++++... ....+++++.+.....+.+++. .+.+|||||..+.. ......++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~ 69 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQAD---------TEQLERSI 69 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cccccCCChHHhceEEEEECCEEEEEEEEECCCCcccc---------cchHHHHH
Confidence 58999999999999999998643 2344455543333444556665 57799999975321 01233567
Q ss_pred hhccEEEEEecccHH-------------HHH---HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 437 MRAHVVALVLDAEEV-------------RAV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 437 ~~advvllVvDa~~~-------------~~~---~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
+.+|++|+|+|+++. ... ..+.|+++|+||+|+....... .+....++...+.
T Consensus 70 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~-----------~~~~~~~~~~~~~ 138 (165)
T cd04146 70 RWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVS-----------TEEGEKLASELGC 138 (165)
T ss_pred HhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccC-----------HHHHHHHHHHcCC
Confidence 789999999999875 011 2378999999999986432111 1111111112246
Q ss_pred cEEEeccccC-CCHHHHHHHHHHHH
Q 006555 501 PVVFTSALEG-RGRIAVMHQVIDTY 524 (640)
Q Consensus 501 ~~v~iSAk~g-~gv~~l~~~i~~~~ 524 (640)
+++++||++| .|++++|+.+.+.+
T Consensus 139 ~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 139 LFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred EEEEeCCCCCchhHHHHHHHHHHHH
Confidence 8999999999 59999999998754
No 265
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.76 E-value=7.2e-18 Score=158.77 Aligned_cols=142 Identities=19% Similarity=0.213 Sum_probs=99.9
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHHhh
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 438 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 438 (640)
||+++|.+|||||||++++++.......++.+.+. ..+.+++..+.+|||||..... .....++..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~D~~G~~~~~----------~~~~~~~~~ 66 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNV----ETVEYKNVSFTVWDVGGQDKIR----------PLWKHYYEN 66 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcce----EEEEECCEEEEEEECCCChhhH----------HHHHHHhcc
Confidence 68999999999999999999876333333334333 3455678899999999965331 123456778
Q ss_pred ccEEEEEecccHH-----------HHH----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEE
Q 006555 439 AHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVV 503 (640)
Q Consensus 439 advvllVvDa~~~-----------~~~----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v 503 (640)
+|++++|+|+++. ... ..+.|+++|+||+|+....... ++...+..........+++
T Consensus 67 ~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 138 (158)
T cd00878 67 TNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVS--------ELIEKLGLEKILGRRWHIQ 138 (158)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHH--------HHHHhhChhhccCCcEEEE
Confidence 9999999999875 111 2478999999999997653221 1112222211223456899
Q ss_pred EeccccCCCHHHHHHHHHH
Q 006555 504 FTSALEGRGRIAVMHQVID 522 (640)
Q Consensus 504 ~iSAk~g~gv~~l~~~i~~ 522 (640)
++||++|.|++++|++|..
T Consensus 139 ~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 139 PCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred EeeCCCCCCHHHHHHHHhh
Confidence 9999999999999998864
No 266
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.76 E-value=1.2e-17 Score=157.79 Aligned_cols=148 Identities=14% Similarity=0.070 Sum_probs=104.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
+|+++|.+|||||||+++++...... ..+ ++.......+.+++ ..+.+|||+|+.. ..
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~--~~~---~~~~~~~~~i~~~~~~~~l~i~D~~g~~~---------------~~ 61 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQ--LES---PEGGRFKKEVLVDGQSHLLLIRDEGGAPD---------------AQ 61 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCC--CCC---CCccceEEEEEECCEEEEEEEEECCCCCc---------------hh
Confidence 79999999999999999988764322 111 12223345566666 5689999999962 12
Q ss_pred HHhccceEEEEeecCCCCChhh-HHHHHHHHHhC--CCCcEEEEecCCCCCc--CCccchHHHHHHHHhcCCCCcEEeec
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHA--PQIKPIVAMNKCESLH--NGTGSLAGAAAESLMLGFGDPIAISA 307 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~-~~~~~~L~~~~--~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~~~~g~~~~i~iSA 307 (640)
+++.+|++++|+|+++..+.++ ..+.+.+.... ++.|+++|+||+|+.. ...+...+........+...++++||
T Consensus 62 ~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 141 (158)
T cd04103 62 FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCA 141 (158)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEec
Confidence 4578999999999999888876 33444444432 4689999999999853 23333333333333443237899999
Q ss_pred cCCCChhHHHHHhcc
Q 006555 308 ETGLGMTELYEALRP 322 (640)
Q Consensus 308 ~~g~gi~eL~~~I~~ 322 (640)
++|.||+++++.+.+
T Consensus 142 k~~~~i~~~f~~~~~ 156 (158)
T cd04103 142 TYGLNVERVFQEAAQ 156 (158)
T ss_pred CCCCCHHHHHHHHHh
Confidence 999999999998864
No 267
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.76 E-value=3.8e-18 Score=170.08 Aligned_cols=146 Identities=18% Similarity=0.160 Sum_probs=100.2
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCc-eeecCcccceeeeEEEEEEEC--CeEEEEEEeCCCCcccccCCchhhHHHHH
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDR-VLVGPEAGLTRDSVRVHFEYQ--GRTVYLVDTAGWLQREKEKGPASLSVMQS 432 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~-~~~~~~~gtT~d~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 432 (640)
..+||+++|.+|||||||+++++.... ....++.|++.. ...+..+ ...+.+|||||+.++. ...
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~--~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~ 79 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH--PLDFFTNCGKIRFYCWDTAGQEKFG----------GLR 79 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEE--EEEEEECCeEEEEEEEECCCchhhh----------hhh
Confidence 458999999999999999999876542 123334444333 3334343 3578899999975432 112
Q ss_pred HHHHhhccEEEEEecccHH-------H------HHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCC
Q 006555 433 RKNLMRAHVVALVLDAEEV-------R------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 499 (640)
Q Consensus 433 ~~~i~~advvllVvDa~~~-------~------~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 499 (640)
..+++.+|++|+|+|.++. . ....+.|++||+||+|+.......+ .+ .+ ....+
T Consensus 80 ~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~-------~~--~~----~~~~~ 146 (219)
T PLN03071 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-------QV--TF----HRKKN 146 (219)
T ss_pred HHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHH-------HH--HH----HHhcC
Confidence 3467789999999999976 1 1125789999999999964321111 01 11 11235
Q ss_pred CcEEEeccccCCCHHHHHHHHHHHHHH
Q 006555 500 IPVVFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 500 ~~~v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
++++++||++|.|++++|.++.+.+.+
T Consensus 147 ~~~~e~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 147 LQYYEISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 689999999999999999999877643
No 268
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.76 E-value=8.6e-18 Score=160.85 Aligned_cols=148 Identities=23% Similarity=0.219 Sum_probs=99.3
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHHH
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKNL 436 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 436 (640)
||+++|.+|||||||++++++.. +.....+.+..+.....+.++|. .+.||||||+.+. .. ....++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~~-~~~~~~ 70 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV-FDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERF---------KC-IASTYY 70 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHH---------Hh-hHHHHh
Confidence 79999999999999999999764 22222333444555455666664 6789999996433 11 224567
Q ss_pred hhccEEEEEecccHH-----------HHHHc----CCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 437 MRAHVVALVLDAEEV-----------RAVEE----GRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 437 ~~advvllVvDa~~~-----------~~~~~----~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
+++|++++|+|+++. ..... ..|+++|+||+|+.+....... + +....+....+.+
T Consensus 71 ~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~-~--------~~~~~~~~~~~~~ 141 (170)
T cd04108 71 RGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALM-E--------QDAIKLAAEMQAE 141 (170)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccccccc-H--------HHHHHHHHHcCCe
Confidence 899999999999874 11111 2568999999998654221100 0 0001111112468
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
++++||++|.|++++|+.+.+.+.+
T Consensus 142 ~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 142 YWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999999887643
No 269
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.76 E-value=1.1e-17 Score=162.05 Aligned_cols=150 Identities=14% Similarity=0.166 Sum_probs=98.9
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|||||||++++++... .....+.+..+.....+..++. .+.||||+|..+. .. ....+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f-~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~---------~~-~~~~~ 69 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEF-DEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREF---------IN-MLPLV 69 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhH---------HH-hhHHH
Confidence 5899999999999999999987642 2223333344555556667774 5789999996433 11 22346
Q ss_pred HhhccEEEEEecccHH-----------HHH---HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 436 LMRAHVVALVLDAEEV-----------RAV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 436 i~~advvllVvDa~~~-----------~~~---~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
+++||++++|+|+++. ... ....| |+|+||+|+.......+. +.+. +..+.++...+.+
T Consensus 70 ~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~-----~~~~-~~~~~~a~~~~~~ 142 (182)
T cd04128 70 CNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQ-----EEIT-KQARKYAKAMKAP 142 (182)
T ss_pred CcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhh-----hhhH-HHHHHHHHHcCCE
Confidence 7899999999999876 111 12345 789999999642110000 0011 1111122223578
Q ss_pred EEEeccccCCCHHHHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVIDTYQ 525 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~~~~ 525 (640)
++++||++|.|++++|+.+.+.+.
T Consensus 143 ~~e~SAk~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 143 LIFCSTSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999987654
No 270
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.76 E-value=9.8e-18 Score=163.94 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=107.2
Q ss_pred CEEEEEeCCCCCHHHHHH-HHHcCCce---eecCCCCCceee--eeEEEE--------EEEC--CeeEEEEeCCCCcccc
Q 006555 154 PTVMIIGRPNVGKSALFN-RLIRRREA---LVYNTPDDHVTR--DIREGL--------AKLG--DLRFKVLDSAGLETEA 217 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin-~L~~~~~~---~v~~~~~~~tT~--~~~~~~--------~~~~--~~~~~liDTpG~~~~~ 217 (640)
.+|+++|.+|||||||++ ++.+.... ....... |.. +..... ..++ ...+.+|||+|+..
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~p--Ti~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~-- 78 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVP--TVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD-- 78 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCC--ceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--
Confidence 489999999999999996 56554221 1111111 211 211111 1223 36799999999972
Q ss_pred CccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhH--HHHHHHHHhCCCCcEEEEecCCCCCc--------------
Q 006555 218 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLH-------------- 281 (640)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~L~~~~~~~p~ilV~NK~Dl~~-------------- 281 (640)
.....+++.||++++|+|++++.+.++. .+.+.++...++.|+++|+||+|+..
T Consensus 79 ----------~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~ 148 (195)
T cd01873 79 ----------KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLA 148 (195)
T ss_pred ----------hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccc
Confidence 1123478999999999999988877754 24455555556789999999999864
Q ss_pred -----CCccchHHHHHHHHhcCCCCcEEeeccCCCChhHHHHHhcc
Q 006555 282 -----NGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRP 322 (640)
Q Consensus 282 -----~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~gi~eL~~~I~~ 322 (640)
...+..++....+..+|. .++++||++|.||+++|+.+.+
T Consensus 149 ~~~~~~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 149 RPIKNADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred cccccCCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHH
Confidence 234455666677778887 7899999999999999998764
No 271
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.76 E-value=8.6e-18 Score=158.25 Aligned_cols=150 Identities=17% Similarity=0.144 Sum_probs=103.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 234 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 234 (640)
+|+++|.+|||||||++++++....... .|.......+.+.+..+.+|||||+. ++......++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~------~t~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~ 64 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTI------PTIGFNVETVEYKNVSFTVWDVGGQD----------KIRPLWKHYY 64 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCC------CCcCcceEEEEECCEEEEEEECCCCh----------hhHHHHHHHh
Confidence 5899999999999999999988632221 22233334556678899999999987 3344556778
Q ss_pred hccceEEEEeecCCCCChhhH-HHH-HHHHHh-CCCCcEEEEecCCCCCcCCccchHHHHHHHHhc----CCCCcEEeec
Q 006555 235 AKTQFAIFMIDVRSGLHPLDL-EVG-KWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLML----GFGDPIAISA 307 (640)
Q Consensus 235 ~~ad~vl~VvD~s~~~~~~~~-~~~-~~L~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~----g~~~~i~iSA 307 (640)
..+|++++|+|++++.+.... ... ..++.. ..+.|+++|+||+|+..... ..+........ ...+++++||
T Consensus 65 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa 142 (158)
T cd00878 65 ENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALS--VSELIEKLGLEKILGRRWHIQPCSA 142 (158)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccC--HHHHHHhhChhhccCCcEEEEEeeC
Confidence 999999999999976444431 111 222211 24789999999999876432 12222222111 1125799999
Q ss_pred cCCCChhHHHHHhcc
Q 006555 308 ETGLGMTELYEALRP 322 (640)
Q Consensus 308 ~~g~gi~eL~~~I~~ 322 (640)
++|.|++++++.|..
T Consensus 143 ~~~~gv~~~~~~l~~ 157 (158)
T cd00878 143 VTGDGLDEGLDWLLQ 157 (158)
T ss_pred CCCCCHHHHHHHHhh
Confidence 999999999998764
No 272
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.76 E-value=2.7e-18 Score=164.56 Aligned_cols=153 Identities=19% Similarity=0.196 Sum_probs=102.2
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|+|||||++++++.. ....+.+|+.+.....+..++. .+.+|||||+.+... . ...+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~-~~~~ 68 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG--YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDK---------L-RPLC 68 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcc---------c-cccc
Confidence 589999999999999999998653 3445666666766666666664 667899999754421 1 1235
Q ss_pred HhhccEEEEEecccHH----H----HH------HcCCcEEEEEeCCCCCCCccchH-HHHHHHHHcHHHHHhhCCCCCCC
Q 006555 436 LMRAHVVALVLDAEEV----R----AV------EEGRGLVVIVNKMDLLSGRQNSA-LYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 436 i~~advvllVvDa~~~----~----~~------~~~~p~Ilv~NK~Dl~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
++++|++|+|+|+++. . .. ..++|+++|+||+|+........ ..+.-.+.+..+....++...+.
T Consensus 69 ~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 148 (173)
T cd04130 69 YPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGA 148 (173)
T ss_pred cCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCC
Confidence 6789999999999875 0 11 13689999999999965421000 00000011222222233333344
Q ss_pred -cEEEeccccCCCHHHHHHHHHH
Q 006555 501 -PVVFTSALEGRGRIAVMHQVID 522 (640)
Q Consensus 501 -~~v~iSAk~g~gv~~l~~~i~~ 522 (640)
+++++||++|.|++++|+.++-
T Consensus 149 ~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 149 CEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHh
Confidence 8999999999999999988753
No 273
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.76 E-value=9.6e-18 Score=166.83 Aligned_cols=156 Identities=8% Similarity=0.100 Sum_probs=112.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+|||.+|||||||++++++..... .... |..+.+...+.+++ ..+.||||+|.+ ++.....
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~--~y~p--Ti~~~~~~~~~~~~~~v~L~iwDt~G~e----------~~~~l~~ 67 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPG--SYVP--TVFENYTASFEIDKRRIELNMWDTSGSS----------YYDNVRP 67 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--ccCC--ccccceEEEEEECCEEEEEEEEeCCCcH----------HHHHHhH
Confidence 489999999999999999999865422 1211 22233333445554 568899999997 4555666
Q ss_pred HHHhccceEEEEeecCCCCChhhH--HHHHHHHHhCCCCcEEEEecCCCCCcCC------------ccchHHHHHHHHhc
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNG------------TGSLAGAAAESLML 297 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~L~~~~~~~p~ilV~NK~Dl~~~~------------~~~~~~~~~~~~~~ 297 (640)
.++..+|++|+|+|++++.+.+.. .+...++...++.|+|||+||+|+..+. .+..++....+...
T Consensus 68 ~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~ 147 (222)
T cd04173 68 LAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQV 147 (222)
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHc
Confidence 789999999999999988766643 2333344445689999999999996531 12334455556667
Q ss_pred CCCCcEEeeccCCCC-hhHHHHHhccc
Q 006555 298 GFGDPIAISAETGLG-MTELYEALRPS 323 (640)
Q Consensus 298 g~~~~i~iSA~~g~g-i~eL~~~I~~~ 323 (640)
|...++++||+++.| |+++|+.+...
T Consensus 148 ~~~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 148 GAVSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred CCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 755789999999985 99999987764
No 274
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.76 E-value=5.5e-18 Score=166.97 Aligned_cols=148 Identities=26% Similarity=0.344 Sum_probs=105.7
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe-EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR-TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
.++|+++|++|||||||+|++++.. ..+.+.+++|.+.....+.+++. .+.+|||||+.+.......+.+ ......
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~--~~~~~~ 117 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAF--RSTLEE 117 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcch-hccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHH--HHHHHH
Confidence 4799999999999999999999864 45556677788777777777665 8999999998543211111111 223345
Q ss_pred HhhccEEEEEecccHH----------HHH----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 436 LMRAHVVALVLDAEEV----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 436 i~~advvllVvDa~~~----------~~~----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
+..+|++++|+|++++ ..+ ..++|+++|+||+|+....... . . ......+
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~------------~---~-~~~~~~~ 181 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE------------E---R-LEAGRPD 181 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH------------H---H-hhcCCCc
Confidence 6689999999999864 111 1368999999999997642110 0 0 1123568
Q ss_pred EEEeccccCCCHHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
++++||++|.|++++++.|...
T Consensus 182 ~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 182 AVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred eEEEEcCCCCCHHHHHHHHHhh
Confidence 9999999999999999988653
No 275
>PRK04213 GTP-binding protein; Provisional
Probab=99.76 E-value=1e-17 Score=164.58 Aligned_cols=158 Identities=24% Similarity=0.263 Sum_probs=101.5
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccc-c-CCchhhHHH---
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK-E-KGPASLSVM--- 430 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~-~-~~~~~~~~~--- 430 (640)
..++|+++|.+|||||||+|+|++.. ..++..+|+|++.... .++ .+.+|||||+..... . ...+.+...
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 35799999999999999999999875 5677888999876543 333 689999999643211 0 012222111
Q ss_pred HHHHHHhhccEEEEEecccHH---------------------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHH
Q 006555 431 QSRKNLMRAHVVALVLDAEEV---------------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQE 489 (640)
Q Consensus 431 ~~~~~i~~advvllVvDa~~~---------------------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~ 489 (640)
........+|++++|+|++.. .....++|+++|+||+|+.+.. .+..+.+. ..
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~----~~ 156 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR--DEVLDEIA----ER 156 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH--HHHHHHHH----HH
Confidence 111233457899999998641 1123589999999999997542 11112221 11
Q ss_pred HHhh-CCCCCCCcEEEeccccCCCHHHHHHHHHHHHH
Q 006555 490 IQTV-IPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQ 525 (640)
Q Consensus 490 ~~~~-~~~~~~~~~v~iSAk~g~gv~~l~~~i~~~~~ 525 (640)
+... .....+.+++++||++| |++++++.|.+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 157 LGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred hcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 1100 00001236899999999 99999999987653
No 276
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.76 E-value=4.2e-18 Score=163.06 Aligned_cols=154 Identities=19% Similarity=0.187 Sum_probs=101.4
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeE--EEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|+|||||++++++... ...+.++..+.....+.+++.. +.+|||||..+.... ...+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~~~~ 68 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL----------RPLS 68 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccccccc----------cccc
Confidence 5899999999999999999997643 3344455555555556666654 569999997554211 1134
Q ss_pred HhhccEEEEEecccHHH--------------HHHcCCcEEEEEeCCCCCCCccchHHHHHH-HHHcHHHHHhhCCCCCC-
Q 006555 436 LMRAHVVALVLDAEEVR--------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQVTG- 499 (640)
Q Consensus 436 i~~advvllVvDa~~~~--------------~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~- 499 (640)
+..+|++++|+|.++.. ....++|+++|+||+|+.+........... .+.+..+..+.+++..+
T Consensus 69 ~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 148 (174)
T cd04135 69 YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGA 148 (174)
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCC
Confidence 56899999999998760 112578999999999986543211111000 01122222222222223
Q ss_pred CcEEEeccccCCCHHHHHHHHHHH
Q 006555 500 IPVVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 500 ~~~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
.+++++||++|.|++++|+.+++.
T Consensus 149 ~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 149 HCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred CEEEEecCCcCCCHHHHHHHHHHH
Confidence 479999999999999999998875
No 277
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.76 E-value=7.9e-18 Score=158.74 Aligned_cols=142 Identities=20% Similarity=0.236 Sum_probs=95.3
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEE-CCeEEEEEEeCCCCcccccCCchhhHHHHHHHHHh
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY-QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 437 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 437 (640)
+|+++|.+|||||||+++|.+.......++.+.+. ..+.. .+..+.+|||||+.+.. .....++.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~l~i~D~~G~~~~~----------~~~~~~~~ 66 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNV----EMLQLEKHLSLTVWDVGGQEKMR----------TVWKCYLE 66 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcce----EEEEeCCceEEEEEECCCCHhHH----------HHHHHHhc
Confidence 58999999999999999999876543333333222 22333 34688999999964321 12335678
Q ss_pred hccEEEEEecccHH-----------HHH----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHH-hhCCCCCCCc
Q 006555 438 RAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQ-TVIPQVTGIP 501 (640)
Q Consensus 438 ~advvllVvDa~~~-----------~~~----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~ 501 (640)
.+|++++|+|+++. ... ..+.|+++|+||+|+.......+ +...+. ..+....+.+
T Consensus 67 ~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--------i~~~~~~~~~~~~~~~~ 138 (160)
T cd04156 67 NTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEE--------ITRRFKLKKYCSDRDWY 138 (160)
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHH--------HHHHcCCcccCCCCcEE
Confidence 89999999999875 111 14789999999999964322111 111111 1122223457
Q ss_pred EEEeccccCCCHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVID 522 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~ 522 (640)
++++||++|.|++++|+.|.+
T Consensus 139 ~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 139 VQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred EEecccccCCChHHHHHHHhc
Confidence 999999999999999998854
No 278
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.76 E-value=1.4e-18 Score=153.82 Aligned_cols=150 Identities=23% Similarity=0.181 Sum_probs=114.4
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
-++.+|+|+++||||+|+.++... .+.-+.+..+..|.....++++|. +++||||+|+.++ . ..+-.
T Consensus 8 LfkllIigDsgVGKssLl~rF~dd-tFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErF---------r-titst 76 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADD-TFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERF---------R-TITST 76 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhc-ccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHH---------H-HHHHH
Confidence 367889999999999999999854 444445555667888777877775 6789999996444 2 23446
Q ss_pred HHhhccEEEEEecccHH-------HHH---H---cCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 435 NLMRAHVVALVLDAEEV-------RAV---E---EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 435 ~i~~advvllVvDa~~~-------~~~---~---~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
+++..|++++|||+++. .++ . ...|-|+|+||.|+.+. +.+..+.++.++...++.
T Consensus 77 yyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~R-----------rvV~t~dAr~~A~~mgie 145 (198)
T KOG0079|consen 77 YYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPER-----------RVVDTEDARAFALQMGIE 145 (198)
T ss_pred HccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccc-----------eeeehHHHHHHHHhcCch
Confidence 88899999999999986 122 1 35678999999999875 233444555556666889
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHHHh
Q 006555 502 VVFTSALEGRGRIAVMHQVIDTYQKWC 528 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~~~~~~~ 528 (640)
++++|||+..|++..|..|.+...+..
T Consensus 146 ~FETSaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 146 LFETSAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred heehhhhhcccchHHHHHHHHHHHHHH
Confidence 999999999999999999988776554
No 279
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.76 E-value=1.1e-17 Score=158.05 Aligned_cols=142 Identities=18% Similarity=0.186 Sum_probs=96.5
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCcee-ecCcccceeeeEEEEEEECC--eEEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVL-VGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~-~~~~~gtT~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
+||+++|.+|||||||+++|++..... ..+..+.+.. ...+.+++ ..+.+|||||+.+.. .....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~~~----------~~~~~ 68 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFK--VKTLTVDGKKVKLAIWDTAGQERFR----------TLTSS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEE--EEEEEECCEEEEEEEEECCCchhhh----------hhhHH
Confidence 589999999999999999999765322 3333344333 23334444 467899999964331 11235
Q ss_pred HHhhccEEEEEecccHH-------HH--------HHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCC
Q 006555 435 NLMRAHVVALVLDAEEV-------RA--------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 499 (640)
Q Consensus 435 ~i~~advvllVvDa~~~-------~~--------~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 499 (640)
.++.+|++++|+|+++. .. ...+.|+++|+||+|+.......+.... .. ...+
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~--------~~----~~~~ 136 (161)
T cd01863 69 YYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLK--------FA----RKHN 136 (161)
T ss_pred HhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHH--------HH----HHcC
Confidence 56789999999999875 10 1246889999999999743221111111 11 1125
Q ss_pred CcEEEeccccCCCHHHHHHHHHHH
Q 006555 500 IPVVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 500 ~~~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
++++++||++|.|++++++.+.+.
T Consensus 137 ~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 137 MLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred CEEEEEecCCCCCHHHHHHHHHHh
Confidence 689999999999999999988753
No 280
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.76 E-value=1.4e-18 Score=156.00 Aligned_cols=148 Identities=17% Similarity=0.136 Sum_probs=111.5
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHH
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 433 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 433 (640)
..+||.++|.+|||||+|+-+++... +....-..+.+|.....+.++|. ++.||||||+.++. ..+-
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~-fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFR----------tLTp 78 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNT-FDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFR----------TLTP 78 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcc-cCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhh----------ccCH
Confidence 35899999999999999999998543 22111222456888888888887 55699999987663 1234
Q ss_pred HHHhhccEEEEEecccHH-------HH---H-----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCC
Q 006555 434 KNLMRAHVVALVLDAEEV-------RA---V-----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 498 (640)
Q Consensus 434 ~~i~~advvllVvDa~~~-------~~---~-----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 498 (640)
.++++|.++|+|||++.. .+ + ..++-.++|+||+|...+ +.+..+.+..+++..
T Consensus 79 SyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~-----------R~V~reEG~kfAr~h 147 (209)
T KOG0080|consen 79 SYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE-----------RVVDREEGLKFARKH 147 (209)
T ss_pred hHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc-----------ccccHHHHHHHHHhh
Confidence 688999999999999976 11 1 134556899999996543 345556666677777
Q ss_pred CCcEEEeccccCCCHHHHHHHHHHHHH
Q 006555 499 GIPVVFTSALEGRGRIAVMHQVIDTYQ 525 (640)
Q Consensus 499 ~~~~v~iSAk~g~gv~~l~~~i~~~~~ 525 (640)
.+-++++|||+.+||+..|+++++.+.
T Consensus 148 ~~LFiE~SAkt~~~V~~~FeelveKIi 174 (209)
T KOG0080|consen 148 RCLFIECSAKTRENVQCCFEELVEKII 174 (209)
T ss_pred CcEEEEcchhhhccHHHHHHHHHHHHh
Confidence 888999999999999999999887653
No 281
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.76 E-value=4e-18 Score=163.17 Aligned_cols=153 Identities=19% Similarity=0.213 Sum_probs=99.4
Q ss_pred EEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHHHh
Q 006555 360 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 437 (640)
Q Consensus 360 v~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 437 (640)
|+++|.+|||||||++++++... ...+..+..+.....+.+++. .+.+|||||+.+.. . ....+++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~-~~~~~~~ 68 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF--PEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYD---------R-LRPLSYP 68 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC--CCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccc---------h-hchhhcC
Confidence 58999999999999999997643 223333444444445566665 57799999975432 1 1123567
Q ss_pred hccEEEEEecccHH---H---------H--HHcCCcEEEEEeCCCCCCCccchHHHH-HHHHHcHHHHHhhCCCCCC-Cc
Q 006555 438 RAHVVALVLDAEEV---R---------A--VEEGRGLVVIVNKMDLLSGRQNSALYK-RVKEAVPQEIQTVIPQVTG-IP 501 (640)
Q Consensus 438 ~advvllVvDa~~~---~---------~--~~~~~p~Ilv~NK~Dl~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~-~~ 501 (640)
.+|++|+|+|+++. . . ...++|+|+|+||+|+.......+.+. .-.+.+..+....++...+ .+
T Consensus 69 ~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 148 (174)
T smart00174 69 DTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVK 148 (174)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcE
Confidence 89999999999875 0 0 113789999999999975321110000 0001122222222333334 38
Q ss_pred EEEeccccCCCHHHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
++++||++|.|++++|+.+.+.+
T Consensus 149 ~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 149 YLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred EEEecCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998754
No 282
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.76 E-value=7e-18 Score=159.33 Aligned_cols=144 Identities=22% Similarity=0.272 Sum_probs=100.9
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|||||||++++++.. ....+.+++.+........++. .+.+|||||+.+.. .....+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~~~~~~ 68 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA----------AIRDNY 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhh----------HHHHHH
Confidence 489999999999999999999654 2345555655555555566654 67899999964331 123356
Q ss_pred HhhccEEEEEecccHH-----------HHH----HcCCcEEEEEeCCCCCCCcc-chHHHHHHHHHcHHHHHhhCCCCCC
Q 006555 436 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQ-NSALYKRVKEAVPQEIQTVIPQVTG 499 (640)
Q Consensus 436 i~~advvllVvDa~~~-----------~~~----~~~~p~Ilv~NK~Dl~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~ 499 (640)
++.+|++++|+|+++. ... ..++|+++|+||+|+..... ....... .... .+
T Consensus 69 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~--------~~~~----~~ 136 (164)
T cd04139 69 HRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAAN--------LARQ----WG 136 (164)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHH--------HHHH----hC
Confidence 7789999999998764 111 14799999999999976221 1111111 1111 14
Q ss_pred CcEEEeccccCCCHHHHHHHHHHHHH
Q 006555 500 IPVVFTSALEGRGRIAVMHQVIDTYQ 525 (640)
Q Consensus 500 ~~~v~iSAk~g~gv~~l~~~i~~~~~ 525 (640)
.+++++||++|.|++++|+.+.+.+.
T Consensus 137 ~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 137 VPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999987653
No 283
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.76 E-value=9.2e-18 Score=163.36 Aligned_cols=152 Identities=29% Similarity=0.427 Sum_probs=109.7
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCcee-----------------ecCcccceeeeEEEEEE--ECCeEEEEEEeCCCCcc
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVL-----------------VGPEAGLTRDSVRVHFE--YQGRTVYLVDTAGWLQR 418 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~-----------------~~~~~gtT~d~~~~~~~--~~~~~~~liDTpG~~~~ 418 (640)
++|+++|+.++|||||+++|++..... .....+.|.+.....+. ..+..+.++||||+.++
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f 83 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDF 83 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHH
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccce
Confidence 589999999999999999998643211 11223677777777777 88999999999996433
Q ss_pred cccCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHH
Q 006555 419 EKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQ 488 (640)
Q Consensus 419 ~~~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~ 488 (640)
...+...+..+|++|+|+|+.++ .....++|+|+|+||+|+... .++...+++..
T Consensus 84 ----------~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~-----~~~~~~~~~~~ 148 (188)
T PF00009_consen 84 ----------IKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEK-----ELEEIIEEIKE 148 (188)
T ss_dssp ----------HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHH-----HHHHHHHHHHH
T ss_pred ----------eecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhh-----hHHHHHHHHHH
Confidence 13445678899999999999875 334578999999999999822 22233333333
Q ss_pred HHHhhCCCC--CCCcEEEeccccCCCHHHHHHHHHHHH
Q 006555 489 EIQTVIPQV--TGIPVVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 489 ~~~~~~~~~--~~~~~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
.+.+..... ..+|++++||++|.|+++|++.+.+.+
T Consensus 149 ~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 149 KLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred HhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 332222222 257999999999999999999988753
No 284
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.76 E-value=2e-17 Score=178.37 Aligned_cols=151 Identities=26% Similarity=0.314 Sum_probs=112.0
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEEC-CeEEEEEEeCCCCcccccCCchhhHHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ-GRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 436 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 436 (640)
-.|++||.||||||||+|+|++.. ..++++++||.++....+.++ +.++.+|||||+....... ..+ ....++++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~--~gL-g~~fLrhi 234 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEG--VGL-GHQFLRHI 234 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCCccccccc--chH-HHHHHHHH
Confidence 379999999999999999999765 457889999999988888877 7899999999986532111 111 23456778
Q ss_pred hhccEEEEEecccH-----H--------HHHH------cCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCC
Q 006555 437 MRAHVVALVLDAEE-----V--------RAVE------EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 497 (640)
Q Consensus 437 ~~advvllVvDa~~-----~--------~~~~------~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 497 (640)
+++|++|+|+|+++ + ..+. .++|+|||+||+|+... .+..+. +.+.+
T Consensus 235 er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~---~e~l~~--------l~~~l--- 300 (424)
T PRK12297 235 ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA---EENLEE--------FKEKL--- 300 (424)
T ss_pred hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC---HHHHHH--------HHHHh---
Confidence 88999999999963 1 1111 37899999999998432 111111 11111
Q ss_pred CCCcEEEeccccCCCHHHHHHHHHHHHHHH
Q 006555 498 TGIPVVFTSALEGRGRIAVMHQVIDTYQKW 527 (640)
Q Consensus 498 ~~~~~v~iSAk~g~gv~~l~~~i~~~~~~~ 527 (640)
..+++++||++++|++++++.+.+.+.+.
T Consensus 301 -~~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 301 -GPKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred -CCcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 15799999999999999999998876553
No 285
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.76 E-value=1e-17 Score=159.42 Aligned_cols=145 Identities=20% Similarity=0.201 Sum_probs=101.1
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
..+|+++|.+|||||||++++++.. ......++++.+.....+.+++. .+.+|||||+.+.. .....
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~~ 75 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFR----------SITQS 75 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH----------HHHHH
Confidence 4799999999999999999998653 22233444555666666777775 46789999964321 12245
Q ss_pred HHhhccEEEEEecccHH-------HH-------HHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 435 NLMRAHVVALVLDAEEV-------RA-------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 435 ~i~~advvllVvDa~~~-------~~-------~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
++..+|++++|+|+++. .. ...+.|+++|+||+|+....+... ... ..+. .....
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~---~~~----~~~~----~~~~~ 144 (169)
T cd04114 76 YYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQ---QRA----EEFS----DAQDM 144 (169)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCH---HHH----HHHH----HHcCC
Confidence 77889999999999864 11 113689999999999975432211 111 1111 12236
Q ss_pred cEEEeccccCCCHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
+++++||++|.|++++|+.|.+.
T Consensus 145 ~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 145 YYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHH
Confidence 79999999999999999998764
No 286
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.76 E-value=1e-17 Score=149.64 Aligned_cols=116 Identities=28% Similarity=0.420 Sum_probs=94.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 234 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 234 (640)
+|+|+|.+|||||||+|+|++.+.+.++..++ +|++.....+.+.+..+.++||||+.......... +........+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~--~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPG--TTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDG-KEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTT--SSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHH-HHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccccccc--ceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHH-HHHHHHHHHH
Confidence 59999999999999999999987788888887 88888888888899999999999998543222111 2344566777
Q ss_pred hccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecC
Q 006555 235 AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNK 276 (640)
Q Consensus 235 ~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK 276 (640)
..+|++++|+|++++....+.++.++|+ .++|+++|+||
T Consensus 78 ~~~d~ii~vv~~~~~~~~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPITEDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTSHSHHHHHHHHHHHH---TTSEEEEEEES
T ss_pred HHCCEEEEEEECCCCCCHHHHHHHHHHh---cCCCEEEEEcC
Confidence 9999999999988755555677778885 38999999998
No 287
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.76 E-value=9.6e-18 Score=159.92 Aligned_cols=145 Identities=22% Similarity=0.214 Sum_probs=99.2
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECC--eEEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|||||||++++++... ...+.+++.+.....+.+++ ..+.+|||||+.++. .....+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~ 69 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF--IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFT----------AMRELY 69 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEeCCCcccch----------hhhHHH
Confidence 6899999999999999999996642 23344444444445555655 467899999975442 122345
Q ss_pred HhhccEEEEEecccHH-----------HH----HHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 436 LMRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 436 i~~advvllVvDa~~~-----------~~----~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
++.+|++++|+|+++. .. ...++|+++++||+|+........ +.. ..+.+. ...+
T Consensus 70 ~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~--~~~-----~~~~~~---~~~~ 139 (168)
T cd04177 70 IKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSR--EDG-----VSLSQQ---WGNV 139 (168)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCH--HHH-----HHHHHH---cCCc
Confidence 6789999999999875 11 124789999999999975432110 000 011111 1236
Q ss_pred cEEEeccccCCCHHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
+++++||++|.|++++|+++...+
T Consensus 140 ~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 140 PFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999997643
No 288
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.75 E-value=6e-18 Score=164.77 Aligned_cols=155 Identities=17% Similarity=0.185 Sum_probs=98.5
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECC--eEEEEEEeCCCCcccccCCchhhHHHHHHHHH
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 436 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 436 (640)
||+++|.+|||||||++++++.... ..+..+..+.....+..++ ..+.||||||+.+... . ...++
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~---------l-~~~~~ 69 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFP--QVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDR---------L-RSLSY 69 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CccCCcceeeeEEEEEECCEEEEEEEEECCCChhccc---------c-ccccc
Confidence 7999999999999999999976432 2222222222233344555 4678999999754321 1 12356
Q ss_pred hhccEEEEEecccHH--------HH------HHcCCcEEEEEeCCCCCCCccchHHHHHHH-HHcHHHHHhhCC-CCCCC
Q 006555 437 MRAHVVALVLDAEEV--------RA------VEEGRGLVVIVNKMDLLSGRQNSALYKRVK-EAVPQEIQTVIP-QVTGI 500 (640)
Q Consensus 437 ~~advvllVvDa~~~--------~~------~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~-~~v~~~~~~~~~-~~~~~ 500 (640)
+.+|++++|+|+++. .. ...+.|+|+|+||+|+.+.....+...... +.+..+....++ ....+
T Consensus 70 ~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 149 (189)
T cd04134 70 ADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINAL 149 (189)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCC
Confidence 789999999999876 01 113789999999999976532211111000 011111111111 12236
Q ss_pred cEEEeccccCCCHHHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDTYQ 525 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~~~ 525 (640)
+++++||++|.|++++|+++.+.+.
T Consensus 150 ~~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 150 RYLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred EEEEccCCcCCCHHHHHHHHHHHHh
Confidence 8999999999999999999987654
No 289
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.75 E-value=1.9e-17 Score=157.27 Aligned_cols=150 Identities=18% Similarity=0.209 Sum_probs=102.6
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEEC---CeEEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ---GRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
.|+++|.+|+|||||+|+|++.. ......+++|.+.....+..+ +..+.+|||||+... .. .....
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~---------~~-~~~~~ 70 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTN-VAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF---------TN-MRARG 70 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcc-cccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH---------HH-HHHHH
Confidence 48999999999999999999764 333445567777655555554 678999999996432 11 12345
Q ss_pred HhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhC-CCCCCCcEEE
Q 006555 436 LMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVI-PQVTGIPVVF 504 (640)
Q Consensus 436 i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~v~ 504 (640)
+..+|++++|+|+++. .....++|+++|+||+|+.... .....+.+ ........ ......++++
T Consensus 71 ~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 145 (168)
T cd01887 71 ASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNAN-PERVKNEL----SELGLQGEDEWGGDVQIVP 145 (168)
T ss_pred HhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccccc-HHHHHHHH----HHhhccccccccCcCcEEE
Confidence 6789999999999863 2234689999999999987432 11111111 11100000 1122468999
Q ss_pred eccccCCCHHHHHHHHHHHH
Q 006555 505 TSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 505 iSAk~g~gv~~l~~~i~~~~ 524 (640)
+||++|.|++++++.+.+..
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 146 TSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred eecccCCCHHHHHHHHHHhh
Confidence 99999999999999988754
No 290
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.75 E-value=5.2e-18 Score=162.28 Aligned_cols=146 Identities=27% Similarity=0.288 Sum_probs=105.2
Q ss_pred EEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEEC-CeEEEEEEeCCCCcccccCCchhhHHHHHHHHHhhcc
Q 006555 362 IVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ-GRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAH 440 (640)
Q Consensus 362 ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad 440 (640)
++|++|||||||+|+|++.+. .+++++++|+++....+.++ +.++.+|||||+.+..... +.+. ......+..+|
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~--~~~~-~~~~~~~~~~d 76 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEG--RGLG-NQFLAHIRRAD 76 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcC--CCcc-HHHHHHHhccC
Confidence 579999999999999998764 67788899998888778888 8999999999985432111 1111 12345677899
Q ss_pred EEEEEecccHHH-----------------H--H--------HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhh
Q 006555 441 VVALVLDAEEVR-----------------A--V--------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTV 493 (640)
Q Consensus 441 vvllVvDa~~~~-----------------~--~--------~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~ 493 (640)
++++|+|+++.. . . ..++|+++|+||+|+.......... ...
T Consensus 77 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~-----------~~~ 145 (176)
T cd01881 77 AILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL-----------VRE 145 (176)
T ss_pred EEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH-----------HHH
Confidence 999999987420 0 0 1378999999999997653211100 111
Q ss_pred CCCCCCCcEEEeccccCCCHHHHHHHHHH
Q 006555 494 IPQVTGIPVVFTSALEGRGRIAVMHQVID 522 (640)
Q Consensus 494 ~~~~~~~~~v~iSAk~g~gv~~l~~~i~~ 522 (640)
.......+++++||+++.|++++++.+..
T Consensus 146 ~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 146 LALEEGAEVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred HhcCCCCCEEEEehhhhcCHHHHHHHHHh
Confidence 12233567999999999999999998865
No 291
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.75 E-value=1.5e-17 Score=161.85 Aligned_cols=153 Identities=17% Similarity=0.163 Sum_probs=105.9
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
..+|+++|.+|||||||+++|.+....... .|.......+.+++..+.+|||||.. ++......
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~~------~T~~~~~~~i~~~~~~~~l~D~~G~~----------~~~~~~~~ 82 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHV------PTLHPTSEELTIGNIKFKTFDLGGHE----------QARRLWKD 82 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcccC------CccCcceEEEEECCEEEEEEECCCCH----------HHHHHHHH
Confidence 468999999999999999999987643211 23333445677788999999999986 44455667
Q ss_pred HHhccceEEEEeecCCCCChhh--HHHHHHHHHh-CCCCcEEEEecCCCCCcCCccchHHHHHHHHhc------------
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLML------------ 297 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~--~~~~~~L~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~------------ 297 (640)
++..+|++++|+|+++..+... ..+.+.++.. ..+.|+++|+||+|+... ....+....+...
T Consensus 83 ~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (190)
T cd00879 83 YFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA--VSEEELRQALGLYGTTTGKGVSLKV 160 (190)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC--cCHHHHHHHhCcccccccccccccc
Confidence 8899999999999987544332 1122222211 246899999999998643 2223332222211
Q ss_pred --C-CCCcEEeeccCCCChhHHHHHhccc
Q 006555 298 --G-FGDPIAISAETGLGMTELYEALRPS 323 (640)
Q Consensus 298 --g-~~~~i~iSA~~g~gi~eL~~~I~~~ 323 (640)
. ...++++||++|.|+++++++|.+.
T Consensus 161 ~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 161 SGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 0 1146999999999999999998754
No 292
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.75 E-value=3.1e-17 Score=154.46 Aligned_cols=154 Identities=27% Similarity=0.391 Sum_probs=110.3
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 436 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 436 (640)
..+|+++|.+|+|||||+|++++.......+.++++++.........+..+.+|||||+....... ...........+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL--GERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHH--HHHHHHHHHHHH
Confidence 368999999999999999999998777777778888877776666677899999999986542111 111122344567
Q ss_pred hhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEec
Q 006555 437 MRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTS 506 (640)
Q Consensus 437 ~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iS 506 (640)
..+|++++|+|+++. .....+.|+++|+||+|+..... . ...+. ..+.. .....+++++|
T Consensus 81 ~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~--~-~~~~~----~~~~~---~~~~~~~~~~s 150 (168)
T cd04163 81 KDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKE--D-LLPLL----EKLKE---LGPFAEIFPIS 150 (168)
T ss_pred HhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHH--H-HHHHH----HHHHh---ccCCCceEEEE
Confidence 889999999999874 12234689999999999974321 1 11111 11111 12246899999
Q ss_pred cccCCCHHHHHHHHHH
Q 006555 507 ALEGRGRIAVMHQVID 522 (640)
Q Consensus 507 Ak~g~gv~~l~~~i~~ 522 (640)
++++.|++++++.|.+
T Consensus 151 ~~~~~~~~~l~~~l~~ 166 (168)
T cd04163 151 ALKGENVDELLEEIVK 166 (168)
T ss_pred eccCCChHHHHHHHHh
Confidence 9999999999998865
No 293
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.75 E-value=2e-17 Score=162.27 Aligned_cols=152 Identities=17% Similarity=0.196 Sum_probs=108.9
Q ss_pred EeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEEC--CeeEEEEeCCCCccccCccchHHHHHHHHHHHHhc
Q 006555 159 IGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTANVLAK 236 (640)
Q Consensus 159 vG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 236 (640)
||.+|||||||+++++...... ... .++..+.....+..+ ...+.+|||||.+ ++..+...+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~--~~~-~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e----------~~~~l~~~~~~~ 67 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEK--KYV-ATLGVEVHPLVFHTNRGPIRFNVWDTAGQE----------KFGGLRDGYYIQ 67 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCC--CCC-CceeEEEEEEEEEECCEEEEEEEEECCCch----------hhhhhhHHHhcC
Confidence 6999999999999999754321 111 113334433444443 4689999999998 566677789999
Q ss_pred cceEEEEeecCCCCChhhH-HHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCChhH
Q 006555 237 TQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 315 (640)
Q Consensus 237 ad~vl~VvD~s~~~~~~~~-~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~gi~e 315 (640)
+|++++|+|++++.+.... .+.+.+++..++.|+++|+||+|+.... +.. +........++ .++++||++|.||++
T Consensus 68 ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~-v~~-~~~~~~~~~~~-~~~e~SAk~~~~v~~ 144 (200)
T smart00176 68 GQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRK-VKA-KSITFHRKKNL-QYYDISAKSNYNFEK 144 (200)
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc-CCH-HHHHHHHHcCC-EEEEEeCCCCCCHHH
Confidence 9999999999988777643 2444455545689999999999986432 222 22334445555 689999999999999
Q ss_pred HHHHhccchHH
Q 006555 316 LYEALRPSVED 326 (640)
Q Consensus 316 L~~~I~~~l~~ 326 (640)
+|+.|...+.+
T Consensus 145 ~F~~l~~~i~~ 155 (200)
T smart00176 145 PFLWLARKLIG 155 (200)
T ss_pred HHHHHHHHHHh
Confidence 99999876643
No 294
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.75 E-value=2.1e-17 Score=156.11 Aligned_cols=156 Identities=23% Similarity=0.311 Sum_probs=119.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCe--eEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
||+++|.++||||||++++.+....... .+ +...+.....+..++. .+.+|||+|.+ ++......
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~-~~--t~~~~~~~~~~~~~~~~~~l~i~D~~g~~----------~~~~~~~~ 67 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENY-IP--TIGIDSYSKEVSIDGKPVNLEIWDTSGQE----------RFDSLRDI 67 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSS-ET--TSSEEEEEEEEEETTEEEEEEEEEETTSG----------GGHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccc-cc--ccccccccccccccccccccccccccccc----------cccccccc
Confidence 6999999999999999999987542211 11 1335666666666654 69999999987 33344456
Q ss_pred HHhccceEEEEeecCCCCChhhH-HHHHHHHHhCC-CCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCC
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAP-QIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 310 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~~~-~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g 310 (640)
.+..+|++++|+|.+++.+.+.. .+.+.+....+ +.|+++|+||+|+........++....+..++. .++++||+++
T Consensus 68 ~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~ 146 (162)
T PF00071_consen 68 FYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGV-PYFEVSAKNG 146 (162)
T ss_dssp HHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTS-EEEEEBTTTT
T ss_pred cccccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCC-EEEEEECCCC
Confidence 78999999999999987666652 24444444555 689999999999988666666677777888884 8999999999
Q ss_pred CChhHHHHHhccch
Q 006555 311 LGMTELYEALRPSV 324 (640)
Q Consensus 311 ~gi~eL~~~I~~~l 324 (640)
.|+.+++..+.+.+
T Consensus 147 ~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 147 ENVKEIFQELIRKI 160 (162)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999887654
No 295
>PLN03108 Rab family protein; Provisional
Probab=99.75 E-value=1.2e-17 Score=165.42 Aligned_cols=147 Identities=20% Similarity=0.144 Sum_probs=101.6
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
.+||+++|.+|||||||+++|++.... ....+.++.+.....+.+++. .+.+|||||..+. . .....
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~-~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~---------~-~~~~~ 74 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF---------R-SITRS 74 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHH---------H-HHHHH
Confidence 479999999999999999999976432 223334444444455566664 5679999995432 1 12345
Q ss_pred HHhhccEEEEEecccHH-------H----H---HHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 435 NLMRAHVVALVLDAEEV-------R----A---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 435 ~i~~advvllVvDa~~~-------~----~---~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
+++.+|++|+|+|+++. . . .....|+++|+||+|+.+..... .+..+.++...++
T Consensus 75 ~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~-----------~~~~~~~~~~~~~ 143 (210)
T PLN03108 75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS-----------TEEGEQFAKEHGL 143 (210)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCC-----------HHHHHHHHHHcCC
Confidence 67789999999999875 1 1 11368999999999997642211 1111111122356
Q ss_pred cEEEeccccCCCHHHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDTYQ 525 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~~~ 525 (640)
+++++||+++.|++++|+++.+.+.
T Consensus 144 ~~~e~Sa~~~~~v~e~f~~l~~~~~ 168 (210)
T PLN03108 144 IFMEASAKTAQNVEEAFIKTAAKIY 168 (210)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999998886653
No 296
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.75 E-value=2.9e-17 Score=158.24 Aligned_cols=158 Identities=14% Similarity=0.115 Sum_probs=109.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+|+|.+|||||||++++++.... ..... ++.+.........+ ..+.+|||||+. ++.....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~ 67 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV--ESYYP--TIENTFSKIIRYKGQDYHLEIVDTAGQD----------EYSILPQ 67 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--cccCc--chhhhEEEEEEECCEEEEEEEEECCChH----------hhHHHHH
Confidence 38999999999999999999986542 21222 33333344445544 457899999987 3444555
Q ss_pred HHHhccceEEEEeecCCCCChhhH-HHHHHHHH-h-CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeecc
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRK-H-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~-~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~ 308 (640)
.++..+|.+++|+|.++..+.+.. .+.+.+.+ . ..+.|+++|+||+|+..................+. .++++||+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 146 (180)
T cd04137 68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGA-AFLESSAR 146 (180)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCC-eEEEEeCC
Confidence 678899999999999986555432 22222222 1 23679999999999976443333333333444453 68999999
Q ss_pred CCCChhHHHHHhccchHH
Q 006555 309 TGLGMTELYEALRPSVED 326 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~l~~ 326 (640)
+|.|+.++++.+.+.+..
