BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006556
(640 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EIJ|A Chain A, Crystal Structure Of Pdcd4
pdb|3EIJ|B Chain B, Crystal Structure Of Pdcd4
Length = 321
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 141/278 (50%), Gaps = 8/278 (2%)
Query: 348 KRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASV 407
+ +++ + II EYF D E+ L DL E ++LA++ K +EM S
Sbjct: 14 RAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSK 73
Query: 408 LLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEE 467
LLS L + ST D+ F LL+ + ALD A + F+ARAV D +L ++
Sbjct: 74 LLSDLCGTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYID- 132
Query: 468 ISSKLPPNC-SGSETVRVARSLIAARHAGERLLRCWGGGTG-WAVEDAKDKIMKLLEEYE 525
S K +C + A L++ G+R WG G G +V +I LL+EY
Sbjct: 133 -SYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDMLLKEYL 191
Query: 526 SGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDR----MLDLLQECFSEGLITTN 581
G +SEA C+++L +P F+HE+V +A++M +E + +LDLL+ + IT +
Sbjct: 192 LSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 251
Query: 582 QMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKG 619
QM +G+ RI + + D+ LD+P++ +VE + G
Sbjct: 252 QMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 289
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 131/300 (43%), Gaps = 13/300 (4%)
Query: 48 PLDD--YKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKE 105
PLD+ ++K + II+EYF GD A LR+L E VS+A++ +E
Sbjct: 10 PLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHRE 69
Query: 106 MASVLLSALYADVISPDQIRDGFVILLESXXXXXXXXXXXXXXXXXFVARAVVDDILPPA 165
M S LLS L V+S + F LL+ F+ARAV D IL
Sbjct: 70 MTSKLLSDLCGTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNT 129
Query: 166 FLTRAKKTLPAASKGFQVIQTAEKS--YLSAPHHAELVERRWG-GSTHITVEEVKKKIAD 222
++ K T+ Q +K+ LS + + WG G +V + K+I
Sbjct: 130 YIDSYKGTVDCV----QARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDM 185
Query: 223 LLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPXXXXXXXXXXXXXX 282
LL+EY+ SGD EA C++EL V FHHE+V A+++ +E T E
Sbjct: 186 LLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLE-STGESTFKMILDLLKSLWK 244
Query: 283 XSS---SQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGR 339
S+ QM +G+ R+ + D+ LD+P + ++ + V G + GR
Sbjct: 245 SSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSRGR 304
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 106/266 (39%), Gaps = 31/266 (11%)
Query: 217 KKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPXXXXXXXX 276
+K + +++EY E GD E +R+L + V A+ LA+E + +
Sbjct: 17 EKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLS 76
Query: 277 XXXXXXXSSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWL---------- 326
S++ + K F +L + L +LALD P A L + A+ +G L
Sbjct: 77 DLCGTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKG 136
Query: 327 ------------DASFMKSLGEDGRVQQE-------DEKVKRYKEEVVTIIHEYFLSDDI 367
A+ + S+ + G+ + + V +E+ ++ EY LS DI
Sbjct: 137 TVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDMLLKEYLLSGDI 196
Query: 368 PELIRSLEDLGAPEFNPIFLKKVITLAMDRKNRE--KEMASVLLSALHIEIFSTEDIVNG 425
E L++L P F+ + + I + ++ K + +L S + + + G
Sbjct: 197 SEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRG 256
Query: 426 FVMLLESAEDTALDILDASNELALFL 451
+ + D LD+ + + L F+
Sbjct: 257 YERIYNEIPDINLDVPHSYSVLERFV 282
>pdb|3EIQ|C Chain C, Crystal Structure Of Pdcd4-eif4a
Length = 358
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 139/276 (50%), Gaps = 8/276 (2%)
Query: 350 YKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLL 409
+++ + II EYF D E+ L DL E ++LA++ K +EM S LL
Sbjct: 53 FEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLL 112
Query: 410 SALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIS 469
S L + ST D+ F LL+ + ALD A + F+ARAV D +L ++ S
Sbjct: 113 SDLCGTVMSTNDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYID--S 170
Query: 470 SKLPPNC-SGSETVRVARSLIAARHAGERLLRCWGGGTGWA-VEDAKDKIMKLLEEYESG 527
K +C + A L++ G+R WG G G V +I LL+EY
