Query 006556
Match_columns 640
No_of_seqs 301 out of 554
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 02:44:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006556.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006556hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eiq_C Programmed cell death p 100.0 1.9E-86 6.3E-91 708.2 27.9 337 3-341 4-343 (358)
2 3eiq_C Programmed cell death p 100.0 8.7E-73 3E-77 602.9 27.3 289 342-631 45-338 (358)
3 2zu6_B Programmed cell death p 100.0 9.6E-73 3.3E-77 592.8 26.6 284 349-633 1-289 (307)
4 2zu6_B Programmed cell death p 100.0 2.3E-71 7.9E-76 582.3 26.5 289 51-341 1-292 (307)
5 2rg8_A Programmed cell death p 100.0 1.4E-42 4.7E-47 333.9 15.9 164 343-507 2-165 (165)
6 2rg8_A Programmed cell death p 100.0 1.6E-41 5.5E-46 326.4 16.5 164 45-210 2-165 (165)
7 2nsz_A Programmed cell death p 100.0 5.2E-34 1.8E-38 263.7 12.1 127 211-337 1-129 (129)
8 2ion_A PDCD4, programmed cell 100.0 1.5E-33 5E-38 267.5 12.0 132 210-341 2-137 (152)
9 2nsz_A Programmed cell death p 100.0 7.1E-33 2.4E-37 256.1 11.1 123 508-630 1-127 (129)
10 2ion_A PDCD4, programmed cell 100.0 4.8E-32 1.6E-36 257.1 11.1 124 508-631 3-130 (152)
11 3l6a_A Eukaryotic translation 100.0 7.3E-27 2.5E-31 250.6 29.5 296 47-359 6-359 (364)
12 1ug3_A EIF4GI, eukaryotic prot 99.9 3.1E-28 1.1E-32 259.2 8.5 164 45-209 3-168 (339)
13 3l6a_A Eukaryotic translation 99.9 1.4E-25 4.9E-30 240.6 17.8 266 344-623 5-330 (364)
14 1ug3_A EIF4GI, eukaryotic prot 99.9 1.4E-26 4.7E-31 246.5 9.2 164 343-506 3-168 (339)
15 4g26_A Pentatricopeptide repea 67.8 1.4E+02 0.0048 32.3 17.6 161 219-415 28-204 (501)
16 3kh1_A Predicted metal-depende 62.7 40 0.0014 32.6 10.0 81 511-622 113-199 (200)
17 3kh1_A Predicted metal-depende 50.0 26 0.00088 34.0 6.3 53 268-327 141-199 (200)
18 4b8b_A General negative regula 49.1 54 0.0018 36.8 9.3 90 48-137 443-543 (603)
19 4g26_A Pentatricopeptide repea 45.1 3.2E+02 0.011 29.4 19.3 80 219-298 142-222 (501)
20 3dad_A FH1/FH2 domain-containi 34.7 1.2E+02 0.0042 31.6 8.9 168 230-408 129-327 (339)
21 4b8b_A General negative regula 30.0 2.9E+02 0.01 31.0 11.3 88 348-435 445-543 (603)
22 1rw2_A ATP-dependent DNA helic 26.3 1.7E+02 0.006 26.9 7.5 72 212-286 50-131 (152)
23 3fp5_A Acyl-COA binding protei 24.8 75 0.0026 27.6 4.4 42 203-244 63-104 (106)
24 4fu3_A Regulation of nuclear P 22.4 1.4E+02 0.0048 26.1 6.0 121 209-336 2-127 (135)
25 1yoz_A Hypothetical protein AF 22.2 1.9E+02 0.0064 25.0 6.1 36 121-156 72-112 (116)
26 1h2v_C 80 kDa nuclear CAP bind 20.9 2.8E+02 0.0095 32.1 9.5 201 269-521 11-221 (771)
27 1q2z_A ATP-dependent DNA helic 20.7 1.2E+02 0.0042 26.6 5.1 71 213-286 20-100 (120)
28 1ddb_A Protein (BID); apoptosi 20.3 1E+02 0.0034 29.5 4.5 62 407-471 108-173 (195)
No 1
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=100.00 E-value=1.9e-86 Score=708.23 Aligned_cols=337 Identities=30% Similarity=0.465 Sum_probs=267.6
Q ss_pred ccCcccccccCcccccCCCCCCCCCCCCCCCCCCCccccccCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCC
Q 006556 3 IDGAGGKGTWGKLLDTDVESHIDRNDPNYDSGEEPYQLVGATISDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSS 82 (640)
Q Consensus 3 ~~G~ggk~~wg~~~~~~~~~~~d~~DPnyds~~~~~~~~~~~~~~s~ee~~k~~~~il~EYf~~~D~~Ea~~~l~eL~~p 82 (640)
|.|.|||||||+|++++++..+|+|||||||+++++...+..|++|++||+|++++||+|||+++|++||++|++|||+|
T Consensus 4 ~~~~~gk~~wg~~~~~~~~~~~d~~dpnyd~~~~~~~~~~~~p~ls~ee~~k~~~~ii~EYf~~~d~~Ea~~~l~eL~~p 83 (358)
T 3eiq_C 4 GSPEFGKGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPLDETAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLG 83 (358)
T ss_dssp ----------------------------------------------CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTTCC
T ss_pred CCCCCCCCcCCCCcCcCcccCCCccCCCCCCCCCCceeecCCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCc
Confidence 68999999999999988778899999999998777766666688999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHhcCCC
Q 006556 83 EYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDDIL 162 (640)
Q Consensus 83 ~~~~~~v~~~i~~aLdr~~~eREl~s~LLs~L~~~~ls~~~i~~Gf~~lL~~l~Dl~lDiP~a~~~la~fiAraV~d~~l 162 (640)
.|++.||+++|++||||+++||||+|+||++||++++|++||.+||..+|++++|+++|+|+||+|+|.||||||+||++
T Consensus 84 ~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~lle~ldDl~lDiP~a~~~la~flaRaV~d~~l 163 (358)
T 3eiq_C 84 EMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTNDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGIL 163 (358)
T ss_dssp GGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTTTSCCHHHHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCS
T ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhhcCCCCchHHHHHHHHHhhcccCCCchhHHhhhhcCCC-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006556 163 PPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGST-HITVEEVKKKIADLLREYVESGDAFEACRCIR 241 (640)
Q Consensus 163 ~~~~l~~~~~~~~~~~~g~~~l~~a~~~lLs~~~~~~rl~~~Wgg~~-~~~~~el~~ki~~lL~EY~~s~D~~EA~~cl~ 241 (640)
||+||.+..... .++.|+++|++|+ ++|+++|+.+|++|+||+|+ .++++++++|++++|+|||+++|++||++||+
T Consensus 164 ~~~~l~~~~~~~-~~~~~~~~l~~a~-~~L~~~~~~~~~~~~WG~g~~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~ 241 (358)
T 3eiq_C 164 CNTYIDSYKGTV-DCVQARAALDKAT-VLLSMSKGGKRKDSVWGSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLK 241 (358)
T ss_dssp CSSTTGGGC----CCHHHHHHHHHHH-HHHTC---------CCCCCCSSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CHHHHHHHhhcc-cchHHHHHHHHHH-HHHhccchHHHHHHhcCCCCCCccHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 999999987554 5678999999996 89999999999999999554 56999999999999999999999999999999
Q ss_pred HhCCCcchHHHHHHHHHHHhccC--CchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhccccccccccchHHHHHHHHHH
Q 006556 242 ELGVSFFHHEVVKRALVLAMEIR--TAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPV 319 (640)
Q Consensus 242 EL~~p~fhhe~V~~ai~~alE~~--~~~~~v~~LL~~L~~~~~is~~q~~~Gf~rv~e~ldDi~lDvP~A~~~l~~~v~~ 319 (640)
||++|+|||+||+++|+++||++ .+++++++||++|.++|+||++||.+||.|+++.++||+||||+||++|++|+++
T Consensus 242 EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~var 321 (358)
T 3eiq_C 242 ELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEE 321 (358)
T ss_dssp HHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHHH
Confidence 99999999999999999999986 4678999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCChhhhhhhccCCccc
Q 006556 320 AISEGWLDASFMKSLGEDGRVQ 341 (640)
Q Consensus 320 ~~~~g~l~~~~~~~~~~~~~~~ 341 (640)
|+.+|||+.+|+..+|++|||.