T Consensus 147 ~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 147 ENENVEEAFELLIEEIEK 164 (180)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999877653
No 297
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.75 E-value=1.1e-17 Score=188.79 Aligned_cols=146 Identities=27% Similarity=0.349 Sum_probs=109.3
Q ss_pred eCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHHhhccEEE
Q 006555 364 GRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVA 443 (640)
Q Consensus 364 G~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~advvl 443 (640)
|+||||||||+|+|+|.. ..+++++|+|++...+.+++++.++.+|||||+.+.......|.. .+.......+|+++
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v--~~~~l~~~~aDvvI 77 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEV--ARDYLLNEKPDLVV 77 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHH--HHHHHhhcCCCEEE
Confidence 899999999999999875 578999999999999899999999999999998765322111111 11111224699999
Q ss_pred EEecccHH--------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEeccccCCCHHH
Q 006555 444 LVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIA 515 (640)
Q Consensus 444 lVvDa~~~--------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g~gv~~ 515 (640)
+|+|+++. +..+.++|+++|+||+|+.+........+. +.+ ..++|++++||++|+|+++
T Consensus 78 ~VvDat~ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~--------L~~----~lg~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 78 NVVDASNLERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEK--------LEE----RLGVPVVPTSATEGRGIER 145 (591)
T ss_pred EEecCCcchhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHH--------HHH----HcCCCEEEEECCCCCCHHH
Confidence 99999875 334578999999999998754332211111 111 2357999999999999999
Q ss_pred HHHHHHHHH
Q 006555 516 VMHQVIDTY 524 (640)
Q Consensus 516 l~~~i~~~~ 524 (640)
+++.+.+..
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999998753
No 298
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.75 E-value=1.4e-17 Score=168.75 Aligned_cols=145 Identities=17% Similarity=0.211 Sum_probs=100.8
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|||||||++++++... ...+.+|+.|.....+.+++. .+.||||||..++ ..++ ..+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f--~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~---------~~~~-~~~ 68 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRF--EEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPF---------PAMR-RLS 68 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhh---------hHHH-HHH
Confidence 4899999999999999999986643 224445555666666777775 5679999996433 1122 235
Q ss_pred HhhccEEEEEecccHH-----------HHH------------HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHh
Q 006555 436 LMRAHVVALVLDAEEV-----------RAV------------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQT 492 (640)
Q Consensus 436 i~~advvllVvDa~~~-----------~~~------------~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~ 492 (640)
+..+|++|+|||+++. ... ..++|+|+|+||+|+....... .+ ++.+
T Consensus 69 ~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~--~~--------ei~~ 138 (247)
T cd04143 69 ILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQ--RD--------EVEQ 138 (247)
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccC--HH--------HHHH
Confidence 6789999999999875 111 1368999999999997532111 11 1111
Q ss_pred hCCCCCCCcEEEeccccCCCHHHHHHHHHHHH
Q 006555 493 VIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 493 ~~~~~~~~~~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
.+.....++++++||++|.|++++|+.|.+..
T Consensus 139 ~~~~~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 139 LVGGDENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred HHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 11112256799999999999999999998754
No 299
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.75 E-value=9.3e-18 Score=167.34 Aligned_cols=166 Identities=21% Similarity=0.249 Sum_probs=122.8
Q ss_pred ccccCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCe-eEEEEeCCCCccccCccchHHHH
Q 006555 148 IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL-RFKVLDSAGLETEATSGSILDRT 226 (640)
Q Consensus 148 ~~~~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~ 226 (640)
++...++.|++||.||+|||||+|+|+..+. .|.++++ ||.....+.+.+++. ++.+-|.||+++.++.+.-+.
T Consensus 191 lELKsiadvGLVG~PNAGKSTLL~als~AKp-kVa~YaF--TTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG-- 265 (366)
T KOG1489|consen 191 LELKSIADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAF--TTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLG-- 265 (366)
T ss_pred EEeeeecccceecCCCCcHHHHHHHhhccCC-cccccce--eeeccccceeeccccceeEeccCccccccccccCccc--
Confidence 4556678999999999999999999999875 5666665 999999999988775 499999999998877655433
Q ss_pred HHHHHHHHhccceEEEEeecCCCC---ChhhHH-HH---HHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCC
Q 006555 227 AGMTANVLAKTQFAIFMIDVRSGL---HPLDLE-VG---KWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF 299 (640)
Q Consensus 227 ~~~~~~~~~~ad~vl~VvD~s~~~---~~~~~~-~~---~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~ 299 (640)
..-+.++++++.++||+|.+.+. ..++.+ +. +...+...++|.++|+||+|+.+.+. ......+..+.-
T Consensus 266 -~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~---~~l~~L~~~lq~ 341 (366)
T KOG1489|consen 266 -YKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK---NLLSSLAKRLQN 341 (366)
T ss_pred -HHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH---HHHHHHHHHcCC
Confidence 22367899999999999999872 222222 11 22233345789999999999864311 111233344444
Q ss_pred CCcEEeeccCCCChhHHHHHhcc
Q 006555 300 GDPIAISAETGLGMTELYEALRP 322 (640)
Q Consensus 300 ~~~i~iSA~~g~gi~eL~~~I~~ 322 (640)
..++++||+.++|+.+|++.|..
T Consensus 342 ~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 342 PHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred CcEEEeeeccccchHHHHHHHhh
Confidence 46899999999999999988764
No 300
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.75 E-value=1.1e-17 Score=166.35 Aligned_cols=155 Identities=17% Similarity=0.199 Sum_probs=102.6
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||++||.+|||||||++++++... ...+..|..+.....+.+++. .+.||||+|...+ ...+ ..+
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f--~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~---------~~l~-~~~ 69 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY--PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYY---------DNVR-PLA 69 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCccCCccccceEEEEEECCEEEEEEEEeCCCcHHH---------HHHh-HHh
Confidence 6899999999999999999997542 223333433444445666665 5668999996432 1122 246
Q ss_pred HhhccEEEEEecccHH--------HH------HHcCCcEEEEEeCCCCCCCccchHHHHH-HHHHcHHHHHhhCCCCCC-
Q 006555 436 LMRAHVVALVLDAEEV--------RA------VEEGRGLVVIVNKMDLLSGRQNSALYKR-VKEAVPQEIQTVIPQVTG- 499 (640)
Q Consensus 436 i~~advvllVvDa~~~--------~~------~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~- 499 (640)
++.+|++|+|||+++. .+ ...+.|+|||+||+|+............ -...+..+.++.++...+
T Consensus 70 ~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~ 149 (222)
T cd04173 70 YPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGA 149 (222)
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCC
Confidence 7899999999999986 01 1247899999999999653211000000 000133334444444445
Q ss_pred CcEEEeccccCCC-HHHHHHHHHHHH
Q 006555 500 IPVVFTSALEGRG-RIAVMHQVIDTY 524 (640)
Q Consensus 500 ~~~v~iSAk~g~g-v~~l~~~i~~~~ 524 (640)
++++++||+++.| |+++|+.+..+.
T Consensus 150 ~~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 150 VSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred CEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 4899999999985 999999988754
No 301
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.75 E-value=2.3e-17 Score=190.36 Aligned_cols=159 Identities=26% Similarity=0.271 Sum_probs=118.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCc---cchHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATS---GSILDRTAGMT 230 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~---~~~~~~~~~~~ 230 (640)
.+|+++|.||||||||+|+|++.+. .+++.+| +|.+...+.+.+++.++.+|||||+.+.... ....++ ..
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pG--vTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~---i~ 77 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAG--VTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQ---IA 77 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCC--ceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHH---HH
Confidence 4899999999999999999999764 6788888 9999999999989999999999999754321 111111 12
Q ss_pred HHH--HhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeecc
Q 006555 231 ANV--LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 231 ~~~--~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~ 308 (640)
..+ ...+|++++|+|+++.. .+..+...+.+. ++|+++|+||+|+.+..... .+.......+|. +++++||.
T Consensus 78 ~~~l~~~~aD~vI~VvDat~le--r~l~l~~ql~e~--giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~-pVvpiSA~ 151 (772)
T PRK09554 78 CHYILSGDADLLINVVDASNLE--RNLYLTLQLLEL--GIPCIVALNMLDIAEKQNIR-IDIDALSARLGC-PVIPLVST 151 (772)
T ss_pred HHHHhccCCCEEEEEecCCcch--hhHHHHHHHHHc--CCCEEEEEEchhhhhccCcH-HHHHHHHHHhCC-CEEEEEee
Confidence 223 35899999999998743 233444555555 79999999999987543322 223333456776 78999999
Q ss_pred CCCChhHHHHHhccch
Q 006555 309 TGLGMTELYEALRPSV 324 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~l 324 (640)
+|+|++++.+.+.+..
T Consensus 152 ~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 152 RGRGIEALKLAIDRHQ 167 (772)
T ss_pred cCCCHHHHHHHHHHhh
Confidence 9999999999987643
No 302
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.75 E-value=2.6e-17 Score=160.64 Aligned_cols=144 Identities=22% Similarity=0.258 Sum_probs=102.1
Q ss_pred ceEEEEeCCCCchHHHHHHHhcC------Cce---------eecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccC
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQE------DRV---------LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEK 422 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~------~~~---------~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~ 422 (640)
++|+++|++|+|||||+++|++. ... ......|+|.+.....++.++.++.++||||+.++
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~---- 78 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY---- 78 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHH----
Confidence 68999999999999999999864 111 11125688999887788888899999999997432
Q ss_pred CchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCc-EEEEEeCCCCCCCccchHHHHHHHHHcHHHHH
Q 006555 423 GPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQ 491 (640)
Q Consensus 423 ~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p-~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~ 491 (640)
...+...+..+|++++|+|+.++ .....++| +|+++||+|+.... +.++.+.+++...+.
T Consensus 79 ------~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~---~~~~~~~~~i~~~l~ 149 (195)
T cd01884 79 ------IKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDE---ELLELVEMEVRELLS 149 (195)
T ss_pred ------HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcH---HHHHHHHHHHHHHHH
Confidence 23445677889999999999864 23346777 78999999997432 223333333433333
Q ss_pred hhCCCCCCCcEEEeccccCCCHH
Q 006555 492 TVIPQVTGIPVVFTSALEGRGRI 514 (640)
Q Consensus 492 ~~~~~~~~~~~v~iSAk~g~gv~ 514 (640)
+.-....++|++++||++|.|+.
T Consensus 150 ~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 150 KYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred HhcccccCCeEEEeeCccccCCC
Confidence 32112246899999999999864
No 303
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.75 E-value=2.5e-17 Score=157.15 Aligned_cols=152 Identities=19% Similarity=0.109 Sum_probs=102.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 234 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 234 (640)
+|+++|.+|||||||+++|++........+.+ .....+..++..+.+|||||.. ++..+...++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g------~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~ 64 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVG------FTPTKLRLDKYEVCIFDLGGGA----------NFRGIWVNYY 64 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCccc------ceEEEEEECCEEEEEEECCCcH----------HHHHHHHHHH
Confidence 48999999999999999999863222222222 2234566788899999999986 4556677899
Q ss_pred hccceEEEEeecCCCCChhh-HHHHHHHHHh--CCCCcEEEEecCCCCCcCCccchHHHHHHHHh----cCCC-CcEEee
Q 006555 235 AKTQFAIFMIDVRSGLHPLD-LEVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLM----LGFG-DPIAIS 306 (640)
Q Consensus 235 ~~ad~vl~VvD~s~~~~~~~-~~~~~~L~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~----~g~~-~~i~iS 306 (640)
+.+|++++|+|+++..+..+ ..++..+... ..++|+++|+||+|+................. .+.. .++++|
T Consensus 65 ~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~S 144 (167)
T cd04161 65 AEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCS 144 (167)
T ss_pred cCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeE
Confidence 99999999999998655443 1222222221 24789999999999976542111111111111 1221 457799
Q ss_pred ccCC------CChhHHHHHhcc
Q 006555 307 AETG------LGMTELYEALRP 322 (640)
Q Consensus 307 A~~g------~gi~eL~~~I~~ 322 (640)
|++| .|+++.+++|..
T Consensus 145 a~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 145 AIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred ceeCCCCccccCHHHHHHHHhc
Confidence 9998 899999999864
No 304
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.74 E-value=8.7e-18 Score=160.60 Aligned_cols=148 Identities=17% Similarity=0.134 Sum_probs=99.0
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCceeecCccccee-eeEEEEEEECC--eEEEEEEeCCCCcccccCCchhhHHHHH
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTR-DSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQS 432 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~-d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 432 (640)
+.+||+++|.+|||||||++++++... .+..+.+|+. +.....+.++| ..+.+|||+|..... ...
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f-~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~----------~~~ 71 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSF-SLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAI----------LLN 71 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCC-CcccCCCccCcceEEEEEEECCeEEEEEEEecCCccccc----------ccc
Confidence 357999999999999999999997653 2234444443 33334456666 467799999965432 112
Q ss_pred HHHHhhccEEEEEecccHH-------HHH-----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 433 RKNLMRAHVVALVLDAEEV-------RAV-----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 433 ~~~i~~advvllVvDa~~~-------~~~-----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
..+++++|++|+|+|++++ ... ..++|+++|+||+|+.+...... . -..++.+.+. ..
T Consensus 72 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~--~-----~~~~~~~~~~---~~ 141 (169)
T cd01892 72 DAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYE--V-----QPDEFCRKLG---LP 141 (169)
T ss_pred hhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccc--c-----CHHHHHHHcC---CC
Confidence 3456899999999999876 111 13689999999999965421100 0 0011222211 12
Q ss_pred cEEEeccccCCCHHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
+++++||++|.|++++|+.+.+.+
T Consensus 142 ~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 142 PPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred CCEEEEeccCccHHHHHHHHHHHh
Confidence 468999999999999999998764
No 305
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.74 E-value=2e-17 Score=159.96 Aligned_cols=151 Identities=26% Similarity=0.355 Sum_probs=106.2
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeec---------------CcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCC
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVG---------------PEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKG 423 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~---------------~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~ 423 (640)
+|+++|.+|+|||||+|+|++....... ...++|.+.....+.+.+..+.+|||||+.+..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~---- 76 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFS---- 76 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHH----
Confidence 4899999999999999999977543221 234566666666677778899999999964331
Q ss_pred chhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhh
Q 006555 424 PASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTV 493 (640)
Q Consensus 424 ~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~ 493 (640)
..+..++..+|++++|+|++++ .....++|+++|+||+|+..........+.+. ..+...
T Consensus 77 ------~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~----~~~~~~ 146 (189)
T cd00881 77 ------SEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIK----ELLGLI 146 (189)
T ss_pred ------HHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHH----HHHccc
Confidence 2344667789999999999864 12235899999999999986433222222222 222111
Q ss_pred ---------CCCCCCCcEEEeccccCCCHHHHHHHHHHH
Q 006555 494 ---------IPQVTGIPVVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 494 ---------~~~~~~~~~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
.......+++++||++|.|++++++.+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~ 185 (189)
T cd00881 147 GFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEH 185 (189)
T ss_pred cccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhh
Confidence 112346789999999999999999888765
No 306
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.74 E-value=6.5e-18 Score=169.25 Aligned_cols=161 Identities=24% Similarity=0.283 Sum_probs=121.7
Q ss_pred ccCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHH
Q 006555 150 INLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGM 229 (640)
Q Consensus 150 ~~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 229 (640)
..+..+|++||.||||||||+|+|++.+ +.+.++++ ||.....+.+.++|.+++++|+||+.+++..+.-+. ++
T Consensus 60 KsGda~v~lVGfPsvGKStLL~~LTnt~-seva~y~F--TTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG---~~ 133 (365)
T COG1163 60 KSGDATVALVGFPSVGKSTLLNKLTNTK-SEVADYPF--TTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRG---RQ 133 (365)
T ss_pred ccCCeEEEEEcCCCccHHHHHHHHhCCC-ccccccCc--eecccccceEeecCceEEEEcCcccccCcccCCCCc---ce
Confidence 4455799999999999999999999976 45667776 999999999999999999999999998877665433 45
Q ss_pred HHHHHhccceEEEEeecCCCCChh------------------------------------------hHH-HHHHHHHh--
Q 006555 230 TANVLAKTQFAIFMIDVRSGLHPL------------------------------------------DLE-VGKWLRKH-- 264 (640)
Q Consensus 230 ~~~~~~~ad~vl~VvD~s~~~~~~------------------------------------------~~~-~~~~L~~~-- 264 (640)
....+++||+|++|+|+....... |.+ +...|+++
T Consensus 134 vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I 213 (365)
T COG1163 134 VLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRI 213 (365)
T ss_pred eeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCc
Confidence 677899999999999998543311 111 11122221
Q ss_pred -----------------------CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCChhHHHHHhc
Q 006555 265 -----------------------APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALR 321 (640)
Q Consensus 265 -----------------------~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~gi~eL~~~I~ 321 (640)
..-+|.+.|+||+|+.... ....+.... +.+++||+.|.|+++|.+.|.
T Consensus 214 ~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e------~~~~l~~~~--~~v~isa~~~~nld~L~e~i~ 285 (365)
T COG1163 214 HNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLE------ELERLARKP--NSVPISAKKGINLDELKERIW 285 (365)
T ss_pred ccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHH------HHHHHHhcc--ceEEEecccCCCHHHHHHHHH
Confidence 0147899999999998732 122222222 779999999999999999998
Q ss_pred cch
Q 006555 322 PSV 324 (640)
Q Consensus 322 ~~l 324 (640)
+.+
T Consensus 286 ~~L 288 (365)
T COG1163 286 DVL 288 (365)
T ss_pred Hhh
Confidence 866
No 307
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.2e-17 Score=148.49 Aligned_cols=147 Identities=20% Similarity=0.155 Sum_probs=111.2
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCce-eecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHH
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRV-LVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQS 432 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~-~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~ 432 (640)
.-+|++++|..|+|||+|+.++.....- .++.+.| ++.....+.++++ +++||||+|+.++. .-+
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiG--veFgSrIinVGgK~vKLQIWDTAGQErFR----------SVt 75 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIG--VEFGSRIVNVGGKTVKLQIWDTAGQERFR----------SVT 75 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceee--eeecceeeeecCcEEEEEEeecccHHHHH----------HHH
Confidence 3579999999999999999999854321 2333333 4444555566654 67899999975543 456
Q ss_pred HHHHhhccEEEEEecccHH--------------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCC
Q 006555 433 RKNLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 498 (640)
Q Consensus 433 ~~~i~~advvllVvDa~~~--------------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 498 (640)
+.|+++|-++++|||+++. .....++-+|+++||-||... +++....+..+++.+
T Consensus 76 RsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~-----------R~VtflEAs~FaqEn 144 (214)
T KOG0086|consen 76 RSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPE-----------REVTFLEASRFAQEN 144 (214)
T ss_pred HHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChh-----------hhhhHHHHHhhhccc
Confidence 7899999999999999976 111246778999999999765 345555666777777
Q ss_pred CCcEEEeccccCCCHHHHHHHHHHHHH
Q 006555 499 GIPVVFTSALEGRGRIAVMHQVIDTYQ 525 (640)
Q Consensus 499 ~~~~v~iSAk~g~gv~~l~~~i~~~~~ 525 (640)
.+-++++||++|+|++|.|-.+.+.+.
T Consensus 145 el~flETSa~TGeNVEEaFl~c~~tIl 171 (214)
T KOG0086|consen 145 ELMFLETSALTGENVEEAFLKCARTIL 171 (214)
T ss_pred ceeeeeecccccccHHHHHHHHHHHHH
Confidence 888999999999999999988877654
No 308
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.74 E-value=1.3e-17 Score=157.54 Aligned_cols=138 Identities=17% Similarity=0.169 Sum_probs=93.2
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|||||||+.+++..... ..++.+ .......+.++|. .+.+|||+|+.. ..+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~--~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~---------------~~~ 62 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYV--QLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD---------------AQF 62 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCC--CCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc---------------hhH
Confidence 48999999999999999999865322 222222 2223355677774 577999999632 124
Q ss_pred HhhccEEEEEecccHH-----------HH--HH--cCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCC-CCCC
Q 006555 436 LMRAHVVALVLDAEEV-----------RA--VE--EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIP-QVTG 499 (640)
Q Consensus 436 i~~advvllVvDa~~~-----------~~--~~--~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~ 499 (640)
++.+|++++|+|.++. .. .. .+.|+++|+||+|+...... .+..+..+.++ ....
T Consensus 63 ~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~---------~v~~~~~~~~~~~~~~ 133 (158)
T cd04103 63 ASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPR---------VIDDARARQLCADMKR 133 (158)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCc---------ccCHHHHHHHHHHhCC
Confidence 5679999999999986 11 11 35799999999998532111 11111111111 1224
Q ss_pred CcEEEeccccCCCHHHHHHHHHH
Q 006555 500 IPVVFTSALEGRGRIAVMHQVID 522 (640)
Q Consensus 500 ~~~v~iSAk~g~gv~~l~~~i~~ 522 (640)
+++++|||++|.||+++|+.+.+
T Consensus 134 ~~~~e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 134 CSYYETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred CcEEEEecCCCCCHHHHHHHHHh
Confidence 68999999999999999998875
No 309
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.74 E-value=7.7e-17 Score=149.91 Aligned_cols=153 Identities=24% Similarity=0.288 Sum_probs=107.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
++|+++|.+|+|||||+|+|++.. ......++ +|.+.....+..++ ..+.+|||||+. ++.....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~ 68 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPG--TTRNYVTTVIEEDGKTYKFNLLDTAGQE----------DYRAIRR 68 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCC--ceeeeeEEEEEECCEEEEEEEEECCCcc----------cchHHHH
Confidence 589999999999999999999987 44444454 88888777777777 789999999976 2223334
Q ss_pred HHHhccceEEEEeecCCC-CChhh--HHHHHHHHHhCC-CCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeec
Q 006555 232 NVLAKTQFAIFMIDVRSG-LHPLD--LEVGKWLRKHAP-QIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 307 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~-~~~~~--~~~~~~L~~~~~-~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA 307 (640)
.....++.++.++|.... .+..+ ......+..... +.|+++|+||+|+.... ........+...+..+++++||
T Consensus 69 ~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~sa 146 (161)
T TIGR00231 69 LYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK--LKTHVAFLFAKLNGEPIIPLSA 146 (161)
T ss_pred HHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch--hhHHHHHHHhhccCCceEEeec
Confidence 456667777777777654 22222 122223333222 78999999999997643 1223334445555557899999
Q ss_pred cCCCChhHHHHHhc
Q 006555 308 ETGLGMTELYEALR 321 (640)
Q Consensus 308 ~~g~gi~eL~~~I~ 321 (640)
++|.|+.++++.|.
T Consensus 147 ~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 147 ETGKNIDSAFKIVE 160 (161)
T ss_pred CCCCCHHHHHHHhh
Confidence 99999999998764
No 310
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.74 E-value=3e-17 Score=156.49 Aligned_cols=148 Identities=23% Similarity=0.216 Sum_probs=100.6
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|||||||+|++++... .....+..+.+.....+.+.+. .+.+|||||+.... .....+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~~~ 69 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ----------SLGVAF 69 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH----------hHHHHH
Confidence 4899999999999999999997642 2223333344444455566665 45699999964321 223457
Q ss_pred HhhccEEEEEecccHHH-----------HH-------HcCCcEEEEEeCCCCCCCcc-chHHHHHHHHHcHHHHHhhCCC
Q 006555 436 LMRAHVVALVLDAEEVR-----------AV-------EEGRGLVVIVNKMDLLSGRQ-NSALYKRVKEAVPQEIQTVIPQ 496 (640)
Q Consensus 436 i~~advvllVvDa~~~~-----------~~-------~~~~p~Ilv~NK~Dl~~~~~-~~~~~~~~~~~v~~~~~~~~~~ 496 (640)
++.+|++|+|+|+++.. .. ..++|+++|+||+|+..... ..+..+.+. ..
T Consensus 70 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----------~~ 138 (172)
T cd01862 70 YRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWC-----------QS 138 (172)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHH-----------HH
Confidence 78899999999998651 01 12789999999999974321 111111111 11
Q ss_pred CCCCcEEEeccccCCCHHHHHHHHHHHHHHH
Q 006555 497 VTGIPVVFTSALEGRGRIAVMHQVIDTYQKW 527 (640)
Q Consensus 497 ~~~~~~v~iSAk~g~gv~~l~~~i~~~~~~~ 527 (640)
....+++++||++|.|++++++.+.+...+.
T Consensus 139 ~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 139 NGNIPYFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 2236899999999999999999998776543
No 311
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.74 E-value=6.3e-18 Score=170.86 Aligned_cols=152 Identities=24% Similarity=0.300 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhccceEEEEeecCCCC-ChhhHHHHHHHHHh-CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCc
Q 006555 225 RTAGMTANVLAKTQFAIFMIDVRSGL-HPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDP 302 (640)
Q Consensus 225 ~~~~~~~~~~~~ad~vl~VvD~s~~~-~~~~~~~~~~L~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~ 302 (640)
++..+...+++++|.+++|+|++++. +... +.+|+... ..++|+++|+||+|+..+.... .+....+...|+ ++
T Consensus 25 R~~~L~r~~~~n~D~viiV~d~~~p~~s~~~--l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~-~~~~~~~~~~g~-~v 100 (245)
T TIGR00157 25 RKNELTRPIVANIDQIVIVSSAVLPELSLNQ--LDRFLVVAEAQNIEPIIVLNKIDLLDDEDME-KEQLDIYRNIGY-QV 100 (245)
T ss_pred ccceEECcccccCCEEEEEEECCCCCCCHHH--HHHHHHHHHHCCCCEEEEEECcccCCCHHHH-HHHHHHHHHCCC-eE
Confidence 44455556899999999999999765 4443 34444321 2478999999999997543321 123344556676 78
Q ss_pred EEeeccCCCChhHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEeCCCCchHHHHHHHhcCCc
Q 006555 303 IAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDR 382 (640)
Q Consensus 303 i~iSA~~g~gi~eL~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKStL~n~l~~~~~ 382 (640)
+++||++|.|+++|++.+.+ -.++++|.+|||||||+|+|++...
T Consensus 101 ~~~SAktg~gi~eLf~~l~~-----------------------------------~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 101 LMTSSKNQDGLKELIEALQN-----------------------------------RISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred EEEecCCchhHHHHHhhhcC-----------------------------------CEEEEECCCCCCHHHHHHHHhhhhh
Confidence 99999999999999986542 1578999999999999999998766
Q ss_pred eeecCcc-------cceeeeEEEEEEECCeEEEEEEeCCCCccc
Q 006555 383 VLVGPEA-------GLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 419 (640)
Q Consensus 383 ~~~~~~~-------gtT~d~~~~~~~~~~~~~~liDTpG~~~~~ 419 (640)
..+++.+ +||++.....+ .+ ..|+||||+....
T Consensus 146 ~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~~ 185 (245)
T TIGR00157 146 QQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEFG 185 (245)
T ss_pred ccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCccccC
Confidence 5555444 37777665544 22 3799999987663
No 312
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.74 E-value=1e-17 Score=159.53 Aligned_cols=153 Identities=19% Similarity=0.227 Sum_probs=96.5
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|||||||+++|++... ...+.++..+........++. .+.+|||||+.+... .....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~----------~~~~~ 68 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF--PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR----------LRPLS 68 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc----------cchhh
Confidence 5899999999999999999997753 222333334444444444443 688999999764421 01134
Q ss_pred HhhccEEEEEecccHH--------H------HHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCC-C
Q 006555 436 LMRAHVVALVLDAEEV--------R------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG-I 500 (640)
Q Consensus 436 i~~advvllVvDa~~~--------~------~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~ 500 (640)
++.+|++++|+|+++. . ....++|+++|+||+|+.+..............+..+....+....+ .
T Consensus 69 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 148 (171)
T cd00157 69 YPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAI 148 (171)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCe
Confidence 4689999999999874 0 11136999999999999765321100000000001111111111123 3
Q ss_pred cEEEeccccCCCHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVID 522 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~ 522 (640)
+++++||++|.|++++++.|.+
T Consensus 149 ~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 149 GYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EEEEeecCCCCCHHHHHHHHhh
Confidence 8999999999999999998865
No 313
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.74 E-value=1.2e-17 Score=163.33 Aligned_cols=154 Identities=21% Similarity=0.235 Sum_probs=96.3
Q ss_pred ceEEEEeCCCCchHHHHH-HHhcCCc---eeecCcccce--eeeEEEE--------EEECCe--EEEEEEeCCCCccccc
Q 006555 358 LQLAIVGRPNVGKSTLLN-ALLQEDR---VLVGPEAGLT--RDSVRVH--------FEYQGR--TVYLVDTAGWLQREKE 421 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n-~l~~~~~---~~~~~~~gtT--~d~~~~~--------~~~~~~--~~~liDTpG~~~~~~~ 421 (640)
+||+++|.+|||||||+. ++.+... .....+..|. .+..... ..++|. .+.||||||+.+.
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh---
Confidence 799999999999999996 5543321 1122222222 1222111 134554 6779999997431
Q ss_pred CCchhhHHHHHHHHHhhccEEEEEecccHH-------H-H---H---HcCCcEEEEEeCCCCCCCccchHH--H----H-
Q 006555 422 KGPASLSVMQSRKNLMRAHVVALVLDAEEV-------R-A---V---EEGRGLVVIVNKMDLLSGRQNSAL--Y----K- 480 (640)
Q Consensus 422 ~~~~~~~~~~~~~~i~~advvllVvDa~~~-------~-~---~---~~~~p~Ilv~NK~Dl~~~~~~~~~--~----~- 480 (640)
. ...++++||++|+|+|+++. . + . ..+.|+|+|+||+||.+....... . .
T Consensus 80 --------~-~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~ 150 (195)
T cd01873 80 --------D-RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARP 150 (195)
T ss_pred --------h-hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccc
Confidence 0 12367799999999999876 0 1 1 136899999999998642100000 0 0
Q ss_pred -HHHHHcHHHHHhhCCCCCCCcEEEeccccCCCHHHHHHHHHHH
Q 006555 481 -RVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 481 -~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
.-.+.+..+.++.++...+++++++||++|.||+++|+.++++
T Consensus 151 ~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 151 IKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 0012333444444555557799999999999999999998763
No 314
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.74 E-value=4.1e-17 Score=174.08 Aligned_cols=206 Identities=20% Similarity=0.268 Sum_probs=133.3
Q ss_pred HHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHH----HHHHhcCCC
Q 006555 225 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAA----AESLMLGFG 300 (640)
Q Consensus 225 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~----~~~~~~g~~ 300 (640)
++..+...+...++++++|+|+.+.......++.+. ..++|+++|+||+|+...... ..... ..+...|+.
T Consensus 52 ~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~----~~~~piilV~NK~DLl~k~~~-~~~~~~~l~~~~k~~g~~ 126 (360)
T TIGR03597 52 DFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRF----VGGNPVLLVGNKIDLLPKSVN-LSKIKEWMKKRAKELGLK 126 (360)
T ss_pred HHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHH----hCCCCEEEEEEchhhCCCCCC-HHHHHHHHHHHHHHcCCC
Confidence 455666677789999999999976554333333333 236899999999999764321 11111 234556653
Q ss_pred --CcEEeeccCCCChhHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEeCCCCchHHHHHHHh
Q 006555 301 --DPIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALL 378 (640)
Q Consensus 301 --~~i~iSA~~g~gi~eL~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKStL~n~l~ 378 (640)
.++++||++|.|++++++.|.+... ..+++++|.+|||||||+|+|+
T Consensus 127 ~~~i~~vSAk~g~gv~eL~~~l~~~~~-------------------------------~~~v~~vG~~nvGKStliN~l~ 175 (360)
T TIGR03597 127 PVDIILVSAKKGNGIDELLDKIKKARN-------------------------------KKDVYVVGVTNVGKSSLINKLL 175 (360)
T ss_pred cCcEEEecCCCCCCHHHHHHHHHHHhC-------------------------------CCeEEEECCCCCCHHHHHHHHH
Confidence 5899999999999999998754210 1379999999999999999999
Q ss_pred cCC-----ceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHH---hhccEEEEEecccH
Q 006555 379 QED-----RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL---MRAHVVALVLDAEE 450 (640)
Q Consensus 379 ~~~-----~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i---~~advvllVvDa~~ 450 (640)
+.. ...+++.||||++..... . +..+.++||||+.....-. ..+. ....+.+ .......+.+|..+
T Consensus 176 ~~~~~~~~~~~~s~~pgtT~~~~~~~--~-~~~~~l~DtPG~~~~~~~~--~~l~-~~~l~~~~~~~~i~~~~~~l~~~q 249 (360)
T TIGR03597 176 KQNNGDKDVITTSPFPGTTLDLIEIP--L-DDGHSLYDTPGIINSHQMA--HYLD-KKDLKYITPKKEIKPKTYQLNPNQ 249 (360)
T ss_pred hhccCCcceeeecCCCCeEeeEEEEE--e-CCCCEEEECCCCCChhHhh--hhcC-HHHHhhcCCCCccCceEEEeCCCC
Confidence 753 357889999999876543 3 2346799999987542100 0010 1111222 12456666666554
Q ss_pred H---------HHH-HcCCcEEEEEeCCCCCCC
Q 006555 451 V---------RAV-EEGRGLVVIVNKMDLLSG 472 (640)
Q Consensus 451 ~---------~~~-~~~~p~Ilv~NK~Dl~~~ 472 (640)
. ... .....+.+.++|.+..+.
T Consensus 250 ~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~ 281 (360)
T TIGR03597 250 TLFLGGLARFDYLKGEKTSFTFYVSNELNIHR 281 (360)
T ss_pred EEEEceEEEEEEecCCceEEEEEccCCceeEe
Confidence 3 111 134456777777776554
No 315
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.74 E-value=4.2e-17 Score=183.09 Aligned_cols=153 Identities=23% Similarity=0.291 Sum_probs=116.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCe-eEEEEeCCCCccccCccchHHHHHHHH
Q 006555 152 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL-RFKVLDSAGLETEATSGSILDRTAGMT 230 (640)
Q Consensus 152 ~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~ 230 (640)
..|+|+++|++|+|||||+++|.+.+++. ...+| +|.+.....+.+.+. ++.+|||||+. ++..+.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~-~e~~G--IT~~ig~~~v~~~~~~~i~~iDTPGhe----------~F~~~r 152 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQ-GEAGG--ITQHIGAYHVENEDGKMITFLDTPGHE----------AFTSMR 152 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccc-ccCCc--eeecceEEEEEECCCcEEEEEECCCCc----------chhhHH
Confidence 35799999999999999999999876543 23344 888887777777554 89999999998 444555
Q ss_pred HHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCC--------CCc
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF--------GDP 302 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~--------~~~ 302 (640)
...+..+|++++|+|++++..+...+.+..++.. ++|+++++||+|+..... ......+...++ .++
T Consensus 153 ~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~--~vPiIVviNKiDl~~~~~---e~v~~~L~~~g~~~~~~~~~~~~ 227 (587)
T TIGR00487 153 ARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAA--NVPIIVAINKIDKPEANP---DRVKQELSEYGLVPEDWGGDTIF 227 (587)
T ss_pred HhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHc--CCCEEEEEECcccccCCH---HHHHHHHHHhhhhHHhcCCCceE
Confidence 6778999999999999998877777666666554 789999999999865321 222222222221 257
Q ss_pred EEeeccCCCChhHHHHHhcc
Q 006555 303 IAISAETGLGMTELYEALRP 322 (640)
Q Consensus 303 i~iSA~~g~gi~eL~~~I~~ 322 (640)
+++||++|.|+++|++.|..
T Consensus 228 v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 228 VPVSALTGDGIDELLDMILL 247 (587)
T ss_pred EEEECCCCCChHHHHHhhhh
Confidence 99999999999999998863
No 316
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.74 E-value=2.2e-17 Score=164.86 Aligned_cols=144 Identities=17% Similarity=0.183 Sum_probs=96.2
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccce-eeeEEEEEEECC--eEEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLT-RDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT-~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
+||+++|.+|||||||++++++.... ...+..+. .+.....+.+++ ..+.+|||||+... . ...
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~-----------~-~~~ 67 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW-----------T-EDS 67 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH-----------H-HhH
Confidence 48999999999999999999865432 12222221 144444555544 46789999996410 0 112
Q ss_pred HHh-hccEEEEEecccHH-------H----HHH----cCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCC
Q 006555 435 NLM-RAHVVALVLDAEEV-------R----AVE----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 498 (640)
Q Consensus 435 ~i~-~advvllVvDa~~~-------~----~~~----~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 498 (640)
++. .+|++++|||+++. . ... .++|+|+|+||+|+.+..... .+....++...
T Consensus 68 ~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~-----------~~~~~~~a~~~ 136 (221)
T cd04148 68 CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVS-----------VQEGRACAVVF 136 (221)
T ss_pred HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceec-----------HHHHHHHHHHc
Confidence 344 89999999999976 1 111 368999999999997643211 11111111122
Q ss_pred CCcEEEeccccCCCHHHHHHHHHHHHH
Q 006555 499 GIPVVFTSALEGRGRIAVMHQVIDTYQ 525 (640)
Q Consensus 499 ~~~~v~iSAk~g~gv~~l~~~i~~~~~ 525 (640)
+++++++||++|.|++++|+.+.+.+.
T Consensus 137 ~~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 137 DCKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 568999999999999999999987764
No 317
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.74 E-value=3.3e-17 Score=158.13 Aligned_cols=149 Identities=22% Similarity=0.242 Sum_probs=97.6
Q ss_pred cCCceEEEEeCCCCchHHHHHHHhcCC-ceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCC-chhhHHHHH
Q 006555 355 KLPLQLAIVGRPNVGKSTLLNALLQED-RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKG-PASLSVMQS 432 (640)
Q Consensus 355 ~~~~kv~ivG~~nvGKStL~n~l~~~~-~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~-~~~~~~~~~ 432 (640)
....+|+++|.+|+|||||+|+|++.. ...+++.+|+|.+..... .+ ..+.+|||||+........ .+.+... .
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~~-~~~~liDtpG~~~~~~~~~~~~~~~~~-~ 91 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE--VN-DGFRLVDLPGYGYAKVSKEEKEKWQKL-I 91 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEE--eC-CcEEEEeCCCCccccCChhHHHHHHHH-H
Confidence 346799999999999999999999875 456778889988765433 23 3799999999754321111 1111111 1
Q ss_pred HHHHh---hccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCC
Q 006555 433 RKNLM---RAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 499 (640)
Q Consensus 433 ~~~i~---~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 499 (640)
..+++ .+|++++|+|+++. .....++|+++|+||+|+....+.....+. +...+... ...
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~----i~~~l~~~---~~~ 164 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKK----IKKALKKD---ADD 164 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHH----HHHHHhhc---cCC
Confidence 12333 46899999999874 222357899999999999754322222222 22222221 123
Q ss_pred CcEEEeccccCCCHH
Q 006555 500 IPVVFTSALEGRGRI 514 (640)
Q Consensus 500 ~~~v~iSAk~g~gv~ 514 (640)
.+++++||++|+|++
T Consensus 165 ~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 165 PSVQLFSSLKKTGID 179 (179)
T ss_pred CceEEEECCCCCCCC
Confidence 589999999999973
No 318
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.74 E-value=1.6e-17 Score=155.22 Aligned_cols=142 Identities=21% Similarity=0.226 Sum_probs=96.7
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEEC--CeEEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ--GRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|+|||||+|++++...... ..+.++.+.....+..+ ...+.+|||||+.... ......
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----------~~~~~~ 69 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFR----------SITPSY 69 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChHHHH----------HHHHHH
Confidence 4899999999999999999997754332 23333344444444443 3578899999964321 234567
Q ss_pred HhhccEEEEEecccHH-----------HHHH---cCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 436 LMRAHVVALVLDAEEV-----------RAVE---EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 436 i~~advvllVvDa~~~-----------~~~~---~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
++++|++++|+|+++. .... .+.|+++++||+|+...... ..+.+.+ +. .....+
T Consensus 70 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~-----~~----~~~~~~ 138 (159)
T cd00154 70 YRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQV--STEEAQQ-----FA----KENGLL 138 (159)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccc--cHHHHHH-----HH----HHcCCe
Confidence 7889999999999875 1111 35899999999999622111 1111111 11 113578
Q ss_pred EEEeccccCCCHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVI 521 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~ 521 (640)
++++||++|.|++++++.+.
T Consensus 139 ~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 139 FFETSAKTGENVEELFQSLA 158 (159)
T ss_pred EEEEecCCCCCHHHHHHHHh
Confidence 99999999999999998875
No 319
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.74 E-value=3e-17 Score=154.58 Aligned_cols=144 Identities=21% Similarity=0.230 Sum_probs=96.6
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|||||||+|+|++.... ....+.++.+.....+.+.+. .+.+|||||..... .....+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~~~ 69 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFN-EKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYH----------ALGPIY 69 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHH----------HhhHHH
Confidence 48999999999999999999976432 222333334444444555554 57899999953321 122345
Q ss_pred HhhccEEEEEecccHHH----------H----HHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 436 LMRAHVVALVLDAEEVR----------A----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 436 i~~advvllVvDa~~~~----------~----~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
+..+|++++|+|+++.. . ...++|+++|+||+|+........ +... +.. ...+.+
T Consensus 70 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~--~~~~-----~~~----~~~~~~ 138 (162)
T cd04123 70 YRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSK--SEAE-----EYA----KSVGAK 138 (162)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCH--HHHH-----HHH----HHcCCE
Confidence 67899999999998761 0 112689999999999975432111 1110 011 112567
Q ss_pred EEEeccccCCCHHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
++++||++|.|++++++++.+.
T Consensus 139 ~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 139 HFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred EEEEeCCCCCCHHHHHHHHHHH
Confidence 8999999999999999998764
No 320
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.73 E-value=3.1e-17 Score=161.00 Aligned_cols=146 Identities=21% Similarity=0.266 Sum_probs=99.7
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECC--eEEEEEEeCCCCcccccCCchhhHHHHHHHHH
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 436 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 436 (640)
||+++|.+|||||||++++++... ...+..++.+.....+.+++ ..+.||||||..+.. .+ ...++
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---------~~-~~~~~ 68 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF--EPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFP---------AM-RKLSI 68 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchhhheeEEEEECCEEEEEEEEECCCchhhh---------HH-HHHHh
Confidence 689999999999999999997643 23344444444445566677 467899999965431 11 22467
Q ss_pred hhccEEEEEecccHH-----------HHH----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 437 MRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 437 ~~advvllVvDa~~~-----------~~~----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
..+|++|+|+|+++. ... ..++|+|+|+||+|+......... +.. .+......+.+
T Consensus 69 ~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~-~~~--------~~~~~~~~~~~ 139 (198)
T cd04147 69 QNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPA-KDA--------LSTVELDWNCG 139 (198)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccH-HHH--------HHHHHhhcCCc
Confidence 789999999999875 111 147899999999999753111100 000 00011112468
Q ss_pred EEEeccccCCCHHHHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVIDTYQ 525 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~~~~ 525 (640)
++++||++|.|++++|+++.+.+.
T Consensus 140 ~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 140 FVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred EEEecCCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999987653
No 321
>PRK12289 GTPase RsgA; Reviewed
Probab=99.73 E-value=1.8e-17 Score=174.95 Aligned_cols=148 Identities=24% Similarity=0.383 Sum_probs=109.1
Q ss_pred HHHHHhccceEEEEeecCCCCChhhHHHHHHHHHh-CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeecc
Q 006555 230 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 230 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~ 308 (640)
...++.++|.+++|+|+.++. .....+.++|... ..++|+++|+||+|+..+.. .......+...|+ .++++||+
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~-~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~-~v~~iSA~ 158 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPP-LDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGY-QPLFISVE 158 (352)
T ss_pred echhhhcCCEEEEEEECCCCC-CCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHH--HHHHHHHHHhcCC-eEEEEEcC
Confidence 345689999999999998653 2222344555432 34789999999999975321 2223344556787 78999999
Q ss_pred CCCChhHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEeCCCCchHHHHHHHhcCCceeecCc
Q 006555 309 TGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPE 388 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~ 388 (640)
+|.|+++|++.+... .++++|.+|||||||+|+|++.....++..
T Consensus 159 tg~GI~eL~~~L~~k-----------------------------------i~v~iG~SgVGKSSLIN~L~~~~~~~t~~v 203 (352)
T PRK12289 159 TGIGLEALLEQLRNK-----------------------------------ITVVAGPSGVGKSSLINRLIPDVELRVGKV 203 (352)
T ss_pred CCCCHHHHhhhhccc-----------------------------------eEEEEeCCCCCHHHHHHHHcCccccccccc
Confidence 999999988876421 379999999999999999999888888888
Q ss_pred cc-------ceeeeEEEEEEECCeEEEEEEeCCCCccc
Q 006555 389 AG-------LTRDSVRVHFEYQGRTVYLVDTAGWLQRE 419 (640)
Q Consensus 389 ~g-------tT~d~~~~~~~~~~~~~~liDTpG~~~~~ 419 (640)
++ ||++.....+. +| ..|+||||+..+.
T Consensus 204 s~~~~rGrHTT~~~~l~~l~-~g--~~liDTPG~~~~~ 238 (352)
T PRK12289 204 SGKLGRGRHTTRHVELFELP-NG--GLLADTPGFNQPD 238 (352)
T ss_pred cCCCCCCCCcCceeEEEECC-CC--cEEEeCCCccccc
Confidence 87 88876443332 22 2799999997764
No 322
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.73 E-value=1.7e-17 Score=158.47 Aligned_cols=158 Identities=22% Similarity=0.284 Sum_probs=95.2
Q ss_pred ceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCChhHHH
Q 006555 238 QFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELY 317 (640)
Q Consensus 238 d~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~gi~eL~ 317 (640)
|+|++|+|++.+.+..+.++.+.+.-...++|+|+|+||+|+.+... .......+... ...+...|+.. .+...+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~--l~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~ 76 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKEN--VEKWLKYLRRE-FPTVAFKASTQ-SQKKNLG 76 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHH--HHHHHHHHHhh-CCEEEEEeccc-ccccchh
Confidence 78999999999888887777777421123689999999999975322 22233333333 21222333322 1111110
Q ss_pred H----------Hhcc----chHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEeCCCCchHHHHHHHhcCCce
Q 006555 318 E----------ALRP----SVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRV 383 (640)
Q Consensus 318 ~----------~I~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKStL~n~l~~~~~~ 383 (640)
. .+.. .-.+.+.+.+... .........++++++|.||||||||+|+|++....
T Consensus 77 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-------------~~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~ 143 (172)
T cd04178 77 QKSVKVEAASADLLRSSVCFGADCLLKLLKNY-------------SRNKDIKTSITVGVVGFPNVGKSSLINSLKRSRAC 143 (172)
T ss_pred hcccccchhhhhhhhhccccCHHHHHHHHHHH-------------hhccccccCcEEEEEcCCCCCHHHHHHHHhCcccc
Confidence 0 0000 0000000000000 00001123589999999999999999999998888
Q ss_pred eecCcccceeeeEEEEEEECCeEEEEEEeCCC
Q 006555 384 LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGW 415 (640)
Q Consensus 384 ~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~ 415 (640)
.+++.||+|++.....+ +..+.++||||+
T Consensus 144 ~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 144 NVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred eecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 99999999998765543 346899999995
No 323
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.73 E-value=3e-17 Score=158.18 Aligned_cols=148 Identities=24% Similarity=0.285 Sum_probs=100.1
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
.||+++|.+|||||||++++++... ...+.+++.+.....+.+++. .+.+|||||+.+. . .....+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~-~~~~~~ 69 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF--VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEY---------S-ILPQKY 69 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--ccccCcchhhhEEEEEEECCEEEEEEEEECCChHhh---------H-HHHHHH
Confidence 4899999999999999999997642 333444444433445556654 4679999996432 1 122346
Q ss_pred HhhccEEEEEecccHH-----------HHH----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 436 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 436 i~~advvllVvDa~~~-----------~~~----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
+..+|++++|+|+++. ... ..+.|+|+|+||+|+...+.... +.. + .+.+ ..+.
T Consensus 70 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~--~~~-~----~~~~----~~~~ 138 (180)
T cd04137 70 SIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVST--EEG-K----ELAE----SWGA 138 (180)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCH--HHH-H----HHHH----HcCC
Confidence 6689999999999875 111 13679999999999875322111 000 1 1111 1236
Q ss_pred cEEEeccccCCCHHHHHHHHHHHHHHHh
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDTYQKWC 528 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~~~~~~ 528 (640)
+++++||++|.|+.+++.++.+.+.+..
T Consensus 139 ~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 139 AFLESSARENENVEEAFELLIEEIEKVE 166 (180)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 8999999999999999999988765443
No 324
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.73 E-value=1.1e-16 Score=152.96 Aligned_cols=149 Identities=19% Similarity=0.228 Sum_probs=102.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
.++|+++|.+|||||||+++|.+........+. ......+...+..+.+|||||.. ++......
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~------g~~~~~i~~~~~~~~~~D~~G~~----------~~~~~~~~ 77 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQ------GFNIKTVQSDGFKLNVWDIGGQR----------AIRPYWRN 77 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCC------CcceEEEEECCEEEEEEECCCCH----------HHHHHHHH
Confidence 468999999999999999999987543322222 22334556678899999999986 44455566
Q ss_pred HHhccceEEEEeecCCCCChhh--HHHHHHHHH-hCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCC-------Cc
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRK-HAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFG-------DP 302 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~--~~~~~~L~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~-------~~ 302 (640)
+++.+|++++|+|+++..+..+ ..+...+.. ...++|+++++||+|+..... ..+. ...++.. .+
T Consensus 78 ~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~i---~~~l~~~~~~~~~~~~ 152 (173)
T cd04155 78 YFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEEI---AEALNLHDLRDRTWHI 152 (173)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHHH---HHHcCCcccCCCeEEE
Confidence 7899999999999987543332 112122221 123689999999999865432 1111 1222321 35
Q ss_pred EEeeccCCCChhHHHHHhcc
Q 006555 303 IAISAETGLGMTELYEALRP 322 (640)
Q Consensus 303 i~iSA~~g~gi~eL~~~I~~ 322 (640)
+++||++|.|+++++++|++
T Consensus 153 ~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 153 QACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EEeECCCCCCHHHHHHHHhc
Confidence 79999999999999999864
No 325
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.73 E-value=3.7e-17 Score=159.04 Aligned_cols=149 Identities=16% Similarity=0.207 Sum_probs=99.8
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 436 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 436 (640)
..+|+++|++|||||||++++.+.....+.+ |.......+.+++..+.+|||||..+.. ..+..++
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~----T~~~~~~~i~~~~~~~~l~D~~G~~~~~----------~~~~~~~ 84 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHVP----TLHPTSEELTIGNIKFKTFDLGGHEQAR----------RLWKDYF 84 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcccCC----ccCcceEEEEECCEEEEEEECCCCHHHH----------HHHHHHh
Confidence 5799999999999999999999765432222 2233345667788999999999964321 2234677
Q ss_pred hhccEEEEEecccHH-----------HHH----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHH-H-H----hh-C
Q 006555 437 MRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQE-I-Q----TV-I 494 (640)
Q Consensus 437 ~~advvllVvDa~~~-----------~~~----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~-~-~----~~-~ 494 (640)
+.+|++++|+|+++. ... ..+.|+++++||+|+.......+ +...+... . . .. -
T Consensus 85 ~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 160 (190)
T cd00879 85 PEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEE----LRQALGLYGTTTGKGVSLKV 160 (190)
T ss_pred ccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHH----HHHHhCcccccccccccccc
Confidence 899999999999874 111 14689999999999865322211 11111000 0 0 00 0
Q ss_pred CCCCCCcEEEeccccCCCHHHHHHHHHHH
Q 006555 495 PQVTGIPVVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 495 ~~~~~~~~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
......+++++||++|+|++++|+++.+.