Sbjct: 171 YKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQPVNHLVKEIDMLLKEYLLS 230
Query: 528 GVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDR----MLDLLQECFSEGLITTNQM 583
G +SEA C+++L +P F+HE+V +A+VM +E + +LDLL+ + IT +QM
Sbjct: 231 GDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290
Query: 584 TKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKG 619
+G+ RI + + D+ LD+P++ +VE + G
Sbjct: 291 KRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 326
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 148/326 (45%), Gaps = 17/326 (5%)
Query: 8 GKGTWGKLLDT-DVESHIDRNDPNYDSGEEPYQLVGATISDPLDD--YKKAVASIIEEYF 64
GKG WG DVE +D DPNYD +E V T+ PLD+ ++K + II+EYF
Sbjct: 9 GKGVWGTPGQVYDVE-EVDVKDPNYDDDQE--NCVYETVVLPLDETAFEKTLTPIIQEYF 65
Query: 65 STGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQI 124
GD A LR+L E VS+A++ +EM S LLS L V+S + +
Sbjct: 66 EHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTNDV 125
Query: 125 RDGFVILLESXXXXXXXXXXXXXXXXXFVARAVVDDILPPAFLTRAKKTLPAASKGFQVI 184
F LL+ F+ARAV D IL ++ K T+ Q
Sbjct: 126 EKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCV----QAR 181
Query: 185 QTAEKS--YLSAPHHAELVERRWG-GSTHITVEEVKKKIADLLREYVESGDAFEACRCIR 241
+K+ LS + + WG G V + K+I LL+EY+ SGD EA C++
Sbjct: 182 AALDKATVLLSMSKGGKRKDSVWGSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLK 241
Query: 242 ELGVSFFHHEVVKRALVLAMEIRTAEPXXXXXXXXXXXXXXXSS---SQMAKGFARLEES 298
EL V FHHE+V A+V+ +E T E S+ QM +G+ R+
Sbjct: 242 ELEVPHFHHELVYEAIVMVLE-STGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNE 300
Query: 299 LDDLALDIPSARNLFQSIVPVAISEG 324
+ D+ LD+P + ++ + V G
Sbjct: 301 IPDINLDVPHSYSVLERFVEECFQAG 326
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 106/266 (39%), Gaps = 31/266 (11%)
Query: 217 KKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPXXXXXXXX 276
+K + +++EY E GD E +R+L + V A+ LA+E + +
Sbjct: 54 EKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLS 113
Query: 277 XXXXXXXSSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWL---------- 326
S++ + K F +L + L +LALD P A L + A+ +G L
Sbjct: 114 DLCGTVMSTNDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKG 173
Query: 327 ------------DASFMKSLGEDGRVQQE-------DEKVKRYKEEVVTIIHEYFLSDDI 367
A+ + S+ + G+ + + V +E+ ++ EY LS DI
Sbjct: 174 TVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQPVNHLVKEIDMLLKEYLLSGDI 233
Query: 368 PELIRSLEDLGAPEFNPIFLKKVITLAMDRKNRE--KEMASVLLSALHIEIFSTEDIVNG 425
E L++L P F+ + + I + ++ K + +L S + + + G
Sbjct: 234 SEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 293
Query: 426 FVMLLESAEDTALDILDASNELALFL 451
+ + D LD+ + + L F+
Sbjct: 294 YERIYNEIPDINLDVPHSYSVLERFV 319
>pdb|2ZU6|B Chain B, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|E Chain E, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 307
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 137/276 (49%), Gaps = 8/276 (2%)
Query: 350 YKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLL 409
+++ + II EYF D E+ L DL E ++LA++ K +E S LL
Sbjct: 2 FEKTLTPIIQEYFEHGDTNEVAEXLRDLNLGEXKSGVPVLAVSLALEGKASHREXTSKLL 61
Query: 410 SALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIS 469
S L + ST D+ F LL+ + ALD A + F+ARAV D +L ++ S
Sbjct: 62 SDLCGTVXSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYID--S 119
Query: 470 SKLPPNC-SGSETVRVARSLIAARHAGERLLRCWGGGTG-WAVEDAKDKIMKLLEEYESG 527
K +C + A L++ G+R WG G G +V +I LL+EY
Sbjct: 120 YKGTVDCVQARAALDKATVLLSXSKGGKRKDSVWGSGGGQQSVNHLVKEIDXLLKEYLLS 179
Query: 528 GVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDR----MLDLLQECFSEGLITTNQM 583
G +SEA C+++L +P F+HE+V +A++ +E + +LDLL+ + IT +Q
Sbjct: 180 GDISEAEHCLKELEVPHFHHELVYEAIIXVLESTGESTFKXILDLLKSLWKSSTITVDQX 239
Query: 584 TKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKG 619
+G+ RI + + D+ LD+P++ +VE + G
Sbjct: 240 KRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 275
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 124/294 (42%), Gaps = 11/294 (3%)
Query: 52 YKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLL 111
