Query 006556
Match_columns 640
No_of_seqs 301 out of 554
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 11:08:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0403 Neoplastic transformat 100.0 3E-150 6E-155 1176.9 54.6 617 3-630 7-639 (645)
2 KOG0403 Neoplastic transformat 100.0 3E-72 6.5E-77 588.9 29.3 337 3-340 292-632 (645)
3 PF02847 MA3: MA3 domain; Int 99.9 2.8E-23 6E-28 187.7 11.5 112 216-327 1-113 (113)
4 smart00544 MA3 Domain in DAP-5 99.9 5.4E-23 1.2E-27 186.1 13.2 112 216-327 1-113 (113)
5 PF02847 MA3: MA3 domain; Int 99.9 5.3E-23 1.2E-27 185.8 13.0 112 52-163 1-113 (113)
6 smart00544 MA3 Domain in DAP-5 99.9 1E-22 2.2E-27 184.3 13.2 112 52-163 1-113 (113)
7 KOG0401 Translation initiation 99.2 7.5E-11 1.6E-15 141.4 10.3 156 210-365 769-936 (970)
8 KOG0401 Translation initiation 99.1 3.4E-10 7.4E-15 135.8 10.2 161 46-208 769-932 (970)
9 PLN03218 maturation of RBCL 1; 97.7 0.091 2E-06 64.9 34.3 68 517-584 850-918 (1060)
10 PLN03218 maturation of RBCL 1; 96.9 0.99 2.2E-05 56.1 31.7 319 220-580 440-788 (1060)
11 PLN03077 Protein ECB2; Provisi 96.7 2.5 5.5E-05 51.1 35.8 28 354-381 427-454 (857)
12 PLN03077 Protein ECB2; Provisi 96.3 4 8.6E-05 49.5 34.9 142 219-378 224-381 (857)
13 PLN03081 pentatricopeptide (PP 95.4 6.9 0.00015 46.3 27.0 319 219-574 89-454 (697)
14 PLN03081 pentatricopeptide (PP 92.4 29 0.00062 41.1 35.0 183 221-414 263-454 (697)
15 PF04286 DUF445: Protein of un 83.0 70 0.0015 34.2 22.0 143 142-295 35-191 (367)
16 KOG3973 Uncharacterized conser 69.9 32 0.00069 37.4 9.8 188 131-364 8-217 (465)
17 KOG2066 Vacuolar assembly/sort 67.4 1.9E+02 0.0042 34.9 16.2 241 48-319 449-745 (846)
18 KOG2066 Vacuolar assembly/sort 66.9 2.9E+02 0.0064 33.4 19.0 95 220-319 458-552 (846)
19 PF04774 HABP4_PAI-RBP1: Hyalu 64.5 8.9 0.00019 34.2 4.0 17 2-18 18-34 (106)
20 PF04844 Ovate: Transcriptiona 54.7 24 0.00052 28.7 4.4 45 212-256 4-50 (59)
21 PLN02591 tryptophan synthase 53.1 47 0.001 34.7 7.5 90 536-627 31-139 (250)
22 PRK13111 trpA tryptophan synth 48.4 52 0.0011 34.5 7.0 88 538-627 43-150 (258)
23 TIGR02698 CopY_TcrY copper tra 48.2 1.4E+02 0.003 27.8 9.2 87 271-374 7-96 (130)
24 PF04844 Ovate: Transcriptiona 47.0 52 0.0011 26.8 5.2 47 48-94 4-52 (59)
25 PF02854 MIF4G: MIF4G domain; 46.7 1.3E+02 0.0029 28.7 9.3 115 54-170 2-127 (209)
26 TIGR01568 A_thal_3678 uncharac 41.8 79 0.0017 26.4 5.6 44 212-255 10-56 (66)
27 PF04286 DUF445: Protein of un 40.4 4.8E+02 0.01 27.7 19.4 133 306-457 35-174 (367)
28 TIGR01446 DnaD_dom DnaD and ph 38.6 1.1E+02 0.0024 25.0 6.3 41 249-289 31-72 (73)
29 PF05044 HPD: Homeo-prospero d 37.7 1.1E+02 0.0023 29.5 6.4 69 283-363 38-117 (158)
30 PF12854 PPR_1: PPR repeat 35.9 52 0.0011 23.1 3.3 24 220-243 10-33 (34)
31 KOG1943 Beta-tubulin folding c 35.1 6.3E+02 0.014 31.9 13.8 160 214-414 694-881 (1133)
32 PF06992 Phage_lambda_P: Repli 35.0 3.3E+02 0.0072 28.3 10.1 65 271-356 68-132 (233)
33 PRK09498 sifA secreted effecto 34.4 73 0.0016 33.9 5.3 46 218-278 28-73 (336)
34 PF09851 SHOCT: Short C-termin 34.3 79 0.0017 22.1 3.9 26 271-296 5-30 (31)
35 PF12854 PPR_1: PPR repeat 33.4 58 0.0013 22.9 3.2 24 517-540 10-33 (34)
36 PF08876 DUF1836: Domain of un 33.0 44 0.00095 30.3 3.1 62 251-312 42-104 (105)
37 KOG2562 Protein phosphatase 2 32.7 8.1E+02 0.017 28.1 13.8 281 86-370 155-480 (493)
38 KOG2243 Ca2+ release channel ( 32.6 57 0.0012 41.3 4.7 86 265-365 2901-2996(5019)
39 KOG1831 Negative regulator of 32.1 8.5E+02 0.018 31.7 14.4 184 403-590 903-1127(1591)
40 PF02854 MIF4G: MIF4G domain; 31.9 3.2E+02 0.0069 26.0 9.3 117 352-470 2-129 (209)
41 TIGR01568 A_thal_3678 uncharac 31.2 2E+02 0.0044 24.0 6.4 48 47-94 9-59 (66)
42 KOG2140 Uncharacterized conser 30.3 4.6E+02 0.0099 30.6 10.9 118 48-172 450-569 (739)
43 PF08876 DUF1836: Domain of un 29.9 36 0.00077 30.9 2.0 61 548-608 42-105 (105)
44 PF07149 Pes-10: Pes-10; Inte 29.5 3.9E+02 0.0085 29.6 10.0 94 56-153 212-312 (370)
45 COG0177 Nth Predicted EndoIII- 29.1 4.6E+02 0.01 26.8 10.0 90 153-261 92-188 (211)
46 TIGR01446 DnaD_dom DnaD and ph 28.5 1.6E+02 0.0034 24.1 5.6 51 531-584 19-72 (73)
47 PF10265 DUF2217: Uncharacteri 28.4 1.4E+02 0.0031 34.4 6.8 103 529-631 264-417 (514)
48 TIGR00756 PPR pentatricopeptid 28.3 83 0.0018 20.7 3.3 24 221-244 4-27 (35)
49 KOG1924 RhoA GTPase effector D 28.2 3.8E+02 0.0082 32.7 10.1 170 436-613 110-294 (1102)
50 PF01535 PPR: PPR repeat; Int 27.6 79 0.0017 20.5 3.0 24 221-244 4-27 (31)
51 PF11867 DUF3387: Domain of un 25.7 5E+02 0.011 28.1 10.3 25 211-235 117-141 (335)
52 PLN02591 tryptophan synthase 25.7 2.1E+02 0.0045 29.9 7.1 89 241-331 33-138 (250)
53 smart00543 MIF4G Middle domain 25.6 4.5E+02 0.0097 25.1 9.1 28 144-171 94-121 (200)
54 KOG2141 Protein involved in hi 24.9 5.1E+02 0.011 31.3 10.4 157 362-526 629-791 (822)
55 PF12755 Vac14_Fab1_bd: Vacuol 24.7 4E+02 0.0087 23.6 7.7 76 81-158 21-96 (97)
56 cd07347 harmonin_N_like N-term 24.5 1.5E+02 0.0033 25.5 4.8 37 47-84 16-53 (78)
57 PF13311 DUF4080: Protein of u 24.1 5.3E+02 0.011 25.6 9.3 71 44-114 19-93 (190)
58 KOG1104 Nuclear cap-binding co 23.9 1.4E+03 0.03 27.9 15.5 187 29-225 5-241 (759)
59 PRK13111 trpA tryptophan synth 23.3 2.2E+02 0.0048 29.8 6.7 100 226-327 16-145 (258)
60 PF12295 Symplekin_C: Sympleki 22.5 3.8E+02 0.0082 26.6 7.9 84 54-137 74-161 (183)
61 PRK15372 pathogenicity island 22.4 1.4E+02 0.0031 31.2 4.9 25 222-246 5-29 (292)
62 PF12755 Vac14_Fab1_bd: Vacuol 20.6 4.6E+02 0.0099 23.2 7.3 75 379-455 21-95 (97)
63 PRK10747 putative protoheme IX 20.4 1.1E+03 0.025 25.7 15.9 74 60-135 160-239 (398)
64 COG0593 DnaA ATPase involved i 20.3 7.5E+02 0.016 27.9 10.4 125 86-226 265-395 (408)
65 cd08307 Death_Pelle Death doma 20.1 1.9E+02 0.004 26.0 4.6 44 495-547 53-96 (97)
No 1
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-150 Score=1176.87 Aligned_cols=617 Identities=73% Similarity=1.067 Sum_probs=594.3
Q ss_pred ccCcccccccCcccccCCCCCCCCCCCCCCCCCCCccccccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCC
Q 006556 3 IDGAGGKGTWGKLLDTDVESHIDRNDPNYDSGEEPYQLVGATISDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSS 82 (640)
Q Consensus 3 ~~G~ggk~~wg~~~~~~~~~~~d~~DPnyds~~~~~~~~~~~~~~s~ee~~k~~~~il~EYf~~~D~~Ea~~~l~eL~~p 82 (640)
+-|+|||||||...+ |.||||||+.|++|.++.+++.-..++|+|++.+||+|||++||+.-|+..++||...
T Consensus 7 ~~~~g~~~~wg~~~d-------~d~dp~~dtge~~~~lv~s~~~~pl~dykk~~~sii~eyfstgdv~vaa~dl~elg~s 79 (645)
T KOG0403|consen 7 KKGEGSKGTWGVLDD-------DDNDPNYDTGEEPYHLVGSPVSDPLSDYKKKAVSIIDEYFSTGDVVVAASDLKELGSS 79 (645)
T ss_pred ccccCCCCccccccC-------CCCCCCCCCCCCcccccCCccCCcHHHHHHHHHHHHHHHccCCCchhhHHHHHHhccc
Confidence 578999999997766 4499999999999999999998899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHhcCCC
Q 006556 83 EYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDDIL 162 (640)
Q Consensus 83 ~~~~~~v~~~i~~aLdr~~~eREl~s~LLs~L~~~~ls~~~i~~Gf~~lL~~l~Dl~lDiP~a~~~la~fiAraV~d~~l 162 (640)
+||++||+++|++||||+++|+||+|.|||.||..+++|+|+..||.++|++.+|+.+|||+|...||-||||||+|++|
T Consensus 80 eyhpyfvkrlvsmamdrhdkekemasvlls~lyadvi~p~qir~gf~~ll~s~ddl~vdipdavnvlalfiaraivddil 159 (645)
T KOG0403|consen 80 EYHPYFVKRLVSMAMDRHDKEKEMASVLLSALYADVIDPDQIRDGFIRLLESADDLAVDIPDAVNVLALFIARAIVDDIL 159 (645)
T ss_pred cccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhcccceecCchHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhhcCCCCchHHHHHHHHHhhcccCCCchhHHhhhhcCCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006556 163 PPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVESGDAFEACRCIRE 242 (640)
Q Consensus 163 ~~~~l~~~~~~~~~~~~g~~~l~~a~~~lLs~~~~~~rl~~~Wgg~~~~~~~el~~ki~~lL~EY~~s~D~~EA~~cl~E 242 (640)
||.|+.+.+..+|.+++|.++++.|++++|++||+.+-++..|||.+.++++|+|+||+.+++||..+||..||+||+|+
T Consensus 160 pp~fl~r~~k~lp~~skg~qV~~~aeksylsap~hae~ve~~wGg~~n~t~EEvK~kIn~~l~eyv~~getrea~rciR~ 239 (645)
T KOG0403|consen 160 PPAFLKRAKKLLPDSSKGFQVINTAEKSYLSAPHHAELVELFWGGETNATVEEVKNKINGNLIEYVEIGETREACRCIRE 239 (645)
T ss_pred ChHHHHHHHhhCCCcccchhHHHHHHhhccCCCchhhHHHhhhCCCccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHh
Q 006556 243 LGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAIS 322 (640)
Q Consensus 243 L~~p~fhhe~V~~ai~~alE~~~~~~~v~~LL~~L~~~~~is~~q~~~Gf~rv~e~ldDi~lDvP~A~~~l~~~v~~~~~ 322 (640)
|.+|+|||+.|+++++++||....+..+++||+.-...|++|++||.+||.|+.++++|+++|+|.|...++.++.++..
T Consensus 240 L~vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~~~slddl~ldiP~a~~~~esiv~Ka~s 319 (645)
T KOG0403|consen 240 LGVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRKGGSLDDLVLDIPSARYDFESIVPKAPS 319 (645)
T ss_pred hCCCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhhccccccccccCcchhhhhhhhcccCCC
Confidence 99999999999999999999876677899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhhh-hhccCCcccCcchhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChhh
Q 006556 323 EGWLDASFMK-SLGEDGRVQQEDEKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNRE 401 (640)
Q Consensus 323 ~g~l~~~~~~-~~~~~~~~~~~~~~~ee~~k~~~~il~EYf~~~D~~E~~~~l~el~~p~~~~~~v~~~i~~aldr~~~e 401 (640)
.||+..+..+ .....|+ ......|+|.+.+||+|||.|||+.|++++|++||.|++++.|++++|++|||||++|
T Consensus 320 ~gwl~e~s~k~~s~~~g~----~e~~r~Fkk~~~~IIqEYFlsgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~e 395 (645)
T KOG0403|consen 320 GGWLDENSFKETSVLPGD----SENLRAFKKDLTPIIQEYFLSGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSE 395 (645)
T ss_pred CCccchhhhcccccCCCc----chHHHHHHHhhHHHHHHHHhcCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhH
Confidence 9999955444 3444443 3448999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHhhhhhhhhchhchHHHHHHHHHHHHHhccCCchhhhHhhccCCCCCcHHHH
Q 006556 402 KEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSET 481 (640)
Q Consensus 402 REl~s~LLs~L~~~~ls~~~i~~gf~~lL~~l~Dl~lDiP~a~~~la~fiARaV~dd~l~~~~l~~~~~~~~~~~~g~~~ 481 (640)
|||+|+|||+|+.+++|++|+.+||.+||++++|+.+|+|+|++.||.||||||.|++|.|.+|.++.+++|..++|+++
T Consensus 396 kEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et 475 (645)
T KOG0403|consen 396 KEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRET 475 (645)
T ss_pred HHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccccccHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred HHHHHHHHhcccccccccceecCC-CCcchHHHHHHHHHHHHHHHhccCHHHHHHHHHhhCCCCcchHHHHHHHHHHhcc
Q 006556 482 VRVARSLIAARHAGERLLRCWGGG-TGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEK 560 (640)
Q Consensus 482 l~~a~~~L~~~h~~~rl~~~Wg~~-~g~~~~~~k~ki~~ll~EY~~s~D~~EA~~cv~eL~~p~fhhelV~~ai~~alE~ 560 (640)
+++|+++|+++|+++|++||||+| +||+|+++|+||.+||+||.++||+.|||+||+||+|||||||+||+|++|+||+
T Consensus 476 ~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEk 555 (645)
T KOG0403|consen 476 LDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEK 555 (645)
T ss_pred HHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHh
Confidence 999999999999999999999988 6899999999999999999999999999999999999999999999999999999
Q ss_pred Cch--HHHHHHHHHHHcCCCCHHHHHhHHHHHhhccchhhccccchHHHHHHHHHHHHHcC------------CCCCccc
Q 006556 561 KND--RMLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKG------------WLLPAFG 626 (640)
Q Consensus 561 ~~~--~~~~LL~~l~~~~~vs~~q~~~Gf~rv~~~l~Di~lDvP~A~~~l~~~v~~~~~~g------------~l~~~~~ 626 (640)
+++ +|++||+.|+++|+||.+||++||.||++.|+||+||||+|++.|++||+.|.++| |+...|.
T Consensus 556 k~d~t~~ldLLk~cf~sglIT~nQMtkGf~RV~dsl~DlsLDvPna~ekf~~~Ve~~~~~G~i~~~l~~~~~s~l~~~F~ 635 (645)
T KOG0403|consen 556 KGDSTMILDLLKECFKSGLITTNQMTKGFERVYDSLPDLSLDVPNAYEKFERYVEECFQNGIISKQLRDLCPSRLRKRFV 635 (645)
T ss_pred cCcHHHHHHHHHHHHhcCceeHHHhhhhhhhhhccCcccccCCCcHHHHHHHHHHHHHHcCchhHHhhhcchhhhccccc
Confidence 987 89999999999999999999999999999999999999999999999999999999 6666666
Q ss_pred cCcc
Q 006556 627 SCVA 630 (640)
Q Consensus 627 ~~~~ 630 (640)
..+.