T Consensus 322 ai~~g~l~~~f~~~~p~r~rkr 343 (358)
T 3eiq_C 322 CFQAGIISKQLRDLCPSRGRKR 343 (358)
T ss_dssp HHHHTSSCHHHHTTCCCC----
T ss_pred HHHCCCCCHHHHHhCcccCCcc
Confidence 9999999999999999999993
No 2
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=100.00 E-value=8.7e-73 Score=602.91 Aligned_cols=289 Identities=29% Similarity=0.463 Sum_probs=264.6
Q ss_pred CcchhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChhhHHHHHHHHHHHHhccCChHH
Q 006556 342 QEDEKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTED 421 (640)
Q Consensus 342 ~~~~~~ee~~k~~~~il~EYf~~~D~~E~~~~l~el~~p~~~~~~v~~~i~~aldr~~~eREl~s~LLs~L~~~~ls~~~ 421 (640)
.+.+|++||+|++++||+|||+++|++|++.++++||+|.|++.||+++|++||||+++||||+|+||++||+.++|++|
T Consensus 45 ~p~ls~ee~~k~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~~~ls~~~ 124 (358)
T 3eiq_C 45 VLPLDETAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTND 124 (358)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTTTSCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCCHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred HHHHHHHHHhhhhhhhhchhchHHHHHHHHHHHHHhccCCchhhhHhhccCCCCCcHHHHHHHHHHHHhcccccccccce
Q 006556 422 IVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVRVARSLIAARHAGERLLRC 501 (640)
Q Consensus 422 i~~gf~~lL~~l~Dl~lDiP~a~~~la~fiARaV~dd~l~~~~l~~~~~~~~~~~~g~~~l~~a~~~L~~~h~~~rl~~~ 501 (640)
|.+||.++|++++|+++|+|+|+++||+||||||+|+++||+||.++.... .++.|+++|++|+++|+++|+.+|++||
T Consensus 125 i~~gf~~lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~-~~~~~~~~l~~a~~~L~~~~~~~~~~~~ 203 (358)
T 3eiq_C 125 VEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTV-DCVQARAALDKATVLLSMSKGGKRKDSV 203 (358)
T ss_dssp HHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC----CCHHHHHHHHHHHHHHTC---------C
T ss_pred HHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcc-cchHHHHHHHHHHHHHhccchHHHHHHh
Confidence 999999999999999999999999999999999999999999999987653 5788999999999999999999999999
Q ss_pred ecCCCCc-chHHHHHHHHHHHHHHHhccCHHHHHHHHHhhCCCCcchHHHHHHHHHHhccCch----HHHHHHHHHHHcC
Q 006556 502 WGGGTGW-AVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKND----RMLDLLQECFSEG 576 (640)
Q Consensus 502 Wg~~~g~-~~~~~k~ki~~ll~EY~~s~D~~EA~~cv~eL~~p~fhhelV~~ai~~alE~~~~----~~~~LL~~l~~~~ 576 (640)
||+|+|+ ++++++++|+++|+||+++||++||++||+||++||||||||+++|+++||++++ .+++||++|.++|
T Consensus 204 WG~g~~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~g 283 (358)
T 3eiq_C 204 WGSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 283 (358)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 9998887 5999999999999999999999999999999999999999999999999999743 6899999999999
Q ss_pred CCCHHHHHhHHHHHhhccchhhccccchHHHHHHHHHHHHHcCCCCCccccCccc
Q 006556 577 LITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLLPAFGSCVAD 631 (640)
Q Consensus 577 ~vs~~q~~~Gf~rv~~~l~Di~lDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~ 631 (640)
+||++||.+||.||++.|+||+||||+||.+|++|+.+|+.+|||+.+|....|.
T Consensus 284 lls~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~varai~~g~l~~~f~~~~p~ 338 (358)
T 3eiq_C 284 TITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPS 338 (358)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHHHhCcc
Confidence 9999999999999999999999999999999999999999999999999987765
No 3
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=100.00 E-value=9.6e-73 Score=592.83 Aligned_cols=284 Identities=30% Similarity=0.478 Sum_probs=270.0
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChhhHHHHHHHHHHHHhccCChHHHHHHHHH
Q 006556 349 RYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVM 428 (640)
Q Consensus 349 e~~k~~~~il~EYf~~~D~~E~~~~l~el~~p~~~~~~v~~~i~~aldr~~~eREl~s~LLs~L~~~~ls~~~i~~gf~~ 428 (640)
||+|++.++|+|||++||++|++.|++|+++|.|++.||+++|++||||+++||||+|+||++||+.++|++||.+||..
T Consensus 1 e~~k~~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~ 80 (307)
T 2zu6_B 1 AFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDK 80 (307)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTBCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred HHhhhhhhhhchhchHHHHHHHHHHHHHhccCCchhhhHhhccCCCCCcHHHHHHHHHHHHhcccccccccceecCCCCc
Q 006556 429 LLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVRVARSLIAARHAGERLLRCWGGGTGW 508 (640)
Q Consensus 429 lL~~l~Dl~lDiP~a~~~la~fiARaV~dd~l~~~~l~~~~~~~~~~~~g~~~l~~a~~~L~~~h~~~rl~~~Wg~~~g~ 508 (640)
+|++++|+++|+|+|++++|.|+||||+|+++||+|+.++... +.++.|++++++|+++|+++|+++|++||||+|+|+
T Consensus 81 ll~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~-~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~ 159 (307)
T 2zu6_B 81 LLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGT-VDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQ 159 (307)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTT-CCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTT
T ss_pred HHHhhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhc-ccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCC
Confidence 9999999999999999999999999999999999999998875 578899999999999999999999999999998886
Q ss_pred -chHHHHHHHHHHHHHHHhccCHHHHHHHHHhhCCCCcchHHHHHHHHHHhccCch----HHHHHHHHHHHcCCCCHHHH
Q 006556 509 -AVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKND----RMLDLLQECFSEGLITTNQM 583 (640)
Q Consensus 509 -~~~~~k~ki~~ll~EY~~s~D~~EA~~cv~eL~~p~fhhelV~~ai~~alE~~~~----~~~~LL~~l~~~~~vs~~q~ 583 (640)
++++++++|+++|+||+++||++||++||+||++|+||||||+++|+++||++++ .+++||++|.++|+||++||
T Consensus 160 ~~~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 160 QSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 6999999999999999999999999999999999999999999999999999743 58999999999999999999
Q ss_pred HhHHHHHhhccchhhccccchHHHHHHHHHHHHHcCCCCCccccCcccCC
Q 006556 584 TKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLLPAFGSCVADAS 633 (640)
Q Consensus 584 ~~Gf~rv~~~l~Di~lDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~ 633 (640)
.+||.|+++.|+|++||||+||++|++|+.+|+.+|||+.+|....+..+
T Consensus 240 ~~Gf~~vl~~l~Dl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~~~~~ 289 (307)
T 2zu6_B 240 KRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSRG 289 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHHHTSCCC-
T ss_pred HHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHHHhCCccc
Confidence 99999999999999999999999999999999999999999998776544
No 4
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=100.00 E-value=2.3e-71 Score=582.33 Aligned_cols=289 Identities=30% Similarity=0.484 Sum_probs=272.5
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006556 51 DYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVI 130 (640)
Q Consensus 51 e~~k~~~~il~EYf~~~D~~Ea~~~l~eL~~p~~~~~~v~~~i~~aLdr~~~eREl~s~LLs~L~~~~ls~~~i~~Gf~~ 130 (640)
||+|++++||+|||+++|++||+.|++|||+|.|++.||+++|++||||+++|||++|+||++||++++|++||.+||..
T Consensus 1 e~~k~~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~ 80 (307)
T 2zu6_B 1 AFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDK 80 (307)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTBCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhcchhhHHHHHHHHHHHHHhcCCCChhhhhhhhhcCCCCchHHHHHHHHHhhcccCCCchhHHhhhhcCCC-
Q 006556 131 LLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGST- 209 (640)
Q Consensus 131 lL~~l~Dl~lDiP~a~~~la~fiAraV~d~~l~~~~l~~~~~~~~~~~~g~~~l~~a~~~lLs~~~~~~rl~~~Wgg~~- 209 (640)
+|++++|+++|+|+||+++|.|+||||+||++||+|+.+.... +.++.|++++++|+ ++|+++||..|++++||+++
T Consensus 81 ll~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~-~~~~~g~~~l~~a~-~~l~~~~~~~~~~~~WG~~~~ 158 (307)
T 2zu6_B 81 LLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGT-VDCVQARAALDKAT-VLLSMSKGGKRKDSVWGSGGG 158 (307)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTT-CCCHHHHHHHHHHH-HHHHTCC----CCCSSCCCST
T ss_pred HHHhhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhc-ccchHHHHHHHHHH-HHhcccccHhHHhhhcCCCCC
Confidence 9999999999999999999999999999999999999998874 57789999999996 79999999999999999554
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhccC--CchHHHHHHHHHHHHcCCCCHHH
Q 006556 210 HITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIR--TAEPLILKLLKEAAEEGLISSSQ 287 (640)
Q Consensus 210 ~~~~~el~~ki~~lL~EY~~s~D~~EA~~cl~EL~~p~fhhe~V~~ai~~alE~~--~~~~~v~~LL~~L~~~~~is~~q 287 (640)
.+|++++++||+++|+||+++||++||++||+||++|+|||+||+++|+++||++ .+++++++||++|.++|+||++|
T Consensus 159 ~~~~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 159 QQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 5699999999999999999999999999999999999999999999999999986 35889999999999999999999
Q ss_pred HHHHHHHHhhccccccccccchHHHHHHHHHHHHhcCCCChhhhhhhccCCccc
Q 006556 288 MAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQ 341 (640)
Q Consensus 288 ~~~Gf~rv~e~ldDi~lDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~~~ 341 (640)
|.+||.|+++.++|++||+|+||+++++|+++|+.+|||+.+|++.+|++||+.