++K + II+EYF GD A LR+L E VS+A++ +E S LL
Sbjct: 2 FEKTLTPIIQEYFEHGDTNEVAEXLRDLNLGEXKSGVPVLAVSLALEGKASHREXTSKLL 61
Query: 112 SALYADVISPDQIRDGFVILLESXXXXXXXXXXXXXXXXXFVARAVVDDILPPAFLTRAK 171
S L V S + F LL+ F+ARAV D IL ++ K
Sbjct: 62 SDLCGTVXSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYK 121
Query: 172 KTLPAASKGFQVIQTAEKS--YLSAPHHAELVERRWG-GSTHITVEEVKKKIADLLREYV 228
T+ Q +K+ LS + + WG G +V + K+I LL+EY+
Sbjct: 122 GTVDCV----QARAALDKATVLLSXSKGGKRKDSVWGSGGGQQSVNHLVKEIDXLLKEYL 177
Query: 229 ESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPXXXXXXXXXXXXXXXSS--- 285
SGD EA C++EL V FHHE+V A++ +E T E S+
Sbjct: 178 LSGDISEAEHCLKELEVPHFHHELVYEAIIXVLE-STGESTFKXILDLLKSLWKSSTITV 236
Query: 286 SQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGR 339
Q +G+ R+ + D+ LD+P + ++ + V G + GR
Sbjct: 237 DQXKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSRGR 290
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 104/270 (38%), Gaps = 39/270 (14%)
Query: 217 KKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPXXXXXXXX 276
+K + +++EY E GD E +R+L + V A+ LA+E + +
Sbjct: 3 EKTLTPIIQEYFEHGDTNEVAEXLRDLNLGEXKSGVPVLAVSLALEGKASHREXTSKLLS 62
Query: 277 XXXXXXXSSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSL-- 334
S++ + K F +L + L +LALD P A L + A+ +G L +++ S
Sbjct: 63 DLCGTVXSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKG 122
Query: 335 -------------------------------GEDGRVQQEDEKVKRYKEEVVTIIHEYFL 363
G G Q + VK E+ ++ EY L
Sbjct: 123 TVDCVQARAALDKATVLLSXSKGGKRKDSVWGSGGGQQSVNHLVK----EIDXLLKEYLL 178
Query: 364 SDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNRE--KEMASVLLSALHIEIFSTED 421
S DI E L++L P F+ + + I ++ K + +L S + +
Sbjct: 179 SGDISEAEHCLKELEVPHFHHELVYEAIIXVLESTGESTFKXILDLLKSLWKSSTITVDQ 238
Query: 422 IVNGFVMLLESAEDTALDILDASNELALFL 451
G+ + D LD+ + + L F+
Sbjct: 239 XKRGYERIYNEIPDINLDVPHSYSVLERFV 268
>pdb|2HM8|A Chain A, Solution Structure Of The C-Terminal Ma-3 Domain Of Pdcd4
Length = 136
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 68/121 (56%), Gaps = 4/121 (3%)
Query: 503 GGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKN 562
G G V +I LL+EY G +SEA C+++L +P F+HE+V +A+VM +E
Sbjct: 4 GSGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTG 63
Query: 563 DR----MLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKK 618
+ +LDLL+ + IT +QM +G+ RI + + D+ LD+P++ +VE +
Sbjct: 64 ESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQA 123
Query: 619 G 619
G
Sbjct: 124 G 124
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 206 GGSTHITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRT 265
G V + K+I LL+EY+ SGD EA C++EL V FHHE+V A+V+ +E T
Sbjct: 4 GSGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLE-ST 62
Query: 266 AEPXXXXXXXXXXXXXXXSS---SQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAIS 322
E S+ QM +G+ R+ + D+ LD+P + ++ + V
Sbjct: 63 GESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQ 122
Query: 323 EG 324
G
Sbjct: 123 AG 124
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 41 VGATISDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRH 100
+G+ P++ K + +++EY +GD+ A L+EL +H + + M ++
Sbjct: 3 LGSGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLEST 62
Query: 101 DKE--KEMASVLLSALYADVISPDQIRDGF 128
+ K + +L S + I+ DQ++ G+
Sbjct: 63 GESAFKMILDLLKSLWKSSTITIDQMKRGY 92
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 334 LGEDGRVQQEDEKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITL 393
LG G+ + V +E+ ++ EY LS DI E L++L P F+ + + I +
Sbjct: 3 LGSGGQ-----QPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVM 57
Query: 394 AMDRKNRE--KEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFL 451
++ K + +L S + + + G+ + D LD+ + + L F+
Sbjct: 58 VLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFV 117
>pdb|2NSZ|A Chain A, 1.15 Angstrom Crystal Structure Of The Ma3 Domain Of Pdcd4
Length = 129
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 63/104 (60%), Gaps = 4/104 (3%)
Query: 520 LLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDR----MLDLLQECFSE 575
