Query 006555
Match_columns 640
No_of_seqs 497 out of 5582
Neff 7.8
Searched_HMMs 29240
Date Tue Mar 26 18:43:02 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/006555.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2182-2186//hhsearch_pdb/006555hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjg_A GTP-binding protein ENG 1.0 1 1 585.2 34.8 421 153-611 3-435 (436)
2 4dcu_A GTP-binding protein ENG 1.0 1 1 567.9 36.1 422 152-611 22-455 (456)
3 1mky_A Probable GTP-binding pr 1.0 1 1 556.6 45.4 424 153-611 1-438 (439)
4 3ec1_A YQEH GTPase; atnos1, at 1.0 1 1 189.2 9.6 212 225-478 60-295 (369)
5 4djt_A GTP-binding nuclear pro 1.0 1 1 189.0 5.5 190 356-570 10-217 (218)
6 1mky_A Probable GTP-binding pr 1.0 1 1 188.0 22.1 249 152-505 179-434 (439)
7 3iev_A GTP-binding protein ERA 1.0 1 1 187.6 18.9 170 153-326 10-182 (308)
8 2qtf_A Protein HFLX, GTP-bindi 1.0 1 1 185.8 10.1 259 58-326 74-354 (364)
9 1wf3_A GTP-binding protein; GT 1.0 1 1 185.7 15.8 166 154-326 8-173 (301)
10 2hjg_A GTP-binding protein ENG 1.0 1 1 185.5 15.2 172 151-326 173-349 (436)
No 1
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=585.24 Aligned_cols=421 Identities=32% Similarity=0.525 Sum_probs=360.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCCEEEEEEEEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99899990799978899999975986033178998301330799989779019998478975544742068899999999
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 153 ~~~V~IvG~~nvGKSSLiN~L~~~~~a~v~~~~g~~tT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
.++|+|+|+||||||||+|+|++.+.+++.+.+| +|++..+....+.+..+.+|||||++.... .+..++..++..
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g--~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~--~~~~~~~~~~~~ 78 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPG--VTRDRIYSSAEWLNYDFNLIDTGGIDIGDE--PFLAQIRQQAEI 78 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-------------CEEEECTTCSSCCEEEC-----------CHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCC--CCCCEEEEEEEECCCEEEEEECCCCCCCCH--HHHHHHHHHHHH
T ss_conf 8899999999998999999996898504269899--846548999999990599998979987665--599999999999
Q ss_pred HHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCC
Q ss_conf 97404669999504799995209999999972999858999617887768965147899999862999829961467878
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLG 312 (640)
Q Consensus 233 ~~~~ad~il~VvD~~~~~~~~~~~~~~~L~~~~~~~p~IlV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~vSA~~g~g 312 (640)
++.++|++++|+|++++.+..+.++.++++.. ++|+++|+||+|+...... ..+++.+++++++++||++|.|
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~--~~pvilv~NK~D~~~~~~~-----~~~~~~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYRT--KKPVVLAVNKLDNTEMRAN-----IYDFYSLGFGEPYPISGTHGLG 151 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTTC--CSCEEEEEECCCC-----C-----CCSSGGGSSCCCEECBTTTTBT
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC--CCCEEEEEECCCCCCCHHH-----HHHHHHCCCCCEEEEECCCCCC
T ss_conf 99748899999847889997999999999973--9987999989668643566-----7889871899769996768989
Q ss_pred HHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCE
Q ss_conf 45789975002277776530343445899988999998644568834999908998467999998508912216865403
Q 006555 313 MTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLT 392 (640)
Q Consensus 313 i~eL~~~I~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKSsLin~l~~~~~~~~~~~~gtT 392 (640)
+++|++.+.+.+++. . +..+....++|+++|+||||||||+|+|++.++..+++.+|||
T Consensus 152 v~~L~~~i~~~l~~~-------------------~--~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT 210 (436)
T 2hjg_A 152 LGDLLDAVAEHFKNI-------------------P--ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTT 210 (436)
T ss_dssp HHHHHHHHHHTGGGC-------------------C--SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC------
T ss_pred HHHHHHHHHHHCCCC-------------------C--CCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCE
T ss_conf 599999998756732-------------------1--1111246727999757998877999997287742314899961
Q ss_pred EEEEEEEEEECCEEEEEEEECCCCCC-CCCCCCHHHHHHHHHHHHHHCCEEEEEECCCHH----------HHHHCCCCEE
Q ss_conf 65599999998959999970798852-236772014799999997514589999116378----------8987399499
Q 006555 393 RDSVRVHFEYQGRTVYLVDTAGWLQR-EKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLV 461 (640)
Q Consensus 393 ~d~~~~~~~~~g~~~~liDTpG~~~~-~~~~~~e~~~~~~~~~~i~~advvllViDas~~----------~~~~~~~p~I 461 (640)
+|.+...+.+++..+.||||||+++. ...+..|.+...++..+++.+|++++|+|++++ ...+.++|+|
T Consensus 211 ~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~ii 290 (436)
T 2hjg_A 211 RDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVV 290 (436)
T ss_dssp ---CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 61368999989918999979884707554421789999999998875999999982876776899999999998399679
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHCHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99828978898562589999998708999853888999968990165599989999999999999814999479999999
Q 006555 462 VIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLR 541 (640)
Q Consensus 462 iv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gi~~l~~~i~~~~~~~~~~i~t~~ln~~l~ 541 (640)
+|+||||+.+.+... + +.+..++.+.+....+++++++||++|.|++++|+.+.+.+.++..+++|+.+|+|+.