T Consensus 636 se~~ 639 (645)
T KOG0403|consen 636 SEGD 639 (645)
T ss_pred cCCC
Confidence 5443
No 2
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=100.00 E-value=3e-72 Score=588.94 Aligned_cols=337 Identities=42% Similarity=0.608 Sum_probs=316.8
Q ss_pred ccCcccccccCcccccCCCCCCCCCCCCCCCCCCCccccccCCC---CCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 006556 3 IDGAGGKGTWGKLLDTDVESHIDRNDPNYDSGEEPYQLVGATIS---DPLDDYKKAVASIIEEYFSTGDVEVAASDLREL 79 (640)
Q Consensus 3 ~~G~ggk~~wg~~~~~~~~~~~d~~DPnyds~~~~~~~~~~~~~---~s~ee~~k~~~~il~EYf~~~D~~Ea~~~l~eL 79 (640)
+||++|++.|+-|.--..-..+++++|||+-.++++....+.-+ .....|+|+.++||+|||.|||+.|+++|+++|
T Consensus 292 ~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~~IIqEYFlsgDt~Evi~~L~DL 371 (645)
T KOG0403|consen 292 KGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDLTPIIQEYFLSGDTPEVIRSLRDL 371 (645)
T ss_pred hccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhhHHHHHHHHhcCChHHHHHHHHHc
Confidence 68999999999887655567789999999987666544333222 337889999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHhc
Q 006556 80 GSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVD 159 (640)
Q Consensus 80 ~~p~~~~~~v~~~i~~aLdr~~~eREl~s~LLs~L~~~~ls~~~i~~Gf~~lL~~l~Dl~lDiP~a~~~la~fiAraV~d 159 (640)
|.|+|++.|++.+|+.|||||++||||+|+|||.|+..++|++|+.+||.+||++++|+.+|+|.|++-+|.|+||||.|
T Consensus 372 n~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a~~elalFlARAViD 451 (645)
T KOG0403|consen 372 NLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRASQELALFLARAVID 451 (645)
T ss_pred CCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccccccHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhhhhhcCCCCchHHHHHHHHHhhcccCCCchhHHhhhhcCC-CCCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 006556 160 DILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGS-THITVEEVKKKIADLLREYVESGDAFEACR 238 (640)
Q Consensus 160 ~~l~~~~l~~~~~~~~~~~~g~~~l~~a~~~lLs~~~~~~rl~~~Wgg~-~~~~~~el~~ki~~lL~EY~~s~D~~EA~~ 238 (640)
|+|.|.++....+.+|..+.|++++++|. +||++.|+.+|+.++|||| ++++++++++||.+||+||.++||+.||++
T Consensus 452 dVLap~~leei~~~lp~~s~g~et~~~Ar-sLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeEY~~~GdisEA~~ 530 (645)
T KOG0403|consen 452 DVLAPTNLEEISGTLPPVSQGRETLDKAR-SLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEEYELSGDISEACH 530 (645)
T ss_pred cccccCcHHHHcCCCCCchhhHHHHHHHH-HHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 99999999999999999999999999995 9999999999999999966 899999999999999999999999999999
Q ss_pred HHHHhCCCcchHHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhccccccccccchHHHHHHHHH
Q 006556 239 CIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVP 318 (640)
Q Consensus 239 cl~EL~~p~fhhe~V~~ai~~alE~~~~~~~v~~LL~~L~~~~~is~~q~~~Gf~rv~e~ldDi~lDvP~A~~~l~~~v~ 318 (640)
||+||++||||||+||+|++|+||++.+..++++||+.|+++|+||.+||.+||+||.++|+|++||||+|++.|..+|.
T Consensus 531 CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~RV~dsl~DlsLDvPna~ekf~~~Ve 610 (645)
T KOG0403|consen 531 CIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFERVYDSLPDLSLDVPNAYEKFERYVE 610 (645)
T ss_pred HHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhhhhccCcccccCCCcHHHHHHHHHH
Confidence 99999999999999999999999998777799999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCChhhhhhhccCCcc
Q 006556 319 VAISEGWLDASFMKSLGEDGRV 340 (640)
Q Consensus 319 ~~~~~g~l~~~~~~~~~~~~~~ 340 (640)
.|.+.|+|...+..-+|+.+|+
T Consensus 611 ~~~~~G~i~~~l~~~~~s~l~~ 632 (645)
T KOG0403|consen 611 ECFQNGIISKQLRDLCPSRLRK 632 (645)
T ss_pred HHHHcCchhHHhhhcchhhhcc
Confidence 9999999988877777887776
No 3
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=99.89 E-value=2.8e-23 Score=187.66 Aligned_cols=112 Identities=41% Similarity=0.589 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhccC-CchHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 006556 216 VKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIR-TAEPLILKLLKEAAEEGLISSSQMAKGFAR 294 (640)
Q Consensus 216 l~~ki~~lL~EY~~s~D~~EA~~cl~EL~~p~fhhe~V~~ai~~alE~~-~~~~~v~~LL~~L~~~~~is~~q~~~Gf~r 294 (640)
++++++++|+||++++|.+||++||+||+.|.+||+||+.+|..++|++ ..++.++.||.+|.+++++|++|+.+||.+
T Consensus 1 ~rk~i~~~l~ey~~~~d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~ 80 (113)
T PF02847_consen 1 LRKKIFSILMEYFSSGDVDEAVECLKELKLPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFED 80 (113)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999995 788999999999999999999999999999
Q ss_pred HhhccccccccccchHHHHHHHHHHHHhcCCCC
Q 006556 295 LEESLDDLALDIPSARNLFQSIVPVAISEGWLD 327 (640)
Q Consensus 295 v~e~ldDi~lDvP~A~~~l~~~v~~~~~~g~l~ 327 (640)
+++.++|+.+|+|++|+++++|+++++.+|+||
T Consensus 81 ~l~~l~Dl~~D~P~~~~~la~~~~~~i~~~~lp 113 (113)
T PF02847_consen 81 LLESLEDLELDIPKAPEYLAKFLARLIADGILP 113 (113)
T ss_dssp HHHHHHHHHHHSTTHHHHHHHHHHHHHHTTSS-
T ss_pred HHhHhhhccccchHHHHHHHHHHHHHHHcCCcC
Confidence 999999999999999999999999999999986
No 4
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=99.89 E-value=5.4e-23 Score=186.06 Aligned_cols=112 Identities=42% Similarity=0.573 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhccC-CchHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 006556 216 VKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIR-TAEPLILKLLKEAAEEGLISSSQMAKGFAR 294 (640)
Q Consensus 216 l~~ki~~lL~EY~~s~D~~EA~~cl~EL~~p~fhhe~V~~ai~~alE~~-~~~~~v~~LL~~L~~~~~is~~q~~~Gf~r 294 (640)
+++++..+|+||++++|.+||++||++|++|+|||++|+.+|..++|++ ..++.++.||.+|.+++.++++||.+||.+
T Consensus 1 ~~k~i~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~ 80 (113)
T smart00544 1 LKKKIFLIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWR 80 (113)
T ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999986 788999999999999999999999999999
Q ss_pred HhhccccccccccchHHHHHHHHHHHHhcCCCC
Q 006556 295 LEESLDDLALDIPSARNLFQSIVPVAISEGWLD 327 (640)
Q Consensus 295 v~e~ldDi~lDvP~A~~~l~~~v~~~~~~g~l~ 327 (640)
+++.++|+.+|+|+|+.++++|+++++.+|++|
T Consensus 81 ~~~~l~dl~~D~P~a~~~la~~~a~~v~~~~l~ 113 (113)
T smart00544 81 LLEDIEDLELDIPNAWRNLAEFVARLISDGILP 113 (113)
T ss_pred HHhhChhhhcccccHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999986
No 5
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=99.89 E-value=5.3e-23 Score=185.82 Aligned_cols=112 Identities=41% Similarity=0.592 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChhHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Q 006556 52 YKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYA-DVISPDQIRDGFVI 130 (640)
Q Consensus 52 ~~k~~~~il~EYf~~~D~~Ea~~~l~eL~~p~~~~~~v~~~i~~aLdr~~~eREl~s~LLs~L~~-~~ls~~~i~~Gf~~ 130 (640)
|+|++..+|.|||+++|.+||+.||++|+.|.+++.||..+|+.+||+++.+|++++.|++.|+. +.+++++|.+||..
T Consensus 1 ~rk~i~~~l~ey~~~~d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~ 80 (113)
T PF02847_consen 1 LRKKIFSILMEYFSSGDVDEAVECLKELKLPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFED 80 (113)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999997 99999999999999
Q ss_pred HHhhhhhhhcchhhHHHHHHHHHHHHHhcCCCC
Q 006556 131 LLESADDLAVDILDAVDILALFVARAVVDDILP 163 (640)
Q Consensus 131 lL~~l~Dl~lDiP~a~~~la~fiAraV~d~~l~ 163 (640)
++++++|+.+|+|++|+++|+|++|+|.+|+||
T Consensus 81 ~l~~l~Dl~~D~P~~~~~la~~~~~~i~~~~lp 113 (113)
T PF02847_consen 81 LLESLEDLELDIPKAPEYLAKFLARLIADGILP 113 (113)
T ss_dssp HHHHHHHHHHHSTTHHHHHHHHHHHHHHTTSS-
T ss_pred HHhHhhhccccchHHHHHHHHHHHHHHHcCCcC
Confidence 999999999999999999999999999999997
No 6
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=99.89 E-value=1e-22 Score=184.28 Aligned_cols=112 Identities=46% Similarity=0.586 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChhHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Q 006556 52 YKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYA-DVISPDQIRDGFVI 130 (640)
Q Consensus 52 ~~k~~~~il~EYf~~~D~~Ea~~~l~eL~~p~~~~~~v~~~i~~aLdr~~~eREl~s~LLs~L~~-~~ls~~~i~~Gf~~ 130 (640)
++|++..+|+|||+++|.+||++||++|+.|.+++.+|..+|+.+||+++++|+++++|++.|++ +.+++++|.+||..
T Consensus 1 ~~k~i~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~ 80 (113)
T smart00544 1 LKKKIFLIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWR 80 (113)
T ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999997 99999999999999
Q ss_pred HHhhhhhhhcchhhHHHHHHHHHHHHHhcCCCC
Q 006556 131 LLESADDLAVDILDAVDILALFVARAVVDDILP 163 (640)
Q Consensus 131 lL~~l~Dl~lDiP~a~~~la~fiAraV~d~~l~ 163 (640)
+++.++|+++|+|++++++|.|+||+|.+|++|
T Consensus 81 ~~~~l~dl~~D~P~a~~~la~~~a~~v~~~~l~ 113 (113)
T smart00544 81 LLEDIEDLELDIPNAWRNLAEFVARLISDGILP 113 (113)
T ss_pred HHhhChhhhcccccHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999987
No 7
>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=7.5e-11 Score=141.42 Aligned_cols=156 Identities=24% Similarity=0.289 Sum_probs=132.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhccC-CchHHHHHHHHHHHHcCCCCHHHH
Q 006556 210 HITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIR-TAEPLILKLLKEAAEEGLISSSQM 288 (640)
Q Consensus 210 ~~~~~el~~ki~~lL~EY~~s~D~~EA~~cl~EL~~p~fhhe~V~~ai~~alE~~-~~~~~v~~LL~~L~~~~~is~~q~ 288 (640)
..+.+++..++++|++||++.++.+||..|+++|+.|.+|+++|...|...+++. ..++.+++||..|+..+.++.+++
T Consensus 769 ~~~~~~l~~~sk~l~ee~~~~~~~~~~~~~ie~l~S~~~~~~~v~~~v~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 848 (970)
T KOG0401|consen 769 ALSSELLELLSKSLLEEFLSLRLEKEALKCIEELESPSLLLKTVGENIEPTLEKSPQAVEELLQLLDILVSKNPLSIETL 848 (970)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhhHHHHHHhcCcccccChhHHHHHHHHHHHHHhcCcccHHHH
Confidence 4566789999999999999999999999999999999999999999999999988 678899999999999999999999
Q ss_pred HHHHHHHhhccccccccccchHHHHHHHHHHHHhcCCCChh-----hhhhhccCCccc------CcchhHHHHHHHHHHH
Q 006556 289 AKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDAS-----FMKSLGEDGRVQ------QEDEKVKRYKEEVVTI 357 (640)
Q Consensus 289 ~~Gf~rv~e~ldDi~lDvP~A~~~l~~~v~~~~~~g~l~~~-----~~~~~~~~~~~~------~~~~~~ee~~k~~~~i 357 (640)
..||......++|+.+|+|++|.++++|+++.+..|.++.. +.......++.. ......+.+.+.+..+
T Consensus 849 ~~~~~~~~~~~~d~~~d~pk~w~~~~e~~gp~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (970)
T KOG0401|consen 849 EIGYREKFKLADDKELDLPKGWNYIKEFLGPLIHQKILDESELVREILKNMRPNGRRSNVLFSVLEIVEKELGRADLGDI 928 (970)
T ss_pred hhhHHHHHhhhHHHhcccccchhHHHHhhhhHhhhccccHHHHHHHHhhcCCccccccchHHHHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999963 233344444442 2233345566666666
Q ss_pred HHHhhcCC
Q 006556 358 IHEYFLSD 365 (640)
Q Consensus 358 l~EYf~~~ 365 (640)
-++.|.+.
T Consensus 929 ~~~~~~s~ 936 (970)
T KOG0401|consen 929 QRESFLST 936 (970)
T ss_pred HHHhcccc
Confidence 66666654
No 8
>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=3.4e-10 Score=135.82 Aligned_cols=161 Identities=16% Similarity=0.135 Sum_probs=137.3
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChhHHHHHHHHHHHHHh-CCCCHHHH
Q 006556 46 SDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYA-DVISPDQI 124 (640)
Q Consensus 46 ~~s~ee~~k~~~~il~EYf~~~D~~Ea~~~l~eL~~p~~~~~~v~~~i~~aLdr~~~eREl~s~LLs~L~~-~~ls~~~i 124 (640)
..+.+.+..+.+.++.||++..+.++++.|++++++|.+++.+|...|+..++|++..|+..++||..|+. +.++.+++
T Consensus 769 ~~~~~~l~~~sk~l~ee~~~~~~~~~~~~~ie~l~S~~~~~~~v~~~v~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 848 (970)
T KOG0401|consen 769 ALSSELLELLSKSLLEEFLSLRLEKEALKCIEELESPSLLLKTVGENIEPTLEKSPQAVEELLQLLDILVSKNPLSIETL 848 (970)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhhHHHHHHhcCcccccChhHHHHHHHHHHHHHhcCcccHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999997 89999999
Q ss_pred HHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHhcCCCChhhhhhhhhc--CCCCchHHHHHHHHHhhcccCCCchhHHh
Q 006556 125 RDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKT--LPAASKGFQVIQTAEKSYLSAPHHAELVE 202 (640)
Q Consensus 125 ~~Gf~~lL~~l~Dl~lDiP~a~~~la~fiAraV~d~~l~~~~l~~~~~~--~~~~~~g~~~l~~a~~~lLs~~~~~~rl~ 202 (640)
..||...+..++|+.+|+|++|.|+++|+.+.|..+++..+.+.+.... .+.+. +.-.+.-. ..+++...+..++.
T Consensus 849 ~~~~~~~~~~~~d~~~d~pk~w~~~~e~~gp~~~~~~~~~~e~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~ 926 (970)
T KOG0401|consen 849 EIGYREKFKLADDKELDLPKGWNYIKEFLGPLIHQKILDESELVREILKNMRPNGR-RSNVLFSV-LEIVEKELGRADLG 926 (970)
T ss_pred hhhHHHHHhhhHHHhcccccchhHHHHhhhhHhhhccccHHHHHHHHhhcCCcccc-ccchHHHH-HHHHHHhhhHHHHH
Confidence 9999999999999999999999999999999999999999888875443 12211 11122111 12334445778899
Q ss_pred hhhcCC
Q 006556 203 RRWGGS 208 (640)
Q Consensus 203 ~~Wgg~ 208 (640)
.+|++.
T Consensus 927 ~~~~~~ 932 (970)
T KOG0401|consen 927 DIQRES 932 (970)
T ss_pred HHHHHh
Confidence 999843
No 9
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.68 E-value=0.091 Score=64.95 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=54.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHhhCC-CCcchHHHHHHHHHHhccCchHHHHHHHHHHHcCCCCHHHHH
Q 006556 517 IMKLLEEYESGGVVSEACQCIRDLGM-PFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGLITTNQMT 584 (640)
Q Consensus 517 i~~ll~EY~~s~D~~EA~~cv~eL~~-p~fhhelV~~ai~~alE~~~~~~~~LL~~l~~~~~vs~~q~~ 584 (640)
...+|.-+...++..+|...+.+++. |.-.|...+..+....-+..++.+.||..+...|+++.-++.
T Consensus 850 ~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~~ 918 (1060)
T PLN03218 850 LSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFK 918 (1060)
T ss_pred HHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcccc
Confidence 34456666788899999999999984 666778888888888755556789999999999999887653
No 10
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.94 E-value=0.99 Score=56.07 Aligned_cols=319 Identities=13% Similarity=0.126 Sum_probs=161.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCC----CHHHHHHHHHH
Q 006556 220 IADLLREYVESGDAFEACRCIRELGVSFFH-HEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLI----SSSQMAKGFAR 294 (640)
Q Consensus 220 i~~lL~EY~~s~D~~EA~~cl~EL~~p~fh-he~V~~ai~~alE~~~~~~~v~~LL~~L~~~~~i----s~~q~~~Gf~r 294 (640)
...+|+=|...|++++|.+.++++..-.+. ..+++.++..+.-+....+....+|..+.+.|+. |-..+..|+.+
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 345666666677777777666665321111 2345555555554444444556666666655543 22333444333
Q ss_pred HhhccccccccccchHHHH---------------HHHHHHHHhcCCCChh--hhhhhccCCcccCcchhHHHHHHHHHHH
Q 006556 295 LEESLDDLALDIPSARNLF---------------QSIVPVAISEGWLDAS--FMKSLGEDGRVQQEDEKVKRYKEEVVTI 357 (640)
Q Consensus 295 v~e~ldDi~lDvP~A~~~l---------------~~~v~~~~~~g~l~~~--~~~~~~~~~~~~~~~~~~ee~~k~~~~i 357 (640)
.- ++..|.+.+ ..++..+...|-+... +...+...+... .|. .-....+
T Consensus 520 ~G--------~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi--~PD----~vTynaL 585 (1060)
T PLN03218 520 AG--------QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI--DPD----HITVGAL 585 (1060)
T ss_pred Cc--------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC--CCc----HHHHHHH
Confidence 21 112232222 2233333333333311 111111110000 011 1235677
Q ss_pred HHHhhcCCCHHHHHHHHHHcCCCCCchH-HHHHHHHHhhcCChhhHHHHHHHHHHHHhccCChHHHHHHHHHHHhhhhhh
Q 006556 358 IHEYFLSDDIPELIRSLEDLGAPEFNPI-FLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDT 436 (640)
Q Consensus 358 l~EYf~~~D~~E~~~~l~el~~p~~~~~-~v~~~i~~aldr~~~eREl~s~LLs~L~~~~ls~~~i~~gf~~lL~~l~Dl 436 (640)
|.-|...|+.+++...++++......+. .+-..+..++-+. ..-+.+-.++..+...-+.++. ..|..+++.+...