LL+EY G +SEA C+++L +P F+HE+V +A+VM +E + +LDLL+ +
Sbjct: 13 LLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKS 72
Query: 576 GLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKG 619
IT +QM +G+ RI + + D+ LD+P++ +VE + G
Sbjct: 73 STITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 116
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 213 VEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPXXXX 272
V + K+I LL+EY+ SGD EA C++EL V FHHE+V A+V+ +E T E
Sbjct: 3 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLE-STGESAFKM 61
Query: 273 XXXXXXXXXXXSS---SQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEG 324
S+ QM +G+ R+ + D+ LD+P + ++ + V G
Sbjct: 62 ILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 116
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 48 PLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKE--KE 105
P++ K + +++EY +GD+ A L+EL +H + + M ++ + K
Sbjct: 2 PVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKM 61
Query: 106 MASVLLSALYADVISPDQIRDGF 128
+ +L S + I+ DQ++ G+
Sbjct: 62 ILDLLKSLWKSSTITIDQMKRGY 84
>pdb|2KZT|B Chain B, Structure Of The Tandem Ma-3 Region Of Pdcd4
Length = 131
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 4/119 (3%)
Query: 505 GTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDR 564
G V +I LL+EY G +SEA C+++L +P F+HE+V +A+VM +E +
Sbjct: 1 GGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGES 60
Query: 565 ----MLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKG 619
+LDLL+ + IT +QM +G+ RI + + D+ LD+P++ +VE + G
Sbjct: 61 AFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 119
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 213 VEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPXXXX 272
V + K+I LL+EY+ SGD EA C++EL V FHHE+V A+V+ +E T E
Sbjct: 6 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLE-STGESAFKM 64
Query: 273 XXXXXXXXXXXSS---SQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEG 324
S+ QM +G+ R+ + D+ LD+P + ++ + V G
Sbjct: 65 ILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 119
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 48 PLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKE--KE 105
P++ K + +++EY +GD+ A L+EL +H + + M ++ + K
Sbjct: 5 PVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKM 64
Query: 106 MASVLLSALYADVISPDQIRDGF 128
+ +L S + I+ DQ++ G+
Sbjct: 65 ILDLLKSLWKSSTITIDQMKRGY 87
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 2/109 (1%)
Query: 345 EKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNRE--K 402
+ V +E+ ++ EY LS DI E L++L P F+ + + I + ++ K
Sbjct: 4 QPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFK 63
Query: 403 EMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFL 451
+ +L S + + + G+ + D LD+ + + L F+
Sbjct: 64 MILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFV 112
>pdb|2GGF|A Chain A, Solution Structure Of The Ma3 Domain Of Human Programmed
Cell Death 4
Length = 137
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 63/104 (60%), Gaps = 4/104 (3%)
Query: 520 LLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDR----MLDLLQECFSE 575
LL+EY G +SEA C+++L +P F+HE+V +A++M +E + +LDLL+ +
Sbjct: 15 LLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKS 74
Query: 576 GLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKG 619
IT +QM +G+ RI + + D+ LD+P++ +VE + G
Sbjct: 75 STITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 118
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 218 KKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPXXXXXXXXX 277
K+I LL+EY+ SGD EA C++EL V FHHE+V A+++ +E T E
Sbjct: 10 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLE-STGESTFKMILDLL 68
Query: 278 XXXXXXSS---SQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEG 324
S+ QM +G+ R+ + D+ LD+P + ++ + V G
Sbjct: 69 KSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 118
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 54 KAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEK-EMASVLLS 112