T Consensus 291 iv~NK~Dl~~~~~~~--~----~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~~~~t~~ln~~l~ 364 (436)
T 2hjg_A 291 IVVNKWDAVDKDEST--M----KEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIM 364 (436)
T ss_dssp EEEECGGGSCCCTTH--H----HHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred EEEECCCCCCCCHHH--H----HHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 999891278863678--9----9999999986035799978998155688999999999999998604788799999999
Q ss_pred HHHHCCCCC-CCCCCCCEEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 998609999-9998770766440599999899993689988988999989986723799950179999606
Q 006555 542 KVMGRHSWK-DQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSV 611 (640)
Q Consensus 542 ~~~~~~~~~-~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~r~~~~~~g~pi~l~~~~~ 611 (640)
+++..+|+| ..++++|++|++|+..+||+|++|+|.++.++++|+|||+|+||+.|+|.|+||+|.||.+
T Consensus 365 ~~~~~~~pp~~~~~~~~i~y~~q~~~~pp~~~~~~n~~~~~~~~y~r~l~~~~r~~~~~~g~p~~~~~~~~ 435 (436)
T 2hjg_A 365 DAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFARAR 435 (436)
T ss_dssp HHHHHSCCCEETTEECCEEEEEEEETTTTEEEEEESCGGGCCHHHHHHHHHHHHHHHCCTTSCCEEEEEEC
T ss_pred HHHHHCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 99985799866896114896766899999899996885559878999999999987699742389999648
No 2
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=1.00 E-value=1 Score=567.92 Aligned_cols=422 Identities=32% Similarity=0.518 Sum_probs=362.7
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCCEEEEEEEEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99989999079997889999997598603317899830133079998977901999847897554474206889999999
Q 006555 152 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 152 ~~~~V~IvG~~nvGKSSLiN~L~~~~~a~v~~~~g~~tT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
..++|+|+|++|||||||+|+|++.+.+.+.+.+| +|++.......+.+..+.+|||||+... ......++..++.
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g--~t~~~~~~~~~~~~~~~~liDT~G~~~~--~~~~~~~~~~~~~ 97 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPG--VTRDRIYSSAEWLNYDFNLIDTGGIDIG--DEPFLAQIRQQAE 97 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-------------CEEEECTTCSSCCEEECCCC--------CCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCC--CCEEEEEEEEEECCCEEEEEECCCCCCC--CHHHHHHHHHHHH
T ss_conf 99989999999983999999996778744489999--6565799999978936999978887776--1178999999998
Q ss_pred HHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 99740466999950479999520999999997299985899961788776896514789999986299982996146787
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGL 311 (640)
Q Consensus 232 ~~~~~ad~il~VvD~~~~~~~~~~~~~~~L~~~~~~~p~IlV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~vSA~~g~ 311 (640)
.++..+|++++|+|+.++.+..+.++.+++++. ++|+++|+||+|+.... ....+++.++++.++++||++|.
T Consensus 98 ~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~--~~pvilV~NK~D~~~~~-----~~~~e~~~lg~~~~~~iSA~~g~ 170 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREGVTAADEEVAKILYRT--KKPVVLAVNKLDNTEMR-----ANIYDFYSLGFGEPYPISGTHGL 170 (456)
T ss_dssp HHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTC--CSCEEEEEECC--------------CCSGGGSSSSEEECCTTTCT
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC--CCCEEEEEECCCCHHHH-----HHHHHHHHCCCCCEEEEECCCCC
T ss_conf 668659999999717889975789999999975--99889999792240246-----66799997599954886310254
Q ss_pred CHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 84578997500227777653034344589998899999864456883499990899846799999850891221686540
Q 006555 312 GMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGL 391 (640)
Q Consensus 312 gi~eL~~~I~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKSsLin~l~~~~~~~~~~~~gt 391 (640)
|+++|++.+.+.+++. . ........++|+++|.+|+|||||+|+|++.++..+++.+|+
T Consensus 171 gv~~L~~~i~~~l~~~------~---------------~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gt 229 (456)
T 4dcu_A 171 GLGDLLDAVAEHFKNI------P---------------ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGT 229 (456)
T ss_dssp THHHHHHHHHTTGGGS------C---------------SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC----
T ss_pred CHHHHHHHHHHHCCCC------C---------------CCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCE
T ss_conf 3478999987643432------1---------------233345551467732899987899999857785025799974