T Consensus 161 ~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 161 SGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 01123568999999999999999998753
No 326
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.73 E-value=3e-17 Score=156.26 Aligned_cols=147 Identities=19% Similarity=0.220 Sum_probs=95.8
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEE--CCeEEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY--QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|++|||||||+++|.+.... ..++.+..+ ......+ .+.++.+|||||..+.. .....+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~ 67 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRVLPE-ITIPADVTPERVPTTIVDTSSRPQDR----------ANLAAE 67 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--ccCCCcccc-eEeeeeecCCeEEEEEEeCCCchhhh----------HHHhhh
Confidence 48999999999999999999976532 223332222 2222233 34578899999964321 123345
Q ss_pred HhhccEEEEEecccHH----H----H---H---HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 436 LMRAHVVALVLDAEEV----R----A---V---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 436 i~~advvllVvDa~~~----~----~---~---~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
+..+|++++|+|++++ . + . ..+.|+++|+||+|+.+........+.+ . .+...+.. ..+
T Consensus 68 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~--~~~ 140 (166)
T cd01893 68 IRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEM-L----PIMNEFRE--IET 140 (166)
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHH-H----HHHHHHhc--ccE
Confidence 6789999999999875 1 1 1 2368999999999997653311111111 0 11111111 137
Q ss_pred EEEeccccCCCHHHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
++++||++|.|++++|+.+.+..
T Consensus 141 ~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 141 CVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred EEEeccccccCHHHHHHHHHHHh
Confidence 99999999999999999887754
No 327
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.73 E-value=1.2e-17 Score=165.22 Aligned_cols=144 Identities=25% Similarity=0.317 Sum_probs=99.2
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeec------------------------------CcccceeeeEEEEEEECCeEEE
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVG------------------------------PEAGLTRDSVRVHFEYQGRTVY 408 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~------------------------------~~~gtT~d~~~~~~~~~~~~~~ 408 (640)
+|+++|++|+|||||+++|++....+.+ ...|+|++.....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999876544331 1268899998888889999999
Q ss_pred EEEeCCCCcccccCCchhhHHHHHHHHHhhccEEEEEecccHH---------H-HHHcCC-cEEEEEeCCCCCCCccchH
Q 006555 409 LVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV---------R-AVEEGR-GLVVIVNKMDLLSGRQNSA 477 (640)
Q Consensus 409 liDTpG~~~~~~~~~~~~~~~~~~~~~i~~advvllVvDa~~~---------~-~~~~~~-p~Ilv~NK~Dl~~~~~~~~ 477 (640)
||||||+.++. .....++..+|++|+|+|++++ . ....+. ++|+|+||+|+.... ..
T Consensus 81 liDTpG~~~~~----------~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~--~~ 148 (208)
T cd04166 81 IADTPGHEQYT----------RNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYS--EE 148 (208)
T ss_pred EEECCcHHHHH----------HHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCC--HH
Confidence 99999964321 1234567889999999999864 1 112343 578899999987532 11
Q ss_pred HHHHHHHHcHHHHHhhCCCCCCCcEEEeccccCCCHHHH
Q 006555 478 LYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAV 516 (640)
Q Consensus 478 ~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g~gv~~l 516 (640)
.++.+.+.+.. +...+. ....+++++||++|.|+.+.
T Consensus 149 ~~~~i~~~~~~-~~~~~~-~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 149 VFEEIVADYLA-FAAKLG-IEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHH-HHHHcC-CCCceEEEEeCCCCCCCccC
Confidence 22222222221 111221 12357999999999998754
No 328
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.73 E-value=4.7e-17 Score=158.16 Aligned_cols=156 Identities=15% Similarity=0.159 Sum_probs=107.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
+|+|+|.+|||||||+++|....... .... +..+.....+...+ ..+.+|||||+.... .....
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~----------~~~~~ 68 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPE--EYHP--TVFENYVTDCRVDGKPVQLALWDTAGQEEYE----------RLRPL 68 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc--ccCC--cccceEEEEEEECCEEEEEEEEECCCChhcc----------ccchh
Confidence 89999999999999999998554321 1111 33333334445555 458899999987321 12223
Q ss_pred HHhccceEEEEeecCCCCChhhH--HHHHHHHHhCCCCcEEEEecCCCCCcCC----------ccchHHHHHHHHhcCCC
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNG----------TGSLAGAAAESLMLGFG 300 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~L~~~~~~~p~ilV~NK~Dl~~~~----------~~~~~~~~~~~~~~g~~ 300 (640)
.+..+|++++++|+++..+..+. .+...++...++.|+++|+||+|+.... .....+........+..
T Consensus 69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (187)
T cd04129 69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAK 148 (187)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCc
Confidence 56899999999999876655543 2455555555689999999999985421 12223344445666665
Q ss_pred CcEEeeccCCCChhHHHHHhccch
Q 006555 301 DPIAISAETGLGMTELYEALRPSV 324 (640)
Q Consensus 301 ~~i~iSA~~g~gi~eL~~~I~~~l 324 (640)
.++++||++|.|++++++.+.+.+
T Consensus 149 ~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 149 KYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred EEEEccCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999988654
No 329
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.73 E-value=6.2e-17 Score=156.94 Aligned_cols=148 Identities=16% Similarity=0.150 Sum_probs=100.0
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 436 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 436 (640)
.++|+++|.+|||||||++++.+.....+.+ |.......+.+++.++.+|||||+.+.. .....++
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~~~~----------~~~~~~~ 82 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQP----TQHPTSEELAIGNIKFTTFDLGGHQQAR----------RLWKDYF 82 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccCC----ccccceEEEEECCEEEEEEECCCCHHHH----------HHHHHHh
Confidence 4799999999999999999999865333322 2333334556788899999999964321 2234677
Q ss_pred hhccEEEEEecccHH-----------HHH----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHH-HhhC--CCCC
Q 006555 437 MRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEI-QTVI--PQVT 498 (640)
Q Consensus 437 ~~advvllVvDa~~~-----------~~~----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~-~~~~--~~~~ 498 (640)
..+|++++|+|+++. ... ..++|+++|+||+|+.......++ .+.+.... .... ....
T Consensus 83 ~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i----~~~l~l~~~~~~~~~~~~~ 158 (184)
T smart00178 83 PEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDEL----RYALGLTNTTGSKGKVGVR 158 (184)
T ss_pred CCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHH----HHHcCCCcccccccccCCc
Confidence 899999999999875 111 147899999999998654322222 11111000 0000 0112
Q ss_pred CCcEEEeccccCCCHHHHHHHHHH
Q 006555 499 GIPVVFTSALEGRGRIAVMHQVID 522 (640)
Q Consensus 499 ~~~~v~iSAk~g~gv~~l~~~i~~ 522 (640)
...++++||++|.|++++++++..
T Consensus 159 ~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 159 PLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred eeEEEEeecccCCChHHHHHHHHh
Confidence 346999999999999999999865
No 330
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.73 E-value=5.7e-17 Score=155.05 Aligned_cols=144 Identities=22% Similarity=0.277 Sum_probs=98.9
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 436 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 436 (640)
.++|+++|++|||||||++++.+.......++.|.+. ..+..++..+.+|||||..+.. .....++
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~----~~i~~~~~~~~~~D~~G~~~~~----------~~~~~~~ 79 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGFNI----KTVQSDGFKLNVWDIGGQRAIR----------PYWRNYF 79 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcce----EEEEECCEEEEEEECCCCHHHH----------HHHHHHh
Confidence 5899999999999999999999875444444445433 2455678899999999964321 2234567
Q ss_pred hhccEEEEEecccHH-----------HH----HHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 437 MRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 437 ~~advvllVvDa~~~-----------~~----~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
+.+|++++|+|+++. .. ...++|+++++||+|+.......+. .+.+. +.. + .....+
T Consensus 80 ~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i----~~~l~--~~~-~-~~~~~~ 151 (173)
T cd04155 80 ENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEI----AEALN--LHD-L-RDRTWH 151 (173)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHH----HHHcC--Ccc-c-CCCeEE
Confidence 789999999999864 01 1246899999999998764322111 11110 000 0 111235
Q ss_pred EEEeccccCCCHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVID 522 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~ 522 (640)
++++||++|+|++++|++|.+
T Consensus 152 ~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 152 IQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EEEeECCCCCCHHHHHHHHhc
Confidence 789999999999999999864
No 331
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.73 E-value=7e-17 Score=157.67 Aligned_cols=147 Identities=17% Similarity=0.114 Sum_probs=108.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCC------ceeec---------CCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccC
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRR------EALVY---------NTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEAT 218 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~------~~~v~---------~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 218 (640)
..|+++|++|+|||||+++|++.. ..... ...| +|.+........++.++.++||||+.
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg--~Ti~~~~~~~~~~~~~i~~iDtPG~~---- 76 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARG--ITINTAHVEYETANRHYAHVDCPGHA---- 76 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcC--ccEEeeeeEecCCCeEEEEEECcCHH----
Confidence 379999999999999999998631 00001 1233 77777777777788899999999987
Q ss_pred ccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCc-EEEEecCCCCCcCCccc---hHHHHHHH
Q 006555 219 SGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTGS---LAGAAAES 294 (640)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p-~ilV~NK~Dl~~~~~~~---~~~~~~~~ 294 (640)
++...+...+..+|++++|+|+..+....+.+.+..+.+. ++| +|+|+||+|+..+.... ..+....+
T Consensus 77 ------~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l 148 (195)
T cd01884 77 ------DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV--GVPYIVVFLNKADMVDDEELLELVEMEVRELL 148 (195)
T ss_pred ------HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHH
Confidence 5666677888999999999999998888888888888776 666 77999999986422111 11223334
Q ss_pred HhcCC----CCcEEeeccCCCChh
Q 006555 295 LMLGF----GDPIAISAETGLGMT 314 (640)
Q Consensus 295 ~~~g~----~~~i~iSA~~g~gi~ 314 (640)
...|+ .+++++||.+|.|+.
T Consensus 149 ~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 149 SKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred HHhcccccCCeEEEeeCccccCCC
Confidence 44555 357999999999864
No 332
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.73 E-value=2.6e-18 Score=179.76 Aligned_cols=188 Identities=16% Similarity=0.166 Sum_probs=140.2
Q ss_pred cccchhhcCCCccccccccCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCC
Q 006555 133 HKVKPLYEKPVDFTKIDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAG 212 (640)
Q Consensus 133 ~~~~~l~~~l~~~~~~~~~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG 212 (640)
....++++++.+++.++.+. ++++|||+|||||||++|.++... +..+|.+|||+....+++.+.-.+|+++||||
T Consensus 149 ~yLeqVrqhl~rlPsIDp~t-rTlllcG~PNVGKSSf~~~vtrad---vevqpYaFTTksL~vGH~dykYlrwQViDTPG 224 (620)
T KOG1490|consen 149 EYLEQVRQHLSRLPAIDPNT-RTLLVCGYPNVGKSSFNNKVTRAD---DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPG 224 (620)
T ss_pred HHHHHHHHHHhcCCCCCCCc-CeEEEecCCCCCcHhhcccccccc---cccCCcccccchhhhhhhhhheeeeeecCCcc
Confidence 56667777788888877665 499999999999999999998755 35567777999999999999999999999999
Q ss_pred CccccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhh---HHHHHHHHHhCCCCcEEEEecCCCCCcCCccchH-
Q 006555 213 LETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLD---LEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLA- 288 (640)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~---~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~- 288 (640)
+.+...++....++...+..+ +--.+|||+.|.+..+...- ..+...++..+.++|+|+|+||||.........+
T Consensus 225 ILD~plEdrN~IEmqsITALA-HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~ 303 (620)
T KOG1490|consen 225 ILDRPEEDRNIIEMQIITALA-HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKN 303 (620)
T ss_pred ccCcchhhhhHHHHHHHHHHH-HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHH
Confidence 986554443333443333222 22236899999998665443 3455566667789999999999999876654333
Q ss_pred -HHHHHHHhcCCCCcEEeeccCCCChhHHHHHhccchH
Q 006555 289 -GAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVE 325 (640)
Q Consensus 289 -~~~~~~~~~g~~~~i~iSA~~g~gi~eL~~~I~~~l~ 325 (640)
+..+.....|--.++.+|+.+.+|+.++....++.+-
T Consensus 304 ~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 304 QELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALL 341 (620)
T ss_pred HHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHH
Confidence 3344455555447899999999999999988877553
No 333
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.73 E-value=5.7e-17 Score=151.54 Aligned_cols=148 Identities=16% Similarity=0.112 Sum_probs=100.3
Q ss_pred EEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHHHh
Q 006555 156 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLA 235 (640)
Q Consensus 156 V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 235 (640)
|+++|.+|||||||+|+|++..... ...+. +. .....+..++..+.+|||||+. ++......++.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~-~~~~t--~~--~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~~~~ 66 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE-DTIPT--VG--FNMRKVTKGNVTLKVWDLGGQP----------RFRSMWERYCR 66 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc-CccCC--CC--cceEEEEECCEEEEEEECCCCH----------hHHHHHHHHHh
Confidence 8999999999999999999875432 11221 22 2223455667889999999986 45566677899
Q ss_pred ccceEEEEeecCCCCChhhHHHHHHHHHh-----CCCCcEEEEecCCCCCcCCccchHHHHHHHH--hcC--CCCcEEee
Q 006555 236 KTQFAIFMIDVRSGLHPLDLEVGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESL--MLG--FGDPIAIS 306 (640)
Q Consensus 236 ~ad~vl~VvD~s~~~~~~~~~~~~~L~~~-----~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~--~~g--~~~~i~iS 306 (640)
.+|++++|+|+++..+... ...++... ..++|+++|+||+|+.+.... ........ ... ...++++|
T Consensus 67 ~~d~ii~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S 142 (159)
T cd04159 67 GVNAIVYVVDAADRTALEA--AKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSIS 142 (159)
T ss_pred cCCEEEEEEECCCHHHHHH--HHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEE
Confidence 9999999999986443322 22222221 247899999999998764321 11111111 111 12569999
Q ss_pred ccCCCChhHHHHHhcc
Q 006555 307 AETGLGMTELYEALRP 322 (640)
Q Consensus 307 A~~g~gi~eL~~~I~~ 322 (640)
|++|.|++++++.|.+
T Consensus 143 a~~~~gi~~l~~~l~~ 158 (159)
T cd04159 143 CKEKTNIDIVLDWLIK 158 (159)
T ss_pred eccCCChHHHHHHHhh
Confidence 9999999999998864
No 334
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.73 E-value=7.8e-17 Score=157.58 Aligned_cols=145 Identities=26% Similarity=0.384 Sum_probs=98.8
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeec---------------CcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCC
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVG---------------PEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKG 423 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~---------------~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~ 423 (640)
+|+++|++|||||||+++|++....... ...|+|.+.....+.+++..+.+|||||+.++.
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~---- 79 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFG---- 79 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHH----
Confidence 7999999999999999999963211111 235777777777778888999999999975431
Q ss_pred chhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhh
Q 006555 424 PASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTV 493 (640)
Q Consensus 424 ~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~ 493 (640)
.....+++.+|++++|+|+++. .....++|+++|+||+|+.... .....+.+.+.+. .+...
T Consensus 80 ------~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~-~~~~~ 151 (194)
T cd01891 80 ------GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDAR-PEEVVDEVFDLFI-ELGAT 151 (194)
T ss_pred ------HHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHHHHH-HhCCc
Confidence 2344678899999999999873 2234689999999999997532 1122222222111 11110
Q ss_pred CCCCCCCcEEEeccccCCCHHHH
Q 006555 494 IPQVTGIPVVFTSALEGRGRIAV 516 (640)
Q Consensus 494 ~~~~~~~~~v~iSAk~g~gv~~l 516 (640)
....+.+++++||++|.|+.++
T Consensus 152 -~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 152 -EEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred -cccCccCEEEeehhcccccccc
Confidence 1123568999999999997543
No 335
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.6e-17 Score=147.02 Aligned_cols=148 Identities=19% Similarity=0.163 Sum_probs=107.3
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEEC--CeEEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ--GRTVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
.+|+.++|+..|||||++.++++.. +...-+..+.+|.....+--. ..++++|||+|+++. .. .+-.
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddS-Ft~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEry---------rt-iTTa 89 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDS-FTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERY---------RT-ITTA 89 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccc-cccceeeeeeeeEEEeEeeecccEEEEEEEecccchhh---------hH-HHHH
Confidence 4699999999999999999999764 333344445556555443322 247889999996543 22 3446
Q ss_pred HHhhccEEEEEecccHHH--------------HHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 435 NLMRAHVVALVLDAEEVR--------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 435 ~i~~advvllVvDa~~~~--------------~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
++++|+++|+++|.++.. ....+.|+|+|+||||+.+++ .++.+-...++...+.
T Consensus 90 yyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eR-----------vis~e~g~~l~~~LGf 158 (193)
T KOG0093|consen 90 YYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSER-----------VISHERGRQLADQLGF 158 (193)
T ss_pred HhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccce-----------eeeHHHHHHHHHHhCh
Confidence 889999999999999751 112578999999999997653 2223333333444477
Q ss_pred cEEEeccccCCCHHHHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
.++++|||.+.|+.++|+.+...+..
T Consensus 159 efFEtSaK~NinVk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 159 EFFETSAKENINVKQVFERLVDIICD 184 (193)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHH
Confidence 89999999999999999999887654
No 336
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.73 E-value=7.3e-17 Score=162.17 Aligned_cols=156 Identities=22% Similarity=0.270 Sum_probs=110.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 234 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 234 (640)
+|+|+|.||+|||||+|+|++.. ..+.+.++ +|.+...+.+.+++.++++|||||+........ ....+...++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~--tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~---~~~~~~l~~~ 75 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEF--TTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK---GRGRQVIAVA 75 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCC--ccccceEEEEEECCeEEEEEECCCcccccccch---hHHHHHHHhh
Confidence 79999999999999999999875 33555666 888888888889999999999999975432221 2234456789
Q ss_pred hccceEEEEeecCCCCChh------------------------------------------h-HHHHHHHHHh-------
Q 006555 235 AKTQFAIFMIDVRSGLHPL------------------------------------------D-LEVGKWLRKH------- 264 (640)
Q Consensus 235 ~~ad~vl~VvD~s~~~~~~------------------------------------------~-~~~~~~L~~~------- 264 (640)
+++|++++|+|++++.... + ..+...|++.
T Consensus 76 ~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v 155 (233)
T cd01896 76 RTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADV 155 (233)
T ss_pred ccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEE
Confidence 9999999999987543211 1 1122222221
Q ss_pred ------------------CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCChhHHHHHhccch
Q 006555 265 ------------------APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSV 324 (640)
Q Consensus 265 ------------------~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~gi~eL~~~I~~~l 324 (640)
...+|+++|+||+|+.... +.. .+.. . ..++++||++|.|++++++.|.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~-----~~~-~~~~-~-~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 156 LIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIE-----ELD-LLAR-Q-PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred EEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHH-----HHH-HHhc-C-CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 1236899999999986531 111 1211 2 2579999999999999999988754
No 337
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.73 E-value=2.9e-17 Score=151.97 Aligned_cols=133 Identities=23% Similarity=0.263 Sum_probs=86.2
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHHhh
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 438 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 438 (640)
||+++|++|||||||+|+|++.... +..+ . ...+.+ .+|||||..... .+.+. .....+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~~t-~-----~~~~~~---~~iDt~G~~~~~----~~~~~--~~~~~~~~ 62 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YKKT-Q-----AVEYND---GAIDTPGEYVEN----RRLYS--ALIVTAAD 62 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----cccc-e-----eEEEcC---eeecCchhhhhh----HHHHH--HHHHHhhc
Confidence 7999999999999999999977531 1111 1 122333 689999963110 11121 12235789
Q ss_pred ccEEEEEecccHH------HHH-HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEeccccCC
Q 006555 439 AHVVALVLDAEEV------RAV-EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGR 511 (640)
Q Consensus 439 advvllVvDa~~~------~~~-~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g~ 511 (640)
+|++++|+|++++ ... ....|+|+|+||+|+.+.....+ ... +..+. ....+++++||++|.
T Consensus 63 ad~vilv~d~~~~~s~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~---~~~-----~~~~~---~~~~~~~~~Sa~~~~ 131 (142)
T TIGR02528 63 ADVIALVQSATDPESRFPPGFASIFVKPVIGLVTKIDLAEADVDIE---RAK-----ELLET---AGAEPIFEISSVDEQ 131 (142)
T ss_pred CCEEEEEecCCCCCcCCChhHHHhccCCeEEEEEeeccCCcccCHH---HHH-----HHHHH---cCCCcEEEEecCCCC
Confidence 9999999999876 111 12569999999999975321111 111 11111 123479999999999
Q ss_pred CHHHHHHHHH
Q 006555 512 GRIAVMHQVI 521 (640)
Q Consensus 512 gv~~l~~~i~ 521 (640)
|++++|+.+.
T Consensus 132 gi~~l~~~l~ 141 (142)
T TIGR02528 132 GLEALVDYLN 141 (142)
T ss_pred CHHHHHHHHh
Confidence 9999998874
No 338
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.73 E-value=6.3e-17 Score=185.69 Aligned_cols=153 Identities=24% Similarity=0.291 Sum_probs=118.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 152 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 152 ~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
..|.|+|+|++|+|||||+++|.+.++.. ....+ +|.+.....+.+++..+.||||||+. .+..+..
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~-~e~~G--IT~~iga~~v~~~~~~ItfiDTPGhe----------~F~~m~~ 355 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAA-GEAGG--ITQHIGAYQVETNGGKITFLDTPGHE----------AFTAMRA 355 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccc-cccCc--eeeeccEEEEEECCEEEEEEECCCCc----------cchhHHH
Confidence 46899999999999999999998866532 23344 78888878888888999999999997 4445556
Q ss_pred HHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHh-------cC-CCCcE
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLM-------LG-FGDPI 303 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~-------~g-~~~~i 303 (640)
..+..+|++|+|+|++++......+.+.++... ++|+|+|+||+|+..... ......+.. +| ..+++
T Consensus 356 rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~--~vPiIVviNKiDl~~a~~---e~V~~eL~~~~~~~e~~g~~vp~v 430 (787)
T PRK05306 356 RGAQVTDIVVLVVAADDGVMPQTIEAINHAKAA--GVPIIVAINKIDKPGANP---DRVKQELSEYGLVPEEWGGDTIFV 430 (787)
T ss_pred hhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhc--CCcEEEEEECccccccCH---HHHHHHHHHhcccHHHhCCCceEE
Confidence 778899999999999998887777777666655 789999999999965321 111111111 12 12679
Q ss_pred EeeccCCCChhHHHHHhcc
Q 006555 304 AISAETGLGMTELYEALRP 322 (640)
Q Consensus 304 ~iSA~~g~gi~eL~~~I~~ 322 (640)
++||++|.|+++|++.|..
T Consensus 431 pvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 431 PVSAKTGEGIDELLEAILL 449 (787)
T ss_pred EEeCCCCCCchHHHHhhhh
Confidence 9999999999999998874
No 339
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.73 E-value=3.6e-17 Score=153.63 Aligned_cols=142 Identities=24% Similarity=0.256 Sum_probs=100.1
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECC--eEEEEEEeCCCCcccccCCchhhHHHHHHHHH
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 436 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 436 (640)
||+++|.+|||||||++++++.. ....+.+++.+.....+..++ ..+.+|||||..+. . ......+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~-~~~~~~~ 68 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEF---------S-AMRDLYI 68 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHH---------H-HHHHHHH
Confidence 68999999999999999999765 445555566666666666664 46789999996432 1 1233567
Q ss_pred hhccEEEEEecccHHH-----------HH--H--cCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 437 MRAHVVALVLDAEEVR-----------AV--E--EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 437 ~~advvllVvDa~~~~-----------~~--~--~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
..+|++++|+|.++.. .. . .+.|+++|+||+|+.+..... .+... .... ..+.+
T Consensus 69 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~-----~~~~----~~~~~ 137 (160)
T cd00876 69 RQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVS--KEEGK-----ALAK----EWGCP 137 (160)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceec--HHHHH-----HHHH----HcCCc
Confidence 7899999999998750 11 1 379999999999997632111 11111 1111 11368
Q ss_pred EEEeccccCCCHHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
++++||++|.|++++++.|.+.
T Consensus 138 ~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 138 FIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred EEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999999998753
No 340
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.72 E-value=3.9e-18 Score=152.57 Aligned_cols=160 Identities=18% Similarity=0.253 Sum_probs=124.0
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHH
Q 006555 152 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGM 229 (640)
Q Consensus 152 ~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 229 (640)
..++|+++|..-||||||+-+++..++.. ..-.+..-.+....+.+++ ..+.||||+|++ ++...
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~---kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQE----------rfHAL 78 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNC---KHLSTLQASFQNKKVNVEDCRADLHIWDTAGQE----------RFHAL 78 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcch---hhHHHHHHHHhhcccccccceeeeeeeeccchH----------hhhcc
Confidence 35899999999999999999999876532 1111111223333344444 468999999999 66667
Q ss_pred HHHHHhccceEEEEeecCCCCChhhHHHHHHHHHh----CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEe
Q 006555 230 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 305 (640)
Q Consensus 230 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~----~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~i 305 (640)
-..|++.++.+|+|+|+++..+++ .+..|+++. ...+-+++|+||+|+.+++.+...++...+...|. .++++
T Consensus 79 GPIYYRgSnGalLVyDITDrdSFq--KVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA-~y~eT 155 (218)
T KOG0088|consen 79 GPIYYRGSNGALLVYDITDRDSFQ--KVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGA-LYMET 155 (218)
T ss_pred CceEEeCCCceEEEEeccchHHHH--HHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhch-hheec
Confidence 777899999999999999988777 444554442 34677899999999999888888888888888887 78999
Q ss_pred eccCCCChhHHHHHhccchHHH
Q 006555 306 SAETGLGMTELYEALRPSVEDY 327 (640)
Q Consensus 306 SA~~g~gi~eL~~~I~~~l~~~ 327 (640)
||+.+.||.|||+.+...+-+.
T Consensus 156 SAk~N~Gi~elFe~Lt~~MiE~ 177 (218)
T KOG0088|consen 156 SAKDNVGISELFESLTAKMIEH 177 (218)
T ss_pred ccccccCHHHHHHHHHHHHHHH
Confidence 9999999999999998877654
No 341
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.72 E-value=1.3e-16 Score=155.83 Aligned_cols=156 Identities=21% Similarity=0.221 Sum_probs=103.9
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCC-ceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCccccc-CCchhhHHHHHH
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQED-RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE-KGPASLSVMQSR 433 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~-~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~ 433 (640)
..++|+++|++|+|||||+|+|++.. ...+++.+|+|++..... . +.++.||||||+...... ...+.+. ....
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~~~~~~~-~~~~ 98 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKEEKEKWQ-KLIE 98 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCchHHHHHH-HHHH
Confidence 45799999999999999999999864 466778888888754432 2 468999999997543211 1111221 1112
Q ss_pred HHHh---hccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 434 KNLM---RAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 434 ~~i~---~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
.++. ..+++++|+|+++. .....++|+++++||+|+.+..+.....+. +...+... ..
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~--------i~~~l~~~-~~ 169 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKK--------VRKALKFG-DD 169 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHH--------HHHHHHhc-CC
Confidence 2333 45789999997753 112357899999999999765322221111 11222111 46
Q ss_pred cEEEeccccCCCHHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
+++++||++|.|++++++.+.+.+
T Consensus 170 ~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 170 EVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Confidence 899999999999999999887654
No 342
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.72 E-value=5.7e-17 Score=154.63 Aligned_cols=144 Identities=22% Similarity=0.284 Sum_probs=98.7
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHHhh
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 438 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 438 (640)
+|+++|.+|||||||++++.+.....+.++.|.+ ...+.+++..+.+|||||..+.. .....++++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~----~~~~~~~~~~~~i~D~~G~~~~~----------~~~~~~~~~ 66 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFT----PTKLRLDKYEVCIFDLGGGANFR----------GIWVNYYAE 66 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccce----EEEEEECCEEEEEEECCCcHHHH----------HHHHHHHcC
Confidence 4799999999999999999976322334444443 33566788899999999964321 224578889
Q ss_pred ccEEEEEecccHH-----------HHHH----cCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCC-CCCCcE
Q 006555 439 AHVVALVLDAEEV-----------RAVE----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ-VTGIPV 502 (640)
Q Consensus 439 advvllVvDa~~~-----------~~~~----~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~ 502 (640)
+|++++|+|+++. .... .++|+++|+||+|+.+.....+..+.+ .+...... ....++
T Consensus 67 a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~------~l~~~~~~~~~~~~~ 140 (167)
T cd04161 67 AHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYL------SLEKLVNENKSLCHI 140 (167)
T ss_pred CCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhc------CcccccCCCCceEEE
Confidence 9999999999875 0111 378999999999997654332222211 01111111 123578
Q ss_pred EEeccccC------CCHHHHHHHHHH
Q 006555 503 VFTSALEG------RGRIAVMHQVID 522 (640)
Q Consensus 503 v~iSAk~g------~gv~~l~~~i~~ 522 (640)
+++||++| .|+.+.|+++.+
T Consensus 141 ~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 141 EPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EEeEceeCCCCccccCHHHHHHHHhc
Confidence 88999998 899999999864
No 343
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.72 E-value=5.6e-17 Score=155.38 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=97.6
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
.||+++|.+|||||||++++.+... ...+.++..+.....+.+++. .+.+|||||+.+... . ...+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------~-~~~~ 69 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR---------L-RPLS 69 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhh---------c-cccc
Confidence 4899999999999999999997642 223333444443445566665 567999999754321 1 1134
Q ss_pred HhhccEEEEEecccHH----H----H------HHcCCcEEEEEeCCCCCCCccchHHHHHHH-HHcHHHHHhhCC-CCCC
Q 006555 436 LMRAHVVALVLDAEEV----R----A------VEEGRGLVVIVNKMDLLSGRQNSALYKRVK-EAVPQEIQTVIP-QVTG 499 (640)
Q Consensus 436 i~~advvllVvDa~~~----~----~------~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~-~~v~~~~~~~~~-~~~~ 499 (640)
+..+|++++|+|+++. . . ...++|+++|+||+|+.+.....+...... ..+.....+.++ ....
T Consensus 70 ~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~ 149 (175)
T cd01870 70 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGA 149 (175)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCC
Confidence 5789999999999854 0 1 114789999999999875422111110000 011111111111 1223
Q ss_pred CcEEEeccccCCCHHHHHHHHHHH
Q 006555 500 IPVVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 500 ~~~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
.+++++||++|.|++++|+.+.+.
T Consensus 150 ~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 150 FGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred cEEEEeccccCcCHHHHHHHHHHH
Confidence 479999999999999999998764
No 344
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.72 E-value=9.4e-17 Score=181.09 Aligned_cols=157 Identities=20% Similarity=0.175 Sum_probs=119.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCcee--ecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREAL--VYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~--v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
.|+++|++|+|||||+|+|++..... .....| +|.+..+..+..++..+.+|||||+. ++......
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rG--iTid~~~~~~~~~~~~v~~iDtPGhe----------~f~~~~~~ 69 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRG--MTIDLGFAYFPLPDYRLGFIDVPGHE----------KFISNAIA 69 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCC--ceEEeEEEEEEeCCEEEEEEECCCHH----------HHHHHHHh
Confidence 69999999999999999999753211 112334 88888888888888999999999987 56667778
Q ss_pred HHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCc-EEEEecCCCCCcCCccc--hHHHHHHHHhcCC---CCcEEee
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTGS--LAGAAAESLMLGF---GDPIAIS 306 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p-~ilV~NK~Dl~~~~~~~--~~~~~~~~~~~g~---~~~i~iS 306 (640)
.+..+|++++|+|++++..+...+.+.++... ++| +++|+||+|+.+..... ..+....+...++ .+++++|
T Consensus 70 g~~~aD~aILVVDa~~G~~~qT~ehl~il~~l--gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vS 147 (581)
T TIGR00475 70 GGGGIDAALLVVDADEGVMTQTGEHLAVLDLL--GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTS 147 (581)
T ss_pred hhccCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEe
Confidence 88999999999999998877777766666655 677 99999999997643211 1112222333332 3689999
Q ss_pred ccCCCChhHHHHHhccchH
Q 006555 307 AETGLGMTELYEALRPSVE 325 (640)
Q Consensus 307 A~~g~gi~eL~~~I~~~l~ 325 (640)
|++|.|++++++.|...+.
T Consensus 148 A~tG~GI~eL~~~L~~l~~ 166 (581)
T TIGR00475 148 AKTGQGIGELKKELKNLLE 166 (581)
T ss_pred CCCCCCchhHHHHHHHHHH
Confidence 9999999999998876554
No 345
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.72 E-value=1e-16 Score=182.22 Aligned_cols=154 Identities=23% Similarity=0.334 Sum_probs=115.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEE----CCeeEEEEeCCCCccccCccchHHHHH
Q 006555 152 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL----GDLRFKVLDSAGLETEATSGSILDRTA 227 (640)
Q Consensus 152 ~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~ 227 (640)
..|.|+|+|++|+|||||+++|.+...+. ...+| +|.+.....+.+ .+..+.+|||||+. .+.
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~G--iTq~i~~~~v~~~~~~~~~kItfiDTPGhe----------~F~ 309 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGG--ITQKIGAYEVEFEYKDENQKIVFLDTPGHE----------AFS 309 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCc--cccccceEEEEEEecCCceEEEEEECCcHH----------HHH
Confidence 45799999999999999999999876543 22344 666554444444 35889999999987 566
Q ss_pred HHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHH-------hcC-C
Q 006555 228 GMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESL-------MLG-F 299 (640)
Q Consensus 228 ~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~-------~~g-~ 299 (640)
.+...++..+|++++|+|++++..+...+.+..+... ++|+|+|+||+|+..... ......+. .+| .
T Consensus 310 ~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~--~iPiIVViNKiDl~~~~~---e~v~~eL~~~~ll~e~~g~~ 384 (742)
T CHL00189 310 SMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAA--NVPIIVAINKIDKANANT---ERIKQQLAKYNLIPEKWGGD 384 (742)
T ss_pred HHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhc--CceEEEEEECCCccccCH---HHHHHHHHHhccchHhhCCC
Confidence 7777889999999999999998887777777776654 789999999999976321 11111211 122 2
Q ss_pred CCcEEeeccCCCChhHHHHHhccc
Q 006555 300 GDPIAISAETGLGMTELYEALRPS 323 (640)
Q Consensus 300 ~~~i~iSA~~g~gi~eL~~~I~~~ 323 (640)
.+++++||++|.|+++|++.|...
T Consensus 385 vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 385 TPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred ceEEEEECCCCCCHHHHHHhhhhh
Confidence 367999999999999999988764
No 346
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.71 E-value=2e-16 Score=147.22 Aligned_cols=159 Identities=27% Similarity=0.316 Sum_probs=112.2
Q ss_pred EEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEEC-CeeEEEEeCCCCccccCccchHHHHHHHHHHHHhc
Q 006555 158 IIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG-DLRFKVLDSAGLETEATSGSILDRTAGMTANVLAK 236 (640)
Q Consensus 158 lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 236 (640)
|+|.+|+|||||+|+|++.........++ +|.+......... +..+.+|||||+......... .......++..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~---~~~~~~~~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPG--TTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRE---REELARRVLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCC--cEECCeEEEEEecCCCcEEEEECCCCCccccchhh---HHHHHHHHHHh
Confidence 58999999999999999876654444554 6777776666655 678999999999854432211 12455667899
Q ss_pred cceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHH--HHHHHHhcCCCCcEEeeccCCCChh
Q 006555 237 TQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAG--AAAESLMLGFGDPIAISAETGLGMT 314 (640)
Q Consensus 237 ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~--~~~~~~~~g~~~~i~iSA~~g~gi~ 314 (640)
+|++++|+|++.+.......+...... .+.|+++|+||+|+.......... ...........+++++||+++.|++
T Consensus 76 ~d~il~v~~~~~~~~~~~~~~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~ 153 (163)
T cd00880 76 ADLILFVVDADLRADEEEEKLLELLRE--RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGID 153 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHH
Confidence 999999999998877766543333333 388999999999998754321111 0111122223478999999999999
Q ss_pred HHHHHhccc
Q 006555 315 ELYEALRPS 323 (640)
Q Consensus 315 eL~~~I~~~ 323 (640)
++++.+.+.
T Consensus 154 ~l~~~l~~~ 162 (163)
T cd00880 154 ELREALIEA 162 (163)
T ss_pred HHHHHHHhh
Confidence 999988753
No 347
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.71 E-value=9.3e-17 Score=151.74 Aligned_cols=145 Identities=20% Similarity=0.283 Sum_probs=102.5
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeE--EEEEEeCCCCcccccCCchhhHHHHHHHHH
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSRKNL 436 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 436 (640)
||+++|.++||||||+++|.+... .....+....+.....+..++.. +.||||+|..+. ... ....+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~---------~~~-~~~~~ 69 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF---------DSL-RDIFY 69 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGG---------HHH-HHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-ccccccccccccccccccccccccccccccccccccc---------ccc-ccccc
Confidence 799999999999999999997642 22222333367777777777764 679999996432 111 23467
Q ss_pred hhccEEEEEecccHH-------------HHHHc-CCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcE
Q 006555 437 MRAHVVALVLDAEEV-------------RAVEE-GRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 502 (640)
Q Consensus 437 ~~advvllVvDa~~~-------------~~~~~-~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 502 (640)
+++|++|+|+|.++. ..... +.|++||+||.|+.+.... ..+..+.++...+.++
T Consensus 70 ~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v-----------~~~~~~~~~~~~~~~~ 138 (162)
T PF00071_consen 70 RNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREV-----------SVEEAQEFAKELGVPY 138 (162)
T ss_dssp TTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSS-----------CHHHHHHHHHHTTSEE
T ss_pred cccccccccccccccccccccccccccccccccccccceeeeccccccccccc-----------hhhHHHHHHHHhCCEE
Confidence 789999999999886 11112 5899999999998763221 1111122222235799
Q ss_pred EEeccccCCCHHHHHHHHHHHHH
Q 006555 503 VFTSALEGRGRIAVMHQVIDTYQ 525 (640)
Q Consensus 503 v~iSAk~g~gv~~l~~~i~~~~~ 525 (640)
+++||+++.|+.++|..+++.+.
T Consensus 139 ~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 139 FEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp EEEBTTTTTTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999988654
No 348
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.71 E-value=8.8e-17 Score=152.89 Aligned_cols=143 Identities=20% Similarity=0.209 Sum_probs=96.7
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHHhh
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 438 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 438 (640)
.|+++|.+|||||||++++.+... .....|....+ ...+...+.++.+|||||..+.. ..+..++++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~-~~~~~pt~g~~--~~~i~~~~~~l~i~Dt~G~~~~~----------~~~~~~~~~ 67 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERS-LESVVPTTGFN--SVAIPTQDAIMELLEIGGSQNLR----------KYWKRYLSG 67 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-cccccccCCcc--eEEEeeCCeEEEEEECCCCcchh----------HHHHHHHhh
Confidence 379999999999999999997632 22222222222 23455677899999999964431 223467889
Q ss_pred ccEEEEEecccHH-----------HHH--HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEe
Q 006555 439 AHVVALVLDAEEV-----------RAV--EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFT 505 (640)
Q Consensus 439 advvllVvDa~~~-----------~~~--~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~i 505 (640)
+|++|+|+|+++. ... ..++|+++|+||+|+.......++ .+.. ....++...+.+++++
T Consensus 68 ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i----~~~~---~~~~~~~~~~~~~~~~ 140 (164)
T cd04162 68 SQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEI----HKEL---ELEPIARGRRWILQGT 140 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHH----HHHh---CChhhcCCCceEEEEe
Confidence 9999999999875 111 257899999999999765322111 1111 0112333346678899
Q ss_pred cccc------CCCHHHHHHHHH
Q 006555 506 SALE------GRGRIAVMHQVI 521 (640)
Q Consensus 506 SAk~------g~gv~~l~~~i~ 521 (640)
||++ ++||.++|+.++
T Consensus 141 Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 141 SLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred eecCCCChhHHHHHHHHHHHHh
Confidence 9888 999999998875
No 349
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.71 E-value=1.3e-16 Score=175.31 Aligned_cols=159 Identities=26% Similarity=0.303 Sum_probs=120.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 233 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 233 (640)
.+|+++|.||||||||+|+|+|.+ ..|++.|| +|.+...+.....+.++.++|+||..+-.+.... + ..+.++
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpG--vTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~D--E--~Var~~ 76 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN-QKVGNWPG--VTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSED--E--KVARDF 76 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC-ceecCCCC--eeEEEEEEEEEecCceEEEEeCCCcCCCCCCCch--H--HHHHHH
Confidence 469999999999999999999986 57899999 9999999999999999999999999844332111 1 223333
Q ss_pred H--hccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCC
Q 006555 234 L--AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGL 311 (640)
Q Consensus 234 ~--~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~ 311 (640)
+ .+.|+++.|+|+++- +.+..+.-.|.+. ++|+++++|++|..+..-. ..+.....+.+|. +++++||++|.
T Consensus 77 ll~~~~D~ivnVvDAtnL--eRnLyltlQLlE~--g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGv-PVv~tvA~~g~ 150 (653)
T COG0370 77 LLEGKPDLIVNVVDATNL--ERNLYLTLQLLEL--GIPMILALNMIDEAKKRGI-RIDIEKLSKLLGV-PVVPTVAKRGE 150 (653)
T ss_pred HhcCCCCEEEEEcccchH--HHHHHHHHHHHHc--CCCeEEEeccHhhHHhcCC-cccHHHHHHHhCC-CEEEEEeecCC
Confidence 3 466999999999852 2222333334444 8899999999998765332 2234445567888 89999999999
Q ss_pred ChhHHHHHhccchH
Q 006555 312 GMTELYEALRPSVE 325 (640)
Q Consensus 312 gi~eL~~~I~~~l~ 325 (640)
|++++++++.+..+
T Consensus 151 G~~~l~~~i~~~~~ 164 (653)
T COG0370 151 GLEELKRAIIELAE 164 (653)
T ss_pred CHHHHHHHHHHhcc
Confidence 99999999876443
No 350
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.71 E-value=2.2e-16 Score=146.82 Aligned_cols=140 Identities=30% Similarity=0.429 Sum_probs=98.8
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECC--eEEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+||+++|.+|+|||||+|++++.. ......++++.+.....+.+++ ..+.+|||||+.+... + ....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~----~~~~ 70 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA------I----RRLY 70 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchH------H----HHHH
Confidence 689999999999999999999886 7777788899988877778888 6788999999644321 0 1122
Q ss_pred HhhccEEEEEec-------ccHH---------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCC
Q 006555 436 LMRAHVVALVLD-------AEEV---------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 499 (640)
Q Consensus 436 i~~advvllVvD-------a~~~---------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 499 (640)
...++.++.++| +.+. .....+.|+++++||+|+..... .......+.....
T Consensus 71 ~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~ 138 (161)
T TIGR00231 71 YRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKL------------KTHVAFLFAKLNG 138 (161)
T ss_pred HhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchh------------hHHHHHHHhhccC
Confidence 334444444444 4433 11122789999999999976421 1122222333445
Q ss_pred CcEEEeccccCCCHHHHHHHH
Q 006555 500 IPVVFTSALEGRGRIAVMHQV 520 (640)
Q Consensus 500 ~~~v~iSAk~g~gv~~l~~~i 520 (640)
.+++++||++|.|+.++++.|
T Consensus 139 ~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 139 EPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred CceEEeecCCCCCHHHHHHHh
Confidence 679999999999999999876
No 351
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.5e-16 Score=139.64 Aligned_cols=160 Identities=18% Similarity=0.266 Sum_probs=128.2
Q ss_pred cCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHH
Q 006555 151 NLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAG 228 (640)
Q Consensus 151 ~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~ 228 (640)
..+++-.|+|+-|||||+|+..++.+++.. +-|. ++..+...+.+++.| .++++|||+|++ ++..
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfma--dcph-tigvefgtriievsgqkiklqiwdtagqe----------rfra 75 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMA--DCPH-TIGVEFGTRIIEVSGQKIKLQIWDTAGQE----------RFRA 75 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhh--cCCc-ccceecceeEEEecCcEEEEEEeecccHH----------HHHH
Confidence 346899999999999999999999876532 2221 244555566666666 578999999999 8889
Q ss_pred HHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHh----CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEE
Q 006555 229 MTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 304 (640)
Q Consensus 229 ~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~----~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~ 304 (640)
.+..+++.|...++|+|++.+.+.. .+..||... .++.-+++++||.|+...+++..++..+...+.|+ ...+
T Consensus 76 vtrsyyrgaagalmvyditrrstyn--hlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl-~fle 152 (215)
T KOG0097|consen 76 VTRSYYRGAAGALMVYDITRRSTYN--HLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGL-MFLE 152 (215)
T ss_pred HHHHHhccccceeEEEEehhhhhhh--hHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCe-EEEE
Confidence 9999999999999999999877776 455677653 45667899999999999998889988888888888 7899
Q ss_pred eeccCCCChhHHHHHhccchHH
Q 006555 305 ISAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 305 iSA~~g~gi~eL~~~I~~~l~~ 326 (640)
.||++|.|+++.+-.....+-.
T Consensus 153 ~saktg~nvedafle~akkiyq 174 (215)
T KOG0097|consen 153 ASAKTGQNVEDAFLETAKKIYQ 174 (215)
T ss_pred ecccccCcHHHHHHHHHHHHHH
Confidence 9999999999877655544433
No 352
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.71 E-value=8.1e-17 Score=152.16 Aligned_cols=138 Identities=15% Similarity=0.180 Sum_probs=90.4
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHHhh
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 438 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 438 (640)
+|+++|++|+|||||+|+|.|.... . ..|. .+.+.+. .+|||||+..... +.+ .....+++.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~~-----~v~~~~~--~~iDtpG~~~~~~----~~~--~~~~~~~~~ 64 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKTQ-----AVEFNDK--GDIDTPGEYFSHP----RWY--HALITTLQD 64 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C---ccce-----EEEECCC--CcccCCccccCCH----HHH--HHHHHHHhc
Confidence 7999999999999999999876321 1 1111 2223332 2799999754321 111 222345778
Q ss_pred ccEEEEEecccHH------HHH--HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEeccccC
Q 006555 439 AHVVALVLDAEEV------RAV--EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEG 510 (640)
Q Consensus 439 advvllVvDa~~~------~~~--~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g 510 (640)
||++++|+|+++. ... ..++|+++++||+|+.+.. . +.+. ..+. ... ...|++++||++|
T Consensus 65 ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~~-~----~~~~----~~~~-~~~--~~~p~~~~Sa~~g 132 (158)
T PRK15467 65 VDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDAD-V----AATR----KLLL-ETG--FEEPIFELNSHDP 132 (158)
T ss_pred CCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCccc-H----HHHH----HHHH-HcC--CCCCEEEEECCCc
Confidence 9999999999865 122 2467999999999986431 1 1111 1111 111 1259999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 006555 511 RGRIAVMHQVIDTYQK 526 (640)
Q Consensus 511 ~gv~~l~~~i~~~~~~ 526 (640)
+|++++++.+.+...+
T Consensus 133 ~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 133 QSVQQLVDYLASLTKQ 148 (158)
T ss_pred cCHHHHHHHHHHhchh
Confidence 9999999998876543
No 353
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.71 E-value=2.4e-16 Score=154.49 Aligned_cols=169 Identities=17% Similarity=0.159 Sum_probs=119.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCc-cchHHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATS-GSILDRTAGMTANV 233 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~~~ 233 (640)
+|+|+|+||||||||+|+|+|.....+... ...+|+++......+.+.++.++||||+.+.... .....+........
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~-~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLS-ASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccC-CCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 799999999999999999999876554432 1238888888888889999999999999865322 12223333333444
Q ss_pred HhccceEEEEeecCCCCChhhHHHHHHHHHhCC---CCcEEEEecCCCCCcCCccch------HHHHHHHHhcCCCCcEE
Q 006555 234 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAP---QIKPIVAMNKCESLHNGTGSL------AGAAAESLMLGFGDPIA 304 (640)
Q Consensus 234 ~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~---~~p~ilV~NK~Dl~~~~~~~~------~~~~~~~~~~g~~~~i~ 304 (640)
....|++|+|+|+.. .+..+..+++++++.+. -.++++|+|++|......... ..........+- .++.
T Consensus 81 ~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~-r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGG-RYVA 158 (196)
T ss_pred CCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCC-eEEE
Confidence 567899999999988 88888888888887543 268899999999876542110 111112222222 2333
Q ss_pred e-----eccCCCChhHHHHHhccchHH
Q 006555 305 I-----SAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 305 i-----SA~~g~gi~eL~~~I~~~l~~ 326 (640)
. |+..+.++.+|++.|.+.+++
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 3 466788999999999888764
No 354
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.70 E-value=4.4e-16 Score=147.09 Aligned_cols=162 Identities=25% Similarity=0.319 Sum_probs=107.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHcC-CceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRR-REALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 233 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~-~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 233 (640)
.|+++|.+|||||||+|+|++. .....+..++ .|.+.... ... ..+.+|||||+...........++......+
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~--~t~~~~~~--~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~ 75 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPG--KTQLINFF--NVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEY 75 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCC--cceeEEEE--Ecc-CeEEEecCCCccccccCHHHHHHHHHHHHHH
Confidence 3899999999999999999943 3344444444 55554332 223 3899999999874322211222233333333
Q ss_pred H---hccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchH-HHHHH-HH-hcCCCCcEEeec
Q 006555 234 L---AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLA-GAAAE-SL-MLGFGDPIAISA 307 (640)
Q Consensus 234 ~---~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~-~~~~~-~~-~~g~~~~i~iSA 307 (640)
+ ...+++++++|.+...+..+.++.+++... +.|+++|+||+|+......... ..... .. .....+++++||
T Consensus 76 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~--~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa 153 (170)
T cd01876 76 LENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL--GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSS 153 (170)
T ss_pred HHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc--CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEec
Confidence 3 345789999999887777777778888876 6899999999999654321111 11111 11 133347789999
Q ss_pred cCCCChhHHHHHhccc
Q 006555 308 ETGLGMTELYEALRPS 323 (640)
Q Consensus 308 ~~g~gi~eL~~~I~~~ 323 (640)
+++.|+.++++.|.+.