K + +++EY +GD+ A L+EL +H + + M ++ + +M LL
Sbjct: 10 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLK 69
Query: 113 ALY-ADVISPDQIRDGF 128
+L+ + I+ DQ++ G+
Sbjct: 70 SLWKSSTITVDQMKRGY 86
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 352 EEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNRE--KEMASVLL 409
+E+ ++ EY LS DI E L++L P F+ + + I + ++ K + +L
Sbjct: 10 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLK 69
Query: 410 SALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFL 451
S + + + G+ + D LD+ + + L F+
Sbjct: 70 SLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFV 111
>pdb|2ION|A Chain A, Crystal Structure Of The C-terminal Ma3 Domain Of Pdcd4
(mouse); Form2
Length = 152
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 63/104 (60%), Gaps = 4/104 (3%)
Query: 520 LLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDR----MLDLLQECFSE 575
LL+EY G +SEA C+++L +P F+HE+V +A+VM +E + +LDLL+ +
Sbjct: 15 LLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKS 74
Query: 576 GLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKG 619
IT +QM +G+ RI + + D+ LD+P++ +VE + G
Sbjct: 75 STITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 118
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 213 VEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPXXXX 272
V + K+I LL+EY+ SGD EA C++EL V FHHE+V A+V+ +E T E
Sbjct: 5 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLE-STGESAFKM 63
Query: 273 XXXXXXXXXXXSS---SQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEG 324
S+ QM +G+ R+ + D+ LD+P + ++ + V G
Sbjct: 64 ILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 118
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 48 PLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKE--KE 105
P++ K + +++EY +GD+ A L+EL +H + + M ++ + K
Sbjct: 4 PVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKM 63
Query: 106 MASVLLSALYADVISPDQIRDGF 128
+ +L S + I+ DQ++ G+
Sbjct: 64 ILDLLKSLWKSSTITIDQMKRGY 86
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 2/109 (1%)
Query: 345 EKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNRE--K 402
+ V +E+ ++ EY LS DI E L++L P F+ + + I + ++ K
Sbjct: 3 QPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFK 62
Query: 403 EMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFL 451
+ +L S + + + G+ + D LD+ + + L F+
Sbjct: 63 MILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFV 111
>pdb|2IOS|A Chain A, Crystal Structure Of The C-Terminal Ma3 Domain Of Pdcd4
(Mouse); Form 3
Length = 150
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Query: 520 LLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDR----MLDLLQECFSE 575
LL+EY G +SEA +++L +P F+HE+V +A+VM +E + +LDLL+ +
Sbjct: 15 LLKEYLLSGDISEAEHXLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKS 74
Query: 576 GLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKG 619
IT +QM +G+ RI + + D+ LD+P++ +VE + G
Sbjct: 75 STITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 118
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
Query: 213 VEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPXXXX 272
V + K+I LL+EY+ SGD EA ++EL V FHHE+V A+V+ +E T E
Sbjct: 5 VNHLVKEIDMLLKEYLLSGDISEAEHXLKELEVPHFHHELVYEAIVMVLE-STGESAFKM 63
Query: 273 XXXXXXXXXXXSS---SQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDAS 329
S+ QM +G+ R+ + D+ LD+P + ++ + V G +
Sbjct: 64 ILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQ 123
Query: 330 FMKSLGEDGR 339
GR
Sbjct: 124 LRDLXPSRGR 133
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 48 PLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKE--KE 105
P++ K + +++EY +GD+ A L+EL +H + + M ++ + K
Sbjct: 4 PVNHLVKEIDMLLKEYLLSGDISEAEHXLKELEVPHFHHELVYEAIVMVLESTGESAFKM 63
Query: 106 MASVLLSALYADVISPDQIRDGF 128
+ +L S + I+ DQ++ G+
Sbjct: 64 ILDLLKSLWKSSTITIDQMKRGY 86
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 2/109 (1%)
Query: 345 EKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNRE--K 402
+ V +E+ ++ EY LS DI E L++L P F+ + + I + ++ K