Q ss_pred EEEEEEEEEEECCEEEEEEEECCCCCC-CCCCCCHHHHHHHHHHHHHHCCEEEEEECCCHH----------HHHHCCCCE
Q ss_conf 365599999998959999970798852-236772014799999997514589999116378----------898739949
Q 006555 392 TRDSVRVHFEYQGRTVYLVDTAGWLQR-EKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGL 460 (640)
Q Consensus 392 T~d~~~~~~~~~g~~~~liDTpG~~~~-~~~~~~e~~~~~~~~~~i~~advvllViDas~~----------~~~~~~~p~ 460 (640)
|+|.+...+.+++..+.||||||+++. ......|.+...++..+++.+|++++|+|+++. ...+.++|+
T Consensus 230 t~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ 309 (456)
T 4dcu_A 230 TRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAV 309 (456)
T ss_dssp --CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEE
T ss_pred EEEEEEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 88779999998996399998999986766423788999999999885399999999588776799999999999839987
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHCHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99982897889856258999999870899985388899996899016559998999999999999981499947999999
Q 006555 461 VVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWL 540 (640)
Q Consensus 461 Iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gi~~l~~~i~~~~~~~~~~i~t~~ln~~l 540 (640)
|+|+||||+.+.+.. .++ .+...+...+....+++++++||++|.|++++|+.+.+.+.++..+++++.+|+++
T Consensus 310 ilv~NK~Dl~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~t~~ln~~l 383 (456)
T 4dcu_A 310 VIVVNKWDAVDKDES--TMK----EFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVI 383 (456)
T ss_dssp EEEEECGGGSCCCSS--HHH----HHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EEEEECHHCCCCCHH--HHH----HHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 999997444897468--999----99999998633589998899829899698999999999999844668979999999
Q ss_pred HHHHHCCCCC-CCCCCCCEEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 9998609999-9998770766440599999899993689988988999989986723799950179999606
Q 006555 541 RKVMGRHSWK-DQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSV 611 (640)
Q Consensus 541 ~~~~~~~~~~-~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~r~~~~~~g~pi~l~~~~~ 611 (640)
.+++..+++| ..++++|++|++|+..+||+|++|+|.++.++++|+|||+|+||+.|+|.|+||+|.||.+
T Consensus 384 ~~~~~~~~pp~~~~~~~ki~y~~q~~~~pp~~~~~~n~~~~~~~~y~r~l~~~~r~~~~~~g~p~~~~~~~~ 455 (456)
T 4dcu_A 384 MDAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFARAR 455 (456)
T ss_dssp HHHHHHSCCCEETTEECCEEEEEEEETTTTEEEEEESCGGGSCHHHHHHHHHHHHHHHCCTTCCCEEEEEC-
T ss_pred HHHHHHCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 999971799977993434897865899998899996685559978999999999986799743389999648
No 3
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=1.00 E-value=1 Score=556.60 Aligned_cols=424 Identities=31% Similarity=0.503 Sum_probs=353.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCCEEEEEEEEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99899990799978899999975986033178998301330799989779019998478975544742068899999999
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 232 (640)
Q Consensus 153 ~~~V~IvG~~nvGKSSLiN~L~~~~~a~v~~~~g~~tT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 232 (640)
+|+|+|+|+||||||||+|+|++.+.+++.+.+| +|++..++.+.+.+..+.+|||||++.... +.+..++..++..
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g--~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~-~~~~~~~~~~~~~ 77 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEG--VTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ-DIISQKMKEVTLN 77 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC----------------CCSEEEEEETTEEEEEEECTTTTSSGG-GCCCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCEECCCCC--CCCCEEEEEEEECCEEEEEEECCCCCCCCC-CHHHHHHHHHHHH
T ss_conf 9889998899998999999985888713069999--754511699999992899997988465564-0589999999999
Q ss_pred HHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHH-HHHHHCCCCCCEEEECCCCC
Q ss_conf 97404669999504799995209999999972999858999617887768965147899-99986299982996146787
Q 006555 233 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAA-AESLMLGFGDPIAISAETGL 311 (640)
Q Consensus 233 ~~~~ad~il~VvD~~~~~~~~~~~~~~~L~~~~~~~p~IlV~NK~Dl~~~~~~~~~~~~-~~~~~~g~~~~i~vSA~~g~ 311 (640)
++++||++++|+|++.+.+..+..+.++++.. ++|+++|+||+|+... ..... .+++.+++.+++++||++|.