T Consensus 239 ~~~Gf~~vl~~l~Dl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~~~~~rkr 292 (307)
T 2zu6_B 239 MKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSRGRKR 292 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHHHTSCCC----
T ss_pred HHHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHHHhCCcccccc
Confidence 999999999999999999999999999999999999999999999999999983
No 5
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=100.00 E-value=1.4e-42 Score=333.86 Aligned_cols=164 Identities=28% Similarity=0.400 Sum_probs=145.4
Q ss_pred cchhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChhhHHHHHHHHHHHHhccCChHHH
Q 006556 343 EDEKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDI 422 (640)
Q Consensus 343 ~~~~~ee~~k~~~~il~EYf~~~D~~E~~~~l~el~~p~~~~~~v~~~i~~aldr~~~eREl~s~LLs~L~~~~ls~~~i 422 (640)
+.++.++|+|+++++|+|||+++|++|++.|++|++.|.|++.||+++|++|||||++|||++|+||++||+.++|++||
T Consensus 2 p~~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~~~ls~~~i 81 (165)
T 2rg8_A 2 LPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDV 81 (165)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBTTTBCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHCCCCHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhchhchHHHHHHHHHHHHHhccCCchhhhHhhccCCCCCcHHHHHHHHHHHHhccccccccccee
Q 006556 423 VNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVRVARSLIAARHAGERLLRCW 502 (640)
Q Consensus 423 ~~gf~~lL~~l~Dl~lDiP~a~~~la~fiARaV~dd~l~~~~l~~~~~~~~~~~~g~~~l~~a~~~L~~~h~~~rl~~~W 502 (640)
.+||..++++++|+++|+|+|++++|+|+||||+|+++||+|+.++... +.++.|++++++|+++|+++||++|++|||
T Consensus 82 ~~Gf~~lle~ldDl~iDiP~a~~~la~fiarav~d~~l~~~~l~~~~~~-~~~~~~~~~l~~a~~ll~~~~~~~~~~~~W 160 (165)
T 2rg8_A 82 EKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGT-VDCVQARAALDKATVLLSMSKGGKRKDSVW 160 (165)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTHHHHTTTT-CCCHHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHhChhhcccccchHHHHHHHHHHHHHcCCCCHHHHHHHHhc-cCchHHHHHHHHHHHHHhccccHHHHHhhc
Confidence 9999999999999999999999999999999999999999999998886 778999999999999999999999999999
Q ss_pred cCCCC
Q 006556 503 GGGTG 507 (640)
Q Consensus 503 g~~~g 507 (640)
|+|||
T Consensus 161 g~g~g 165 (165)
T 2rg8_A 161 GSGGG 165 (165)
T ss_dssp -----
T ss_pred CCCCC
Confidence 99886
No 6
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=100.00 E-value=1.6e-41 Score=326.43 Aligned_cols=164 Identities=29% Similarity=0.404 Sum_probs=145.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhCCCCHHHH
Q 006556 45 ISDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQI 124 (640)
Q Consensus 45 ~~~s~ee~~k~~~~il~EYf~~~D~~Ea~~~l~eL~~p~~~~~~v~~~i~~aLdr~~~eREl~s~LLs~L~~~~ls~~~i 124 (640)
|++|++||+|+++++|+|||+++|++||++|++||++|.|++.||+++|++||||+++|||++|+||++|+++++|++||
T Consensus 2 p~~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~~~ls~~~i 81 (165)
T 2rg8_A 2 LPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDV 81 (165)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBTTTBCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHCCCCHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHhcCCCChhhhhhhhhcCCCCchHHHHHHHHHhhcccCCCchhHHhhh
Q 006556 125 RDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERR 204 (640)
Q Consensus 125 ~~Gf~~lL~~l~Dl~lDiP~a~~~la~fiAraV~d~~l~~~~l~~~~~~~~~~~~g~~~l~~a~~~lLs~~~~~~rl~~~ 204 (640)
.+||..++++++|+++|+|+||+++|+|+||+|.||++||+|+.+.... +.++.|++++++|+ ++|+++||.+|++++
T Consensus 82 ~~Gf~~lle~ldDl~iDiP~a~~~la~fiarav~d~~l~~~~l~~~~~~-~~~~~~~~~l~~a~-~ll~~~~~~~~~~~~ 159 (165)
T 2rg8_A 82 EKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGT-VDCVQARAALDKAT-VLLSMSKGGKRKDSV 159 (165)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTHHHHTTTT-CCCHHHHHHHHHHH-HHHHTC---------
T ss_pred HHHHHHHHHhChhhcccccchHHHHHHHHHHHHHcCCCCHHHHHHHHhc-cCchHHHHHHHHHH-HHHhccccHHHHHhh
Confidence 9999999999999999999999999999999999999999999998876 78899999999997 899999999999999
Q ss_pred hcCCCC
Q 006556 205 WGGSTH 210 (640)
Q Consensus 205 Wgg~~~ 210 (640)
||+|++
T Consensus 160 Wg~g~g 165 (165)
T 2rg8_A 160 WGSGGG 165 (165)
T ss_dssp ------
T ss_pred cCCCCC
Confidence 997753
No 7
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=100.00 E-value=5.2e-34 Score=263.68 Aligned_cols=127 Identities=32% Similarity=0.531 Sum_probs=123.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhccC--CchHHHHHHHHHHHHcCCCCHHHH
Q 006556 211 ITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIR--TAEPLILKLLKEAAEEGLISSSQM 288 (640)
Q Consensus 211 ~~~~el~~ki~~lL~EY~~s~D~~EA~~cl~EL~~p~fhhe~V~~ai~~alE~~--~~~~~v~~LL~~L~~~~~is~~q~ 288 (640)
+|++++++|++++|+|||++||++||++||+||++|+|||+||+++|+++||++ .+++++++||++|+++|+||++||
T Consensus 1 ~p~eel~kki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 1 QPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 478999999999999999999999999999999999999999999999999986 457899999999999999999999
Q ss_pred HHHHHHHhhccccccccccchHHHHHHHHHHHHhcCCCChhhhhhhccC
Q 006556 289 AKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGED 337 (640)
Q Consensus 289 ~~Gf~rv~e~ldDi~lDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~ 337 (640)
.+||.|+++.+||++||+|+||+++++|+++|+.+|||+.+|+..+|+|
T Consensus 81 ~~Gf~~v~~~l~Dl~lDiP~a~~~l~~~v~~ai~~g~l~~~~~~~~p~~ 129 (129)
T 2nsz_A 81 KRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSR 129 (129)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTCTTC
T ss_pred HHHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHhhCCCC
Confidence 9999999999999999999999999999999999999999999999875
No 8
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=100.00 E-value=1.5e-33 Score=267.53 Aligned_cols=132 Identities=33% Similarity=0.542 Sum_probs=122.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhccC--CchHHHHHHHHHHHHcCCCCHHH
Q 006556 210 HITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIR--TAEPLILKLLKEAAEEGLISSSQ 287 (640)
Q Consensus 210 ~~~~~el~~ki~~lL~EY~~s~D~~EA~~cl~EL~~p~fhhe~V~~ai~~alE~~--~~~~~v~~LL~~L~~~~~is~~q 287 (640)
+.|++++++|++++|+|||++||++||++||+||++|+|||+||+++|+++||++ .+++++++||++|+++|+||++|
T Consensus 2 ~~~~eel~kki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 2 QQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred CChHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 4688999999999999999999999999999999999999999999999999985 56889999999999999999999
Q ss_pred HHHHHHHHhhccccccccccchHHHHHHHHHHHHhcCCCChhhhhhhcc--CCccc
Q 006556 288 MAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGE--DGRVQ 341 (640)
Q Consensus 288 ~~~Gf~rv~e~ldDi~lDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~--~~~~~ 341 (640)
|.+||.|+++.+|||+||+|+||+++++|+++|+.+|||+.+|+..+|. +||+.