Sbjct: 3 QPVNHLVKEIDMLLKEYLLSGDISEAEHXLKELEVPHFHHELVYEAIVMVLESTGESAFK 62
Query: 403 EMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFL 451
+ +L S + + + G+ + D LD+ + + L F+
Sbjct: 63 MILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFV 111
>pdb|2IOL|A Chain A, Crystal Structure Of The C-Terminal Ma3 Domain Of Pdcd4
(Mouse); Form 1
pdb|2IOL|B Chain B, Crystal Structure Of The C-Terminal Ma3 Domain Of Pdcd4
(Mouse); Form 1
Length = 150
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 63/108 (58%), Gaps = 4/108 (3%)
Query: 516 KIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKND----RMLDLLQE 571
+I LL+EY G +SEA C+++L +P F+HE+V +A+V +E + +LDLL+
Sbjct: 11 EIDXLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVXVLESTGESAFKXILDLLKS 70
Query: 572 CFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKG 619
+ IT +Q +G+ RI + + D+ LD+P++ +VE + G
Sbjct: 71 LWKSSTITIDQXKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 118
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
Query: 213 VEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPXXXX 272
V + K+I LL+EY+ SGD EA C++EL V FHHE+V A+V +E T E
Sbjct: 5 VNHLVKEIDXLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVXVLE-STGESAFKX 63
Query: 273 XXXXXXXXXXXSS---SQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDAS 329
S+ Q +G+ R+ + D+ LD+P + ++ + V G +
Sbjct: 64 ILDLLKSLWKSSTITIDQXKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQ 123
Query: 330 FMKSLGEDGR 339
GR
Sbjct: 124 LRDLCPSRGR 133
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 48 PLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKE--KE 105
P++ K + +++EY +GD+ A L+EL +H + + ++ + K
Sbjct: 4 PVNHLVKEIDXLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVXVLESTGESAFKX 63
Query: 106 MASVLLSALYADVISPDQIRDGF 128
+ +L S + I+ DQ + G+
Sbjct: 64 ILDLLKSLWKSSTITIDQXKRGY 86
>pdb|2KZT|A Chain A, Structure Of The Tandem Ma-3 Region Of Pdcd4
Length = 163
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 3/159 (1%)
Query: 348 KRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASV 407
+ +++ + II EYF D E+ L DL E ++LA++ K +EM S
Sbjct: 7 RAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSK 66
Query: 408 LLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEE 467
LLS L + ST D+ F LL+ + ALD A + F+ARAV D +L ++
Sbjct: 67 LLSDLCGTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYID- 125
Query: 468 ISSKLPPNC-SGSETVRVARSLIAARHAGERLLRCWGGG 505
S K +C + A L++ G+R WG G
Sbjct: 126 -SYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSG 163
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 48 PLDD--YKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKE 105
PLD+ ++K + II+EYF GD A LR+L E VS+A++ +E
Sbjct: 3 PLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHRE 62
Query: 106 MASVLLSALYADVISPDQIRDGFVILLESXXXXXXXXXXXXXXXXXFVARAVVDDILPPA 165
M S LLS L V+S + F LL+ F+ARAV D IL
Sbjct: 63 MTSKLLSDLCGTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNT 122
Query: 166 FLTRAKKTL 174
++ K T+
Sbjct: 123 YIDSYKGTV 131
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%)
Query: 217 KKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPXXXXXXXX 276
+K + +++EY E GD E +R+L + V A+ LA+E + +
Sbjct: 10 EKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLS 69
Query: 277 XXXXXXXSSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKS 333
S++ + K F +L + L +LALD P A L + A+ +G L +++ S
Sbjct: 70 DLCGTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDS 126
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 520 LLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKK--NDRMLDLLQECFSEGL 577
+++EY G +E + +RDL + V A+ +A+E K + M L +
Sbjct: 16 IIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTV 75
Query: 578 ITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLLPAF 625
++T + K F ++ L +LALD P A + ++ A G L +
Sbjct: 76 MSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTY 123
>pdb|2RG8|A Chain A, Crystal Structure Of Programmed For Cell Death 4 Middle
Ma3 Domain