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~--~~p~ilv~NK~D~~~~----~~~~~~~~~~~lg~~~~~~iSA~~g~ 151 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKEDESLADFLRKS--TVDTILVANKAENLRE----FEREVKPELYSLGFGEPIPVSAEHNI 151 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH--TCCEEEEEESCCSHHH----HHHHTHHHHGGGSSCSCEECBTTTTB
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC--CCCEEEEEECCCCCCC----CHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 99869999999879989897999999999875--9998999959898433----67789999996389977999664789
Q ss_pred CHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 84578997500227777653034344589998899999864456883499990899846799999850891221686540
Q 006555 312 GMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGL 391 (640)
Q Consensus 312 gi~eL~~~I~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKSsLin~l~~~~~~~~~~~~gt 391 (640)
|+++|++.+.+.+++.. ... .+..+....++|+++|+||||||||+|+|++..+..+++.+|+
T Consensus 152 gv~~L~~~i~~~l~~~~----~~~-------------~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gt 214 (439)
T 1mky_A 152 NLDTMLETIIKKLEEKG----LDL-------------ESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGT 214 (439)
T ss_dssp SHHHHHHHHHHHHHHTT----CCS-------------SSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC--
T ss_pred CHHHHHHHHHHHCCCCC----CCC-------------HHCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 97999999998555322----000-------------1001234671699978899987999999838765246899997
Q ss_pred EEEEEEEEEEECCEEEEEEEECCCCCCCCC--CCCHHHHHHHHHHHHHHCCEEEEEECCCHH----------HHHHCCCC
Q ss_conf 365599999998959999970798852236--772014799999997514589999116378----------89873994
Q 006555 392 TRDSVRVHFEYQGRTVYLVDTAGWLQREKE--KGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRG 459 (640)
Q Consensus 392 T~d~~~~~~~~~g~~~~liDTpG~~~~~~~--~~~e~~~~~~~~~~i~~advvllViDas~~----------~~~~~~~p 459 (640)
|+|+..+.+.++|..+.+|||||+++.... ...+.+...++..+++.+|++++|+|++++ .....++|
T Consensus 215 T~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~ 294 (439)
T 1mky_A 215 TRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRA 294 (439)
T ss_dssp ----CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE
T ss_pred CCCCEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 48735799999997899999989764455650359999999999888539999999858878898999999999982998
Q ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHCHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 99998289788985625899999987089998538889999689901655999899999999999998149994799999
Q 006555 460 LVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRW 539 (640)
Q Consensus 460 ~Iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gi~~l~~~i~~~~~~~~~~i~t~~ln~~ 539 (640)
+++|+||||+.+.+.. ..+ .+..++...+....+.+++++||++|.|++++|+.+.+.+.++..+++|+.||+|
T Consensus 295 ~ilv~NK~Dl~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~i~t~~ln~~ 368 (439)
T 1mky_A 295 SVVVFNKWDLVVHREK--RYD----EFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTTKVPSSAINSA 368 (439)
T ss_dssp EEEEEECGGGSTTGGG--CHH----HHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred EEEEEECCCCCCCHHH--HHH----HHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 8999989028984036--899----9999999871427999679997999989999999999999860561787999999
Q ss_pred HHHHHHCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCCEEEEEEEEEC
Q ss_conf 99998609999999877076644059999989999368998898899998998672-3799950179999606
Q 006555 540 LRKVMGRHSWKDQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKE-DFDLGGIPIRITQRSV 611 (640)
Q Consensus 540 l~~~~~~~~~~~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~r~-~~~~~g~pi~l~~~~~ 611 (640)
+.++...+|+| ++.|++|++|+..+||+|++|+|.++.++++|+|||+|+||+ .|+|.|+||++.||.+
T Consensus 369 l~~~~~~~~~~---~~~ki~y~~q~~~~p~~~~~~~n~~~~~~~~y~r~l~~~~r~~~~~~~~~pi~~~~~~~ 438 (439)
T 1mky_A 369 LQKVLAFTNLP---RGLKIFFGVQVDIKPPTFLFFVNSIEKVKNPQKIFLRKLIRDYVFPFEGSPIFLKFKRS 438 (439)
T ss_dssp HHHHHTTCCCS---TTCCEEEEEEEETTTTEEEEEESCSTTCCHHHHHHHHHHHHHHTCCCTTCCCEEEEEEC
T ss_pred HHHHHHCCCCC---CCCEEEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 99999708999---87079999956899998999982743399799999999987861899988789999458
No 4
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=1.00 E-value=1 Score=189.24 Aligned_cols=212 Identities=19% Similarity=0.195 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC--HHH-HHHHHHHCCC--
Q ss_conf 99999999974046699995047999952099999999729998589996178877689651--478-9999986299--
Q 006555 225 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS--LAG-AAAESLMLGF-- 299 (640)
Q Consensus 225 ~~~~~~~~~~~~ad~il~VvD~~~~~~~~~~~~~~~L~~~~~~~p~IlV~NK~Dl~~~~~~~--~~~-~~~~~~~~g~-- 299 (640)
++.+....++..++++++|+|+++.......++. +...++|+++|+||+|+....... ... ....+...|+
T Consensus 60 ~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~----~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~ 135 (369)
T 3ec1_A 60 DFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLP----RFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCP 135 (369)
T ss_dssp HHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHH----HHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHH----HHHCCCCEEEEEECHHCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999762368689999979887775406799----984799789999974308975688999999999999769985
Q ss_pred CCCEEEECCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 98299614678784578997500227777653034344589998899999864456883499990899846799999850
Q 006555 300 GDPIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQ 379 (640)
Q Consensus 300 ~~~i~vSA~~g~gi~eL~~~I~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKSsLin~l~~ 379 (640)
.+++++||++|.|+++|++.+.+... ..+++++|.+|+|||||+|+|++
T Consensus 136 ~~v~~iSA~~g~gi~~L~~~I~~~~~-------------------------------~~~i~~vG~~nvGKStliN~L~~ 184 (369)
T 3ec1_A 136 VDVCLVSAAKGIGMAKVMEAINRYRE-------------------------------GGDVYVVGCTNVGKSTFINRIIE 184 (369)
T ss_dssp SEEEECBTTTTBTHHHHHHHHHHHHT-------------------------------TSCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC-------------------------------CCCEEEECCCCCCHHHHHHHHHH
T ss_conf 40899978889898999999986234-------------------------------67189991799964899999876
Q ss_pred C-----CCEEECCCCCCEEEEEEEEEEECCEEEEEEEECCCCCCCC-CCCCHHHHHHHHHHHH---HHCCEEEEEECCCH
Q ss_conf 8-----9122168654036559999999895999997079885223-6772014799999997---51458999911637
Q 006555 380 E-----DRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKNL---MRAHVVALVLDAEE 450 (640)
Q Consensus 380 ~-----~~~~~~~~~gtT~d~~~~~~~~~g~~~~liDTpG~~~~~~-~~~~e~~~~~~~~~~i---~~advvllViDas~ 450 (640)
. +...+++.+|||++.....+ +..+.++||||+..... ..... ...+..+ ...|.+++++|+..