T Consensus 154 ~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 154 LKGQGIDELRALIEKW 169 (170)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999988754
No 355
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.70 E-value=1.7e-16 Score=179.11 Aligned_cols=151 Identities=25% Similarity=0.314 Sum_probs=110.5
Q ss_pred eCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHH--Hhcc
Q 006555 160 GRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV--LAKT 237 (640)
Q Consensus 160 G~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~--~~~a 237 (640)
|+||||||||+|+|++.+. .+++.+| +|.+...+.+.+++.++.+|||||+.+..... ..+ .....+ ...+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG--~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s-~~e---~v~~~~l~~~~a 73 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPG--VTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFS-LEE---EVARDYLLNEKP 73 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCC--eEEEEEEEEEEECCeEEEEEECCCccccCccc-hHH---HHHHHHHhhcCC
Confidence 8999999999999999764 6778888 99999999899999999999999997543211 111 112222 2478
Q ss_pred ceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCChhHHH
Q 006555 238 QFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELY 317 (640)
Q Consensus 238 d~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~gi~eL~ 317 (640)
|++++|+|+++. ..+......+.+. ++|+++|+||+|+.+..... .+.......+|. +++++||++|+|+++++
T Consensus 74 DvvI~VvDat~l--er~l~l~~ql~~~--~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~-pvv~tSA~tg~Gi~eL~ 147 (591)
T TIGR00437 74 DLVVNVVDASNL--ERNLYLTLQLLEL--GIPMILALNLVDEAEKKGIR-IDEEKLEERLGV-PVVPTSATEGRGIERLK 147 (591)
T ss_pred CEEEEEecCCcc--hhhHHHHHHHHhc--CCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCC-CEEEEECCCCCCHHHHH
Confidence 999999999863 2223333334443 78999999999987543322 223334455676 78999999999999999
Q ss_pred HHhccc
Q 006555 318 EALRPS 323 (640)
Q Consensus 318 ~~I~~~ 323 (640)
+.+.+.
T Consensus 148 ~~i~~~ 153 (591)
T TIGR00437 148 DAIRKA 153 (591)
T ss_pred HHHHHH
Confidence 999764
No 356
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.70 E-value=1.5e-16 Score=156.07 Aligned_cols=140 Identities=16% Similarity=0.109 Sum_probs=94.5
Q ss_pred EeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECC--eEEEEEEeCCCCcccccCCchhhHHHHHHHHHhhcc
Q 006555 363 VGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAH 440 (640)
Q Consensus 363 vG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad 440 (640)
+|.+|||||||+++++... +.....+.+..+.....+.+++ ..+.||||||..++ .. ....+++++|
T Consensus 1 vG~~~vGKTsLi~r~~~~~-f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~---------~~-l~~~~~~~ad 69 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE-FEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKF---------GG-LRDGYYIQGQ 69 (200)
T ss_pred CCCCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhh---------hh-hhHHHhcCCC
Confidence 5999999999999999653 2211222222344344445544 47789999996433 11 2235788999
Q ss_pred EEEEEecccHH-----------HHH--HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEecc
Q 006555 441 VVALVLDAEEV-----------RAV--EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 507 (640)
Q Consensus 441 vvllVvDa~~~-----------~~~--~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSA 507 (640)
++|+|||+++. ... ..+.|+|||+||+|+....... +. . .+ +...+++++++||
T Consensus 70 ~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~---~~----~--~~----~~~~~~~~~e~SA 136 (200)
T smart00176 70 CAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKA---KS----I--TF----HRKKNLQYYDISA 136 (200)
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCH---HH----H--HH----HHHcCCEEEEEeC
Confidence 99999999986 111 2578999999999986432111 11 1 11 1123578999999
Q ss_pred ccCCCHHHHHHHHHHHHHH
Q 006555 508 LEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 508 k~g~gv~~l~~~i~~~~~~ 526 (640)
++|.||+++|+++.+.+.+
T Consensus 137 k~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 137 KSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999877643
No 357
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.70 E-value=1.4e-16 Score=161.21 Aligned_cols=174 Identities=26% Similarity=0.270 Sum_probs=126.2
Q ss_pred ccccCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEE-CCeeEEEEeCCCCccccCccchHHHH
Q 006555 148 IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-GDLRFKVLDSAGLETEATSGSILDRT 226 (640)
Q Consensus 148 ~~~~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~ 226 (640)
++...+..|++||.||||||||+++++..+. .+.++|. ||.....+.+.. .+..|.+-|.||+++.+..+.-+..
T Consensus 154 LELKllADVGLVG~PNaGKSTlls~vS~AkP-KIadYpF--TTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~- 229 (369)
T COG0536 154 LELKLLADVGLVGLPNAGKSTLLSAVSAAKP-KIADYPF--TTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGL- 229 (369)
T ss_pred EEEeeecccccccCCCCcHHHHHHHHhhcCC-cccCCcc--ccccCcccEEEecCCCcEEEecCcccccccccCCCccH-
Confidence 4455577899999999999999999998875 4477877 999999999887 4567999999999988887665442
Q ss_pred HHHHHHHHhccceEEEEeecCCCCC---hhhHH-HHHHHHHh---CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCC
Q 006555 227 AGMTANVLAKTQFAIFMIDVRSGLH---PLDLE-VGKWLRKH---APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF 299 (640)
Q Consensus 227 ~~~~~~~~~~ad~vl~VvD~s~~~~---~~~~~-~~~~L~~~---~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~ 299 (640)
.-+.+++++.++++|+|++.... .++++ +...|.++ ..++|.++|+||+|+....+.............+.
T Consensus 230 --~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~ 307 (369)
T COG0536 230 --RFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGW 307 (369)
T ss_pred --HHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCC
Confidence 22578899999999999986432 23333 33444443 34899999999999765433222212222223343
Q ss_pred CCcEEeeccCCCChhHHHHHhccchHHH
Q 006555 300 GDPIAISAETGLGMTELYEALRPSVEDY 327 (640)
Q Consensus 300 ~~~i~iSA~~g~gi~eL~~~I~~~l~~~ 327 (640)
...++|||.+++|+++|...+.+.+.+.
T Consensus 308 ~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 308 EVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred CcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 2333499999999999999999887664
No 358
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.70 E-value=2.5e-16 Score=147.19 Aligned_cols=142 Identities=19% Similarity=0.149 Sum_probs=96.4
Q ss_pred EEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHHhhc
Q 006555 360 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRA 439 (640)
Q Consensus 360 v~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~a 439 (640)
|+++|++|||||||+|+|.+.+. .....+.+..+.. .+..++..+.+|||||..+.. .....++..+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~~~----------~~~~~~~~~~ 68 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF-SEDTIPTVGFNMR--KVTKGNVTLKVWDLGGQPRFR----------SMWERYCRGV 68 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC-CcCccCCCCcceE--EEEECCEEEEEEECCCCHhHH----------HHHHHHHhcC
Confidence 79999999999999999998643 2333333333332 345667889999999964331 1234567889
Q ss_pred cEEEEEecccHHH-----------HH----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEE
Q 006555 440 HVVALVLDAEEVR-----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVF 504 (640)
Q Consensus 440 dvvllVvDa~~~~-----------~~----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~ 504 (640)
|++++|+|+++.. .. ..++|+++|+||+|+.+.....+.. ..+..........++++
T Consensus 69 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 140 (159)
T cd04159 69 NAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELI--------EQMNLKSITDREVSCYS 140 (159)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHH--------HHhCcccccCCceEEEE
Confidence 9999999998641 01 1478999999999987643211111 11111111123467899
Q ss_pred eccccCCCHHHHHHHHHH
Q 006555 505 TSALEGRGRIAVMHQVID 522 (640)
Q Consensus 505 iSAk~g~gv~~l~~~i~~ 522 (640)
+||++|.|++++++++.+
T Consensus 141 ~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 141 ISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EEeccCCChHHHHHHHhh
Confidence 999999999999998864
No 359
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.70 E-value=2.4e-16 Score=176.63 Aligned_cols=160 Identities=24% Similarity=0.293 Sum_probs=112.1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEEC------------------CeeEEEEeCCCCc
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG------------------DLRFKVLDSAGLE 214 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~------------------~~~~~liDTpG~~ 214 (640)
.|.|+++|++|+|||||+|+|++..... ..++ ++|++.....+... ...+.+|||||++
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~--~e~g-giTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAK--REAG-GITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccccc--ccCC-ceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 4789999999999999999999875432 2232 25554433333221 1248999999987
Q ss_pred cccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCcc----c----
Q 006555 215 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTG----S---- 286 (640)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~----~---- 286 (640)
.+..+...++..+|++++|+|++++..+.+.+.+++++.. ++|+++|+||+|+...... .
T Consensus 81 ----------~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~--~vpiIVv~NK~Dl~~~~~~~~~~~f~e~ 148 (590)
T TIGR00491 81 ----------AFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY--KTPFVVAANKIDRIPGWRSHEGRPFMES 148 (590)
T ss_pred ----------hHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc--CCCEEEEEECCCccchhhhccCchHHHH
Confidence 4555666788999999999999998888877777777665 7899999999999742100 0
Q ss_pred ----hHH-----------HHHHHHhcCC--------------CCcEEeeccCCCChhHHHHHhccchHHH
Q 006555 287 ----LAG-----------AAAESLMLGF--------------GDPIAISAETGLGMTELYEALRPSVEDY 327 (640)
Q Consensus 287 ----~~~-----------~~~~~~~~g~--------------~~~i~iSA~~g~gi~eL~~~I~~~l~~~ 327 (640)
... ....+...|+ -+++++||++|+|+++|++.|.....++
T Consensus 149 sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~ 218 (590)
T TIGR00491 149 FSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQY 218 (590)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHH
Confidence 000 0011222221 2679999999999999999887655443
No 360
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.70 E-value=1.2e-16 Score=175.10 Aligned_cols=150 Identities=30% Similarity=0.344 Sum_probs=103.6
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCceeec------------------------------CcccceeeeEEEEEEECCe
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVG------------------------------PEAGLTRDSVRVHFEYQGR 405 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~------------------------------~~~gtT~d~~~~~~~~~~~ 405 (640)
+.++|+++|++|+|||||+++|++....+.. ...|+|+|.....++.++.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 4589999999999999999999965433221 1579999999999999999
Q ss_pred EEEEEEeCCCCcccccCCchhhHHHHHHHHHhhccEEEEEecccH--H----------HHHHcCC-cEEEEEeCCCCCCC
Q 006555 406 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEE--V----------RAVEEGR-GLVVIVNKMDLLSG 472 (640)
Q Consensus 406 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~advvllVvDa~~--~----------~~~~~~~-p~Ilv~NK~Dl~~~ 472 (640)
++.||||||+.++. ..+...+..+|++++|+|+++ . .....+. |+++|+||+|+...
T Consensus 85 ~i~liDtpG~~~~~----------~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~ 154 (425)
T PRK12317 85 YFTIVDCPGHRDFV----------KNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNY 154 (425)
T ss_pred EEEEEECCCcccch----------hhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 99999999975431 112344568999999999987 3 1122454 69999999999753
Q ss_pred ccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEeccccCCCHHHHH
Q 006555 473 RQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVM 517 (640)
Q Consensus 473 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g~gv~~l~ 517 (640)
. .+.++...+.+...+...-......+++++||++|.|++++.
T Consensus 155 ~--~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 155 D--EKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred c--HHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 1 112222222222222111111124689999999999998765
No 361
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.70 E-value=3.5e-18 Score=148.61 Aligned_cols=149 Identities=19% Similarity=0.190 Sum_probs=108.9
Q ss_pred EEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHHHhhc
Q 006555 362 IVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRA 439 (640)
Q Consensus 362 ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~a 439 (640)
++|++++|||+|+-++-......-.-...+.+|.....++.+++ ++++|||+|+.++. .-+..+++.|
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfr----------svt~ayyrda 71 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFR----------SVTHAYYRDA 71 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHh----------hhhHhhhccc
Confidence 68999999999987665332222222334566777777777776 56899999976553 3456789999
Q ss_pred cEEEEEecccHH--------------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEe
Q 006555 440 HVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFT 505 (640)
Q Consensus 440 dvvllVvDa~~~--------------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~i 505 (640)
|.++++||+.+. +..+....+++++||||+.++ +.++.+..+.++...++|++++
T Consensus 72 ~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~e-----------r~v~~ddg~kla~~y~ipfmet 140 (192)
T KOG0083|consen 72 DALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHE-----------RAVKRDDGEKLAEAYGIPFMET 140 (192)
T ss_pred ceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchh-----------hccccchHHHHHHHHCCCceec
Confidence 999999999875 112345678999999999765 2333344444445568999999
Q ss_pred ccccCCCHHHHHHHHHHHHHHHhcCC
Q 006555 506 SALEGRGRIAVMHQVIDTYQKWCLRL 531 (640)
Q Consensus 506 SAk~g~gv~~l~~~i~~~~~~~~~~i 531 (640)
|||+|.|++-.|-.|.+...+..-..
T Consensus 141 saktg~nvd~af~~ia~~l~k~~~~~ 166 (192)
T KOG0083|consen 141 SAKTGFNVDLAFLAIAEELKKLKMGA 166 (192)
T ss_pred cccccccHhHHHHHHHHHHHHhccCC
Confidence 99999999999999998877665443
No 362
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.70 E-value=1.8e-16 Score=159.35 Aligned_cols=144 Identities=27% Similarity=0.309 Sum_probs=107.7
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHHhh
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 438 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 438 (640)
+|+++|.||+|||||+|+|++.. ..+..++++|.++..+.+.+++..+++|||||+.+.... ... ...+....+++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~-~~~--~~~~~l~~~~~ 77 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAAD-GKG--RGRQVIAVART 77 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEECCeEEEEEECCCccccccc-chh--HHHHHHHhhcc
Confidence 68999999999999999999864 567888999999998989999999999999998654211 111 11234567889
Q ss_pred ccEEEEEecccHHH------------------------------------------------------------------
Q 006555 439 AHVVALVLDAEEVR------------------------------------------------------------------ 452 (640)
Q Consensus 439 advvllVvDa~~~~------------------------------------------------------------------ 452 (640)
+|++++|+|+++..
T Consensus 78 ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~ 157 (233)
T cd01896 78 ADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLI 157 (233)
T ss_pred CCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEE
Confidence 99999999986530
Q ss_pred -----------HHH---cCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEeccccCCCHHHHHH
Q 006555 453 -----------AVE---EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMH 518 (640)
Q Consensus 453 -----------~~~---~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g~gv~~l~~ 518 (640)
.+. ..+|+++|+||+|+....+. . .++. ..+++++||++|.|++++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~-----------~-----~~~~--~~~~~~~SA~~g~gi~~l~~ 219 (233)
T cd01896 158 REDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEEL-----------D-----LLAR--QPNSVVISAEKGLNLDELKE 219 (233)
T ss_pred ccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHH-----------H-----HHhc--CCCEEEEcCCCCCCHHHHHH
Confidence 001 23589999999999754210 0 1111 23689999999999999999
Q ss_pred HHHHHH
Q 006555 519 QVIDTY 524 (640)
Q Consensus 519 ~i~~~~ 524 (640)
.+.+.+
T Consensus 220 ~i~~~L 225 (233)
T cd01896 220 RIWDKL 225 (233)
T ss_pred HHHHHh
Confidence 887643
No 363
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.70 E-value=2.5e-16 Score=177.70 Aligned_cols=158 Identities=20% Similarity=0.272 Sum_probs=111.1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceee--------cCC------CCCceeeeeEEEEEEEC---C--eeEEEEeCCCC
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALV--------YNT------PDDHVTRDIREGLAKLG---D--LRFKVLDSAGL 213 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v--------~~~------~~~~tT~~~~~~~~~~~---~--~~~~liDTpG~ 213 (640)
+..|+|+|++++|||||+++|+....++. .+. .| +|.+.....+.+. + .++.||||||+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerG--iTi~~~~v~~~~~~~~g~~~~l~liDTPG~ 80 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERG--ITIKAQAVRLNYKAKDGETYVLNLIDTPGH 80 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcC--CCeeeeEEEEEEEcCCCCEEEEEEEECCCc
Confidence 35799999999999999999987532211 111 13 5555444444442 2 67999999999
Q ss_pred ccccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHH
Q 006555 214 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAE 293 (640)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~ 293 (640)
. ++...+..++..+|++++|+|++++.+..+...+..+... +.|+++|+||+|+...... ......
T Consensus 81 ~----------dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~--~ipiIiViNKiDl~~~~~~--~~~~el 146 (595)
T TIGR01393 81 V----------DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALEN--DLEIIPVINKIDLPSADPE--RVKKEI 146 (595)
T ss_pred H----------HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHc--CCCEEEEEECcCCCccCHH--HHHHHH
Confidence 8 5556677889999999999999998877765443333333 7899999999998653211 111122
Q ss_pred HHhcCC--CCcEEeeccCCCChhHHHHHhccchHH
Q 006555 294 SLMLGF--GDPIAISAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 294 ~~~~g~--~~~i~iSA~~g~gi~eL~~~I~~~l~~ 326 (640)
...+++ .+++++||++|.|+++|++.|.+.++.
T Consensus 147 ~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 147 EEVIGLDASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred HHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 223444 257999999999999999999887653
No 364
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.70 E-value=1.4e-16 Score=174.51 Aligned_cols=152 Identities=21% Similarity=0.231 Sum_probs=110.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecC------------------------------CCCCceeeeeEEEEEEECCe
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYN------------------------------TPDDHVTRDIREGLAKLGDL 203 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~------------------------------~~~~~tT~~~~~~~~~~~~~ 203 (640)
..|+++|++|+|||||+++|+....++... ..| +|+|.....+.+++.
T Consensus 7 ~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG--~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 7 LNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERG--VTIDLAHKKFETDKY 84 (425)
T ss_pred EEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcC--ccceeeeEEEecCCe
Confidence 489999999999999999999554333211 345 899999999999999
Q ss_pred eEEEEeCCCCccccCccchHHHHHHHHHHHHhccceEEEEeecCC--CCChhhHHHHHHHHHhCCCCcEEEEecCCCCCc
Q 006555 204 RFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRS--GLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLH 281 (640)
Q Consensus 204 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~--~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~ 281 (640)
++.+|||||+. ++.......+..+|++++|+|+++ +....+.+...++... ...|+++|+||+|+..
T Consensus 85 ~i~liDtpG~~----------~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 85 YFTIVDCPGHR----------DFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVN 153 (425)
T ss_pred EEEEEECCCcc----------cchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEcccccc
Confidence 99999999986 333344455789999999999998 6666666666655554 2246899999999975
Q ss_pred CCccch----HHHHHHHHhcCC----CCcEEeeccCCCChhHHHH
Q 006555 282 NGTGSL----AGAAAESLMLGF----GDPIAISAETGLGMTELYE 318 (640)
Q Consensus 282 ~~~~~~----~~~~~~~~~~g~----~~~i~iSA~~g~gi~eL~~ 318 (640)
...... .+....+...++ .+++++||++|.|++++.+
T Consensus 154 ~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 154 YDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 322111 122233344554 2579999999999997553
No 365
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.69 E-value=4.4e-16 Score=144.88 Aligned_cols=151 Identities=32% Similarity=0.454 Sum_probs=110.2
Q ss_pred EEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEEC-CeEEEEEEeCCCCcccccCCchhhHHHHHHHHHhhcc
Q 006555 362 IVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ-GRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAH 440 (640)
Q Consensus 362 ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad 440 (640)
++|.+|+|||||+|+|++......++.+++|.+......... +..+.+|||||+........ .........+..+|
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~---~~~~~~~~~~~~~d 77 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGR---EREELARRVLERAD 77 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchh---hHHHHHHHHHHhCC
Confidence 579999999999999998876667788888888777766665 67899999999876532111 11123446678899
Q ss_pred EEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEeccccC
Q 006555 441 VVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEG 510 (640)
Q Consensus 441 vvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g 510 (640)
++++|+|+++. .....+.|+++|+||+|+..........+ ............+++++||+++
T Consensus 78 ~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~sa~~~ 149 (163)
T cd00880 78 LILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLE--------LRLLILLLLLGLPVIAVSALTG 149 (163)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHH--------HHHhhcccccCCceEEEeeecc
Confidence 99999999875 12236889999999999986533221111 1112223345679999999999
Q ss_pred CCHHHHHHHHHHH
Q 006555 511 RGRIAVMHQVIDT 523 (640)
Q Consensus 511 ~gv~~l~~~i~~~ 523 (640)
.|++++++.+.+.
T Consensus 150 ~~v~~l~~~l~~~ 162 (163)
T cd00880 150 EGIDELREALIEA 162 (163)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999988764
No 366
>PRK13796 GTPase YqeH; Provisional
Probab=99.68 E-value=4.3e-16 Score=166.46 Aligned_cols=153 Identities=25% Similarity=0.322 Sum_probs=107.1
Q ss_pred HHHHHHHhccc-eEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccc--hHHH-HHHHHhcCCC--C
Q 006555 228 GMTANVLAKTQ-FAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS--LAGA-AAESLMLGFG--D 301 (640)
Q Consensus 228 ~~~~~~~~~ad-~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~--~~~~-~~~~~~~g~~--~ 301 (640)
..+...+..+| +|++|+|+.+.... +...+.+...++|+++|+||+|+....... .... ...+...|+. .
T Consensus 60 ~~~l~~i~~~~~lIv~VVD~~D~~~s----~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~ 135 (365)
T PRK13796 60 LKLLNGIGDSDALVVNVVDIFDFNGS----WIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVD 135 (365)
T ss_pred HHHHHhhcccCcEEEEEEECccCCCc----hhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCc
Confidence 33566677777 99999999874432 233344433478999999999997532211 1111 2223445653 6
Q ss_pred cEEeeccCCCChhHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEeCCCCchHHHHHHHhcCC
Q 006555 302 PIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQED 381 (640)
Q Consensus 302 ~i~iSA~~g~gi~eL~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKStL~n~l~~~~ 381 (640)
++.+||++|.|+++|++.|.+... ..+++++|.+|||||||+|+|++..
T Consensus 136 v~~vSAk~g~gI~eL~~~I~~~~~-------------------------------~~~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 136 VVLISAQKGHGIDELLEAIEKYRE-------------------------------GRDVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-------------------------------CCeEEEEcCCCCcHHHHHHHHHhhc
Confidence 799999999999999998865321 1379999999999999999998542
Q ss_pred -----ceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcc
Q 006555 382 -----RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 418 (640)
Q Consensus 382 -----~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~ 418 (640)
...+++.||||++.....+. + ...|+||||+...
T Consensus 185 ~~~~~~~~~s~~pGTT~~~~~~~l~--~-~~~l~DTPGi~~~ 223 (365)
T PRK13796 185 TGEKDVITTSRFPGTTLDKIEIPLD--D-GSFLYDTPGIIHR 223 (365)
T ss_pred cCccceEEecCCCCccceeEEEEcC--C-CcEEEECCCcccc
Confidence 34588999999997765432 2 2479999998643
No 367
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.68 E-value=3.6e-16 Score=176.35 Aligned_cols=154 Identities=21% Similarity=0.198 Sum_probs=109.8
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCC--ceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQED--RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~--~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+.|+++|++|+|||||+++|++.+ ........|+|.+.....+.+++..+.+|||||+.++ . ..+...
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f---------~-~~~~~g 70 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKF---------I-SNAIAG 70 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHH---------H-HHHHhh
Confidence 368999999999999999999753 2223345689999887788888899999999996432 1 234556
Q ss_pred HhhccEEEEEecccHH----------HHHHcCCc-EEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEE
Q 006555 436 LMRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVF 504 (640)
Q Consensus 436 i~~advvllVvDa~~~----------~~~~~~~p-~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~ 504 (640)
+.++|++++|+|++++ .....++| +|+|+||+|+.+... ++...+.+...+. ......+.++++
T Consensus 71 ~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~----~~~~~~ei~~~l~-~~~~~~~~~ii~ 145 (581)
T TIGR00475 71 GGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEE----IKRTEMFMKQILN-SYIFLKNAKIFK 145 (581)
T ss_pred hccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHH----HHHHHHHHHHHHH-HhCCCCCCcEEE
Confidence 7789999999999873 12235788 999999999976421 1111122211111 111122579999
Q ss_pred eccccCCCHHHHHHHHHHHHHH
Q 006555 505 TSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 505 iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
+||++|.|++++++.+......
T Consensus 146 vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 146 TSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred EeCCCCCCchhHHHHHHHHHHh
Confidence 9999999999999888765543
No 368
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.68 E-value=2.8e-16 Score=156.67 Aligned_cols=146 Identities=27% Similarity=0.284 Sum_probs=99.4
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCce------------------------------eecCcccceeeeEEEEEEECCeEEE
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRV------------------------------LVGPEAGLTRDSVRVHFEYQGRTVY 408 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~------------------------------~~~~~~gtT~d~~~~~~~~~~~~~~ 408 (640)
.|+++|++++|||||+.+|+..... ......|+|+|.....+++++..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4899999999999999999642110 1112448999999999999999999
Q ss_pred EEEeCCCCcccccCCchhhHHHHHHHHHhhccEEEEEecccHH-----------------HHHHcC-CcEEEEEeCCCCC
Q 006555 409 LVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------------RAVEEG-RGLVVIVNKMDLL 470 (640)
Q Consensus 409 liDTpG~~~~~~~~~~~~~~~~~~~~~i~~advvllVvDa~~~-----------------~~~~~~-~p~Ilv~NK~Dl~ 470 (640)
+|||||+.++. ..+..++..+|++|+|+|+++. .....+ +|+|+|+||+|+.
T Consensus 81 liDtpG~~~~~----------~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 81 ILDAPGHRDFV----------PNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDV 150 (219)
T ss_pred EEECCChHHHH----------HHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccc
Confidence 99999974331 2344566789999999999872 111234 6899999999997
Q ss_pred CCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEeccccCCCHH
Q 006555 471 SGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRI 514 (640)
Q Consensus 471 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g~gv~ 514 (640)
........++.+.+.+...+...-......+++++||++|.|++
T Consensus 151 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 151 TVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 43111222333333333222222111224789999999999986
No 369
>PRK12288 GTPase RsgA; Reviewed
Probab=99.68 E-value=3.6e-16 Score=165.04 Aligned_cols=146 Identities=27% Similarity=0.352 Sum_probs=103.8
Q ss_pred HHhccceEEEEeecCCCCChhhHHHHHHHHHh-CCCCcEEEEecCCCCCcCCcc-chHHHHHHHHhcCCCCcEEeeccCC
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGTG-SLAGAAAESLMLGFGDPIAISAETG 310 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~-~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~g~~~~i~iSA~~g 310 (640)
.+.++|.+++|++.....+.. .+-+||... ..++|.++|+||+|+..+... ........+...|+ +++++||++|
T Consensus 117 iaANvD~vlIV~s~~p~~s~~--~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~-~v~~vSA~tg 193 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLN--IIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGY-RVLMVSSHTG 193 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHH--HHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCC-eEEEEeCCCC
Confidence 367899999999987655554 333443321 237899999999999764321 11223334456676 8899999999
Q ss_pred CChhHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEeCCCCchHHHHHHHhcCCceeecCccc
Q 006555 311 LGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAG 390 (640)
Q Consensus 311 ~gi~eL~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~g 390 (640)
.|+++|++.|... .++++|.+|||||||+|+|++.....+++.++
T Consensus 194 ~GideL~~~L~~k-----------------------------------i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~ 238 (347)
T PRK12288 194 EGLEELEAALTGR-----------------------------------ISIFVGQSGVGKSSLINALLPEAEILVGDVSD 238 (347)
T ss_pred cCHHHHHHHHhhC-----------------------------------CEEEECCCCCCHHHHHHHhccccceeeccccC
Confidence 9999999876421 26899999999999999999988777777664
Q ss_pred -------ceeeeEEEEEEECCeEEEEEEeCCCCccc
Q 006555 391 -------LTRDSVRVHFEYQGRTVYLVDTAGWLQRE 419 (640)
Q Consensus 391 -------tT~d~~~~~~~~~~~~~~liDTpG~~~~~ 419 (640)
||+......+..+ ..|+||||+....
T Consensus 239 ~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 239 NSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred cCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 5665544433222 2599999997764
No 370
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.68 E-value=7e-16 Score=174.53 Aligned_cols=156 Identities=16% Similarity=0.151 Sum_probs=116.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceee--cCCCCCceeeeeEEEEEEE-CCeeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALV--YNTPDDHVTRDIREGLAKL-GDLRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v--~~~~~~~tT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.|+++|++++|||||+++|++.+.... ....| +|.+..+..... ++..+.+|||||++ ++.....
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rG--iTI~l~~~~~~~~~g~~i~~IDtPGhe----------~fi~~m~ 69 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRG--MTIDLGYAYWPQPDGRVLGFIDVPGHE----------KFLSNML 69 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCC--ceEEeeeEEEecCCCcEEEEEECCCHH----------HHHHHHH
Confidence 689999999999999999997532111 12234 788877666654 46789999999997 5656667
Q ss_pred HHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCc-EEEEecCCCCCcCCccc--hHHHHHHHHhcCC--CCcEEee
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTGS--LAGAAAESLMLGF--GDPIAIS 306 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p-~ilV~NK~Dl~~~~~~~--~~~~~~~~~~~g~--~~~i~iS 306 (640)
..+..+|++++|+|++++..+.+.+.+.+++.. ++| +|+|+||+|+.++.... ..+....+...++ .+++++|
T Consensus 70 ~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VS 147 (614)
T PRK10512 70 AGVGGIDHALLVVACDDGVMAQTREHLAILQLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTA 147 (614)
T ss_pred HHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 788999999999999999888888877777665 556 57999999997532211 1112222333443 3689999
Q ss_pred ccCCCChhHHHHHhccch
Q 006555 307 AETGLGMTELYEALRPSV 324 (640)
Q Consensus 307 A~~g~gi~eL~~~I~~~l 324 (640)
|++|.|+++|++.|....
T Consensus 148 A~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 148 ATEGRGIDALREHLLQLP 165 (614)
T ss_pred CCCCCCCHHHHHHHHHhh
Confidence 999999999999997654
No 371
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.67 E-value=6.4e-16 Score=173.60 Aligned_cols=151 Identities=22% Similarity=0.297 Sum_probs=105.9
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe-EEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR-TVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
++.+|+++|++|+|||||+++|.+.. ......+|+|.+.....+.+++. .+.||||||+.++. .++ .+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~-v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~---------~~r-~r 154 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTK-VAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT---------SMR-AR 154 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCC-cccccCCceeecceEEEEEECCCcEEEEEECCCCcchh---------hHH-Hh
Confidence 45789999999999999999999764 44455678888877667777544 89999999975442 122 24
Q ss_pred HHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEE
Q 006555 435 NLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVF 504 (640)
Q Consensus 435 ~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~ 504 (640)
.+..+|++++|+|++++ .....++|+|+++||+|+.+.. .....+.+.+ ... ....+ ....++++
T Consensus 155 ga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~-~e~v~~~L~~-~g~-~~~~~--~~~~~~v~ 229 (587)
T TIGR00487 155 GAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEAN-PDRVKQELSE-YGL-VPEDW--GGDTIFVP 229 (587)
T ss_pred hhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCC-HHHHHHHHHH-hhh-hHHhc--CCCceEEE
Confidence 56789999999999864 2223689999999999996532 1111111111 000 00011 12357999
Q ss_pred eccccCCCHHHHHHHHHH
Q 006555 505 TSALEGRGRIAVMHQVID 522 (640)
Q Consensus 505 iSAk~g~gv~~l~~~i~~ 522 (640)
+||++|.|++++++.+..
T Consensus 230 iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 230 VSALTGDGIDELLDMILL 247 (587)
T ss_pred EECCCCCChHHHHHhhhh
Confidence 999999999999998864
No 372
>PRK09866 hypothetical protein; Provisional
Probab=99.67 E-value=6.1e-16 Score=168.95 Aligned_cols=115 Identities=15% Similarity=0.109 Sum_probs=83.1
Q ss_pred eeEEEEeCCCCccccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcC
Q 006555 203 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 282 (640)
Q Consensus 203 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~ 282 (640)
.++.++||||+..... .. ........+.++|+|+||+|+..+.+..+..+.+.+++...+.|+++|+||+|+.+.
T Consensus 230 ~QIIFVDTPGIhk~~~--~~---L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dr 304 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--PH---LQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDR 304 (741)
T ss_pred CCEEEEECCCCCCccc--hH---HHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCc
Confidence 5789999999974321 11 122233479999999999999988888888899989876333599999999998643
Q ss_pred CccchHHHHHH---H-Hh--cCCCCcEEeeccCCCChhHHHHHhcc
Q 006555 283 GTGSLAGAAAE---S-LM--LGFGDPIAISAETGLGMTELYEALRP 322 (640)
Q Consensus 283 ~~~~~~~~~~~---~-~~--~g~~~~i~iSA~~g~gi~eL~~~I~~ 322 (640)
.....+..... . .. ..+..+++|||+.|.|+++|++.|..
T Consensus 305 eeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 305 NSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred ccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 32112222221 1 11 23567899999999999999999876
No 373
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.67 E-value=6.2e-16 Score=152.35 Aligned_cols=159 Identities=18% Similarity=0.071 Sum_probs=101.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCc-e-eecCCCCCceeeeeEEEEEEEC---------------------------C---
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRRE-A-LVYNTPDDHVTRDIREGLAKLG---------------------------D--- 202 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~-~-~v~~~~~~~tT~~~~~~~~~~~---------------------------~--- 202 (640)
.|+++|..++|||||+.+|++... . .....-+ .|.........+. +
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERN--ITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGET 79 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcC--CceeecccccccccccCcCCCCccccccccccccccccccCCcc
Confidence 689999999999999999986511 0 0000011 1222221111111 2
Q ss_pred ---eeEEEEeCCCCccccCccchHHHHHHHHHHHHhccceEEEEeecCCC-CChhhHHHHHHHHHhCCCCcEEEEecCCC
Q 006555 203 ---LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSG-LHPLDLEVGKWLRKHAPQIKPIVAMNKCE 278 (640)
Q Consensus 203 ---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~-~~~~~~~~~~~L~~~~~~~p~ilV~NK~D 278 (640)
.++.+|||||+. ++.......+..+|++++|+|++++ ......+.+..+... ...|+++|+||+|
T Consensus 80 ~~~~~i~~iDtPG~~----------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~~~~iiivvNK~D 148 (203)
T cd01888 80 KLVRHVSFVDCPGHE----------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-GLKHIIIVQNKID 148 (203)
T ss_pred ccccEEEEEECCChH----------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-CCCcEEEEEEchh
Confidence 689999999986 5666777888899999999999974 333434444545433 2347899999999
Q ss_pred CCcCCccc--hHHHHHHHHhc--CCCCcEEeeccCCCChhHHHHHhccchHH
Q 006555 279 SLHNGTGS--LAGAAAESLML--GFGDPIAISAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 279 l~~~~~~~--~~~~~~~~~~~--g~~~~i~iSA~~g~gi~eL~~~I~~~l~~ 326 (640)
+....... .......+... ...+++++||++|.|+++|++.|.+.+++
T Consensus 149 l~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 149 LVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred ccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 97532110 01111112211 12267999999999999999999876643
No 374
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.67 E-value=7e-16 Score=177.10 Aligned_cols=150 Identities=23% Similarity=0.356 Sum_probs=108.8
Q ss_pred cCCceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 355 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 355 ~~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
.++..|+++|++|+|||||+++|.+.. ...+...|+|.+.....+.+++..+.||||||+.++. .+. .+
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~-v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~---------~m~-~r 356 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTN-VAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT---------AMR-AR 356 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC-ccccccCceeeeccEEEEEECCEEEEEEECCCCccch---------hHH-Hh
Confidence 456789999999999999999998754 3455567888887777788889999999999976542 122 24
Q ss_pred HHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCC--CCCCcE
Q 006555 435 NLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ--VTGIPV 502 (640)
Q Consensus 435 ~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~ 502 (640)
.+..+|++|+|||++++ .....++|+||++||+|+.... .......+.+ ...++. ...+++
T Consensus 357 ga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~-~e~V~~eL~~------~~~~~e~~g~~vp~ 429 (787)
T PRK05306 357 GAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGAN-PDRVKQELSE------YGLVPEEWGGDTIF 429 (787)
T ss_pred hhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccC-HHHHHHHHHH------hcccHHHhCCCceE
Confidence 56779999999999874 2234689999999999996532 1111111111 001111 123689
Q ss_pred EEeccccCCCHHHHHHHHHH
Q 006555 503 VFTSALEGRGRIAVMHQVID 522 (640)
Q Consensus 503 v~iSAk~g~gv~~l~~~i~~ 522 (640)
+++||++|.|++++++.|..
T Consensus 430 vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 430 VPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred EEEeCCCCCCchHHHHhhhh
Confidence 99999999999999998865
No 375
>COG2262 HflX GTPases [General function prediction only]
Probab=99.67 E-value=4.9e-16 Score=161.32 Aligned_cols=151 Identities=28% Similarity=0.369 Sum_probs=116.6
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEEC-CeEEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ-GRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
-..|+++|.+|+|||||+|+|++.. ..+.+..++|.|+....+.+. |..+.+-||-|+.+.-+..-.+.| ..|+..
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~-~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AF--ksTLEE 268 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGAD-VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAF--KSTLEE 268 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccC-eeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHH--HHHHHH
Confidence 3589999999999999999999764 677888899999999888886 689999999999877433333322 467778
Q ss_pred HhhccEEEEEecccHH----------HHH----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 436 LMRAHVVALVLDAEEV----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 436 i~~advvllVvDa~~~----------~~~----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
...||++++|+|++++ ..+ ...+|+|+|.||+|+...... ...+... .. .
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~-----------~~~~~~~----~~-~ 332 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI-----------LAELERG----SP-N 332 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh-----------hhhhhhc----CC-C
Confidence 8899999999999998 111 146899999999998865220 0111111 11 5
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
.+++||++|.|++.|.+.|.+.+..
T Consensus 333 ~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 333 PVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred eEEEEeccCcCHHHHHHHHHHHhhh
Confidence 8999999999999999999887664
No 376
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=6.6e-16 Score=155.72 Aligned_cols=152 Identities=26% Similarity=0.301 Sum_probs=109.0
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 436 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 436 (640)
...|+|.|.||||||||++++++.. ..+.+||+||.....++++.++.+++++||||+.+...++..+ ...++..++
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~--IE~qAi~AL 244 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNE--IERQAILAL 244 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcH--HHHHHHHHH
Confidence 3579999999999999999999775 6788999999999999999999999999999998774322111 112333344
Q ss_pred hh-ccEEEEEecccHH------------HHH--HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 437 MR-AHVVALVLDAEEV------------RAV--EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 437 ~~-advvllVvDa~~~------------~~~--~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
+. ++++++++|.+.. ... ....|+++|+||+|+...+... .....+. ......
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~----~~~~~~~--------~~~~~~ 312 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLE----EIEASVL--------EEGGEE 312 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHH----HHHHHHH--------hhcccc
Confidence 33 7999999999874 111 1347999999999998653221 1111111 112333
Q ss_pred EEEeccccCCCHHHHHHHHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
.+.+|+..+.+++.+-+.+...
T Consensus 313 ~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 313 PLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred ccceeeeehhhHHHHHHHHHHH
Confidence 5678999999988877766654
No 377
>CHL00071 tufA elongation factor Tu
Probab=99.67 E-value=8.8e-16 Score=167.00 Aligned_cols=145 Identities=23% Similarity=0.234 Sum_probs=103.1
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCce---------------eecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccc
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRV---------------LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 420 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~---------------~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~ 420 (640)
..++|+++|++|+|||||+++|++.... ......|+|++.....++.++.++.++||||+.++
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~-- 88 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY-- 88 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH--
Confidence 4589999999999999999999975211 12233789999877777778889999999996432
Q ss_pred cCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCc-EEEEEeCCCCCCCccchHHHHHHHHHcHHH
Q 006555 421 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQE 489 (640)
Q Consensus 421 ~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p-~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~ 489 (640)
...+...+..+|++++|+|+.++ .....++| +|+++||||+.+.. +.++.+.+++...
T Consensus 89 --------~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~---~~~~~~~~~l~~~ 157 (409)
T CHL00071 89 --------VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDE---ELLELVELEVREL 157 (409)
T ss_pred --------HHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHH---HHHHHHHHHHHHH
Confidence 13345677789999999999864 23346888 77899999997542 2333343344433
Q ss_pred HHhhCCCCCCCcEEEeccccCCCH
Q 006555 490 IQTVIPQVTGIPVVFTSALEGRGR 513 (640)
Q Consensus 490 ~~~~~~~~~~~~~v~iSAk~g~gv 513 (640)
+...-.....+|++++||++|.|+
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 158 LSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHhCCCCCcceEEEcchhhcccc
Confidence 333211122479999999999875
No 378
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=7.3e-17 Score=144.58 Aligned_cols=163 Identities=21% Similarity=0.230 Sum_probs=125.9
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEEC-----------CeeEEEEeCCCCccccCccc
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG-----------DLRFKVLDSAGLETEATSGS 221 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~-----------~~~~~liDTpG~~~~~~~~~ 221 (640)
+.+...+|++||||||++-+.+..++. .+.-.++..|.....+-++ ...+++|||+|++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~---~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQE------- 78 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFN---TQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQE------- 78 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCccc---ceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHH-------
Confidence 446778899999999999999876541 1111123334443333321 1368999999999
Q ss_pred hHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHH-----hCCCCcEEEEecCCCCCcCCccchHHHHHHHHh
Q 006555 222 ILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRK-----HAPQIKPIVAMNKCESLHNGTGSLAGAAAESLM 296 (640)
Q Consensus 222 ~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~-----~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~ 296 (640)
++...+...+++|-..++++|.++..++. ++.+|+.. .+.+.-+|+++||+|+.+.+.+....+.+.+.+
T Consensus 79 ---RFRSLTTAFfRDAMGFlLiFDlT~eqSFL--nvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~k 153 (219)
T KOG0081|consen 79 ---RFRSLTTAFFRDAMGFLLIFDLTSEQSFL--NVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADK 153 (219)
T ss_pred ---HHHHHHHHHHHhhccceEEEeccchHHHH--HHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHH
Confidence 88899999999999999999998766665 45555544 244667899999999999888888888888899
Q ss_pred cCCCCcEEeeccCCCChhHHHHHhccchHHHHhhh
Q 006555 297 LGFGDPIAISAETGLGMTELYEALRPSVEDYMLRV 331 (640)
Q Consensus 297 ~g~~~~i~iSA~~g~gi~eL~~~I~~~l~~~~~~~ 331 (640)
+|+ ++|++||-+|.|+++..+.+.+.+.+.|.+.
T Consensus 154 ygl-PYfETSA~tg~Nv~kave~LldlvM~Rie~~ 187 (219)
T KOG0081|consen 154 YGL-PYFETSACTGTNVEKAVELLLDLVMKRIEQC 187 (219)
T ss_pred hCC-CeeeeccccCcCHHHHHHHHHHHHHHHHHHH
Confidence 999 8999999999999999999988887766554
No 379
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.66 E-value=4.3e-16 Score=151.83 Aligned_cols=147 Identities=21% Similarity=0.243 Sum_probs=114.0
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeE--EEEEEeCCCCcccccCCchhhHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSRK 434 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~ 434 (640)
..||+++|.+|||||+|+.++++.. .+..+.+|..|.+...+.+++.. +.|+||+|+.++ +.++ ..
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~--f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~---------~~~~-~~ 70 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGR--FVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEF---------SAMR-DL 70 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccc--cccccCCCccccceEEEEECCEEEEEEEEcCCCcccC---------hHHH-HH
Confidence 4699999999999999999999763 45567777778888888888764 569999994333 2233 35
Q ss_pred HHhhccEEEEEecccHH-----------HHH----HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCC
Q 006555 435 NLMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 499 (640)
Q Consensus 435 ~i~~advvllVvDa~~~-----------~~~----~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 499 (640)
+++.+|++++||++++. ++. ....|+|+|+||+|+... +.+..+.++.++....
T Consensus 71 ~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~-----------R~V~~eeg~~la~~~~ 139 (196)
T KOG0395|consen 71 YIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE-----------RQVSEEEGKALARSWG 139 (196)
T ss_pred hhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc-----------cccCHHHHHHHHHhcC
Confidence 78899999999999986 111 135799999999999864 2333444444455667
Q ss_pred CcEEEeccccCCCHHHHHHHHHHHHHH
Q 006555 500 IPVVFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 500 ~~~v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
++++++||+.+.+++++|..+.+....
T Consensus 140 ~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 140 CAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred CcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 899999999999999999999987665
No 380
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.66 E-value=4.6e-17 Score=145.76 Aligned_cols=147 Identities=18% Similarity=0.216 Sum_probs=102.2
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHH
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 433 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 433 (640)
-.+|++++|...||||||+-++... .+........-.......+.+.+. .+.||||+|+.+++. .++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~En-kFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHA-LGP--------- 80 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVEN-KFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHA-LGP--------- 80 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHh-hcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhc-cCc---------
Confidence 3589999999999999999999843 333333222222233334444444 567999999876641 111
Q ss_pred HHHhhccEEEEEecccHH--------------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCC
Q 006555 434 KNLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 499 (640)
Q Consensus 434 ~~i~~advvllVvDa~~~--------------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 499 (640)
-|+++++++|+|||+++. ..+...+.++||+||+||.+. +.+..+.++.++..-+
T Consensus 81 IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEee-----------R~Vt~qeAe~YAesvG 149 (218)
T KOG0088|consen 81 IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEE-----------RQVTRQEAEAYAESVG 149 (218)
T ss_pred eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHh-----------hhhhHHHHHHHHHhhc
Confidence 366789999999999986 112235678999999999765 2333444444445557
Q ss_pred CcEEEeccccCCCHHHHHHHHHHHH
Q 006555 500 IPVVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 500 ~~~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
+.++++||+.+.||.++|+.+....
T Consensus 150 A~y~eTSAk~N~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 150 ALYMETSAKDNVGISELFESLTAKM 174 (218)
T ss_pred hhheecccccccCHHHHHHHHHHHH
Confidence 7899999999999999999886543
No 381
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.66 E-value=3.5e-16 Score=156.87 Aligned_cols=144 Identities=28% Similarity=0.318 Sum_probs=111.6
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccc-cCCchhhHHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKNL 436 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~-~~~~~~~~~~~~~~~i 436 (640)
-+|++||.|+||||||+|+|++.. +.+.++++||..++.+.++|+|.+++|+|+||+..... ..+.. .+.+..+
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG----~~vlsv~ 138 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRG----RQVLSVA 138 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCC-ccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCc----ceeeeee
Confidence 589999999999999999999774 78899999999999999999999999999999987622 11111 2234566
Q ss_pred hhccEEEEEecccHH-----------------------------------------------------------------
Q 006555 437 MRAHVVALVLDAEEV----------------------------------------------------------------- 451 (640)
Q Consensus 437 ~~advvllVvDa~~~----------------------------------------------------------------- 451 (640)
+.||.+++|+|+...
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence 789999999998732
Q ss_pred ------------HHH---HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEeccccCCCHHHH
Q 006555 452 ------------RAV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAV 516 (640)
Q Consensus 452 ------------~~~---~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g~gv~~l 516 (640)
..+ ...+|+++|+||+|+...++ ++.+. + ....+++||+.+.|+++|
T Consensus 219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~----~~~l~--------~------~~~~v~isa~~~~nld~L 280 (365)
T COG1163 219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEE----LERLA--------R------KPNSVPISAKKGINLDEL 280 (365)
T ss_pred EEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHH----HHHHH--------h------ccceEEEecccCCCHHHH
Confidence 011 12579999999999987421 12111 1 126899999999999999
Q ss_pred HHHHHHHH
Q 006555 517 MHQVIDTY 524 (640)
Q Consensus 517 ~~~i~~~~ 524 (640)
.+.+.+.+
T Consensus 281 ~e~i~~~L 288 (365)
T COG1163 281 KERIWDVL 288 (365)
T ss_pred HHHHHHhh
Confidence 98887653
No 382
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.66 E-value=7.2e-17 Score=140.45 Aligned_cols=156 Identities=18% Similarity=0.251 Sum_probs=119.2
Q ss_pred EEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHHHHHHh
Q 006555 158 IIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTANVLA 235 (640)
Q Consensus 158 lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 235 (640)
++|++++|||+|+-++-.. +......-+++..|.....++.++ .++++|||+|++ ++...+..|++
T Consensus 2 llgds~~gktcllir~kdg--afl~~~fistvgid~rnkli~~~~~kvklqiwdtagqe----------rfrsvt~ayyr 69 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDG--AFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQE----------RFRSVTHAYYR 69 (192)
T ss_pred ccccCccCceEEEEEeccC--ceecCceeeeeeeccccceeccCCcEEEEEEeeccchH----------HHhhhhHhhhc
Confidence 6899999999998877433 222222223355666666666666 478999999999 88899999999
Q ss_pred ccceEEEEeecCCCCChhhH-HHHHHHHHh-CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCCh
Q 006555 236 KTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 313 (640)
Q Consensus 236 ~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~gi 313 (640)
.||.+++++|+.+..++++- .++..+.+. .....+++++||||+..++.+..++....+...|+ +.+++||++|.|+
T Consensus 70 da~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~i-pfmetsaktg~nv 148 (192)
T KOG0083|consen 70 DADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGI-PFMETSAKTGFNV 148 (192)
T ss_pred ccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCC-CceeccccccccH
Confidence 99999999999998888852 233333332 22567899999999988777766666666677777 7899999999999
Q ss_pred hHHHHHhccchHH
Q 006555 314 TELYEALRPSVED 326 (640)
Q Consensus 314 ~eL~~~I~~~l~~ 326 (640)
+-.+-.|.+.+.+
T Consensus 149 d~af~~ia~~l~k 161 (192)
T KOG0083|consen 149 DLAFLAIAEELKK 161 (192)
T ss_pred hHHHHHHHHHHHH
Confidence 9999988876654
No 383
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.66 E-value=6.4e-15 Score=157.67 Aligned_cols=153 Identities=16% Similarity=0.104 Sum_probs=102.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 233 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 233 (640)
-+|+|||+.|||||||+-+|+++... ...|.. ..+-.....+..+.....++||+.-. +........