T Consensus 82 ~~~Gf~~vl~~ldDl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~p~~~~~rk~ 137 (152)
T 2ion_A 82 MKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSRSRGRKR 137 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTCTTC------
T ss_pred HHHHHHHHHHhChHhccCccchHHHHHHHHHHHHHCCCCCHHHHHhCCCcccchhh
Confidence 9999999999999999999999999999999999999999999999998 88883
No 9
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=99.98 E-value=7.1e-33 Score=256.09 Aligned_cols=123 Identities=32% Similarity=0.547 Sum_probs=117.3
Q ss_pred cchHHHHHHHHHHHHHHHhccCHHHHHHHHHhhCCCCcchHHHHHHHHHHhccCc----hHHHHHHHHHHHcCCCCHHHH
Q 006556 508 WAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKN----DRMLDLLQECFSEGLITTNQM 583 (640)
Q Consensus 508 ~~~~~~k~ki~~ll~EY~~s~D~~EA~~cv~eL~~p~fhhelV~~ai~~alE~~~----~~~~~LL~~l~~~~~vs~~q~ 583 (640)
+++++++++++++|+||+++||++||++||+||++|+|||++|+++|+++||+++ +.+++||++|.++|+||++||
T Consensus 1 ~p~eel~kki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 1 QPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 3689999999999999999999999999999999999999999999999999975 268999999999999999999
Q ss_pred HhHHHHHhhccchhhccccchHHHHHHHHHHHHHcCCCCCccccCcc
Q 006556 584 TKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLLPAFGSCVA 630 (640)
Q Consensus 584 ~~Gf~rv~~~l~Di~lDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~ 630 (640)
.+||.|+++.|+|+++|+|+||++|++|+.+|+.+|||+.+|....|
T Consensus 81 ~~Gf~~v~~~l~Dl~lDiP~a~~~l~~~v~~ai~~g~l~~~~~~~~p 127 (129)
T 2nsz_A 81 KRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCP 127 (129)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTCT
T ss_pred HHHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHhhCC
Confidence 99999999999999999999999999999999999999999987544
No 10
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=99.97 E-value=4.8e-32 Score=257.13 Aligned_cols=124 Identities=31% Similarity=0.550 Sum_probs=118.3
Q ss_pred cchHHHHHHHHHHHHHHHhccCHHHHHHHHHhhCCCCcchHHHHHHHHHHhccCch----HHHHHHHHHHHcCCCCHHHH
Q 006556 508 WAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKND----RMLDLLQECFSEGLITTNQM 583 (640)
Q Consensus 508 ~~~~~~k~ki~~ll~EY~~s~D~~EA~~cv~eL~~p~fhhelV~~ai~~alE~~~~----~~~~LL~~l~~~~~vs~~q~ 583 (640)
.++++++++|+++|+||+++||++||++||+||++|+|||+||+++|+++||++++ .+++||.+|.++|+||++||
T Consensus 3 ~~~eel~kki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 3 QPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 46899999999999999999999999999999999999999999999999999632 68999999999999999999
Q ss_pred HhHHHHHhhccchhhccccchHHHHHHHHHHHHHcCCCCCccccCccc
Q 006556 584 TKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLLPAFGSCVAD 631 (640)
Q Consensus 584 ~~Gf~rv~~~l~Di~lDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~ 631 (640)
.+||.|+++.||||+||+|+||++|++|+.+|+.+|||+.+|....|.
T Consensus 83 ~~Gf~~vl~~ldDl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~p~ 130 (152)
T 2ion_A 83 KRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPS 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTCTT
T ss_pred HHHHHHHHHhChHhccCccchHHHHHHHHHHHHHCCCCCHHHHHhCCC
Confidence 999999999999999999999999999999999999999999887544
No 11
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=99.96 E-value=7.3e-27 Score=250.56 Aligned_cols=296 Identities=15% Similarity=0.210 Sum_probs=205.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCC-ChHHHHHHHHHHhcCCChhHHHHHHHHHHHHHh-CCCCHHHH
Q 006556 47 DPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSE-YHPYFIKRLVSMAMDRHDKEKEMASVLLSALYA-DVISPDQI 124 (640)
Q Consensus 47 ~s~ee~~k~~~~il~EYf~~~D~~Ea~~~l~eL~~p~-~~~~~v~~~i~~aLdr~~~eREl~s~LLs~L~~-~~ls~~~i 124 (640)
-|.+|+.|++++||+|||+++|++||++|++||+.|. |++.||+++|++||||++.+||++|+||++|++ +++|++||
T Consensus 6 ~~~~~~~k~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~ 85 (364)
T 3l6a_A 6 HSKEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNF 85 (364)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 4889999999999999999999999999999999996 999999999999999999999999999999998 99999999
Q ss_pred HHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHhcCCCChhhhhhhhhcCCCCchHHHHHHHHHhhcccCCCchhHHhhh
Q 006556 125 RDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERR 204 (640)
Q Consensus 125 ~~Gf~~lL~~l~Dl~lDiP~a~~~la~fiAraV~d~~l~~~~l~~~~~~~~~~~~g~~~l~~a~~~lLs~~~~~~rl~~~ 204 (640)
.+||.++++.++|+++|+|+||+|+|+|+||+|.||++|++++.+.... |..+...+.-- ..+....|.+++..+
T Consensus 86 ~~Gf~~lle~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~---G~~~~l~l~vl--~~~~k~~G~~~l~~l 160 (364)
T 3l6a_A 86 MQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLES---GTHFPLFLLCL--QQLAKLQDREWLTEL 160 (364)
T ss_dssp HHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGG---GTTTTHHHHHH--HHHHHHSCHHHHHHH
T ss_pred HHHHHHHHhhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcc---cchHHHHHHHH--HHHHHhcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999986532 22222211111 123334566777777
Q ss_pred hcCCC----------CC------------------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCc--chHHHHH
Q 006556 205 WGGST----------HI------------------TVEEVKKKIADLLREYVESGDAFEACRCIRELGVSF--FHHEVVK 254 (640)
Q Consensus 205 Wgg~~----------~~------------------~~~el~~ki~~lL~EY~~s~D~~EA~~cl~EL~~p~--fhhe~V~ 254 (640)
|..++ .+ |..++++.+..+|++ .-+.++-+..|++--.|. -.++||+
T Consensus 161 ~~~sgl~l~~FlPe~~~~~~~~~e~~~~~~L~~l~~~~~l~~~L~~~l~~---~~~~~~i~~wik~n~~~~~~~~~~fir 237 (364)
T 3l6a_A 161 FQQSKVNMQKMLPEIDQNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKL---DPSPQTIYKWIKDNISPKLHVDKGFVN 237 (364)
T ss_dssp HHHHTCCSGGGSCGGGCSHHHHHHHHHHHTCGGGCHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHSCHHHHTCHHHHH
T ss_pred HHHcCCCHHHhCCccccchhHHHHHHHhCCCcccCCHHHHHHHHHHHHHc---CCChHHHHHHHHHhCCcccCCCHHHHH
Confidence 75221 11 113344444444432 346677777777764332 3456666
Q ss_pred HHHHHHhcc-----C-----------Cch----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHhhccccccccccc
Q 006556 255 RALVLAMEI-----R-----------TAE----------PLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPS 308 (640)
Q Consensus 255 ~ai~~alE~-----~-----------~~~----------~~v~~LL~~L~~~~~is~~q~~~Gf~rv~e~ldDi~lDvP~ 308 (640)
..+...++. + ..+ ..-..||+..+.+.-=..-++..|++++.... +-|.
T Consensus 238 ~L~t~v~~~~~~~~~~~~~~~d~~~~~~k~~~~~~~~~l~~~~~ll~~~~~~~~~~q~~~L~alq~~~~~~-----~~~~ 312 (364)
T 3l6a_A 238 ILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYNS-----NFPK 312 (364)
T ss_dssp HHHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----TCCT
T ss_pred HHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhc-----cccH
Confidence 655444431 0 001 11233444444321101345566777766432 4443
Q ss_pred hHHHHHHHHHHHHhcCCCChhhhhhhccCCcccCcchhHHHHHHHHHHHHH
Q 006556 309 ARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQQEDEKVKRYKEEVVTIIH 359 (640)
Q Consensus 309 A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~ee~~k~~~~il~ 359 (640)
..+..++....+.++|+.+-+-.=.+.+. .+.+....+++.+++.+.
T Consensus 313 --~~l~~il~~LYd~DileEe~il~W~~~~~--~~~~~k~~~~~~~~~Fi~ 359 (364)
T 3l6a_A 313 --GMLLRFFVHFYDMEIIEEEAFLAWKEDIT--QEFPGKGKALFQVNQWLT 359 (364)
T ss_dssp --THHHHHHHHHHHTTSSCHHHHHHHHHCCC--CSSTTHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhhhhhhHHHHHHHhcCC--cccchHHHHHHHHHHHHH
Confidence 45677888889999999866655443332 223345567777777553
No 12
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=99.94 E-value=3.1e-28 Score=259.16 Aligned_cols=164 Identities=23% Similarity=0.295 Sum_probs=143.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChhHHHHHHHHHHHHHh-CCCCHHH
Q 006556 45 ISDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYA-DVISPDQ 123 (640)
Q Consensus 45 ~~~s~ee~~k~~~~il~EYf~~~D~~Ea~~~l~eL~~p~~~~~~v~~~i~~aLdr~~~eREl~s~LLs~L~~-~~ls~~~ 123 (640)
+++|+++++|+++++|+|||++||++||++|++||+.|.|+|.||+++|+++|||++.+||++++||++|++ +++|++|
T Consensus 3 ~~~s~ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~ 82 (339)
T 1ug3_A 3 AALSEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQ 82 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 457999999999999999999999999999999999999999999999999999999999999999999997 9999999
Q ss_pred HHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHhcCCCCh-hhhhhhhhcCCCCchHHHHHHHHHhhcccCCCchhHHh
Q 006556 124 IRDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPP-AFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVE 202 (640)
Q Consensus 124 i~~Gf~~lL~~l~Dl~lDiP~a~~~la~fiAraV~d~~l~~-~~l~~~~~~~~~~~~g~~~l~~a~~~lLs~~~~~~rl~ 202 (640)
+.+||.++++.++|+.+|+|++|+++|.|++|+|.+|++|+ .++......+..++.+...+..+- ..+...+|.+++.