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~-G~~deAl~lf~eM~~~Gv~PD~--~TynsLI~a~~k~ 662 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK-GDWDFALSIYDDMKKKGVKPDE--VFFSALVDVAGHA 662 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhC
Confidence 8889999999999988888765432221 2222333333333 3356677788888766444442 2344444444332
Q ss_pred hhchhchHHHHHHHHHHHHHhccCCchhhh----HhhccCCCCCcHHHHHHHHHHHHhcccccccccceecCCCCcchHH
Q 006556 437 ALDILDASNELALFLARAVIDDVLAPLNLE----EISSKLPPNCSGSETVRVARSLIAARHAGERLLRCWGGGTGWAVED 512 (640)
Q Consensus 437 ~lDiP~a~~~la~fiARaV~dd~l~~~~l~----~~~~~~~~~~~g~~~l~~a~~~L~~~h~~~rl~~~Wg~~~g~~~~~ 512 (640)
- +.-.|.+++..+..+ ++-|-.... ..+... |. +..|..++..-. . +| ...+
T Consensus 663 G-~~eeA~~l~~eM~k~----G~~pd~~tynsLI~ay~k~-----G~--~eeA~~lf~eM~------~-~g----~~Pd- 718 (1060)
T PLN03218 663 G-DLDKAFEILQDARKQ----GIKLGTVSYSSLMGACSNA-----KN--WKKALELYEDIK------S-IK----LRPT- 718 (1060)
T ss_pred C-CHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhC-----CC--HHHHHHHHHHHH------H-cC----CCCC-
Confidence 1 344555555554433 333322222 222211 11 233433333110 0 11 1111
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHhhCCCCcch-HHHHHHHHHHhccCch--HHHHHHHHHHHcCCCCH
Q 006556 513 AKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNH-EVVKKALVMAMEKKND--RMLDLLQECFSEGLITT 580 (640)
Q Consensus 513 ~k~ki~~ll~EY~~s~D~~EA~~cv~eL~~p~fhh-elV~~ai~~alE~~~~--~~~~LL~~l~~~~~vs~ 580 (640)
....+.++.-|...|+.+||.+.++++..-.+.+ ...+..+..+.-+... ....++.++.+.|+-..
T Consensus 719 -vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd 788 (1060)
T PLN03218 719 -VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788 (1060)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 1236789999999999999999999875443433 6677777777776643 56888888888886543
No 11
>PLN03077 Protein ECB2; Provisional
Probab=96.65 E-value=2.5 Score=51.15 Aligned_cols=28 Identities=11% Similarity=0.209 Sum_probs=23.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHcCCCC
Q 006556 354 VVTIIHEYFLSDDIPELIRSLEDLGAPE 381 (640)
Q Consensus 354 ~~~il~EYf~~~D~~E~~~~l~el~~p~ 381 (640)
...+|.-|...|+.+++...++++..++
T Consensus 427 ~n~Li~~y~k~g~~~~A~~vf~~m~~~d 454 (857)
T PLN03077 427 ANALIEMYSKCKCIDKALEVFHNIPEKD 454 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 4567888999999999999999988765
No 12
>PLN03077 Protein ECB2; Provisional
Probab=96.31 E-value=4 Score=49.49 Aligned_cols=142 Identities=13% Similarity=0.078 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCH----HHHHHHHHH
Q 006556 219 KIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISS----SQMAKGFAR 294 (640)
Q Consensus 219 ki~~lL~EY~~s~D~~EA~~cl~EL~~p~fhhe~V~~ai~~alE~~~~~~~v~~LL~~L~~~~~is~----~q~~~Gf~r 294 (640)
-.+.+|.=|...|++++|.+.+.++..|.- +.+.++..+.=+....+....++..+...|+.+. ..+.+|+.+
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~---~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~ 300 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPRRDC---ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL 300 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCCCCc---chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Confidence 357889999999999999999999977643 5567777666655444556788888888876433 344444443
Q ss_pred HhhccccccccccchHHHHHHHHHHHHhcCCCChhhh-----hhhccCCcccCcchhHHHHH-------HHHHHHHHHhh
Q 006556 295 LEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFM-----KSLGEDGRVQQEDEKVKRYK-------EEVVTIIHEYF 362 (640)
Q Consensus 295 v~e~ldDi~lDvP~A~~~l~~~v~~~~~~g~l~~~~~-----~~~~~~~~~~~~~~~~ee~~-------k~~~~il~EYf 362 (640)
.. |+..|.+. ...++..|+.+..+. ......|+- ....+-|. .....+|.-|.
T Consensus 301 ----~g----~~~~a~~l----~~~~~~~g~~~d~~~~n~Li~~y~k~g~~---~~A~~vf~~m~~~d~~s~n~li~~~~ 365 (857)
T PLN03077 301 ----LG----DERLGREM----HGYVVKTGFAVDVSVCNSLIQMYLSLGSW---GEAEKVFSRMETKDAVSWTAMISGYE 365 (857)
T ss_pred ----cC----ChHHHHHH----HHHHHHhCCccchHHHHHHHHHHHhcCCH---HHHHHHHhhCCCCCeeeHHHHHHHHH
Confidence 22 23334333 333444455443221 111112211 00001111 12466788888
Q ss_pred cCCCHHHHHHHHHHcC
Q 006556 363 LSDDIPELIRSLEDLG 378 (640)
Q Consensus 363 ~~~D~~E~~~~l~el~ 378 (640)
.+|+.+++...++++.
T Consensus 366 ~~g~~~~A~~lf~~M~ 381 (857)
T PLN03077 366 KNGLPDKALETYALME 381 (857)
T ss_pred hCCCHHHHHHHHHHHH
Confidence 8888888888888764
No 13
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.41 E-value=6.9 Score=46.28 Aligned_cols=319 Identities=15% Similarity=0.127 Sum_probs=157.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhCC--CcchHHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCHHHHHHHH----
Q 006556 219 KIADLLREYVESGDAFEACRCIRELGV--SFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGF---- 292 (640)
Q Consensus 219 ki~~lL~EY~~s~D~~EA~~cl~EL~~--p~fhhe~V~~ai~~alE~~~~~~~v~~LL~~L~~~~~is~~q~~~Gf---- 292 (640)
....+|..|...|+.+||.+.++.+.. |.-+..+++.++..+.-+....+...+++..+.+.|+.+.......+
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 456778889999999999999988843 23345566666666655443344556666666666665433222222
Q ss_pred ---------HHHhhccccccccccchHHHHHHHHHHHHhcCCCCh--hhhhhhccCCcccC---------------cchh
Q 006556 293 ---------ARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDA--SFMKSLGEDGRVQQ---------------EDEK 346 (640)
Q Consensus 293 ---------~rv~e~ldDi~lDvP~A~~~l~~~v~~~~~~g~l~~--~~~~~~~~~~~~~~---------------~~~~ 346 (640)
.++++.+++ |.... ...++......|-... .+...+...|..++ ....
T Consensus 169 ~k~g~~~~A~~lf~~m~~-----~~~~t-~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPE-----RNLAS-WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred hcCCCHHHHHHHHhcCCC-----CCeee-HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 223333332 22211 1223333334443331 11122222221100 0001
Q ss_pred HHHHHH------------HHHHHHHHhhcCCCHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChhhHHHHHHHHHHHHh
Q 006556 347 VKRYKE------------EVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLLSALHI 414 (640)
Q Consensus 347 ~ee~~k------------~~~~il~EYf~~~D~~E~~~~l~el~~p~~~~~~v~~~i~~aldr~~~eREl~s~LLs~L~~ 414 (640)
..++.. ....+|.-|...|+.+++...++++..++ .+.-..+..++-++. .-+-+-.++..+..
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~---~vt~n~li~~y~~~g-~~~eA~~lf~~M~~ 318 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT---TVAWNSMLAGYALHG-YSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCC---hhHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 111111 12567899999999999999999987664 122223333333332 33446667777765
Q ss_pred ccCChHHHHHHHHHHHhhhhhhhhchhchHHHHHHHHHHHHHhccCCchhhhHhhccCCCCCcHHHHHHHHHHHHhcccc
Q 006556 415 EIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVRVARSLIAARHA 494 (640)
Q Consensus 415 ~~ls~~~i~~gf~~lL~~l~Dl~lDiP~a~~~la~fiARaV~dd~l~~~~l~~~~~~~~~~~~g~~~l~~a~~~L~~~h~ 494 (640)
.-+.++.+ .|..++..+..+- +...+.+..+..+.+-+..+....+-|-+.+... |. +..|..++..-..
T Consensus 319 ~g~~pd~~--t~~~ll~a~~~~g-~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~-----G~--~~~A~~vf~~m~~ 388 (697)
T PLN03081 319 SGVSIDQF--TFSIMIRIFSRLA-LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW-----GR--MEDARNVFDRMPR 388 (697)
T ss_pred cCCCCCHH--HHHHHHHHHHhcc-chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC-----CC--HHHHHHHHHhCCC
Confidence 54444433 4555555554443 3445666666555544433333333333333321 11 4445444442111
Q ss_pred cccccceecCCCCcchHHHHHHHHHHHHHHHhccCHHHHHHHHHhhCCCCcch-HHHHHHHHHHhccCch--HHHHHHHH
Q 006556 495 GERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNH-EVVKKALVMAMEKKND--RMLDLLQE 571 (640)
Q Consensus 495 ~~rl~~~Wg~~~g~~~~~~k~ki~~ll~EY~~s~D~~EA~~cv~eL~~p~fhh-elV~~ai~~alE~~~~--~~~~LL~~ 571 (640)
+ ++ ..-+.++.=|...|+.+||...++++..-.+.+ .+.+.++..+.-+.+. ....+|+.
T Consensus 389 --~--d~-------------~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~ 451 (697)
T PLN03081 389 --K--NL-------------ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451 (697)
T ss_pred --C--Ce-------------eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 1 00 013456666667777777777666653222221 3444444444444322 33444444
Q ss_pred HHH
Q 006556 572 CFS 574 (640)
Q Consensus 572 l~~ 574 (640)
+.+
T Consensus 452 m~~ 454 (697)
T PLN03081 452 MSE 454 (697)
T ss_pred HHH
Confidence 443
No 14
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=92.39 E-value=29 Score=41.14 Aligned_cols=183 Identities=12% Similarity=0.105 Sum_probs=101.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhccc
Q 006556 221 ADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLD 300 (640)
Q Consensus 221 ~~lL~EY~~s~D~~EA~~cl~EL~~p~fhhe~V~~ai~~alE~~~~~~~v~~LL~~L~~~~~is~~q~~~Gf~rv~e~ld 300 (640)
+.++.=|...|++++|.+-++++..|. .+.+.++..+.-+....+....+|..+.+.|+-....-...+-+.+..+.
T Consensus 263 n~Li~~y~k~g~~~~A~~vf~~m~~~~---~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g 339 (697)
T PLN03081 263 CALIDMYSKCGDIEDARCVFDGMPEKT---TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCC---hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 678999999999999999999997663 46677777777666555667889999988876543322222222222222
Q ss_pred cccccccchHHHHHHHHHHHHhcCCCC-hhhhhhhccCCcccCcchhHHHHH-------HHHHHHHHHhhcCCCHHHHHH
Q 006556 301 DLALDIPSARNLFQSIVPVAISEGWLD-ASFMKSLGEDGRVQQEDEKVKRYK-------EEVVTIIHEYFLSDDIPELIR 372 (640)
Q Consensus 301 Di~lDvP~A~~~l~~~v~~~~~~g~l~-~~~~~~~~~~~~~~~~~~~~ee~~-------k~~~~il~EYf~~~D~~E~~~ 372 (640)
++..|.+.++.++...+...... -.++......|+- ....+.|. ...+.+|.-|..+|+.+++..
T Consensus 340 ----~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~---~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~ 412 (697)
T PLN03081 340 ----LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM---EDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVE 412 (697)
T ss_pred ----chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCH---HHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHH
Confidence 23455555554443322211111 1122222222211 01111111 134678888999999999999
Q ss_pred HHHHcCCCCCchH-HHHHHHHHhhcCChhhHHHHHHHHHHHHh
Q 006556 373 SLEDLGAPEFNPI-FLKKVITLAMDRKNREKEMASVLLSALHI 414 (640)
Q Consensus 373 ~l~el~~p~~~~~-~v~~~i~~aldr~~~eREl~s~LLs~L~~ 414 (640)
.++++..-...|. ++-..+..|.-+.. .-+.+-+++..+..
T Consensus 413 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g-~~~~a~~~f~~m~~ 454 (697)
T PLN03081 413 MFERMIAEGVAPNHVTFLAVLSACRYSG-LSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhcCC-cHHHHHHHHHHHHH
Confidence 9988764333333 22233333444432 23335555555543
No 15
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=83.05 E-value=70 Score=34.18 Aligned_cols=143 Identities=22% Similarity=0.191 Sum_probs=78.4
Q ss_pred hhhHHHHHHHHHHHHHhcCCCChhhhhhhhhcCCCCchHHHHHHHHHhhcccCCCc--------hhHHhhhhcCCCCCCH
Q 006556 142 ILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHH--------AELVERRWGGSTHITV 213 (640)
Q Consensus 142 iP~a~~~la~fiAraV~d~~l~~~~l~~~~~~~~~~~~g~~~l~~a~~~lLs~~~~--------~~rl~~~Wgg~~~~~~ 213 (640)
||+=.+-+|.=+++.|.++.+++..+.+...... -...+.+. +..+.+ ...+..++.. ...
T Consensus 35 ip~~r~~~~~~~~~~v~~~ll~~~~i~~~l~~~~---~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~---~~~ 103 (367)
T PF04286_consen 35 IPKNRERIAESIGEMVENELLTPETIRRKLESED---FSERLIEW-----LQDPENREKLRRILAELLEEILEK---IDQ 103 (367)
T ss_pred ccccHHHHHHHHHHHHHHHCCCHHHHHHHHhccc---HHHHHHHH-----HhchhhhHHHHHHHHHHHHHHhhh---hhh
Confidence 7899999999999999999999999888765321 11111111 111111 1123333333 233
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHH-HHhCCCcchHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHcCCCC--HHH
Q 006556 214 EEVKKKIADLLREYVESGDAFEACRCI-RELGVSFFHHEVVKRALVLAME---IRTAEPLILKLLKEAAEEGLIS--SSQ 287 (640)
Q Consensus 214 ~el~~ki~~lL~EY~~s~D~~EA~~cl-~EL~~p~fhhe~V~~ai~~alE---~~~~~~~v~~LL~~L~~~~~is--~~q 287 (640)
+.+.+-++..+..++...........+ +.+-.+.+|+.++...+....+ ....++.+.+++.....+..-+ .+.
T Consensus 104 ~~i~~~i~~~~~~~l~~~~~~~~~~~~l~~ll~~~~~~~l~~~il~~i~~~l~~~e~~~~I~~~i~~~~~~~~~~~~~~~ 183 (367)
T PF04286_consen 104 EKIAEFIEKNLRKKLSEIILAPLLQKLLRSLLEEEQHQKLLDRILEKIKEYLKSEETRERIRDLIEEFLEEYLGKSFLDK 183 (367)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccchHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcccchhhH
Confidence 555555555555555555554444333 4444445566666665544333 2234455777777776654443 444
Q ss_pred HHHHHHHH
Q 006556 288 MAKGFARL 295 (640)
Q Consensus 288 ~~~Gf~rv 295 (640)
+...|..-
T Consensus 184 l~~~i~~~ 191 (367)
T PF04286_consen 184 LAEKIQDE 191 (367)
T ss_pred HHHHHHHH
Confidence 44444444
No 16
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=69.95 E-value=32 Score=37.37 Aligned_cols=188 Identities=16% Similarity=0.207 Sum_probs=91.1
Q ss_pred HHhhhhhhhcchhhHHHHHHHHHHHHHhcCCCChhhhhhhhhcCCCCchHHHHHHHHHhhcccCCCchhHHhhhhcCCCC
Q 006556 131 LLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGSTH 210 (640)
Q Consensus 131 lL~~l~Dl~lDiP~a~~~la~fiAraV~d~~l~~~~l~~~~~~~~~~~~g~~~l~~a~~~lLs~~~~~~rl~~~Wgg~~~ 210 (640)
++++|.+|...-|.-++ .-+.||+..|..+|.|-....-+ ++-...|.+.+
T Consensus 8 lvdslk~l~~qg~~~k~---~~lsral~ag~~spdf~~~i~wl----~~Elr~L~k~e---------------------- 58 (465)
T KOG3973|consen 8 LVDSLKALSFQGHCQKQ---ENLSRALMAGGISPDFANQIIWL----CAELRELYKIE---------------------- 58 (465)
T ss_pred HHHHHHHhccCCcccch---hhHHHHHHcCCCChhHHHHHHHH----HHHHHHHHHHH----------------------
Confidence 56666776666665544 45789999999998775543221 11122333332
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhccCCc-hHHHHHHHHHHHHcCCCCHHHH-
Q 006556 211 ITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTA-EPLILKLLKEAAEEGLISSSQM- 288 (640)
Q Consensus 211 ~~~~el~~ki~~lL~EY~~s~D~~EA~~cl~EL~~p~fhhe~V~~ai~~alE~~~~-~~~v~~LL~~L~~~~~is~~q~- 288 (640)
|.+..--+..++||+- |....+-||+||+ .+++.--|..-+-..++ .-++.-|..+|-....|+..+.