T Consensus 185 ~~~~~~~~~~~~~~~gtT~~~~~~~~---~~~~~liDtPG~~~~~~~~~~l~----~~~l~~~~~~~~i~~~~~~l~~~~ 257 (369)
T 3ec1_A 185 EATGKGNVITTSYFPGTTLDMIEIPL---ESGATLYDTPGIINHHQMAHFVD----ARDLKIITPKREIHPRVYQLNEGQ 257 (369)
T ss_dssp HHHHTTCCCEEEECTTSSCEEEEEEC---STTCEEEECCSCCCCSSGGGGSC----TTTHHHHSCSSCCCCEEEEECTTE
T ss_pred HCCCCCCCEEECCCCCEEEEEEEEEE---CCCEEEEECCCCCCHHHHHHHHH----HHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 51588652020589976776699980---79749996888576778888876----999999860555684599985896
Q ss_pred H----------HHHHCCCCEEEEEECCCCCCCCCCHHH
Q ss_conf 8----------898739949999828978898562589
Q 006555 451 V----------RAVEEGRGLVVIVNKMDLLSGRQNSAL 478 (640)
Q Consensus 451 ~----------~~~~~~~p~Iiv~NK~Dl~~~~~~~~~ 478 (640)
. .....+.|+++++||.|.++.......
T Consensus 258 ~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~ 295 (369)
T 3ec1_A 258 TLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKA 295 (369)
T ss_dssp EEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGH
T ss_pred EEEECCEEEEEECCCCCCEEEEEECCCCCCCCCCHHHH
T ss_conf 67788878998726899559999458754454437779
No 5
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=1.00 E-value=1 Score=189.01 Aligned_cols=190 Identities=18% Similarity=0.165 Sum_probs=136.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCE-EECCCCCCEEEEEEEEEEE-CC--EEEEEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 8834999908998467999998508912-2168654036559999999-89--599999707988522367720147999
Q 006555 356 LPLQLAIVGRPNVGKSTLLNALLQEDRV-LVGPEAGLTRDSVRVHFEY-QG--RTVYLVDTAGWLQREKEKGPASLSVMQ 431 (640)
Q Consensus 356 ~~~kv~ivG~~nvGKSsLin~l~~~~~~-~~~~~~gtT~d~~~~~~~~-~g--~~~~liDTpG~~~~~~~~~~e~~~~~~ 431 (640)
..++|+++|.+|+|||||+|+|++.... ...+..+++.... .... ++ ..+.+|||||+.+... .
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~----------~ 77 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPV--TFLDDQGNVIKFNVWDTAGQEKKAV----------L 77 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEE--EEEBTTSCEEEEEEEEECSGGGTSC----------C
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEE--EEEECCCCEEEEEEEECCCCHHHCH----------H
T ss_conf 742799999999789999999965998777788424025899--9980799689999984587354235----------7
Q ss_pred HHHHHHHCCEEEEEECCCHH--------------HHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCHHHHHHHCCCC
Q ss_conf 99997514589999116378--------------8987399499998289788985625899999987089998538889
Q 006555 432 SRKNLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 497 (640)
Q Consensus 432 ~~~~i~~advvllViDas~~--------------~~~~~~~p~Iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (640)
...++..+|++++|+|+++. .....++|+++|+||+|+.+.... ..+....+...
T Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-----------~~~~~~~~~~~ 146 (218)
T 4djt_A 78 KDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKI-----------SKKLVMEVLKG 146 (218)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----C-----------CHHHHHHHTTT
T ss_pred HHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC-----------CHHHHHHHHHH
T ss_conf 7888615989999996978899999999999999864899978999989877524545-----------99999999998
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCE
Q ss_conf 9996899016559998999999999999981499947999999999860999999987707664405999998
Q 006555 498 TGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQPKIKYFTQVKARPPT 570 (640)
Q Consensus 498 ~~~~~v~iSA~~g~gi~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~~~~~~~~ki~~~~q~~~~pp~ 570 (640)
.+++++++||++|.|++++|..+.+.+.....+..+..++.++.+++..++++.. ..+++|++|+..+|||
T Consensus 147 ~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~y~~q~~~~pp~ 217 (218)
T 4djt_A 147 KNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTEVNYDYHSPEE--SKYIDYMEQASKMAPE 217 (218)
T ss_dssp CCCEEEEEBTTTTBTTTHHHHHHHHHHHCCTTCCBCSCCCCCBCCCCCCCCCC--------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHHCCCCC
T ss_conf 5992899966999798999999999986142224346667678755567458233--4568999998613789
No 6
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=1.00 E-value=1 Score=187.95 Aligned_cols=249 Identities=20% Similarity=0.314 Sum_probs=170.2
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCCEEEEEEEEEEEECCEEEEEEECCCCCCCCCCC-CHHHHH-HHH
Q ss_conf 999899990799978899999975986033178998301330799989779019998478975544742-068899-999
Q 006555 152 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSG-SILDRT-AGM 229 (640)
Q Consensus 152 ~~~~V~IvG~~nvGKSSLiN~L~~~~~a~v~~~~g~~tT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~-~~~~~~-~~~ 229 (640)
..++|+|+|++|||||||+|+|++...+.+++.+| +|++...+.+.+++..+.+|||||+....... .....+ ...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~g--tT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPG--TTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC--------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCC--CCCCCEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 67169997889998799999983876524689999--7487357999999978999999897644556503599999999
Q ss_pred HHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHH----HHHHHHCCCCCCEEE
Q ss_conf 9999740466999950479999520999999997299985899961788776896514789----999986299982996
Q 006555 230 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGA----AAESLMLGFGDPIAI 305 (640)
Q Consensus 230 ~~~~~~~ad~il~VvD~~~~~~~~~~~~~~~L~~~~~~~p~IlV~NK~Dl~~~~~~~~~~~----~~~~~~~g~~~~i~v 305 (640)
+..++..+|++++|+|++.+.+..+..+...+... ++|+++|+||+|+.........+. ...+...+..+++++
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~--~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMERR--GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFT 334 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT--TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC--CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 99888539999999858878898999999999982--9988999989028984036899999999987142799967999
Q ss_pred ECCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEE
Q ss_conf 14678784578997500227777653034344589998899999864456883499990899846799999850891221
Q 006555 306 SAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLV 385 (640)
Q Consensus 306 SA~~g~gi~eL~~~I~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ivG~~nvGKSsLin~l~~~~~~~~ 385 (640)
||++|.|++++++.+.+.+... ..++ +|+.+|+++++... .
T Consensus 335 SA~~g~gv~~l~~~i~~~~~~~-----------------------------~~~i---------~t~~ln~~l~~~~~-~ 375 (439)
T 1mky_A 335 SADKGWNIDRMIDAMNLAYASY-----------------------------TTKV---------PSSAINSALQKVLA-F 375 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHH-----------------------------TCCC---------CHHHHHHHHHHHHT-T
T ss_pred ECCCCCCHHHHHHHHHHHHHHH-----------------------------CCCC---------CHHHHHHHHHHHHH-C
T ss_conf 7999989999999999999860-----------------------------5617---------87999999999997-0
Q ss_pred CCCCCCEEEEEEEEEEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHCCCCEEEEEE
Q ss_conf 68654036559999999895999997079885223677201479999999751458999911637889873994999982
Q 006555 386 GPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVN 465 (640)
Q Consensus 386 ~~~~gtT~d~~~~~~~~~g~~~~liDTpG~~~~~~~~~~e~~~~~~~~~~i~~advvllViDas~~~~~~~~~p~Iiv~N 465 (640)
.+.| ++.+ +.-..-.++ ....+++.+|
T Consensus 376 ~~~~--------------------------~~~k---------------------i~y~~q~~~------~p~~~~~~~n 402 (439)
T 1mky_A 376 TNLP--------------------------RGLK---------------------IFFGVQVDI------KPPTFLFFVN 402 (439)
T ss_dssp CCCS--------------------------TTCC---------------------EEEEEEEET------TTTEEEEEES
T ss_pred CCCC--------------------------CCCE---------------------EEEEEECCC------CCCEEEEEEC
T ss_conf 8999--------------------------8707---------------------999995689------9998999982
Q ss_pred CCCCCCCCCCHHHHHHHHHHCHHHHHH-HCCCCCCCCEEEE
Q ss_conf 897889856258999999870899985-3888999968990
Q 006555 466 KMDLLSGRQNSALYKRVKEAVPQEIQT-VIPQVTGIPVVFT 505 (640)
Q Consensus 466 K~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~i 505 (640)
|||+++.. +.+.+...+++ .+.+. +.|+...
T Consensus 403 ~~~~~~~~--------y~r~l~~~~r~~~~~~~-~~pi~~~ 434 (439)
T 1mky_A 403 SIEKVKNP--------QKIFLRKLIRDYVFPFE-GSPIFLK 434 (439)
T ss_dssp CSTTCCHH--------HHHHHHHHHHHHTCCCT-TCCCEEE
T ss_pred CCCCCCHH--------HHHHHHHHHHHHHCCCC-CCCEEEE
T ss_conf 74339979--------99999999878618999-8878999
No 7
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=1.00 E-value=1 Score=187.62 Aligned_cols=170 Identities=23% Similarity=0.359 Sum_probs=135.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCCEEEEEEEEEEEEC-CEEEEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9989999079997889999997598603317899830133079998977-901999847897554474206889999999
Q 006555 153 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG-DLRFKVLDSAGLETEATSGSILDRTAGMTA 231 (640)
Q Consensus 153 ~~~V~IvG~~nvGKSSLiN~L~~~~~a~v~~~~g~~tT~d~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 231 (640)
...|+++|++|||||||+|+|++.+.++++..++ +|++...+..... +.++.+|||||+............+...+.