T Consensus 83 ~~~Gf~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~vl-~~l~~~~g~~~l~ 161 (339)
T 1ug3_A 83 YYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEIL-GLLCKSMGPKKVG 161 (339)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHHH-HHHHHHHCHHHHH
T ss_pred HHHHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHHHH-HHHHHHcCHHHHH
Confidence 99999999999999999999999999999999999999999 444443332222234455555553 3466678999999
Q ss_pred hhhcCCC
Q 006556 203 RRWGGST 209 (640)
Q Consensus 203 ~~Wgg~~ 209 (640)
++|+.++
T Consensus 162 ~~~~~s~ 168 (339)
T 1ug3_A 162 TLWREAG 168 (339)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 9999443
No 13
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.4e-25 Score=240.56 Aligned_cols=266 Identities=18% Similarity=0.218 Sum_probs=188.7
Q ss_pred chhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCC-CchHHHHHHHHHhhcCChhhHHHHHHHHHHHHhc-cCChHH
Q 006556 344 DEKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPE-FNPIFLKKVITLAMDRKNREKEMASVLLSALHIE-IFSTED 421 (640)
Q Consensus 344 ~~~~ee~~k~~~~il~EYf~~~D~~E~~~~l~el~~p~-~~~~~v~~~i~~aldr~~~eREl~s~LLs~L~~~-~ls~~~ 421 (640)
.-+.+++.|+++++|+|||+++|++|++.|++|++.|. |++.||+.+|++||||++++||++|+||++|+.+ ++|++|
T Consensus 5 ~~~~~~~~k~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~ 84 (364)
T 3l6a_A 5 HHSKEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDN 84 (364)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred cccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 34689999999999999999999999999999999996 9999999999999999999999999999999996 999999
Q ss_pred HHHHHHHHHhhhhhhhhchhchHHHHHHHHHHHHHhccCCchhhhHhhccCCCCCcHHHHHHHHHHHHhcccccccccce
Q 006556 422 IVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVRVARSLIAARHAGERLLRC 501 (640)
Q Consensus 422 i~~gf~~lL~~l~Dl~lDiP~a~~~la~fiARaV~dd~l~~~~l~~~~~~~~~~~~g~~~l~~a~~~L~~~h~~~rl~~~ 501 (640)
|.+||.+++++++|+.+|+|+|+++||.|+||+|.|+++||+++.++...-........++ ..+....|..++...
T Consensus 85 ~~~Gf~~lle~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl----~~~~k~~G~~~l~~l 160 (364)
T 3l6a_A 85 FMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCL----QQLAKLQDREWLTEL 160 (364)
T ss_dssp HHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHH----HHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHhhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHH----HHHHHhcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999998765311112222233 233333444444444
Q ss_pred ecCCC------------------------Ccc----hHHHHHHHHHHHHHHHhccCHHHHHHHHHhhCCCC--cchHHHH
Q 006556 502 WGGGT------------------------GWA----VEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPF--FNHEVVK 551 (640)
Q Consensus 502 Wg~~~------------------------g~~----~~~~k~ki~~ll~EY~~s~D~~EA~~cv~eL~~p~--fhhelV~ 551 (640)
|-.+| |++ ..++++++..+|+| .-+.+|-...|++--.|. -.++||+
T Consensus 161 ~~~sgl~l~~FlPe~~~~~~~~~e~~~~~~L~~l~~~~~l~~~L~~~l~~---~~~~~~i~~wik~n~~~~~~~~~~fir 237 (364)
T 3l6a_A 161 FQQSKVNMQKMLPEIDQNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKL---DPSPQTIYKWIKDNISPKLHVDKGFVN 237 (364)
T ss_dssp HHHHTCCSGGGSCGGGCSHHHHHHHHHHHTCGGGCHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHSCHHHHTCHHHHH
T ss_pred HHHcCCCHHHhCCccccchhHHHHHHHhCCCcccCCHHHHHHHHHHHHHc---CCChHHHHHHHHHhCCcccCCCHHHHH
Confidence 42211 222 24555555555543 234567777777764443 3567776
Q ss_pred HHHHHHhccC-------------------ch---------HHHHHHHHHHHcCCCCHHHHHhHHHHHhhccchhhccccc
Q 006556 552 KALVMAMEKK-------------------ND---------RMLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPN 603 (640)
Q Consensus 552 ~ai~~alE~~-------------------~~---------~~~~LL~~l~~~~~vs~~q~~~Gf~rv~~~l~Di~lDvP~ 603 (640)
-.....++.. .+ .-..||+....+.-=..-++..|++++...+ +-|.
T Consensus 238 ~L~t~v~~~~~~~~~~~~~~~d~~~~~~k~~~~~~~~~l~~~~~ll~~~~~~~~~~q~~~L~alq~~~~~~-----~~~~ 312 (364)
T 3l6a_A 238 ILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYNS-----NFPK 312 (364)
T ss_dssp HHHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----TCCT
T ss_pred HHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhc-----cccH
Confidence 5554444311 01 1134444444322111345566777765432 3343
Q ss_pred hHHHHHHHHHHHHHcCCCCC
Q 006556 604 AKEKFTFYVEYARKKGWLLP 623 (640)
Q Consensus 604 A~~~l~~~v~~~~~~g~l~~ 623 (640)
..|..++....+..+|+.
T Consensus 313 --~~l~~il~~LYd~DileE 330 (364)
T 3l6a_A 313 --GMLLRFFVHFYDMEIIEE 330 (364)
T ss_dssp --THHHHHHHHHHHTTSSCH
T ss_pred --HHHHHHHHHHHHhhhhhh
Confidence 445667778889888887
No 14
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=99.93 E-value=1.4e-26 Score=246.47 Aligned_cols=164 Identities=20% Similarity=0.280 Sum_probs=149.2
Q ss_pred cchhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCchHHHHHHHHHhhcCChhhHHHHHHHHHHHHhc-cCChHH
Q 006556 343 EDEKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIE-IFSTED 421 (640)
Q Consensus 343 ~~~~~ee~~k~~~~il~EYf~~~D~~E~~~~l~el~~p~~~~~~v~~~i~~aldr~~~eREl~s~LLs~L~~~-~ls~~~ 421 (640)
+.+|.+++++++.++|+|||++||++|+++|++|++.|.|+|.||+++|+.+|||++.+||++++||++|+.+ ++|++|
T Consensus 3 ~~~s~ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~ 82 (339)
T 1ug3_A 3 AALSEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQ 82 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999976 999999
Q ss_pred HHHHHHHHHhhhhhhhhchhchHHHHHHHHHHHHHhccCCc-hhhhHhhccCCCCCcHHHHHHHHHHHHhcccccccccc
Q 006556 422 IVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAP-LNLEEISSKLPPNCSGSETVRVARSLIAARHAGERLLR 500 (640)
Q Consensus 422 i~~gf~~lL~~l~Dl~lDiP~a~~~la~fiARaV~dd~l~~-~~l~~~~~~~~~~~~g~~~l~~a~~~L~~~h~~~rl~~ 500 (640)
+.+||.+++++++|+.+|+|+++++||.|+||+|.++++|+ .++......+..+..+...+..+-..+...+|..|+.+
T Consensus 83 ~~~Gf~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~vl~~l~~~~g~~~l~~ 162 (339)
T 1ug3_A 83 YYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEILGLLCKSMGPKKVGT 162 (339)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHcCHHHHHH
Confidence 99999999999999999999999999999999999999999 44554443333345666788888888888899999999
Q ss_pred eecCCC
Q 006556 501 CWGGGT 506 (640)
Q Consensus 501 ~Wg~~~ 506 (640)
+|+.++
T Consensus 163 ~~~~s~ 168 (339)
T 1ug3_A 163 LWREAG 168 (339)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 999654
No 15
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=67.77 E-value=1.4e+02 Score=32.32 Aligned_cols=161 Identities=11% Similarity=0.067 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhC---C-CcchHHHHHHHHHHHhccCC---------chHHHHHHHHHHHHcCCCCH
Q 006556 219 KIADLLREYVESGDAFEACRCIRELG---V-SFFHHEVVKRALVLAMEIRT---------AEPLILKLLKEAAEEGLISS 285 (640)
Q Consensus 219 ki~~lL~EY~~s~D~~EA~~cl~EL~---~-p~fhhe~V~~ai~~alE~~~---------~~~~v~~LL~~L~~~~~is~ 285 (640)
-.+.+|+-|...||+++|.+.+.++. + |. .+.+.++..+.-+.. ..+...+++..+...|+.+.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd---~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd 104 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLS---QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN 104 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence 35677888999999999999998883 3 32 345566655543220 12456778888888876543
Q ss_pred HHHHHHHHHHhhccccccccccchHHHHHHHHHHHHhcCCCCh--hhhhhhccCCcccCcchhHHHHHHHHHHHHHHhhc
Q 006556 286 SQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDA--SFMKSLGEDGRVQQEDEKVKRYKEEVVTIIHEYFL 363 (640)
Q Consensus 286 ~q~~~Gf~rv~e~ldDi~lDvP~A~~~l~~~v~~~~~~g~l~~--~~~~~~~~~~~~~~~~~~~ee~~k~~~~il~EYf~ 363 (640)
.... ..++..+...|-+.. .+...+...|..++ . .....+|.-|..