T Consensus 59 ---E~V~q~~~~~~~eF~~-----elS~lL~El~CPy--~eLt~Gdi~~Rf~s~~a~~lLlsyL~SEl~tarmi~~~~p~ 128 (465)
T KOG3973|consen 59 ---EYVRQPNDHNLLEFLY-----ELSTLLLELECPY--EELTCGDIRTRFQSSSAKKLLLSYLDSELKTARMITRQRPE 128 (465)
T ss_pred ---HHhcCCChhhHHHHHH-----HHHHHHHHcCCch--HhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 1111113445566643 5666788999995 56665555443332211 1111112222222233332222
Q ss_pred ------HHHHHHHhhcccccccc--ccc------hHHHHHHHHHHHHhcCCCChhhhhhhccC------CcccCcchhHH
Q 006556 289 ------AKGFARLEESLDDLALD--IPS------ARNLFQSIVPVAISEGWLDASFMKSLGED------GRVQQEDEKVK 348 (640)
Q Consensus 289 ------~~Gf~rv~e~ldDi~lD--vP~------A~~~l~~~v~~~~~~g~l~~~~~~~~~~~------~~~~~~~~~~e 348 (640)
.++=..|...++-+++| .|+ -|.+|+.+-.+. ++ -++..++. -+|+..+-+-+
T Consensus 129 ~p~~~~ek~d~ev~q~i~~~~~~L~~~k~p~Nin~~~lfe~i~~kl--~~-----ai~kv~p~~~~~PLlKkpl~~a~w~ 201 (465)
T KOG3973|consen 129 SPEIVSEKRDLEVTQLIDSALRTLNFPKQPGNINEWKLFETIRQKL--DG-----AIKKVSPSQRSHPLLKKPLDEATWP 201 (465)
T ss_pred CCccccccCCchHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHH--Hh-----HHhcCCHhhcCCchhcCcCChhhHH
Confidence 11112222223322222 232 345555554441 22 12222221 12344556678
Q ss_pred HHHHHHHHHHHHhhcC
Q 006556 349 RYKEEVVTIIHEYFLS 364 (640)
Q Consensus 349 e~~k~~~~il~EYf~~ 364 (640)
++.+..+++-.||++-
T Consensus 202 ~iE~~~~~~~~ey~~R 217 (465)
T KOG3973|consen 202 EIEKQCESFSREYYNR 217 (465)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999999999864
No 17
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.39 E-value=1.9e+02 Score=34.90 Aligned_cols=241 Identities=17% Similarity=0.213 Sum_probs=127.0
Q ss_pred CHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhCCCCHHHHHH
Q 006556 48 PLDDYKKAVASI-IEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRD 126 (640)
Q Consensus 48 s~ee~~k~~~~i-l~EYf~~~D~~Ea~~~l~eL~~p~~~~~~v~~~i~~aLdr~~~eREl~s~LLs~L~~~~ls~~~i~~ 126 (640)
.+.-+++.+-.+ |-||.. .|...-...++++...-|....+...+.-=+..+...+ ...++|.+||- =..++.+
T Consensus 449 ~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~-~L~e~La~LYl---~d~~Y~~ 523 (846)
T KOG2066|consen 449 GPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSEST-ALLEVLAHLYL---YDNKYEK 523 (846)
T ss_pred CCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccch-hHHHHHHHHHH---HccChHH
Confidence 334466655554 455555 88888888888864432444443333333333333333 34455888873 2235666
Q ss_pred HHHHHHhhhhhhhcchhhHHHHH---HHHHHH-----------HHh--cCCCChhhhhhhhhcCC---------------
Q 006556 127 GFVILLESADDLAVDILDAVDIL---ALFVAR-----------AVV--DDILPPAFLTRAKKTLP--------------- 175 (640)
Q Consensus 127 Gf~~lL~~l~Dl~lDiP~a~~~l---a~fiAr-----------aV~--d~~l~~~~l~~~~~~~~--------------- 175 (640)
||...+.--+--..|+=+-.... +.-+-+ ... -+.+||++|-......|
T Consensus 524 Al~~ylklk~~~vf~lI~k~nL~d~i~~~Iv~Lmll~skka~~lLldn~d~ip~a~Vveql~~~P~~l~~YL~kl~~rd~ 603 (846)
T KOG2066|consen 524 ALPIYLKLQDKDVFDLIKKHNLFDQIKDQIVLLMLLDSKKAIDLLLDNRDSISPSEVVEQLEDNPKLLYCYLHKLFKRDH 603 (846)
T ss_pred HHHHHHhccChHHHHHHHHHhhHHHHHHHHHHHHccchhhHHHHHhhccccCCHHHHHHHHhcChHHHHHHHHHHhhcCc
Confidence 66655544444433332222211 111111 112 23567766655433211
Q ss_pred --CCchHHHHHH-HHH---hhcc-----------------cCCCc-hhHHhhhhcCCCCCCHHHHHHHHHHHHHHHHhcC
Q 006556 176 --AASKGFQVIQ-TAE---KSYL-----------------SAPHH-AELVERRWGGSTHITVEEVKKKIADLLREYVESG 231 (640)
Q Consensus 176 --~~~~g~~~l~-~a~---~~lL-----------------s~~~~-~~rl~~~Wgg~~~~~~~el~~ki~~lL~EY~~s~ 231 (640)
.+..+-..+. -|+ +++| +.+.| .+-+-.+||-.+ +.++..+.++.|| +
T Consensus 604 ~~~~~y~dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmG-----n~k~AL~lII~el---~ 675 (846)
T KOG2066|consen 604 FMGSEYHDKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMG-----NAKEALKLIINEL---R 675 (846)
T ss_pred cccchhhhHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhc-----chHHHHHHHHHHh---h
Confidence 1111111111 111 1222 22222 334778898554 4678888999987 6
Q ss_pred CHHHHHHHHHHhCCCcchHHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhccccccccccchHH
Q 006556 232 DAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARN 311 (640)
Q Consensus 232 D~~EA~~cl~EL~~p~fhhe~V~~ai~~alE~~~~~~~v~~LL~~L~~~~~is~~q~~~Gf~rv~e~ldDi~lDvP~A~~ 311 (640)
|++.|++.++|-+-|.++..+ |.-++++. +.+.+||. +++...-. -++.-++| -++||+-.+
T Consensus 676 die~AIefvKeq~D~eLWe~L----I~~~ldkP---e~~~~ll~------i~~~~dpl----~ii~kip~-g~~IPnLrd 737 (846)
T KOG2066|consen 676 DIEKAIEFVKEQDDSELWEDL----INYSLDKP---EFIKALLN------IGEHEDPL----LIIRKIPD-GLEIPNLRD 737 (846)
T ss_pred CHHHHHHHHHhcCCHHHHHHH----HHHhhcCc---HHHHHHHH------hhhcccHH----HHHhcCCC-CCCCccHHH
Confidence 899999999999887777666 45567654 45555544 22222222 12333333 368999988
Q ss_pred HHHHHHHH
Q 006556 312 LFQSIVPV 319 (640)
Q Consensus 312 ~l~~~v~~ 319 (640)
.+-+++.-
T Consensus 738 sl~Kil~d 745 (846)
T KOG2066|consen 738 SLVKILQD 745 (846)
T ss_pred HHHHHHHh
Confidence 88887754
No 18
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.92 E-value=2.9e+02 Score=33.42 Aligned_cols=95 Identities=16% Similarity=0.156 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhcc
Q 006556 220 IADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESL 299 (640)
Q Consensus 220 i~~lL~EY~~s~D~~EA~~cl~EL~~p~fhhe~V~~ai~~alE~~~~~~~v~~LL~~L~~~~~is~~q~~~Gf~rv~e~l 299 (640)
-..+|-||+. .|.......+++.+--.|--..|..|+.--+.+.+....+.++|.+|+-- ..|+.++|.+.+..-
T Consensus 458 YemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~----d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 458 YEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLY----DNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHH----ccChHHHHHHHHhcc
Confidence 4567888888 89999999999997533433444444333333334455778888887633 357888888888766
Q ss_pred ccccccccchHHHHHHHHHH
Q 006556 300 DDLALDIPSARNLFQSIVPV 319 (640)
Q Consensus 300 dDi~lDvP~A~~~l~~~v~~ 319 (640)
+=-.+|+=.-+.++...-+.
T Consensus 533 ~~~vf~lI~k~nL~d~i~~~ 552 (846)
T KOG2066|consen 533 DKDVFDLIKKHNLFDQIKDQ 552 (846)
T ss_pred ChHHHHHHHHHhhHHHHHHH
Confidence 55555554444444444333
No 19
>PF04774 HABP4_PAI-RBP1: Hyaluronan / mRNA binding family; InterPro: IPR006861 This entry includes the HABP4 protein family of hyaluronan-binding proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1. HABP4 has been observed to bind hyaluronan (a glucosaminoglycan), but it is not known whether this is its primary role in vivo. It has also been observed to bind RNA, but with a lower affinity than that for hyaluronan []. PAI-1 mRNA-binding protein specifically binds the mRNA of type-1 plasminogen activator inhibitor (PAI-1), and is thought to be involved in regulation of mRNA stability []. However, in both cases, the sequence motifs predicted to be important for ligand binding are not conserved throughout the family, so it is not known whether members of this family share a common function. Hyaluronan/mRNA-binding protein may be involved in nuclear functions such as the remodeling of chromatin and the regulation of transcription [, ].
Probab=64.55 E-value=8.9 Score=34.21 Aligned_cols=17 Identities=35% Similarity=0.698 Sum_probs=14.1
Q ss_pred cccCcccccccCccccc
Q 006556 2 VIDGAGGKGTWGKLLDT 18 (640)
Q Consensus 2 ~~~G~ggk~~wg~~~~~ 18 (640)
.|-+|+|++.||.+.++
T Consensus 18 ~Kk~G~G~~NWG~~~de 34 (106)
T PF04774_consen 18 DKKGGGGAHNWGSPKDE 34 (106)
T ss_pred cCCCCccccCCCCccch
Confidence 36688999999998765
No 20
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=54.71 E-value=24 Score=28.73 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHhCCCcchHHHHHHH
Q 006556 212 TVEEVKKKIADLLREYVE--SGDAFEACRCIRELGVSFFHHEVVKRA 256 (640)
Q Consensus 212 ~~~el~~ki~~lL~EY~~--s~D~~EA~~cl~EL~~p~fhhe~V~~a 256 (640)
|-+++++.|..++.|--. -.|++|-..|.-.||.|.+|..+|+-.
T Consensus 4 P~~DFr~SM~EMI~~~~i~~~~~LeeLL~cYL~LN~~~~H~~Iv~aF 50 (59)
T PF04844_consen 4 PYEDFRESMVEMIEENGIRDWDDLEELLACYLSLNSPEHHKFIVEAF 50 (59)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCChhhhhHHHHHH
Confidence 457899999999988733 358999999999999998776655443
No 21
>PLN02591 tryptophan synthase
Probab=53.13 E-value=47 Score=34.66 Aligned_cols=90 Identities=22% Similarity=0.363 Sum_probs=68.6
Q ss_pred HHHhhCCCCcch----HHHHHHHHHHhccCc--hHHHHHHHHHHHcCCCC------HHH-HHhHHHHHhhccchhhc---
Q 006556 536 CIRDLGMPFFNH----EVVKKALVMAMEKKN--DRMLDLLQECFSEGLIT------TNQ-MTKGFTRIKDGLDDLAL--- 599 (640)
Q Consensus 536 cv~eL~~p~fhh----elV~~ai~~alE~~~--~~~~~LL~~l~~~~~vs------~~q-~~~Gf~rv~~~l~Di~l--- 599 (640)
-+=||++||--+ .++++|-..|++.+. +.++++++.+..+--+. -+. +..|+.|+++.+.+.-+
T Consensus 31 d~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~Gv 110 (250)
T PLN02591 31 DVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGL 110 (250)
T ss_pred CEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEE
Confidence 346889999987 899999999999884 47888888877431111 123 44599999999999888
Q ss_pred ---cccchHHHHHHHHHHHHHcCCCCCcccc
Q 006556 600 ---DIPNAKEKFTFYVEYARKKGWLLPAFGS 627 (640)
Q Consensus 600 ---DvP~A~~~l~~~v~~~~~~g~l~~~~~~ 627 (640)
|+| ++..+.+.+.|.+.|+=.--+.+
T Consensus 111 iipDLP--~ee~~~~~~~~~~~gl~~I~lv~ 139 (250)
T PLN02591 111 VVPDLP--LEETEALRAEAAKNGIELVLLTT 139 (250)
T ss_pred EeCCCC--HHHHHHHHHHHHHcCCeEEEEeC
Confidence 777 48888999999998876555543
No 22
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=48.43 E-value=52 Score=34.48 Aligned_cols=88 Identities=22% Similarity=0.318 Sum_probs=67.2
Q ss_pred HhhCCCCcch----HHHHHHHHHHhccCc--hHHHHHHHHHHHcCCCCH-------HHHHh-HHHHHhhccchhhc----
Q 006556 538 RDLGMPFFNH----EVVKKALVMAMEKKN--DRMLDLLQECFSEGLITT-------NQMTK-GFTRIKDGLDDLAL---- 599 (640)
Q Consensus 538 ~eL~~p~fhh----elV~~ai~~alE~~~--~~~~~LL~~l~~~~~vs~-------~q~~~-Gf~rv~~~l~Di~l---- 599 (640)
=||++|+--+ .++++|-..||+.+. +.++++++.+-....=++ +.+.+ |+.++++.+.+...
T Consensus 43 iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGvi 122 (258)
T PRK13111 43 IELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLI 122 (258)
T ss_pred EEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEE
Confidence 4789999877 889999999999884 368888888874322122 45445 99999999999888
Q ss_pred --cccchHHHHHHHHHHHHHcCCCCCcccc
Q 006556 600 --DIPNAKEKFTFYVEYARKKGWLLPAFGS 627 (640)
Q Consensus 600 --DvP~A~~~l~~~v~~~~~~g~l~~~~~~ 627 (640)
|+| ++....++++|.+.|+-.-.|.+
T Consensus 123 ipDLp--~ee~~~~~~~~~~~gl~~I~lva 150 (258)
T PRK13111 123 IPDLP--PEEAEELRAAAKKHGLDLIFLVA 150 (258)
T ss_pred ECCCC--HHHHHHHHHHHHHcCCcEEEEeC
Confidence 777 47888999999998875554443
No 23
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=48.25 E-value=1.4e+02 Score=27.82 Aligned_cols=87 Identities=13% Similarity=0.171 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHhcCCCChhhhhhhccCCcc--cCcchhHH
Q 006556 271 LKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRV--QQEDEKVK 348 (640)
Q Consensus 271 ~~LL~~L~~~~~is~~q~~~Gf~rv~e~ldDi~lDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~~--~~~~~~~e 348 (640)
..+++.|.+.|-+|..++...+..- -+-++.-+..++.++...|+|... ..||. ..+..+.+
T Consensus 7 ~~VM~vlW~~~~~t~~eI~~~l~~~----------~~~~~tTv~T~L~rL~~KG~v~~~------k~gr~~~Y~p~vs~e 70 (130)
T TIGR02698 7 WEVMRVVWTLGETTSRDIIRILAEK----------KDWSDSTIKTLLGRLVDKGCLTTE------KEGRKFIYTALVSED 70 (130)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHhhc----------cCCcHHHHHHHHHHHHHCCceeee------cCCCcEEEEecCCHH
Confidence 3466677888989988887776431 346788899999999999999644 23554 56677888
Q ss_pred HHHHHH-HHHHHHhhcCCCHHHHHHHH
Q 006556 349 RYKEEV-VTIIHEYFLSDDIPELIRSL 374 (640)
Q Consensus 349 e~~k~~-~~il~EYf~~~D~~E~~~~l 374 (640)
+|.+.. ..+++. +-.|+...++..|
T Consensus 71 e~~~~~~~~~~~~-~f~gs~~~ll~~l 96 (130)
T TIGR02698 71 EAVENAAQELFSR-ICSRKVGAVIADL 96 (130)
T ss_pred HHHHHHHHHHHHH-HHCCCHHHHHHHH
Confidence 885544 444444 4445555544444
No 24
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=47.03 E-value=52 Score=26.82 Aligned_cols=47 Identities=26% Similarity=0.444 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHhCCCCChHHHHHHHHH
Q 006556 48 PLDDYKKAVASIIEEYF--STGDVEVAASDLRELGSSEYHPYFIKRLVS 94 (640)
Q Consensus 48 s~ee~~k~~~~il~EYf--~~~D~~Ea~~~l~eL~~p~~~~~~v~~~i~ 94 (640)
..++|++.+...|.+-- .-.+++|-+.|.=.||.|.+|..+|+.+..