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef~--~~VP~r-l~~i~IPadvtPe~vpt~ivD~ss~~----------~~~~~l~~E 76 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEFV--DAVPRR-LPRILIPADVTPENVPTSIVDTSSDS----------DDRLCLRKE 76 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhcc--cccccc-CCccccCCccCcCcCceEEEeccccc----------chhHHHHHH
Confidence 38999999999999999999987542 222210 11111113333456678999998544 222444677
Q ss_pred HhccceEEEEeecCCCCChhh--HHHHHHHHHhC---CCCcEEEEecCCCCCcCCccchH----HHHHHHHhcCCCCcEE
Q 006555 234 LAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKHA---PQIKPIVAMNKCESLHNGTGSLA----GAAAESLMLGFGDPIA 304 (640)
Q Consensus 234 ~~~ad~vl~VvD~s~~~~~~~--~~~~~~L~~~~---~~~p~ilV~NK~Dl~~~~~~~~~----~~~~~~~~~g~~~~i~ 304 (640)
++.||+|++|++++++.+.+. ..|+-.+++.. ...|+|+|+||+|+........+ .....+.+ .+.+++
T Consensus 77 irkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~E--iEtcie 154 (625)
T KOG1707|consen 77 IRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAE--IETCIE 154 (625)
T ss_pred HhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHH--HHHHHh
Confidence 899999999999988665554 22445555554 57999999999999876543112 12222322 246789
Q ss_pred eeccCCCChhHHHHHhc
Q 006555 305 ISAETGLGMTELYEALR 321 (640)
Q Consensus 305 iSA~~g~gi~eL~~~I~ 321 (640)
+||++-.++.|++....
T Consensus 155 cSA~~~~n~~e~fYyaq 171 (625)
T KOG1707|consen 155 CSALTLANVSELFYYAQ 171 (625)
T ss_pred hhhhhhhhhHhhhhhhh
Confidence 99999999888887654
No 384
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.66 E-value=1e-15 Score=160.56 Aligned_cols=169 Identities=22% Similarity=0.304 Sum_probs=125.7
Q ss_pred HHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEE
Q 006555 225 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 304 (640)
Q Consensus 225 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~ 304 (640)
++..+..+.+...|+|+.|+|++++.+.....+.+++. ++|.++|+||+|+.+... .......+....-..++.
T Consensus 23 k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~----~k~~i~vlNK~DL~~~~~--~~~W~~~~~~~~~~~~~~ 96 (322)
T COG1161 23 KAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK----EKPKLLVLNKADLAPKEV--TKKWKKYFKKEEGIKPIF 96 (322)
T ss_pred HHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHc----cCCcEEEEehhhcCCHHH--HHHHHHHHHhcCCCccEE
Confidence 55677788899999999999999998888777666654 456699999999987533 233344444442226799
Q ss_pred eeccCCCChhHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEeCCCCchHHHHHHHhcCCcee
Q 006555 305 ISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVL 384 (640)
Q Consensus 305 iSA~~g~gi~eL~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKStL~n~l~~~~~~~ 384 (640)
+|++++.+...+..++....++.+.+.... ......++++++|.||||||||+|+|++.....
T Consensus 97 v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~-----------------~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~ 159 (322)
T COG1161 97 VSAKSRQGGKKIRKALEKLSEEKIKRLKKK-----------------GLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAK 159 (322)
T ss_pred EEeecccCccchHHHHHHHHHHHHHHHhhc-----------------CCCccceEEEEEcCCCCcHHHHHHHHhccccee
Confidence 999999998888876665543322221110 011234789999999999999999999999999
Q ss_pred ecCcccceeeeEEEEEEECCeEEEEEEeCCCCccc
Q 006555 385 VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 419 (640)
Q Consensus 385 ~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~ 419 (640)
+++.||+|.+.+..... ..+.|+||||+....
T Consensus 160 ~s~~PG~Tk~~q~i~~~---~~i~LlDtPGii~~~ 191 (322)
T COG1161 160 TSNRPGTTKGIQWIKLD---DGIYLLDTPGIIPPK 191 (322)
T ss_pred eCCCCceecceEEEEcC---CCeEEecCCCcCCCC
Confidence 99999999987766543 348999999987653
No 385
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.66 E-value=6.8e-16 Score=152.07 Aligned_cols=150 Identities=21% Similarity=0.232 Sum_probs=93.1
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCc--eeecCcccceeeeEEEEEEEC---------------------------C----
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDR--VLVGPEAGLTRDSVRVHFEYQ---------------------------G---- 404 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~--~~~~~~~gtT~d~~~~~~~~~---------------------------~---- 404 (640)
++|+++|+.++|||||+.+|.+... ....-..|.|.......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4689999999999999999986521 111111122322221111111 3
Q ss_pred --eEEEEEEeCCCCcccccCCchhhHHHHHHHHHhhccEEEEEecccHH-----------HHHHcC-CcEEEEEeCCCCC
Q 006555 405 --RTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------RAVEEG-RGLVVIVNKMDLL 470 (640)
Q Consensus 405 --~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~advvllVvDa~~~-----------~~~~~~-~p~Ilv~NK~Dl~ 470 (640)
..+.||||||+.+ + ...+..++..+|++++|+|++++ .....+ .|+|+|+||+|+.
T Consensus 81 ~~~~i~~iDtPG~~~---------~-~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~ 150 (203)
T cd01888 81 LVRHVSFVDCPGHEI---------L-MATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLV 150 (203)
T ss_pred cccEEEEEECCChHH---------H-HHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhcc
Confidence 6889999999532 2 23445667789999999999862 111233 4799999999997
Q ss_pred CCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEeccccCCCHHHHHHHHHHH
Q 006555 471 SGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 471 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
........++.+. ..+... ...+.+++++||++|.|++++++.+.+.
T Consensus 151 ~~~~~~~~~~~i~----~~~~~~--~~~~~~i~~vSA~~g~gi~~L~~~l~~~ 197 (203)
T cd01888 151 KEEQALENYEQIK----KFVKGT--IAENAPIIPISAQLKYNIDVLLEYIVKK 197 (203)
T ss_pred CHHHHHHHHHHHH----HHHhcc--ccCCCcEEEEeCCCCCCHHHHHHHHHHh
Confidence 5422111112221 111111 1235689999999999999999888753
No 386
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.66 E-value=5.5e-16 Score=150.69 Aligned_cols=154 Identities=20% Similarity=0.212 Sum_probs=95.9
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
.||+++|.+|+|||||++++..... ...+..+..+.....+.+++. .+.+|||||+..... .. ...
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~---------~~-~~~ 69 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEF--PEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYER---------LR-PLS 69 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcccceEEEEEEECCEEEEEEEEECCCChhccc---------cc-hhh
Confidence 4899999999999999999985432 122223334444445556654 467999999754321 00 124
Q ss_pred HhhccEEEEEecccHH-----------H---HHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCC-C
Q 006555 436 LMRAHVVALVLDAEEV-----------R---AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG-I 500 (640)
Q Consensus 436 i~~advvllVvDa~~~-----------~---~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~ 500 (640)
+..+|++++|+|.++. . ......|+|+|+||+|+.......+. ....+.+..+..+.++...+ .
T Consensus 70 ~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 148 (187)
T cd04129 70 YSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEE-YRTQRFVPIQQGKRVAKEIGAK 148 (187)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccc-cccCCcCCHHHHHHHHHHhCCc
Confidence 5689999999999864 0 11236899999999998543110000 00000111111111112223 4
Q ss_pred cEEEeccccCCCHHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
+++++||++|.|++++|+.+.+..
T Consensus 149 ~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 149 KYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred EEEEccCCCCCCHHHHHHHHHHHH
Confidence 799999999999999999998754
No 387
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.66 E-value=1.6e-15 Score=138.18 Aligned_cols=141 Identities=19% Similarity=0.184 Sum_probs=104.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 233 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 233 (640)
.+|.+||.+++|||||+++|.+.... .. .|....+ .+ .+|||||-.-..+ .+.......
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~-----~~--KTq~i~~-----~~---~~IDTPGEyiE~~------~~y~aLi~t 60 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR-----YK--KTQAIEY-----YD---NTIDTPGEYIENP------RFYHALIVT 60 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC-----cC--ccceeEe-----cc---cEEECChhheeCH------HHHHHHHHH
Confidence 37999999999999999999986431 11 3444432 22 4599999763322 455556677
Q ss_pred HhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCCh
Q 006555 234 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 313 (640)
Q Consensus 234 ~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~gi 313 (640)
..+||+|++|.|++++.......+... . ++|+|=|+||+|+..+ ....+.....+...|...+|++|+.+|+|+
T Consensus 61 a~dad~V~ll~dat~~~~~~pP~fa~~---f--~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi 134 (143)
T PF10662_consen 61 AQDADVVLLLQDATEPRSVFPPGFASM---F--NKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGI 134 (143)
T ss_pred HhhCCEEEEEecCCCCCccCCchhhcc---c--CCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCH
Confidence 789999999999998765444444332 2 6799999999999842 223455667788889999999999999999
Q ss_pred hHHHHHhc
Q 006555 314 TELYEALR 321 (640)
Q Consensus 314 ~eL~~~I~ 321 (640)
++|.+.|.
T Consensus 135 ~eL~~~L~ 142 (143)
T PF10662_consen 135 EELKDYLE 142 (143)
T ss_pred HHHHHHHh
Confidence 99999875
No 388
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.65 E-value=2.8e-15 Score=149.04 Aligned_cols=158 Identities=20% Similarity=0.233 Sum_probs=106.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEE--CCeeEEEEeCCCCccccCccchHHHHHHH
Q 006555 152 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGM 229 (640)
Q Consensus 152 ~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 229 (640)
...+|+++|.+|||||||+++++........ .+. ...+.....+.. +...+.+|||+|.. ++...
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~i~i~~~Dt~g~~----------~~~~~ 74 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKY-IPT--LGVEVHPLKFYTNCGPICFNVWDTAGQE----------KFGGL 74 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCC-CCc--cceEEEEEEEEECCeEEEEEEEECCCch----------hhhhh
Confidence 3469999999999999999877654431111 111 222222222222 34689999999986 33344
Q ss_pred HHHHHhccceEEEEeecCCCCChhhH-HHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeecc
Q 006555 230 TANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 308 (640)
Q Consensus 230 ~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~ 308 (640)
...++..++++++|+|+++..+..+. .+...+.+...+.|+++|+||+|+..... . ..........+. .++++||+
T Consensus 75 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~-~-~~~~~~~~~~~~-~~~e~Sa~ 151 (215)
T PTZ00132 75 RDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQV-K-ARQITFHRKKNL-QYYDISAK 151 (215)
T ss_pred hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccC-C-HHHHHHHHHcCC-EEEEEeCC
Confidence 55678899999999999987766542 23333333456789999999999864322 1 222233444555 67999999
Q ss_pred CCCChhHHHHHhccchH
Q 006555 309 TGLGMTELYEALRPSVE 325 (640)
Q Consensus 309 ~g~gi~eL~~~I~~~l~ 325 (640)
+|.|+++++..|...+.
T Consensus 152 ~~~~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 152 SNYNFEKPFLWLARRLT 168 (215)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999998887653
No 389
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.65 E-value=2e-15 Score=170.64 Aligned_cols=160 Identities=21% Similarity=0.285 Sum_probs=110.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCcee--------ecCCC----CCceeeeeEEEEEEEC-----CeeEEEEeCCCCcc
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREAL--------VYNTP----DDHVTRDIREGLAKLG-----DLRFKVLDSAGLET 215 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~--------v~~~~----~~~tT~~~~~~~~~~~-----~~~~~liDTpG~~~ 215 (640)
+..|+|+|+.++|||||+.+|+.....+ +.+.. ..+.|.......+.+. +..+.||||||+.
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~- 85 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV- 85 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH-
Confidence 4689999999999999999998642211 11110 0114444333334332 5789999999998
Q ss_pred ccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHH
Q 006555 216 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESL 295 (640)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~ 295 (640)
++...+..+++.+|++|+|+|++++....+...+.++... +.|+++|+||+|+........... ...
T Consensus 86 ---------dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~--~lpiIvViNKiDl~~a~~~~v~~e--i~~ 152 (600)
T PRK05433 86 ---------DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN--DLEIIPVLNKIDLPAADPERVKQE--IED 152 (600)
T ss_pred ---------HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC--CCCEEEEEECCCCCcccHHHHHHH--HHH
Confidence 5556667789999999999999998877665544444433 789999999999865322111111 122
Q ss_pred hcCCC--CcEEeeccCCCChhHHHHHhccchHH
Q 006555 296 MLGFG--DPIAISAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 296 ~~g~~--~~i~iSA~~g~gi~eL~~~I~~~l~~ 326 (640)
.+++. +++++||++|.|+++|++.|.+.++.
T Consensus 153 ~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 153 VIGIDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred HhCCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 24442 47999999999999999999887754
No 390
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.65 E-value=1.1e-15 Score=136.65 Aligned_cols=107 Identities=34% Similarity=0.553 Sum_probs=85.7
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHHhh
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 438 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 438 (640)
+|+++|.+|+|||||+|+|++.+...+++.+++|++.....+.+++..+.++||||+.+......... ....+.+.+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~-~~~~~~~~~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGK-EIRKFLEQISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHH-HHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHH-HHHHHHHHHHH
Confidence 68999999999999999999977788999999999997778889999999999999876521111001 22345566788
Q ss_pred ccEEEEEecccHH---------HHHHcCCcEEEEEeC
Q 006555 439 AHVVALVLDAEEV---------RAVEEGRGLVVIVNK 466 (640)
Q Consensus 439 advvllVvDa~~~---------~~~~~~~p~Ilv~NK 466 (640)
+|++++|+|+++. ..++.++|+++|+||
T Consensus 80 ~d~ii~vv~~~~~~~~~~~~~~~~l~~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASNPITEDDKNILRELKNKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTSHSHHHHHHHHHHHHTTSEEEEEEES
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHhcCCCEEEEEcC
Confidence 9999999998764 223478999999998
No 391
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.65 E-value=2.7e-16 Score=141.76 Aligned_cols=149 Identities=22% Similarity=0.224 Sum_probs=111.7
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEE-CC--eEEEEEEeCCCCcccccCCchhhHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY-QG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 433 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~-~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 433 (640)
++++.++|++.||||+|+..++....... .-|.+.+|.....++. .| .+++||||+|+.++. ..+.
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfael-sdptvgvdffarlie~~pg~riklqlwdtagqerfr----------sitk 76 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAEL-SDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFR----------SITK 76 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCccccc-CCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHH----------HHHH
Confidence 47899999999999999999996543332 2444555554444444 23 377899999976553 4577
Q ss_pred HHHhhccEEEEEecccHH-------HHH-------H-cCCc-EEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCC
Q 006555 434 KNLMRAHVVALVLDAEEV-------RAV-------E-EGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 497 (640)
Q Consensus 434 ~~i~~advvllVvDa~~~-------~~~-------~-~~~p-~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 497 (640)
.|++++-++++|+|.++. .++ . ..++ ..+|+.|+||... +++..+.++.++..
T Consensus 77 syyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq-----------RqVt~EEaEklAa~ 145 (213)
T KOG0091|consen 77 SYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ-----------RQVTAEEAEKLAAS 145 (213)
T ss_pred HHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh-----------ccccHHHHHHHHHh
Confidence 899999999999999986 111 1 2333 5689999999865 45667777777778
Q ss_pred CCCcEEEeccccCCCHHHHHHHHHHHHHHH
Q 006555 498 TGIPVVFTSALEGRGRIAVMHQVIDTYQKW 527 (640)
Q Consensus 498 ~~~~~v~iSAk~g~gv~~l~~~i~~~~~~~ 527 (640)
.+..++++||++|.||++.|.-+.+.+...
T Consensus 146 hgM~FVETSak~g~NVeEAF~mlaqeIf~~ 175 (213)
T KOG0091|consen 146 HGMAFVETSAKNGCNVEEAFDMLAQEIFQA 175 (213)
T ss_pred cCceEEEecccCCCcHHHHHHHHHHHHHHH
Confidence 899999999999999999999888765543
No 392
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.65 E-value=2.3e-15 Score=144.76 Aligned_cols=147 Identities=20% Similarity=0.249 Sum_probs=104.6
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+..+|+++|.+|+||||++++|.......+.|+.|.. ...+.+++..+.+||.+|...... .+..+
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~----~~~i~~~~~~~~~~d~gG~~~~~~----------~w~~y 78 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFN----IEEIKYKGYSLTIWDLGGQESFRP----------LWKSY 78 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEE----EEEEEETTEEEEEEEESSSGGGGG----------GGGGG
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccccCcccccc----cceeeeCcEEEEEEeccccccccc----------cceee
Confidence 4579999999999999999999976544444444433 345677999999999999644321 22356
Q ss_pred HhhccEEEEEecccHH-----------HH----HHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 436 LMRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 436 i~~advvllVvDa~~~-----------~~----~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
+.++|++|+|+|+++. .. ...++|++|++||.|+.+.....++. +.+. + ..+......
T Consensus 79 ~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~----~~l~--l-~~l~~~~~~ 151 (175)
T PF00025_consen 79 FQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIK----EYLG--L-EKLKNKRPW 151 (175)
T ss_dssp HTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHH----HHTT--G-GGTTSSSCE
T ss_pred ccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHH----hhhh--h-hhcccCCce
Confidence 6789999999999975 11 12478999999999997654322221 1111 0 112223456
Q ss_pred cEEEeccccCCCHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
.++.+||++|+|+.+.+++|.+.
T Consensus 152 ~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 152 SVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHH
T ss_pred EEEeeeccCCcCHHHHHHHHHhc
Confidence 78999999999999999999875
No 393
>PRK12736 elongation factor Tu; Reviewed
Probab=99.65 E-value=1.4e-15 Score=164.71 Aligned_cols=144 Identities=26% Similarity=0.280 Sum_probs=98.9
Q ss_pred cCCceEEEEeCCCCchHHHHHHHhcCCc------e---------eecCcccceeeeEEEEEEECCeEEEEEEeCCCCccc
Q 006555 355 KLPLQLAIVGRPNVGKSTLLNALLQEDR------V---------LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 419 (640)
Q Consensus 355 ~~~~kv~ivG~~nvGKStL~n~l~~~~~------~---------~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~ 419 (640)
++.++|+++|++++|||||+++|++... . ......|+|++.....+..++.++.+|||||+.++
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f- 88 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY- 88 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH-
Confidence 3458999999999999999999986311 1 11125689999877777777889999999996432
Q ss_pred ccCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCc-EEEEEeCCCCCCCccchHHHHHHHHHcHH
Q 006555 420 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQ 488 (640)
Q Consensus 420 ~~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p-~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~ 488 (640)
+ ..+...+..+|++++|+|++++ .....++| +|+++||+|+.+.. +.++.+.+++..
T Consensus 89 -------~--~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~---~~~~~i~~~i~~ 156 (394)
T PRK12736 89 -------V--KNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDE---ELLELVEMEVRE 156 (394)
T ss_pred -------H--HHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchH---HHHHHHHHHHHH
Confidence 1 2334566789999999999864 23346888 67899999997432 223333333333
Q ss_pred HHHhhCCCCCCCcEEEeccccCC
Q 006555 489 EIQTVIPQVTGIPVVFTSALEGR 511 (640)
Q Consensus 489 ~~~~~~~~~~~~~~v~iSAk~g~ 511 (640)
.+...-.....+|++++||++|.
T Consensus 157 ~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 157 LLSEYDFPGDDIPVIRGSALKAL 179 (394)
T ss_pred HHHHhCCCcCCccEEEeeccccc
Confidence 33322111234799999999984
No 394
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=6.2e-16 Score=135.86 Aligned_cols=147 Identities=20% Similarity=0.182 Sum_probs=107.2
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCccc-ceeeeEEEEEEECCe--EEEEEEeCCCCcccccCCchhhHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAG-LTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 433 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~g-tT~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 433 (640)
-+|-.|+|+-|||||+|+.+++.... ..+.|. +.++.....+++.|+ +++||||+|+.++. .-++
T Consensus 11 ifkyiiigdmgvgkscllhqftekkf--madcphtigvefgtriievsgqkiklqiwdtagqerfr----------avtr 78 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR----------AVTR 78 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHH--hhcCCcccceecceeEEEecCcEEEEEEeecccHHHHH----------HHHH
Confidence 36889999999999999999986532 333342 334445556666665 56799999965442 3567
Q ss_pred HHHhhccEEEEEecccHH-------HH-------HHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCC
Q 006555 434 KNLMRAHVVALVLDAEEV-------RA-------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 499 (640)
Q Consensus 434 ~~i~~advvllVvDa~~~-------~~-------~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 499 (640)
.++++|-+.++|+|++.. .+ ...+..+++++||.||... +.+.-+.++.++..++
T Consensus 79 syyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~q-----------rdv~yeeak~faeeng 147 (215)
T KOG0097|consen 79 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQ-----------RDVTYEEAKEFAEENG 147 (215)
T ss_pred HHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhc-----------ccCcHHHHHHHHhhcC
Confidence 889999999999999876 11 1234568899999999765 2344455556666778
Q ss_pred CcEEEeccccCCCHHHHHHHHHHHHHH
Q 006555 500 IPVVFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 500 ~~~v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
.-++++|||+|+|+++.|-+..+.+.+
T Consensus 148 l~fle~saktg~nvedafle~akkiyq 174 (215)
T KOG0097|consen 148 LMFLEASAKTGQNVEDAFLETAKKIYQ 174 (215)
T ss_pred eEEEEecccccCcHHHHHHHHHHHHHH
Confidence 899999999999999988766654433
No 395
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.65 E-value=2.6e-15 Score=156.75 Aligned_cols=161 Identities=23% Similarity=0.285 Sum_probs=109.7
Q ss_pred EEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEE------------------------CCeeEEEEeCC
Q 006555 156 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL------------------------GDLRFKVLDSA 211 (640)
Q Consensus 156 V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~------------------------~~~~~~liDTp 211 (640)
|+|||.||||||||+|+|++.. +.+.+.|+ +|.+...+...+ .+.++++||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pf--tT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~a 77 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPF--TTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVA 77 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCC--ccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECC
Confidence 6899999999999999999876 46677777 888877765553 23579999999
Q ss_pred CCccccCccchHHHHHHHHHHHHhccceEEEEeecCCCC------------Ch-hhH-----HHHHH-------------
Q 006555 212 GLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL------------HP-LDL-----EVGKW------------- 260 (640)
Q Consensus 212 G~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~------------~~-~~~-----~~~~~------------- 260 (640)
|+......+.- ...+.+..+++||++++|+|++... .+ .+. ++..|
T Consensus 78 Glv~ga~~~~g---lg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~ 154 (318)
T cd01899 78 GLVPGAHEGKG---LGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIV 154 (318)
T ss_pred CCCCCccchhh---HHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99755443322 2245567899999999999997420 11 111 11110
Q ss_pred -------------------------------HHH----------------------hCCCCcEEEEecCCCCCcCCccch
Q 006555 261 -------------------------------LRK----------------------HAPQIKPIVAMNKCESLHNGTGSL 287 (640)
Q Consensus 261 -------------------------------L~~----------------------~~~~~p~ilV~NK~Dl~~~~~~~~ 287 (640)
|.. ....+|+|+|+||+|+..... .
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~--~ 232 (318)
T cd01899 155 RKADAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAEN--N 232 (318)
T ss_pred HHHhcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHH--H
Confidence 000 012579999999999754321 1
Q ss_pred HHHHHHHHhcCCCCcEEeeccCCCChhHHHH-HhccchHH
Q 006555 288 AGAAAESLMLGFGDPIAISAETGLGMTELYE-ALRPSVED 326 (640)
Q Consensus 288 ~~~~~~~~~~g~~~~i~iSA~~g~gi~eL~~-~I~~~l~~ 326 (640)
.. ..........++++||+.+.|+++|.+ .+.+.+++
T Consensus 233 ~~--~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 233 IS--KLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred HH--HHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 11 111233455789999999999999998 58888764
No 396
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.64 E-value=2.2e-15 Score=138.45 Aligned_cols=151 Identities=21% Similarity=0.189 Sum_probs=101.3
Q ss_pred EEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEE--CCeeEEEEeCCCCccccCccchHHHHHHHHHHHHh
Q 006555 158 IIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMTANVLA 235 (640)
Q Consensus 158 lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 235 (640)
++|.+|+|||||+|+|++..... ..... +..+........ .+..+.+|||||+. .........+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-~~~~~--t~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~~~ 67 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-EEYET--TIIDFYSKTIEVDGKKVKLQIWDTAGQE----------RFRSLRRLYYR 67 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-ccccc--chhheeeEEEEECCEEEEEEEEecCChH----------HHHhHHHHHhc
Confidence 58999999999999999875421 11111 223333333332 25789999999987 33334466788
Q ss_pred ccceEEEEeecCCCCChhhHHHH---HHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCCC
Q 006555 236 KTQFAIFMIDVRSGLHPLDLEVG---KWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLG 312 (640)
Q Consensus 236 ~ad~vl~VvD~s~~~~~~~~~~~---~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~g 312 (640)
.+|++++|+|.+++.+..+.... ........++|+++|+||+|+.....................+++++||.++.|
T Consensus 68 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 147 (157)
T cd00882 68 GADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGEN 147 (157)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCC
Confidence 99999999999987655543322 111223458999999999999765432222112233344445789999999999
Q ss_pred hhHHHHHhc
Q 006555 313 MTELYEALR 321 (640)
Q Consensus 313 i~eL~~~I~ 321 (640)
++++++.|.
T Consensus 148 i~~~~~~l~ 156 (157)
T cd00882 148 VEELFEELA 156 (157)
T ss_pred hHHHHHHHh
Confidence 999999875
No 397
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.64 E-value=3.2e-15 Score=150.50 Aligned_cols=115 Identities=19% Similarity=0.211 Sum_probs=88.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceee-----cCCC----------CCceeeeeEEEEEEECCeeEEEEeCCCCccccCc
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALV-----YNTP----------DDHVTRDIREGLAKLGDLRFKVLDSAGLETEATS 219 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v-----~~~~----------~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 219 (640)
.|+++|++|+|||||+++|+.....+. .... ....|.......+.+++.++.+|||||+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~----- 75 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHM----- 75 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCcc-----
Confidence 389999999999999999986432211 1100 01134555667778899999999999997
Q ss_pred cchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCc
Q 006555 220 GSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLH 281 (640)
Q Consensus 220 ~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~ 281 (640)
++...+..+++.+|++++|+|++++.......+.+.+++. ++|.++++||+|+..
T Consensus 76 -----~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~--~~P~iivvNK~D~~~ 130 (237)
T cd04168 76 -----DFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKL--NIPTIIFVNKIDRAG 130 (237)
T ss_pred -----chHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEEEEEECccccC
Confidence 4556677889999999999999998877666777777665 789999999999875
No 398
>PRK10218 GTP-binding protein; Provisional
Probab=99.64 E-value=4e-15 Score=167.40 Aligned_cols=160 Identities=23% Similarity=0.278 Sum_probs=118.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeec---------------CCCCCceeeeeEEEEEEECCeeEEEEeCCCCcccc
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVY---------------NTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 217 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~---------------~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 217 (640)
+.+|+|+|+.++|||||+++|+.....+.. ...| .|.......+.+++.++.+|||||+.
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erG--iTi~~~~~~i~~~~~~inliDTPG~~--- 79 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERG--ITILAKNTAIKWNDYRINIVDTPGHA--- 79 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCc--eEEEEEEEEEecCCEEEEEEECCCcc---
Confidence 468999999999999999999963222111 1123 67777777788899999999999998
Q ss_pred CccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchH-HHHHHHHh
Q 006555 218 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLA-GAAAESLM 296 (640)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~-~~~~~~~~ 296 (640)
++...+..+++.+|++++|+|+.++.......++..+... ++|.++|+||+|+......... +....+..
T Consensus 80 -------df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~--gip~IVviNKiD~~~a~~~~vl~ei~~l~~~ 150 (607)
T PRK10218 80 -------DFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY--GLKPIVVINKVDRPGARPDWVVDQVFDLFVN 150 (607)
T ss_pred -------hhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc--CCCEEEEEECcCCCCCchhHHHHHHHHHHhc
Confidence 4556677889999999999999998877776777666655 7899999999998754332221 22222222
Q ss_pred cCC------CCcEEeeccCCC----------ChhHHHHHhccchHH
Q 006555 297 LGF------GDPIAISAETGL----------GMTELYEALRPSVED 326 (640)
Q Consensus 297 ~g~------~~~i~iSA~~g~----------gi~eL~~~I~~~l~~ 326 (640)
++. .+++++||.+|. |+..|++.|.+.++.
T Consensus 151 l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 151 LDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred cCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 221 157999999998 588888888877754
No 399
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.64 E-value=1.9e-15 Score=170.57 Aligned_cols=147 Identities=27% Similarity=0.402 Sum_probs=102.4
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCcee--------ec------CcccceeeeEEEEEEE---CC--eEEEEEEeCCCCcc
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVL--------VG------PEAGLTRDSVRVHFEY---QG--RTVYLVDTAGWLQR 418 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~--------~~------~~~gtT~d~~~~~~~~---~~--~~~~liDTpG~~~~ 418 (640)
.+++++|++++|||||+++|+.....+ +. ...|+|.+.....+.+ ++ ..+.||||||+.++
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 379999999999999999998653211 11 2247888766665655 33 57889999998654
Q ss_pred cccCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHH
Q 006555 419 EKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQ 488 (640)
Q Consensus 419 ~~~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~ 488 (640)
. ..+..+++.||++|+|+|++++ .....++|+|+|+||+|+.... ..+..+
T Consensus 84 ~----------~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~-~~~~~~-------- 144 (595)
T TIGR01393 84 S----------YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSAD-PERVKK-------- 144 (595)
T ss_pred H----------HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccC-HHHHHH--------
Confidence 2 2344678899999999999874 2334689999999999986432 111111
Q ss_pred HHHhhCCCCCCCcEEEeccccCCCHHHHHHHHHHHH
Q 006555 489 EIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 489 ~~~~~~~~~~~~~~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
++...+. .....++++||++|.|++++|+.+.+.+
T Consensus 145 el~~~lg-~~~~~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 145 EIEEVIG-LDASEAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred HHHHHhC-CCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence 2222211 1123589999999999999999887653
No 400
>PRK00098 GTPase RsgA; Reviewed
Probab=99.64 E-value=1.4e-15 Score=158.32 Aligned_cols=145 Identities=28% Similarity=0.355 Sum_probs=99.9
Q ss_pred HHhccceEEEEeecCCCCChhhHHHHHHHHHh-CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCC
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGL 311 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~ 311 (640)
.+.++|.+++|+|++++..... .+.+|+... ..++|+++|+||+|+..+.. ........+...++ +++++||++|.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~-~idr~L~~~~~~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~-~v~~vSA~~g~ 153 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTD-LLDRFLVLAEANGIKPIIVLNKIDLLDDLE-EARELLALYRAIGY-DVLELSAKEGE 153 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCC-eEEEEeCCCCc
Confidence 3789999999999987644332 122333221 23789999999999963221 11223334455676 78999999999
Q ss_pred ChhHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEeCCCCchHHHHHHHhcCCceeecCccc-
Q 006555 312 GMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAG- 390 (640)
Q Consensus 312 gi~eL~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~g- 390 (640)
|+++|++.+.. ..++++|.+|||||||+|+|++.....++..++
T Consensus 154 gi~~L~~~l~g-----------------------------------k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~ 198 (298)
T PRK00098 154 GLDELKPLLAG-----------------------------------KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEA 198 (298)
T ss_pred cHHHHHhhccC-----------------------------------ceEEEECCCCCCHHHHHHHHhCCcCCCCcceecc
Confidence 99998876531 158999999999999999999876655555443
Q ss_pred ------ceeeeEEEEEEECCeEEEEEEeCCCCcc
Q 006555 391 ------LTRDSVRVHFEYQGRTVYLVDTAGWLQR 418 (640)
Q Consensus 391 ------tT~d~~~~~~~~~~~~~~liDTpG~~~~ 418 (640)
||+......+ ++ ...|+||||+...
T Consensus 199 ~~~G~htT~~~~~~~~--~~-~~~~~DtpG~~~~ 229 (298)
T PRK00098 199 LGRGKHTTTHVELYDL--PG-GGLLIDTPGFSSF 229 (298)
T ss_pred CCCCCcccccEEEEEc--CC-CcEEEECCCcCcc
Confidence 6655443333 22 2379999998754
No 401
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.63 E-value=9.8e-16 Score=153.02 Aligned_cols=146 Identities=25% Similarity=0.307 Sum_probs=110.9
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCe-EEEEEEeCCCCcccc-cCCchhhHHHHHHHHH
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR-TVYLVDTAGWLQREK-EKGPASLSVMQSRKNL 436 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~~liDTpG~~~~~~-~~~~~~~~~~~~~~~i 436 (640)
.|.+||.||+|||||+|+|.... ..+.+|+.||..+..+.+.+++. ++.+-|.||+.+... ..+.. ...++++
T Consensus 198 dvGLVG~PNAGKSTLL~als~AK-pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG----~~FLrHi 272 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAK-PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLG----YKFLRHI 272 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccC-CcccccceeeeccccceeeccccceeEeccCccccccccccCccc----HHHHHHH
Confidence 58999999999999999999765 58999999999999988888776 499999999987732 22221 3456899
Q ss_pred hhccEEEEEecccHH----------------HHH---HcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCC
Q 006555 437 MRAHVVALVLDAEEV----------------RAV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 497 (640)
Q Consensus 437 ~~advvllVvDa~~~----------------~~~---~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 497 (640)
++|+++++|+|.+.+ +.. ...+|.+||+||+|+.+.+ ...++ ++...+
T Consensus 273 ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae--~~~l~--------~L~~~l--- 339 (366)
T KOG1489|consen 273 ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE--KNLLS--------SLAKRL--- 339 (366)
T ss_pred HhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH--HHHHH--------HHHHHc---
Confidence 999999999999865 111 1478999999999996431 11112 222222
Q ss_pred CCCcEEEeccccCCCHHHHHHHHHH
Q 006555 498 TGIPVVFTSALEGRGRIAVMHQVID 522 (640)
Q Consensus 498 ~~~~~v~iSAk~g~gv~~l~~~i~~ 522 (640)
.+..++++||++++|+.++++.+.+
T Consensus 340 q~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 340 QNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred CCCcEEEeeeccccchHHHHHHHhh
Confidence 2335999999999999999887754
No 402
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.63 E-value=4.9e-15 Score=166.85 Aligned_cols=159 Identities=22% Similarity=0.343 Sum_probs=108.4
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEEC------C------------eeEEEEeCCCCc
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG------D------------LRFKVLDSAGLE 214 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~------~------------~~~~liDTpG~~ 214 (640)
.|.|+++|++|+|||||+|+|.+...+ ...++ ..|++......... + ..+.+|||||++
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~--~~~~g-~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVA--AKEAG-GITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccc--cCCCC-ceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 578999999999999999999876432 22332 14444322222111 0 127899999997
Q ss_pred cccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCcc---------
Q 006555 215 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTG--------- 285 (640)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~--------- 285 (640)
++..+....+..+|++++|+|++++......+.+.+++.. ++|+++++||+|+......
T Consensus 83 ----------~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~--~vpiIvviNK~D~~~~~~~~~~~~~~e~ 150 (586)
T PRK04004 83 ----------AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRR--KTPFVVAANKIDRIPGWKSTEDAPFLES 150 (586)
T ss_pred ----------HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc--CCCEEEEEECcCCchhhhhhcCchHHHH
Confidence 4555566678899999999999998877777777777665 7899999999998531100
Q ss_pred ----------chH----HHHHHHHhcCC--------------CCcEEeeccCCCChhHHHHHhccchHH
Q 006555 286 ----------SLA----GAAAESLMLGF--------------GDPIAISAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 286 ----------~~~----~~~~~~~~~g~--------------~~~i~iSA~~g~gi~eL~~~I~~~l~~ 326 (640)
... +....+...|+ -+++++||.+|.|+++|++.+.....+
T Consensus 151 ~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~ 219 (586)
T PRK04004 151 IEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQR 219 (586)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHH
Confidence 000 00112222232 256999999999999999988655444
No 403
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.63 E-value=1.3e-15 Score=146.56 Aligned_cols=153 Identities=20% Similarity=0.145 Sum_probs=107.0
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
..+|+++|..|+|||||+++|.......+. .|.......+...+..+.+||.+|.. .+......
T Consensus 14 ~~~ililGl~~sGKTtll~~l~~~~~~~~~------pT~g~~~~~i~~~~~~~~~~d~gG~~----------~~~~~w~~ 77 (175)
T PF00025_consen 14 EIKILILGLDGSGKTTLLNRLKNGEISETI------PTIGFNIEEIKYKGYSLTIWDLGGQE----------SFRPLWKS 77 (175)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHSSSEEEEE------EESSEEEEEEEETTEEEEEEEESSSG----------GGGGGGGG
T ss_pred EEEEEEECCCccchHHHHHHhhhccccccC------cccccccceeeeCcEEEEEEeccccc----------ccccccee
Confidence 358999999999999999999976543322 34455567778899999999999987 23344556
Q ss_pred HHhccceEEEEeecCCCCChhh-H-HHHHHHHH-hCCCCcEEEEecCCCCCcCCccchHHHHHHH--HhcC---CCCcEE
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLD-L-EVGKWLRK-HAPQIKPIVAMNKCESLHNGTGSLAGAAAES--LMLG---FGDPIA 304 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~-~-~~~~~L~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~--~~~g---~~~~i~ 304 (640)
++..+|+++||+|.++.....+ . ++.+.+.. ...++|+++++||.|+..... .++....+ ..+. --.++.
T Consensus 78 y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~--~~~i~~~l~l~~l~~~~~~~v~~ 155 (175)
T PF00025_consen 78 YFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMS--EEEIKEYLGLEKLKNKRPWSVFS 155 (175)
T ss_dssp GHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSST--HHHHHHHTTGGGTTSSSCEEEEE
T ss_pred eccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcch--hhHHHhhhhhhhcccCCceEEEe
Confidence 7889999999999997543332 2 22233322 234789999999999876433 22222111 2222 114588
Q ss_pred eeccCCCChhHHHHHhccc
Q 006555 305 ISAETGLGMTELYEALRPS 323 (640)
Q Consensus 305 iSA~~g~gi~eL~~~I~~~ 323 (640)
+||.+|+|+.|.+++|.+.
T Consensus 156 ~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 156 CSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp EBTTTTBTHHHHHHHHHHH
T ss_pred eeccCCcCHHHHHHHHHhc
Confidence 9999999999999998754
No 404
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=3.7e-15 Score=159.63 Aligned_cols=154 Identities=23% Similarity=0.304 Sum_probs=127.3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEEC---CeeEEEEeCCCCccccCccchHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG---DLRFKVLDSAGLETEATSGSILDRTAGM 229 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~ 229 (640)
.|.|+++|+-..|||||+.++-+.+++. ....| .|++....++..+ ...+.++||||++ .|..+
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~-~EaGG--ITQhIGA~~v~~~~~~~~~itFiDTPGHe----------AFt~m 71 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAA-GEAGG--ITQHIGAYQVPLDVIKIPGITFIDTPGHE----------AFTAM 71 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCcccc-ccCCc--eeeEeeeEEEEeccCCCceEEEEcCCcHH----------HHHHH
Confidence 5799999999999999999998876543 22233 9999999999984 4789999999998 66677
Q ss_pred HHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCC--------C
Q 006555 230 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFG--------D 301 (640)
Q Consensus 230 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~--------~ 301 (640)
..+-..-+|++++|+|++++..++..+-.+.++.. +.|+++++||+|..+.+. .....+..+.|+. .
T Consensus 72 RaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a--~vP~iVAiNKiDk~~~np---~~v~~el~~~gl~~E~~gg~v~ 146 (509)
T COG0532 72 RARGASVTDIAILVVAADDGVMPQTIEAINHAKAA--GVPIVVAINKIDKPEANP---DKVKQELQEYGLVPEEWGGDVI 146 (509)
T ss_pred HhcCCccccEEEEEEEccCCcchhHHHHHHHHHHC--CCCEEEEEecccCCCCCH---HHHHHHHHHcCCCHhhcCCceE
Confidence 77778889999999999999999999999999887 899999999999986543 3344455555542 3
Q ss_pred cEEeeccCCCChhHHHHHhccch
Q 006555 302 PIAISAETGLGMTELYEALRPSV 324 (640)
Q Consensus 302 ~i~iSA~~g~gi~eL~~~I~~~l 324 (640)
++++||++|+|+++|++.|.-.-
T Consensus 147 ~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 147 FVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred EEEeeccCCCCHHHHHHHHHHHH
Confidence 58999999999999999887543
No 405
>CHL00071 tufA elongation factor Tu
Probab=99.63 E-value=2.9e-15 Score=162.93 Aligned_cols=147 Identities=15% Similarity=0.071 Sum_probs=108.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCcee---------------ecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCcccc
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREAL---------------VYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 217 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~---------------v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 217 (640)
...|+++|++|+|||||+|+|++....+ .....| +|.+........++.++.++||||+.
T Consensus 12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg--~T~~~~~~~~~~~~~~~~~iDtPGh~--- 86 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARG--ITINTAHVEYETENRHYAHVDCPGHA--- 86 (409)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCC--EeEEccEEEEccCCeEEEEEECCChH---
Confidence 3589999999999999999999752211 011134 78887776777778899999999976
Q ss_pred CccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCc-EEEEecCCCCCcCCccc--h-HHHHHH
Q 006555 218 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTGS--L-AGAAAE 293 (640)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p-~ilV~NK~Dl~~~~~~~--~-~~~~~~ 293 (640)
++...+...+..+|++++|+|+..+....+.+.+..+... ++| +|+|+||+|+.+..+.. . .+....
T Consensus 87 -------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~ 157 (409)
T CHL00071 87 -------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV--GVPNIVVFLNKEDQVDDEELLELVELEVREL 157 (409)
T ss_pred -------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCEEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 5666667788999999999999999888888888877766 678 67899999997532211 1 122333
Q ss_pred HHhcCC----CCcEEeeccCCCCh
Q 006555 294 SLMLGF----GDPIAISAETGLGM 313 (640)
Q Consensus 294 ~~~~g~----~~~i~iSA~~g~gi 313 (640)
+...++ .+++++||.+|.++
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 158 LSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHhCCCCCcceEEEcchhhcccc
Confidence 444454 35799999999754
No 406
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.63 E-value=5.7e-15 Score=147.31 Aligned_cols=156 Identities=17% Similarity=0.149 Sum_probs=104.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCce------ee--c-----CCCCCc----------------------eeeeeEEEEEE
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREA------LV--Y-----NTPDDH----------------------VTRDIREGLAK 199 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~------~v--~-----~~~~~~----------------------tT~~~~~~~~~ 199 (640)
+|+++|..++|||||+++|+..... .. . ...|.+ .+.+.......
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999853220 00 0 000100 00000012334
Q ss_pred ECCeeEEEEeCCCCccccCccchHHHHHHHHHHHHh--ccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCC
Q 006555 200 LGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLA--KTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKC 277 (640)
Q Consensus 200 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~--~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~ 277 (640)
..+..+.++||||+. ++...+...+. .+|++++|+|++.+....+.+++.++... ++|+++|+||+
T Consensus 81 ~~~~~i~liDtpG~~----------~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~--~ip~ivvvNK~ 148 (224)
T cd04165 81 KSSKLVTFIDLAGHE----------RYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALAL--NIPVFVVVTKI 148 (224)
T ss_pred eCCcEEEEEECCCcH----------HHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCEEEEEECc
Confidence 567889999999987 44444555554 78999999999999999988999998877 78999999999
Q ss_pred CCCcCCccch-HHHH-HHHHhcC-------------------------CCCcEEeeccCCCChhHHHHHhcc
Q 006555 278 ESLHNGTGSL-AGAA-AESLMLG-------------------------FGDPIAISAETGLGMTELYEALRP 322 (640)
Q Consensus 278 Dl~~~~~~~~-~~~~-~~~~~~g-------------------------~~~~i~iSA~~g~gi~eL~~~I~~ 322 (640)
|+.+...... .... ..+...| ..+++.+||.+|+|+++|+..|..
T Consensus 149 D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 149 DLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred cccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 9875422111 1111 1111111 226789999999999999987753
No 407
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=4.8e-15 Score=156.97 Aligned_cols=158 Identities=25% Similarity=0.281 Sum_probs=129.5
Q ss_pred cccccCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEE-CCeeEEEEeCCCCccccCccchHHH
Q 006555 147 KIDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-GDLRFKVLDSAGLETEATSGSILDR 225 (640)
Q Consensus 147 ~~~~~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~ 225 (640)
.......|.|-|+|+...|||||+.+|-+..++.. ...| +|++.....+.. .|..+.+.||||+. .
T Consensus 147 ~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~-E~GG--ITQhIGAF~V~~p~G~~iTFLDTPGHa----------A 213 (683)
T KOG1145|consen 147 KLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAG-EAGG--ITQHIGAFTVTLPSGKSITFLDTPGHA----------A 213 (683)
T ss_pred hhcCCCCCeEEEeecccCChhhHHHHHhhCceehh-hcCC--ccceeceEEEecCCCCEEEEecCCcHH----------H
Confidence 33344678999999999999999999988766543 2334 999998887776 67899999999998 6
Q ss_pred HHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCC-----
Q 006555 226 TAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFG----- 300 (640)
Q Consensus 226 ~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~----- 300 (640)
|..|..+-+.-+|+|++|+.+++++.++..+.+++.+.. +.|+|+++||||.+... .+....++...|+.
T Consensus 214 F~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A--~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~G 288 (683)
T KOG1145|consen 214 FSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA--NVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLG 288 (683)
T ss_pred HHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhc--CCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcC
Confidence 778888888999999999999999999999988888877 89999999999987643 24444555555431
Q ss_pred ---CcEEeeccCCCChhHHHHHhcc
Q 006555 301 ---DPIAISAETGLGMTELYEALRP 322 (640)
Q Consensus 301 ---~~i~iSA~~g~gi~eL~~~I~~ 322 (640)
+++++||++|+|++.|.+++.-
T Consensus 289 GdVQvipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 289 GDVQVIPISALTGENLDLLEEAILL 313 (683)
T ss_pred CceeEEEeecccCCChHHHHHHHHH
Confidence 5699999999999999998764
No 408
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.63 E-value=5.3e-15 Score=166.65 Aligned_cols=159 Identities=20% Similarity=0.269 Sum_probs=118.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCcee-----ec----------CCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccC
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREAL-----VY----------NTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEAT 218 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~-----v~----------~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 218 (640)
..|+|+|+.++|||||+++|+.....+ +. ..-| +|.......+.+++.++.+|||||+.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerG--iTI~~~~~~v~~~~~kinlIDTPGh~---- 75 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERG--ITILAKNTAIRYNGTKINIVDTPGHA---- 75 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCC--ccEEeeeEEEEECCEEEEEEECCCHH----
Confidence 379999999999999999998532111 11 1123 67777777888999999999999997
Q ss_pred ccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccch-HHHHHHHHhc
Q 006555 219 SGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSL-AGAAAESLML 297 (640)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~-~~~~~~~~~~ 297 (640)
++......++..+|++++|+|+.++.......++..+... ++|.|+|+||+|+........ .+....+..+
T Consensus 76 ------DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~--~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~ 147 (594)
T TIGR01394 76 ------DFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL--GLKPIVVINKIDRPSARPDEVVDEVFDLFAEL 147 (594)
T ss_pred ------HHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC--CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhh
Confidence 5666778889999999999999988877777777777665 789999999999875432111 1222223222
Q ss_pred CC------CCcEEeeccCCC----------ChhHHHHHhccchHH
Q 006555 298 GF------GDPIAISAETGL----------GMTELYEALRPSVED 326 (640)
Q Consensus 298 g~------~~~i~iSA~~g~----------gi~eL~~~I~~~l~~ 326 (640)
+. -+++++||++|. |++.|++.|.+.++.
T Consensus 148 g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 148 GADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred ccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 22 157899999996 799999998887754
No 409
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.63 E-value=5.9e-15 Score=148.58 Aligned_cols=154 Identities=24% Similarity=0.336 Sum_probs=106.8
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceee-----------------cCcccceeeeEEEEEEECCeEEEEEEeCCCCccccc
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLV-----------------GPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE 421 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~-----------------~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~ 421 (640)
+|+++|++|+|||||+++|+.....+. ....|+|.+.....+.+++.++.+|||||+.++.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~-- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI-- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH--
Confidence 489999999999999999986432211 1123556666667788899999999999975442
Q ss_pred CCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcH----
Q 006555 422 KGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVP---- 487 (640)
Q Consensus 422 ~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~---- 487 (640)
..+..+++.+|++++|+|++++ .....++|+++++||+|+...+ ..+.++.+++.+.
T Consensus 79 --------~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~-~~~~~~~i~~~~~~~~~ 149 (237)
T cd04168 79 --------AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGAD-LEKVYQEIKEKLSSDIV 149 (237)
T ss_pred --------HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCC-HHHHHHHHHHHHCCCeE
Confidence 2345678899999999999875 2234689999999999987532 2233333322111
Q ss_pred ------------------------------------------------HHHHhhCCCCCCCcEEEeccccCCCHHHHHHH
Q 006555 488 ------------------------------------------------QEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQ 519 (640)
Q Consensus 488 ------------------------------------------------~~~~~~~~~~~~~~~v~iSAk~g~gv~~l~~~ 519 (640)
..+.+......-+|++..||.++.|+..|++.
T Consensus 150 ~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~ 229 (237)
T cd04168 150 PMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEG 229 (237)
T ss_pred EEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHH
Confidence 11111222334568888899999999999988
Q ss_pred HHHH
Q 006555 520 VIDT 523 (640)
Q Consensus 520 i~~~ 523 (640)
+.+.
T Consensus 230 ~~~~ 233 (237)
T cd04168 230 ITKL 233 (237)
T ss_pred HHHh
Confidence 8764
No 410
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.63 E-value=2.9e-15 Score=149.38 Aligned_cols=148 Identities=22% Similarity=0.245 Sum_probs=101.2
Q ss_pred EEEEeCCCCCHHHHHHHHHcCCcee------------------------ecCCC----CCceeeeeEEEEEEECCeeEEE
Q 006555 156 VMIIGRPNVGKSALFNRLIRRREAL------------------------VYNTP----DDHVTRDIREGLAKLGDLRFKV 207 (640)
Q Consensus 156 V~lvG~~nvGKSSLin~L~~~~~~~------------------------v~~~~----~~~tT~~~~~~~~~~~~~~~~l 207 (640)
|+++|.+++|||||+.+|+.....+ +.+.. ..++|++.....+.+++.++.+
T Consensus 2 v~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~l 81 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFTI 81 (219)
T ss_pred EEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEEE
Confidence 8999999999999999996321110 00110 1348899988999999999999
Q ss_pred EeCCCCccccCccchHHHHHHHHHHHHhccceEEEEeecCCC-------CChhhHHHHHHHHHhCCCCcEEEEecCCCCC
Q 006555 208 LDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSG-------LHPLDLEVGKWLRKHAPQIKPIVAMNKCESL 280 (640)
Q Consensus 208 iDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~-------~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~ 280 (640)
|||||+. ++.......+..+|++++|+|++++ ......+....+... ..+|+++|+||+|+.