T Consensus 105 ~~ty------------------------n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~----~tyn~lI~~~~~ 152 (501)
T 4g26_A 105 EATF------------------------TNGARLAVAKDDPEMAFDMVKQMKAFGIQPR----L----RSYGPALFGFCR 152 (501)
T ss_dssp HHHH------------------------HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC----H----HHHHHHHHHHHH
T ss_pred HHHH------------------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc----c----ceehHHHHHHHH
Confidence 3222 222233333333321 22223333332221 1 235778899999
Q ss_pred CCCHHHHHHHHHHcCCCCCchH-HHHHHHHHhhcCChhhHHHHHHHHHHHHhc
Q 006556 364 SDDIPELIRSLEDLGAPEFNPI-FLKKVITLAMDRKNREKEMASVLLSALHIE 415 (640)
Q Consensus 364 ~~D~~E~~~~l~el~~p~~~~~-~v~~~i~~aldr~~~eREl~s~LLs~L~~~ 415 (640)
.|+.+++...++++......|. ++-..+..++-+. ..-+-+-.+|..+...
T Consensus 153 ~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~-g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 153 KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT-KNADKVYKTLQRLRDL 204 (501)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHh
Confidence 9999999999998764333332 2222233333222 3345677788887765
No 16
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=62.67 E-value=40 Score=32.58 Aligned_cols=81 Identities=23% Similarity=0.296 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHhhCCCCcchHHHHHHHHHHhccCchHHHHHHHHHHH------cCCCCHHHHH
Q 006556 511 EDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFS------EGLITTNQMT 584 (640)
Q Consensus 511 ~~~k~ki~~ll~EY~~s~D~~EA~~cv~eL~~p~fhhelV~~ai~~alE~~~~~~~~LL~~l~~------~~~vs~~q~~ 584 (640)
+.+...+..+.+||-... -.|| ++++.+ |++.-+|+.+.. ..-||.+|+.
T Consensus 113 ~~~~~e~~~Lw~EyE~~~-t~Ea-~~vK~~----------------------Dkl~~~lqa~~~~g~~w~~~gv~~~q~~ 168 (200)
T 3kh1_A 113 PDQAAEYSALWQEYEARE-TADA-RFADAL----------------------DRLQPLLHNFETEGGTWKPHGVTRAKVD 168 (200)
T ss_dssp HHHHHHHHHHHHHHHHTC-SHHH-HHHHHH----------------------HHHHHHHHHHHTTSTTTTTTTCBHHHHH
T ss_pred hHHHHHHHHHHHHHHcCC-CHHH-HHHHHH----------------------HHHHHHHHHHHcCCCCccccCccHHHHH
Confidence 667888888999986432 2232 333333 566667776666 4678999999
Q ss_pred hHHHHHhhccchhhccccchHHHHHHHHHHHHHcCCCC
Q 006556 585 KGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLL 622 (640)
Q Consensus 585 ~Gf~rv~~~l~Di~lDvP~A~~~l~~~v~~~~~~g~l~ 622 (640)
+.-.++.+ ..|.-++++..+++.+++.|||.
T Consensus 169 ~~~~~i~~-------~~~~lw~~~~~~~~~~~~~g~~~ 199 (200)
T 3kh1_A 169 KLLPRIEA-------GSKRLGAYARALVDEAVRRGYLA 199 (200)
T ss_dssp HHHHHHHH-------HCHHHHHHHHHHHHHHHHHTSSB
T ss_pred HHhHHHhh-------cCHHHHHHHHHHHHHHHHcCCCC
Confidence 87555543 56999999999999999999985
No 17
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=50.04 E-value=26 Score=33.95 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHH------cCCCCHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHhcCCCC
Q 006556 268 PLILKLLKEAAE------EGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLD 327 (640)
Q Consensus 268 ~~v~~LL~~L~~------~~~is~~q~~~Gf~rv~e~ldDi~lDvP~A~~~l~~~v~~~~~~g~l~ 327 (640)
+.+..+|+.+.. ..-|+.+|+.+.-.++-+ ..|..|+++..++..+++.|||.
T Consensus 141 Dkl~~~lqa~~~~g~~w~~~gv~~~q~~~~~~~i~~-------~~~~lw~~~~~~~~~~~~~g~~~ 199 (200)
T 3kh1_A 141 DRLQPLLHNFETEGGTWKPHGVTRAKVDKLLPRIEA-------GSKRLGAYARALVDEAVRRGYLA 199 (200)
T ss_dssp HHHHHHHHHHHTTSTTTTTTTCBHHHHHHHHHHHHH-------HCHHHHHHHHHHHHHHHHHTSSB
T ss_pred HHHHHHHHHHHcCCCCccccCccHHHHHHHhHHHhh-------cCHHHHHHHHHHHHHHHHcCCCC
Confidence 455566666665 456899999987555444 68999999999999999999985
No 18
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=49.06 E-value=54 Score=36.80 Aligned_cols=90 Identities=14% Similarity=0.204 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHhCCCC--ChHHHHHHHHHHhcCCC-------hhHHHHHHHHHHHHHh-
Q 006556 48 PLDDYKKAVASIIEEYFSTG-DVEVAASDLRELGSSE--YHPYFIKRLVSMAMDRH-------DKEKEMASVLLSALYA- 116 (640)
Q Consensus 48 s~ee~~k~~~~il~EYf~~~-D~~Ea~~~l~eL~~p~--~~~~~v~~~i~~aLdr~-------~~eREl~s~LLs~L~~- 116 (640)
-..++++++....+.+|+.. .+++.+..++.++.+. .-..+..++|..-+|.- .+|=..+++|+=.|+.
T Consensus 443 ~~~dIE~ean~yfqkmY~~eisI~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~iTA~LFG~LI~~ 522 (603)
T 4b8b_A 443 INNDIEKEMQNYLQKMYSGELAIKDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVLFGSMILF 522 (603)
T ss_dssp CCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 34779999999999999988 5899999999998765 44455566665555432 4444459999999998
Q ss_pred CCCCHHHHHHHHHHHHhhhhh
Q 006556 117 DVISPDQIRDGFVILLESADD 137 (640)
Q Consensus 117 ~~ls~~~i~~Gf~~lL~~l~D 137 (640)
++++.-.+.-|+.-+++.+-+
T Consensus 523 ~Ll~~~~L~iALr~ILeAlrk 543 (603)
T 4b8b_A 523 QLLRGFVLDVAFRIIMRFAKE 543 (603)
T ss_dssp TSSCHHHHHHHHHHHHHHHTS
T ss_pred cccCcchHHHHHHHHHHHHhC
Confidence 999999999999999999987
No 19
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=45.13 E-value=3.2e+02 Score=29.40 Aligned_cols=80 Identities=16% Similarity=-0.006 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhh
Q 006556 219 KIADLLREYVESGDAFEACRCIRELGVSF-FHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEE 297 (640)
Q Consensus 219 ki~~lL~EY~~s~D~~EA~~cl~EL~~p~-fhhe~V~~ai~~alE~~~~~~~v~~LL~~L~~~~~is~~q~~~Gf~rv~e 297 (640)
--+.+|.-|...|++++|.+.++++..-. --....+.++..+.-+....+....+|..|-+.|.-.......-+.+.+.
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 35789999999999999999999983211 12356677777777666566778999999999988766554444444443
Q ss_pred c
Q 006556 298 S 298 (640)
Q Consensus 298 ~ 298 (640)
.