T Consensus 4 P~~DFr~SM~EMI~~~~i~~~~~LeeLL~cYL~LN~~~~H~~Iv~aF~d 52 (59)
T PF04844_consen 4 PYEDFRESMVEMIEENGIRDWDDLEELLACYLSLNSPEHHKFIVEAFVD 52 (59)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCChhhhhHHHHHHHH
Confidence 35899998888888764 334889999999999999999988877655
No 25
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=46.66 E-value=1.3e+02 Score=28.75 Aligned_cols=115 Identities=12% Similarity=0.053 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhCCCC---ChHHHHHHHHHHhcCCChhHHHHHHHHHHHHHh-CC-CCHHHHHHHH
Q 006556 54 KAVASIIEEYFSTGDVEVAASDLRELGSSE---YHPYFIKRLVSMAMDRHDKEKEMASVLLSALYA-DV-ISPDQIRDGF 128 (640)
Q Consensus 54 k~~~~il~EYf~~~D~~Ea~~~l~eL~~p~---~~~~~v~~~i~~aLdr~~~eREl~s~LLs~L~~-~~-ls~~~i~~Gf 128 (640)
|+++.++...- .++.+..+..+..+.... ....++..+++.+.... .-..+.++|.+.|+. .. -=...+.+.+
T Consensus 2 r~v~~~lnklt-~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~-~~~~~~a~l~~~l~~~~~~~f~~~ll~~~ 79 (209)
T PF02854_consen 2 RKVRGILNKLT-PSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEP-NFSPLYARLCAALNSRFPSEFRSLLLNRC 79 (209)
T ss_dssp HHHHHHHHHCS-STTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSG-GGHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred chHHHHHHHCC-HHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCc-hHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 55666666654 777778887777766554 66677777777766655 556677777777765 22 1123333444
Q ss_pred HHHHhh------hhhhhcchhhHHHHHHHHHHHHHhcCCCChhhhhhh
Q 006556 129 VILLES------ADDLAVDILDAVDILALFVARAVVDDILPPAFLTRA 170 (640)
Q Consensus 129 ~~lL~~------l~Dl~lDiP~a~~~la~fiAraV~d~~l~~~~l~~~ 170 (640)
..-+.. .++..--.-.-+.-...|+|....-++++...+...
T Consensus 80 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~ 127 (209)
T PF02854_consen 80 QEEFEERYSNEELEENRQSSKQRRRGNIRFLAELFNFGVVSEKIIFDI 127 (209)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhhhhhHHHhhHhhccccchhHHHH
Confidence 444443 333443344456677889999999999998877764
No 26
>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568. This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.
Probab=41.80 E-value=79 Score=26.38 Aligned_cols=44 Identities=16% Similarity=0.272 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHHHHh--c-CCHHHHHHHHHHhCCCcchHHHHHH
Q 006556 212 TVEEVKKKIADLLREYVE--S-GDAFEACRCIRELGVSFFHHEVVKR 255 (640)
Q Consensus 212 ~~~el~~ki~~lL~EY~~--s-~D~~EA~~cl~EL~~p~fhhe~V~~ 255 (640)
|-.++++.|.+++.|-=. . .+++|-..|.-.||.|..|+.+|.-
T Consensus 10 Py~DFr~SM~EMI~~~~i~~~w~~LeeLL~cYL~LN~~~~H~~Iv~A 56 (66)
T TIGR01568 10 PYEDFRRSMEEMIEERELEADWKELEELLACYLDLNPKKSHRFIVRA 56 (66)
T ss_pred hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCchhhhHHHHH
Confidence 567899999999998733 2 4689999999999988866655443
No 27
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=40.44 E-value=4.8e+02 Score=27.73 Aligned_cols=133 Identities=11% Similarity=0.141 Sum_probs=72.8
Q ss_pred ccchHHHHHHHHHHHHhcCCCChhhhhhhccCC-cc-----cCc-chhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHcC
Q 006556 306 IPSARNLFQSIVPVAISEGWLDASFMKSLGEDG-RV-----QQE-DEKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLG 378 (640)
Q Consensus 306 vP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~-~~-----~~~-~~~~ee~~k~~~~il~EYf~~~D~~E~~~~l~el~ 378 (640)
||+-.+.+++=++..+...+|+++.+..--... .. ... ....+.+.......+.+++..-+.+.+...+..
T Consensus 35 ip~~r~~~~~~~~~~v~~~ll~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~i~~-- 112 (367)
T PF04286_consen 35 IPKNRERIAESIGEMVENELLTPETIRRKLESEDFSERLIEWLQDPENREKLRRILAELLEEILEKIDQEKIAEFIEK-- 112 (367)
T ss_pred ccccHHHHHHHHHHHHHHHCCCHHHHHHHHhcccHHHHHHHHHhchhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHH--
Confidence 688999999999999999999987766543322 11 111 222344455555555555555555444433333
Q ss_pred CCCCchHHHHHHHHHhhcCChhhHHHHHHHHHHHHhccCChHHHHHHHHHHHhhhhhhhhchhchHHHHHHHHHHHHHh
Q 006556 379 APEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVID 457 (640)
Q Consensus 379 ~p~~~~~~v~~~i~~aldr~~~eREl~s~LLs~L~~~~ls~~~i~~gf~~lL~~l~Dl~lDiP~a~~~la~fiARaV~d 457 (640)
.+...+.. ...+.+++.+...++........++.+++.+.+.. +-|.....+..++...+.+
T Consensus 113 -----------~~~~~l~~-----~~~~~~~~~~l~~ll~~~~~~~l~~~il~~i~~~l-~~~e~~~~I~~~i~~~~~~ 174 (367)
T PF04286_consen 113 -----------NLRKKLSE-----IILAPLLQKLLRSLLEEEQHQKLLDRILEKIKEYL-KSEETRERIRDLIEEFLEE 174 (367)
T ss_pred -----------HHHHHHHH-----hccchhHHHHHHHHHhccchHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHH
Confidence 22211111 11112222222233456666666666777766644 4477777777766666544
No 28
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=38.63 E-value=1.1e+02 Score=25.02 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHhccC-CchHHHHHHHHHHHHcCCCCHHHHH
Q 006556 249 HHEVVKRALVLAMEIR-TAEPLILKLLKEAAEEGLISSSQMA 289 (640)
Q Consensus 249 hhe~V~~ai~~alE~~-~~~~~v~~LL~~L~~~~~is~~q~~ 289 (640)
.+++|..|+..++++. ....-+-..|+.-.++|+-|.+|..
T Consensus 31 ~~evI~~ai~~a~~~~~~~~~Yi~~Il~~W~~~gi~T~e~~~ 72 (73)
T TIGR01446 31 SPELIKEALKEAVSNNKANYKYIDAILNNWKNNGIKTVEDVE 72 (73)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHh
Confidence 3789999999988754 4457888999999999999999864
No 29
>PF05044 HPD: Homeo-prospero domain; InterPro: IPR007738 The homeobox gene Prox1 is expressed in a subpopulation of endothelial cells that, after budding from veins, gives rise to the mammalian lymphatic system []. Prox1 has been found to be an early specific marker for the developing liver and pancreas in the mammalian foregut endoderm []. This family contains an atypical homeobox domain.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2LMD_A 1XPX_A 1MIJ_A.
Probab=37.74 E-value=1.1e+02 Score=29.49 Aligned_cols=69 Identities=23% Similarity=0.267 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHhcCCCChhhhhhhccCCcc-----------cCcchhHHHHH
Q 006556 283 ISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRV-----------QQEDEKVKRYK 351 (640)
Q Consensus 283 is~~q~~~Gf~rv~e~ldDi~lDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~~-----------~~~~~~~ee~~ 351 (640)
.+++|+.|.|...-|. -|-+++++...|+.+|+=+.+-+.= .+.-+ ..+-...+.|.
T Consensus 38 ~~TsQLiKWFSNFREF----------yYiQMEK~ARqa~~eGv~~~~~l~V--~rdsELfr~LN~HYNk~N~~evP~~Fl 105 (158)
T PF05044_consen 38 CNTSQLIKWFSNFREF----------YYIQMEKFARQAVSEGVKNADDLRV--TRDSELFRVLNMHYNKNNDFEVPDRFL 105 (158)
T ss_dssp HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHT-S-GGGSSS--S-TTCHHHHHHHHHHTT-STT--HHHH
T ss_pred hhHHHHHHHhccchhH----------HHHHHHHHHHHHHHccCCcHHHeee--ccchHHHHHHHhhcccCCCccCchhHH
Confidence 3578999999999885 5899999999999999987653321 11111 23455669999
Q ss_pred HHHHHHHHHhhc
Q 006556 352 EEVVTIIHEYFL 363 (640)
Q Consensus 352 k~~~~il~EYf~ 363 (640)
..++..|+|+|+
T Consensus 106 ~v~~~tLrEFf~ 117 (158)
T PF05044_consen 106 EVVQITLREFFN 117 (158)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999996
No 30
>PF12854 PPR_1: PPR repeat
Probab=35.95 E-value=52 Score=23.14 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHh
Q 006556 220 IADLLREYVESGDAFEACRCIREL 243 (640)
Q Consensus 220 i~~lL~EY~~s~D~~EA~~cl~EL 243 (640)
-+.+|.-|...|+++||.+.+++.
T Consensus 10 y~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 10 YNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhC
Confidence 467999999999999999999875
No 31
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=35.15 E-value=6.3e+02 Score=31.87 Aligned_cols=160 Identities=19% Similarity=0.380 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHH---HHHHHHhCCCcchHHHHHHHHHHHhccCC-------chHHHHHHHHHHHHcCC-
Q 006556 214 EEVKKKIADLLREYVESGDAFEA---CRCIRELGVSFFHHEVVKRALVLAMEIRT-------AEPLILKLLKEAAEEGL- 282 (640)
Q Consensus 214 ~el~~ki~~lL~EY~~s~D~~EA---~~cl~EL~~p~fhhe~V~~ai~~alE~~~-------~~~~v~~LL~~L~~~~~- 282 (640)
+.+..++..+...|....+..|+ .+.|..+--|. .+-+++++.++++.-. .++.+++++-....++.
T Consensus 694 ~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~--~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~ 771 (1133)
T KOG1943|consen 694 DAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCS--EERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAW 771 (1133)
T ss_pred HHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCch--HHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCccccc
Confidence 45677788888888888888777 56667765554 3556677777776431 13334333333222221
Q ss_pred -CCHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHhcCCCChhhhhhhccCCcccCcchhHHHHHHHHHHHHHHh
Q 006556 283 -ISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQQEDEKVKRYKEEVVTIIHEY 361 (640)
Q Consensus 283 -is~~q~~~Gf~rv~e~ldDi~lDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~ee~~k~~~~il~EY 361 (640)
.+-.|-.+|..++....- ....+.+.++|.+..-..+.+|
T Consensus 772 a~aR~~~V~al~~v~~~~~---------------------------------------~~~~~~~~~k~~e~LL~~lddY 812 (1133)
T KOG1943|consen 772 AEARQQNVKALAHVCKTVT---------------------------------------SLLFSESIEKFRETLLNALDDY 812 (1133)
T ss_pred HHHHHHHHHHHHHHHHHHH---------------------------------------HhhccccHHHHHHHHHHHHhhc
Confidence 000111111111111110 1223556789999999999999
Q ss_pred hcC--CCH-----HHHHHHHHHc----CCCC-CchH----HHHHHHHHhhcCChhhHHHHHHHHHHHHh
Q 006556 362 FLS--DDI-----PELIRSLEDL----GAPE-FNPI----FLKKVITLAMDRKNREKEMASVLLSALHI 414 (640)
Q Consensus 362 f~~--~D~-----~E~~~~l~el----~~p~-~~~~----~v~~~i~~aldr~~~eREl~s~LLs~L~~ 414 (640)
... ||+ .++..++..+ ..|+ +-.. .+..++..+.||-++=||++...+..+.-
T Consensus 813 ttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~ 881 (1133)
T KOG1943|consen 813 TTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVV 881 (1133)
T ss_pred ccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceee
Confidence 966 677 4455555543 2244 3344 44556668999999999999998887753
No 32
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=34.99 E-value=3.3e+02 Score=28.25 Aligned_cols=65 Identities=17% Similarity=0.193 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHhcCCCChhhhhhhccCCcccCcchhHHHH
Q 006556 271 LKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQQEDEKVKRY 350 (640)
Q Consensus 271 ~~LL~~L~~~~~is~~q~~~Gf~rv~e~ldDi~lDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~ee~ 350 (640)
-.-+..+.+.||-|.+|+..|+.+.-.+-.|. .|.. ++|+.=|...+.. ..-.|+.+|+
T Consensus 68 r~Wi~~f~engI~t~eQv~~Gm~~aR~~~spF---~PS~----GqFI~WCk~~~~~--------------~lGLP~~del 126 (233)
T PF06992_consen 68 RQWIKAFAENGITTMEQVRAGMRRARASESPF---WPSP----GQFIAWCKPGDYE--------------ALGLPSVDEL 126 (233)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCC---CCCh----hHHHHHHhcchHH--------------hcCCCCHHHH
Confidence 34567889999999999999999998774432 3433 6777777654331 1125677777
Q ss_pred HHHHHH
Q 006556 351 KEEVVT 356 (640)
Q Consensus 351 ~k~~~~ 356 (640)
-..+..
T Consensus 127 ~~~~~~ 132 (233)
T PF06992_consen 127 YQRYKR 132 (233)
T ss_pred HHHHHH
Confidence 666544
No 33
>PRK09498 sifA secreted effector protein SifA; Reviewed
Probab=34.45 E-value=73 Score=33.90 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 006556 218 KKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAA 278 (640)
Q Consensus 218 ~ki~~lL~EY~~s~D~~EA~~cl~EL~~p~fhhe~V~~ai~~alE~~~~~~~v~~LL~~L~ 278 (640)
..+=+-+|+||.|--..||-+||+||--|. ....++.+.++|..|.
T Consensus 28 ~~LWEKIKdFFcSThqaeA~~CI~eLchp~---------------~~~trE~i~~~F~~Lk 73 (336)
T PRK09498 28 KVLWEKIKDFFFSTGKAKADRCLHEMLFAD---------------RAPTRERLTEIFFELK 73 (336)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHhCCC---------------CCCCHHHHHHHHHHHH
Confidence 344456789999999999999999995442 2345666666655553
No 34
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=34.31 E-value=79 Score=22.12 Aligned_cols=26 Identities=38% Similarity=0.408 Sum_probs=21.8
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHh
Q 006556 271 LKLLKEAAEEGLISSSQMAKGFARLE 296 (640)
Q Consensus 271 ~~LL~~L~~~~~is~~q~~~Gf~rv~ 296 (640)
+.-|+.|+.+|+||.+.|.+-=.+++
T Consensus 5 L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 5 LEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 45688999999999999998766654
No 35
>PF12854 PPR_1: PPR repeat
Probab=33.40 E-value=58 Score=22.90 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.4
Q ss_pred HHHHHHHHHhccCHHHHHHHHHhh
Q 006556 517 IMKLLEEYESGGVVSEACQCIRDL 540 (640)
Q Consensus 517 i~~ll~EY~~s~D~~EA~~cv~eL 540 (640)
-+.+|.-|...|+++||.+.+++.
T Consensus 10 y~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 10 YNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhC
Confidence 467899999999999999999875
No 36
>PF08876 DUF1836: Domain of unknown function (DUF1836); InterPro: IPR014975 This group of proteins are functionally uncharacterised.
Probab=33.02 E-value=44 Score=30.33 Aligned_cols=62 Identities=16% Similarity=0.143 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhccC-CchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhccccccccccchHHH
Q 006556 251 EVVKRALVLAMEIR-TAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNL 312 (640)
Q Consensus 251 e~V~~ai~~alE~~-~~~~~v~~LL~~L~~~~~is~~q~~~Gf~rv~e~ldDi~lDvP~A~~~ 312 (640)
--||+.+...=+++ =.+++++.|+--..-+.++|-+++.++|....+...|=..+...||..
T Consensus 42 NYvK~~li~~P~kKkYsr~qla~li~I~~lK~vlsi~dI~~ll~~~~~~~~~~~~~~~~~Y~~ 104 (105)
T PF08876_consen 42 NYVKRGLIPPPIKKKYSREQLAYLIVISILKQVLSIDDIKKLLDLQFNNYEDDEISLEDAYNY 104 (105)
T ss_pred HHHhcccCCCcccCccCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccccCCCHHHHHhc
Confidence 34555555444444 368899999988888899999999999999999988777788777765
No 37
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=32.69 E-value=8.1e+02 Score=28.09 Aligned_cols=281 Identities=11% Similarity=0.085 Sum_probs=170.7
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhhhh-hhhcchhhHHHHHHHHHHHHHh---
Q 006556 86 PYFIKRLVSMAMDRHDKEKEMASVLLSALYA---DVISPDQIRDGFVILLESAD-DLAVDILDAVDILALFVARAVV--- 158 (640)
Q Consensus 86 ~~~v~~~i~~aLdr~~~eREl~s~LLs~L~~---~~ls~~~i~~Gf~~lL~~l~-Dl~lDiP~a~~~la~fiAraV~--- 158 (640)
+.-+..+|...+.........++++++-|.. +.+...++..-++.++...+ .+....|.-.++-+..+..-|.
T Consensus 155 ~it~~~Fi~~~~~~~~l~~t~~~~~v~~l~~~~~~yl~q~df~~~Lqeli~Thpl~~l~~~pEf~~~Y~~tvi~rIFy~~ 234 (493)
T KOG2562|consen 155 HITRDKFINYWMRGLMLTHTRLEQFVNLLIQAGCSYLRQDDFKPYLQELIATHPLEFLDEEPEFQERYAETVIQRIFYYL 234 (493)
T ss_pred ceeHHHHHHHHHhhhhHHHHHHHHHHHHHhccCccceeccccHHHHHHHHhcCCchhhccChhHHHHHHHHHhhhhheee
Confidence 4446677888888888899999999999985 78999999999999999999 6666778888887777666654
Q ss_pred ----cCCCChhhhhhhhhcCC-CCchHHHHHHHHHhhcccCCCchhHHhhhhc---CCC-CCCHHHHHHHHHHHHHHHHh
Q 006556 159 ----DDILPPAFLTRAKKTLP-AASKGFQVIQTAEKSYLSAPHHAELVERRWG---GST-HITVEEVKKKIADLLREYVE 229 (640)
Q Consensus 159 ----d~~l~~~~l~~~~~~~~-~~~~g~~~l~~a~~~lLs~~~~~~rl~~~Wg---g~~-~~~~~el~~ki~~lL~EY~~ 229 (640)
.|+++...+........ ....-.+-++.+ ..+.|..|...-..+.|. +.+ .+..+++++--+..+-+-+.