pdb|2RG8|B Chain B, Crystal Structure Of Programmed For Cell Death 4 Middle
Ma3 Domain
Length = 165
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 3/161 (1%)
Query: 348 KRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASV 407
+ +++ + II EYF D E+ L DL E ++LA++ K +E S
Sbjct: 7 RAFEKTLTPIIQEYFEHGDTNEVAEXLRDLNLGEXKSGVPVLAVSLALEGKASHREXTSK 66
Query: 408 LLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEE 467
LLS L + ST D+ F LL+ + ALD A + F+ARAV D +L ++
Sbjct: 67 LLSDLCGTVXSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYID- 125
Query: 468 ISSKLPPNC-SGSETVRVARSLIAARHAGERLLRCWGGGTG 507
S K +C + A L++ G+R WG G G
Sbjct: 126 -SYKGTVDCVQARAALDKATVLLSXSKGGKRKDSVWGSGGG 165
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 56/129 (43%), Gaps = 2/129 (1%)
Query: 48 PLDD--YKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKE 105
PLD+ ++K + II+EYF GD A LR+L E VS+A++ +E
Sbjct: 3 PLDERAFEKTLTPIIQEYFEHGDTNEVAEXLRDLNLGEXKSGVPVLAVSLALEGKASHRE 62
Query: 106 MASVLLSALYADVISPDQIRDGFVILLESXXXXXXXXXXXXXXXXXFVARAVVDDILPPA 165
S LLS L V S + F LL+ F+ARAV D IL
Sbjct: 63 XTSKLLSDLCGTVXSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNT 122
Query: 166 FLTRAKKTL 174
++ K T+
Sbjct: 123 YIDSYKGTV 131
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%)
Query: 217 KKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPXXXXXXXX 276
+K + +++EY E GD E +R+L + V A+ LA+E + +
Sbjct: 10 EKTLTPIIQEYFEHGDTNEVAEXLRDLNLGEXKSGVPVLAVSLALEGKASHREXTSKLLS 69
Query: 277 XXXXXXXSSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKS 333
S++ + K F +L + L +LALD P A L + A+ +G L +++ S
Sbjct: 70 DLCGTVXSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDS 126
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 517 IMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKK---NDRMLDLLQECF 573
+ +++EY G +E + +RDL + V A+ +A+E K + LL +
Sbjct: 13 LTPIIQEYFEHGDTNEVAEXLRDLNLGEXKSGVPVLAVSLALEGKASHREXTSKLLSDLC 72
Query: 574 SEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLLPAF 625
+ +T + K F ++ L +LALD P A + ++ A G L +
Sbjct: 73 GT-VXSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTY 123
>pdb|3L6A|A Chain A, Crystal Structure Of The C-Terminal Region Of Human P97
Length = 364
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 69/117 (58%), Gaps = 6/117 (5%)
Query: 351 KEEVV----TIIHEYFLSDDIPELIRSLEDLGAPE-FNPIFLKKVITLAMDRKNREKEMA 405
KEE++ T++ EY S + E + + ++ AP+ F P L KVI L++DR + +KE A
Sbjct: 8 KEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKA 67
Query: 406 SVLLSALHIE-IFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLA 461
S L+S L E I ++++ + F+ +L+ +DI + LA F ARA+I ++++
Sbjct: 68 SSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVS 124
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 54 KAVASIIEEYFSTGDVEVAASDLREL-GSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLS 112
K +++ EY ++G+ A + +RE+ + P + +++ +++DR D++KE AS L+S
Sbjct: 13 KLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLIS 72
Query: 113 ALYAD-VISPDQIRDGFVILLESXXXXXXXXXXXXXXXXXFVARAVVDDIL 162
L + + + D F+ +L+ F ARA++ +++
Sbjct: 73 LLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELV 123
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 56/104 (53%), Gaps = 14/104 (13%)
Query: 513 AKDKIMKLLE----EYESGGVVSEACQCIRDLGMP-FFNHEVVKKALVMAMEK------K 561
+K++++KL E EY + G +EA +R++ P F E++ K +++++++ K
Sbjct: 7 SKEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEK 66
Query: 562 NDRMLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAK 605
++ LL++ EG+ T++ + F + D L +DIP K
Sbjct: 67 ASSLISLLKQ---EGIATSDNFMQAFLNVLDQCPKLEVDIPLVK 107
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 214 EEVKKKIADLLREYVESGDAFEACRCIREL-GVSFFHHEVVKRALVLAME 262
EE+ K ++ EY+ SG+A EA +RE+ F E++ + ++L+++
Sbjct: 9 EELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLD 58
>pdb|1UG3|A Chain A, C-Terminal Portion Of Human Eif4gi
pdb|1UG3|B Chain B, C-Terminal Portion Of Human Eif4gi
Length = 339
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 357 IIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKE-MASVLLSALHIE 415