T Consensus 222 s 222 (501)
T 4g26_A 222 S 222 (501)
T ss_dssp S
T ss_pred c
Confidence 3
No 20
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=34.71 E-value=1.2e+02 Score=31.62 Aligned_cols=168 Identities=15% Similarity=0.139 Sum_probs=87.2
Q ss_pred cCCHHHHHHHHHHhC-----CCcchHHHHHH-HH---HHHhccC--CchHHHHHHHHHHHHc-----CCCCHHHHHHHHH
Q 006556 230 SGDAFEACRCIRELG-----VSFFHHEVVKR-AL---VLAMEIR--TAEPLILKLLKEAAEE-----GLISSSQMAKGFA 293 (640)
Q Consensus 230 s~D~~EA~~cl~EL~-----~p~fhhe~V~~-ai---~~alE~~--~~~~~v~~LL~~L~~~-----~~is~~q~~~Gf~ 293 (640)
+++-.|-.+.+..|. -+.|-||||.+ ++ ...++.. +....++.-|..|..- |+++..++.+-+-
T Consensus 129 ~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~ly 208 (339)
T 3dad_A 129 SSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLY 208 (339)
T ss_dssp HCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHH
Confidence 344444444444442 25677888876 33 3344433 3345566666666666 7787788887777
Q ss_pred HHhhccccccccccchHHHHHHHHHHHHhcCC--CChhhhhhhccCCcc---------cCcchhHHHHHHHHHHHHHHhh
Q 006556 294 RLEESLDDLALDIPSARNLFQSIVPVAISEGW--LDASFMKSLGEDGRV---------QQEDEKVKRYKEEVVTIIHEYF 362 (640)
Q Consensus 294 rv~e~ldDi~lDvP~A~~~l~~~v~~~~~~g~--l~~~~~~~~~~~~~~---------~~~~~~~ee~~k~~~~il~EYf 362 (640)
.++.+ .+. .=+-.|-+.|..||...= .++ +..++..-..++|.+ ...+-...|+.-.+.++|.--|
T Consensus 209 slv~s-~~~-~V~k~AL~LL~v~V~~se-~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL 285 (339)
T 3dad_A 209 TLCAS-LSR-LVVKTALKLLLVFVEYSE-NNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTL 285 (339)
T ss_dssp HGGGC-SCH-HHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHcC-ccH-HHHHHHHHHHHHHHccCc-ccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 77774 221 113344444555444320 000 000100001112222 0111233566666777777777
Q ss_pred cCCC-HH---HHHHHHHHcCCCCCchHHHHHHHHHhhcCChhhHHHHHHH
Q 006556 363 LSDD-IP---ELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVL 408 (640)
Q Consensus 363 ~~~D-~~---E~~~~l~el~~p~~~~~~v~~~i~~aldr~~~eREl~s~L 408 (640)
.+.+ .+ +++.++++++ +..+|...|.++....|+..+|
T Consensus 286 ~~apd~d~~~di~d~Le~~g--------i~~~i~r~l~~~~~~~~l~~Ql 327 (339)
T 3dad_A 286 AALPDQDSFYDVTDALEQQG--------MEALVQRHLGTAGTDVDLRTQL 327 (339)
T ss_dssp HHCSSHHHHHHHHHHHHHTT--------HHHHHHHHHSCTTSCHHHHHHH
T ss_pred hcCCChhHHHHHHHHHHHcc--------HHHHHHHHHhccCCCHHHHHHH
Confidence 7754 23 6666676665 3335555677877777877776
No 21
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=30.00 E-value=2.9e+02 Score=30.96 Aligned_cols=88 Identities=11% Similarity=0.228 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhhcCC-CHHHHHHHHHHcCCCC--CchHHHHHHHHHhhcC-----ChhhHHH--HHHHHHHHHhc-c
Q 006556 348 KRYKEEVVTIIHEYFLSD-DIPELIRSLEDLGAPE--FNPIFLKKVITLAMDR-----KNREKEM--ASVLLSALHIE-I 416 (640)
Q Consensus 348 ee~~k~~~~il~EYf~~~-D~~E~~~~l~el~~p~--~~~~~v~~~i~~aldr-----~~~eREl--~s~LLs~L~~~-~ 416 (640)
.+.++++....+.+|+.. .+++++..|+.++... .-..+..++|..=+|. +-..+|+ +++|+=.|..+ +
T Consensus 445 ~dIE~ean~yfqkmY~~eisI~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~iTA~LFG~LI~~~L 524 (603)
T 4b8b_A 445 NDIEKEMQNYLQKMYSGELAIKDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVLFGSMILFQL 524 (603)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcc
Confidence 679999999999999998 6999999999998654 4445666666555543 3345555 99999999986 9
Q ss_pred CChHHHHHHHHHHHhhhhh
Q 006556 417 FSTEDIVNGFVMLLESAED 435 (640)
Q Consensus 417 ls~~~i~~gf~~lL~~l~D 435 (640)
++...+.-|+..+++.+.+
T Consensus 525 l~~~~L~iALr~ILeAlrk 543 (603)
T 4b8b_A 525 LRGFVLDVAFRIIMRFAKE 543 (603)
T ss_dssp SCHHHHHHHHHHHHHHHTS
T ss_pred cCcchHHHHHHHHHHHHhC
Confidence 9999999999999999877
No 22
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=26.27 E-value=1.7e+02 Score=26.85 Aligned_cols=72 Identities=11% Similarity=0.206 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHh-------CCCcchHHHHHHHHHHHhccCCchHHHHHHHHHHHHcC
Q 006556 212 TVEEVKKKIADLLREYVESG---DAFEACRCIREL-------GVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEG 281 (640)
Q Consensus 212 ~~~el~~ki~~lL~EY~~s~---D~~EA~~cl~EL-------~~p~fhhe~V~~ai~~alE~~~~~~~v~~LL~~L~~~~ 281 (640)
+++++.++|+..|.+.+.+. .+..|.+||+.+ +.|..+..|+...=...+.++ . ..++.++.. -.-|
T Consensus 50 ~~~~A~~qM~~vI~~Ll~~s~~~~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~~~-l-~~FW~~Iv~-~~lg 126 (152)
T 1rw2_A 50 SFEEASNQLINHIEQFLDTNETPYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQ-L-NHFWEIVVQ-DGIT 126 (152)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHSC-C-HHHHHHHHH-HTCS
T ss_pred hHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhh-H-HHHHHHHHH-CCcc
Confidence 37788888888888887754 678999999887 568878888777555444432 2 345555554 4566
Q ss_pred CCCHH
Q 006556 282 LISSS 286 (640)
Q Consensus 282 ~is~~ 286 (640)
+||.+
T Consensus 127 LI~~~ 131 (152)
T 1rw2_A 127 LITKE 131 (152)
T ss_dssp SCSSS
T ss_pred cccHh
Confidence 67665
No 23
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=24.83 E-value=75 Score=27.61 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=38.1
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhC
Q 006556 203 RRWGGSTHITVEEVKKKIADLLREYVESGDAFEACRCIRELG 244 (640)
Q Consensus 203 ~~Wgg~~~~~~~el~~ki~~lL~EY~~s~D~~EA~~cl~EL~ 244 (640)
+-|..-+++|.++.+++--.++++.+...+..||...|.||.
T Consensus 63 ~AW~~l~gmS~eeA~~~YI~~v~~l~~~~~~~~~~~~~~~le 104 (106)
T 3fp5_A 63 DAWKSVEGTSKEVAYQKYVEKLLEILKKADTEESKKYIAEIE 104 (106)
T ss_dssp HHHHTTTTCCHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHh
Confidence 468877889999999999999999999999999999999985
No 24
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=22.44 E-value=1.4e+02 Score=26.13 Aligned_cols=121 Identities=9% Similarity=0.108 Sum_probs=63.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHhCCCcchHHHHHHHHHHHhccC--CchHHHHHHHHHHHHcCCCCH
Q 006556 209 THITVEEVKKKIADLLREYVESG-DAFEACRCIRELGVSFFHHEVVKRALVLAMEIR--TAEPLILKLLKEAAEEGLISS 285 (640)
Q Consensus 209 ~~~~~~el~~ki~~lL~EY~~s~-D~~EA~~cl~EL~~p~fhhe~V~~ai~~alE~~--~~~~~v~~LL~~L~~~~~is~ 285 (640)
..++.+.++++.+.|= .+. .+..+..-+-+ +. .++.++| .++...+.+. ..+=.++-|+...+...-=..
T Consensus 2 ssf~~~~l~~~L~~L~----~s~~sI~~~s~w~l~-~~-~~a~~iv-~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~ 74 (135)
T 4fu3_A 2 SSFSESALEKKLSELS----NSQQSVQTLSLWLIH-HR-KHAGPIV-SVWHRELRKAKSNRKLTFLYLANDVIQNSKRKG 74 (135)
T ss_dssp -CCCHHHHHHHHHHCC----SSTTHHHHHHHHHHH-TG-GGHHHHH-HHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHcc----ccHHHHHHHHHHHHH-HH-HHHHHHH-HHHHHHHHhcccchhHHHHHHHHHHHHHHHhcC
Confidence 4566777777776661 111 22222222221 12 2344444 4455555544 223345555555542111112
Q ss_pred HHHHHHHHHHhhcc-cccc-ccccchHHHHHHHHHHHHhcCCCChhhhhhhcc
Q 006556 286 SQMAKGFARLEESL-DDLA-LDIPSARNLFQSIVPVAISEGWLDASFMKSLGE 336 (640)
Q Consensus 286 ~q~~~Gf~rv~e~l-dDi~-lDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~ 336 (640)
.++.+.|.+++-.+ .++. ..-|.....+.+++.-.-+.++.+.+++..+..