T Consensus 82 iDtpG~~----------~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiivvNK~Dl~ 150 (219)
T cd01883 82 LDAPGHR----------DFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL-GVKQLIVAVNKMDDV 150 (219)
T ss_pred EECCChH----------HHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc-CCCeEEEEEEccccc
Confidence 9999986 4445556778899999999999984 223333444444333 236889999999998
Q ss_pred cCC--ccchHH----HHHHHHhcCC----CCcEEeeccCCCChh
Q 006555 281 HNG--TGSLAG----AAAESLMLGF----GDPIAISAETGLGMT 314 (640)
Q Consensus 281 ~~~--~~~~~~----~~~~~~~~g~----~~~i~iSA~~g~gi~ 314 (640)
... ...... ....+...++ .+++++||++|.|++
T Consensus 151 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 151 TVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 421 111111 1122344554 258999999999987
No 411
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.63 E-value=2.7e-15 Score=170.82 Aligned_cols=154 Identities=18% Similarity=0.260 Sum_probs=103.6
Q ss_pred cCCceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEE----CCeEEEEEEeCCCCcccccCCchhhHHH
Q 006555 355 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY----QGRTVYLVDTAGWLQREKEKGPASLSVM 430 (640)
Q Consensus 355 ~~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~ 430 (640)
.++..|+++|++|+|||||+++|++... ......|+|.+.....+.+ .+..+.||||||+..+ ..+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~-~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F---------~~m 311 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQI-AQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAF---------SSM 311 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccC-ccccCCccccccceEEEEEEecCCceEEEEEECCcHHHH---------HHH
Confidence 3457899999999999999999997643 3344567776544333333 3478999999996432 222
Q ss_pred HHHHHHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 431 QSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 431 ~~~~~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
...++..+|++|+|||++++ .....++|+|+|+||+|+.... .....+.+... ..+...+ ...+
T Consensus 312 -r~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~-~e~v~~eL~~~--~ll~e~~--g~~v 385 (742)
T CHL00189 312 -RSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANAN-TERIKQQLAKY--NLIPEKW--GGDT 385 (742)
T ss_pred -HHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccC-HHHHHHHHHHh--ccchHhh--CCCc
Confidence 23567789999999999874 2234689999999999997532 11111111110 0000000 1236
Q ss_pred cEEEeccccCCCHHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
+++++||++|.|++++++.+....
T Consensus 386 pvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 386 PMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred eEEEEECCCCCCHHHHHHhhhhhh
Confidence 899999999999999999887653
No 412
>PRK12735 elongation factor Tu; Reviewed
Probab=99.63 E-value=3.7e-15 Score=161.43 Aligned_cols=143 Identities=22% Similarity=0.258 Sum_probs=98.0
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcC------Cce---------eecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccc
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQE------DRV---------LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 420 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~------~~~---------~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~ 420 (640)
+.++|+++|++|+|||||+++|++. ... ......|+|.+.....++.++.++.|+||||+.++
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f-- 88 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY-- 88 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH--
Confidence 4589999999999999999999962 111 11225689999877777778889999999996422
Q ss_pred cCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEE-EEEeCCCCCCCccchHHHHHHHHHcHHH
Q 006555 421 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLV-VIVNKMDLLSGRQNSALYKRVKEAVPQE 489 (640)
Q Consensus 421 ~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~I-lv~NK~Dl~~~~~~~~~~~~~~~~v~~~ 489 (640)
...+...+..+|++++|+|+.++ .....++|.+ +++||+|+.+.. +.++.+.+++...
T Consensus 89 --------~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~---~~~~~~~~ei~~~ 157 (396)
T PRK12735 89 --------VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE---ELLELVEMEVREL 157 (396)
T ss_pred --------HHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchH---HHHHHHHHHHHHH
Confidence 13344667789999999999874 2234678866 579999997532 2233333333322
Q ss_pred HHhhCCC-CCCCcEEEeccccCCC
Q 006555 490 IQTVIPQ-VTGIPVVFTSALEGRG 512 (640)
Q Consensus 490 ~~~~~~~-~~~~~~v~iSAk~g~g 512 (640)
+.. +.. ...++++++||++|.|
T Consensus 158 l~~-~~~~~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 158 LSK-YDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HHH-cCCCcCceeEEecchhcccc
Confidence 222 111 1247899999999975
No 413
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=1.3e-14 Score=138.09 Aligned_cols=156 Identities=24% Similarity=0.285 Sum_probs=104.3
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCC-ceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCC-chhhHHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQED-RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKG-PASLSVMQSRK 434 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~-~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~-~~~~~~~~~~~ 434 (640)
..-|+++|++|||||||+|+|+++. -+.++.+||.|+.... +++++. +.++|.||..-...... .+... .....
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNf--f~~~~~-~~lVDlPGYGyAkv~k~~~e~w~-~~i~~ 99 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINF--FEVDDE-LRLVDLPGYGYAKVPKEVKEKWK-KLIEE 99 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEE--EEecCc-EEEEeCCCcccccCCHHHHHHHH-HHHHH
Confidence 4579999999999999999999965 4889999999997543 334333 88999999754422211 11111 11123
Q ss_pred HHh---hccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 435 NLM---RAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 435 ~i~---~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
|++ +-.++++++|+..+ .....++|++||+||+|.++..+....... +.+.+.......
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~--------v~~~l~~~~~~~ 171 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNK--------VAEELKKPPPDD 171 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHH--------HHHHhcCCCCcc
Confidence 443 24688889999865 234579999999999999876433222222 222121111112
Q ss_pred --EEEeccccCCCHHHHHHHHHHHH
Q 006555 502 --VVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 502 --~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
++..|+.++.|++++...|.+.+
T Consensus 172 ~~~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 172 QWVVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred ceEEEEecccccCHHHHHHHHHHHh
Confidence 88899999999999888777654
No 414
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.62 E-value=3.9e-15 Score=152.58 Aligned_cols=143 Identities=15% Similarity=0.109 Sum_probs=102.9
Q ss_pred EEEEeCCCCCHHHHHHHHHcCC-----ceeecC-------CC---CCceeeeeEEEEEEECCeeEEEEeCCCCccccCcc
Q 006555 156 VMIIGRPNVGKSALFNRLIRRR-----EALVYN-------TP---DDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSG 220 (640)
Q Consensus 156 V~lvG~~nvGKSSLin~L~~~~-----~~~v~~-------~~---~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 220 (640)
|+++|++|+|||||+++|+... ...+.+ .+ ..++|.+.....+.+++.++.+|||||+.
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~------ 75 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHV------ 75 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcH------
Confidence 8999999999999999997421 111211 00 12378888888889999999999999987
Q ss_pred chHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHH-HHHHhcCC
Q 006555 221 SILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAA-AESLMLGF 299 (640)
Q Consensus 221 ~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~-~~~~~~g~ 299 (640)
++...+..+++.+|++++|+|+..+....+..+++.++.. ++|.++++||+|+............ ..+....+
T Consensus 76 ----df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~--~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~ 149 (270)
T cd01886 76 ----DFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY--NVPRIAFVNKMDRTGADFFRVVEQIREKLGANPV 149 (270)
T ss_pred ----HHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCce
Confidence 4556677889999999999999999888877787777765 7899999999998753321111122 22222223
Q ss_pred CCcEEeeccCC
Q 006555 300 GDPIAISAETG 310 (640)
Q Consensus 300 ~~~i~iSA~~g 310 (640)
...+|+||..+
T Consensus 150 ~~~~Pisa~~~ 160 (270)
T cd01886 150 PLQLPIGEEDD 160 (270)
T ss_pred EEEeccccCCC
Confidence 34578888643
No 415
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.62 E-value=4e-15 Score=170.58 Aligned_cols=152 Identities=20% Similarity=0.218 Sum_probs=109.4
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecC----------CCC--------------------CceeeeeEEEEEEECC
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYN----------TPD--------------------DHVTRDIREGLAKLGD 202 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~----------~~~--------------------~~tT~~~~~~~~~~~~ 202 (640)
..+|+++|++|+|||||+|+|+....+++.. ..| .++|.+.......+++
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~ 103 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPK 103 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCC
Confidence 3589999999999999999999765444321 111 2256777777888888
Q ss_pred eeEEEEeCCCCccccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcC
Q 006555 203 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 282 (640)
Q Consensus 203 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~ 282 (640)
.++.++||||+. ++.......+..+|++++|+|+..+....+.+....+.... .+++|+|+||+|+.+.
T Consensus 104 ~~~~liDtPG~~----------~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~-~~~iivvvNK~D~~~~ 172 (632)
T PRK05506 104 RKFIVADTPGHE----------QYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLG-IRHVVLAVNKMDLVDY 172 (632)
T ss_pred ceEEEEECCChH----------HHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhC-CCeEEEEEEecccccc
Confidence 999999999986 34444455788999999999999988877766666665542 3578899999999753
Q ss_pred CccchHHHH----HHHHhcCCC--CcEEeeccCCCChhH
Q 006555 283 GTGSLAGAA----AESLMLGFG--DPIAISAETGLGMTE 315 (640)
Q Consensus 283 ~~~~~~~~~----~~~~~~g~~--~~i~iSA~~g~gi~e 315 (640)
......... .....+++. +++++||++|.|+++
T Consensus 173 ~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 173 DQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 221112121 122355663 489999999999985
No 416
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.62 E-value=7.1e-15 Score=164.89 Aligned_cols=157 Identities=18% Similarity=0.244 Sum_probs=96.4
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcc-cceeeeEEEEEEEC------------------CeEEEEEEeCCCCc
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA-GLTRDSVRVHFEYQ------------------GRTVYLVDTAGWLQ 417 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~-gtT~d~~~~~~~~~------------------~~~~~liDTpG~~~ 417 (640)
+.-|+++|++|+|||||+|+|++... ....+ |+|++.....+..+ ...+.+|||||+..
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v--~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAV--AKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccc--ccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 34699999999999999999997642 22333 35543222211111 12488999999643
Q ss_pred ccccCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCcc---chHHHH---H
Q 006555 418 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQ---NSALYK---R 481 (640)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~---~~~~~~---~ 481 (640)
+ ..+ ...+++.+|++++|+|++++ .....++|+|+++||+|+..... ....++ .
T Consensus 82 f---------~~l-~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak 151 (590)
T TIGR00491 82 F---------TNL-RKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSK 151 (590)
T ss_pred H---------HHH-HHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHh
Confidence 3 222 23466789999999999863 22346899999999999974210 000011 0
Q ss_pred HHHHc-----------HHHHHhh-C---------CCCCCCcEEEeccccCCCHHHHHHHHHHHHH
Q 006555 482 VKEAV-----------PQEIQTV-I---------PQVTGIPVVFTSALEGRGRIAVMHQVIDTYQ 525 (640)
Q Consensus 482 ~~~~v-----------~~~~~~~-~---------~~~~~~~~v~iSAk~g~gv~~l~~~i~~~~~ 525 (640)
..+.+ ..++.+. + .....++++++||++|+|++++++.+....+
T Consensus 152 ~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 152 QEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 00000 0111110 0 1223579999999999999999988765433
No 417
>PRK12736 elongation factor Tu; Reviewed
Probab=99.62 E-value=5.7e-15 Score=159.86 Aligned_cols=158 Identities=17% Similarity=0.113 Sum_probs=113.4
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCc------ee---------ecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCcccc
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRRE------AL---------VYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 217 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~------~~---------v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 217 (640)
...|+++|++++|||||+++|++... .. .....| +|.+........++.++.+|||||+.
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg--~T~~~~~~~~~~~~~~i~~iDtPGh~--- 86 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERG--ITINTAHVEYETEKRHYAHVDCPGHA--- 86 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcC--ccEEEEeeEecCCCcEEEEEECCCHH---
Confidence 35899999999999999999986311 00 011334 78887666666677899999999986
Q ss_pred CccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCc-EEEEecCCCCCcCCccc--h-HHHHHH
Q 006555 218 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTGS--L-AGAAAE 293 (640)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p-~ilV~NK~Dl~~~~~~~--~-~~~~~~ 293 (640)
++.......+..+|++++|+|++++....+.+.+.++... ++| +|+|+||+|+.+..+.. . .+....
T Consensus 87 -------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~ 157 (394)
T PRK12736 87 -------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV--GVPYLVVFLNKVDLVDDEELLELVEMEVREL 157 (394)
T ss_pred -------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc--CCCEEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence 5556667777899999999999998888888888887766 678 67899999987432211 1 122223
Q ss_pred HHhcCC----CCcEEeeccCCC--------ChhHHHHHhccch
Q 006555 294 SLMLGF----GDPIAISAETGL--------GMTELYEALRPSV 324 (640)
Q Consensus 294 ~~~~g~----~~~i~iSA~~g~--------gi~eL~~~I~~~l 324 (640)
+...++ .+++++||.+|. ++.+|++.+.+.+
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 158 LSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred HHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 334454 267999999983 4667777666554
No 418
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.61 E-value=1.3e-14 Score=142.28 Aligned_cols=144 Identities=16% Similarity=0.126 Sum_probs=96.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEEC-------CeeEEEEeCCCCccccCccchHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG-------DLRFKVLDSAGLETEATSGSILDRTA 227 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~-------~~~~~liDTpG~~~~~~~~~~~~~~~ 227 (640)
+|+++|.++||||||++++++..... .+..++..+.....+.+. ...+.+|||+|.+ ++.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~---~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e----------~~~ 68 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLG---RPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE----------SVK 68 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---CCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch----------hHH
Confidence 79999999999999999999875422 112123333333334432 2578999999998 556
Q ss_pred HHHHHHHhccceEEEEeecCCCCChhhHH-HHHHHHHh--------------------CCCCcEEEEecCCCCCcCCccc
Q 006555 228 GMTANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH--------------------APQIKPIVAMNKCESLHNGTGS 286 (640)
Q Consensus 228 ~~~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~L~~~--------------------~~~~p~ilV~NK~Dl~~~~~~~ 286 (640)
.+...+++.+|++|+|+|++++.+.+... +...+... ..+.|+++|+||+|+.+++...
T Consensus 69 ~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~ 148 (202)
T cd04102 69 STRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESS 148 (202)
T ss_pred HHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccc
Confidence 67778899999999999999987777532 22223221 1368999999999997654332
Q ss_pred hHH----HHHHHHhcCCCCcEEeeccCCCC
Q 006555 287 LAG----AAAESLMLGFGDPIAISAETGLG 312 (640)
Q Consensus 287 ~~~----~~~~~~~~g~~~~i~iSA~~g~g 312 (640)
... ....+.+.|. +.++.++.....
T Consensus 149 ~~~~~~~~~~ia~~~~~-~~i~~~c~~~~~ 177 (202)
T cd04102 149 GNLVLTARGFVAEQGNA-EEINLNCTNGRL 177 (202)
T ss_pred hHHHhhHhhhHHHhcCC-ceEEEecCCccc
Confidence 221 2233455666 567777775543
No 419
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.61 E-value=5.7e-15 Score=167.19 Aligned_cols=149 Identities=21% Similarity=0.259 Sum_probs=103.3
Q ss_pred eEEEEeCCCCchHHHHHHHhcCC--ceeecCcccceeeeEEEEEEE-CCeEEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 359 QLAIVGRPNVGKSTLLNALLQED--RVLVGPEAGLTRDSVRVHFEY-QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~--~~~~~~~~gtT~d~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
-|+++|++++|||||+++|+|.+ +.......|+|.+.....+.. ++..+.+|||||+.++ . ..+...
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~f---------i-~~m~~g 71 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKF---------L-SNMLAG 71 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHH---------H-HHHHHH
Confidence 48999999999999999999753 233444568998876555544 5678899999996432 1 234566
Q ss_pred HhhccEEEEEecccHH---------H-HHHcCCc-EEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEE
Q 006555 436 LMRAHVVALVLDAEEV---------R-AVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVF 504 (640)
Q Consensus 436 i~~advvllVvDa~~~---------~-~~~~~~p-~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~ 504 (640)
+..+|++++|+|++++ . ....++| +|||+||+|+.+... ++.+.+.+...+... .....++++
T Consensus 72 ~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~----~~~v~~ei~~~l~~~--~~~~~~ii~ 145 (614)
T PRK10512 72 VGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEAR----IAEVRRQVKAVLREY--GFAEAKLFV 145 (614)
T ss_pred hhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHH----HHHHHHHHHHHHHhc--CCCCCcEEE
Confidence 7789999999999874 1 1234666 579999999975422 122222222222111 112478999
Q ss_pred eccccCCCHHHHHHHHHHH
Q 006555 505 TSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 505 iSAk~g~gv~~l~~~i~~~ 523 (640)
+||++|.|++++++.|...
T Consensus 146 VSA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 146 TAATEGRGIDALREHLLQL 164 (614)
T ss_pred EeCCCCCCCHHHHHHHHHh
Confidence 9999999999999888754
No 420
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.61 E-value=6.5e-15 Score=144.27 Aligned_cols=164 Identities=17% Similarity=0.215 Sum_probs=106.5
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecC-cccceeeeEEEEEEECCeEEEEEEeCCCCcccccC-CchhhHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGP-EAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEK-GPASLSVMQSRKN 435 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~-~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~-~~~~~~~~~~~~~ 435 (640)
++|+++|++|+|||||+|+|+|...+.++. .+++|+++......++|.++.++||||+.+..... ............+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 479999999999999999999987665543 45789988888888899999999999998763211 1111111222233
Q ss_pred HhhccEEEEEecccHH--------HHHHc------CCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 436 LMRAHVVALVLDAEEV--------RAVEE------GRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 436 i~~advvllVvDa~~~--------~~~~~------~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
..++|++|+|+|+.+. ..+.. ..++|+|++++|........+..... ...+...+..+.+ .
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~----~~~l~~l~~~c~~-r 155 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENS----CEALKRLLEKCGG-R 155 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhc----cHHHHHHHHHhCC-e
Confidence 4578999999998753 11111 26899999999987654333222221 1223333333322 2
Q ss_pred EEEe-----ccccCCCHHHHHHHHHHHHHH
Q 006555 502 VVFT-----SALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 502 ~v~i-----SAk~g~gv~~l~~~i~~~~~~ 526 (640)
++.. |+..+.++.+|++.|.+...+
T Consensus 156 ~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 156 YVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 3223 356677888888777776654
No 421
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.61 E-value=5.1e-15 Score=146.05 Aligned_cols=168 Identities=16% Similarity=0.181 Sum_probs=120.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 233 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 233 (640)
..|.|+|.+|+|||||+|+|.+.....|...+. .|+...+....+++..+.||||||+++....+ .++.+...++
T Consensus 40 vnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~--~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D---~~~r~~~~d~ 114 (296)
T COG3596 40 VNVLLMGATGAGKSSLINALFQGEVKEVSKVGV--GTDITTRLRLSYDGENLVLWDTPGLGDGKDKD---AEHRQLYRDY 114 (296)
T ss_pred eeEEEecCCCCcHHHHHHHHHhccCceeeeccc--CCCchhhHHhhccccceEEecCCCcccchhhh---HHHHHHHHHH
Confidence 367799999999999999999877777765553 44444444455677889999999999654332 2456777889
Q ss_pred HhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCC----c------cchHHHHHH------HHhc
Q 006555 234 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNG----T------GSLAGAAAE------SLML 297 (640)
Q Consensus 234 ~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~----~------~~~~~~~~~------~~~~ 297 (640)
+.+.|++++++|+.++.-..|+++++-+.-..-++++++++|.+|...+. . .......++ .+..
T Consensus 115 l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q 194 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQ 194 (296)
T ss_pred hhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987767766665555444468999999999987552 0 001111100 0111
Q ss_pred CCCCcEEeeccCCCChhHHHHHhccchHH
Q 006555 298 GFGDPIAISAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 298 g~~~~i~iSA~~g~gi~eL~~~I~~~l~~ 326 (640)
...+++.+|...++|+++|..++...++.
T Consensus 195 ~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 195 EVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred hcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 23466788889999999999999988764
No 422
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.61 E-value=5e-15 Score=153.43 Aligned_cols=143 Identities=28% Similarity=0.418 Sum_probs=99.3
Q ss_pred HHhccceEEEEeecCCCC-ChhhHHHHHHHHHh-CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCC
Q 006555 233 VLAKTQFAIFMIDVRSGL-HPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 310 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~-~~~~~~~~~~L~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g 310 (640)
.+.++|.+++|+|+.++. +.. .+.+|+... ..++|+++|+||+|+..+.. ...........++ +++++||++|
T Consensus 75 i~anvD~vllV~d~~~p~~s~~--~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~-~v~~vSA~~g 149 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPR--LLDRYLVAAEAAGIEPVIVLTKADLLDDEE--EELELVEALALGY-PVLAVSAKTG 149 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHH--HHHHHHHHHHHcCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCC-eEEEEECCCC
Confidence 478999999999999876 433 333344321 23789999999999975421 1122333344666 7899999999
Q ss_pred CChhHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEeCCCCchHHHHHHHhcCCceeecCcc-
Q 006555 311 LGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA- 389 (640)
Q Consensus 311 ~gi~eL~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~- 389 (640)
.|+++|.+.+.. -.++++|.+|||||||+|.|++.....++...
T Consensus 150 ~gi~~L~~~L~~-----------------------------------k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~ 194 (287)
T cd01854 150 EGLDELREYLKG-----------------------------------KTSVLVGQSGVGKSTLINALLPDLDLATGEISE 194 (287)
T ss_pred ccHHHHHhhhcc-----------------------------------ceEEEECCCCCCHHHHHHHHhchhhccccceec
Confidence 999998876542 15899999999999999999987654433222
Q ss_pred ------cceeeeEEEEEEECCeEEEEEEeCCCCcc
Q 006555 390 ------GLTRDSVRVHFEYQGRTVYLVDTAGWLQR 418 (640)
Q Consensus 390 ------gtT~d~~~~~~~~~~~~~~liDTpG~~~~ 418 (640)
+||++.....+... ..++||||+.+.
T Consensus 195 ~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 195 KLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred cCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 36666544333222 269999998665
No 423
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.61 E-value=6.4e-15 Score=160.02 Aligned_cols=152 Identities=19% Similarity=0.240 Sum_probs=109.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeec--------------------------CCC----CCceeeeeEEEEEEECCee
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVY--------------------------NTP----DDHVTRDIREGLAKLGDLR 204 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~--------------------------~~~----~~~tT~~~~~~~~~~~~~~ 204 (640)
+|+++|++++|||||+++|+.....+.. +.. ..++|.+.......+++.+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 7999999999999999999744322111 000 0236788888888888999
Q ss_pred EEEEeCCCCccccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCc
Q 006555 205 FKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGT 284 (640)
Q Consensus 205 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~ 284 (640)
+.+|||||+. ++...+...+..+|++++|+|+..+....+.+....+.... ..++|+|+||+|+.....
T Consensus 82 ~~liDtPGh~----------~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~-~~~iivviNK~D~~~~~~ 150 (406)
T TIGR02034 82 FIVADTPGHE----------QYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLG-IRHVVLAVNKMDLVDYDE 150 (406)
T ss_pred EEEEeCCCHH----------HHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcC-CCcEEEEEEecccccchH
Confidence 9999999987 55555566789999999999999998887777666665542 346889999999975332
Q ss_pred cchHHHHHH----HHhcCCC--CcEEeeccCCCChhHHH
Q 006555 285 GSLAGAAAE----SLMLGFG--DPIAISAETGLGMTELY 317 (640)
Q Consensus 285 ~~~~~~~~~----~~~~g~~--~~i~iSA~~g~gi~eL~ 317 (640)
....+.... ....++. +++++||.+|+|++++.
T Consensus 151 ~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~~ 189 (406)
T TIGR02034 151 EVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSRS 189 (406)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcccc
Confidence 111111111 2344553 57999999999998643
No 424
>PLN03127 Elongation factor Tu; Provisional
Probab=99.61 E-value=1.7e-14 Score=157.81 Aligned_cols=143 Identities=24% Similarity=0.292 Sum_probs=96.5
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcC------Ccee---------ecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccc
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQE------DRVL---------VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 420 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~------~~~~---------~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~ 420 (640)
..++|+++|++|+|||||+++|++. .... .....|+|+|.....++.++.++.++||||+.++
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f-- 137 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY-- 137 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch--
Confidence 4589999999999999999999732 2111 1233799999888888888889999999997543
Q ss_pred cCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCc-EEEEEeCCCCCCCccchHHHHHHHHHcHHH
Q 006555 421 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQE 489 (640)
Q Consensus 421 ~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p-~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~ 489 (640)
...+...+..+|++++|+|+.++ .....++| +|+++||||+.+.. +.++.+.+++...
T Consensus 138 --------~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~---~~~~~i~~~i~~~ 206 (447)
T PLN03127 138 --------VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDE---ELLELVEMELREL 206 (447)
T ss_pred --------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHH---HHHHHHHHHHHHH
Confidence 12233455679999999999764 23346889 57899999997532 2223332223222
Q ss_pred HHhhCCC-CCCCcEEEeccc---cCCC
Q 006555 490 IQTVIPQ-VTGIPVVFTSAL---EGRG 512 (640)
Q Consensus 490 ~~~~~~~-~~~~~~v~iSAk---~g~g 512 (640)
+.. +.. ...+|++++||. +|.|
T Consensus 207 l~~-~~~~~~~vpiip~Sa~sa~~g~n 232 (447)
T PLN03127 207 LSF-YKFPGDEIPIIRGSALSALQGTN 232 (447)
T ss_pred HHH-hCCCCCcceEEEeccceeecCCC
Confidence 211 111 234789999886 4555
No 425
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.60 E-value=6.9e-15 Score=161.18 Aligned_cols=151 Identities=25% Similarity=0.278 Sum_probs=102.6
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCcee------------------------------ecCcccceeeeEEEEEEECCe
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRVL------------------------------VGPEAGLTRDSVRVHFEYQGR 405 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~~------------------------------~~~~~gtT~d~~~~~~~~~~~ 405 (640)
..++|+++|++++|||||+++|+.....+ .....|+|.|.....+.+++.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 45899999999999999999998532111 112448999998888888999
Q ss_pred EEEEEEeCCCCcccccCCchhhHHHHHHHHHhhccEEEEEecccHH------------HHH-HcC-CcEEEEEeCCCCCC
Q 006555 406 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV------------RAV-EEG-RGLVVIVNKMDLLS 471 (640)
Q Consensus 406 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~advvllVvDa~~~------------~~~-~~~-~p~Ilv~NK~Dl~~ 471 (640)
.+.||||||+.++ . ..+...+..+|++++|+|++++ ... ..+ .|+|||+||+|+.+
T Consensus 86 ~i~iiDtpGh~~f---------~-~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 86 EVTIVDCPGHRDF---------I-KNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVN 155 (426)
T ss_pred EEEEEECCCHHHH---------H-HHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccC
Confidence 9999999996432 1 2234456789999999999864 011 123 47899999999975
Q ss_pred CccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEeccccCCCHHHHHH
Q 006555 472 GRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMH 518 (640)
Q Consensus 472 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g~gv~~l~~ 518 (640)
... +.++...+++...+...-......+++++||++|.|+++++.
T Consensus 156 ~~~--~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 156 YDE--EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred ccH--HHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 321 222333333322222111111246899999999999987654
No 426
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.60 E-value=8.2e-15 Score=142.82 Aligned_cols=158 Identities=18% Similarity=0.187 Sum_probs=125.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC--eeEEEEeCCCCccccCccchHHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 230 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 230 (640)
..+|+++|.+|||||+|..++++..+. .+..+ |..|.+...+.+++ ..+.|+||+|+. ++..+.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~--~~y~p--tied~y~k~~~v~~~~~~l~ilDt~g~~----------~~~~~~ 68 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFV--EDYDP--TIEDSYRKELTVDGEVCMLEILDTAGQE----------EFSAMR 68 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccc--cccCC--CccccceEEEEECCEEEEEEEEcCCCcc----------cChHHH
Confidence 358999999999999999999987653 33333 66677777777776 468899999976 444566
Q ss_pred HHHHhccceEEEEeecCCCCChhhHH-HHHHHHH-h-CCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeec
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRK-H-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 307 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~L~~-~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA 307 (640)
..++..+|..++|+++++..++++.. +.+.+.+ . ....|+++|+||+|+...+.+..++....+..++.. .+++||
T Consensus 69 ~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~-f~E~Sa 147 (196)
T KOG0395|consen 69 DLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCA-FIETSA 147 (196)
T ss_pred HHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCc-EEEeec
Confidence 67899999999999999998888733 3444422 1 235799999999999988777777777777788874 899999
Q ss_pred cCCCChhHHHHHhccchH
Q 006555 308 ETGLGMTELYEALRPSVE 325 (640)
Q Consensus 308 ~~g~gi~eL~~~I~~~l~ 325 (640)
+.+.+++++|..+...+.
T Consensus 148 k~~~~v~~~F~~L~r~~~ 165 (196)
T KOG0395|consen 148 KLNYNVDEVFYELVREIR 165 (196)
T ss_pred cCCcCHHHHHHHHHHHHH
Confidence 999999999999887654
No 427
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.60 E-value=1.1e-14 Score=157.85 Aligned_cols=143 Identities=21% Similarity=0.238 Sum_probs=96.2
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcC------Cce---------eecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccc
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQE------DRV---------LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 420 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~------~~~---------~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~ 420 (640)
+.++|+++|+.++|||||+++|++. ... ......|+|++.....++.++.++.||||||+.++.
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~- 89 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV- 89 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH-
Confidence 4589999999999999999999842 111 112246899998777777778899999999975431
Q ss_pred cCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEE-EEEeCCCCCCCccchHHHHHHHHHcHHH
Q 006555 421 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLV-VIVNKMDLLSGRQNSALYKRVKEAVPQE 489 (640)
Q Consensus 421 ~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~I-lv~NK~Dl~~~~~~~~~~~~~~~~v~~~ 489 (640)
..+...+..+|++++|+|+.++ .....++|.+ +|+||+|+.+.. +.++.+.+++...
T Consensus 90 ---------~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~---~~~~~~~~~i~~~ 157 (394)
T TIGR00485 90 ---------KNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE---ELLELVEMEVREL 157 (394)
T ss_pred ---------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHH---HHHHHHHHHHHHH
Confidence 2234455679999999999874 2334578865 689999997542 2222222223222
Q ss_pred HHhhCCCCCCCcEEEeccccCC
Q 006555 490 IQTVIPQVTGIPVVFTSALEGR 511 (640)
Q Consensus 490 ~~~~~~~~~~~~~v~iSAk~g~ 511 (640)
+...-.....+|++++||++|.
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 158 LSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHhcCCCccCccEEECcccccc
Confidence 2221111123799999999985
No 428
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.60 E-value=1.6e-14 Score=155.19 Aligned_cols=162 Identities=23% Similarity=0.243 Sum_probs=110.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEE------------------------CCeeEEEEe
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL------------------------GDLRFKVLD 209 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~------------------------~~~~~~liD 209 (640)
.+|+|||.||||||||||+|++... .+.+.|+ +|.+...+.... ...++++||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y~f--~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D 78 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV-EIANYPF--TTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELID 78 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc-cccCCCC--cceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEE
Confidence 4899999999999999999998764 4566776 888888776542 124689999
Q ss_pred CCCCccccCccchHHHHHHHHHHHHhccceEEEEeecCCCC------------Ch-hhHHH-----H-------------
Q 006555 210 SAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL------------HP-LDLEV-----G------------- 258 (640)
Q Consensus 210 TpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~------------~~-~~~~~-----~------------- 258 (640)
|||+......+.. .....+..+++||++++|+|+.... .+ .|.++ .
T Consensus 79 ~aGl~~ga~~g~g---lg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~ 155 (396)
T PRK09602 79 VAGLVPGAHEGRG---LGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEK 155 (396)
T ss_pred cCCcCCCccchhh---HHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999865443322 2245567799999999999997311 11 11110 0
Q ss_pred -------------------------------HHHHHh----------------------CCCCcEEEEecCCCCCcCCcc
Q 006555 259 -------------------------------KWLRKH----------------------APQIKPIVAMNKCESLHNGTG 285 (640)
Q Consensus 259 -------------------------------~~L~~~----------------------~~~~p~ilV~NK~Dl~~~~~~ 285 (640)
++|++. ...+|+|+|+||+|......
T Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~- 234 (396)
T PRK09602 156 FSRKAQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEE- 234 (396)
T ss_pred HHHHHhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchH-
Confidence 011100 02489999999999753211
Q ss_pred chHHHHHHHHhcCCCCcEEeeccCCCChhH-HHHHhccchHH
Q 006555 286 SLAGAAAESLMLGFGDPIAISAETGLGMTE-LYEALRPSVED 326 (640)
Q Consensus 286 ~~~~~~~~~~~~g~~~~i~iSA~~g~gi~e-L~~~I~~~l~~ 326 (640)
........+...++++||+++.++++ +.+.+.+.+++
T Consensus 235 ----~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~ 272 (396)
T PRK09602 235 ----NIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPG 272 (396)
T ss_pred ----HHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCC
Confidence 12223333666789999999999999 78888877754
No 429
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.60 E-value=9.5e-15 Score=164.58 Aligned_cols=152 Identities=25% Similarity=0.387 Sum_probs=105.9
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCcee---------------ecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCC
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVL---------------VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKG 423 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~---------------~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~ 423 (640)
+|+|+|+.++|||||+++|+.....+ .....|+|.......+.+++.++.||||||+.++.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~---- 78 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG---- 78 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH----
Confidence 69999999999999999998532111 11234788888888889999999999999975442
Q ss_pred chhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhh
Q 006555 424 PASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTV 493 (640)
Q Consensus 424 ~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~ 493 (640)
.....+++.+|++++|+|++++ .....++|+|+|+||+|+...+ ..+..+.+.+.+.. +..
T Consensus 79 ------~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~-~~~v~~ei~~l~~~-~g~- 149 (594)
T TIGR01394 79 ------GEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSAR-PDEVVDEVFDLFAE-LGA- 149 (594)
T ss_pred ------HHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcC-HHHHHHHHHHHHHh-hcc-
Confidence 2345678899999999999864 3345789999999999986542 12222222222111 000
Q ss_pred CCCCCCCcEEEeccccCC----------CHHHHHHHHHHH
Q 006555 494 IPQVTGIPVVFTSALEGR----------GRIAVMHQVIDT 523 (640)
Q Consensus 494 ~~~~~~~~~v~iSAk~g~----------gv~~l~~~i~~~ 523 (640)
-.....+|++++||++|. |+..+|+.+.+.
T Consensus 150 ~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~ 189 (594)
T TIGR01394 150 DDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRH 189 (594)
T ss_pred ccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHh
Confidence 001224689999999996 677777666654
No 430
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.60 E-value=1e-14 Score=160.99 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=107.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCC----------CC--------------------CceeeeeEEEEEEECC
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNT----------PD--------------------DHVTRDIREGLAKLGD 202 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~----------~~--------------------~~tT~~~~~~~~~~~~ 202 (640)
..+|+++|++++|||||+++|+.....+.... .| .++|.+.......+++
T Consensus 27 ~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~ 106 (474)
T PRK05124 27 LLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEK 106 (474)
T ss_pred ceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCC
Confidence 46999999999999999999986543322110 11 2256777777777888
Q ss_pred eeEEEEeCCCCccccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcC
Q 006555 203 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 282 (640)
Q Consensus 203 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~ 282 (640)
.++.+|||||+. ++.......+..+|++++|+|+..+....+.+....+.... .+|+|+|+||+|+...
T Consensus 107 ~~i~~iDTPGh~----------~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg-~~~iIvvvNKiD~~~~ 175 (474)
T PRK05124 107 RKFIIADTPGHE----------QYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLG-IKHLVVAVNKMDLVDY 175 (474)
T ss_pred cEEEEEECCCcH----------HHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhC-CCceEEEEEeeccccc
Confidence 999999999976 44445555679999999999999988776655555454442 3578999999999753
Q ss_pred CccchHHHHHH----HHhcC---CCCcEEeeccCCCChhHHHH
Q 006555 283 GTGSLAGAAAE----SLMLG---FGDPIAISAETGLGMTELYE 318 (640)
Q Consensus 283 ~~~~~~~~~~~----~~~~g---~~~~i~iSA~~g~gi~eL~~ 318 (640)
........... ....+ ..+++++||++|.|++++.+
T Consensus 176 ~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~~ 218 (474)
T PRK05124 176 SEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQSE 218 (474)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccccc
Confidence 32212222222 22333 24679999999999987543
No 431
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.60 E-value=1e-14 Score=147.71 Aligned_cols=155 Identities=21% Similarity=0.253 Sum_probs=114.0
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEE-CCeEEEEEEeCCCCccccc-CCchhhHHHHHHHHH
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY-QGRTVYLVDTAGWLQREKE-KGPASLSVMQSRKNL 436 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~-~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~~~i 436 (640)
.|.+||.||+|||||++++... ...+.+||.||..+.-+.+.. .+..+.+-|.||+.+...+ .+. -.+.+++|
T Consensus 161 DVGLVG~PNaGKSTlls~vS~A-kPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GL----G~~FLrHI 235 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAA-KPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGL----GLRFLRHI 235 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhc-CCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCc----cHHHHHHH
Confidence 4789999999999999999965 478899999999998888876 4557999999999877322 221 14567899
Q ss_pred hhccEEEEEecccHH-------------------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCC
Q 006555 437 MRAHVVALVLDAEEV-------------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 497 (640)
Q Consensus 437 ~~advvllVvDa~~~-------------------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 497 (640)
+++-++++|+|++.. ...-.++|.+||+||+|+....+ ..+.+.+. +... .
T Consensus 236 ERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e---~~~~~~~~----l~~~---~ 305 (369)
T COG0536 236 ERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEE---ELEELKKA----LAEA---L 305 (369)
T ss_pred HhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHH---HHHHHHHH----HHHh---c
Confidence 999999999999743 01125799999999999765522 22222222 2211 1
Q ss_pred CCCcEEEeccccCCCHHHHHHHHHHHHHHHh
Q 006555 498 TGIPVVFTSALEGRGRIAVMHQVIDTYQKWC 528 (640)
Q Consensus 498 ~~~~~v~iSAk~g~gv~~l~~~i~~~~~~~~ 528 (640)
.+...++|||.+++|++++...+.+.+.+..
T Consensus 306 ~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 306 GWEVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred CCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 2333333999999999999999988876553
No 432
>PRK00049 elongation factor Tu; Reviewed
Probab=99.60 E-value=1.3e-14 Score=157.22 Aligned_cols=144 Identities=22% Similarity=0.239 Sum_probs=99.0
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCC------ce---------eecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccc
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQED------RV---------LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 420 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~------~~---------~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~ 420 (640)
..++|+++|++++|||||+++|++.. .. ......|+|++.....+..++.++.++||||+.++
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f-- 88 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY-- 88 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH--
Confidence 45899999999999999999999631 11 11125689999887777778889999999997432
Q ss_pred cCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEE-EEEeCCCCCCCccchHHHHHHHHHcHHH
Q 006555 421 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLV-VIVNKMDLLSGRQNSALYKRVKEAVPQE 489 (640)
Q Consensus 421 ~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~I-lv~NK~Dl~~~~~~~~~~~~~~~~v~~~ 489 (640)
...+...+..+|++++|+|+.++ .....++|.+ +++||+|+.+.. +.++.+.+++...
T Consensus 89 --------~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~---~~~~~~~~~i~~~ 157 (396)
T PRK00049 89 --------VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE---ELLELVEMEVREL 157 (396)
T ss_pred --------HHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchH---HHHHHHHHHHHHH
Confidence 12334566789999999999864 2334688976 589999997532 2233333333333
Q ss_pred HHhhCCCCCCCcEEEeccccCCC
Q 006555 490 IQTVIPQVTGIPVVFTSALEGRG 512 (640)
Q Consensus 490 ~~~~~~~~~~~~~v~iSAk~g~g 512 (640)
+...-.....+|++++||++|.+
T Consensus 158 l~~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 158 LSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HHhcCCCccCCcEEEeecccccC
Confidence 32211112357999999999864
No 433
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=6.1e-16 Score=138.70 Aligned_cols=147 Identities=21% Similarity=0.217 Sum_probs=105.7
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEEC---------C--eEEEEEEeCCCCcccccCCch
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ---------G--RTVYLVDTAGWLQREKEKGPA 425 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~---------~--~~~~liDTpG~~~~~~~~~~~ 425 (640)
-+|...+|++||||||++.+++.. .+...-...+.+|.....+.++ + ..++||||+|+.++.
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~-~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFR------ 81 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDG-KFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFR------ 81 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCC-cccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHH------
Confidence 367788999999999999988844 3433334445556665555542 1 256799999975542
Q ss_pred hhHHHHHHHHHhhccEEEEEecccHH---------------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHH
Q 006555 426 SLSVMQSRKNLMRAHVVALVLDAEEV---------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEI 490 (640)
Q Consensus 426 ~~~~~~~~~~i~~advvllVvDa~~~---------------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~ 490 (640)
..+...++.|-++++++|.++. .+..++.-+|+++||+||.+. +.++++.
T Consensus 82 ----SLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~-----------R~Vs~~q 146 (219)
T KOG0081|consen 82 ----SLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQ-----------RVVSEDQ 146 (219)
T ss_pred ----HHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhh-----------hhhhHHH
Confidence 2344677889999999999875 223456779999999999765 3344444
Q ss_pred HhhCCCCCCCcEEEeccccCCCHHHHHHHHHHHHH
Q 006555 491 QTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQ 525 (640)
Q Consensus 491 ~~~~~~~~~~~~v~iSAk~g~gv~~l~~~i~~~~~ 525 (640)
+..++...++|++++||-+|.||++..+.+...+.
T Consensus 147 a~~La~kyglPYfETSA~tg~Nv~kave~LldlvM 181 (219)
T KOG0081|consen 147 AAALADKYGLPYFETSACTGTNVEKAVELLLDLVM 181 (219)
T ss_pred HHHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHH
Confidence 44455566899999999999999998887776544
No 434
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.59 E-value=9.5e-15 Score=160.10 Aligned_cols=153 Identities=21% Similarity=0.196 Sum_probs=106.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceee------------------------c------CCCCCceeeeeEEEEEEECC
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALV------------------------Y------NTPDDHVTRDIREGLAKLGD 202 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v------------------------~------~~~~~~tT~~~~~~~~~~~~ 202 (640)
...|+++|++++|||||+++|+.....+. . ...| +|.+.....+.+++
T Consensus 7 ~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg--~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 7 HINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERG--VTIDVAHWKFETDK 84 (426)
T ss_pred eeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcC--ceEEEEEEEEccCC
Confidence 35899999999999999999985321111 0 1223 88899888888889
Q ss_pred eeEEEEeCCCCccccCccchHHHHHHHHHHHHhccceEEEEeecCCCCC---hhhHHHHHHHHHhCCCCcEEEEecCCCC
Q 006555 203 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLH---PLDLEVGKWLRKHAPQIKPIVAMNKCES 279 (640)
Q Consensus 203 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~---~~~~~~~~~L~~~~~~~p~ilV~NK~Dl 279 (640)
..+.+|||||+. ++.......+..+|++++|+|++++.+ ....+....++.. ...|+++|+||+|+
T Consensus 85 ~~i~iiDtpGh~----------~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl 153 (426)
T TIGR00483 85 YEVTIVDCPGHR----------DFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDS 153 (426)
T ss_pred eEEEEEECCCHH----------HHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhc
Confidence 999999999986 455555667889999999999998833 2323333333333 23578999999999
Q ss_pred CcCCccch----HHHHHHHHhcCC----CCcEEeeccCCCChhHHHH
Q 006555 280 LHNGTGSL----AGAAAESLMLGF----GDPIAISAETGLGMTELYE 318 (640)
Q Consensus 280 ~~~~~~~~----~~~~~~~~~~g~----~~~i~iSA~~g~gi~eL~~ 318 (640)
........ .+....+...++ .+++++||++|.|++++..
T Consensus 154 ~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 154 VNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred cCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 75322111 122233444554 2579999999999987443
No 435
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.59 E-value=2.6e-14 Score=134.86 Aligned_cols=154 Identities=24% Similarity=0.275 Sum_probs=97.2
Q ss_pred eEEEEeCCCCchHHHHHHHhcC-CceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccC-CchhhHHHHHHHHH
Q 006555 359 QLAIVGRPNVGKSTLLNALLQE-DRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEK-GPASLSVMQSRKNL 436 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~-~~~~~~~~~~~~~i 436 (640)
.|+++|.+|+|||||+|.+++. .....++.+++|.+.... ..++ .+.+|||||+....... ..+.+. .....++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~D~~g~~~~~~~~~~~~~~~-~~~~~~~ 76 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF--NVND-KFRLVDLPGYGYAKVSKEVKEKWG-KLIEEYL 76 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE--EccC-eEEEecCCCccccccCHHHHHHHH-HHHHHHH
Confidence 4899999999999999999943 334566777777654332 2233 88999999975431111 111111 1111222
Q ss_pred ---hhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEE
Q 006555 437 ---MRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVV 503 (640)
Q Consensus 437 ---~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v 503 (640)
...+++++|+|..+. .....+.|+++|+||+|+............+. ..+.. .....+++
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~----~~l~~---~~~~~~~~ 149 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIK----KELKL---FEIDPPII 149 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHH----HHHHh---ccCCCceE
Confidence 346789999998643 12234689999999999975432221111111 11111 23456899
Q ss_pred EeccccCCCHHHHHHHHHHH
Q 006555 504 FTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 504 ~iSAk~g~gv~~l~~~i~~~ 523 (640)
++||+++.|+.++++.+.+.
T Consensus 150 ~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 150 LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred EEecCCCCCHHHHHHHHHHh
Confidence 99999999999999988753
No 436
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.59 E-value=2.8e-14 Score=129.30 Aligned_cols=157 Identities=16% Similarity=0.139 Sum_probs=116.1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
..+|.++|..|+||||++++|.+.....++ -|.-.....+..++.++.+||.+|+. ..+.....
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~------pt~gf~Iktl~~~~~~L~iwDvGGq~----------~lr~~W~n 79 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDTIS------PTLGFQIKTLEYKGYTLNIWDVGGQK----------TLRSYWKN 79 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccccC------CccceeeEEEEecceEEEEEEcCCcc----------hhHHHHHH
Confidence 458999999999999999999998744333 35556777888899999999999998 56677889
Q ss_pred HHhccceEEEEeecCCCCChhh--HHHHHHHHH-hCCCCcEEEEecCCCCCcCCccchHH---HHHHH-HhcCCCCcEEe
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRK-HAPQIKPIVAMNKCESLHNGTGSLAG---AAAES-LMLGFGDPIAI 305 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~--~~~~~~L~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~---~~~~~-~~~g~~~~i~i 305 (640)
|++.+|++|+|+|.+++...++ .++.+.|.+ ...+.|++++.||.|+...-...... ..... ..... +.+-+
T Consensus 80 YfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~-~l~~c 158 (185)
T KOG0073|consen 80 YFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHW-RLVKC 158 (185)
T ss_pred hhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCc-eEEEE
Confidence 9999999999999998776664 222233322 13478999999999998543211111 11112 22222 67899
Q ss_pred eccCCCChhHHHHHhccchHH
Q 006555 306 SAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 306 SA~~g~gi~eL~~~I~~~l~~ 326 (640)
||.+|+++.+-++++++.+.+
T Consensus 159 s~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 159 SAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred eccccccHHHHHHHHHHHHHH
Confidence 999999999999999877654
No 437
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.59 E-value=3.7e-14 Score=128.56 Aligned_cols=150 Identities=22% Similarity=0.284 Sum_probs=111.1
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHH
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 435 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 435 (640)
+.++|.++|..|+||||++++|.+.....++|+.| +......+++.++.+||..|+... ...+..|
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~g----f~Iktl~~~~~~L~iwDvGGq~~l----------r~~W~nY 80 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLG----FQIKTLEYKGYTLNIWDVGGQKTL----------RSYWKNY 80 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccCCccc----eeeEEEEecceEEEEEEcCCcchh----------HHHHHHh
Confidence 35899999999999999999999987555555544 444567789999999999996433 2467789
Q ss_pred HhhccEEEEEecccHHH---------------HHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCC
Q 006555 436 LMRAHVVALVLDAEEVR---------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 500 (640)
Q Consensus 436 i~~advvllVvDa~~~~---------------~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 500 (640)
+..+|++|+|+|.++.. ....+.|++|++||.|+...-...++ ... .++...+ .....
T Consensus 81 festdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i----~~~--~~L~~l~-ks~~~ 153 (185)
T KOG0073|consen 81 FESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEI----SKA--LDLEELA-KSHHW 153 (185)
T ss_pred hhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHH----HHh--hCHHHhc-cccCc
Confidence 99999999999999861 11257899999999999854322211 111 1222222 33456
Q ss_pred cEEEeccccCCCHHHHHHHHHHHHHH
Q 006555 501 PVVFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 501 ~~v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
+++-|||.+|+++.+-++++.....+
T Consensus 154 ~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 154 RLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred eEEEEeccccccHHHHHHHHHHHHHH
Confidence 89999999999999999888776554
No 438
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.59 E-value=3.4e-14 Score=141.21 Aligned_cols=146 Identities=16% Similarity=0.150 Sum_probs=96.2
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCc-eeecCcccceeeeEEEEEEEC--CeEEEEEEeCCCCcccccCCchhhHHHHH
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDR-VLVGPEAGLTRDSVRVHFEYQ--GRTVYLVDTAGWLQREKEKGPASLSVMQS 432 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~-~~~~~~~gtT~d~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 432 (640)
..+||+++|++|||||||+++++.... ....++.+. +.....+..+ ...+.+|||+|..+.. .. .