II EY +D+ E ++ +++L +P IF++ + ++R +E M +L L
Sbjct: 17 IIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAG 76
Query: 416 IFSTEDIVNGFVMLLESAEDTALDI 440
ST G +LE AED +DI
Sbjct: 77 HLSTAQYYQGLYEILELAEDMEIDI 101
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Query: 211 ITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRT-AEPX 269
++ EE++KK ++ EY+ D EA +C++EL V+ + +E A
Sbjct: 5 LSEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREH 64
Query: 270 XXXXXXXXXXXXXXSSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEG 324
S++Q +G + E +D+ +DIP +V + EG
Sbjct: 65 MGQLLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEG 119
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 50 DDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKE-MAS 108
++ +K +IIEEY D++ A ++EL S F++ V ++R +E M
Sbjct: 8 EELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQ 67
Query: 109 VLLSALYADVISPDQIRDGFVILLE 133
+L L A +S Q G +LE
Sbjct: 68 LLHQLLCAGHLSTAQYYQGLYEILE 92
>pdb|3TML|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
pdb|3TML|B Chain B, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
pdb|3TML|C Chain C, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
pdb|3TML|D Chain D, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
Length = 288
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 20/113 (17%)
Query: 156 AVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEE 215
+VVD + PAFL R + A ++ + + + +L APH ++
Sbjct: 106 SVVDVLQTPAFLCRQTDFIHACARSGKPVNIKKGQFL-APHD---------------MKN 149
Query: 216 VKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEP 268
V K D RE S D F AC E GVSF ++ +V LA+ T P
Sbjct: 150 VIDKARDAAREAGLSEDRFMAC----ERGVSFGYNNLVSDMRSLAIMRETNAP 198
>pdb|3T4C|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
pdb|3T4C|B Chain B, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
pdb|3T4C|C Chain C, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
pdb|3T4C|D Chain D, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Ambifaria
Length = 288
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 20/113 (17%)
Query: 156 AVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEE 215
+VVD + PAFL R + A ++ + + + +L APH ++
Sbjct: 106 SVVDVLQTPAFLCRQTDFIHACARSGKPVNIKKGQFL-APHD---------------MKN 149
Query: 216 VKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEP 268
V K + RE S D F AC E GVSF ++ +V LA+ T+ P
Sbjct: 150 VIDKAREAAREAGLSEDRFMAC----ERGVSFGYNNLVSDMRSLAIMRETSAP 198
>pdb|1O60|A Chain A, Crystal Structure Of Kdo-8-Phosphate Synthase
pdb|1O60|B Chain B, Crystal Structure Of Kdo-8-Phosphate Synthase
pdb|1O60|C Chain C, Crystal Structure Of Kdo-8-Phosphate Synthase
pdb|1O60|D Chain D, Crystal Structure Of Kdo-8-Phosphate Synthase
Length = 292
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 157 VVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVER 203
VVD I PAFL R + A +K VI + +LS +VE+
Sbjct: 108 VVDIIQLPAFLARQTDLVEAXAKTGAVINVKKPQFLSPSQXGNIVEK 154
>pdb|1OR7|A Chain A, Crystal Structure Of Escherichia Coli Sigmae With The
Cytoplasmic Domain Of Its Anti-Sigma Rsea
pdb|1OR7|B Chain B, Crystal Structure Of Escherichia Coli Sigmae With The
Cytoplasmic Domain Of Its Anti-Sigma Rsea
Length = 194
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 5/39 (12%)
Query: 339 RVQQEDEK-----VKRYKEEVVTIIHEYFLSDDIPELIR 372
RVQ+ D+K V RY+ +V +++ Y S D+P++++
Sbjct: 16 RVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQ 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,453,561
Number of Sequences: 62578
Number of extensions: 692122
Number of successful extensions: 2196
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2082
Number of HSP's gapped (non-prelim): 66
length of query: 640
length of database: 14,973,337
effective HSP length: 105
effective length of query: 535
effective length of database: 8,402,647
effective search space: 4495416145
effective search space used: 4495416145
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)