T Consensus 235 nrs~tG~iti~el~~snll~~l~~l~eEed~nq~-~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~tlt~~iv 313 (493)
T KOG2562|consen 235 NRSRTGRITIQELLRSNLLDALLELDEEEDINQV-TRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHTLTERIV 313 (493)
T ss_pred CCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhh-hhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhccchhhHHH
Confidence 56666655554321100 000000112222 245566787777888996 333 34677887776666664444
Q ss_pred cCCHHHHHHHHHHhCCC--cchHHHHHHHHHHHhccCCchHHHHHHHHH--HHHcCCCCHHHHHHHHHHHhhcccccccc
Q 006556 230 SGDAFEACRCIRELGVS--FFHHEVVKRALVLAMEIRTAEPLILKLLKE--AAEEGLISSSQMAKGFARLEESLDDLALD 305 (640)
Q Consensus 230 s~D~~EA~~cl~EL~~p--~fhhe~V~~ai~~alE~~~~~~~v~~LL~~--L~~~~~is~~q~~~Gf~rv~e~ldDi~lD 305 (640)
-+=+. +++-..-...- -=+..||+ .++|+|.++....+--.++- |-..|++|...+.-=|......|+++..+
T Consensus 314 dRIFs-~v~r~~~~~~eGrmdykdFv~--FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e 390 (493)
T KOG2562|consen 314 DRIFS-QVPRGFTVKVEGRMDYKDFVD--FILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQE 390 (493)
T ss_pred HHHHh-hccccceeeecCcccHHHHHH--HHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCC
Confidence 33222 22221111111 11345655 34678866444433333332 44899999999999999999999999987
Q ss_pred ccchHHHHHHHHHHHH--hcCCCChhhhhhhccCC-----------------cc------cCcchhHHHHHHHHHHHHHH
Q 006556 306 IPSARNLFQSIVPVAI--SEGWLDASFMKSLGEDG-----------------RV------QQEDEKVKRYKEEVVTIIHE 360 (640)
Q Consensus 306 vP~A~~~l~~~v~~~~--~~g~l~~~~~~~~~~~~-----------------~~------~~~~~~~ee~~k~~~~il~E 360 (640)
-=--...++++.+-.. ..|.++..-.+...-.+ |+ ..+.|+..++.+-+..=-..
T Consensus 391 ~l~fed~l~qi~DMvkP~~~~kItLqDlk~skl~~~v~n~l~nl~kfm~~E~RE~~~~~qd~Enp~~tdwdr~a~~ey~~ 470 (493)
T KOG2562|consen 391 ALPFEDALCQIRDMVKPEDENKITLQDLKGSKLAGTVFNILFNLNKFMAHETREPFLIRQDRENPTLTDWDRFADREYDR 470 (493)
T ss_pred cccHHHHHHHHHHHhCccCCCceeHHHHhhccccchhhhhhccHHHHHHHhhhhhhhhhccccCCChhHHHHHHHHHHHH
Confidence 3333666677666553 34666654444422211 11 23346666666665544444
Q ss_pred hhcCCCHHHH
Q 006556 361 YFLSDDIPEL 370 (640)
Q Consensus 361 Yf~~~D~~E~ 370 (640)
|.-..|++++
T Consensus 471 l~~ee~~~~~ 480 (493)
T KOG2562|consen 471 LSAEEDVEES 480 (493)
T ss_pred HHhhhccccC
Confidence 4444455554
No 38
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=32.60 E-value=57 Score=41.27 Aligned_cols=86 Identities=22% Similarity=0.442 Sum_probs=53.1
Q ss_pred CchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhccccccccccch-----HHHHHHHHHHHHhcCCCChhhhhh---hcc
Q 006556 265 TAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSA-----RNLFQSIVPVAISEGWLDASFMKS---LGE 336 (640)
Q Consensus 265 ~~~~~v~~LL~~L~~~~~is~~q~~~Gf~rv~e~ldDi~lDvP~A-----~~~l~~~v~~~~~~g~l~~~~~~~---~~~ 336 (640)
++|+..-++|+.|--.|++-+ +| +.|+.+|.|.. |.++.+++.-.-++ ..|+.. +.+
T Consensus 2901 kdrekaqdi~kflqing~~vs----rg-------~kdleld~~siekrfay~flkkiikyvd~a----~e~i~~~d~i~s 2965 (5019)
T KOG2243|consen 2901 KDREKAQDIFKFLQINGIAVS----RG-------FKDLELDAPSIEKRFAYKFLKKIIKYVDEA----HEFIAEFDAIGS 2965 (5019)
T ss_pred hhHHHHHHHHHHhhcccEEec----cc-------ccccccCchhHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcccc
Confidence 457777888988888887533 33 46889999975 44444444322111 234443 345
Q ss_pred CCcc-cCc-chhHHHHHHHHHHHHHHhhcCC
Q 006556 337 DGRV-QQE-DEKVKRYKEEVVTIIHEYFLSD 365 (640)
Q Consensus 337 ~~~~-~~~-~~~~ee~~k~~~~il~EYf~~~ 365 (640)
+|+- ..+ +...+=|.|.+-++|..||.+-
T Consensus 2966 ~gk~e~~p~dqeikffakv~lplidqyf~~h 2996 (5019)
T KOG2243|consen 2966 RGKGEHFPRDQEIKFFAKVLLPLIDQYFKNH 2996 (5019)
T ss_pred CCCcCCCchHHHHHHHHHHHHHHHHHHHhhc
Confidence 5533 222 3445667888999999999875
No 39
>KOG1831 consensus Negative regulator of transcription [Transcription]
Probab=32.05 E-value=8.5e+02 Score=31.65 Aligned_cols=184 Identities=16% Similarity=0.179 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHh---ccCChHHHHHHHHHHHhh------------hhhhhhchhchHHHHHHHHHHHHHhccCCchhhhH
Q 006556 403 EMASVLLSALHI---EIFSTEDIVNGFVMLLES------------AEDTALDILDASNELALFLARAVIDDVLAPLNLEE 467 (640)
Q Consensus 403 El~s~LLs~L~~---~~ls~~~i~~gf~~lL~~------------l~Dl~lDiP~a~~~la~fiARaV~dd~l~~~~l~~ 467 (640)
.+++-+.+..+. ..-+.++|..++.++|+. ......++|.--++.-..+-.++...++.+..+..
T Consensus 903 hli~~~V~~~~~~l~~~~~~~~I~~i~m~iL~~ic~~~qk~~~~~vs~a~s~~~~~~e~n~~~~~~L~~~~l~~~~~vd~ 982 (1591)
T KOG1831|consen 903 HLISGLVSYFMKNLELDFSTEKIFKIIMEILDNICRFIQKAGVRKVSEAISSSRSSLEYNIEKAEHLILSLLLDSGHVDK 982 (1591)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhchHHHHhhHHHHHHHHHHhccChhhHHH
Confidence 344445554232 257889999999999988 55556678888888888888899999999998887
Q ss_pred hhccCCCCCcHHHHHHHHHHHHhcccccccccc-eecCCCCcchHHHHHHHHHHHHHHHhccCHHHHHHHHHhhCCCCcc
Q 006556 468 ISSKLPPNCSGSETVRVARSLIAARHAGERLLR-CWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFN 546 (640)
Q Consensus 468 ~~~~~~~~~~g~~~l~~a~~~L~~~h~~~rl~~-~Wg~~~g~~~~~~k~ki~~ll~EY~~s~D~~EA~~cv~eL~~p~fh 546 (640)
+.....++..-..+..-+..+|...-|++++.. .|..--..+.+++-+ |.+...-| -|..|=+...-+..+-|+-
T Consensus 983 ~l~~amDs~~n~~vi~f~iell~~~~~~dnvi~~~~~~~~~~t~E~~~r-i~q~v~s~---~~~~g~~~~~~~~~v~~~~ 1058 (1591)
T KOG1831|consen 983 HLAKAMDSGGNQEVIAFLIELLRIAYGGDNVIADEWKNLFKETKEELFR-ILQSVESS---EDKSGECASLCDYIVEHAI 1058 (1591)
T ss_pred HHHHHhccCCChHHHHHHHHHHHHhccCcchhhhhhhhhhhhHHHHHHH-HHHHHhcc---cccchhhhhHHHHHHHhcc
Confidence 655433333234577788888887777766655 444222223444444 44444433 3333322222222232222
Q ss_pred h----------------------HHHHHHHHHHhccC---chHHHHHHHHHHHcCCCCHHHHHhHHHHH
Q 006556 547 H----------------------EVVKKALVMAMEKK---NDRMLDLLQECFSEGLITTNQMTKGFTRI 590 (640)
Q Consensus 547 h----------------------elV~~ai~~alE~~---~~~~~~LL~~l~~~~~vs~~q~~~Gf~rv 590 (640)
| |+|-..-+.-.-.. .+.+...++.+...|+++.+|...-|-|-
T Consensus 1059 k~~s~~~~m~~~~~~~~~lt~K~~~v~~~Wv~L~~~~~~~~~s~~~fi~ql~~~GVls~dd~ltqFfr~ 1127 (1591)
T KOG1831|consen 1059 KSGSSADFMFRRMDDKQKLTEKTEIVFLEWVILLNDSRKNDESLAAFIQQLNEIGVLSTDDLLTQFFRA 1127 (1591)
T ss_pred CCCCchhHHHHhcCcchhhhhHHHHHHHHHHHHHhccccchHHHHHHHHHHHHcCcccchHHHHHHHHh
Confidence 1 22222222222221 23578889999999999999998888764
No 40
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=31.85 E-value=3.2e+02 Score=26.05 Aligned_cols=117 Identities=15% Similarity=0.089 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHcCCCC---CchHHHHHHHHHhhcCChhhHHHHHHHHHHHHhc-c-CChHHHHHHH
Q 006556 352 EEVVTIIHEYFLSDDIPELIRSLEDLGAPE---FNPIFLKKVITLAMDRKNREKEMASVLLSALHIE-I-FSTEDIVNGF 426 (640)
Q Consensus 352 k~~~~il~EYf~~~D~~E~~~~l~el~~p~---~~~~~v~~~i~~aldr~~~eREl~s~LLs~L~~~-~-ls~~~i~~gf 426 (640)
|+++.++...- .++.+.++..+..+.... ....+++.+++.|.... .-..+.++|.+.|+.. . --...+...+
T Consensus 2 r~v~~~lnklt-~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~-~~~~~~a~l~~~l~~~~~~~f~~~ll~~~ 79 (209)
T PF02854_consen 2 RKVRGILNKLT-PSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEP-NFSPLYARLCAALNSRFPSEFRSLLLNRC 79 (209)
T ss_dssp HHHHHHHHHCS-STTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSG-GGHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred chHHHHHHHCC-HHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCc-hHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 45556555554 677777777777766543 66677777777776665 5566777787777754 2 1123333333
Q ss_pred HHHHhh------hhhhhhchhchHHHHHHHHHHHHHhccCCchhhhHhhc
Q 006556 427 VMLLES------AEDTALDILDASNELALFLARAVIDDVLAPLNLEEISS 470 (640)
Q Consensus 427 ~~lL~~------l~Dl~lDiP~a~~~la~fiARaV~dd~l~~~~l~~~~~ 470 (640)
..-+.. .++..--.-.-..-+..|+|-...-++++...+-+...
T Consensus 80 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l~ 129 (209)
T PF02854_consen 80 QEEFEERYSNEELEENRQSSKQRRRGNIRFLAELFNFGVVSEKIIFDILR 129 (209)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhhhhhHHHhhHhhccccchhHHHHHH
Confidence 443333 23333333344556678888888888888887776433
No 41
>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568. This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.
Probab=31.18 E-value=2e+02 Score=24.01 Aligned_cols=48 Identities=21% Similarity=0.463 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHHHhc--C-CCHHHHHHHHHHhCCCCChHHHHHHHHH
Q 006556 47 DPLDDYKKAVASIIEEYFS--T-GDVEVAASDLRELGSSEYHPYFIKRLVS 94 (640)
Q Consensus 47 ~s~ee~~k~~~~il~EYf~--~-~D~~Ea~~~l~eL~~p~~~~~~v~~~i~ 94 (640)
-..++|++.+..+|.+-=- . .+++|-..|.=.||.+.+|..++.-+..
T Consensus 9 DPy~DFr~SM~EMI~~~~i~~~w~~LeeLL~cYL~LN~~~~H~~Iv~AF~d 59 (66)
T TIGR01568 9 DPYEDFRRSMEEMIEERELEADWKELEELLACYLDLNPKKSHRFIVRAFVD 59 (66)
T ss_pred ChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCchhhhHHHHHHHH
Confidence 4568999999888887633 2 4689999999999999998888876654
No 42
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=30.30 E-value=4.6e+02 Score=30.62 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCC-ChHHHHHHHHHHhcCCChhHHHHHHHHHHHHHh-CCCCHHHHH
Q 006556 48 PLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSE-YHPYFIKRLVSMAMDRHDKEKEMASVLLSALYA-DVISPDQIR 125 (640)
Q Consensus 48 s~ee~~k~~~~il~EYf~~~D~~Ea~~~l~eL~~p~-~~~~~v~~~i~~aLdr~~~eREl~s~LLs~L~~-~~ls~~~i~ 125 (640)
+.-.|++++--.| -++-|.+||+.-|-.+++|+ ....++..+|........=+| .-+-|-.-+|. +..=.+.|.
T Consensus 450 Nlv~frr~IYLti---~SSldfeEaaHKLLKmkip~~q~~elc~mii~cc~QerTy~k-FYglL~eRfc~l~r~~q~~fe 525 (739)
T KOG2140|consen 450 NLVNFRRTIYLTI---QSSLDFEEAAHKLLKMKIPESQEKELCNMIIDCCAQERTYEK-FYGLLGERFCMLHREWQEAFE 525 (739)
T ss_pred hhHHhhhhheeee---eccCcHHHHHHHHHhccCCchhhHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3445555542222 36779999999999999998 778888888887655443332 33334444444 434456677
Q ss_pred HHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHhcCCCChhhhhhhhh
Q 006556 126 DGFVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKK 172 (640)
Q Consensus 126 ~Gf~~lL~~l~Dl~lDiP~a~~~la~fiAraV~d~~l~~~~l~~~~~ 172 (640)
+-|+.-.+.+.+++.+=- -.+|.|+|+.+.-+.||..-++..+.
T Consensus 526 ~~f~q~YstIhr~EtnkL---RnlakffahLlstd~lpw~vl~~ikL 569 (739)
T KOG2140|consen 526 KCFKQQYSTIHRYETNKL---RNLAKFFAHLLSTDALPWDVLACIKL 569 (739)
T ss_pred HHHHHHHHHHHHHhHHHH---HHHHHHHHHHhcccccchHHHHHhhc
Confidence 778777788888876543 46899999999999999988877654
No 43
>PF08876 DUF1836: Domain of unknown function (DUF1836); InterPro: IPR014975 This group of proteins are functionally uncharacterised.
Probab=29.89 E-value=36 Score=30.90 Aligned_cols=61 Identities=16% Similarity=0.250 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhccC---chHHHHHHHHHHHcCCCCHHHHHhHHHHHhhccchhhccccchHHHH
Q 006556 548 EVVKKALVMAMEKK---NDRMLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKF 608 (640)
Q Consensus 548 elV~~ai~~alE~~---~~~~~~LL~~l~~~~~vs~~q~~~Gf~rv~~~l~Di~lDvP~A~~~l 608 (640)
--||++++..-+++ .++++.|+-=..-+.++|-+++.+||....+...|-..+...||..|
T Consensus 42 NYvK~~li~~P~kKkYsr~qla~li~I~~lK~vlsi~dI~~ll~~~~~~~~~~~~~~~~~Y~~f 105 (105)
T PF08876_consen 42 NYVKRGLIPPPIKKKYSREQLAYLIVISILKQVLSIDDIKKLLDLQFNNYEDDEISLEDAYNYF 105 (105)
T ss_pred HHHhcccCCCcccCccCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccccCCCHHHHHhcC
Confidence 45677666555554 45788888888889999999999999999999877777777777654
No 44
>PF07149 Pes-10: Pes-10; InterPro: IPR009819 This family consists of several Caenorhabditis elegans pes-10 and related proteins. Members of this family are typically around 400 residues in length. The function of this family is unknown.