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~--tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAG--TTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSC--CCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCC--CEEEEEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9789999999996999999996898545689998--30667899993389981999989299864432068899999999
Q ss_pred HHHHCCCEEEEEEECCCCCCHHHHHH-HHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHC-CCCCCEEEECCC
Q ss_conf 99740466999950479999520999-9999972999858999617887768965147899999862-999829961467
Q 006555 232 NVLAKTQFAIFMIDVRSGLHPLDLEV-GKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLML-GFGDPIAISAET 309 (640)
Q Consensus 232 ~~~~~ad~il~VvD~~~~~~~~~~~~-~~~L~~~~~~~p~IlV~NK~Dl~~~~~~~~~~~~~~~~~~-g~~~~i~vSA~~ 309 (640)
.++..+|++++|+|++++.+..+..+ .+.+... ++|+++|+||+|+..+..............+ .+.+++++||++
T Consensus 88 ~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~ 165 (308)
T 3iev_A 88 QSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALK 165 (308)
T ss_dssp HHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTT
T ss_pred HHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHC--CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 8761298999999688789802389999998755--99889999790078998999999999998565777089986899
Q ss_pred CCCHHHHHHHHCCCHHH
Q ss_conf 87845789975002277
Q 006555 310 GLGMTELYEALRPSVED 326 (640)
Q Consensus 310 g~gi~eL~~~I~~~l~~ 326 (640)
|.|++++++.+.+.+++
T Consensus 166 g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 166 GANLDELVKTILKYLPE 182 (308)
T ss_dssp TBSHHHHHHHHHHHSCB
T ss_pred CCCHHHHHHHHHHHCCC
T ss_conf 98999999999986766
No 8
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=1.00 E-value=1 Score=185.81 Aligned_cols=259 Identities=17% Similarity=0.099 Sum_probs=129.8
Q ss_pred HHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCC
Q ss_conf 6752099-804689999999999999998522442111010123656655321001257------987765568999976
Q 006555 58 FSRFLGS-PFYDFMCFLLLFVNVSIMYWFSGSLYQVGSSLKCNLLPEVPRGFCGVVQNE------ALEDTHVEPEPDGVV 130 (640)
Q Consensus 58 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 130 (640)
+...++- ..++..-+++-++...+-..-+ ..+...++..|.+|++ +.|.+..+.. |+++..++.+++.+
T Consensus 74 l~~~~~~~~v~dr~~lil~i~~~ra~t~~~--~~q~~la~l~~~~~rl-~~~~~l~~~~~~i~~~g~ge~~~e~~~~~~- 149 (364)
T 2qtf_A 74 IRRELKGKEVLDKILLLLEIFALHAGSKEA--KMQIELARLKYELPII-KETYTKSKIGEQQGPLGAGTYGVESTIKFY- 149 (364)
T ss_dssp HHHHHTTCEEECHHHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHH-HHC---------------------CHHHHH-
T ss_pred HHHHHCCCCEEEHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHCHHH-HHHHHHHHHCCCCCCCCCCHHHHHHHHHHH-
T ss_conf 999868986566576999999744866225--6999999876011022-223679885588876786777899999999-
Q ss_pred CCCCCCHHHCCCCCCCC--------CCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCCEEEEEEEEEEEECC
Q ss_conf 21233311049875433--------3456999899990799978899999975986033178998301330799989779
Q 006555 131 EDHKVKPLYEKPVDFTK--------IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD 202 (640)
Q Consensus 131 ~~~~~~~~~~~~~~~~~--------~~~~~~~~V~IvG~~nvGKSSLiN~L~~~~~a~v~~~~g~~tT~d~~~~~~~~~~ 202 (640)
+.++..+..++..... ......+.|+|+|++|||||||+|+|++... .+.+.++ +|++...+.+.+.+
T Consensus 150 -~~~i~~l~~~l~~~~~~r~~~r~~r~~~~~~~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~--~T~d~~~~~i~~~g 225 (364)
T 2qtf_A 150 -KRRINKLMKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLF--TTMSPKRYAIPINN 225 (364)
T ss_dssp -HHHHHHHHHHHHHHHC-------------CCEEEEECBTTSSHHHHHHHHHCC--------------CCSCEEEEEETT
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCC-CCCCCCC--CCCCCEEEEEEECC
T ss_conf -9999999999999999999988765134995899999999979999999977886-5568866--64277789999899
Q ss_pred EEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC--CHHHH-HHHHHHHHH-CCCCCEEEEECCCC
Q ss_conf 019998478975544742068899999999974046699995047999--95209-999999972-99985899961788
Q 006555 203 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL--HPLDL-EVGKWLRKH-APQIKPIVAMNKCE 278 (640)
Q Consensus 203 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~--~~~~~-~~~~~L~~~-~~~~p~IlV~NK~D 278 (640)
..+.+|||||+....+.+. . +.+..+...+..+|++++|+|++++. ..... .+.+.+... ..++|+++|+||+|
T Consensus 226 ~~v~l~DT~G~i~~lp~~l-v-e~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~D 303 (364)
T 2qtf_A 226 RKIMLVDTVGFIRGIPPQI-V-DAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKID 303 (364)
T ss_dssp EEEEEEECCCBCSSCCGGG-H-HHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGG
T ss_pred EEEEEEECCCCHHCCCHHH-H-HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 7899995897120188899-9-9999999999749989999979998520799999999999970768999899997978
Q ss_pred CCCCCCCCHHHHH-HHHHHC-C-CCCCEEEECCCCCCHHHHHHHHCCCHHH
Q ss_conf 7768965147899-999862-9-9982996146787845789975002277
Q 006555 279 SLHNGTGSLAGAA-AESLML-G-FGDPIAISAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 279 l~~~~~~~~~~~~-~~~~~~-g-~~~~i~vSA~~g~gi~eL~~~I~~~l~~ 326 (640)
+............ .....+ . ..+++++||++|.|++++++.|.+.+..