T Consensus 75 ~~y~~~f~~~l~~~~~~~~~~~~~~~k~kl~kll~iW~~r~vf~~~~i~~L~~ 127 (135)
T 4fu3_A 75 PEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFIQQLKL 127 (135)
T ss_dssp SHHHHHHHTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Confidence 46888887764322 1111 112556777888888888899999888877643
No 25
>1yoz_A Hypothetical protein AF0941; APC5573, midwest center for structural genomics, MCSG, protein structure initiative, PSI, structural genomics; 2.00A {Archaeoglobus fulgidus} SCOP: a.253.1.1
Probab=22.16 E-value=1.9e+02 Score=24.95 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhhhhhhcch-----hhHHHHHHHHHHHH
Q 006556 121 PDQIRDGFVILLESADDLAVDI-----LDAVDILALFVARA 156 (640)
Q Consensus 121 ~~~i~~Gf~~lL~~l~Dl~lDi-----P~a~~~la~fiAra 156 (640)
-+|+..-|+++++.++|++--| |.+.+-+|-+|-|.
T Consensus 72 vSQL~~Hy~ri~~~l~d~e~Ki~kkl~~ev~~~i~~~~~~~ 112 (116)
T 1yoz_A 72 VSQLSIHFERLKEFAESKGFKIEKKLDPEVINEIALYIDRV 112 (116)
T ss_dssp HHTHHHHHHHHHHHHHTTC---CCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhHHHHHHHHH
Confidence 3477788899999999998888 78888888877764
No 26
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=20.88 E-value=2.8e+02 Score=32.13 Aligned_cols=201 Identities=14% Similarity=0.142 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHhcCCCChhhhhhhccCCcccCcchhHH
Q 006556 269 LILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQQEDEKVK 348 (640)
Q Consensus 269 ~v~~LL~~L~~~~~is~~q~~~Gf~rv~e~ldDi~lDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~e 348 (640)
.+-.|+..+.+.+--|-.+-..++..++.. |+|.-...+.+.+-.|+.. .|..-
T Consensus 11 ~l~~lI~rlge~~~~s~~~~l~~L~~~l~~------~l~~~r~~i~~~l~~~~~~--------------------~P~Kt 64 (771)
T 1h2v_C 11 HLESLICKVGEKSACSLESNLEGLAGVLEA------DLPNYKSKILRLLCTVARL--------------------LPEKL 64 (771)
T ss_dssp HHHHHHHTTTSSCSSCHHHHHHHHHHHHHH------THHHHHHHHHHHHHHHHHH--------------------CGGGH
T ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHHHHH------HHHhhHHHHHHHHHHHHHh--------------------CCCcc
Confidence 455566666665555555556666665532 5666666666666666441 11110
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCchHHHHHHHH---HhhcCCh-hhHHHHHHHHHHHHhc-cCChHHHH
Q 006556 349 RYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVIT---LAMDRKN-REKEMASVLLSALHIE-IFSTEDIV 423 (640)
Q Consensus 349 e~~k~~~~il~EYf~~~D~~E~~~~l~el~~p~~~~~~v~~~i~---~aldr~~-~eREl~s~LLs~L~~~-~ls~~~i~ 423 (640)
-+ -+ ++-.+-..+.|++...++++++. .++++++ .+...+-++|++|... +++..-+.
T Consensus 65 ~v----yA-------------aLVgllN~k~pe~G~~lv~~l~~~f~~~l~~~~~~~~k~~lrFLa~L~n~~Vv~~~~il 127 (771)
T 1h2v_C 65 TI----YT-------------TLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMV 127 (771)
T ss_dssp HH----HH-------------HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSBCHHHHH
T ss_pred hH----HH-------------HHHHHHHcCChhHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHhccCCeecHHHHH
Confidence 11 11 11111222224444444444443 2455543 3566677899999986 99999999
Q ss_pred HHHHHHHhhhhhhhhchhchHHHHHHHHHHHHHhccCCchhhhHhhccCCCCCcHHHHHHHHHHHH-hccccccccccee
Q 006556 424 NGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVRVARSLI-AARHAGERLLRCW 502 (640)
Q Consensus 424 ~gf~~lL~~l~Dl~lDiP~a~~~la~fiARaV~dd~l~~~~l~~~~~~~~~~~~g~~~l~~a~~~L-~~~h~~~rl~~~W 502 (640)
.=|..+++...+. ++| ..=+.+++.+|..- +.+++...... ....-..++.+.+.++ +.+|...++.++|
T Consensus 128 ~lL~~Ll~~~~e~--~~~---q~r~D~~v~~vL~~---Lp~~G~~L~e~-~~~~l~~lle~~~~yl~~r~~~~~~ll~~~ 198 (771)
T 1h2v_C 128 AMFENFVSVTQEE--DVP---QVRRDWYVYAFLSS---LPWVGKELYEK-KDAEMDRIFANTESYLKRRQKTHVPMLQVW 198 (771)
T ss_dssp HHHHHHHHGGGCS--SCC---HHHHHHHHHHHHTT---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHTCCCTTHHHHCSB
T ss_pred HHHHHHHHhhhhc--CCc---ccchhHHHHHHHHH---HHHHHHHHHhc-CHHHHHHHHHHHHHHHHhcCccchhhhhcc
Confidence 9999999988654 444 33344555544322 22222211100 0011235788999988 5566677888999
Q ss_pred cCCCCcc----hHHHHHHHHHHH
Q 006556 503 GGGTGWA----VEDAKDKIMKLL 521 (640)
Q Consensus 503 g~~~g~~----~~~~k~ki~~ll 521 (640)
.++.... ++.+..++..+-
T Consensus 199 ~~~~~~~~~~~l~~L~~ql~~lr 221 (771)
T 1h2v_C 199 TADKPHPQEEYLDCLWAQIQKLK 221 (771)
T ss_dssp CCCSSCCCCBHHHHHHHHHHHHH
T ss_pred ccCCCCchhhHHHHHHHHHHHHH
Confidence 7544322 555666666554
No 27
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=20.70 E-value=1.2e+02 Score=26.61 Aligned_cols=71 Identities=11% Similarity=0.201 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHh-------CCCcchHHHHHHHHHHHhccCCchHHHHHHHHHHHHcCC
Q 006556 213 VEEVKKKIADLLREYVESG---DAFEACRCIREL-------GVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGL 282 (640)
Q Consensus 213 ~~el~~ki~~lL~EY~~s~---D~~EA~~cl~EL-------~~p~fhhe~V~~ai~~alE~~~~~~~v~~LL~~L~~~~~ 282 (640)
++++.+.|+..|.+.+.+. .+..|..||+.+ +.|..+..|+...=...+.++ . ..++.++.. -.-|+
T Consensus 20 ~~~A~~qm~~vI~~Ll~~s~~~~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~-l-~~FW~~iv~-~~lgL 96 (120)
T 1q2z_A 20 FEEASNQLINHIEQFLDTNETPYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQ-L-NHFWEIVVQ-DGITL 96 (120)
T ss_dssp TTHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTS-T-THHHHHHHH-TTCCS
T ss_pred HHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhh-H-HHHHHHHHH-CCcCC
Confidence 5666677777777776643 778999999887 467777778776544444332 2 234554443 24555
Q ss_pred CCHH
Q 006556 283 ISSS 286 (640)
Q Consensus 283 is~~ 286 (640)
||++
T Consensus 97 I~~~ 100 (120)
T 1q2z_A 97 ITKE 100 (120)
T ss_dssp CCST
T ss_pred CcHh
Confidence 6654
No 28
>1ddb_A Protein (BID); apoptosis, programmed cell death, BCL-2 family, BH3 domain; NMR {Mus musculus} SCOP: f.1.4.1
Probab=20.28 E-value=1e+02 Score=29.50 Aligned_cols=62 Identities=16% Similarity=0.151 Sum_probs=45.6
Q ss_pred HHHHHHHhccCChH----HHHHHHHHHHhhhhhhhhchhchHHHHHHHHHHHHHhccCCchhhhHhhcc
Q 006556 407 VLLSALHIEIFSTE----DIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSK 471 (640)
Q Consensus 407 ~LLs~L~~~~ls~~----~i~~gf~~lL~~l~Dl~lDiP~a~~~la~fiARaV~dd~l~~~~l~~~~~~ 471 (640)
.|...|...-+|.+ ++..|.+.|++..| ..++=-++.=.++.++|+-|++. +|+.+.+++..
T Consensus 108 ~L~~~~~N~slsEEdrr~~LAaaleql~Qt~P-~dmekEk~~L~lamLLaKKVa~h--tPsLLrdVf~T 173 (195)
T 1ddb_A 108 QLAAQFMNGSLSEEDKRNCLAKALDEVKTAFP-RDMENDKAMLIMTMLLAKKVASH--APSLLRDVFHT 173 (195)
T ss_dssp HHHHHHCCSSSSSSSTTHHHHHHHHHHHHHSC-STHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHHHcC-chHHHHHHHHHHHHHHHHHHHHh--ChHHHHHHHHH
Confidence 33334444445555 88888899998888 55566677778899999999997 57888887764
Done!