Probab=29.54 E-value=3.9e+02 Score=29.58 Aligned_cols=94 Identities=17% Similarity=0.244 Sum_probs=64.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHH---HHhCCCC--ChHHHHHHHHHHhcCCChhHHHHHHHHHHHHHh--CCCCHHHHHHHH
Q 006556 56 VASIIEEYFSTGDVEVAASDL---RELGSSE--YHPYFIKRLVSMAMDRHDKEKEMASVLLSALYA--DVISPDQIRDGF 128 (640)
Q Consensus 56 ~~~il~EYf~~~D~~Ea~~~l---~eL~~p~--~~~~~v~~~i~~aLdr~~~eREl~s~LLs~L~~--~~ls~~~i~~Gf 128 (640)
+.-.+.++..+||..-...++ .+...|- |+-+=+..+|. +...+.+-|..|+..+.. ..-=..+-.++|
T Consensus 212 ~M~~La~~iksgn~~~I~~AI~~~~~~~~pL~lyrKYeI~~LI~----~~~~~~~~A~~L~~~I~~~ee~~m~~e~~E~F 287 (370)
T PF07149_consen 212 CMRNLAQSIKSGNEEKISAAIKFFGEFEFPLELYRKYEIQRLIE----KHGIHNEDAMDLIDKIEELEEEEMADEKLEAF 287 (370)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH----HhccchhHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 344578888999876655444 4544443 33222333333 455667788888888864 333445567899
Q ss_pred HHHHhhhhhhhcchhhHHHHHHHHH
Q 006556 129 VILLESADDLAVDILDAVDILALFV 153 (640)
Q Consensus 129 ~~lL~~l~Dl~lDiP~a~~~la~fi 153 (640)
++++..........+.+.+++..|+
T Consensus 288 ~~fl~~~~~~~~~~d~vm~vl~~yl 312 (370)
T PF07149_consen 288 KEFLKETMEENEVSDSVMEVLMGYL 312 (370)
T ss_pred HHHHHhhcccCCCcHHHHHHHHHHh
Confidence 9999988888889999999999988
No 45
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=29.10 E-value=4.6e+02 Score=26.79 Aligned_cols=90 Identities=21% Similarity=0.255 Sum_probs=53.3
Q ss_pred HHHHHhcC---CCChhhhhhhhhcCCC--CchHHHHHHHHHh-hcccCCCchhHHhhhhcCCCCCCHHHHHHHHHHHH-H
Q 006556 153 VARAVVDD---ILPPAFLTRAKKTLPA--ASKGFQVIQTAEK-SYLSAPHHAELVERRWGGSTHITVEEVKKKIADLL-R 225 (640)
Q Consensus 153 iAraV~d~---~l~~~~l~~~~~~~~~--~~~g~~~l~~a~~-~lLs~~~~~~rl~~~Wgg~~~~~~~el~~ki~~lL-~ 225 (640)
+||.+.++ -+| ........ +|+ -..+-.+|..|.. .-+...-|-.|+.+.||=.+..+.+++++....++ +
T Consensus 92 ~~~~l~e~~~g~vP-~~~~eL~~-LPGVGrKTAnvVL~~a~g~p~i~VDTHV~Rvs~R~gl~~~~~p~~ve~~L~~~iP~ 169 (211)
T COG0177 92 LARILLEKFGGEVP-DTREELLS-LPGVGRKTANVVLSFAFGIPAIAVDTHVHRVSNRLGLVPGKTPEEVEEALMKLIPK 169 (211)
T ss_pred HHHHHHHHcCCCCC-chHHHHHh-CCCcchHHHHHHHHhhcCCCcccccchHHHHHHHhCCCCCCCHHHHHHHHHHHCCH
Confidence 56666655 444 44444433 344 1223334555431 11223345679999999777888899988888877 5
Q ss_pred HHHhcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHh
Q 006556 226 EYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAM 261 (640)
Q Consensus 226 EY~~s~D~~EA~~cl~EL~~p~fhhe~V~~ai~~al 261 (640)
||.. ++||-+|.-+=..-.
T Consensus 170 ~~~~-----------------~~h~~lI~~GR~iC~ 188 (211)
T COG0177 170 ELWT-----------------DLHHWLILHGRYICK 188 (211)
T ss_pred HHHH-----------------HHHHHHHHhhhhhcc
Confidence 5543 578888776544433
No 46
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=28.47 E-value=1.6e+02 Score=24.12 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=37.4
Q ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHhccCchH---HHHHHHHHHHcCCCCHHHHH
Q 006556 531 SEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDR---MLDLLQECFSEGLITTNQMT 584 (640)
Q Consensus 531 ~EA~~cv~eL~~p~fhhelV~~ai~~alE~~~~~---~~~LL~~l~~~~~vs~~q~~ 584 (640)
+--..-+.+++. .+++|..|+..++++.... +-..|+...++|+-|.+|..
T Consensus 19 ~~i~~~~~~~~~---~~evI~~ai~~a~~~~~~~~~Yi~~Il~~W~~~gi~T~e~~~ 72 (73)
T TIGR01446 19 EDLKYWLDEFGN---SPELIKEALKEAVSNNKANYKYIDAILNNWKNNGIKTVEDVE 72 (73)
T ss_pred HHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHh
Confidence 333344455543 4899999999999865332 57888899999999999874
No 47
>PF10265 DUF2217: Uncharacterized conserved protein (DUF2217); InterPro: IPR019392 This is a family of conserved proteins varying in length from 500-600 residues. Their function is not known.
Probab=28.40 E-value=1.4e+02 Score=34.38 Aligned_cols=103 Identities=17% Similarity=0.301 Sum_probs=70.5
Q ss_pred CHHHHHHHHHhhCCCCc--chH---------------HHHHHHHHHhccCchHH------HHHHHHHHHcCCCCHHHHHh
Q 006556 529 VVSEACQCIRDLGMPFF--NHE---------------VVKKALVMAMEKKNDRM------LDLLQECFSEGLITTNQMTK 585 (640)
Q Consensus 529 D~~EA~~cv~eL~~p~f--hhe---------------lV~~ai~~alE~~~~~~------~~LL~~l~~~~~vs~~q~~~ 585 (640)
=++||.++++|=++|.. +-| =|++|....+.....++ .++|..|....-=++..+..
T Consensus 264 lYeeAl~lveeg~V~cR~LRTEl~~C~sD~dfLAKLHCvRqAf~~~l~d~~~r~~~~~~Gr~~l~~ll~~a~~~p~~f~~ 343 (514)
T PF10265_consen 264 LYEEALKLVEEGKVPCRTLRTELLGCESDQDFLAKLHCVRQAFQVLLQDESNRVWLADVGRQILSDLLVKADKDPKDFLE 343 (514)
T ss_pred HHHHHHHHHHcCCCccccchhHHhccCchHHHHHHHHHHHHHHHHHhcCchhhhhHHHhhHHHHHHHHHHcCCCcHHHHH
Confidence 35778888888777764 112 47888888887764432 46667777777788999999
Q ss_pred HHHHHhhccc-----------------------hhhccc--cchHHHHHH---HHHHHHHcCCCCCccccCccc
Q 006556 586 GFTRIKDGLD-----------------------DLALDI--PNAKEKFTF---YVEYARKKGWLLPAFGSCVAD 631 (640)
Q Consensus 586 Gf~rv~~~l~-----------------------Di~lDv--P~A~~~l~~---~v~~~~~~g~l~~~~~~~~~~ 631 (640)
+|.++++.+. |++||. =+|.+-|+. =|...++..||+.+|+..|-+
T Consensus 344 ~ye~m~~f~~~~~~~~~~~~EL~~rgV~~~~fyDvvlDfillDaFedL~~PPssv~aV~~Nrwls~sfKetal~ 417 (514)
T PF10265_consen 344 AYEEMMEFLQDPENWDTMEEELESRGVKCMNFYDVVLDFILLDAFEDLENPPSSVLAVVQNRWLSDSFKETALA 417 (514)
T ss_pred HHHHHHHHHcCcccHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHhhhcCCcHHHHHHHHcchhhhhhhhhccC
Confidence 9999999887 455552 233333322 355677888999998886644
No 48
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=28.32 E-value=83 Score=20.70 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=20.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhC
Q 006556 221 ADLLREYVESGDAFEACRCIRELG 244 (640)
Q Consensus 221 ~~lL~EY~~s~D~~EA~~cl~EL~ 244 (640)
+.+|.=|...|+.++|.+.++++.
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 568888999999999999998873
No 49
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=28.25 E-value=3.8e+02 Score=32.66 Aligned_cols=170 Identities=15% Similarity=0.162 Sum_probs=97.9
Q ss_pred hhhchhchHHHHHHHHHHHHHh-------ccCCchhhhHhhccCCCCCcHHHHHHHHHHHHhcccccccccceecCCC-C
Q 006556 436 TALDILDASNELALFLARAVID-------DVLAPLNLEEISSKLPPNCSGSETVRVARSLIAARHAGERLLRCWGGGT-G 507 (640)
Q Consensus 436 l~lDiP~a~~~la~fiARaV~d-------d~l~~~~l~~~~~~~~~~~~g~~~l~~a~~~L~~~h~~~rl~~~Wg~~~-g 507 (640)
+.-|.|..-.++..++---..- -.-++.|+....+-+. ...--+|+...+.-|.. ++.--.|-+|+.| |
T Consensus 110 l~K~~~ek~kmis~~l~~k~~~~~s~ne~~~~s~eyV~~l~~gl~-t~~l~~CleslRVsL~~--npVSwvn~Fgvegl~ 186 (1102)
T KOG1924|consen 110 LDKDLPEKRKMISQYLQMKMMIRKSDNEAKGSSPEYVVELRSGLS-TKKLLECLESLRVSLTS--NPVSWVNKFGVEGLG 186 (1102)
T ss_pred hhcCchHHHHHHHHHHHHHHHHhhhhhhhccCChHHHHHHHcccc-cccHHHHHHHHhhhhcC--CccHHHHHhhhhhHH
Confidence 4557888888887766432221 1234445544333211 11122455555544542 2333446677654 4
Q ss_pred cchHHHHHHHHHHHHHHHhccCHHHHHHHHHhhCCCCcchHHHH------HHHHHHhccCch-HHHHHHHHHHHcCCCCH
Q 006556 508 WAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVK------KALVMAMEKKND-RMLDLLQECFSEGLITT 580 (640)
Q Consensus 508 ~~~~~~k~ki~~ll~EY~~s~D~~EA~~cv~eL~~p~fhhelV~------~ai~~alE~~~~-~~~~LL~~l~~~~~vs~ 580 (640)
+-.+.+++--.+=..+-+.+....|+.||++.+=-.+|--.+|- -.+.-|+..... .|++.++-|+.-.||-.
T Consensus 187 ll~~~Lkrl~dsk~~~~~~~k~~~eiIrClka~mNn~~Gl~~vL~~e~~lllla~aldpr~pnmm~dvvkllsalciV~e 266 (1102)
T KOG1924|consen 187 LLLDVLKRLRDSKVGSKLDIKNLQEIIRCLKAFMNNKFGLVLVLRRERSLLLLARALDPREPNMMTDVVKLLSALCIVGE 266 (1102)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccccceeeeecCCccHHHHHHhcCccCccHHHHHHHHHHHHheeeh
Confidence 33566666333333333577788999999999866666432221 112235555433 57888888888888887
Q ss_pred HHHHhHHHHHhhccchhhccccchHHHHHHHHH
Q 006556 581 NQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVE 613 (640)
Q Consensus 581 ~q~~~Gf~rv~~~l~Di~lDvP~A~~~l~~~v~ 613 (640)
..|..+|.+.|.-++=- ++-+.|.-+|+
T Consensus 267 ---e~~~ekvl~aiT~~ae~--~~veRF~piv~ 294 (1102)
T KOG1924|consen 267 ---ENGLEKVLEAITTIAEA--KPVERFRPIVE 294 (1102)
T ss_pred ---hhHHHHHHHHHHHHHhh--cchhhhhhHHH
Confidence 78889998888877643 44555554444
No 50
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=27.62 E-value=79 Score=20.52 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhC
Q 006556 221 ADLLREYVESGDAFEACRCIRELG 244 (640)
Q Consensus 221 ~~lL~EY~~s~D~~EA~~cl~EL~ 244 (640)
+.++.-|...|+.++|.+.++++.
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHHh
Confidence 578899999999999999998874
No 51
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=25.73 E-value=5e+02 Score=28.07 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHH
Q 006556 211 ITVEEVKKKIADLLREYVESGDAFE 235 (640)
Q Consensus 211 ~~~~el~~ki~~lL~EY~~s~D~~E 235 (640)
.+.+++..+++.||++++.+..+.+
T Consensus 117 ~~~~~~~~~i~~Lid~~I~s~~v~~ 141 (335)
T PF11867_consen 117 PDIKEVEEKIRQLIDESIASEGVVD 141 (335)
T ss_pred CCHHHHHHHHHHHHHHHHhcccchh
Confidence 6789999999999999998877654
No 52
>PLN02591 tryptophan synthase
Probab=25.72 E-value=2.1e+02 Score=29.89 Aligned_cols=89 Identities=20% Similarity=0.284 Sum_probs=64.6
Q ss_pred HHhCCCcch----HHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCC------HHH-HHHHHHHHhhccccccc-----
Q 006556 241 RELGVSFFH----HEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLIS------SSQ-MAKGFARLEESLDDLAL----- 304 (640)
Q Consensus 241 ~EL~~p~fh----he~V~~ai~~alE~~~~~~~v~~LL~~L~~~~~is------~~q-~~~Gf~rv~e~ldDi~l----- 304 (640)
-||+.|+-- --++++|-..||++...-+.+.++++.+.++--+. -+. +..|++++++.+.+.-+
T Consensus 33 iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~Gvii 112 (250)
T PLN02591 33 IELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVV 112 (250)
T ss_pred EEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEe
Confidence 356777643 46899999999998866778899999887542122 122 45599999999988887
Q ss_pred -cccchHHHHHHHHHHHHhcCCCChhhh
Q 006556 305 -DIPSARNLFQSIVPVAISEGWLDASFM 331 (640)
Q Consensus 305 -DvP~A~~~l~~~v~~~~~~g~l~~~~~ 331 (640)
|+| ++-...+...|...|+=.--++
T Consensus 113 pDLP--~ee~~~~~~~~~~~gl~~I~lv 138 (250)
T PLN02591 113 PDLP--LEETEALRAEAAKNGIELVLLT 138 (250)
T ss_pred CCCC--HHHHHHHHHHHHHcCCeEEEEe
Confidence 888 4888888888888776553333
No 53
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=25.63 E-value=4.5e+02 Score=25.05 Aligned_cols=28 Identities=11% Similarity=0.004 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHhcCCCChhhhhhhh
Q 006556 144 DAVDILALFVARAVVDDILPPAFLTRAK 171 (640)
Q Consensus 144 ~a~~~la~fiAraV~d~~l~~~~l~~~~ 171 (640)
..+.-+..|+|....-++++...+-+..
T Consensus 94 ~~~~~~i~fl~eL~~~~~i~~~~i~~~l 121 (200)
T smart00543 94 QRRLGLVRFLGELYNFQVLTSKIILELL 121 (200)
T ss_pred hhHHhHHHHHHHHHHcccCcHHHHHHHH
Confidence 5567888999999999999987766543
No 54
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=24.86 E-value=5.1e+02 Score=31.29 Aligned_cols=157 Identities=13% Similarity=0.079 Sum_probs=91.9
Q ss_pred hcCCCHHHHHHHHHHcCCCC-CchHHHHHHHHHhhcCChhhHHHHHHHHHHHHhccCChHHHHHHHHH-HHhhhhhhhhc
Q 006556 362 FLSDDIPELIRSLEDLGAPE-FNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVM-LLESAEDTALD 439 (640)
Q Consensus 362 f~~~D~~E~~~~l~el~~p~-~~~~~v~~~i~~aldr~~~eREl~s~LLs~L~~~~ls~~~i~~gf~~-lL~~l~Dl~lD 439 (640)
-++.|..++...|--|..+. .-++++..+|.+.|.-|- .--.-+.|.+-+|.- ...+...|+= +-+.+.|++--
T Consensus 629 msaeDyiDAFEklLkL~LK~~Q~rEI~~VllhC~l~EK~-yNpfYa~lA~KfCe~---~~~~~~tfQF~~WD~f~ele~l 704 (822)
T KOG2141|consen 629 MSAEDYIDAFEKLLKLSLKGKQEREIARVLLHCCLNEKT-YNPFYALLALKFCEF---NKNLKKTFQFALWDRFKELEQL 704 (822)
T ss_pred ecchHHHHHHHHHHhccCCCcchHHHHHHHHHHHhhhcc-cchHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHhhhc
Confidence 34567777777777777765 778888888888887663 334445555566642 2344555554 33344444443
Q ss_pred hhchHHHHHHHHHHHHHhccCCchhhhHhhccCCCCCcHHHHHHHHHHHHhcccccccccceecCCC----CcchHHHHH
Q 006556 440 ILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVRVARSLIAARHAGERLLRCWGGGT----GWAVEDAKD 515 (640)
Q Consensus 440 iP~a~~~la~fiARaV~dd~l~~~~l~~~~~~~~~~~~g~~~l~~a~~~L~~~h~~~rl~~~Wg~~~----g~~~~~~k~ 515 (640)
-|.=-.-||+|+|..|+...++++-+..+.-. .-+..+...+...-.-|-.-|. ..++|-.-. -...+.+.+
T Consensus 705 s~~ri~nLa~l~a~Li~~~~lsLtVLK~Vdfm-~l~~~~~~fl~~~l~~l~l~~~---~~~v~~~ftr~~kn~k~~~l~~ 780 (822)
T KOG2141|consen 705 SLFRISNLAKLLASLISNAVLSLTVLKHVDFM-ELNARRTTFLKKLLFGLILEPE---EKDVFQLFTRVAKNTKLELLSE 780 (822)
T ss_pred chhhHhHHHHHHHHHHHhcccceeeeeeccHh-hcChHHHHHHHHHHHHHHhcch---HHHHHHHHHHHhcCHHHHHHHH
Confidence 44555779999999999999999988864332 1233344455544333333333 333443211 112455566
Q ss_pred HHHHHHHHHHh
Q 006556 516 KIMKLLEEYES 526 (640)
Q Consensus 516 ki~~ll~EY~~ 526 (640)
.++-.++.|+.