T Consensus 304 l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 304 KINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 998357799999999999843789857999799874999999999997124
No 9
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=1.00 E-value=1 Score=185.68 Aligned_cols=166 Identities=24% Similarity=0.300 Sum_probs=130.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCCEEEEEEEEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 98999907999788999999759860331789983013307999897790199984789755447420688999999999
Q 006555 154 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 233 (640)
Q Consensus 154 ~~V~IvG~~nvGKSSLiN~L~~~~~a~v~~~~g~~tT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 233 (640)
..|+|+|+||||||||+|+|++.+.+++++.++ +|++...+.....+.++.+|||||+.... ..+...+......+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~--tTr~~i~~i~~~~~~~l~l~DTpG~~~~~--~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQ--TTRKRLRGILTEGRRQIVFVDTPGLHKPM--DALGEFMDQEVYEA 83 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSC--CCCSCEEEEEEETTEEEEEEECCCCCCCC--SHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCEEEECCCCC--CEEEEEEEEEEECCCEEEEECCCCCCCHH--HHHHHHHHHHHHHH
T ss_conf 889999999998999999995893565359998--12689999997089579995275302400--57899999999999
Q ss_pred HHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCH
Q ss_conf 74046699995047999952099999999729998589996178877689651478999998629998299614678784
Q 006555 234 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 313 (640)
Q Consensus 234 ~~~ad~il~VvD~~~~~~~~~~~~~~~L~~~~~~~p~IlV~NK~Dl~~~~~~~~~~~~~~~~~~g~~~~i~vSA~~g~gi 313 (640)
+..+|++++|+|++++.+..+..+.+.++....++|+++|+||+|+...... ........ .++.+++++||++|.|+
T Consensus 84 l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~--~~~~~~~~iSA~~g~gv 160 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE-AMKAYHEL--LPEAEPRMLSALDERQV 160 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH-HHHHHHHT--STTSEEEECCTTCHHHH
T ss_pred HHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHH-HHHHHHHH--CCCCCEEEEECCCCCCH
T ss_conf 8549999999979999986799999999864589988999987124773678-99999985--37686799958888799
Q ss_pred HHHHHHHCCCHHH
Q ss_conf 5789975002277
Q 006555 314 TELYEALRPSVED 326 (640)
Q Consensus 314 ~eL~~~I~~~l~~ 326 (640)
+++++.+...+++
T Consensus 161 ~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 161 AELKADLLALMPE 173 (301)
T ss_dssp HHHHHHHHTTCCB
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999986664
No 10
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=185.49 Aligned_cols=172 Identities=19% Similarity=0.320 Sum_probs=132.6
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCCEEEEEEEEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHH-
Q ss_conf 6999899990799978899999975986033178998301330799989779019998478975544742068899999-
Q 006555 151 NLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGM- 229 (640)
Q Consensus 151 ~~~~~V~IvG~~nvGKSSLiN~L~~~~~a~v~~~~g~~tT~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~- 229 (640)
...++|+++|++|||||||+|+|++.....+++.++ +|++........++..+.+|||||+..........+++...
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~g--tT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAG--TTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-----------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCC--CEEEEEEEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 467279997579988779999972877423148999--616136899998991899997988470755442178999999
Q ss_pred HHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHH----HHHHHCCCCCCEEE
Q ss_conf 99997404669999504799995209999999972999858999617887768965147899----99986299982996
Q 006555 230 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAA----AESLMLGFGDPIAI 305 (640)
Q Consensus 230 ~~~~~~~ad~il~VvD~~~~~~~~~~~~~~~L~~~~~~~p~IlV~NK~Dl~~~~~~~~~~~~----~~~~~~g~~~~i~v 305 (640)
+..++..+|++++|+|++++.+.++..+...+... ++|+++|+||+|+.........+.. ..+......+++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~--~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA--GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT--TCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHC--CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 99988759999999828767768999999999983--9967999989127886367899999999986035799978998
Q ss_pred ECCCCCCHHHHHHHHCCCHHH
Q ss_conf 146787845789975002277
Q 006555 306 SAETGLGMTELYEALRPSVED 326 (640)
Q Consensus 306 SA~~g~gi~eL~~~I~~~l~~ 326 (640)
||++|.|++++++.+.+.+..
T Consensus 329 SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHH
T ss_conf 155688999999999999998
Done!