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~i~~~Dt~g~~~~~---------~~-~ 75 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGV--EVHPLKFYTNCGPICFNVWDTAGQEKFG---------GL-R 75 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccce--EEEEEEEEECCeEEEEEEEECCCchhhh---------hh-h
Confidence 458999999999999999987765432 122233333 3333333333 3577899999964331 11 2
Q ss_pred HHHHhhccEEEEEecccHHH-------------HHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCC
Q 006555 433 RKNLMRAHVVALVLDAEEVR-------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 499 (640)
Q Consensus 433 ~~~i~~advvllVvDa~~~~-------------~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 499 (640)
..++..+|++++|+|.++.. ....+.|+++++||+|+.+.....+.. .+.+ ..+
T Consensus 76 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~---------~~~~----~~~ 142 (215)
T PTZ00132 76 DGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQI---------TFHR----KKN 142 (215)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHH---------HHHH----HcC
Confidence 34566899999999998651 122578999999999986432111110 1111 124
Q ss_pred CcEEEeccccCCCHHHHHHHHHHHHHH
Q 006555 500 IPVVFTSALEGRGRIAVMHQVIDTYQK 526 (640)
Q Consensus 500 ~~~v~iSAk~g~gv~~l~~~i~~~~~~ 526 (640)
..++++||++|.|++++|.++++.+..
T Consensus 143 ~~~~e~Sa~~~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 143 LQYYDISAKSNYNFEKPFLWLARRLTN 169 (215)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 678999999999999999998876543
No 439
>PRK12735 elongation factor Tu; Reviewed
Probab=99.59 E-value=1.6e-14 Score=156.45 Aligned_cols=158 Identities=20% Similarity=0.163 Sum_probs=110.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcC------Ccee---------ecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCcccc
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRR------REAL---------VYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 217 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~------~~~~---------v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 217 (640)
...|+++|++|+|||||+++|++. .... .....| +|.+........++.++.++||||+.
T Consensus 12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG--iT~~~~~~~~~~~~~~i~~iDtPGh~--- 86 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARG--ITINTSHVEYETANRHYAHVDCPGHA--- 86 (396)
T ss_pred eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcC--ceEEEeeeEEcCCCcEEEEEECCCHH---
Confidence 348999999999999999999962 1100 011234 77887666666677899999999986
Q ss_pred CccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEE-EEecCCCCCcCCccc--h-HHHHHH
Q 006555 218 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPI-VAMNKCESLHNGTGS--L-AGAAAE 293 (640)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~i-lV~NK~Dl~~~~~~~--~-~~~~~~ 293 (640)
++...+...+..+|++++|+|+.++....+.+.+..+... ++|.+ +|+||+|+.+..+.. . .+....
T Consensus 87 -------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~--gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~ 157 (396)
T PRK12735 87 -------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (396)
T ss_pred -------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHc--CCCeEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence 5666667788899999999999988777776766666655 67866 579999997532110 1 122223
Q ss_pred HHhcCC----CCcEEeeccCCC----------ChhHHHHHhccch
Q 006555 294 SLMLGF----GDPIAISAETGL----------GMTELYEALRPSV 324 (640)
Q Consensus 294 ~~~~g~----~~~i~iSA~~g~----------gi~eL~~~I~~~l 324 (640)
+...++ .+++++||.+|. ++.+|++.|...+
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred HHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 334443 257999999985 5666666666544
No 440
>PRK10218 GTP-binding protein; Provisional
Probab=99.59 E-value=2.1e-14 Score=161.59 Aligned_cols=142 Identities=25% Similarity=0.362 Sum_probs=100.8
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCcee---------------ecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccC
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVL---------------VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEK 422 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~---------------~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~ 422 (640)
.+|+++|+.++|||||+++|+.....+ .....|+|.+.....+.+++.++.+|||||+.++.
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~--- 82 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG--- 82 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH---
Confidence 479999999999999999999632211 12345888888888888999999999999976552
Q ss_pred CchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHh
Q 006555 423 GPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQT 492 (640)
Q Consensus 423 ~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~ 492 (640)
..+..+++.+|++|+|+|++++ .....++|.|+++||+|+...+. ....+.+.+.+.. +.
T Consensus 83 -------~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~-~~vl~ei~~l~~~-l~- 152 (607)
T PRK10218 83 -------GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARP-DWVVDQVFDLFVN-LD- 152 (607)
T ss_pred -------HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCch-hHHHHHHHHHHhc-cC-
Confidence 2345678899999999999875 33457899999999999875432 2222222222111 00
Q ss_pred hCCCCCCCcEEEeccccCCC
Q 006555 493 VIPQVTGIPVVFTSALEGRG 512 (640)
Q Consensus 493 ~~~~~~~~~~v~iSAk~g~g 512 (640)
.......+|++++||++|.+
T Consensus 153 ~~~~~~~~PVi~~SA~~G~~ 172 (607)
T PRK10218 153 ATDEQLDFPIVYASALNGIA 172 (607)
T ss_pred ccccccCCCEEEeEhhcCcc
Confidence 01112357899999999985
No 441
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.59 E-value=1.1e-14 Score=149.26 Aligned_cols=104 Identities=21% Similarity=0.250 Sum_probs=81.9
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCce-----e------------ecCcccceeeeEEEEEEECCeEEEEEEeCCCCccccc
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRV-----L------------VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE 421 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~-----~------------~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~ 421 (640)
+|+++|++|+|||||+++|+..... . .....|+|++.....+++++.++.+|||||+.++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~-- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT-- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHH--
Confidence 4899999999999999999742211 0 11345889998888999999999999999975432
Q ss_pred CCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCC
Q 006555 422 KGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 472 (640)
Q Consensus 422 ~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~ 472 (640)
..+..+++.+|++++|+|+.++ .....++|+++++||+|+.+.
T Consensus 79 --------~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a 131 (270)
T cd01886 79 --------IEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGA 131 (270)
T ss_pred --------HHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 2456788899999999999764 233468999999999998754
No 442
>PLN03126 Elongation factor Tu; Provisional
Probab=99.59 E-value=2.1e-14 Score=157.89 Aligned_cols=145 Identities=22% Similarity=0.223 Sum_probs=102.3
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCce---------------eecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccc
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRV---------------LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 420 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~---------------~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~ 420 (640)
..++|+++|++++|||||+++|++.... ......|+|.+.....++.++.++.||||||+.++-
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~- 158 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV- 158 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH-
Confidence 4589999999999999999999953111 123345889988888888889999999999975431
Q ss_pred cCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCc-EEEEEeCCCCCCCccchHHHHHHHHHcHHH
Q 006555 421 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQE 489 (640)
Q Consensus 421 ~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p-~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~ 489 (640)
..+...+..+|++++|+|+.++ .....++| +|+++||+|+... .+.++.+.+++...
T Consensus 159 ---------~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~---~~~~~~i~~~i~~~ 226 (478)
T PLN03126 159 ---------KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD---EELLELVELEVREL 226 (478)
T ss_pred ---------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCH---HHHHHHHHHHHHHH
Confidence 2335566789999999999865 23346888 7889999999753 22333333333333
Q ss_pred HHhhCCCCCCCcEEEeccccCCCH
Q 006555 490 IQTVIPQVTGIPVVFTSALEGRGR 513 (640)
Q Consensus 490 ~~~~~~~~~~~~~v~iSAk~g~gv 513 (640)
+...-.....+|++++||.+|.++
T Consensus 227 l~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 227 LSSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred HHhcCCCcCcceEEEEEccccccc
Confidence 332111123689999999998764
No 443
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.58 E-value=2.6e-14 Score=154.95 Aligned_cols=150 Identities=19% Similarity=0.125 Sum_probs=105.9
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcC------Ccee---e------cCCCCCceeeeeEEEEEEECCeeEEEEeCCCCcccc
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRR------REAL---V------YNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 217 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~------~~~~---v------~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 217 (640)
...|+++|+.++|||||+++|++. .... . ....| +|.+........++.++.+|||||+.
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG--~Ti~~~~~~~~~~~~~~~liDtpGh~--- 86 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARG--ITINTAHVEYETENRHYAHVDCPGHA--- 86 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcC--cceeeEEEEEcCCCEEEEEEECCchH---
Confidence 358999999999999999999842 1110 0 11134 78887766666677889999999997
Q ss_pred CccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEE-EEecCCCCCcCCccc---hHHHHHH
Q 006555 218 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPI-VAMNKCESLHNGTGS---LAGAAAE 293 (640)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~i-lV~NK~Dl~~~~~~~---~~~~~~~ 293 (640)
++.......+..+|++++|+|+.++....+.+.+.++... ++|.+ +|+||+|+.+..+.. ..+....
T Consensus 87 -------~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~ 157 (394)
T TIGR00485 87 -------DYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (394)
T ss_pred -------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCEEEEEEEecccCCHHHHHHHHHHHHHHH
Confidence 4555566677899999999999998888877777777765 67765 689999987532211 1122233
Q ss_pred HHhcCC----CCcEEeeccCCC-ChhHH
Q 006555 294 SLMLGF----GDPIAISAETGL-GMTEL 316 (640)
Q Consensus 294 ~~~~g~----~~~i~iSA~~g~-gi~eL 316 (640)
+...++ .+++++||.+|. |..++
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~g~~~~ 185 (394)
T TIGR00485 158 LSEYDFPGDDTPIIRGSALKALEGDAEW 185 (394)
T ss_pred HHhcCCCccCccEEECccccccccCCch
Confidence 444443 367999999885 44333
No 444
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.58 E-value=2.3e-14 Score=140.57 Aligned_cols=164 Identities=13% Similarity=0.051 Sum_probs=104.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeec-CCCC-CceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVY-NTPD-DHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~-~~~~-~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|.+|||||||+|+|++....... ...+ ..+|+....... .....+.+|||||+.+.... ..++.. .
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~---~~~~l~--~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFP---PDDYLE--E 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCC---HHHHHH--H
Confidence 47999999999999999999985432111 1111 112333221111 12347899999999743221 112211 1
Q ss_pred HHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCcc-------chHH----HH----HHHHh
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTG-------SLAG----AA----AESLM 296 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~-------~~~~----~~----~~~~~ 296 (640)
..+..+|++++|.| .+.+..+..+.+++++. ++|+++|+||+|+...... ..+. .. ..+..
T Consensus 76 ~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 151 (197)
T cd04104 76 MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE 151 (197)
T ss_pred hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence 23567898888854 44788888888888886 7899999999999643210 0111 11 11112
Q ss_pred --cCCCCcEEeecc--CCCChhHHHHHhccchHHH
Q 006555 297 --LGFGDPIAISAE--TGLGMTELYEALRPSVEDY 327 (640)
Q Consensus 297 --~g~~~~i~iSA~--~g~gi~eL~~~I~~~l~~~ 327 (640)
....+++.+|+. .+.|+..|.+.|...+++.
T Consensus 152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 223577999998 6799999999999988764
No 445
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.58 E-value=1.5e-14 Score=157.24 Aligned_cols=159 Identities=15% Similarity=0.047 Sum_probs=103.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCcee--ecCCCCCceeeeeEEEEEE--------------------------ECCeeE
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREAL--VYNTPDDHVTRDIREGLAK--------------------------LGDLRF 205 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~--v~~~~~~~tT~~~~~~~~~--------------------------~~~~~~ 205 (640)
.+|+++|.+++|||||+++|++..... .....| .|.+..+.... ..+..+
T Consensus 5 ~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg--~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 5 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRG--ISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred EEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcC--ceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 489999999999999999998642100 000111 23222211110 024679
Q ss_pred EEEeCCCCccccCccchHHHHHHHHHHHHhccceEEEEeecCCCC-ChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCc
Q 006555 206 KVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL-HPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGT 284 (640)
Q Consensus 206 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~-~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~ 284 (640)
.+|||||+. ++...+...+..+|++++|+|++++. ..+..+.+..+... ..+|+++|+||+|+.+...
T Consensus 83 ~liDtPGh~----------~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-gi~~iIVvvNK~Dl~~~~~ 151 (406)
T TIGR03680 83 SFVDAPGHE----------TLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-GIKNIVIVQNKIDLVSKEK 151 (406)
T ss_pred EEEECCCHH----------HHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-CCCeEEEEEEccccCCHHH
Confidence 999999987 55566677788999999999999876 45545555555443 2357899999999976322
Q ss_pred cc--hHHHHHHHHhcC--CCCcEEeeccCCCChhHHHHHhccchH
Q 006555 285 GS--LAGAAAESLMLG--FGDPIAISAETGLGMTELYEALRPSVE 325 (640)
Q Consensus 285 ~~--~~~~~~~~~~~g--~~~~i~iSA~~g~gi~eL~~~I~~~l~ 325 (640)
.. ..+....+.... -.+++++||++|.|+++|++.|...++
T Consensus 152 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 152 ALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 10 111111111111 125799999999999999999887553
No 446
>PRK00049 elongation factor Tu; Reviewed
Probab=99.57 E-value=3.1e-14 Score=154.12 Aligned_cols=157 Identities=20% Similarity=0.163 Sum_probs=113.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCC------ceee---------cCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccC
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRR------EALV---------YNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEAT 218 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~------~~~v---------~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 218 (640)
..|+++|++++|||||+++|++.. .... ....| +|.+.....+..++.++.++||||+.
T Consensus 13 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg--~Ti~~~~~~~~~~~~~i~~iDtPG~~---- 86 (396)
T PRK00049 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARG--ITINTAHVEYETEKRHYAHVDCPGHA---- 86 (396)
T ss_pred EEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcC--eEEeeeEEEEcCCCeEEEEEECCCHH----
Confidence 479999999999999999999731 0011 11234 88888776666678899999999986
Q ss_pred ccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEE-EEecCCCCCcCCccc--h-HHHHHHH
Q 006555 219 SGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPI-VAMNKCESLHNGTGS--L-AGAAAES 294 (640)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~i-lV~NK~Dl~~~~~~~--~-~~~~~~~ 294 (640)
++...+...+..+|++++|+|+..+....+.+.+.++... ++|.+ +++||+|+.+..... . .+....+
T Consensus 87 ------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l 158 (396)
T PRK00049 87 ------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELL 158 (396)
T ss_pred ------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc--CCCEEEEEEeecCCcchHHHHHHHHHHHHHHH
Confidence 5666667778999999999999999888888888888776 68876 589999997522110 1 1222233
Q ss_pred HhcCC----CCcEEeeccCCC----------ChhHHHHHhccch
Q 006555 295 LMLGF----GDPIAISAETGL----------GMTELYEALRPSV 324 (640)
Q Consensus 295 ~~~g~----~~~i~iSA~~g~----------gi~eL~~~I~~~l 324 (640)
...++ .+++++||.+|. |+.+|+++|.+.+
T Consensus 159 ~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred HhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 34444 256899999875 4556666666543
No 447
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.57 E-value=2.3e-14 Score=142.25 Aligned_cols=114 Identities=18% Similarity=0.229 Sum_probs=79.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeec---CCCC-------------CceeeeeEEEEEEE-----CCeeEEEEeCCCC
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVY---NTPD-------------DHVTRDIREGLAKL-----GDLRFKVLDSAGL 213 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~---~~~~-------------~~tT~~~~~~~~~~-----~~~~~~liDTpG~ 213 (640)
.|+|+|.+++|||||+++|+.....+.. ...+ .++|.......+.+ ....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6999999999999999999975432210 0000 01222222222222 2367999999999
Q ss_pred ccccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCC
Q 006555 214 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESL 280 (640)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~ 280 (640)
. ++...+..++..+|++++|+|++++.+..+.++.+.+... ++|+++|+||+|+.
T Consensus 82 ~----------~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~--~~p~iiviNK~D~~ 136 (213)
T cd04167 82 V----------NFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILE--GLPIVLVINKIDRL 136 (213)
T ss_pred c----------chHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEECcccC
Confidence 8 4445667888999999999999988776655555555443 68999999999986
No 448
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.57 E-value=1.5e-14 Score=159.53 Aligned_cols=150 Identities=29% Similarity=0.361 Sum_probs=101.7
Q ss_pred cCCceEEEEeCCCCchHHHHHHHhcCCceeec--------------------------------CcccceeeeEEEEEEE
Q 006555 355 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVG--------------------------------PEAGLTRDSVRVHFEY 402 (640)
Q Consensus 355 ~~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~--------------------------------~~~gtT~d~~~~~~~~ 402 (640)
+..++|+++|++++|||||+++|+.....+.. ...|+|.+.....+++
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 34689999999999999999999865433221 1125677777777788
Q ss_pred CCeEEEEEEeCCCCcccccCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcC-CcEEEEEeCCCCCC
Q 006555 403 QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEG-RGLVVIVNKMDLLS 471 (640)
Q Consensus 403 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~-~p~Ilv~NK~Dl~~ 471 (640)
++.++.||||||+.++ . ..+...+..+|++++|+|+.++ .....+ +|+|+++||+|+..
T Consensus 105 ~~~~i~~iDTPGh~~f---------~-~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 105 EKRKFIIADTPGHEQY---------T-RNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVD 174 (474)
T ss_pred CCcEEEEEECCCcHHH---------H-HHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeecccc
Confidence 8899999999996432 1 1233456789999999999764 111233 57899999999975
Q ss_pred CccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEeccccCCCHHHHH
Q 006555 472 GRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVM 517 (640)
Q Consensus 472 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g~gv~~l~ 517 (640)
.+ .+.++.+.+.+...+ ..+......+++++||++|.|++++-
T Consensus 175 ~~--~~~~~~i~~~l~~~~-~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 175 YS--EEVFERIREDYLTFA-EQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred ch--hHHHHHHHHHHHHHH-HhcCCCCCceEEEEEeecCCCccccc
Confidence 32 222333333332211 12221235789999999999998653
No 449
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.57 E-value=2.7e-14 Score=142.46 Aligned_cols=153 Identities=24% Similarity=0.225 Sum_probs=94.5
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCcee------e-------cCccccee------------------------eeEEEEEE
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVL------V-------GPEAGLTR------------------------DSVRVHFE 401 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~------~-------~~~~gtT~------------------------d~~~~~~~ 401 (640)
||+++|+.++|||||+++|....... . +-..|.|. +.-...++
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999998532110 0 00011111 00012344
Q ss_pred ECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHHh--hccEEEEEecccHH----------HHHHcCCcEEEEEeCCCC
Q 006555 402 YQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM--RAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDL 469 (640)
Q Consensus 402 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~--~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl 469 (640)
..+..+.++||||+.++. ..+...+. .+|++++|+|+.++ .....++|+++|+||+|+
T Consensus 81 ~~~~~i~liDtpG~~~~~----------~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~ 150 (224)
T cd04165 81 KSSKLVTFIDLAGHERYL----------KTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDL 150 (224)
T ss_pred eCCcEEEEEECCCcHHHH----------HHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 567889999999975441 12233443 68999999999764 234578999999999998
Q ss_pred CCCccchHHHHHHHHHcHHH-----------------HHhhCCCCCCCcEEEeccccCCCHHHHHHHHH
Q 006555 470 LSGRQNSALYKRVKEAVPQE-----------------IQTVIPQVTGIPVVFTSALEGRGRIAVMHQVI 521 (640)
Q Consensus 470 ~~~~~~~~~~~~~~~~v~~~-----------------~~~~~~~~~~~~~v~iSAk~g~gv~~l~~~i~ 521 (640)
.+........+.+.+.+... ..........+|++.+||.+|+|++++...|.
T Consensus 151 ~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 151 APANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred cCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 76433323333332222100 00011223346999999999999998877664
No 450
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.57 E-value=2.5e-14 Score=156.65 Aligned_cols=150 Identities=23% Similarity=0.259 Sum_probs=104.1
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCce------------------------------eecCcccceeeeEEEEEEECCe
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRV------------------------------LVGPEAGLTRDSVRVHFEYQGR 405 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~------------------------------~~~~~~gtT~d~~~~~~~~~~~ 405 (640)
+.++|+++|+.++|||||+.+|+..... ......|+|.|.....+++++.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 4578999999999999999999752110 1112348888888888888999
Q ss_pred EEEEEEeCCCCcccccCCchhhHHHHHHHHHhhccEEEEEecccHH-----------------HHHHcCCc-EEEEEeCC
Q 006555 406 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------------RAVEEGRG-LVVIVNKM 467 (640)
Q Consensus 406 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~advvllVvDa~~~-----------------~~~~~~~p-~Ilv~NK~ 467 (640)
.+.|+||||+.++ ...+...+..+|++++|+|++++ .....++| +|+++||+
T Consensus 86 ~i~lIDtPGh~~f----------~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKm 155 (446)
T PTZ00141 86 YFTIIDAPGHRDF----------IKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKM 155 (446)
T ss_pred EEEEEECCChHHH----------HHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEcc
Confidence 9999999997544 12345567789999999999753 12235776 67999999
Q ss_pred CCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEeccccCCCHHH
Q 006555 468 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIA 515 (640)
Q Consensus 468 Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g~gv~~ 515 (640)
|........+.++.+.+++...+...-.....+|++++||.+|.|+.+
T Consensus 156 D~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 156 DDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 954321122345555555544443321122358999999999999864
No 451
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.57 E-value=1.8e-14 Score=156.51 Aligned_cols=145 Identities=26% Similarity=0.321 Sum_probs=99.1
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeec--------------------------------CcccceeeeEEEEEEECCe
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVG--------------------------------PEAGLTRDSVRVHFEYQGR 405 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~--------------------------------~~~gtT~d~~~~~~~~~~~ 405 (640)
++|+++|++++|||||+++|+.....+.. ...|+|+|.....+++++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 47999999999999999999754322111 1236778888888888999
Q ss_pred EEEEEEeCCCCcccccCCchhhHHHHHHHHHhhccEEEEEecccHH---------H-HHHcCC-cEEEEEeCCCCCCCcc
Q 006555 406 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV---------R-AVEEGR-GLVVIVNKMDLLSGRQ 474 (640)
Q Consensus 406 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~advvllVvDa~~~---------~-~~~~~~-p~Ilv~NK~Dl~~~~~ 474 (640)
++.||||||+.++. ..+...+..+|++|+|+|+.++ . ....+. ++|+|+||+|+....
T Consensus 81 ~~~liDtPGh~~f~----------~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~- 149 (406)
T TIGR02034 81 KFIVADTPGHEQYT----------RNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYD- 149 (406)
T ss_pred EEEEEeCCCHHHHH----------HHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccch-
Confidence 99999999964431 1233567789999999999765 1 112344 588999999997532
Q ss_pred chHHHHHHHHHcHHHHHhhCCCCCCCcEEEeccccCCCHHHH
Q 006555 475 NSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAV 516 (640)
Q Consensus 475 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g~gv~~l 516 (640)
.+.++.+.+.+..-+ ..+. ...++++++||++|.|++++
T Consensus 150 -~~~~~~i~~~~~~~~-~~~~-~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 150 -EEVFENIKKDYLAFA-EQLG-FRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred -HHHHHHHHHHHHHHH-HHcC-CCCccEEEeecccCCCCccc
Confidence 222333333332211 1222 13568999999999998754
No 452
>PLN03127 Elongation factor Tu; Provisional
Probab=99.57 E-value=3e-14 Score=155.80 Aligned_cols=158 Identities=16% Similarity=0.146 Sum_probs=110.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcC------Cceeec---------CCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccC
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRR------REALVY---------NTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEAT 218 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~------~~~~v~---------~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 218 (640)
..|+++|+.|+|||||+++|++. ...... ...| +|.+.....++.++.++.++||||+.
T Consensus 62 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rG--iTi~~~~~~~~~~~~~i~~iDtPGh~---- 135 (447)
T PLN03127 62 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARG--ITIATAHVEYETAKRHYAHVDCPGHA---- 135 (447)
T ss_pred EEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcC--ceeeeeEEEEcCCCeEEEEEECCCcc----
Confidence 47999999999999999999732 111111 1244 88998877777788899999999986
Q ss_pred ccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCc-EEEEecCCCCCcCCccc--hH-HHHHHH
Q 006555 219 SGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTGS--LA-GAAAES 294 (640)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p-~ilV~NK~Dl~~~~~~~--~~-~~~~~~ 294 (640)
++.......+..+|++++|+|+.++....+.+.+.++... ++| +|+|+||+|+.+..... .. +....+
T Consensus 136 ------~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~--gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l 207 (447)
T PLN03127 136 ------DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV--GVPSLVVFLNKVDVVDDEELLELVEMELRELL 207 (447)
T ss_pred ------chHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc--CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence 4445555666789999999999999888888888888776 788 47889999997532210 11 111122
Q ss_pred HhcCC----CCcEEeecc---CCCC-------hhHHHHHhccchH
Q 006555 295 LMLGF----GDPIAISAE---TGLG-------MTELYEALRPSVE 325 (640)
Q Consensus 295 ~~~g~----~~~i~iSA~---~g~g-------i~eL~~~I~~~l~ 325 (640)
...++ -+++++||. +|.| +.+|++.+.+.++
T Consensus 208 ~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 208 SFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 22333 245777775 5555 5677777665543
No 453
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.57 E-value=3.1e-14 Score=161.03 Aligned_cols=147 Identities=29% Similarity=0.415 Sum_probs=101.9
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCcee--------e------cCcccceeeeEEEEEEEC-----CeEEEEEEeCCCCcc
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVL--------V------GPEAGLTRDSVRVHFEYQ-----GRTVYLVDTAGWLQR 418 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~--------~------~~~~gtT~d~~~~~~~~~-----~~~~~liDTpG~~~~ 418 (640)
.+++|+|+.++|||||+.+|+.....+ + ....|.|.......+.|. +..+.||||||+.++
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 479999999999999999998632111 1 123477776655555553 467899999998654
Q ss_pred cccCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHH
Q 006555 419 EKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQ 488 (640)
Q Consensus 419 ~~~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~ 488 (640)
. ....++++.+|++|+|+|++++ .....++|+|+|+||+|+..... .. .. .
T Consensus 88 ~----------~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~-~~----v~----~ 148 (600)
T PRK05433 88 S----------YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADP-ER----VK----Q 148 (600)
T ss_pred H----------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccH-HH----HH----H
Confidence 2 2244678899999999999874 22346899999999999865321 11 11 1
Q ss_pred HHHhhCCCCCCCcEEEeccccCCCHHHHHHHHHHHH
Q 006555 489 EIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 489 ~~~~~~~~~~~~~~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
++...+. .....++++||++|.|++++++.+.+.+
T Consensus 149 ei~~~lg-~~~~~vi~iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 149 EIEDVIG-IDASDAVLVSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred HHHHHhC-CCcceEEEEecCCCCCHHHHHHHHHHhC
Confidence 2222211 1122489999999999999999987754
No 454
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.56 E-value=3.5e-14 Score=148.23 Aligned_cols=86 Identities=30% Similarity=0.297 Sum_probs=66.3
Q ss_pred EEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEE------------------------CCeEEEEEEeCCC
Q 006555 360 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY------------------------QGRTVYLVDTAGW 415 (640)
Q Consensus 360 v~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~------------------------~~~~~~liDTpG~ 415 (640)
|+++|.||||||||+|+|++.. +.++++|++|+++..+...+ .+.++.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 5899999999999999999765 68899999999987765443 2257899999998
Q ss_pred CcccccCCchhhHHHHHHHHHhhccEEEEEeccc
Q 006555 416 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAE 449 (640)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~i~~advvllVvDa~ 449 (640)
..... .+ ..+ ..+.+..++.||++++|+|++
T Consensus 80 v~ga~-~~-~gl-g~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 80 VPGAH-EG-KGL-GNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCCcc-ch-hhH-HHHHHHHHHHCCEEEEEEeCC
Confidence 65421 11 111 235667899999999999997
No 455
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.56 E-value=2.1e-15 Score=137.87 Aligned_cols=167 Identities=18% Similarity=0.202 Sum_probs=127.1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEE--CCeeEEEEeCCCCccccCccchHHHHHHHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMT 230 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 230 (640)
..+++|||..+|||||++.+++..-+..-+.. ++..|.....+.+ ++.+.++|||+|++ ++-..+
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdykk---tIgvdflerqi~v~~Edvr~mlWdtagqe----------EfDaIt 86 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKK---TIGVDFLERQIKVLIEDVRSMLWDTAGQE----------EFDAIT 86 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhcccccccccc---ccchhhhhHHHHhhHHHHHHHHHHhccch----------hHHHHH
Confidence 46999999999999999999996533221111 1334444444333 45688999999998 666788
Q ss_pred HHHHhccceEEEEeecCCCCChhh-HHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccC
Q 006555 231 ANVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 309 (640)
Q Consensus 231 ~~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~ 309 (640)
..|++.|...++|+.-++..+++- .++.+.+.+....+|.++|-||+|+.++......+....+..+.. ..+.+|++.
T Consensus 87 kAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~-RlyRtSvke 165 (246)
T KOG4252|consen 87 KAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHK-RLYRTSVKE 165 (246)
T ss_pred HHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhh-hhhhhhhhh
Confidence 899999999999999998877774 344455555667899999999999998776666665556666655 678999999
Q ss_pred CCChhHHHHHhccchHHHHhhhhc
Q 006555 310 GLGMTELYEALRPSVEDYMLRVLN 333 (640)
Q Consensus 310 g~gi~eL~~~I~~~l~~~~~~~~~ 333 (640)
..|+.++|..+.+.+...+.+.++
T Consensus 166 d~NV~~vF~YLaeK~~q~~kq~~~ 189 (246)
T KOG4252|consen 166 DFNVMHVFAYLAEKLTQQKKQSLN 189 (246)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999988776655443
No 456
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.55 E-value=1.2e-13 Score=137.27 Aligned_cols=160 Identities=18% Similarity=0.212 Sum_probs=109.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEEC--CeeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
.+|+++|.+|||||||+++|.+.......... .+........... ..++.+|||+|++ ++.....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t---~~~~~~~~~~~~~~~~~~~~~~Dt~gq~----------~~~~~~~ 72 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPT---IGNLDPAKTIEPYRRNIKLQLWDTAGQE----------EYRSLRP 72 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCc---eeeeeEEEEEEeCCCEEEEEeecCCCHH----------HHHHHHH
Confidence 58999999999999999999998765433222 2222222222222 4679999999998 6667788
Q ss_pred HHHhccceEEEEeecCCCCChhh--HHHHHHHHHhC-CCCcEEEEecCCCCCcCCcc------------chHHHHHHHHh
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKHA-PQIKPIVAMNKCESLHNGTG------------SLAGAAAESLM 296 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~--~~~~~~L~~~~-~~~p~ilV~NK~Dl~~~~~~------------~~~~~~~~~~~ 296 (640)
.++..++++++++|........+ ..+.+.++... .+.|+++|+||+|+...... ...........
T Consensus 73 ~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (219)
T COG1100 73 EYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVL 152 (219)
T ss_pred HHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhh
Confidence 89999999999999987333332 33444455544 36899999999999876421 11111111111
Q ss_pred c--CCCCcEEeecc--CCCChhHHHHHhccchHH
Q 006555 297 L--GFGDPIAISAE--TGLGMTELYEALRPSVED 326 (640)
Q Consensus 297 ~--g~~~~i~iSA~--~g~gi~eL~~~I~~~l~~ 326 (640)
. ....++++||+ .+.++.+++..+...+.+
T Consensus 153 ~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 153 PEVANPALLETSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred hhhcccceeEeecccCCCcCHHHHHHHHHHHHHH
Confidence 1 12237999999 999999999998877754
No 457
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.55 E-value=8.4e-14 Score=136.62 Aligned_cols=158 Identities=20% Similarity=0.227 Sum_probs=96.5
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEEC-----C--eEEEEEEeCCCCcccccCCchhhHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ-----G--RTVYLVDTAGWLQREKEKGPASLSVM 430 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~-----~--~~~~liDTpG~~~~~~~~~~~~~~~~ 430 (640)
+||+++|.++||||||++++++... .....+.+..+.....+.++ + ..+.||||+|..+. ...
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f-~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~---------~~l 70 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQV-LGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV---------KST 70 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH---------HHH
Confidence 4899999999999999999997642 22222222223333334442 2 36789999996433 222
Q ss_pred HHHHHHhhccEEEEEecccHH-----------HHHH----------------------cCCcEEEEEeCCCCCCCccchH
Q 006555 431 QSRKNLMRAHVVALVLDAEEV-----------RAVE----------------------EGRGLVVIVNKMDLLSGRQNSA 477 (640)
Q Consensus 431 ~~~~~i~~advvllVvDa~~~-----------~~~~----------------------~~~p~Ilv~NK~Dl~~~~~~~~ 477 (640)
...+++++|++|+|+|.++. .... .+.|+|||+||+|+.+.+....
T Consensus 71 -~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~ 149 (202)
T cd04102 71 -RAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSG 149 (202)
T ss_pred -HHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccch
Confidence 23578899999999999886 1111 2579999999999976432111
Q ss_pred HHHHHHHHcHHHHHhhCCCCCCCcEEEeccccCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 006555 478 LYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGR 546 (640)
Q Consensus 478 ~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g~gv~~l~~~i~~~~~~~~~~i~t~~l~~~l~~~~~~ 546 (640)
... + .-...++...+++.++.+++....+.. ..-...+|.++++.++++
T Consensus 150 ~~~-~------~~~~~ia~~~~~~~i~~~c~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 198 (202)
T cd04102 150 NLV-L------TARGFVAEQGNAEEINLNCTNGRLLAA-------------GSSDAVKLSRFFDKVIEK 198 (202)
T ss_pred HHH-h------hHhhhHHHhcCCceEEEecCCcccccC-------------CCccHHHHHHHHHHHHHh
Confidence 000 0 001122334477888888887655411 111345666677666654
No 458
>PRK12739 elongation factor G; Reviewed
Probab=99.55 E-value=4.7e-14 Score=163.13 Aligned_cols=117 Identities=18% Similarity=0.162 Sum_probs=96.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCC-----ceeecC------------CCCCceeeeeEEEEEEECCeeEEEEeCCCCc
Q 006555 152 LLPTVMIIGRPNVGKSALFNRLIRRR-----EALVYN------------TPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 214 (640)
Q Consensus 152 ~~~~V~lvG~~nvGKSSLin~L~~~~-----~~~v~~------------~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~ 214 (640)
.+..|+|+|++|+|||||+|+|+... ...+.+ ..| +|.+.....+.+++.++.+|||||+.
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rg--iti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERG--ITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcC--CCccceeEEEEECCEEEEEEcCCCHH
Confidence 35689999999999999999997531 111221 234 88888888899999999999999987
Q ss_pred cccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcC
Q 006555 215 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 282 (640)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~ 282 (640)
++...+..++..+|++++|+|+.++....+..++..+.+. ++|.|+++||+|+...
T Consensus 85 ----------~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~--~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 85 ----------DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY--GVPRIVFVNKMDRIGA 140 (691)
T ss_pred ----------HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEEEEEECCCCCCC
Confidence 4555678889999999999999999888888888887776 7899999999998753
No 459
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.55 E-value=2.5e-14 Score=155.48 Aligned_cols=152 Identities=22% Similarity=0.216 Sum_probs=95.7
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCc--eeecCcccceeeeEEEEEE--------------------E------CCeEE
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDR--VLVGPEAGLTRDSVRVHFE--------------------Y------QGRTV 407 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~--~~~~~~~gtT~d~~~~~~~--------------------~------~~~~~ 407 (640)
..++|+++|++++|||||+++|.+... .......|.|.+.....+. . .+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 357999999999999999999986421 1111122444432211110 0 14678
Q ss_pred EEEEeCCCCcccccCCchhhHHHHHHHHHhhccEEEEEecccHH----------H-HHHcC-CcEEEEEeCCCCCCCccc
Q 006555 408 YLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------R-AVEEG-RGLVVIVNKMDLLSGRQN 475 (640)
Q Consensus 408 ~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~-~~~~~-~p~Ilv~NK~Dl~~~~~~ 475 (640)
.+|||||+.++. ..+......+|++++|+|++++ . ....+ +|+|+|+||+|+.+....
T Consensus 83 ~liDtPGh~~f~----------~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~ 152 (406)
T TIGR03680 83 SFVDAPGHETLM----------ATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKA 152 (406)
T ss_pred EEEECCCHHHHH----------HHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHH
Confidence 999999964331 2334556679999999999852 1 11233 579999999999764322
Q ss_pred hHHHHHHHHHcHHHHHhhCCCCCCCcEEEeccccCCCHHHHHHHHHHH
Q 006555 476 SALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 476 ~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
.+.++.+.+ .+... .....+++++||++|.|++++++.+...
T Consensus 153 ~~~~~~i~~----~l~~~--~~~~~~ii~vSA~~g~gi~~L~e~L~~~ 194 (406)
T TIGR03680 153 LENYEEIKE----FVKGT--VAENAPIIPVSALHNANIDALLEAIEKF 194 (406)
T ss_pred HHHHHHHHh----hhhhc--ccCCCeEEEEECCCCCChHHHHHHHHHh
Confidence 222222221 11111 1235789999999999999999888754
No 460
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.55 E-value=2.8e-14 Score=150.85 Aligned_cols=185 Identities=20% Similarity=0.228 Sum_probs=124.6
Q ss_pred HHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEE
Q 006555 225 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 304 (640)
Q Consensus 225 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~ 304 (640)
++.++.+..++.+|+||.+||+++++-+.-..+.+++....+.+..+|++||+|+..+.. .......|...++ .++.
T Consensus 163 E~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~q--r~aWa~YF~~~ni-~~vf 239 (562)
T KOG1424|consen 163 EIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQ--RVAWAEYFRQNNI-PVVF 239 (562)
T ss_pred HHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHH--HHHHHHHHHhcCc-eEEE
Confidence 677889999999999999999999988887788888888777788999999999998643 3445556767776 7788
Q ss_pred eeccCC----C--ChhHHHHHhccchHH-----------HHhhhhccccccCCC-------CC-CCCCCCCcccccCCce
Q 006555 305 ISAETG----L--GMTELYEALRPSVED-----------YMLRVLNDSCTQNNS-------ST-QDVTSPEDDESKLPLQ 359 (640)
Q Consensus 305 iSA~~g----~--gi~eL~~~I~~~l~~-----------~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~k 359 (640)
.||... + ++.+-.......... .+.+.. .. ..+.. .. .+.. ......+..+.
T Consensus 240 ~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~-~d-~~e~~~v~~~~~~s~~~~~-~t~~~~~~~vt 316 (562)
T KOG1424|consen 240 FSALAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDK-GD-GEEIEDVEQLRLISAMEPT-PTGERYKDVVT 316 (562)
T ss_pred Eecccccccccccchhhhhhcccchhhhccccccccchhhhhhhc-cc-ccchhhHHhhhhhhccccC-CCCcCCCceeE
Confidence 888651 1 111111111000000 000000 00 00000 00 0000 00111112478
Q ss_pred EEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcc
Q 006555 360 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 418 (640)
Q Consensus 360 v~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~ 418 (640)
|++||.|||||||+||+|.|.....|+.+||-|++++...++ ..+.|.|.||+.-+
T Consensus 317 VG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls---~~v~LCDCPGLVfP 372 (562)
T KOG1424|consen 317 VGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS---PSVCLCDCPGLVFP 372 (562)
T ss_pred EEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC---CCceecCCCCcccc
Confidence 999999999999999999999999999999999998876654 56789999998765
No 461
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.55 E-value=1.3e-13 Score=139.48 Aligned_cols=131 Identities=17% Similarity=0.255 Sum_probs=96.0
Q ss_pred cCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHH
Q 006555 151 NLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMT 230 (640)
Q Consensus 151 ~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 230 (640)
....+|+|+|.+|||||||+|+|++...+.++...+ +|+........+++.++.+|||||+.+....+..........
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~--~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQS--ETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCC--ceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 345699999999999999999999998777766655 677777777778899999999999985532222222333334
Q ss_pred HHHHh--ccceEEEEeecCC-CCChhhHHHHHHHHHhCC---CCcEEEEecCCCCCcCC
Q 006555 231 ANVLA--KTQFAIFMIDVRS-GLHPLDLEVGKWLRKHAP---QIKPIVAMNKCESLHNG 283 (640)
Q Consensus 231 ~~~~~--~ad~vl~VvD~s~-~~~~~~~~~~~~L~~~~~---~~p~ilV~NK~Dl~~~~ 283 (640)
..++. ..|++++|...+. +.+..+..+++.+++.+. -.++++|+||+|...+.
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 44554 5688888876653 456677788888877432 25799999999997654
No 462
>PLN00023 GTP-binding protein; Provisional
Probab=99.54 E-value=8.6e-14 Score=143.37 Aligned_cols=136 Identities=17% Similarity=0.166 Sum_probs=93.8
Q ss_pred cCCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEEC---------------CeeEEEEeCCCCcc
Q 006555 151 NLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG---------------DLRFKVLDSAGLET 215 (640)
Q Consensus 151 ~~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~---------------~~~~~liDTpG~~~ 215 (640)
....+|+|+|..+||||||++++++...... ..+ ++..+.....+.++ ...+.||||+|++
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~-~~p--TIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE- 94 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIAR-PPQ--TIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE- 94 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccc-cCC--ceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh-
Confidence 3456999999999999999999998754211 112 13334333444432 2569999999998
Q ss_pred ccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhH-HHHHHHHHhC-------------CCCcEEEEecCCCCCc
Q 006555 216 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHA-------------PQIKPIVAMNKCESLH 281 (640)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~L~~~~-------------~~~p~ilV~NK~Dl~~ 281 (640)
++..+...+++.+|++|+|+|+++..+.++. .+++.+.... .+.|++||+||+|+..
T Consensus 95 ---------rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 95 ---------RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred ---------hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 6667778889999999999999987666542 2333343321 1479999999999975
Q ss_pred CCc------cchHHHHHHHHhcCC
Q 006555 282 NGT------GSLAGAAAESLMLGF 299 (640)
Q Consensus 282 ~~~------~~~~~~~~~~~~~g~ 299 (640)
... +..++....+...|+
T Consensus 166 ~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 166 KEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred cccccccccccHHHHHHHHHHcCC
Confidence 421 134556666777765
No 463
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.54 E-value=3.9e-14 Score=145.73 Aligned_cols=150 Identities=15% Similarity=0.212 Sum_probs=103.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeec---CCCC------------CceeeeeEEEEEEECCeeEEEEeCCCCccccCc
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVY---NTPD------------DHVTRDIREGLAKLGDLRFKVLDSAGLETEATS 219 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~---~~~~------------~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 219 (640)
.|+|+|.+|+|||||+|+|+.....+.. ...| ...|.......+.+++.++.+|||||+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~----- 75 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYA----- 75 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHH-----
Confidence 3899999999999999999854321100 0011 1133444556677888999999999987
Q ss_pred cchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHH-hcC
Q 006555 220 GSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESL-MLG 298 (640)
Q Consensus 220 ~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~-~~g 298 (640)
++...+..++..+|++++|+|++.+.......+++++... ++|.++|+||+|+..... ........ .++
T Consensus 76 -----~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~--~~p~iivvNK~D~~~~~~---~~~~~~l~~~~~ 145 (268)
T cd04170 76 -----DFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEA--GIPRIIFINKMDRERADF---DKTLAALQEAFG 145 (268)
T ss_pred -----HHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEEEEEECCccCCCCH---HHHHHHHHHHhC
Confidence 5556677889999999999999998777666666766665 789999999999876422 22222222 234
Q ss_pred CCCc--EEeeccCCCChhHHHHHh
Q 006555 299 FGDP--IAISAETGLGMTELYEAL 320 (640)
Q Consensus 299 ~~~~--i~iSA~~g~gi~eL~~~I 320 (640)
. .+ +.++..+|.|+..+.+.+
T Consensus 146 ~-~~~~~~ip~~~~~~~~~~vd~~ 168 (268)
T cd04170 146 R-PVVPLQLPIGEGDDFKGVVDLL 168 (268)
T ss_pred C-CeEEEEecccCCCceeEEEEcc
Confidence 3 33 445577787776655544
No 464
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=3.6e-14 Score=150.63 Aligned_cols=147 Identities=26% Similarity=0.354 Sum_probs=113.5
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCc--------------eeecCcccceeeeEEEEEEECC---eEEEEEEeCCCCcccc
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDR--------------VLVGPEAGLTRDSVRVHFEYQG---RTVYLVDTAGWLQREK 420 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~--------------~~~~~~~gtT~d~~~~~~~~~~---~~~~liDTpG~~~~~~ 420 (640)
-+++|+-+...|||||..+|+.... ..+....|+|+..+...+.|.+ ..+.+|||||+.++..
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~ 140 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG 140 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence 4799999999999999999974322 1244667999998888887766 6778999999988842
Q ss_pred cCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHH
Q 006555 421 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEI 490 (640)
Q Consensus 421 ~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~ 490 (640)
+- .+.+..+|++|||+||+++ .+.+.+..+|.|+||+|+...+. +.+..++
T Consensus 141 EV----------sRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adp---------e~V~~q~ 201 (650)
T KOG0462|consen 141 EV----------SRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADP---------ERVENQL 201 (650)
T ss_pred ee----------hehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCH---------HHHHHHH
Confidence 21 1445569999999999987 45678999999999999987642 2333444
Q ss_pred HhhCCCCCCCcEEEeccccCCCHHHHHHHHHHHH
Q 006555 491 QTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 491 ~~~~~~~~~~~~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
.+.|.. ...+++.+|||+|.|+++++++|++.+
T Consensus 202 ~~lF~~-~~~~~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 202 FELFDI-PPAEVIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred HHHhcC-CccceEEEEeccCccHHHHHHHHHhhC
Confidence 444433 345899999999999999999999864
No 465
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.54 E-value=3.7e-14 Score=162.63 Aligned_cols=147 Identities=24% Similarity=0.306 Sum_probs=98.4
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCceeecC----------c----------------------ccceeeeEEEEEEEC
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGP----------E----------------------AGLTRDSVRVHFEYQ 403 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~----------~----------------------~gtT~d~~~~~~~~~ 403 (640)
..++|+++|++|+|||||+++|+.....+... . .|+|+|.....++++
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 35799999999999999999999765444311 2 255666666677778
Q ss_pred CeEEEEEEeCCCCcccccCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcC-CcEEEEEeCCCCCCC
Q 006555 404 GRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEG-RGLVVIVNKMDLLSG 472 (640)
Q Consensus 404 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~-~p~Ilv~NK~Dl~~~ 472 (640)
+.++.|+||||+.++ . ......+..+|++++|+|+.++ .....+ +++|||+||+|+.+.
T Consensus 103 ~~~~~liDtPG~~~f---------~-~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~ 172 (632)
T PRK05506 103 KRKFIVADTPGHEQY---------T-RNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDY 172 (632)
T ss_pred CceEEEEECCChHHH---------H-HHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccc
Confidence 889999999996432 1 1233467789999999999754 111234 578999999999752
Q ss_pred ccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEeccccCCCHHHH
Q 006555 473 RQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAV 516 (640)
Q Consensus 473 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g~gv~~l 516 (640)
.. +.++.+...+..-+ ..+.. ...+++++||++|.|+++.
T Consensus 173 ~~--~~~~~i~~~i~~~~-~~~~~-~~~~iipiSA~~g~ni~~~ 212 (632)
T PRK05506 173 DQ--EVFDEIVADYRAFA-AKLGL-HDVTFIPISALKGDNVVTR 212 (632)
T ss_pred hh--HHHHHHHHHHHHHH-HHcCC-CCccEEEEecccCCCcccc
Confidence 21 12222322222111 12221 3468999999999998753
No 466
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.54 E-value=5.9e-14 Score=152.51 Aligned_cols=160 Identities=17% Similarity=0.085 Sum_probs=104.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCc--eeecCCCCCceeeeeEEEEEEE---------------------C-----Cee
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRRE--ALVYNTPDDHVTRDIREGLAKL---------------------G-----DLR 204 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~--~~v~~~~~~~tT~~~~~~~~~~---------------------~-----~~~ 204 (640)
...|+++|+.++|||||+.+|++... .......| .|.+.......+ + ...
T Consensus 9 ~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg--~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 9 EVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRG--ITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred cEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcC--cEEEecccccccccccccCccccccccccccccccccccccE
Confidence 35899999999999999999976311 00011123 444433221111 0 257
Q ss_pred EEEEeCCCCccccCccchHHHHHHHHHHHHhccceEEEEeecCCCC-ChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCC
Q 006555 205 FKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL-HPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNG 283 (640)
Q Consensus 205 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~-~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~ 283 (640)
+.+|||||+. ++.......+..+|++++|+|++++. .....+.+..+... ...|+++|+||+|+.++.
T Consensus 87 i~liDtPG~~----------~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~-~i~~iiVVlNK~Dl~~~~ 155 (411)
T PRK04000 87 VSFVDAPGHE----------TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII-GIKNIVIVQNKIDLVSKE 155 (411)
T ss_pred EEEEECCCHH----------HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEEeeccccch
Confidence 9999999986 55555666777889999999999876 55555555666543 234789999999997643
Q ss_pred ccc--hHHHHHHHHhcC--CCCcEEeeccCCCChhHHHHHhccchH
Q 006555 284 TGS--LAGAAAESLMLG--FGDPIAISAETGLGMTELYEALRPSVE 325 (640)
Q Consensus 284 ~~~--~~~~~~~~~~~g--~~~~i~iSA~~g~gi~eL~~~I~~~l~ 325 (640)
... ..+....+.... ..+++++||++|.|+++|++.|.+.++
T Consensus 156 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 156 RALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred hHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 211 111111111111 126799999999999999999887553
No 467
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.54 E-value=3.8e-14 Score=130.14 Aligned_cols=139 Identities=25% Similarity=0.255 Sum_probs=93.2
Q ss_pred EEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEE--CCeEEEEEEeCCCCcccccCCchhhHHHHHHHHHhhc
Q 006555 362 IVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY--QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRA 439 (640)
Q Consensus 362 ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~a 439 (640)
++|.+|+|||||+|++.+.... ......+..+........ .+..+.+|||||+.... ......+..+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----------~~~~~~~~~~ 69 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFR----------SLRRLYYRGA 69 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC-CcccccchhheeeEEEEECCEEEEEEEEecCChHHHH----------hHHHHHhcCC
Confidence 5799999999999999976532 122222223444334333 25678999999964331 1224566789
Q ss_pred cEEEEEecccHH-------H--------HHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEE
Q 006555 440 HVVALVLDAEEV-------R--------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVF 504 (640)
Q Consensus 440 dvvllVvDa~~~-------~--------~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~ 504 (640)
|++++|+|+++. . ....++|+++|+||+|+.......... ...........++++
T Consensus 70 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 139 (157)
T cd00882 70 DGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE----------LAEQLAKELGVPYFE 139 (157)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH----------HHHHHHhhcCCcEEE
Confidence 999999999976 1 112478999999999997653321110 011112234678999
Q ss_pred eccccCCCHHHHHHHHH
Q 006555 505 TSALEGRGRIAVMHQVI 521 (640)
Q Consensus 505 iSAk~g~gv~~l~~~i~ 521 (640)
+||+++.|+.++++++.