T Consensus 781 gvk~F~~~~l~ 791 (822)
T KOG2141|consen 781 GVKWFLKHYLR 791 (822)
T ss_pred HHHHHHHHHHH
Confidence 66666666653
No 55
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=24.69 E-value=4e+02 Score=23.58 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=54.3
Q ss_pred CCCChHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHh
Q 006556 81 SSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVV 158 (640)
Q Consensus 81 ~p~~~~~~v~~~i~~aLdr~~~eREl~s~LLs~L~~~~ls~~~i~~Gf~~lL~~l~Dl~lDiP~a~~~la~fiAraV~ 158 (640)
+..+...++.-++..-=|...+-|..++.-|-.+.+ ...+++..=|.++++.+-.+.-|.-.-...-|+++-|.+-
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k--~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISK--VARGEILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 344788888888988888899999999998888875 1234555566666666666666665556666666666654
No 56
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=24.47 E-value=1.5e+02 Score=25.48 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH-hCCCCC
Q 006556 47 DPLDDYKKAVASIIEEYFSTGDVEVAASDLRE-LGSSEY 84 (640)
Q Consensus 47 ~s~ee~~k~~~~il~EYf~~~D~~Ea~~~l~e-L~~p~~ 84 (640)
+|+.| +..+...|++|+.++++++-+..+.. |+.|..
T Consensus 16 L~~~E-r~~~~~~L~~Y~~~~~Vd~LV~~L~~vLdtPaK 53 (78)
T cd07347 16 LTDAE-REQVTRALERYHQERNVDDLVRDLYLVLDTPAK 53 (78)
T ss_pred CCHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHcCcHhH
Confidence 56667 66778889999999999999999988 566653
No 57
>PF13311 DUF4080: Protein of unknown function (DUF4080)
Probab=24.06 E-value=5.3e+02 Score=25.59 Aligned_cols=71 Identities=13% Similarity=0.137 Sum_probs=46.0
Q ss_pred CCCCCHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHhC-CCC-ChHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 006556 44 TISDPLDDYKK--AVASIIEEYFSTGDVEVAASDLRELG-SSE-YHPYFIKRLVSMAMDRHDKEKEMASVLLSAL 114 (640)
Q Consensus 44 ~~~~s~ee~~k--~~~~il~EYf~~~D~~Ea~~~l~eL~-~p~-~~~~~v~~~i~~aLdr~~~eREl~s~LLs~L 114 (640)
+.-+|.+|+.+ .++.+++-|+++|-....+.-|-..- .|= +...+..-+-.....+...-++-...+|-+.
T Consensus 19 t~~Ls~~ei~~Lk~~e~~le~yyNSgrF~~tl~~l~~~~~spF~ff~~l~~~~~~~g~~~~~~s~~~l~~~L~~F 93 (190)
T PF13311_consen 19 TKWLSFDEIQRLKRFEDMLEKYYNSGRFDYTLEYLLKEFGSPFDFFEALADYWEEQGYFKRSHSLEDLFEILYDF 93 (190)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCcccCCCHHHHHHHHHHH
Confidence 34488898875 79999999999999999999888753 222 4555555555555544333333333333333
No 58
>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification]
Probab=23.87 E-value=1.4e+03 Score=27.86 Aligned_cols=187 Identities=18% Similarity=0.194 Sum_probs=0.0
Q ss_pred CCCCCCCCCccccccCCCCCHHHHHHHHHHHHHHHh--cCCCHHHHHHHH------------------------------
Q 006556 29 PNYDSGEEPYQLVGATISDPLDDYKKAVASIIEEYF--STGDVEVAASDL------------------------------ 76 (640)
Q Consensus 29 Pnyds~~~~~~~~~~~~~~s~ee~~k~~~~il~EYf--~~~D~~Ea~~~l------------------------------ 76 (640)
|-.|+++|+|.... ....+-+++.|++++.|.++= ++.+++.=+..+
T Consensus 5 rr~d~edE~y~~rr-~r~~~~e~l~krl~~~i~~vg~~s~ss~e~~l~~l~~~l~~~~~~~~~~iL~~L~~ca~~lP~K~ 83 (759)
T KOG1104|consen 5 RRGDDEDENYDDRR-RRISPAETLEKRLESLIREVGEPSGSSVEDNLENLVAVLEADLENFKSKILDILNTCAVYLPEKI 83 (759)
T ss_pred ccCCcccccccccc-ccCCcHHHHHHHHHHHHHhhcCCCCCcHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcccch
Q ss_pred ------------HHhCCCC-ChHHHHHHHHHHhcCCChhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhhhhhhhcch
Q 006556 77 ------------RELGSSE-YHPYFIKRLVSMAMDRHDKEKEMASVLLSALYA-DVISPDQIRDGFVILLESADDLAVDI 142 (640)
Q Consensus 77 ------------~eL~~p~-~~~~~v~~~i~~aLdr~~~eREl~s~LLs~L~~-~~ls~~~i~~Gf~~lL~~l~Dl~lDi 142 (640)
+.-+... +...|+...=+.-=-++=-+-...-+.|++|+. +++++..+..=|..+++......
T Consensus 84 ~~yaTLvgllN~kn~~fg~~~v~~~~~~~q~sl~~~~~n~ar~llrfL~dL~~~~vl~~~sli~l~esl~~~~~e~~--- 160 (759)
T KOG1104|consen 84 TAYATLVGLLNLKNFNFGGEFVEYMIEELQESLKSGNWNEARYLLRFLSDLSNCHVLQADSLINLFESLLDAAIEEN--- 160 (759)
T ss_pred hHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhcCCccChHHHHHHHHHHHHHHHhhc---
Q ss_pred hhHHHHHHHHHHHHHhcCCCChhhhhhhhhcCCCCchHHHHHHHHHhhcccCCCchhHHhhhhcCCCCCCHHH----HHH
Q 006556 143 LDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEE----VKK 218 (640)
Q Consensus 143 P~a~~~la~fiAraV~d~~l~~~~l~~~~~~~~~~~~g~~~l~~a~~~lLs~~~~~~rl~~~Wgg~~~~~~~e----l~~ 218 (640)
+|+.=+.+..++|.. ++-++.+..... ......+.+...+.-+.-++.....+-|+|.|.+..+-+| +=+
T Consensus 161 --~Pqvr~D~~v~~vLs---~lPw~g~el~e~-~~~~~e~ll~~ie~Yl~~R~~shi~lL~vw~~~~~~~qeeyle~L~~ 234 (759)
T KOG1104|consen 161 --VPQVRRDYYVYCVLS---SLPWFGRELNEK-KPTEMEELLVYIEIYLKKRKKSHINLLNVWSGEPDHPQEEYLELLWA 234 (759)
T ss_pred --CcchhhhHHHHHHHh---ccchhhhhhccc-chHHHHHHHHHHHHHHHHhcccccchhhcCCCCCCchHHHHHHHHHH
Q ss_pred HHHHHHH
Q 006556 219 KIADLLR 225 (640)
Q Consensus 219 ki~~lL~ 225 (640)
+|+.+.+
T Consensus 235 qI~~lr~ 241 (759)
T KOG1104|consen 235 QIQKLRQ 241 (759)
T ss_pred HHHHHHh
No 59
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.34 E-value=2.2e+02 Score=29.82 Aligned_cols=100 Identities=19% Similarity=0.311 Sum_probs=69.9
Q ss_pred HHHhcC--CHHHHHHHHHH----------hCCCc----chHHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCH----
Q 006556 226 EYVESG--DAFEACRCIRE----------LGVSF----FHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISS---- 285 (640)
Q Consensus 226 EY~~s~--D~~EA~~cl~E----------L~~p~----fhhe~V~~ai~~alE~~~~~~~v~~LL~~L~~~~~is~---- 285 (640)
=|+..| |++...++++. |+.|+ .---++++|-..||++.-..+.+.++++.+.+...=++
T Consensus 16 ~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm 95 (258)
T PRK13111 16 PYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLM 95 (258)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 366665 45555565554 46776 33468999999999988556678899998884422112
Q ss_pred ---HHH-HHHHHHHhhccccccc------cccchHHHHHHHHHHHHhcCCCC
Q 006556 286 ---SQM-AKGFARLEESLDDLAL------DIPSARNLFQSIVPVAISEGWLD 327 (640)
Q Consensus 286 ---~q~-~~Gf~rv~e~ldDi~l------DvP~A~~~l~~~v~~~~~~g~l~ 327 (640)
+.+ ..|++++++.+-+.-+ |+|. +....++..|.+.|.-.
T Consensus 96 ~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~--ee~~~~~~~~~~~gl~~ 145 (258)
T PRK13111 96 TYYNPIFQYGVERFAADAAEAGVDGLIIPDLPP--EEAEELRAAAKKHGLDL 145 (258)
T ss_pred ecccHHhhcCHHHHHHHHHHcCCcEEEECCCCH--HHHHHHHHHHHHcCCcE
Confidence 444 4499999999998877 8884 77788888888877544
No 60
>PF12295 Symplekin_C: Symplekin tight junction protein C terminal; InterPro: IPR022075 This domain family is found in eukaryotes, and is approximately 180 amino acids in length. There is a single completely conserved residue P that may be functionally important. Symplekn has been localized, by light and electron microscopy, to the plaque associated with the cytoplasmic face of the tight junction-containing zone (zonula occludens) of polar epithelial cells and of Sertoli cells of testis. However, both the mRNA and the protein can also be detected in a wide range of cell types that do not form tight junctions. Careful analyses have revealed that the protein occurs in all these diverse cells in the nucleoplasm, and only in those cells forming tight junctions is it recruited, partly but specifically, to the plaque structure of the zonula occludens.
Probab=22.46 E-value=3.8e+02 Score=26.61 Aligned_cols=84 Identities=25% Similarity=0.327 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCCC---HHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChhHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Q 006556 54 KAVASIIEEYFSTGD---VEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYA-DVISPDQIRDGFV 129 (640)
Q Consensus 54 k~~~~il~EYf~~~D---~~Ea~~~l~eL~~p~~~~~~v~~~i~~aLdr~~~eREl~s~LLs~L~~-~~ls~~~i~~Gf~ 129 (640)
|++...++--|+..+ .+-.+..++.+--..-.+.+.-+-+-.++..-++=|..++.+|+.|.. ++.....+-+||-
T Consensus 74 k~~~~a~~~Cf~~~~vf~~evla~~l~ql~~~~~lP~LfmRTviq~~~~~p~L~~FV~~iL~rLi~kqvW~~~~lW~Gfi 153 (183)
T PF12295_consen 74 KKIIEALDLCFSMRDVFTQEVLASALQQLVEQPPLPLLFMRTVIQALQKYPSLRSFVSNILSRLIQKQVWKNKKLWEGFI 153 (183)
T ss_pred HHHHHHHHHHHcccccCCHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcChhHHHHHH
Confidence 344666777777765 233334444443335566666777777888899999999999999997 8999999999999
Q ss_pred HHHhhhhh
Q 006556 130 ILLESADD 137 (640)
Q Consensus 130 ~lL~~l~D 137 (640)
.-...+.-
T Consensus 154 ~C~~~~~p 161 (183)
T PF12295_consen 154 KCAKRLKP 161 (183)
T ss_pred HHHHHhhh
Confidence 88776643
No 61
>PRK15372 pathogenicity island 2 effector protein SseI; Provisional
Probab=22.36 E-value=1.4e+02 Score=31.16 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhCCC
Q 006556 222 DLLREYVESGDAFEACRCIRELGVS 246 (640)
Q Consensus 222 ~lL~EY~~s~D~~EA~~cl~EL~~p 246 (640)
+-+++||+|--..||.+||.+|--|
T Consensus 5 EKIk~FFcsTHq~EAl~CI~~LcHP 29 (292)
T PRK15372 5 EKMKEFFCSTHQTEALECIWTICHP 29 (292)
T ss_pred HHHHHHhccccHHHHHHHHHHHhCC
Confidence 4578999999999999999999544
No 62
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=20.61 E-value=4.6e+02 Score=23.20 Aligned_cols=75 Identities=16% Similarity=0.145 Sum_probs=49.7
Q ss_pred CCCCchHHHHHHHHHhhcCChhhHHHHHHHHHHHHhccCChHHHHHHHHHHHhhhhhhhhchhchHHHHHHHHHHHH
Q 006556 379 APEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAV 455 (640)
Q Consensus 379 ~p~~~~~~v~~~i~~aldr~~~eREl~s~LLs~L~~~~ls~~~i~~gf~~lL~~l~Dl~lDiP~a~~~la~fiARaV 455 (640)
+..+...+++-++..-=|...+-|..++.-|-.+.+- ..+++..=|..+++.+-.+.-|.-.-...-|.++-|.+
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~--~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV--ARGEILPYFNEIFDALCKLSADPDENVRSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh
Confidence 3457888888888888888999999999988888643 23455555555555555555555444444455555543
No 63
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=20.36 E-value=1.1e+03 Score=25.66 Aligned_cols=74 Identities=11% Similarity=0.127 Sum_probs=50.2
Q ss_pred HHHHhcCCCHHHHHHHHHHhCCCC-ChHHHHHHHHHHhcCCChhHHHHHHHHHHHHHh-CCCCHHHHH----HHHHHHHh
Q 006556 60 IEEYFSTGDVEVAASDLRELGSSE-YHPYFIKRLVSMAMDRHDKEKEMASVLLSALYA-DVISPDQIR----DGFVILLE 133 (640)
Q Consensus 60 l~EYf~~~D~~Ea~~~l~eL~~p~-~~~~~v~~~i~~aLdr~~~eREl~s~LLs~L~~-~~ls~~~i~----~Gf~~lL~ 133 (640)
.+-|...|+.+.|...++.+.... -++.+.......-+.. .+.+-+..+|..|.+ +.+++++.. .++..++.
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~--gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~ 237 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT--GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD 237 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 467888999999999888865433 4455444444444333 577888888999988 778888776 45544444
Q ss_pred hh
Q 006556 134 SA 135 (640)
Q Consensus 134 ~l 135 (640)
..
T Consensus 238 ~~ 239 (398)
T PRK10747 238 QA 239 (398)
T ss_pred HH
Confidence 43
No 64
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=20.27 E-value=7.5e+02 Score=27.88 Aligned_cols=125 Identities=24% Similarity=0.286 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHhcCCC
Q 006556 86 PYFIKRLVSMAMDRHDKEKEMASVLLSALYA---DVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDDIL 162 (640)
Q Consensus 86 ~~~v~~~i~~aLdr~~~eREl~s~LLs~L~~---~~ls~~~i~~Gf~~lL~~l~Dl~lDiP~a~~~la~fiAraV~d~~l 162 (640)
+.=|-..+...++++=++=|.+-.-|..... ..++.+-+.+.+..++..-. . +++..+-+.+|++.. +
T Consensus 265 ~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~-~-itie~I~~~Va~~y~-------v 335 (408)
T COG0593 265 PDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAGE-K-ITIEDIQKIVAEYYN-------V 335 (408)
T ss_pred CHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhcccc-c-CCHHHHHHHHHHHhC-------C
Confidence 3334444455567776666666655544432 46888888888888888777 5 888888888887764 3
Q ss_pred ChhhhhhhhhcCCCCchHHHHHHHHHhhcccC---CCchhHHhhhhcCCCCCCHHHHHHHHHHHHHH
Q 006556 163 PPAFLTRAKKTLPAASKGFQVIQTAEKSYLSA---PHHAELVERRWGGSTHITVEEVKKKIADLLRE 226 (640)
Q Consensus 163 ~~~~l~~~~~~~~~~~~g~~~l~~a~~~lLs~---~~~~~rl~~~Wgg~~~~~~~el~~ki~~lL~E 226 (640)
+.+++....... .=..++++ | .+|++ ++..-.+.+..| .++.|+-..-+||..++++
T Consensus 336 ~~~dl~s~~R~~-~i~~~Rqi---a--myL~r~lt~~Slp~IG~~Fg-rdHtTV~~a~~kI~~~~~~ 395 (408)
T COG0593 336 KVSDLLSKSRTR-NIVRPRQI---A--MYLARELTNLSLPEIGKAFG-RDHTTVLHAVRKIEQLIEE 395 (408)
T ss_pred CHHHhhcccccc-ccchHHHH---H--HHHHHHHccCcHHHHHHHhC-CCccHHHHHHHHHHHHHhc
Confidence 444443322110 00122322 2 34443 467789999999 9999999999999999876
No 65
>cd08307 Death_Pelle Death domain of the protein kinase Pelle. Death domain (DD) of the protein kinase Pelle from Drosophila melanogaster and simlar proteins. In Drosophila, interaction between the DDs of Tube and Pelle is an important component of the Toll pathway, which functions in establishing dorsoventral polarity in embryos and in mediating innate immune responses to pathogens. Tube and Pelle transmit the signal from the Toll receptor to the Dorsal/Cactus complex. Pelle also functions in photoreceptor axon targeting. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.13 E-value=1.9e+02 Score=25.95 Aligned_cols=44 Identities=23% Similarity=0.303 Sum_probs=32.5
Q ss_pred cccccceecCCCCcchHHHHHHHHHHHHHHHhccCHHHHHHHHHhhCCCCcch
Q 006556 495 GERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNH 547 (640)
Q Consensus 495 ~~rl~~~Wg~~~g~~~~~~k~ki~~ll~EY~~s~D~~EA~~cv~eL~~p~fhh 547 (640)
.+-|.+.||..+ -++.++- ++|...-.-+|.+.|+.+-.|.||+
T Consensus 53 t~eLL~~WG~~n-~Tv~~L~--------~~L~k~kl~~Am~ilk~~v~~~~h~ 96 (97)
T cd08307 53 TEELLDIWGNKN-HTITELF--------VLLYREKLFRAMRIIKDLVDPKYHY 96 (97)
T ss_pred HHHHHHHHhhcC-CCHHHHH--------HHHHHhchHHHHHHHHHhcChhccc
Confidence 456788998664 4555543 4555566789999999998899985
Done!