T Consensus 140 ~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 140 TSAKTGENVEELFEELA 156 (157)
T ss_pred EecCCCCChHHHHHHHh
Confidence 99999999999998875
No 468
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.54 E-value=1.4e-13 Score=141.08 Aligned_cols=104 Identities=25% Similarity=0.371 Sum_probs=76.4
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceee---------------cCc------ccceeeeEEEEEEECCeEEEEEEeCCCCc
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLV---------------GPE------AGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 417 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~---------------~~~------~gtT~d~~~~~~~~~~~~~~liDTpG~~~ 417 (640)
.|+++|++|+|||||+++|+.....+. .++ .|.+.......+++++.++.+|||||+.+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 699999999999999999985422211 111 13344445557788999999999999754
Q ss_pred ccccCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCC
Q 006555 418 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 472 (640)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~ 472 (640)
+. ..+..+++.+|++|+|+|++++ .....++|+++++||+|+...
T Consensus 84 f~----------~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 84 FS----------EDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred HH----------HHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCC
Confidence 32 2345678899999999999764 122358999999999998654
No 469
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.54 E-value=8.4e-14 Score=138.27 Aligned_cols=146 Identities=24% Similarity=0.287 Sum_probs=90.2
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceee------------------cCcccceeeeEEEEEEEC-----CeEEEEEEeCCC
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLV------------------GPEAGLTRDSVRVHFEYQ-----GRTVYLVDTAGW 415 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~------------------~~~~gtT~d~~~~~~~~~-----~~~~~liDTpG~ 415 (640)
+|+++|++++|||||+++|++...... ....|+|.+.....+.+. ...+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999987532221 111244444333333332 357889999997
Q ss_pred CcccccCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCc------cchHHH
Q 006555 416 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGR------QNSALY 479 (640)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~------~~~~~~ 479 (640)
.++. ..+..++..+|++|+|+|+++. .....++|+++|+||+|+...+ +....+
T Consensus 82 ~~f~----------~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~~l 151 (213)
T cd04167 82 VNFM----------DEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKL 151 (213)
T ss_pred cchH----------HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHHHH
Confidence 5441 2345677889999999999764 1223579999999999986221 111222
Q ss_pred HHHHHHcHHHHHhhCCC--C----CCCcEEEeccccCCCHH
Q 006555 480 KRVKEAVPQEIQTVIPQ--V----TGIPVVFTSALEGRGRI 514 (640)
Q Consensus 480 ~~~~~~v~~~~~~~~~~--~----~~~~~v~iSAk~g~gv~ 514 (640)
+...+.+...+...-.. . .+..+++.||+.+.++.
T Consensus 152 ~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 152 RHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 22333333333222110 0 12348899999998764
No 470
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=4.9e-14 Score=149.62 Aligned_cols=165 Identities=21% Similarity=0.254 Sum_probs=125.3
Q ss_pred ccccCCCEEEEEeCCCCCHHHHHHHHHcCCcee--------------ecCCCCCceeeeeEEEEEEECC---eeEEEEeC
Q 006555 148 IDINLLPTVMIIGRPNVGKSALFNRLIRRREAL--------------VYNTPDDHVTRDIREGLAKLGD---LRFKVLDS 210 (640)
Q Consensus 148 ~~~~~~~~V~lvG~~nvGKSSLin~L~~~~~~~--------------v~~~~~~~tT~~~~~~~~~~~~---~~~~liDT 210 (640)
.+.+.+..++||-+-..|||||..+|+.-...+ +...-| +|...+...+.+.+ ..+.+|||
T Consensus 55 ~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERG--ITIkaQtasify~~~~~ylLNLIDT 132 (650)
T KOG0462|consen 55 DPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERG--ITIKAQTASIFYKDGQSYLLNLIDT 132 (650)
T ss_pred CchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcC--cEEEeeeeEEEEEcCCceEEEeecC
Confidence 344556789999999999999999998543211 112233 77777777777766 88999999
Q ss_pred CCCccccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHH
Q 006555 211 AGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGA 290 (640)
Q Consensus 211 pG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~ 290 (640)
||+.+. .....+.+.-+|.+|+|||+++|...+.... +......+..+|.|+||+|++..+.+..+..
T Consensus 133 PGHvDF----------s~EVsRslaac~G~lLvVDA~qGvqAQT~an--f~lAfe~~L~iIpVlNKIDlp~adpe~V~~q 200 (650)
T KOG0462|consen 133 PGHVDF----------SGEVSRSLAACDGALLVVDASQGVQAQTVAN--FYLAFEAGLAIIPVLNKIDLPSADPERVENQ 200 (650)
T ss_pred CCcccc----------cceehehhhhcCceEEEEEcCcCchHHHHHH--HHHHHHcCCeEEEeeeccCCCCCCHHHHHHH
Confidence 999943 3444566778999999999999988875433 3223233789999999999998776555555
Q ss_pred HHHHHhcCCCCcEEeeccCCCChhHHHHHhccchHH
Q 006555 291 AAESLMLGFGDPIAISAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 291 ~~~~~~~g~~~~i~iSA~~g~gi~eL~~~I~~~l~~ 326 (640)
......+...+++.+||++|.|+++++++|.+.++.
T Consensus 201 ~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 201 LFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred HHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCC
Confidence 666666666789999999999999999999998865
No 471
>PRK00007 elongation factor G; Reviewed
Probab=99.53 E-value=1e-13 Score=160.27 Aligned_cols=116 Identities=17% Similarity=0.154 Sum_probs=95.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc---CC--ceeec------------CCCCCceeeeeEEEEEEECCeeEEEEeCCCCc
Q 006555 152 LLPTVMIIGRPNVGKSALFNRLIR---RR--EALVY------------NTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 214 (640)
Q Consensus 152 ~~~~V~lvG~~nvGKSSLin~L~~---~~--~~~v~------------~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~ 214 (640)
.+..|+|+|++|+|||||+|+|+. .. ...+. ...| +|.+.....+.+.+.++.++||||+.
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg--~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERG--ITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCC--CCEeccEEEEEECCeEEEEEeCCCcH
Confidence 356899999999999999999973 21 11122 1334 78888888899999999999999987
Q ss_pred cccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCc
Q 006555 215 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLH 281 (640)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~ 281 (640)
++...+...+..+|++++|+|+..+....+..++..+.+. ++|.|+++||+|+..
T Consensus 87 ----------~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~--~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 87 ----------DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKY--KVPRIAFVNKMDRTG 141 (693)
T ss_pred ----------HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHc--CCCEEEEEECCCCCC
Confidence 4445577888999999999999999999988888888876 789999999999874
No 472
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.53 E-value=4.7e-14 Score=125.27 Aligned_cols=151 Identities=18% Similarity=0.138 Sum_probs=115.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHHHH
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 233 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 233 (640)
..+.++|..|+|||||+|.+...... ...+ -|+......++-++..+.+||.||+- ++..+...|
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~---edmi--ptvGfnmrk~tkgnvtiklwD~gGq~----------rfrsmWery 85 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYL---EDMI--PTVGFNMRKVTKGNVTIKLWDLGGQP----------RFRSMWERY 85 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccch---hhhc--ccccceeEEeccCceEEEEEecCCCc----------cHHHHHHHH
Confidence 47999999999999999998765432 2333 46666677777788999999999998 788899999
Q ss_pred HhccceEEEEeecCCCCCh--hhHHHHHHHHH-hCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCC-------CcE
Q 006555 234 LAKTQFAIFMIDVRSGLHP--LDLEVGKWLRK-HAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFG-------DPI 303 (640)
Q Consensus 234 ~~~ad~vl~VvD~s~~~~~--~~~~~~~~L~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~-------~~i 303 (640)
++..+++++|+|++++... ...++.+.|.+ ...++|+++.+||.|+...-. .......+|+. -++
T Consensus 86 cR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~-----~~~li~rmgL~sitdREvcC~ 160 (186)
T KOG0075|consen 86 CRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS-----KIALIERMGLSSITDREVCCF 160 (186)
T ss_pred hhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc-----HHHHHHHhCccccccceEEEE
Confidence 9999999999999985332 22445555544 245899999999999987532 22233445543 248
Q ss_pred EeeccCCCChhHHHHHhccch
Q 006555 304 AISAETGLGMTELYEALRPSV 324 (640)
Q Consensus 304 ~iSA~~g~gi~eL~~~I~~~l 324 (640)
.|||+...|++-+.++|.+.-
T Consensus 161 siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 161 SISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred EEEEcCCccHHHHHHHHHHHh
Confidence 999999999999999988654
No 473
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.53 E-value=1.4e-13 Score=155.01 Aligned_cols=156 Identities=20% Similarity=0.295 Sum_probs=94.0
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCceeecCccc-ceeeeEEEEEEEC------C------------eEEEEEEeCCCC
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAG-LTRDSVRVHFEYQ------G------------RTVYLVDTAGWL 416 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~g-tT~d~~~~~~~~~------~------------~~~~liDTpG~~ 416 (640)
++..|+++|++|+|||||+++|.+.. .....+| .|.+........+ + ..+.+|||||+.
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~--v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTA--VAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcc--cccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 34579999999999999999998763 3333332 3333211111110 1 126899999975
Q ss_pred cccccCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCcc---c--------
Q 006555 417 QREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQ---N-------- 475 (640)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~---~-------- 475 (640)
++ ..+. ...+..+|++++|+|++++ .....++|+++++||+|+..... .
T Consensus 83 ~f---------~~~~-~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~ 152 (586)
T PRK04004 83 AF---------TNLR-KRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIE 152 (586)
T ss_pred HH---------HHHH-HHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHh
Confidence 43 2122 2455679999999999873 22346899999999999853100 0
Q ss_pred ---hHHHHHHHH---HcHHHHHhh-C---------CCCCCCcEEEeccccCCCHHHHHHHHHHH
Q 006555 476 ---SALYKRVKE---AVPQEIQTV-I---------PQVTGIPVVFTSALEGRGRIAVMHQVIDT 523 (640)
Q Consensus 476 ---~~~~~~~~~---~v~~~~~~~-~---------~~~~~~~~v~iSAk~g~gv~~l~~~i~~~ 523 (640)
....+.+.+ .+...+... + .....++++++||++|.|++++++.+...
T Consensus 153 ~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 153 KQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 000011100 111111100 0 11235789999999999999999887543
No 474
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.53 E-value=1.2e-13 Score=137.23 Aligned_cols=114 Identities=18% Similarity=0.233 Sum_probs=82.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCceeecCCCC-------------CceeeeeEEEEEEEC----------CeeEEEEeCC
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREALVYNTPD-------------DHVTRDIREGLAKLG----------DLRFKVLDSA 211 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~-------------~~tT~~~~~~~~~~~----------~~~~~liDTp 211 (640)
.|+++|..++|||||+.+|+.....+.....+ .+.|.........+. +..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 69999999999999999998643221111111 012222211122222 5789999999
Q ss_pred CCccccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCC
Q 006555 212 GLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESL 280 (640)
Q Consensus 212 G~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~ 280 (640)
|+. ++...+..++..+|++++|+|+.++.+.....+++.+... ++|+++|+||+|+.
T Consensus 82 G~~----------~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~--~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHV----------DFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE--RVKPVLVINKIDRL 138 (222)
T ss_pred Ccc----------ccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEECCCcc
Confidence 998 4556778889999999999999999888877777666554 68999999999986
No 475
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.53 E-value=1.1e-13 Score=160.07 Aligned_cols=105 Identities=24% Similarity=0.277 Sum_probs=83.6
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCcee-----ecC------------cccceeeeEEEEEEECCeEEEEEEeCCCCcccc
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVL-----VGP------------EAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 420 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~-----~~~------------~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~ 420 (640)
.+|+|+|++|+|||||+|+|++....+ +.+ ..|+|++.....+++++.++.+|||||+.++.
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~- 89 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT- 89 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh-
Confidence 489999999999999999997533221 111 45889998889999999999999999986542
Q ss_pred cCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCC
Q 006555 421 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 472 (640)
Q Consensus 421 ~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~ 472 (640)
..+..+++.+|++++|+|++++ .....++|+++++||+|+...
T Consensus 90 ---------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 90 ---------VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred ---------HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 2345778899999999999875 223468999999999999754
No 476
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.53 E-value=1.1e-13 Score=148.73 Aligned_cols=88 Identities=31% Similarity=0.306 Sum_probs=68.3
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEE------------------------CCeEEEEEEeC
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY------------------------QGRTVYLVDTA 413 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~------------------------~~~~~~liDTp 413 (640)
++|+|+|.||||||||+|+|++.. ..+++++++|+++..+...+ ...++++||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~-~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 689999999999999999999875 56789999999988765442 12467899999
Q ss_pred CCCcccccCCchhhHHHHHHHHHhhccEEEEEeccc
Q 006555 414 GWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAE 449 (640)
Q Consensus 414 G~~~~~~~~~~~~~~~~~~~~~i~~advvllVvDa~ 449 (640)
|+.+... .+ .. ...+.+..++.||++++|+|+.
T Consensus 81 Gl~~ga~-~g-~g-lg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGAH-EG-RG-LGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CcCCCcc-ch-hh-HHHHHHHHHHHCCEEEEEEeCC
Confidence 9875421 11 11 2245677899999999999996
No 477
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.52 E-value=1.1e-13 Score=137.48 Aligned_cols=102 Identities=25% Similarity=0.390 Sum_probs=73.5
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeecC---------------cccceeeeEEEEEEEC----------CeEEEEEEeC
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGP---------------EAGLTRDSVRVHFEYQ----------GRTVYLVDTA 413 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~~---------------~~gtT~d~~~~~~~~~----------~~~~~liDTp 413 (640)
.|+++|+.++|||||+.+|+.....+... ..|.|.+.....+.+. +..+.|||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 58999999999999999998654322111 1244444333333333 5678899999
Q ss_pred CCCcccccCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCC
Q 006555 414 GWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLL 470 (640)
Q Consensus 414 G~~~~~~~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~ 470 (640)
|+.++. ..+..+++.+|++++|+|++++ .....++|+|+|+||+|+.
T Consensus 82 G~~~f~----------~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFS----------SEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CccccH----------HHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 986542 2345778899999999999875 2334678999999999986
No 478
>PLN03126 Elongation factor Tu; Provisional
Probab=99.52 E-value=1.5e-13 Score=151.22 Aligned_cols=147 Identities=16% Similarity=0.078 Sum_probs=107.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceee---------------cCCCCCceeeeeEEEEEEECCeeEEEEeCCCCcccc
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALV---------------YNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 217 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v---------------~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 217 (640)
...|+++|++++|||||+++|++....+. ....| +|.+.....+..++.++.+|||||+.
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rG--iTi~~~~~~~~~~~~~i~liDtPGh~--- 155 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARG--ITINTATVEYETENRHYAHVDCPGHA--- 155 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCC--eeEEEEEEEEecCCcEEEEEECCCHH---
Confidence 45899999999999999999995321110 11233 77777777777788999999999997
Q ss_pred CccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCc-EEEEecCCCCCcCCccc--hH-HHHHH
Q 006555 218 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTGS--LA-GAAAE 293 (640)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p-~ilV~NK~Dl~~~~~~~--~~-~~~~~ 293 (640)
++.......+..+|++++|+|+.++......+.+..+... ++| +|+++||+|+....+.. .. +....
T Consensus 156 -------~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~ 226 (478)
T PLN03126 156 -------DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV--GVPNMVVFLNKQDQVDDEELLELVELEVREL 226 (478)
T ss_pred -------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEecccccCHHHHHHHHHHHHHHH
Confidence 5666677788899999999999999888877777777666 778 77899999997532210 11 22233
Q ss_pred HHhcCCC----CcEEeeccCCCCh
Q 006555 294 SLMLGFG----DPIAISAETGLGM 313 (640)
Q Consensus 294 ~~~~g~~----~~i~iSA~~g~gi 313 (640)
+...|+. +++++||.+|.++
T Consensus 227 l~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 227 LSSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred HHhcCCCcCcceEEEEEccccccc
Confidence 3444442 5689999988543
No 479
>PRK12739 elongation factor G; Reviewed
Probab=99.52 E-value=8.7e-14 Score=160.92 Aligned_cols=106 Identities=25% Similarity=0.318 Sum_probs=84.5
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCce-----eec------------CcccceeeeEEEEEEECCeEEEEEEeCCCCccc
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRV-----LVG------------PEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 419 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~-----~~~------------~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~ 419 (640)
-.+|+|+|++|+|||||+++|+..... .+. ...|+|++.....+.+++.++.+|||||+.++
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f- 86 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF- 86 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH-
Confidence 357999999999999999999753211 112 25689999988999999999999999997442
Q ss_pred ccCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCC
Q 006555 420 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 472 (640)
Q Consensus 420 ~~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~ 472 (640)
. ..+..+++.+|++|+|+|+.++ .....++|+|+++||||+...
T Consensus 87 --------~-~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 87 --------T-IEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred --------H-HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 1 2466788899999999999865 233568999999999999854
No 480
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.51 E-value=1.2e-13 Score=159.96 Aligned_cols=143 Identities=16% Similarity=0.141 Sum_probs=105.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcee-----ecC------------CCCCceeeeeEEEEEEECCeeEEEEeCCCCc
Q 006555 152 LLPTVMIIGRPNVGKSALFNRLIRRREAL-----VYN------------TPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 214 (640)
Q Consensus 152 ~~~~V~lvG~~nvGKSSLin~L~~~~~~~-----v~~------------~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~ 214 (640)
.+..|+|+|++|+|||||+|+|+.....+ +.+ ..| +|.+.....+.+++.++.+|||||+.
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rg--iti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERG--ITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcC--CCEecceEEEEECCeEEEEEECCCCc
Confidence 45689999999999999999997432111 111 123 78888888999999999999999997
Q ss_pred cccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHH
Q 006555 215 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAES 294 (640)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~ 294 (640)
++...+..+++.+|++++|+|+.++....+..+++++++. ++|+++|+||+|+...... .......
T Consensus 87 ----------~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~p~ivviNK~D~~~~~~~--~~~~~i~ 152 (689)
T TIGR00484 87 ----------DFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY--EVPRIAFVNKMDKTGANFL--RVVNQIK 152 (689)
T ss_pred ----------chhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc--CCCEEEEEECCCCCCCCHH--HHHHHHH
Confidence 3334566788999999999999998888877787777765 7899999999999864311 1111222
Q ss_pred HhcCCC---CcEEeeccCC
Q 006555 295 LMLGFG---DPIAISAETG 310 (640)
Q Consensus 295 ~~~g~~---~~i~iSA~~g 310 (640)
..++.. ..+++||.++
T Consensus 153 ~~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 153 QRLGANAVPIQLPIGAEDN 171 (689)
T ss_pred HHhCCCceeEEeccccCCC
Confidence 333432 3578888776
No 481
>PRK00007 elongation factor G; Reviewed
Probab=99.51 E-value=1.6e-13 Score=158.73 Aligned_cols=105 Identities=22% Similarity=0.242 Sum_probs=83.7
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCc---e--eec------------CcccceeeeEEEEEEECCeEEEEEEeCCCCcccc
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDR---V--LVG------------PEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 420 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~---~--~~~------------~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~ 420 (640)
.+|+|+|++|+|||||+++|+.... . .+. ...|+|++.....+.+.+.++.++||||+.++.
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~- 89 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFT- 89 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHH-
Confidence 5899999999999999999973211 1 122 356899999888999999999999999975431
Q ss_pred cCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCC
Q 006555 421 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 472 (640)
Q Consensus 421 ~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~ 472 (640)
..+..++..+|++|+|+|+.++ .....++|+|+++||||+.+.
T Consensus 90 ---------~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 90 ---------IEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGA 142 (693)
T ss_pred ---------HHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 2356778889999999999765 344578999999999998753
No 482
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.51 E-value=1.9e-13 Score=139.98 Aligned_cols=117 Identities=22% Similarity=0.240 Sum_probs=85.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCCceee-----c----------CCCC----CceeeeeEEEEEEECCeeEEEEeCCCCc
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALV-----Y----------NTPD----DHVTRDIREGLAKLGDLRFKVLDSAGLE 214 (640)
Q Consensus 154 ~~V~lvG~~nvGKSSLin~L~~~~~~~v-----~----------~~~~----~~tT~~~~~~~~~~~~~~~~liDTpG~~ 214 (640)
..|+|+|++|+|||||+++|+....++. . +... ...|.......+.+++.++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 4799999999999999999985322211 1 0000 0122334445777889999999999987
Q ss_pred cccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcC
Q 006555 215 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 282 (640)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~ 282 (640)
++...+..+++.+|++++|+|++.+.......+.+.+... ++|+++++||+|+...
T Consensus 83 ----------df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~--~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 ----------DFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLR--GIPIITFINKLDREGR 138 (267)
T ss_pred ----------HHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhc--CCCEEEEEECCccCCC
Confidence 4555667788999999999999988766555566655544 7899999999998664
No 483
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.51 E-value=8.9e-14 Score=151.15 Aligned_cols=153 Identities=22% Similarity=0.232 Sum_probs=96.5
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCC--ceeecCcccceeeeEEEEEEE------------------C--------CeEE
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQED--RVLVGPEAGLTRDSVRVHFEY------------------Q--------GRTV 407 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~--~~~~~~~~gtT~d~~~~~~~~------------------~--------~~~~ 407 (640)
..++|+++|+.++|||||+.+|.+.. ........|.|.+.......+ + ...+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 35899999999999999999997631 111122346666543211111 0 2578
Q ss_pred EEEEeCCCCcccccCCchhhHHHHHHHHHhhccEEEEEecccHH-----------HHHHcC-CcEEEEEeCCCCCCCccc
Q 006555 408 YLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------RAVEEG-RGLVVIVNKMDLLSGRQN 475 (640)
Q Consensus 408 ~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~advvllVvDa~~~-----------~~~~~~-~p~Ilv~NK~Dl~~~~~~ 475 (640)
.||||||+.++ . ..+......+|++++|+|++++ .....+ .|+++|+||+|+.+....
T Consensus 88 ~liDtPG~~~f---------~-~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~ 157 (411)
T PRK04000 88 SFVDAPGHETL---------M-ATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERA 157 (411)
T ss_pred EEEECCCHHHH---------H-HHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhH
Confidence 99999996432 1 2334455678999999999852 111234 469999999999764322
Q ss_pred hHHHHHHHHHcHHHHHhhCCCCCCCcEEEeccccCCCHHHHHHHHHHHH
Q 006555 476 SALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 524 (640)
Q Consensus 476 ~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g~gv~~l~~~i~~~~ 524 (640)
...++.+. ..+... ...+.+++++||++|.|++++++.|...+
T Consensus 158 ~~~~~~i~----~~l~~~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 158 LENYEQIK----EFVKGT--VAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHH----HHhccc--cCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 11122221 111110 12357899999999999999998887643
No 484
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.51 E-value=9e-14 Score=123.51 Aligned_cols=147 Identities=20% Similarity=0.156 Sum_probs=105.7
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHHh
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 437 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 437 (640)
+.+.++|-.|+||||++|.+...+ .....+-|+......++.+...+.+||.||+.++. ..+.++.+
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~---~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfr----------smWerycR 87 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQ---YLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR----------SMWERYCR 87 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeecc---chhhhcccccceeEEeccCceEEEEEecCCCccHH----------HHHHHHhh
Confidence 679999999999999999876433 22333445555555666677899999999987663 45678899
Q ss_pred hccEEEEEecccHH--------H-------HHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcE
Q 006555 438 RAHVVALVLDAEEV--------R-------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 502 (640)
Q Consensus 438 ~advvllVvDa~~~--------~-------~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 502 (640)
.++++++|+|+.++ + ..-.++|++|++||.|+.+.-....+.+. +.-.--....+.+
T Consensus 88 ~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~r--------mgL~sitdREvcC 159 (186)
T KOG0075|consen 88 GVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIER--------MGLSSITDREVCC 159 (186)
T ss_pred cCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHH--------hCccccccceEEE
Confidence 99999999999986 1 11248999999999999876432222221 1111111224578
Q ss_pred EEeccccCCCHHHHHHHHHHHHH
Q 006555 503 VFTSALEGRGRIAVMHQVIDTYQ 525 (640)
Q Consensus 503 v~iSAk~g~gv~~l~~~i~~~~~ 525 (640)
+.||+++..|++.+.+++.+.-.
T Consensus 160 ~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 160 FSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred EEEEEcCCccHHHHHHHHHHHhh
Confidence 99999999999999998887543
No 485
>PTZ00258 GTP-binding protein; Provisional
Probab=99.51 E-value=2.9e-13 Score=143.94 Aligned_cols=89 Identities=25% Similarity=0.270 Sum_probs=72.3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECC-----------------eeEEEEeCCCCcc
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD-----------------LRFKVLDSAGLET 215 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~-----------------~~~~liDTpG~~~ 215 (640)
..+|+|||.||||||||||+|++.+ ..+++.|+ +|++...+.+.+.+ .++.++||||+..
T Consensus 21 ~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pf--tTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 21 NLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPF--CTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CcEEEEECCCCCChHHHHHHHhcCc-ccccCCCC--CcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 4589999999999999999998876 57788887 99999999888763 3499999999986
Q ss_pred ccCccchHHHHHHHHHHHHhccceEEEEeecC
Q 006555 216 EATSGSILDRTAGMTANVLAKTQFAIFMIDVR 247 (640)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s 247 (640)
....+.. .....+..++++|++++|+|+.
T Consensus 98 ga~~g~g---Lg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEG---LGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhH---HHHHHHHHHHHCCEEEEEEeCC
Confidence 5543322 2245677899999999999984
No 486
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.50 E-value=2.4e-13 Score=139.93 Aligned_cols=104 Identities=28% Similarity=0.406 Sum_probs=76.1
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCcee-----ec------C------cccceeeeEEEEEEECCeEEEEEEeCCCCccccc
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVL-----VG------P------EAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE 421 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~-----~~------~------~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~ 421 (640)
+|+++|++|+|||||+|+|++....+ +. + ..+.|.......+.+++..+.+|||||+.++.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~-- 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFV-- 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHH--
Confidence 48999999999999999998542211 10 0 11344445556777889999999999964321
Q ss_pred CCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCC
Q 006555 422 KGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 472 (640)
Q Consensus 422 ~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~ 472 (640)
..+..++..+|++++|+|++++ .....++|.++++||+|+...
T Consensus 79 --------~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 79 --------GETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA 131 (268)
T ss_pred --------HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC
Confidence 2455678899999999999875 223468999999999998754
No 487
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.50 E-value=1.1e-13 Score=145.45 Aligned_cols=174 Identities=21% Similarity=0.287 Sum_probs=122.2
Q ss_pred ceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccC-CchhhHHHHHHHHH
Q 006555 358 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEK-GPASLSVMQSRKNL 436 (640)
Q Consensus 358 ~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~-~~~~~~~~~~~~~i 436 (640)
-.++++|.|||||||++|.++..+ ..+.++++||.....+.+.+.-..++++||||+.+...+. ...++....++.++
T Consensus 169 rTlllcG~PNVGKSSf~~~vtrad-vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHL 247 (620)
T KOG1490|consen 169 RTLLVCGYPNVGKSSFNNKVTRAD-DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHL 247 (620)
T ss_pred CeEEEecCCCCCcHhhcccccccc-cccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHh
Confidence 478999999999999999888553 6788999999999999999999999999999998774322 12222222334444
Q ss_pred hhccEEEEEecccHH---------------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCc
Q 006555 437 MRAHVVALVLDAEEV---------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 501 (640)
Q Consensus 437 ~~advvllVvDa~~~---------------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 501 (640)
+ -+||++.|.++. ..+-.++|+|+|+||+|+....+..+.-+++.+.+ ....+++
T Consensus 248 r--aaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~--------~~~~~v~ 317 (620)
T KOG1490|consen 248 R--SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTI--------IDDGNVK 317 (620)
T ss_pred h--hhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHH--------HhccCce
Confidence 3 468888999874 22346899999999999987655443333332222 2233589
Q ss_pred EEEeccccCCCHHHHHHHHHHHHH--HHhcCCChHHHH-HHHHH
Q 006555 502 VVFTSALEGRGRIAVMHQVIDTYQ--KWCLRLPTSRLN-RWLRK 542 (640)
Q Consensus 502 ~v~iSAk~g~gv~~l~~~i~~~~~--~~~~~i~t~~l~-~~l~~ 542 (640)
++.+|..+.+|+.++-....+.+. +...++.....+ +.+..
T Consensus 318 v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~Klks~~~~n~vlnr 361 (620)
T KOG1490|consen 318 VVQTSCVQEEGVMDVRTTACEALLAARVEQKLKSESRVNNVLNR 361 (620)
T ss_pred EEEecccchhceeeHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Confidence 999999999999998877665542 223344443433 44433
No 488
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.50 E-value=2.2e-13 Score=149.22 Aligned_cols=150 Identities=23% Similarity=0.264 Sum_probs=102.1
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCce------------------------------eecCcccceeeeEEEEEEECCe
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRV------------------------------LVGPEAGLTRDSVRVHFEYQGR 405 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~------------------------------~~~~~~gtT~d~~~~~~~~~~~ 405 (640)
+.+.|+++|+.++|||||+.+|+..... ......|+|.+.....+++++.
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 3578999999999999999999742110 1112337888887777888899
Q ss_pred EEEEEEeCCCCcccccCCchhhHHHHHHHHHhhccEEEEEecccHH-----------------HHHHcCCc-EEEEEeCC
Q 006555 406 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------------RAVEEGRG-LVVIVNKM 467 (640)
Q Consensus 406 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~advvllVvDa~~~-----------------~~~~~~~p-~Ilv~NK~ 467 (640)
.+.|+||||+.++. ..+..++..+|++|+|+|++++ .....++| +|+++||+
T Consensus 86 ~i~liDtPGh~df~----------~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKm 155 (447)
T PLN00043 86 YCTVIDAPGHRDFI----------KNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKM 155 (447)
T ss_pred EEEEEECCCHHHHH----------HHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcc
Confidence 99999999975441 2344567789999999999863 11135775 78899999
Q ss_pred CCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEeccccCCCHHH
Q 006555 468 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIA 515 (640)
Q Consensus 468 Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g~gv~~ 515 (640)
|+.........++.+.+++...+.+.-.....++++++||++|.|+.+
T Consensus 156 D~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 156 DATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 986322122334444444443333221112347899999999999864
No 489
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.49 E-value=3.8e-13 Score=149.80 Aligned_cols=117 Identities=21% Similarity=0.210 Sum_probs=86.3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCc-----eeec----------CCCC----CceeeeeEEEEEEECCeeEEEEeCCCC
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRRE-----ALVY----------NTPD----DHVTRDIREGLAKLGDLRFKVLDSAGL 213 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~-----~~v~----------~~~~----~~tT~~~~~~~~~~~~~~~~liDTpG~ 213 (640)
...|+|+|++|+|||||.++|+.... ..+. +... .+.|.......+.+++.++.+|||||+
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 56899999999999999999973211 1111 0000 012333444567788999999999999
Q ss_pred ccccCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCc
Q 006555 214 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLH 281 (640)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~ 281 (640)
. ++...+..++..+|++++|+|++++.......+++..+.. ++|+++++||+|+..
T Consensus 90 ~----------df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~--~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 90 E----------DFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLR--DTPIFTFINKLDRDG 145 (526)
T ss_pred h----------hhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhc--CCCEEEEEECCcccc
Confidence 7 4556677788999999999999998876666666666554 889999999999764
No 490
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.49 E-value=9.6e-13 Score=122.53 Aligned_cols=157 Identities=20% Similarity=0.222 Sum_probs=122.4
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCCceee----cCCCCCc---eeeeeEEEEEEECC-eeEEEEeCCCCccccCccchHH
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALV----YNTPDDH---VTRDIREGLAKLGD-LRFKVLDSAGLETEATSGSILD 224 (640)
Q Consensus 153 ~~~V~lvG~~nvGKSSLin~L~~~~~~~v----~~~~~~~---tT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~ 224 (640)
..+|+++|.-++||||++.+++.....++ +...+.. +|.-.-++.+.+.+ ..+.|+||||+.
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~---------- 79 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQE---------- 79 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcH----------
Confidence 45999999999999999999998753222 1222222 67777777777766 899999999999
Q ss_pred HHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcC--CCCc
Q 006555 225 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLG--FGDP 302 (640)
Q Consensus 225 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g--~~~~ 302 (640)
|+..++..+.+.++.+++++|.+.+.+....++.+++....+ .|++++.||.|+......+ ...++.... --++
T Consensus 80 RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~-ip~vVa~NK~DL~~a~ppe---~i~e~l~~~~~~~~v 155 (187)
T COG2229 80 RFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP-IPVVVAINKQDLFDALPPE---KIREALKLELLSVPV 155 (187)
T ss_pred HHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC-CCEEEEeeccccCCCCCHH---HHHHHHHhccCCCce
Confidence 787888889999999999999999988877788888887632 8999999999998865422 222333332 2378
Q ss_pred EEeeccCCCChhHHHHHhccc
Q 006555 303 IAISAETGLGMTELYEALRPS 323 (640)
Q Consensus 303 i~iSA~~g~gi~eL~~~I~~~ 323 (640)
++++|..++|..+.++.+...
T Consensus 156 i~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 156 IEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeeecccchhHHHHHHHHHhh
Confidence 999999999999988877654
No 491
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.49 E-value=5.2e-14 Score=125.96 Aligned_cols=112 Identities=21% Similarity=0.252 Sum_probs=73.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCCce---eecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 155 TVMIIGRPNVGKSALFNRLIRRREA---LVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 155 ~V~lvG~~nvGKSSLin~L~~~~~~---~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
+|+|+|.+|||||||+++|++.... ......+ .+..............+.+||++|.... .....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------~~~~~ 68 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSE--ITIGVDVIVVDGDRQSLQFWDFGGQEEF----------YSQHQ 68 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTT--SCEEEEEEEETTEEEEEEEEEESSSHCH----------HCTSH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCC--CcEEEEEEEecCCceEEEEEecCcccee----------ccccc
Confidence 6999999999999999999987654 1111222 2222222222223345899999999722 22222
Q ss_pred HHHhccceEEEEeecCCCCChhh-HHHHHHHHHh---CCCCcEEEEecCCC
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKH---APQIKPIVAMNKCE 278 (640)
Q Consensus 232 ~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~L~~~---~~~~p~ilV~NK~D 278 (640)
..+..+|++++|+|.+++.+.+. .++.+|+... .++.|+++|+||.|
T Consensus 69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 33889999999999998766665 3355555543 45799999999998
No 492
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.49 E-value=4.3e-13 Score=137.45 Aligned_cols=127 Identities=17% Similarity=0.201 Sum_probs=88.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCceeecCCCCCceeeeeEEEEEEECCeeEEEEeCCCCccccCccchHHHHHHHHH
Q 006555 152 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 152 ~~~~V~lvG~~nvGKSSLin~L~~~~~~~v~~~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
..++|+++|.+||||||++|+|++++.+.++...+ .|...........|.++.+|||||+.+... ...+......
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s--~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~---~~e~~~~~ik 111 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQS--EGLRPMMVSRTRAGFTLNIIDTPGLIEGGY---INDQAVNIIK 111 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCC--cceeEEEEEEEECCeEEEEEECCCCCchHH---HHHHHHHHHH
Confidence 35699999999999999999999998877766554 333333344456889999999999985421 1111222222
Q ss_pred HHH--hccceEEEEeecCC-CCChhhHHHHHHHHHhCC---CCcEEEEecCCCCCcCC
Q 006555 232 NVL--AKTQFAIFMIDVRS-GLHPLDLEVGKWLRKHAP---QIKPIVAMNKCESLHNG 283 (640)
Q Consensus 232 ~~~--~~ad~vl~VvD~s~-~~~~~~~~~~~~L~~~~~---~~p~ilV~NK~Dl~~~~ 283 (640)
.++ ...|++|||...+. ..+..|..+++.++..+. ..++|+|+|++|...++
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd 169 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPD 169 (313)
T ss_pred HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCC
Confidence 222 26889999965542 467677788888877542 36899999999987543
No 493
>KOG2484 consensus GTPase [General function prediction only]
Probab=99.48 E-value=1.8e-13 Score=140.76 Aligned_cols=174 Identities=21% Similarity=0.256 Sum_probs=117.8
Q ss_pred HHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEE
Q 006555 225 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 304 (640)
Q Consensus 225 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~ 304 (640)
.+.......++.+|+||.|+|+++|+.....++-+++.....++..|+|+||+|+.+.+. .+.....+...+. .+.+
T Consensus 135 aY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv--~e~Wl~YLr~~~p-tv~f 211 (435)
T KOG2484|consen 135 AYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREV--VEKWLVYLRREGP-TVAF 211 (435)
T ss_pred HHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHH--HHHHHHHHHhhCC-ccee
Confidence 455666777889999999999999998888888888876666799999999999998533 3344455555554 4544
Q ss_pred eeccCCCChh--HHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEeCCCCchHHHHHHHhcCCc
Q 006555 305 ISAETGLGMT--ELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDR 382 (640)
Q Consensus 305 iSA~~g~gi~--eL~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKStL~n~l~~~~~ 382 (640)
.++....+.. .+....+ .-.+.....+.+.+. ...-+..++|+|+|-|||||||++|+|.....
T Consensus 212 kast~~~~~~~~~~~~s~c-~gae~l~~~lgny~~-------------~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~ 277 (435)
T KOG2484|consen 212 KASTQMQNSNSKNLQSSVC-FGAETLMKVLGNYCR-------------KGELKTSIRVGIIGYPNVGKSSVINSLKRRKA 277 (435)
T ss_pred ecccccccccccccccchh-hhHHHHHHHhcCccc-------------ccccCcceEeeeecCCCCChhHHHHHHHHhcc
Confidence 4444333321 0000000 000111111111111 01123468999999999999999999998888
Q ss_pred eeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcc
Q 006555 383 VLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 418 (640)
Q Consensus 383 ~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~ 418 (640)
..+++.||.|+...... -+..+.|+|.||+.-.
T Consensus 278 C~vg~~pGvT~smqeV~---Ldk~i~llDsPgiv~~ 310 (435)
T KOG2484|consen 278 CNVGNVPGVTRSMQEVK---LDKKIRLLDSPGIVPP 310 (435)
T ss_pred ccCCCCccchhhhhhee---ccCCceeccCCceeec
Confidence 89999999999865543 4578899999998654
No 494
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.48 E-value=5.5e-13 Score=130.76 Aligned_cols=163 Identities=15% Similarity=0.200 Sum_probs=97.7
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCcee-ecCccc---ceeeeEEEEEEE-CCeEEEEEEeCCCCcccccCCchhhHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVL-VGPEAG---LTRDSVRVHFEY-QGRTVYLVDTAGWLQREKEKGPASLSVMQ 431 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~-~~~~~g---tT~d~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 431 (640)
+++|+++|++|+|||||+|+|+|..... .....+ +|+... .+.. +...+.+|||||+.+... ..+.+ ..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~--~~~~~--l~ 74 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPKFPNVTLWDLPGIGSTAF--PPDDY--LE 74 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCCCCCceEEeCCCCCcccC--CHHHH--HH
Confidence 4789999999999999999999854221 111112 232221 1111 234789999999865421 11122 11
Q ss_pred HHHHHhhccEEEEEecccH--H------HHHHcCCcEEEEEeCCCCCCCcc---------chHHHHHHHHHcHHHHHhhC
Q 006555 432 SRKNLMRAHVVALVLDAEE--V------RAVEEGRGLVVIVNKMDLLSGRQ---------NSALYKRVKEAVPQEIQTVI 494 (640)
Q Consensus 432 ~~~~i~~advvllVvDa~~--~------~~~~~~~p~Ilv~NK~Dl~~~~~---------~~~~~~~~~~~v~~~~~~~~ 494 (640)
...+..+|++++|.|..- . .....++|+++|+||+|+..... ..+..+.+++.+...+...
T Consensus 75 -~~~~~~~d~~l~v~~~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~- 152 (197)
T cd04104 75 -EMKFSEYDFFIIISSTRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA- 152 (197)
T ss_pred -HhCccCcCEEEEEeCCCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc-
Confidence 122457899999866531 1 22335789999999999964211 1233444444443333211
Q ss_pred CCCCCCcEEEeccc--cCCCHHHHHHHHHHHHHHHh
Q 006555 495 PQVTGIPVVFTSAL--EGRGRIAVMHQVIDTYQKWC 528 (640)
Q Consensus 495 ~~~~~~~~v~iSAk--~g~gv~~l~~~i~~~~~~~~ 528 (640)
.....+++.+|+. .+.++..+.+.+...+.+..
T Consensus 153 -~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 153 -GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred -CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 1234578999998 67899988888887665433
No 495
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.48 E-value=4.3e-13 Score=122.26 Aligned_cols=133 Identities=25% Similarity=0.255 Sum_probs=84.7
Q ss_pred eEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECCeEEEEEEeCCCCcccccCCchhhHHHHHHHHHhh
Q 006555 359 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 438 (640)
Q Consensus 359 kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 438 (640)
||.++|+.++|||||+++|.+.+. ...-|.. +.+.+ .+|||||=+-.. ...+. .......+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-----~~~KTq~-----i~~~~---~~IDTPGEyiE~----~~~y~--aLi~ta~d 63 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-----RYKKTQA-----IEYYD---NTIDTPGEYIEN----PRFYH--ALIVTAQD 63 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-----CcCccce-----eEecc---cEEECChhheeC----HHHHH--HHHHHHhh
Confidence 799999999999999999998642 1111211 22222 359999932111 11111 12233347
Q ss_pred ccEEEEEecccHH-------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHHHcHHHHHhhCCCCCCCcEEEeccccCC
Q 006555 439 AHVVALVLDAEEV-------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGR 511 (640)
Q Consensus 439 advvllVvDa~~~-------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~iSAk~g~ 511 (640)
||++++|.|+++. ...--++|+|=|++|+|+..+.. ..+...+.+ .....-.++++||.+|+
T Consensus 64 ad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~~~~~---~i~~a~~~L--------~~aG~~~if~vS~~~~e 132 (143)
T PF10662_consen 64 ADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLPSDDA---NIERAKKWL--------KNAGVKEIFEVSAVTGE 132 (143)
T ss_pred CCEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCccchh---hHHHHHHHH--------HHcCCCCeEEEECCCCc
Confidence 9999999999986 22224789999999999984321 111111111 11222357999999999
Q ss_pred CHHHHHHHHH
Q 006555 512 GRIAVMHQVI 521 (640)
Q Consensus 512 gv~~l~~~i~ 521 (640)
|+++|.+.|.
T Consensus 133 Gi~eL~~~L~ 142 (143)
T PF10662_consen 133 GIEELKDYLE 142 (143)
T ss_pred CHHHHHHHHh
Confidence 9999988764
No 496
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=4e-13 Score=144.14 Aligned_cols=154 Identities=21% Similarity=0.315 Sum_probs=112.1
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEEC---CeEEEEEEeCCCCcccccCCchhhHHHHHH
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ---GRTVYLVDTAGWLQREKEKGPASLSVMQSR 433 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 433 (640)
+.-|+++|+...|||||+..+.+.+ .....--|.|.+....++..+ ...+.++||||+ +.|..++++
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~-Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH---------eAFt~mRaR 74 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTN-VAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH---------EAFTAMRAR 74 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCc-cccccCCceeeEeeeEEEEeccCCCceEEEEcCCcH---------HHHHHHHhc
Confidence 4569999999999999999998654 445566689999888888874 468999999995 345556665
Q ss_pred HHHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCCccchHHHHHHHH-HcHHHHHhhCCCCCCCcE
Q 006555 434 KNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKE-AVPQEIQTVIPQVTGIPV 502 (640)
Q Consensus 434 ~~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~ 502 (640)
.+ .-+|+++||+|+.++ .....+.|+||++||+|..+... ......+.+ .+.. +.|. ....+
T Consensus 75 Ga-~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np-~~v~~el~~~gl~~---E~~g--g~v~~ 147 (509)
T COG0532 75 GA-SVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANP-DKVKQELQEYGLVP---EEWG--GDVIF 147 (509)
T ss_pred CC-ccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCH-HHHHHHHHHcCCCH---hhcC--CceEE
Confidence 33 358999999999997 23347999999999999986532 222222211 1111 1111 23689
Q ss_pred EEeccccCCCHHHHHHHHHHHHHHH
Q 006555 503 VFTSALEGRGRIAVMHQVIDTYQKW 527 (640)
Q Consensus 503 v~iSAk~g~gv~~l~~~i~~~~~~~ 527 (640)
+++||++|+|+++|++.+.-..+..
T Consensus 148 VpvSA~tg~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 148 VPVSAKTGEGIDELLELILLLAEVL 172 (509)
T ss_pred EEeeccCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999887665544
No 497
>PTZ00258 GTP-binding protein; Provisional
Probab=99.47 E-value=3.7e-13 Score=143.15 Aligned_cols=90 Identities=27% Similarity=0.243 Sum_probs=72.6
Q ss_pred CCceEEEEeCCCCchHHHHHHHhcCCceeecCcccceeeeEEEEEEECC-----------------eEEEEEEeCCCCcc
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG-----------------RTVYLVDTAGWLQR 418 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~gtT~d~~~~~~~~~~-----------------~~~~liDTpG~~~~ 418 (640)
..++|+|||.||||||||+|+|++.. ..++++|+||+++..+.+.+.+ .++.++||||+...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 35799999999999999999998765 7899999999999988887653 35899999999855
Q ss_pred cccCCchhhHHHHHHHHHhhccEEEEEeccc
Q 006555 419 EKEKGPASLSVMQSRKNLMRAHVVALVLDAE 449 (640)
Q Consensus 419 ~~~~~~~~~~~~~~~~~i~~advvllVvDa~ 449 (640)
... .+.+ ..+.+..++++|++++|+|+.
T Consensus 99 a~~--g~gL-g~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASE--GEGL-GNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred Ccc--hhHH-HHHHHHHHHHCCEEEEEEeCC
Confidence 221 1122 246778899999999999973
No 498
>PRK13351 elongation factor G; Reviewed
Probab=99.47 E-value=4.4e-13 Score=155.41 Aligned_cols=119 Identities=17% Similarity=0.245 Sum_probs=91.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCCcee-----e------cCCC----CCceeeeeEEEEEEECCeeEEEEeCCCCccc
Q 006555 152 LLPTVMIIGRPNVGKSALFNRLIRRREAL-----V------YNTP----DDHVTRDIREGLAKLGDLRFKVLDSAGLETE 216 (640)
Q Consensus 152 ~~~~V~lvG~~nvGKSSLin~L~~~~~~~-----v------~~~~----~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~ 216 (640)
...+|+|+|..|+|||||+++|+.....+ + .+.. ....|.......+.+.+.++.+|||||+.
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~-- 84 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI-- 84 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH--
Confidence 35689999999999999999998532110 1 0000 01145555566778889999999999997
Q ss_pred cCccchHHHHHHHHHHHHhccceEEEEeecCCCCChhhHHHHHHHHHhCCCCcEEEEecCCCCCcC
Q 006555 217 ATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 282 (640)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~~~~~~p~ilV~NK~Dl~~~ 282 (640)
++...+..+++.+|++++|+|++++.......+++.+... ++|+++|+||+|+...
T Consensus 85 --------df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~--~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 --------DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY--GIPRLIFINKMDRVGA 140 (687)
T ss_pred --------HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc--CCCEEEEEECCCCCCC
Confidence 5556778889999999999999998887777777766665 7899999999998754
No 499
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.47 E-value=7e-13 Score=147.69 Aligned_cols=106 Identities=23% Similarity=0.331 Sum_probs=78.6
Q ss_pred CceEEEEeCCCCchHHHHHHHhcCCcee---------------ecC------cccceeeeEEEEEEECCeEEEEEEeCCC
Q 006555 357 PLQLAIVGRPNVGKSTLLNALLQEDRVL---------------VGP------EAGLTRDSVRVHFEYQGRTVYLVDTAGW 415 (640)
Q Consensus 357 ~~kv~ivG~~nvGKStL~n~l~~~~~~~---------------~~~------~~gtT~d~~~~~~~~~~~~~~liDTpG~ 415 (640)
..+|+|+|++|+|||||+++|+.....+ +++ ..|.|.......+.+++..+.+|||||+
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 4589999999999999999997421110 011 1145555556678889999999999997
Q ss_pred CcccccCCchhhHHHHHHHHHhhccEEEEEecccHH----------HHHHcCCcEEEEEeCCCCCCC
Q 006555 416 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 472 (640)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~i~~advvllVvDa~~~----------~~~~~~~p~Ilv~NK~Dl~~~ 472 (640)
.++. ..+..+++.+|++|+|+|++++ .....++|+++++||+|+...
T Consensus 90 ~df~----------~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 90 EDFS----------EDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred hhhH----------HHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccccc
Confidence 5442 2345678899999999999875 223468999999999998754
No 500
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.47 E-value=6.6e-13 Score=134.55 Aligned_cols=148 Identities=26% Similarity=0.351 Sum_probs=100.7
Q ss_pred HHhccceEEEEeecCCCCChhhHHHHHHHHH-hCCCCcEEEEecCCCCCcCCccchHHHHHHHHhcCCCCcEEeeccCCC
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRK-HAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGL 311 (640)
Q Consensus 233 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~L~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~iSA~~g~ 311 (640)
.+.+.|-+++|+.+.+|..... .+-++|-. ...++..++|+||+|+..+......+....+..+|+ +++.+|++++.
T Consensus 76 ~v~n~d~~iiIvs~~~P~~~~~-~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy-~v~~~s~~~~~ 153 (301)
T COG1162 76 PVANNDQAIIVVSLVDPDFNTN-LLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGY-PVLFVSAKNGD 153 (301)
T ss_pred cccccceEEEEEeccCCCCCHH-HHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCe-eEEEecCcCcc
Confidence 3455777777777766533321 23344432 234788899999999998654332234455666898 89999999999
Q ss_pred ChhHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEeCCCCchHHHHHHHhcCCceeecCcc--
Q 006555 312 GMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA-- 389 (640)
Q Consensus 312 gi~eL~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKStL~n~l~~~~~~~~~~~~-- 389 (640)
|+++|.+.+... ..+++|.+|||||||+|+|.++....+++..
T Consensus 154 ~~~~l~~~l~~~-----------------------------------~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~ 198 (301)
T COG1162 154 GLEELAELLAGK-----------------------------------ITVLLGQSGVGKSTLINALLPELNQKTGEISEK 198 (301)
T ss_pred cHHHHHHHhcCC-----------------------------------eEEEECCCCCcHHHHHHhhCchhhhhhhhhccc
Confidence 999988876542 4689999999999999999986554444333
Q ss_pred -----cceeeeEEEEEEECCeEEEEEEeCCCCcccc
Q 006555 390 -----GLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 420 (640)
Q Consensus 390 -----gtT~d~~~~~~~~~~~~~~liDTpG~~~~~~ 420 (640)
.||+......+.-+| .|+||||+.....
T Consensus 199 ~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~l 231 (301)
T COG1162 199 LGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLGL 231 (301)
T ss_pred CCCCCCccceEEEEEcCCCC---EEEeCCCCCccCc
Confidence 355554433332233 6899999987743
Done!